Psyllid ID: psy3599

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MAGSVWQQQAFALDVRLNAHRVAKHANLRTLYIRRRNQLLRENSATTSDQLRNDQLRSTGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHEP
Secondary Structure (PSIPRED)
ccccHHHHHHHHccccccccccccccccEEEEEEEccccEEEEccccccccccEEEcccccEEEEEEcccEEccccEEEEEcccccEEEEEEEEcccccccccEEEEEEccccEEEEEEEccccEEEEEEEEEEcccccEEEEEEEEccccccccccEEEEEEccccEEEEEcccccccccccccccccccEEEEEEcccccEEEEEcccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHEEEcccccEEEEEEcccEEEEEEEEEEcccEEEEEEccccccccccEEEEEEEcccccEEEEEEEEEcccccEEEEEEEEcccccccccEEEEEEccccEEEEEEEccccEEEEEEEEEccccccEEEEEEEEcccEEccccEEEEEEcccccEEEEEccccccccHHHEcccccccEEEEEEcccccEEEEcccccEEEEEEEccccc
Coil and Loop (DISEMBL)
MAGSVWQQQAFALDVRLNAHRVAKHANLRTLYIRRRNQLlrensattsdqlrndqlrSTGVIVSILCddlgrlskgkrlvlsqdcpitclswrswisreardptlLVNIAANAVCILKVLDKEGavqlkrkfnvnhksskyqvrstfcpimsfregacvvtgsedscvYFLDIQSKEHKNAVNKLqghacpvlgvsfnydesllatsdYQGLIILWSREKHEP
Flexible Loop (DISEMBL)
MAGSVWQQQAFALDVRLNAHRVAKHANLRTLYIRRRNQLLrensattsdqlrndqlrstGVIVSILCDDLGRLSKGkrlvlsqdcpitclswrsWISREARDPTLLVNIAANAVCILKVLDKEGAVQLkrkfnvnhksskyqvrSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHEP
Low Complexity Region (SEG)
MAGSVWQQQAFALDVRLNAHRVAKHANLRTLYIRRRNQLLRENSATTSDQLRNDQLRSTGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHEP
Disordered region (IsUnstruct)
****VWQQQAFALDVRLNAHRVAKHANLRTLYIRRRNQLL***************LRSTGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWS******
Disordered Region (DISOPRED)
*AGSVWQQQAFALDVRLNAHRVAKHANLRTLYIRRRNQLLRENSATTSDQLRNDQLRSTGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE****
Disordered Region (DISEMBL)
MAGSVWQQQAFALDVRLNAHRVAKHANLRTLYIRRRNQLLRENSATTSDQLRNDQLRSTGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHEP
Disordered Region (DISPRO)
MAGSVWQQQAFALDVRLNAHRVAKHANLRTLYIRRRNQLLRENSATTSDQLRNDQLRSTGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGSVWQQQAFALDVRLNAHRVAKHANLRTLYIRRRNQLLRENSATTSDQLRNDQLRSTGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHEP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	223	2.2.26 [Sep-21-2011]
Q91V09	485	WD repeat-containing prot	yes	N/A	0.708	0.325	0.567	3e-48
Q9H1Z4	485	WD repeat-containing prot	yes	N/A	0.708	0.325	0.561	1e-47
Q6DKP5	485	WD repeat-containing prot	yes	N/A	0.708	0.325	0.561	1e-47
Q5RF24	485	WD repeat-containing prot	yes	N/A	0.708	0.325	0.561	1e-47
Q9V3J8	361	Protein will die slowly O	yes	N/A	0.457	0.282	0.336	0.0002
Q86VZ2	330	WD repeat-containing prot	no	N/A	0.354	0.239	0.352	0.0004
Q8BHD1	476	POC1 centriolar protein h	no	N/A	0.475	0.222	0.303	0.0004
Q5RE95	330	WD repeat-containing prot	no	N/A	0.354	0.239	0.352	0.0004
Q5M786	334	WD repeat-containing prot	no	N/A	0.345	0.230	0.337	0.0005
Q498M4	334	WD repeat-containing prot	no	N/A	0.457	0.305	0.318	0.0006

>sp|Q91V09|WDR13_MOUSE WD repeat-containing protein 13 OS=Mus musculus GN=Wdr13 PE=1 SV=1

 Score =  191 bits (485), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 92/162 (56%), Positives = 122/162 (75%), Gaps = 4/162 (2%)

Query: 60  GVIVSILCD-DLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK 118
           G + S L D   G+L+K KRLV+ +  P+T +S RSW+SREARDP+LL+N   N + + +
Sbjct: 326 GSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYR 385

Query: 119 VLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEH 178
           V+D EGA+QLKR F +  + S + VRS FCP+MSFR+GACVVTGSED CV+F D++ +  
Sbjct: 386 VVDNEGALQLKRSFPI--EQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVE-RAA 442

Query: 179 KNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK 220
           K AVNKLQGH+ PVL VSFN DESLLA+SD  G++I+W RE+
Sbjct: 443 KAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQ 484

Mus musculus (taxid: 10090)

>sp|Q9H1Z4|WDR13_HUMAN WD repeat-containing protein 13 OS=Homo sapiens GN=WDR13 PE=1 SV=2

 Score =  189 bits (481), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/162 (56%), Positives = 121/162 (74%), Gaps = 4/162 (2%)

Query: 60  GVIVSILCD-DLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK 118
           G + S L D   G+L+K KRLV+ +  P+T +S RSW+SREARDP+LL+N   N + + +
Sbjct: 326 GSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYR 385

Query: 119 VLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEH 178
           V+D EG +QLKR F +  + S + VRS FCP+MSFR+GACVVTGSED CV+F D++ +  
Sbjct: 386 VVDNEGTLQLKRSFPI--EQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVE-RAA 442

Query: 179 KNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK 220
           K AVNKLQGH+ PVL VSFN DESLLA+SD  G++I+W RE+
Sbjct: 443 KAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQ 484

Homo sapiens (taxid: 9606)

>sp|Q6DKP5|WDR13_PANTR WD repeat-containing protein 13 OS=Pan troglodytes GN=WDR13 PE=3 SV=1

 Score =  189 bits (481), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/162 (56%), Positives = 121/162 (74%), Gaps = 4/162 (2%)

Query: 60  GVIVSILCD-DLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK 118
           G + S L D   G+L+K KRLV+ +  P+T +S RSW+SREARDP+LL+N   N + + +
Sbjct: 326 GSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYR 385

Query: 119 VLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEH 178
           V+D EG +QLKR F +  + S + VRS FCP+MSFR+GACVVTGSED CV+F D++ +  
Sbjct: 386 VVDNEGTLQLKRSFPI--EQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVE-RAA 442

Query: 179 KNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK 220
           K AVNKLQGH+ PVL VSFN DESLLA+SD  G++I+W RE+
Sbjct: 443 KAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQ 484

Pan troglodytes (taxid: 9598)

>sp|Q5RF24|WDR13_PONAB WD repeat-containing protein 13 OS=Pongo abelii GN=WDR13 PE=2 SV=1

 Score =  189 bits (480), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/162 (56%), Positives = 121/162 (74%), Gaps = 4/162 (2%)

Query: 60  GVIVSILCD-DLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK 118
           G + S L D   G+L+K KRLV+ +  P+T +S RSW+SREARDP+LL+N   N + + +
Sbjct: 326 GSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYR 385

Query: 119 VLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEH 178
           V+D EG +QLKR F +  + S + VRS FCP+MSFR+GACVVTGSED CV+F D++ +  
Sbjct: 386 VVDNEGTLQLKRSFPI--EQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVE-RAA 442

Query: 179 KNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK 220
           K AVNKLQGH+ PVL VSFN DESLLA+SD  G++I+W RE+
Sbjct: 443 KAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQ 484

Pongo abelii (taxid: 9601)

>sp|Q9V3J8|WDS_DROME Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 11/113 (9%)

Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
           +AA     LK+ D      LK      HK+ KY + + F    S   G  +V+GSED+ V
Sbjct: 257 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNMV 310

Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
           Y  ++QSKE    V KLQGH   VL  + +  E+++A++  +    I LW  +
Sbjct: 311 YIWNLQSKE---VVQKLQGHTDTVLCTACHPTENIIASAALENDKTIKLWKSD 360

Essential for viability.

Drosophila melanogaster (taxid: 7227)

>sp|Q86VZ2|WDR5B_HUMAN WD repeat-containing protein 5B OS=Homo sapiens GN=WDR5B PE=2 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 9/88 (10%)

Query: 131 KFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHAC 190
           K    HK+ KY + + F    S   G  +V+GSED+ VY  ++Q+KE    V KLQGH  
Sbjct: 246 KTYTGHKNEKYCIFANF----SVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTD 298

Query: 191 PVLGVSFNYDESLLATSDYQG--LIILW 216
            V+  + +  E+L+A++  +    I LW
Sbjct: 299 VVISAACHPTENLIASAALENDKTIKLW 326

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q8BHD1|POC1B_MOUSE POC1 centriolar protein homolog B OS=Mus musculus GN=Poc1b PE=1 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 6/112 (5%)

Query: 106 LVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFRE-GACVVTGSE 164
            V+   N  CI      + AV++     +N     YQV S     +SF   G  +VT S 
Sbjct: 191 FVDFNPNGTCIASA-GSDHAVKI-WDIRMNKLLQHYQVHSCGVNCLSFHPLGNSLVTASS 248

Query: 165 DSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILW 216
           D  V  LD+        +  LQGH  PV  VSF+ D  LL +      +++W
Sbjct: 249 DGTVKMLDLIEGR---LIYTLQGHTGPVFTVSFSKDGELLTSGGADAQVLIW 297

Required for ciliogenesis.

Mus musculus (taxid: 10090)

>sp|Q5RE95|WDR5B_PONAB WD repeat-containing protein 5B OS=Pongo abelii PE=2 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 9/88 (10%)

Query: 131 KFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHAC 190
           K    HK+ KY + + F    S   G  +V+GSED+ VY  ++Q+KE    V KLQGH  
Sbjct: 246 KTYTGHKNEKYCIFANF----SVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTD 298

Query: 191 PVLGVSFNYDESLLATSDYQG--LIILW 216
            V+  + +  E+L+A++  +    I LW
Sbjct: 299 VVISAACHPTENLIASAALENDKTIKLW 326

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Pongo abelii (taxid: 9601)

>sp|Q5M786|WDR5_XENTR WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 9/86 (10%)

Query: 136 HKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGV 195
           HK+ KY + + F    S   G  +V+GSED+ VY  ++Q+KE    V KLQGH   V+  
Sbjct: 255 HKNEKYCIFANF----SVTGGKWIVSGSEDNLVYIWNLQTKE---VVQKLQGHTDVVIST 307

Query: 196 SFNYDESLLATSDYQG--LIILWSRE 219
           + +  E+++A++  +    I LW  +
Sbjct: 308 ACHPTENIIASAALENDKTIKLWKSD 333

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Xenopus tropicalis (taxid: 8364)

>sp|Q498M4|WDR5_RAT WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)

Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
           +AA     LK+ D      LK      HK+ KY + + F    S   G  +V+GSED+ V
Sbjct: 230 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 283

Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
           Y  ++Q+KE    V KLQGH   V+  + +  E+++A++  +    I LW  +
Sbjct: 284 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
242005801	456	F-box/WD-repeat protein pof1, putative [	0.708	0.346	0.654	3e-54
390363690	485	PREDICTED: WD repeat-containing protein	0.717	0.329	0.603	8e-51
91092992	398	PREDICTED: similar to Wdr13 protein [Tri	0.704	0.394	0.610	2e-50
443705598	473	hypothetical protein CAPTEDRAFT_165912 [	0.704	0.331	0.571	2e-47
291241663	472	PREDICTED: WD repeat domain 13 protein-l	0.708	0.334	0.543	3e-47
260824179	470	hypothetical protein BRAFLDRAFT_57357 [B	0.708	0.336	0.549	2e-46
22087520	485	memory-related protein [Mus musculus] gi	0.708	0.325	0.567	2e-46
261878588	485	WD repeat-containing protein 13 isoform	0.708	0.325	0.567	2e-46
328671711	482	WDR13 protein [Clarias batrachus]	0.708	0.327	0.567	2e-46
328724929	466	PREDICTED: WD repeat-containing protein	0.654	0.313	0.617	2e-46

>gi|242005801|ref|XP_002423749.1| F-box/WD-repeat protein pof1, putative [Pediculus humanus corporis] gi|212506951|gb|EEB11011.1| F-box/WD-repeat protein pof1, putative [Pediculus humanus corporis]

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 106/162 (65%), Positives = 134/162 (82%), Gaps = 4/162 (2%)

Query: 60  GVIVSILCD-DLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK 118
           G+I S   + + G+L K K+++++ + P+TCLSW++WISREARDPTLLVN AAN +C+ +
Sbjct: 298 GIITSFQFESETGKLHKKKKIIIADNRPVTCLSWKAWISREARDPTLLVNCAANVLCLYR 357

Query: 119 VLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEH 178
           V + EG ++LK+KFN+ HKS    +RSTFCP+MSFR+GACVVTGSEDSCVYF+DI+ KE 
Sbjct: 358 VENAEGGLKLKKKFNIRHKSE--LLRSTFCPMMSFRQGACVVTGSEDSCVYFIDIE-KEE 414

Query: 179 KNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK 220
           K  VNKLQGHACPVLGVSFNYDESLLATSD QGL+I+W R K
Sbjct: 415 KPIVNKLQGHACPVLGVSFNYDESLLATSDVQGLVIIWKRGK 456

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390363690|ref|XP_786641.3| PREDICTED: WD repeat-containing protein 13-like [Strongylocentrotus purpuratus]

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 99/164 (60%), Positives = 126/164 (76%), Gaps = 4/164 (2%)

Query: 60  GVIVSILCD-DLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK 118
           GVI S   D   G+L+KGKRLV+ +  PITC+S+R+W+SREARDP LL+N A N +C+ K
Sbjct: 317 GVISSFQYDMATGKLTKGKRLVVCEGSPITCISFRAWVSREARDPLLLINCAINQLCLYK 376

Query: 119 VLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEH 178
           +   +G V LK+ F++ H+  K  +RS+FCP+MSFREGACVVTGSED  VYF DI+ K  
Sbjct: 377 ITSSDGEVSLKKTFSIKHR--KETIRSSFCPLMSFREGACVVTGSEDLSVYFFDIERKL- 433

Query: 179 KNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE 222
           K  VNKLQGH+ PVLGVSFNYDESLLATSD +GL+I+W R++ E
Sbjct: 434 KPCVNKLQGHSAPVLGVSFNYDESLLATSDAEGLVIVWKRQQDE 477

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|91092992|ref|XP_968169.1| PREDICTED: similar to Wdr13 protein [Tribolium castaneum]

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/159 (61%), Positives = 121/159 (76%), Gaps = 2/159 (1%)

Query: 60  GVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKV 119
           G IVS+ C+  G L K K+++LS +C IT LS+R+WISREARDP LLVN   N+ C+  V
Sbjct: 238 GEIVSLFCELNGALCKTKKILLSPNCSITSLSYRAWISREARDPLLLVNATNNSFCLFSV 297

Query: 120 LDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHK 179
           LD EG +QLK+ F   ++  K+ VRSTFCPIMSFR+GACVVTGSED  VYF+D++   ++
Sbjct: 298 LDGEGTLQLKKSFQ--NRQQKHIVRSTFCPIMSFRQGACVVTGSEDGSVYFVDVEKVGNR 355

Query: 180 NAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSR 218
             VN LQGHA  VLG+SFNYDESLLATSD QGL+ILW +
Sbjct: 356 AVVNTLQGHASAVLGISFNYDESLLATSDLQGLVILWKK 394

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443705598|gb|ELU02066.1| hypothetical protein CAPTEDRAFT_165912 [Capitella teleta]

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/161 (57%), Positives = 119/161 (73%), Gaps = 4/161 (2%)

Query: 60  GVIVSILCD-DLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK 118
           G I S L D   G+L+K KR+ + +  P+TC+S R WISREARDP+LL N   NA+C+ K
Sbjct: 312 GFIFSFLFDVASGKLTKAKRITVCEGSPVTCMSARMWISREARDPSLLANCGVNALCLFK 371

Query: 119 VLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEH 178
           +  ++G++QLKR F +  K  +  VRSTFCP+MSFR+GACVVTGSED  VYF DI+ +E 
Sbjct: 372 IATEDGSLQLKRTFPI--KQQREAVRSTFCPLMSFRQGACVVTGSEDCSVYFFDIE-REQ 428

Query: 179 KNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE 219
           K  +NKLQGH+ PVL V FNYDES+LA+ D QGL+I+W RE
Sbjct: 429 KQCLNKLQGHSAPVLDVCFNYDESMLASCDSQGLVIVWKRE 469

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|291241663|ref|XP_002740728.1| PREDICTED: WD repeat domain 13 protein-like [Saccoglossus kowalevskii]

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/162 (54%), Positives = 125/162 (77%), Gaps = 4/162 (2%)

Query: 60  GVIVSILCDDL-GRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK 118
           G+I S LCD + G+L++ KR+V+ +  PIT LS  +W+SREARDP+LL N A N++C+ +
Sbjct: 311 GLIFSFLCDVMSGKLTRCKRMVICEGSPITSLSCGTWLSREARDPSLLANCAINSLCLFR 370

Query: 119 VLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEH 178
           + D +G +QLKRKF + H+S   Q++S FCP++SFR+GAC+V+GSED CV+F D++ +  
Sbjct: 371 ITDTDGGLQLKRKFGIKHRS--LQIKSIFCPLISFRQGACIVSGSEDMCVHFFDVE-RAK 427

Query: 179 KNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK 220
           K  +NKLQGH+  VL VSFNYDESLLA+SD  GL+I+W RE+
Sbjct: 428 KPLINKLQGHSASVLSVSFNYDESLLASSDSDGLVIIWKREQ 469

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|260824179|ref|XP_002607045.1| hypothetical protein BRAFLDRAFT_57357 [Branchiostoma floridae] gi|229292391|gb|EEN63055.1| hypothetical protein BRAFLDRAFT_57357 [Branchiostoma floridae]

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/162 (54%), Positives = 125/162 (77%), Gaps = 4/162 (2%)

Query: 60  GVIVSILCD-DLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK 118
           G + S   D   G+LS+ +RLV+ +  PITC+S RSW+SREARDP+LL+N  ANA+C+ +
Sbjct: 310 GCVYSFAFDVGTGKLSRAQRLVVCEGHPITCISARSWMSREARDPSLLINCGANALCLYR 369

Query: 119 VLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEH 178
           V   EG++QLKRKF +  ++   ++RS FCP+MSFR+GACVV+GSED  VYF D++ + +
Sbjct: 370 VSGVEGSLQLKRKFPIKQRN--LRIRSGFCPLMSFRQGACVVSGSEDMSVYFFDVE-RSN 426

Query: 179 KNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK 220
           K  VNKLQGH+ PV+ VSFNYDESLLA++D +G++I+W RE+
Sbjct: 427 KPVVNKLQGHSAPVIDVSFNYDESLLASADSEGMVIVWKREQ 468

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|22087520|gb|AAM90957.1|AF513713_1 memory-related protein [Mus musculus] gi|26383104|dbj|BAB30800.2| unnamed protein product [Mus musculus]

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/162 (56%), Positives = 122/162 (75%), Gaps = 4/162 (2%)

Query: 60  GVIVSILCD-DLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK 118
           G + S L D   G+L+K KRLV+ +  P+T +S RSW+SREARDP+LL+N   N + + +
Sbjct: 326 GSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYR 385

Query: 119 VLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEH 178
           V+D EGA+QLKR F +  + S + VRS FCP+MSFR+GACVVTGSED CV+F D++ +  
Sbjct: 386 VVDNEGALQLKRSFPI--EQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVE-RAA 442

Query: 179 KNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK 220
           K AVNKLQGH+ PVL VSFN DESLLA+SD  G++I+W RE+
Sbjct: 443 KAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQ 484

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|261878588|ref|NP_080413.2| WD repeat-containing protein 13 isoform 1 [Mus musculus] gi|20140638|sp|Q91V09.1|WDR13_MOUSE RecName: Full=WD repeat-containing protein 13 gi|13751860|gb|AAK38600.1|AF353243_1 putative WD-repeat protein [Mus musculus] gi|13751862|gb|AAK38601.1|AF353244_1 WD-repeat protein [Mus musculus] gi|80478677|gb|AAI08333.1| WD repeat domain 13 [Mus musculus] gi|111307336|gb|AAI20554.1| WD repeat domain 13 [Mus musculus] gi|116138447|gb|AAI25288.1| WD repeat domain 13 [Mus musculus] gi|148702002|gb|EDL33949.1| WD repeat domain 13, isoform CRA_b [Mus musculus] gi|149028414|gb|EDL83799.1| WD repeat domain 13 (predicted), isoform CRA_a [Rattus norvegicus]

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/162 (56%), Positives = 122/162 (75%), Gaps = 4/162 (2%)

Query: 60  GVIVSILCD-DLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK 118
           G + S L D   G+L+K KRLV+ +  P+T +S RSW+SREARDP+LL+N   N + + +
Sbjct: 326 GSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYR 385

Query: 119 VLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEH 178
           V+D EGA+QLKR F +  + S + VRS FCP+MSFR+GACVVTGSED CV+F D++ +  
Sbjct: 386 VVDNEGALQLKRSFPI--EQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVE-RAA 442

Query: 179 KNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK 220
           K AVNKLQGH+ PVL VSFN DESLLA+SD  G++I+W RE+
Sbjct: 443 KAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQ 484

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|328671711|gb|AEB26713.1| WDR13 protein [Clarias batrachus]

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/162 (56%), Positives = 120/162 (74%), Gaps = 4/162 (2%)

Query: 60  GVIVSILCD-DLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK 118
           G I S L D   G+L+K KRLV+S+  PI+ +S RSWISREARDP+LL+N   N + + +
Sbjct: 323 GSIFSFLFDMATGKLTKAKRLVVSEGSPISSISARSWISREARDPSLLINACVNKLLLYR 382

Query: 119 VLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEH 178
           V+D EG +Q+KR F + H S    + S FCP+MSFR+GACVVTGSED+CVYF D++ +  
Sbjct: 383 VVDNEGTLQMKRSFPIQHGSQ--HLHSIFCPLMSFRQGACVVTGSEDACVYFFDVE-RNT 439

Query: 179 KNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK 220
           K  VNKLQGH+ PVL VSFN DESLLA+SD  G++I+W RE+
Sbjct: 440 KAIVNKLQGHSGPVLDVSFNCDESLLASSDATGMVIIWRREQ 481

Source: Clarias batrachus

Species: Clarias batrachus

Genus: Clarias

Family: Clariidae

Order: Siluriformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|328724929|ref|XP_003248290.1| PREDICTED: WD repeat-containing protein 13-like [Acyrthosiphon pisum]

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/149 (61%), Positives = 118/149 (79%), Gaps = 3/149 (2%)

Query: 73  LSKGKRLVLSQD-CPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEG-AVQLKR 130
           L+K  R++ S +   ITCLSWRSWISREARDP LL N A N +C+ KV + +G ++ LK+
Sbjct: 311 LTKCHRIITSPNRGAITCLSWRSWISREARDPMLLANCANNILCLYKVSENDGGSLYLKK 370

Query: 131 KFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHAC 190
           KF V+H  S + +RSTFCPIMSFR+GACVVT SEDSC+YF+D++ +E    VNKLQGHAC
Sbjct: 371 KFLVHHARSNHLLRSTFCPIMSFRQGACVVTSSEDSCIYFVDVE-RESNYTVNKLQGHAC 429

Query: 191 PVLGVSFNYDESLLATSDYQGLIILWSRE 219
             LGV+FNYDE++LATSD QG+II+WSR+
Sbjct: 430 VTLGVTFNYDETILATSDVQGIIIIWSRQ 458

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
MGI|MGI:1914661	485	Wdr13 "WD repeat domain 13" [M	0.708	0.325	0.567	9.9e-56
RGD|1560982	485	Wdr13 "WD repeat domain 13" [R	0.708	0.325	0.567	9.9e-56
UNIPROTKB|Q08D81	485	WDR13 "Uncharacterized protein	0.708	0.325	0.561	2.6e-55
UNIPROTKB|Q9H1Z4	485	WDR13 "WD repeat-containing pr	0.708	0.325	0.561	2.6e-55
ZFIN|ZDB-GENE-050522-274	485	wdr13 "WD repeat domain 13" [D	0.708	0.325	0.561	6.9e-53
DICTYBASE|DDB_G0291596	487	wdr13 "WD40 repeat-containing	0.636	0.291	0.397	3.5e-22
TAIR|locus:504956067	482	AT2G16405 "AT2G16405" [Arabido	0.883	0.408	0.330	8e-22
TAIR|locus:2097435	317	WDR5a "AT3G49660" [Arabidopsis	0.372	0.261	0.3	5.1e-05
FB|FBgn0040066	361	wds "will die slowly" [Drosoph	0.457	0.282	0.336	0.00015
UNIPROTKB|G3N3E5	308	WDR5 "WD repeat-containing pro	0.457	0.331	0.318	0.00033

MGI|MGI:1914661 Wdr13 "WD repeat domain 13" [Mus musculus (taxid:10090)]

 Score = 473 (171.6 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
 Identities = 92/162 (56%), Positives = 122/162 (75%)

Query:    60 GVIVSILCD-DLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK 118
             G + S L D   G+L+K KRLV+ +  P+T +S RSW+SREARDP+LL+N   N + + +
Sbjct:   326 GSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYR 385

Query:   119 VLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEH 178
             V+D EGA+QLKR F +  + S + VRS FCP+MSFR+GACVVTGSED CV+F D++ +  
Sbjct:   386 VVDNEGALQLKRSFPI--EQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVE-RAA 442

Query:   179 KNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK 220
             K AVNKLQGH+ PVL VSFN DESLLA+SD  G++I+W RE+
Sbjct:   443 KAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQ 484

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1560982 Wdr13 "WD repeat domain 13" [Rattus norvegicus (taxid:10116)]

 Score = 473 (171.6 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
 Identities = 92/162 (56%), Positives = 122/162 (75%)

Query:    60 GVIVSILCD-DLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK 118
             G + S L D   G+L+K KRLV+ +  P+T +S RSW+SREARDP+LL+N   N + + +
Sbjct:   326 GSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYR 385

Query:   119 VLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEH 178
             V+D EGA+QLKR F +  + S + VRS FCP+MSFR+GACVVTGSED CV+F D++ +  
Sbjct:   386 VVDNEGALQLKRSFPI--EQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVE-RAA 442

Query:   179 KNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK 220
             K AVNKLQGH+ PVL VSFN DESLLA+SD  G++I+W RE+
Sbjct:   443 KAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQ 484

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q08D81 WDR13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 469 (170.2 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
 Identities = 91/162 (56%), Positives = 121/162 (74%)

Query:    60 GVIVSILCD-DLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK 118
             G + S L D   G+L+K KRLV+ +  P+T +S RSW+SREARDP+LL+N   N + + +
Sbjct:   326 GSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYR 385

Query:   119 VLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEH 178
             V+D EG +QLKR F +  + S + VRS FCP+MSFR+GACVVTGSED CV+F D++ +  
Sbjct:   386 VVDNEGTLQLKRSFPI--EQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVE-RAA 442

Query:   179 KNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK 220
             K AVNKLQGH+ PVL VSFN DESLLA+SD  G++I+W RE+
Sbjct:   443 KAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQ 484

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9H1Z4 WDR13 "WD repeat-containing protein 13" [Homo sapiens (taxid:9606)]

 Score = 469 (170.2 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
 Identities = 91/162 (56%), Positives = 121/162 (74%)

Query:    60 GVIVSILCD-DLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK 118
             G + S L D   G+L+K KRLV+ +  P+T +S RSW+SREARDP+LL+N   N + + +
Sbjct:   326 GSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYR 385

Query:   119 VLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEH 178
             V+D EG +QLKR F +  + S + VRS FCP+MSFR+GACVVTGSED CV+F D++ +  
Sbjct:   386 VVDNEGTLQLKRSFPI--EQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVE-RAA 442

Query:   179 KNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK 220
             K AVNKLQGH+ PVL VSFN DESLLA+SD  G++I+W RE+
Sbjct:   443 KAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQ 484

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

ZFIN|ZDB-GENE-050522-274 wdr13 "WD repeat domain 13" [Danio rerio (taxid:7955)]

 Score = 453 (164.5 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
 Identities = 91/162 (56%), Positives = 118/162 (72%)

Query:    60 GVIVSILCD-DLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK 118
             G I S L D   G+L+K KRLV+++   I+ +S RSWISREARDP+LLVN   N + + +
Sbjct:   322 GSIFSFLFDMATGKLTKAKRLVVNEGSSISSISARSWISREARDPSLLVNACVNKLLLYR 381

Query:   119 VLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEH 178
             V+D EG +QLKR F + H S    + S FCP+MSFR+GACVVTGSED+CVYF D++ +  
Sbjct:   382 VVDNEGTLQLKRSFPIQHGSQP--LHSIFCPLMSFRQGACVVTGSEDACVYFFDVE-RNT 438

Query:   179 KNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK 220
             K  VNKLQGH+ PVL VSFN DESLLA+SD  G++ +W RE+
Sbjct:   439 KAIVNKLQGHSGPVLDVSFNCDESLLASSDASGMVKIWRREQ 480

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0291596 wdr13 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 242 (90.2 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
 Identities = 62/156 (39%), Positives = 91/156 (58%)

Query:    71 GRLSK-GKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANA------VCILKVLDKE 123
             G LS   K  + +   PIT +    W S   + P L  +I +N+      V I+K L   
Sbjct:   332 GNLSMVSKTQITNNSMPITSIQVHYWYSNAQKPPVL--SILSNSKDSKMRVFIVKSLST- 388

Query:   124 GAVQLKRKFNVNHKSSKYQVRSTFCPIMSF-REGACVVTGSEDSCVYFLDIQSKEHKNAV 182
             G+  L R+ NV  KS    ++S F P+++  R+GA +VTGSEDS +Y  DI  K+ K  +
Sbjct:   389 GSFVLFREINVPCKS--LSIKSCFSPLVTKNRQGAFLVTGSEDSIIYIYDINKKD-KPCI 445

Query:   183 NKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSR 218
             N+L GHA  V+ V++N+DESLLAT D  G++I+W+R
Sbjct:   446 NQLMGHASAVIDVAWNHDESLLATCDTSGIVIIWNR 481

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:504956067 AT2G16405 "AT2G16405" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 8.0e-22, P = 8.0e-22
 Identities = 69/209 (33%), Positives = 112/209 (53%)

Query:    18 NAHRVAKHANLRTLYIRRRNQLLRENSATTSDQLRNDQL----RSTGVIVSILCDD-LGR 72
             NA++     N  T  I ++  LL E+  T+ D     Q+       G + S+  D   G 
Sbjct:   277 NANKELTVFNFSTGRIIKK--LLFEDEVTSMDHDHTGQIIFCGDGQGTVYSVSMDSHTGS 334

Query:    73 LSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKV-LDKEGAVQLKRK 131
             LS+  R   +   P+T + +RS+ S  A  P LL       +    V L  +G + L+  
Sbjct:   335 LSRSHRHRTNHKSPVTTVKYRSF-SLLASGPVLLTCTQDGNLSFFSVALQIKGYLTLRCS 393

Query:   132 FNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACP 191
               +  +   ++++++FCP++S  +G  +V GSEDS VYF D+   +H   VNKLQGH  P
Sbjct:   394 LKLAPRI--HRIQASFCPLLSLEKGEYIVAGSEDSNVYFYDLTKPKH-TCVNKLQGHRFP 450

Query:   192 VLGVSFNYDESLLATSDYQGLIILWSREK 220
             V+ V++N+ E+LLA+SD+ G++I+W R K
Sbjct:   451 VMCVAWNHGENLLASSDFYGVVIVWKRAK 479

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2097435 WDR5a "AT3G49660" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 5.1e-05, P = 5.1e-05
 Identities = 27/90 (30%), Positives = 51/90 (56%)

Query:   131 KFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHAC 190
             K    H +++Y + S F    S   G  +V+GSED+CV+  ++ SK+    + KL+GH  
Sbjct:   234 KTYTGHVNAQYCISSAF----SVTNGKRIVSGSEDNCVHMWELNSKK---LLQKLEGHTE 286

Query:   191 PVLGVSFNYDESLLATSDYQGLIILWSREK 220
              V+ V+ +  E+L+A+      + +W+++K
Sbjct:   287 TVMNVACHPTENLIASGSLDKTVRIWTQKK 316

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0042393 "histone binding" evidence=IDA

GO:0048188 "Set1C/COMPASS complex" evidence=IPI

FB|FBgn0040066 wds "will die slowly" [Drosophila melanogaster (taxid:7227)]

 Score = 116 (45.9 bits), Expect = 0.00015, P = 0.00015
 Identities = 38/113 (33%), Positives = 57/113 (50%)

Query:   109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
             +AA     LK+ D      LK      HK+ KY + + F    S   G  +V+GSED+ V
Sbjct:   257 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNMV 310

Query:   169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
             Y  ++QSKE    V KLQGH   VL  + +  E+++A++  +    I LW  +
Sbjct:   311 YIWNLQSKE---VVQKLQGHTDTVLCTACHPTENIIASAALENDKTIKLWKSD 360

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IPI

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0004402 "histone acetyltransferase activity" evidence=IDA

GO:0016573 "histone acetylation" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

GO:0051568 "histone H3-K4 methylation" evidence=IMP;IDA

GO:0044665 "MLL1/2 complex" evidence=ISS

GO:0044666 "MLL3/4 complex" evidence=IDA

UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 112 (44.5 bits), Expect = 0.00033, P = 0.00033
 Identities = 36/113 (31%), Positives = 57/113 (50%)

Query:   109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
             +AA     LK+ D      LK      HK+ KY + + F    S   G  +V+GSED+ V
Sbjct:   204 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 257

Query:   169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
             Y  ++Q+KE    V KLQGH   V+  + +  E+++A++  +    I LW  +
Sbjct:   258 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 307

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RF24	WDR13_PONAB	No assigned EC number	0.5617	0.7085	0.3257	yes	N/A
Q6DKP5	WDR13_PANTR	No assigned EC number	0.5617	0.7085	0.3257	yes	N/A
Q9H1Z4	WDR13_HUMAN	No assigned EC number	0.5617	0.7085	0.3257	yes	N/A
Q91V09	WDR13_MOUSE	No assigned EC number	0.5679	0.7085	0.3257	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	223
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-05
smart00320	40	smart00320, WD40, WD40 repeats	9e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.001
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 21/135 (15%)

Query: 86  PITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS 145
            +TC+++       + D  LL   + +    +KV D E    L+      H      VR 
Sbjct: 11  GVTCVAF-------SPDGKLLATGSGD--GTIKVWDLETGELLRT--LKGHTGP---VRD 56

Query: 146 TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLA 205
               + +  +G  + +GS D  +   D+++ E    V  L GH   V  V+F+ D  +L+
Sbjct: 57  ----VAASADGTYLASGSSDKTIRLWDLETGE---CVRTLTGHTSYVSSVAFSPDGRILS 109

Query: 206 TSDYQGLIILWSREK 220
           +S     I +W  E 
Sbjct: 110 SSSRDKTIKVWDVET 124

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.2 bits (100), Expect = 6e-05
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)

Query: 149 PIMSF-REGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATS 207
            + SF  +G+ + +GS D  +   D++S    + +  L GH+  VL V+F+ D  LLA+ 
Sbjct: 245 VVSSFSPDGSLLASGSSDGTIRLWDLRS--SSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302

Query: 208 DYQGLIILWSREKHE 222
              G + LW  E  +
Sbjct: 303 SSDGTVRLWDLETGK 317

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.8 bits (83), Expect = 9e-04
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 182 VNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWS 217
           +  L+GH  PV  V+F+ D   LA+    G I LW 
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.0 bits (81), Expect = 0.001
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 182 VNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWS 217
           +  L+GH  PV  V+F+ D +LLA+    G + +W 
Sbjct: 4   LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWS 217
           + + S D  +   D+++ +       L+GH   V  V+F+ D + +A+S   G I LW 
Sbjct: 108 LSSSSRDKTIKVWDVETGKCLTT---LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD 163

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
KOG0272|consensus	459		99.91
KOG0263|consensus	707		99.91
KOG0272|consensus	459		99.91
KOG0271|consensus	480		99.9
KOG0263|consensus	707		99.89
KOG0286|consensus	343		99.87
KOG0273|consensus	524		99.86
KOG0266|consensus	456		99.86
KOG0284|consensus	464		99.86
KOG0279|consensus	315		99.85
KOG0271|consensus	480		99.85
KOG0285|consensus	460		99.84
KOG0645|consensus	312		99.83
KOG0284|consensus	464		99.83
PTZ00421	493	coronin; Provisional	99.83
KOG0275|consensus	508		99.82
KOG0319|consensus	775		99.82
KOG0295|consensus	406		99.82
KOG0296|consensus	399		99.82
KOG0266|consensus	456		99.82
KOG0265|consensus	338		99.82
KOG0291|consensus	893		99.81
KOG0276|consensus	794		99.81
KOG0315|consensus	311		99.8
KOG0279|consensus	315		99.8
KOG0286|consensus	343		99.8
KOG0289|consensus	506		99.79
KOG0273|consensus	524		99.79
KOG0302|consensus	440		99.79
KOG0293|consensus	519		99.79
KOG0292|consensus	1202		99.78
KOG0318|consensus	603		99.77
KOG0295|consensus	406		99.77
PTZ00420	568	coronin; Provisional	99.77
KOG0319|consensus	775		99.77
KOG0316|consensus	307		99.77
KOG0310|consensus	487		99.77
PTZ00421	493	coronin; Provisional	99.76
KOG0772|consensus	641		99.76
KOG0645|consensus	312		99.76
KOG0283|consensus	712		99.76
KOG0283|consensus	712		99.75
KOG0281|consensus	499		99.75
KOG0306|consensus	888		99.75
KOG0278|consensus	334		99.75
KOG0276|consensus	794		99.74
KOG0264|consensus	422		99.74
KOG0282|consensus	503		99.74
KOG0285|consensus	460		99.74
KOG0315|consensus	311		99.74
KOG0277|consensus	311		99.74
KOG0282|consensus	503		99.73
KOG0300|consensus	481		99.73
KOG0640|consensus	430		99.73
KOG0269|consensus	839		99.72
KOG0643|consensus	327		99.72
KOG0265|consensus	338		99.72
KOG0316|consensus	307		99.72
KOG0291|consensus	893		99.72
KOG0313|consensus	423		99.72
KOG4283|consensus	397		99.71
KOG0303|consensus	472		99.71
KOG0318|consensus	603		99.71
PLN00181	793	protein SPA1-RELATED; Provisional	99.7
PTZ00420	568	coronin; Provisional	99.7
KOG0313|consensus	423		99.69
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.69
KOG0277|consensus	311		99.69
KOG0294|consensus	362		99.68
KOG0647|consensus	347		99.68
KOG0264|consensus	422		99.68
KOG0310|consensus	487		99.68
KOG0281|consensus	499		99.67
KOG0973|consensus	942		99.67
KOG0640|consensus	430		99.66
KOG0973|consensus	942		99.65
KOG0302|consensus	440		99.65
KOG1445|consensus	1012		99.64
KOG0275|consensus	508		99.63
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.63
PLN00181	793	protein SPA1-RELATED; Provisional	99.63
KOG0643|consensus	327		99.63
KOG1407|consensus	313		99.62
KOG0293|consensus	519		99.62
KOG0274|consensus	537		99.62
KOG0305|consensus	484		99.62
KOG0267|consensus	825		99.61
KOG0267|consensus	825		99.61
KOG0292|consensus	1202		99.61
KOG0306|consensus	888		99.61
KOG1034|consensus	385		99.61
KOG1446|consensus	311		99.6
KOG0274|consensus	537		99.6
KOG0308|consensus	735		99.58
KOG4283|consensus	397		99.58
KOG0641|consensus	350		99.58
KOG0641|consensus	350		99.57
KOG0289|consensus	506		99.57
KOG0305|consensus	484		99.57
KOG0646|consensus	476		99.56
KOG1332|consensus	299		99.55
KOG0772|consensus	641		99.54
KOG0308|consensus	735		99.54
KOG0269|consensus	839		99.54
KOG0301|consensus	745		99.54
KOG1446|consensus	311		99.54
KOG0639|consensus	705		99.53
KOG0294|consensus	362		99.53
KOG1332|consensus	299		99.53
KOG0278|consensus	334		99.52
KOG1407|consensus	313		99.51
KOG0288|consensus	459		99.51
KOG0296|consensus	399		99.49
KOG0288|consensus	459		99.49
KOG1007|consensus	370		99.47
KOG0299|consensus	479		99.46
KOG1036|consensus	323		99.46
KOG2096|consensus	420		99.45
KOG0321|consensus	720		99.45
KOG1274|consensus	933		99.45
KOG0647|consensus	347		99.44
KOG0300|consensus	481		99.43
KOG0299|consensus	479		99.43
KOG1408|consensus	1080		99.43
KOG0646|consensus	476		99.43
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.43
KOG1539|consensus	910		99.41
KOG1036|consensus	323		99.41
KOG0270|consensus	463		99.41
KOG1539|consensus	910		99.4
KOG1273|consensus	405		99.4
KOG0270|consensus	463		99.39
KOG4328|consensus	498		99.39
KOG0649|consensus	325		99.39
KOG2394|consensus	636		99.38
KOG1445|consensus	1012		99.38
KOG0290|consensus	364		99.36
KOG1188|consensus	376		99.36
KOG1273|consensus	405		99.36
KOG0644|consensus	1113		99.36
KOG1063|consensus	764		99.36
KOG1007|consensus	370		99.36
KOG0301|consensus	745		99.34
KOG2048|consensus	691		99.33
KOG1274|consensus	933		99.33
KOG1310|consensus	758		99.32
KOG0268|consensus	433		99.31
KOG4378|consensus	673		99.29
KOG1009|consensus	434		99.28
KOG1063|consensus	764		99.28
KOG1408|consensus	1080		99.27
KOG2445|consensus	361		99.27
KOG2445|consensus	361		99.26
KOG2919|consensus	406		99.26
KOG1272|consensus	545		99.26
KOG2096|consensus	420		99.26
KOG0322|consensus	323		99.24
KOG0642|consensus	577		99.24
KOG0303|consensus	472		99.24
KOG0290|consensus	364		99.23
KOG0268|consensus	433		99.2
KOG0639|consensus	705		99.19
KOG1009|consensus	434		99.19
KOG2110|consensus	391		99.16
KOG2055|consensus	514		99.16
KOG4328|consensus	498		99.16
KOG2919|consensus	406		99.15
KOG2106|consensus	626		99.15
KOG0307|consensus	1049		99.13
KOG1034|consensus	385		99.13
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.13
KOG0642|consensus	577		99.12
KOG2111|consensus	346		99.11
KOG4378|consensus	673		99.1
KOG2048|consensus	691		99.1
KOG0974|consensus	967		99.09
KOG1188|consensus	376		99.09
KOG0649|consensus	325		99.08
KOG4227|consensus	609		99.07
KOG2055|consensus	514		99.07
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.07
KOG1523|consensus	361		99.06
KOG0307|consensus	1049		99.06
KOG1310|consensus	758		99.06
KOG0280|consensus	339		99.05
KOG2394|consensus	636		99.03
KOG3881|consensus	412		99.02
KOG2110|consensus	391		99.0
KOG0771|consensus	398		98.98
COG2319	466	FOG: WD40 repeat [General function prediction only	98.97
KOG1523|consensus	361		98.97
KOG1524|consensus	737		98.96
KOG2106|consensus	626		98.95
KOG0650|consensus	733		98.93
KOG0321|consensus	720		98.93
KOG4227|consensus	609		98.93
KOG0771|consensus	398		98.9
KOG1524|consensus	737		98.9
COG2319	466	FOG: WD40 repeat [General function prediction only	98.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.88
KOG1517|consensus	1387		98.88
KOG2321|consensus	703		98.87
KOG2111|consensus	346		98.86
KOG2139|consensus	445		98.86
KOG1538|consensus	1081		98.85
KOG0650|consensus	733		98.84
KOG0644|consensus	1113		98.82
KOG1538|consensus	1081		98.79
KOG3914|consensus	390		98.78
KOG4547|consensus	541		98.77
KOG2315|consensus	566		98.75
KOG1587|consensus	555		98.75
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.72
KOG1240|consensus	1431		98.67
KOG1409|consensus	404		98.61
KOG2321|consensus	703		98.59
PRK01742	429	tolB translocation protein TolB; Provisional	98.58
KOG1334|consensus	559		98.55
KOG1272|consensus	545		98.54
KOG0280|consensus	339		98.53
KOG1587|consensus	555		98.51
PRK01742	429	tolB translocation protein TolB; Provisional	98.5
KOG1334|consensus	559		98.5
PRK11028	330	6-phosphogluconolactonase; Provisional	98.5
PRK11028	330	6-phosphogluconolactonase; Provisional	98.49
KOG4532|consensus	344		98.47
PRK03629	429	tolB translocation protein TolB; Provisional	98.47
KOG1963|consensus	792		98.46
PRK05137	435	tolB translocation protein TolB; Provisional	98.45
KOG2139|consensus	445		98.45
KOG0974|consensus	967		98.44
KOG1517|consensus	1387		98.41
KOG3881|consensus	412		98.39
PRK04922	433	tolB translocation protein TolB; Provisional	98.39
KOG4714|consensus	319		98.37
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.34
KOG0322|consensus	323		98.34
PRK05137	435	tolB translocation protein TolB; Provisional	98.34
PRK02889	427	tolB translocation protein TolB; Provisional	98.33
KOG2695|consensus	425		98.29
PRK02889	427	tolB translocation protein TolB; Provisional	98.26
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.26
KOG1963|consensus	792		98.25
KOG0309|consensus	1081		98.23
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.22
PRK03629	429	tolB translocation protein TolB; Provisional	98.21
KOG1409|consensus	404		98.21
KOG4547|consensus	541		98.2
KOG4190|consensus	1034		98.18
KOG1064|consensus	2439		98.15
PRK04922	433	tolB translocation protein TolB; Provisional	98.15
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.14
KOG4497|consensus	447		98.13
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.09
KOG3914|consensus	390		98.08
PRK00178	430	tolB translocation protein TolB; Provisional	98.05
KOG4714|consensus	319		98.05
PRK00178	430	tolB translocation protein TolB; Provisional	98.02
KOG1240|consensus	1431		98.01
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.99
KOG1064|consensus	2439		97.97
PRK01029	428	tolB translocation protein TolB; Provisional	97.91
KOG4497|consensus	447		97.91
PRK04792	448	tolB translocation protein TolB; Provisional	97.88
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.85
PRK01029	428	tolB translocation protein TolB; Provisional	97.84
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.83
KOG2695|consensus	425		97.75
PRK04792	448	tolB translocation protein TolB; Provisional	97.74
COG4946	668	Uncharacterized protein related to the periplasmic	97.68
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.65
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.57
KOG1354|consensus	433		97.55
KOG4532|consensus	344		97.53
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.52
KOG3621|consensus	726		97.52
KOG1354|consensus	433		97.52
KOG2066|consensus	846		97.51
KOG2315|consensus	566		97.49
KOG4640|consensus	665		97.48
KOG0309|consensus	1081		97.48
KOG1645|consensus	463		97.48
KOG1275|consensus	1118		97.38
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.38
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.36
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.36
KOG1275|consensus	1118		97.34
KOG1645|consensus	463		97.29
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.19
KOG2041|consensus	1189		97.18
COG4946	668	Uncharacterized protein related to the periplasmic	97.17
KOG4190|consensus	1034		97.16
KOG2314|consensus	698		97.12
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.1
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.91
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.91
KOG3617|consensus	1416		96.88
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	96.87
PRK04043	419	tolB translocation protein TolB; Provisional	96.87
KOG4649|consensus	354		96.86
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	96.84
PRK04043	419	tolB translocation protein TolB; Provisional	96.83
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.8
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.79
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.77
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	96.63
KOG0882|consensus	558		96.59
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.56
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	96.47
KOG1832|consensus	1516		96.46
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.46
KOG4649|consensus	354		96.44
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.44
KOG2314|consensus	698		96.44
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.42
KOG0882|consensus	558		96.39
KOG2079|consensus	1206		96.31
KOG2444|consensus	238		96.26
KOG1920|consensus	1265		96.22
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.14
KOG1912|consensus	1062		96.12
KOG4640|consensus	665		96.1
KOG1912|consensus	1062		96.07
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.02
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	95.77
KOG2066|consensus	846		95.71
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.56
KOG2041|consensus	1189		95.51
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.37
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.15
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	95.11
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	94.9
KOG2395|consensus	644		94.87
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	94.54
KOG1008|consensus	783		94.48
PRK02888	635	nitrous-oxide reductase; Validated	94.39
KOG1008|consensus	783		94.22
KOG1920|consensus	1265		94.1
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	94.06
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	93.9
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	93.64
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.52
KOG1832|consensus	1516		93.36
KOG2114|consensus	933		93.06
KOG2114|consensus	933		92.87
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	92.81
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.71
KOG2079|consensus	1206		92.5
KOG3617|consensus	1416		92.39
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	92.21
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	91.64
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	91.59
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	91.29
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	90.99
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	90.87
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	90.81
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	90.31
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.69
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	89.19
PRK13616	591	lipoprotein LpqB; Provisional	89.09
KOG3621|consensus	726		88.29
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	88.0
KOG2377|consensus	657		87.73
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	87.06
PRK02888	635	nitrous-oxide reductase; Validated	86.31
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	84.95
COG5167	776	VID27 Protein involved in vacuole import and degra	84.44
KOG1916|consensus	1283		83.69
KOG3630|consensus	1405		83.04
KOG1916|consensus	1283		82.7
KOG4499|consensus	310		82.43
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	82.09
PHA02713	557	hypothetical protein; Provisional	81.67
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	81.63
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	81.61
COG3391	381	Uncharacterized conserved protein [Function unknow	81.27

>KOG0272|consensus

Probab=99.91  E-value=9.5e-24  Score=164.60  Aligned_cols=148  Identities=16%  Similarity=0.260  Sum_probs=129.9

Q ss_pred             cccccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeE
Q psy3599          54 DQLRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVC  115 (223)
Q Consensus        54 ~~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~  115 (223)
                      ++.+|...|..+.|+|+|+++.+.                  ...+| ..+|.+++|.       +||.++++|+.|.  
T Consensus       256 ~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH-s~~v~~iaf~-------~DGSL~~tGGlD~--  325 (459)
T KOG0272|consen  256 DLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH-SKGVFSIAFQ-------PDGSLAATGGLDS--  325 (459)
T ss_pred             hhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccc-ccccceeEec-------CCCceeeccCccc--
Confidence            344778888899999999988665                  23455 8899999999       9999999999999  


Q ss_pred             EEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEE
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGV  195 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v  195 (223)
                      .-+|||+.++.++.. + .||...+  ....|+|     +|..++|||.|++++|||++.   ..+++.+.+|.+-|+.|
T Consensus       326 ~~RvWDlRtgr~im~-L-~gH~k~I--~~V~fsP-----NGy~lATgs~Dnt~kVWDLR~---r~~ly~ipAH~nlVS~V  393 (459)
T KOG0272|consen  326 LGRVWDLRTGRCIMF-L-AGHIKEI--LSVAFSP-----NGYHLATGSSDNTCKVWDLRM---RSELYTIPAHSNLVSQV  393 (459)
T ss_pred             hhheeecccCcEEEE-e-cccccce--eeEeECC-----CceEEeecCCCCcEEEeeecc---cccceecccccchhhhe
Confidence            889999999998874 4 5999996  4448999     899999999999999999999   88899999999999999


Q ss_pred             EEec-CCCEEEEEeCCCcEEEeeCCCCCC
Q psy3599         196 SFNY-DESLLATSDYQGLIILWSREKHEP  223 (223)
Q Consensus       196 ~~~~-~~~~l~s~s~d~~i~iwd~~~~~~  223 (223)
                      .|+| .|.+|+|+|.|++++||..++..|
T Consensus       394 k~~p~~g~fL~TasyD~t~kiWs~~~~~~  422 (459)
T KOG0272|consen  394 KYSPQEGYFLVTASYDNTVKIWSTRTWSP  422 (459)
T ss_pred             EecccCCeEEEEcccCcceeeecCCCccc
Confidence            9999 589999999999999999877553

>KOG0263|consensus

Probab=99.91  E-value=1.9e-23  Score=173.55  Aligned_cols=150  Identities=21%  Similarity=0.290  Sum_probs=131.9

Q ss_pred             ccccccccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCC
Q psy3599          51 LRNDQLRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAAN  112 (223)
Q Consensus        51 ~~~~~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~  112 (223)
                      ....+.+|.|.|+.++|+|+.+++.+.                  .+.+| ..||+++.|+       |-|.+||+++.|
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH-~~PVwdV~F~-------P~GyYFatas~D  514 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH-LAPVWDVQFA-------PRGYYFATASHD  514 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCC-CcceeeEEec-------CCceEEEecCCC
Confidence            344567999999999999977765332                  45667 8999999999       899999999999


Q ss_pred             CeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccC
Q psy3599         113 AVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACP  191 (223)
Q Consensus       113 ~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~  191 (223)
                      +  +.++|.......++ .| .||...   +.| .|+|     +..++++||.|.+|++||+.+   +..+..|.||+++
T Consensus       515 ~--tArLWs~d~~~PlR-if-aghlsD---V~cv~FHP-----Ns~Y~aTGSsD~tVRlWDv~~---G~~VRiF~GH~~~  579 (707)
T KOG0263|consen  515 Q--TARLWSTDHNKPLR-IF-AGHLSD---VDCVSFHP-----NSNYVATGSSDRTVRLWDVST---GNSVRIFTGHKGP  579 (707)
T ss_pred             c--eeeeeecccCCchh-hh-cccccc---cceEEECC-----cccccccCCCCceEEEEEcCC---CcEEEEecCCCCc
Confidence            9  89999988765544 45 599999   776 8999     899999999999999999999   9999999999999


Q ss_pred             EEEEEEecCCCEEEEEeCCCcEEEeeCCCCCC
Q psy3599         192 VLGVSFNYDESLLATSDYQGLIILWSREKHEP  223 (223)
Q Consensus       192 v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~  223 (223)
                      |.+++|+|+|.+|++|+.||.|++||+.++++
T Consensus       580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~  611 (707)
T KOG0263|consen  580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSL  611 (707)
T ss_pred             eEEEEEcCCCceEeecccCCcEEEEEcCCCcc
Confidence            99999999999999999999999999998753

>KOG0272|consensus

Probab=99.91  E-value=4.3e-24  Score=166.54  Aligned_cols=145  Identities=17%  Similarity=0.195  Sum_probs=123.2

Q ss_pred             cccCCcEEEEEECCC--Cceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeE
Q psy3599          56 LRSTGVIVSILCDDL--GRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVC  115 (223)
Q Consensus        56 ~~~~~~i~~~~~~~~--~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~  115 (223)
                      .+|.+.|.++.|.|.  +..+++.                  .+.+| ...|..++|+       |+|.+|++++-|.  
T Consensus       214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH-~~RVs~VafH-------PsG~~L~TasfD~--  283 (459)
T KOG0272|consen  214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGH-LARVSRVAFH-------PSGKFLGTASFDS--  283 (459)
T ss_pred             eccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcc-hhhheeeeec-------CCCceeeeccccc--
Confidence            367777777777773  3223222                  34556 7899999999       9999999999999  


Q ss_pred             EEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEE
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGV  195 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v  195 (223)
                      +|++||+.++..+.. . -||...+  ..++|.|     +|.+++||+.|..-+|||+++   +.++..+.+|...|.+|
T Consensus       284 tWRlWD~~tk~ElL~-Q-EGHs~~v--~~iaf~~-----DGSL~~tGGlD~~~RvWDlRt---gr~im~L~gH~k~I~~V  351 (459)
T KOG0272|consen  284 TWRLWDLETKSELLL-Q-EGHSKGV--FSIAFQP-----DGSLAATGGLDSLGRVWDLRT---GRCIMFLAGHIKEILSV  351 (459)
T ss_pred             chhhcccccchhhHh-h-ccccccc--ceeEecC-----CCceeeccCccchhheeeccc---CcEEEEecccccceeeE
Confidence            999999998876653 2 4999995  4448999     899999999999999999999   99999999999999999


Q ss_pred             EEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         196 SFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       196 ~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .|+|+|..|||||.|++++|||++...
T Consensus       352 ~fsPNGy~lATgs~Dnt~kVWDLR~r~  378 (459)
T KOG0272|consen  352 AFSPNGYHLATGSSDNTCKVWDLRMRS  378 (459)
T ss_pred             eECCCceEEeecCCCCcEEEeeecccc
Confidence            999999999999999999999998643

>KOG0271|consensus

Probab=99.90  E-value=8.3e-23  Score=157.92  Aligned_cols=149  Identities=16%  Similarity=0.260  Sum_probs=131.7

Q ss_pred             cccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEE
Q psy3599          56 LRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCIL  117 (223)
Q Consensus        56 ~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v  117 (223)
                      .+|.+.|.++.|+|+|+.+.+.                  ..+.| ..-|.|++|+       |||..||+|+.++  .|
T Consensus       112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH-~~WVlcvaws-------PDgk~iASG~~dg--~I  181 (480)
T KOG0271|consen  112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGH-KNWVLCVAWS-------PDGKKIASGSKDG--SI  181 (480)
T ss_pred             CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCC-ccEEEEEEEC-------CCcchhhccccCC--eE
Confidence            4899999999999988877554                  45667 8899999999       9999999999999  99


Q ss_pred             EEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEE
Q psy3599         118 KVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVS  196 (223)
Q Consensus       118 ~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~  196 (223)
                      ++||+++++++...+. +|+..   |.+ +|.|....+....+++++.||.|+|||+..   +.++..+.+|..+|+|+.
T Consensus       182 ~lwdpktg~~~g~~l~-gH~K~---It~Lawep~hl~p~~r~las~skDg~vrIWd~~~---~~~~~~lsgHT~~VTCvr  254 (480)
T KOG0271|consen  182 RLWDPKTGQQIGRALR-GHKKW---ITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL---GTCVRTLSGHTASVTCVR  254 (480)
T ss_pred             EEecCCCCCccccccc-Ccccc---eeEEeecccccCCCccceecccCCCCEEEEEccC---ceEEEEeccCccceEEEE
Confidence            9999999999988886 99999   666 898865555678999999999999999999   999999999999999999


Q ss_pred             EecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         197 FNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       197 ~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      |--+ .++.+||.|++|++|+...|.
T Consensus       255 wGG~-gliySgS~DrtIkvw~a~dG~  279 (480)
T KOG0271|consen  255 WGGE-GLIYSGSQDRTIKVWRALDGK  279 (480)
T ss_pred             EcCC-ceEEecCCCceEEEEEccchh
Confidence            9543 579999999999999987653

>KOG0263|consensus

Probab=99.89  E-value=1.6e-22  Score=168.07  Aligned_cols=143  Identities=19%  Similarity=0.351  Sum_probs=126.1

Q ss_pred             ccccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEE
Q psy3599          55 QLRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCI  116 (223)
Q Consensus        55 ~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (223)
                      |.+|...|..+.|.|.|-..++.                  .+.+| ...|.|++|+       |+..++++||.|.  +
T Consensus       489 y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifagh-lsDV~cv~FH-------PNs~Y~aTGSsD~--t  558 (707)
T KOG0263|consen  489 YKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGH-LSDVDCVSFH-------PNSNYVATGSSDR--T  558 (707)
T ss_pred             ecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccc-ccccceEEEC-------CcccccccCCCCc--e
Confidence            34777778888888866555443                  44556 8889999999       9999999999999  9


Q ss_pred             EEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEE
Q psy3599         117 LKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGV  195 (223)
Q Consensus       117 v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v  195 (223)
                      +++||..+|..++ .| .||...   |.+ +|||     .|.+|++|++||.|.+||+.+   +.++..+.+|++.|.++
T Consensus       559 VRlWDv~~G~~VR-iF-~GH~~~---V~al~~Sp-----~Gr~LaSg~ed~~I~iWDl~~---~~~v~~l~~Ht~ti~Sl  625 (707)
T KOG0263|consen  559 VRLWDVSTGNSVR-IF-TGHKGP---VTALAFSP-----CGRYLASGDEDGLIKIWDLAN---GSLVKQLKGHTGTIYSL  625 (707)
T ss_pred             EEEEEcCCCcEEE-Ee-cCCCCc---eEEEEEcC-----CCceEeecccCCcEEEEEcCC---CcchhhhhcccCceeEE
Confidence            9999999998877 56 499999   666 8999     799999999999999999999   99999999999999999


Q ss_pred             EEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         196 SFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       196 ~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      .|+.+|..||+||.|++|++||+..
T Consensus       626 sFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  626 SFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             EEecCCCEEEecCCCCeEEEEEchh
Confidence            9999999999999999999999865

>KOG0286|consensus

Probab=99.87  E-value=9e-21  Score=142.12  Aligned_cols=141  Identities=16%  Similarity=0.250  Sum_probs=120.2

Q ss_pred             CcEEEEEECCCCceeeee------------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeE
Q psy3599          60 GVIVSILCDDLGRLSKGK------------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVC  115 (223)
Q Consensus        60 ~~i~~~~~~~~~~~~~~~------------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~  115 (223)
                      .-|..++|+|.|.+++..                        .+.+| .+-+.++.|.       . ...|+++|.|.  
T Consensus        98 ~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gH-tgylScC~f~-------d-D~~ilT~SGD~--  166 (343)
T KOG0286|consen   98 SWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGH-TGYLSCCRFL-------D-DNHILTGSGDM--  166 (343)
T ss_pred             eeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCc-cceeEEEEEc-------C-CCceEecCCCc--
Confidence            346777788877776433                        45667 8889999997       5 56778888888  


Q ss_pred             EEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEE
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGV  195 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v  195 (223)
                      +.-+||+++++.+. .| .||.+.+  +...++|.    +++.+++|+.|+..++||++.   +.+...|.+|++.|++|
T Consensus       167 TCalWDie~g~~~~-~f-~GH~gDV--~slsl~p~----~~ntFvSg~cD~~aklWD~R~---~~c~qtF~ghesDINsv  235 (343)
T KOG0286|consen  167 TCALWDIETGQQTQ-VF-HGHTGDV--MSLSLSPS----DGNTFVSGGCDKSAKLWDVRS---GQCVQTFEGHESDINSV  235 (343)
T ss_pred             eEEEEEcccceEEE-Ee-cCCcccE--EEEecCCC----CCCeEEecccccceeeeeccC---cceeEeecccccccceE
Confidence            89999999997766 45 4999995  44478885    799999999999999999999   99999999999999999


Q ss_pred             EEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         196 SFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       196 ~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .|.|+|.-|+|||.|++.|+||+|..+
T Consensus       236 ~ffP~G~afatGSDD~tcRlyDlRaD~  262 (343)
T KOG0286|consen  236 RFFPSGDAFATGSDDATCRLYDLRADQ  262 (343)
T ss_pred             EEccCCCeeeecCCCceeEEEeecCCc
Confidence            999999999999999999999999753

>KOG0273|consensus

Probab=99.86  E-value=9.9e-21  Score=149.71  Aligned_cols=128  Identities=20%  Similarity=0.324  Sum_probs=111.7

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCc----cc
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIM----SF  153 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~----~~  153 (223)
                      .+.+| .++|.++.|.       |.+.+|++||+|+  +++||...........  .+|....  .+..|+|..    ++
T Consensus       354 t~~GH-~g~V~alk~n-------~tg~LLaS~SdD~--TlkiWs~~~~~~~~~l--~~Hskei--~t~~wsp~g~v~~n~  419 (524)
T KOG0273|consen  354 TFIGH-HGEVNALKWN-------PTGSLLASCSDDG--TLKIWSMGQSNSVHDL--QAHSKEI--YTIKWSPTGPVTSNP  419 (524)
T ss_pred             eeecc-cCceEEEEEC-------CCCceEEEecCCC--eeEeeecCCCcchhhh--hhhccce--eeEeecCCCCccCCC
Confidence            45666 8999999999       9999999999999  9999998766666544  5999887  344688863    23


Q ss_pred             CCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         154 REGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       154 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ..+..+++++.|++|++||+..   +.++.+|..|..+|.+++|+|+|.++|+|+.||.|.||+.++++
T Consensus       420 ~~~~~l~sas~dstV~lwdv~~---gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~  485 (524)
T KOG0273|consen  420 NMNLMLASASFDSTVKLWDVES---GVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK  485 (524)
T ss_pred             cCCceEEEeecCCeEEEEEccC---CceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence            4677999999999999999999   99999999999999999999999999999999999999998865

>KOG0266|consensus

Probab=99.86  E-value=2.4e-20  Score=155.49  Aligned_cols=142  Identities=24%  Similarity=0.422  Sum_probs=121.3

Q ss_pred             CCcEEEEEECCCCceeeee--------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEE
Q psy3599          59 TGVIVSILCDDLGRLSKGK--------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK  118 (223)
Q Consensus        59 ~~~i~~~~~~~~~~~~~~~--------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~  118 (223)
                      ...|.++.++++|+.+...                    .+..| ...|.+++|+       +++.+++++++|.  +++
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h-~~~v~~~~fs-------~d~~~l~s~s~D~--tir  228 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGH-TRGVSDVAFS-------PDGSYLLSGSDDK--TLR  228 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccccc-ccceeeeEEC-------CCCcEEEEecCCc--eEE
Confidence            5677778888877765332                    12334 7799999999       9999999999999  999


Q ss_pred             EecCC-CceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEE
Q psy3599         119 VLDKE-GAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSF  197 (223)
Q Consensus       119 i~d~~-~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~  197 (223)
                      +||.+ .+..+. .+ .+|...+  ..++|+|     .++++++|+.|++|++||+++   ++++..+++|.+.|++++|
T Consensus       229 iwd~~~~~~~~~-~l-~gH~~~v--~~~~f~p-----~g~~i~Sgs~D~tvriWd~~~---~~~~~~l~~hs~~is~~~f  296 (456)
T KOG0266|consen  229 IWDLKDDGRNLK-TL-KGHSTYV--TSVAFSP-----DGNLLVSGSDDGTVRIWDVRT---GECVRKLKGHSDGISGLAF  296 (456)
T ss_pred             EeeccCCCeEEE-Ee-cCCCCce--EEEEecC-----CCCEEEEecCCCcEEEEeccC---CeEEEeeeccCCceEEEEE
Confidence            99994 445554 55 4999995  4448999     689999999999999999999   9999999999999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         198 NYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       198 ~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +++++.|++++.|+.|++||+.++.
T Consensus       297 ~~d~~~l~s~s~d~~i~vwd~~~~~  321 (456)
T KOG0266|consen  297 SPDGNLLVSASYDGTIRVWDLETGS  321 (456)
T ss_pred             CCCCCEEEEcCCCccEEEEECCCCc
Confidence            9999999999999999999998875

>KOG0284|consensus

Probab=99.86  E-value=2.1e-21  Score=151.10  Aligned_cols=142  Identities=18%  Similarity=0.241  Sum_probs=123.3

Q ss_pred             ccCCcEEEEEECCCCceeeee-----------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK-----------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKV  119 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~-----------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i  119 (223)
                      .|+..|.+++|+.+|....++                 ..+.|+...|.+++|+       |....|++||+|+  .++|
T Consensus       136 aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafS-------pnDskF~t~SdDg--~iki  206 (464)
T KOG0284|consen  136 AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFS-------PNDSKFLTCSDDG--TIKI  206 (464)
T ss_pred             hhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccC-------CCCceeEEecCCC--eEEE
Confidence            588899999999877765443                 4456767999999999       7888899999999  9999


Q ss_pred             ecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEe
Q psy3599         120 LDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFN  198 (223)
Q Consensus       120 ~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~  198 (223)
                      ||........ .+ .||.-.   +++ .|+|     ...+|++||.|..|++||.++   +.|+.++.+|+..|..+.|+
T Consensus       207 Wdf~~~kee~-vL-~GHgwd---VksvdWHP-----~kgLiasgskDnlVKlWDprS---g~cl~tlh~HKntVl~~~f~  273 (464)
T KOG0284|consen  207 WDFRMPKEER-VL-RGHGWD---VKSVDWHP-----TKGLIASGSKDNLVKLWDPRS---GSCLATLHGHKNTVLAVKFN  273 (464)
T ss_pred             EeccCCchhh-ee-ccCCCC---cceeccCC-----ccceeEEccCCceeEeecCCC---cchhhhhhhccceEEEEEEc
Confidence            9987654333 23 488777   666 8999     689999999999999999999   99999999999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEeeCCC
Q psy3599         199 YDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       199 ~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      |++++|+|+|.|..++++|+++
T Consensus       274 ~n~N~Llt~skD~~~kv~DiR~  295 (464)
T KOG0284|consen  274 PNGNWLLTGSKDQSCKVFDIRT  295 (464)
T ss_pred             CCCCeeEEccCCceEEEEehhH
Confidence            9999999999999999999984

>KOG0279|consensus

Probab=99.85  E-value=3.9e-20  Score=137.86  Aligned_cols=143  Identities=20%  Similarity=0.231  Sum_probs=115.3

Q ss_pred             CcEEEEEECCCCceeeee------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeee
Q psy3599          60 GVIVSILCDDLGRLSKGK------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFN  133 (223)
Q Consensus        60 ~~i~~~~~~~~~~~~~~~------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~  133 (223)
                      +...+.+||...+++...      .+.+| ..-|.+++|+       +|...+++++.|.  ++++|+...+ +..+.-.
T Consensus        76 ~~alS~swD~~lrlWDl~~g~~t~~f~GH-~~dVlsva~s-------~dn~qivSGSrDk--Tiklwnt~g~-ck~t~~~  144 (315)
T KOG0279|consen   76 NFALSASWDGTLRLWDLATGESTRRFVGH-TKDVLSVAFS-------TDNRQIVSGSRDK--TIKLWNTLGV-CKYTIHE  144 (315)
T ss_pred             ceEEeccccceEEEEEecCCcEEEEEEec-CCceEEEEec-------CCCceeecCCCcc--eeeeeeeccc-EEEEEec
Confidence            334444555555554332      67778 9999999999       9999999999999  9999998866 3433322


Q ss_pred             ccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCc
Q psy3599         134 VNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGL  212 (223)
Q Consensus       134 ~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~  212 (223)
                      .++++.   +.| .|+|.-   +..+|++++.|+.|++||+++   .+....+.+|.+.++.+.++|||.++++|+.||.
T Consensus       145 ~~~~~W---VscvrfsP~~---~~p~Ivs~s~DktvKvWnl~~---~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~  215 (315)
T KOG0279|consen  145 DSHREW---VSCVRFSPNE---SNPIIVSASWDKTVKVWNLRN---CQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE  215 (315)
T ss_pred             CCCcCc---EEEEEEcCCC---CCcEEEEccCCceEEEEccCC---cchhhccccccccEEEEEECCCCCEEecCCCCce
Confidence            223455   777 899931   267999999999999999999   8888999999999999999999999999999999


Q ss_pred             EEEeeCCCCC
Q psy3599         213 IILWSREKHE  222 (223)
Q Consensus       213 i~iwd~~~~~  222 (223)
                      +.+||++.++
T Consensus       216 ~~LwdL~~~k  225 (315)
T KOG0279|consen  216 AMLWDLNEGK  225 (315)
T ss_pred             EEEEEccCCc
Confidence            9999998775

>KOG0271|consensus

Probab=99.85  E-value=5.8e-21  Score=147.79  Aligned_cols=122  Identities=16%  Similarity=0.268  Sum_probs=107.1

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCc
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGA  157 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~  157 (223)
                      .+.+| .++|.++.|+       |+|..|++|+.|.  ++|+||+.+...+.+.  .+|...+  ++.+|+|     |++
T Consensus       110 S~~GH-~e~Vl~~~fs-------p~g~~l~tGsGD~--TvR~WD~~TeTp~~t~--KgH~~WV--lcvawsP-----Dgk  170 (480)
T KOG0271|consen  110 SIAGH-GEAVLSVQFS-------PTGSRLVTGSGDT--TVRLWDLDTETPLFTC--KGHKNWV--LCVAWSP-----DGK  170 (480)
T ss_pred             ccCCC-CCcEEEEEec-------CCCceEEecCCCc--eEEeeccCCCCcceee--cCCccEE--EEEEECC-----Ccc
Confidence            56778 9999999999       8999999999999  9999999988665543  5999994  4449999     899


Q ss_pred             EEEEecCCCcEEEEEcccCcccc-cceeecccccCEEEEEEec-----CCCEEEEEeCCCcEEEeeCCCC
Q psy3599         158 CVVTGSEDSCVYFLDIQSKEHKN-AVNKLQGHACPVLGVSFNY-----DESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       158 ~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~~~-----~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      .|++|+.||.|++||.++   ++ ....+.+|+..|++++|.|     ....||++|.||+++|||+..+
T Consensus       171 ~iASG~~dg~I~lwdpkt---g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~  237 (480)
T KOG0271|consen  171 KIASGSKDGSIRLWDPKT---GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG  237 (480)
T ss_pred             hhhccccCCeEEEecCCC---CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc
Confidence            999999999999999998   55 4568899999999999987     4678999999999999998764

>KOG0285|consensus

Probab=99.84  E-value=7.2e-20  Score=140.75  Aligned_cols=143  Identities=20%  Similarity=0.242  Sum_probs=124.7

Q ss_pred             ccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK  118 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~  118 (223)
                      +|.|-|.++.++|....+.+.                  .+.+| -..|..++++       +-..|+.++++|+  .|+
T Consensus       149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGh-i~~vr~vavS-------~rHpYlFs~gedk--~VK  218 (460)
T KOG0285|consen  149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGH-IETVRGVAVS-------KRHPYLFSAGEDK--QVK  218 (460)
T ss_pred             hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecch-hheeeeeeec-------ccCceEEEecCCC--eeE
Confidence            899999999999954443322                  44556 7789999999       8888999999999  999


Q ss_pred             EecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEE
Q psy3599         119 VLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSF  197 (223)
Q Consensus       119 i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~  197 (223)
                      .||++..+.++.+  .||-..   +.| ...|     .-+.|++|+.|..+++||+++   ...+..+.+|..+|.+|.+
T Consensus       219 CwDLe~nkvIR~Y--hGHlS~---V~~L~lhP-----Tldvl~t~grDst~RvWDiRt---r~~V~~l~GH~~~V~~V~~  285 (460)
T KOG0285|consen  219 CWDLEYNKVIRHY--HGHLSG---VYCLDLHP-----TLDVLVTGGRDSTIRVWDIRT---RASVHVLSGHTNPVASVMC  285 (460)
T ss_pred             EEechhhhhHHHh--ccccce---eEEEeccc-----cceeEEecCCcceEEEeeecc---cceEEEecCCCCcceeEEe
Confidence            9999999888766  699888   555 7888     589999999999999999999   8899999999999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         198 NYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       198 ~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .|-...++|||.|++|++||++.++
T Consensus       286 ~~~dpqvit~S~D~tvrlWDl~agk  310 (460)
T KOG0285|consen  286 QPTDPQVITGSHDSTVRLWDLRAGK  310 (460)
T ss_pred             ecCCCceEEecCCceEEEeeeccCc
Confidence            9988889999999999999998875

>KOG0645|consensus

Probab=99.83  E-value=6e-19  Score=131.12  Aligned_cols=144  Identities=15%  Similarity=0.275  Sum_probs=120.5

Q ss_pred             ccCCcEEEEEECCCCceeeee--------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK--------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCI  116 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~--------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (223)
                      +|...|.+++|+|.|+++..+                    .+.+| +..|.+++|+       ++|.+||+|+.|+  .
T Consensus        59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGH-EnEVK~Vaws-------~sG~~LATCSRDK--S  128 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGH-ENEVKCVAWS-------ASGNYLATCSRDK--S  128 (312)
T ss_pred             cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecc-ccceeEEEEc-------CCCCEEEEeeCCC--e
Confidence            577888889999988887654                    45677 8999999999       9999999999999  8


Q ss_pred             EEEecCCCc--eEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEE
Q psy3599         117 LKVLDKEGA--VQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVL  193 (223)
Q Consensus       117 v~i~d~~~~--~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~  193 (223)
                      +-+|....+  ......+ ++|...   ++. .|+|     ...+|+++|.|.+|++|+......-++..++.+|...|+
T Consensus       129 VWiWe~deddEfec~aVL-~~HtqD---VK~V~WHP-----t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW  199 (312)
T KOG0645|consen  129 VWIWEIDEDDEFECIAVL-QEHTQD---VKHVIWHP-----TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVW  199 (312)
T ss_pred             EEEEEecCCCcEEEEeee-cccccc---ccEEEEcC-----CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEE
Confidence            888987633  2233344 589988   554 8999     599999999999999999873222578999999999999


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         194 GVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       194 ~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      +++|++.|..|++++.|++++||-+.
T Consensus       200 ~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  200 SLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             EEEecCCCceEEEecCCcceEeeeec
Confidence            99999999999999999999999854

>KOG0284|consensus

Probab=99.83  E-value=2.5e-20  Score=145.15  Aligned_cols=141  Identities=19%  Similarity=0.333  Sum_probs=120.4

Q ss_pred             CCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEe
Q psy3599          59 TGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVL  120 (223)
Q Consensus        59 ~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~  120 (223)
                      .-.|..+.|.|+|+-+.++                  .++.| +.+|.++.|+       .++.++++++.++  +|++|
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaH-Ds~Vr~m~ws-------~~g~wmiSgD~gG--~iKyW  165 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAH-DSPVRTMKWS-------HNGTWMISGDKGG--MIKYW  165 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhh-cccceeEEEc-------cCCCEEEEcCCCc--eEEec
Confidence            3468888999988766443                  45667 9999999999       9999999999999  99999


Q ss_pred             cCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEec
Q psy3599         121 DKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNY  199 (223)
Q Consensus       121 d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~  199 (223)
                      +.+-.. +. .+ .+|....  |++ +|+|     +...++++|.||.|+|||...   .+....+.+|.-.|.+++|+|
T Consensus       166 qpnmnn-Vk-~~-~ahh~ea--IRdlafSp-----nDskF~t~SdDg~ikiWdf~~---~kee~vL~GHgwdVksvdWHP  232 (464)
T KOG0284|consen  166 QPNMNN-VK-II-QAHHAEA--IRDLAFSP-----NDSKFLTCSDDGTIKIWDFRM---PKEERVLRGHGWDVKSVDWHP  232 (464)
T ss_pred             ccchhh-hH-Hh-hHhhhhh--hheeccCC-----CCceeEEecCCCeEEEEeccC---CchhheeccCCCCcceeccCC
Confidence            987553 32 22 4666554  888 9999     788999999999999999998   777778899999999999999


Q ss_pred             CCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         200 DESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       200 ~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ....+++||.|..|++||.+++.
T Consensus       233 ~kgLiasgskDnlVKlWDprSg~  255 (464)
T KOG0284|consen  233 TKGLIASGSKDNLVKLWDPRSGS  255 (464)
T ss_pred             ccceeEEccCCceeEeecCCCcc
Confidence            99999999999999999999876

>PTZ00421 coronin; Provisional

Probab=99.83  E-value=6.2e-19  Score=147.33  Aligned_cols=124  Identities=18%  Similarity=0.234  Sum_probs=105.3

Q ss_pred             eeeecCCCCeeEEEEeecccccCC-CCeEEEEEeCCCeEEEEEecCCCceE------EeeeeeccccCcceeEEE-eeec
Q psy3599          78 RLVLSQDCPITCLSWRSWISREAR-DPTLLVNIAANAVCILKVLDKEGAVQ------LKRKFNVNHKSSKYQVRS-TFCP  149 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~v~i~d~~~~~~------~~~~~~~~h~~~~~~i~~-~~s~  149 (223)
                      .+.+| .++|.+++|+       | ++.+|++++.|+  .|++||+.++..      ....+ .+|...   +.+ .|+|
T Consensus        70 ~l~GH-~~~V~~v~fs-------P~d~~~LaSgS~Dg--tIkIWdi~~~~~~~~~~~~l~~L-~gH~~~---V~~l~f~P  135 (493)
T PTZ00421         70 ILLGQ-EGPIIDVAFN-------PFDPQKLFTASEDG--TIMGWGIPEEGLTQNISDPIVHL-QGHTKK---VGIVSFHP  135 (493)
T ss_pred             eEeCC-CCCEEEEEEc-------CCCCCEEEEEeCCC--EEEEEecCCCccccccCcceEEe-cCCCCc---EEEEEeCc
Confidence            35666 8999999999       6 888999999999  999999875421      11233 488877   555 8999


Q ss_pred             CcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         150 IMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       150 ~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .    .+++|++|+.|+.|++||+.+   ++.+..+.+|...|.+++|+|++.+|++++.|++|++||+++++
T Consensus       136 ~----~~~iLaSgs~DgtVrIWDl~t---g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~  201 (493)
T PTZ00421        136 S----AMNVLASAGADMVVNVWDVER---GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT  201 (493)
T ss_pred             C----CCCEEEEEeCCCEEEEEECCC---CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc
Confidence            4    357999999999999999999   88888999999999999999999999999999999999999765

>KOG0275|consensus

Probab=99.82  E-value=1.7e-20  Score=142.90  Aligned_cols=121  Identities=22%  Similarity=0.433  Sum_probs=110.9

Q ss_pred             eecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcE
Q psy3599          80 VLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGAC  158 (223)
Q Consensus        80 ~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~  158 (223)
                      ..+ +.+|.|+.|+       .|..+|++|+.|+  .+++|...+|.+++. |...|+..   ++| .|+.     |+..
T Consensus       260 MMm-d~aVlci~FS-------RDsEMlAsGsqDG--kIKvWri~tG~ClRr-FdrAHtkG---vt~l~FSr-----D~Sq  320 (508)
T KOG0275|consen  260 MMM-DDAVLCISFS-------RDSEMLASGSQDG--KIKVWRIETGQCLRR-FDRAHTKG---VTCLSFSR-----DNSQ  320 (508)
T ss_pred             eec-ccceEEEeec-------ccHHHhhccCcCC--cEEEEEEecchHHHH-hhhhhccC---eeEEEEcc-----Ccch
Confidence            344 7899999999       9999999999999  899999999998885 44488888   677 8999     7999


Q ss_pred             EEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       159 l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +++++.|..+++-.+++   +++++.+++|.+.|+...|.++|+.++++|.||+|++|+.++.+
T Consensus       321 iLS~sfD~tvRiHGlKS---GK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktte  381 (508)
T KOG0275|consen  321 ILSASFDQTVRIHGLKS---GKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTE  381 (508)
T ss_pred             hhcccccceEEEecccc---chhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchh
Confidence            99999999999999999   99999999999999999999999999999999999999998765

>KOG0319|consensus

Probab=99.82  E-value=2.9e-19  Score=148.06  Aligned_cols=139  Identities=19%  Similarity=0.296  Sum_probs=126.4

Q ss_pred             ccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK  118 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~  118 (223)
                      .|+..|++++++|+.+++++.                  .+.+| ...|.++.|+       +...+++++|.|.  +++
T Consensus       461 aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH-~RGvw~V~Fs-------~~dq~laT~SgD~--TvK  530 (775)
T KOG0319|consen  461 AHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH-TRGVWCVSFS-------KNDQLLATCSGDK--TVK  530 (775)
T ss_pred             hhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCC-ccceEEEEec-------cccceeEeccCCc--eEE
Confidence            578888888888877777655                  66778 9999999999       8899999999999  999


Q ss_pred             EecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEe
Q psy3599         119 VLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFN  198 (223)
Q Consensus       119 i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~  198 (223)
                      ||.+++..++.+ |. ||+..+  +++.|-.     ++..|+|++.||-+++|++++   .+|+.++.+|++.|++++.+
T Consensus       531 IW~is~fSClkT-~e-GH~~aV--lra~F~~-----~~~qliS~~adGliKlWnikt---~eC~~tlD~H~DrvWaL~~~  598 (775)
T KOG0319|consen  531 IWSISTFSCLKT-FE-GHTSAV--LRASFIR-----NGKQLISAGADGLIKLWNIKT---NECEMTLDAHNDRVWALSVS  598 (775)
T ss_pred             EEEeccceeeee-ec-Ccccee--Eeeeeee-----CCcEEEeccCCCcEEEEeccc---hhhhhhhhhccceeEEEeec
Confidence            999999988875 54 999998  8888877     799999999999999999999   99999999999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEee
Q psy3599         199 YDESLLATSDYQGLIILWS  217 (223)
Q Consensus       199 ~~~~~l~s~s~d~~i~iwd  217 (223)
                      |.+.+++||+.||.|.+|.
T Consensus       599 ~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  599 PLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             CccceeEecCCCeEEEEee
Confidence            9999999999999999995

>KOG0295|consensus

Probab=99.82  E-value=9e-19  Score=134.81  Aligned_cols=151  Identities=16%  Similarity=0.211  Sum_probs=123.6

Q ss_pred             ccCCcEEEEEECCCCceeeee-------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK-------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCIL  117 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~-------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v  117 (223)
                      +|...|..++|+..|+++.+.                   .+.+| ...|.++.|-       |.|.+|++++.|.  .|
T Consensus       148 GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh-~h~vS~V~f~-------P~gd~ilS~srD~--ti  217 (406)
T KOG0295|consen  148 GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGH-EHGVSSVFFL-------PLGDHILSCSRDN--TI  217 (406)
T ss_pred             ccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCc-ccceeeEEEE-------ecCCeeeeccccc--ce
Confidence            788889999999988887654                   34455 8899999999       8899999999999  89


Q ss_pred             EEecCCCceEEeeeeeccccCcce---------------------------------------eEEE-eeecCcc-----
Q psy3599         118 KVLDKEGAVQLKRKFNVNHKSSKY---------------------------------------QVRS-TFCPIMS-----  152 (223)
Q Consensus       118 ~i~d~~~~~~~~~~~~~~h~~~~~---------------------------------------~i~~-~~s~~~~-----  152 (223)
                      +.|+..++.++...  .+|...+.                                       ++.| +|.|...     
T Consensus       218 k~We~~tg~cv~t~--~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~  295 (406)
T KOG0295|consen  218 KAWECDTGYCVKTF--PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSIS  295 (406)
T ss_pred             eEEecccceeEEec--cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchh
Confidence            99999999888753  35543221                                       1444 5555321     


Q ss_pred             cCC-----CcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         153 FRE-----GACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       153 ~~~-----~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ...     +.++.+++.|++|++||+.+   +.|+.++.+|...|..++|+|.|.+|+++..|+++++||+++.+
T Consensus       296 ~at~~~~~~~~l~s~SrDktIk~wdv~t---g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~  367 (406)
T KOG0295|consen  296 EATGSTNGGQVLGSGSRDKTIKIWDVST---GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ  367 (406)
T ss_pred             hccCCCCCccEEEeecccceEEEEeccC---CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence            112     35999999999999999999   99999999999999999999999999999999999999998764

>KOG0296|consensus

Probab=99.82  E-value=1.2e-18  Score=134.24  Aligned_cols=149  Identities=19%  Similarity=0.245  Sum_probs=127.4

Q ss_pred             ccccccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCe
Q psy3599          53 NDQLRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAV  114 (223)
Q Consensus        53 ~~~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~  114 (223)
                      ..|..|...|++++.+|+.++..+.                  .+.+| +..|+++.|+       .+|.+||+|..++ 
T Consensus        58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgH-KDSVt~~~Fs-------hdgtlLATGdmsG-  128 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGH-KDSVTCCSFS-------HDGTLLATGDMSG-  128 (399)
T ss_pred             eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCC-CCceEEEEEc-------cCceEEEecCCCc-
Confidence            3455799999999999977776554                  56677 9999999999       9999999999999 


Q ss_pred             EEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEE
Q psy3599         115 CILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLG  194 (223)
Q Consensus       115 ~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~  194 (223)
                       .+++|...++.......  ..-...  ....|+|     .+..|++|+.||.+.+|.+.+   ....+.+.+|..++++
T Consensus       129 -~v~v~~~stg~~~~~~~--~e~~di--eWl~WHp-----~a~illAG~~DGsvWmw~ip~---~~~~kv~~Gh~~~ct~  195 (399)
T KOG0296|consen  129 -KVLVFKVSTGGEQWKLD--QEVEDI--EWLKWHP-----RAHILLAGSTDGSVWMWQIPS---QALCKVMSGHNSPCTC  195 (399)
T ss_pred             -cEEEEEcccCceEEEee--cccCce--EEEEecc-----cccEEEeecCCCcEEEEECCC---cceeeEecCCCCCccc
Confidence             89999999886655432  233332  4447999     699999999999999999998   6777888999999999


Q ss_pred             EEEecCCCEEEEEeCCCcEEEeeCCCCCC
Q psy3599         195 VSFNYDESLLATSDYQGLIILWSREKHEP  223 (223)
Q Consensus       195 v~~~~~~~~l~s~s~d~~i~iwd~~~~~~  223 (223)
                      -.|.|+|..++++..||+|++||++++.|
T Consensus       196 G~f~pdGKr~~tgy~dgti~~Wn~ktg~p  224 (399)
T KOG0296|consen  196 GEFIPDGKRILTGYDDGTIIVWNPKTGQP  224 (399)
T ss_pred             ccccCCCceEEEEecCceEEEEecCCCce
Confidence            99999999999999999999999999876

>KOG0266|consensus

Probab=99.82  E-value=1.2e-18  Score=145.36  Aligned_cols=143  Identities=17%  Similarity=0.306  Sum_probs=119.4

Q ss_pred             ccCCcEEEEEECCCCceeeee-------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK-------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCIL  117 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~-------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v  117 (223)
                      +|...|..+.|+++++++.+.                   .+.+| ...|++++|+       ++++++++|+.|+  .|
T Consensus       201 ~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH-~~~v~~~~f~-------p~g~~i~Sgs~D~--tv  270 (456)
T KOG0266|consen  201 GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGH-STYVTSVAFS-------PDGNLLVSGSDDG--TV  270 (456)
T ss_pred             ccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCC-CCceEEEEec-------CCCCEEEEecCCC--cE
Confidence            466667777777766544322                   55677 8999999999       8899999999999  99


Q ss_pred             EEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccc--cceeecccccC--E
Q psy3599         118 KVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKN--AVNKLQGHACP--V  192 (223)
Q Consensus       118 ~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~--~~~~~~~h~~~--v  192 (223)
                      ++||.+++.++.. + .+|.+.   +.+ +|++     ++.++++++.|+.|++||+.+   +.  ++..+.++...  +
T Consensus       271 riWd~~~~~~~~~-l-~~hs~~---is~~~f~~-----d~~~l~s~s~d~~i~vwd~~~---~~~~~~~~~~~~~~~~~~  337 (456)
T KOG0266|consen  271 RIWDVRTGECVRK-L-KGHSDG---ISGLAFSP-----DGNLLVSASYDGTIRVWDLET---GSKLCLKLLSGAENSAPV  337 (456)
T ss_pred             EEEeccCCeEEEe-e-eccCCc---eEEEEECC-----CCCEEEEcCCCccEEEEECCC---CceeeeecccCCCCCCce
Confidence            9999999877764 4 599988   555 8999     899999999999999999999   77  56677766655  9


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         193 LGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       193 ~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +++.|+|++.++++++.|+.+++||++.++
T Consensus       338 ~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~  367 (456)
T KOG0266|consen  338 TSVQFSPNGKYLLSASLDRTLKLWDLRSGK  367 (456)
T ss_pred             eEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence            999999999999999999999999998764

>KOG0265|consensus

Probab=99.82  E-value=8.2e-19  Score=132.02  Aligned_cols=147  Identities=20%  Similarity=0.256  Sum_probs=122.9

Q ss_pred             cccccCCcEEEEEECCCCceeeee-------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCe
Q psy3599          54 DQLRSTGVIVSILCDDLGRLSKGK-------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAV  114 (223)
Q Consensus        54 ~~~~~~~~i~~~~~~~~~~~~~~~-------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~  114 (223)
                      ...+|.|.|+.+.|+|+|.++++.                   .+++| .++|..+.|.       .|+..|++++.|+ 
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgH-sgAVM~l~~~-------~d~s~i~S~gtDk-  112 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGH-SGAVMELHGM-------RDGSHILSCGTDK-  112 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccc-cceeEeeeec-------cCCCEEEEecCCc-
Confidence            334899999999999999888665                   45677 8999999999       9999999999999 


Q ss_pred             EEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEE
Q psy3599         115 CILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLG  194 (223)
Q Consensus       115 ~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~  194 (223)
                       .++.||.++|+++.+.  .+|...   +.+. .|  ...+..++.+|+.|+++++||+++   .++++++. .+-.+++
T Consensus       113 -~v~~wD~~tG~~~rk~--k~h~~~---vNs~-~p--~rrg~~lv~SgsdD~t~kl~D~R~---k~~~~t~~-~kyqltA  179 (338)
T KOG0265|consen  113 -TVRGWDAETGKRIRKH--KGHTSF---VNSL-DP--SRRGPQLVCSGSDDGTLKLWDIRK---KEAIKTFE-NKYQLTA  179 (338)
T ss_pred             -eEEEEecccceeeehh--ccccce---eeec-Cc--cccCCeEEEecCCCceEEEEeecc---cchhhccc-cceeEEE
Confidence             9999999999887643  477766   4431 13  122567899999999999999999   88888886 3567999


Q ss_pred             EEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         195 VSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       195 v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +.|+..+..+.+|+-|+.|++||++..+
T Consensus       180 v~f~d~s~qv~sggIdn~ikvWd~r~~d  207 (338)
T KOG0265|consen  180 VGFKDTSDQVISGGIDNDIKVWDLRKND  207 (338)
T ss_pred             EEecccccceeeccccCceeeeccccCc
Confidence            9999999999999999999999998754

>KOG0291|consensus

Probab=99.81  E-value=1.3e-18  Score=144.73  Aligned_cols=141  Identities=20%  Similarity=0.353  Sum_probs=121.1

Q ss_pred             ccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK  118 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~  118 (223)
                      +|...+.++.|+|+|++++++                  .+..| ...|+.+.|+       ..+..+++++.|+  +|+
T Consensus       348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteH-ts~Vt~v~f~-------~~g~~llssSLDG--tVR  417 (893)
T KOG0291|consen  348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEH-TSGVTAVQFT-------ARGNVLLSSSLDG--TVR  417 (893)
T ss_pred             ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccC-CCceEEEEEE-------ecCCEEEEeecCC--eEE
Confidence            678889999999999988665                  45556 8999999999       9999999999999  999


Q ss_pred             EecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCc-EEEEEcccCcccccceeecccccCEEEEE
Q psy3599         119 VLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSC-VYFLDIQSKEHKNAVNKLQGHACPVLGVS  196 (223)
Q Consensus       119 i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~-v~iwd~~~~~~~~~~~~~~~h~~~v~~v~  196 (223)
                      .||+.....-+++ . ......  ..| +..|     .|.++++|+.|.. |++|++++   ++++-.+.+|+++|.+++
T Consensus       418 AwDlkRYrNfRTf-t-~P~p~Q--fscvavD~-----sGelV~AG~~d~F~IfvWS~qT---GqllDiLsGHEgPVs~l~  485 (893)
T KOG0291|consen  418 AWDLKRYRNFRTF-T-SPEPIQ--FSCVAVDP-----SGELVCAGAQDSFEIFVWSVQT---GQLLDILSGHEGPVSGLS  485 (893)
T ss_pred             eeeecccceeeee-c-CCCcee--eeEEEEcC-----CCCEEEeeccceEEEEEEEeec---CeeeehhcCCCCcceeeE
Confidence            9999987666643 2 332222  445 6677     5999999999985 99999999   999999999999999999


Q ss_pred             EecCCCEEEEEeCCCcEEEeeCC
Q psy3599         197 FNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       197 ~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      |+|.++.|+++|.|++||+||+-
T Consensus       486 f~~~~~~LaS~SWDkTVRiW~if  508 (893)
T KOG0291|consen  486 FSPDGSLLASGSWDKTVRIWDIF  508 (893)
T ss_pred             EccccCeEEeccccceEEEEEee
Confidence            99999999999999999999974

>KOG0276|consensus

Probab=99.81  E-value=5.4e-19  Score=144.36  Aligned_cols=147  Identities=16%  Similarity=0.232  Sum_probs=121.5

Q ss_pred             ccccCCcEEEEEECCCCceeeee-------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeE
Q psy3599          55 QLRSTGVIVSILCDDLGRLSKGK-------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVC  115 (223)
Q Consensus        55 ~~~~~~~i~~~~~~~~~~~~~~~-------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~  115 (223)
                      |..|...|.++...|+...+-+.                   .+.+| ..-|.+++|.      |.|...+++++.|+  
T Consensus        93 FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH-~HyVMqv~fn------PkD~ntFaS~sLDr--  163 (794)
T KOG0276|consen   93 FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH-EHYVMQVAFN------PKDPNTFASASLDR--  163 (794)
T ss_pred             eeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc-ceEEEEEEec------CCCccceeeeeccc--
Confidence            33567777777777754443222                   56777 8899999999      58999999999999  


Q ss_pred             EEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEE
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLG  194 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~  194 (223)
                      ++++|.+.+..... ++. ||...   +.| .|-+.+   +..+|+||+.|..+++||.++   ..|+.++.+|...|+.
T Consensus       164 TVKVWslgs~~~nf-Tl~-gHekG---VN~Vdyy~~g---dkpylIsgaDD~tiKvWDyQt---k~CV~TLeGHt~Nvs~  232 (794)
T KOG0276|consen  164 TVKVWSLGSPHPNF-TLE-GHEKG---VNCVDYYTGG---DKPYLISGADDLTIKVWDYQT---KSCVQTLEGHTNNVSF  232 (794)
T ss_pred             cEEEEEcCCCCCce-eee-ccccC---cceEEeccCC---CcceEEecCCCceEEEeecch---HHHHHHhhcccccceE
Confidence            99999998764443 454 99988   555 676632   456999999999999999999   9999999999999999


Q ss_pred             EEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         195 VSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       195 v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      +.|+|.-.+++|||.||++|||...+-
T Consensus       233 v~fhp~lpiiisgsEDGTvriWhs~Ty  259 (794)
T KOG0276|consen  233 VFFHPELPIIISGSEDGTVRIWNSKTY  259 (794)
T ss_pred             EEecCCCcEEEEecCCccEEEecCcce
Confidence            999999999999999999999987653

>KOG0315|consensus

Probab=99.80  E-value=2.1e-18  Score=126.94  Aligned_cols=78  Identities=22%  Similarity=0.266  Sum_probs=68.9

Q ss_pred             cccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCccc-ccceeecccccCEEEEEEecCCCEEEEEeCCCcE
Q psy3599         135 NHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHK-NAVNKLQGHACPVLGVSFNYDESLLATSDYQGLI  213 (223)
Q Consensus       135 ~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i  213 (223)
                      .|....  ++|.+||     ++++|+++|.|.+++||+.+.   . +....+++|...++..+|+.++.+|+||+.|+.+
T Consensus       213 ah~~~i--l~C~lSP-----d~k~lat~ssdktv~iwn~~~---~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~  282 (311)
T KOG0315|consen  213 AHNGHI--LRCLLSP-----DVKYLATCSSDKTVKIWNTDD---FFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTA  282 (311)
T ss_pred             cccceE--EEEEECC-----CCcEEEeecCCceEEEEecCC---ceeeEEEeecCCceEEeeeeccCccEEEecCCCCce
Confidence            344443  6778999     899999999999999999998   5 5667789999999999999999999999999999


Q ss_pred             EEeeCCCCC
Q psy3599         214 ILWSREKHE  222 (223)
Q Consensus       214 ~iwd~~~~~  222 (223)
                      ++||++.++
T Consensus       283 rlW~~~~~k  291 (311)
T KOG0315|consen  283 RLWDLSAGK  291 (311)
T ss_pred             eecccccCc
Confidence            999998875

>KOG0279|consensus

Probab=99.80  E-value=3.3e-18  Score=127.65  Aligned_cols=122  Identities=13%  Similarity=0.251  Sum_probs=105.7

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCc
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGA  157 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~  157 (223)
                      .+.+| ...|..+..+       +||.+.++++-|+  ++++||+.+++... .|. ||...+  +..+|++     +..
T Consensus        58 ~~~GH-sH~v~dv~~s-------~dg~~alS~swD~--~lrlWDl~~g~~t~-~f~-GH~~dV--lsva~s~-----dn~  118 (315)
T KOG0279|consen   58 RLTGH-SHFVSDVVLS-------SDGNFALSASWDG--TLRLWDLATGESTR-RFV-GHTKDV--LSVAFST-----DNR  118 (315)
T ss_pred             eeecc-ceEecceEEc-------cCCceEEeccccc--eEEEEEecCCcEEE-EEE-ecCCce--EEEEecC-----CCc
Confidence            67887 8999999999       9999999999999  99999999985544 454 999994  4449999     899


Q ss_pred             EEEEecCCCcEEEEEcccCcccccceeeccc--ccCEEEEEEecC--CCEEEEEeCCCcEEEeeCCCCC
Q psy3599         158 CVVTGSEDSCVYFLDIQSKEHKNAVNKLQGH--ACPVLGVSFNYD--ESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       158 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h--~~~v~~v~~~~~--~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+++||.|.++++|++..    .+.+++..+  ++.|+|+.|+|+  ..+|+++|.|++|++||+++.+
T Consensus       119 qivSGSrDkTiklwnt~g----~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~  183 (315)
T KOG0279|consen  119 QIVSGSRDKTIKLWNTLG----VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ  183 (315)
T ss_pred             eeecCCCcceeeeeeecc----cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc
Confidence            999999999999999886    566666544  789999999998  7799999999999999998754

>KOG0286|consensus

Probab=99.80  E-value=2.3e-18  Score=129.26  Aligned_cols=142  Identities=18%  Similarity=0.216  Sum_probs=122.9

Q ss_pred             ccccCCcEEEEEECC-CCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeE
Q psy3599          55 QLRSTGVIVSILCDD-LGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVC  115 (223)
Q Consensus        55 ~~~~~~~i~~~~~~~-~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~  115 (223)
                      |.+|.|-|.++++.| +++...+.                  .+.+| +.-|+++.|.       |+|.-|++|++|.  
T Consensus       182 f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh-esDINsv~ff-------P~G~afatGSDD~--  251 (343)
T KOG0286|consen  182 FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH-ESDINSVRFF-------PSGDAFATGSDDA--  251 (343)
T ss_pred             ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccc-ccccceEEEc-------cCCCeeeecCCCc--
Confidence            458999999999999 66654332                  56677 8899999999       9999999999999  


Q ss_pred             EEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEE
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLG  194 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~  194 (223)
                      ..++||+...+.+..+   .|......+.+ +|+.     .|.+|++|..|..+.+||.-.   ++.+..+.+|+.+|+|
T Consensus       252 tcRlyDlRaD~~~a~y---s~~~~~~gitSv~FS~-----SGRlLfagy~d~~c~vWDtlk---~e~vg~L~GHeNRvSc  320 (343)
T KOG0286|consen  252 TCRLYDLRADQELAVY---SHDSIICGITSVAFSK-----SGRLLFAGYDDFTCNVWDTLK---GERVGVLAGHENRVSC  320 (343)
T ss_pred             eeEEEeecCCcEEeee---ccCcccCCceeEEEcc-----cccEEEeeecCCceeEeeccc---cceEEEeeccCCeeEE
Confidence            9999999988777643   44444444666 8998     699999999999999999999   8999999999999999


Q ss_pred             EEEecCCCEEEEEeCCCcEEEee
Q psy3599         195 VSFNYDESLLATSDYQGLIILWS  217 (223)
Q Consensus       195 v~~~~~~~~l~s~s~d~~i~iwd  217 (223)
                      +..+|||..++|||.|..+|||.
T Consensus       321 l~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  321 LGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EEECCCCcEEEecchhHheeecC
Confidence            99999999999999999999994

>KOG0289|consensus

Probab=99.79  E-value=3.9e-18  Score=134.01  Aligned_cols=144  Identities=26%  Similarity=0.313  Sum_probs=117.7

Q ss_pred             ccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK  118 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~  118 (223)
                      ||...|..+.++++...+...                  ....| ..+|+.+...       +.|.||+++++++  +|.
T Consensus       259 Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h-~~~V~~ls~h-------~tgeYllsAs~d~--~w~  328 (506)
T KOG0289|consen  259 GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPH-EEPVTGLSLH-------PTGEYLLSASNDG--TWA  328 (506)
T ss_pred             CcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccc-cccceeeeec-------cCCcEEEEecCCc--eEE
Confidence            566667777777644433222                  23345 8899999999       9999999999999  999


Q ss_pred             EecCCCceEEeeeeecccc-CcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEE
Q psy3599         119 VLDKEGAVQLKRKFNVNHK-SSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVS  196 (223)
Q Consensus       119 i~d~~~~~~~~~~~~~~h~-~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~  196 (223)
                      ..|.+++.++-..   .+. ..+ .+++ .|+|     ||.++.+|..||.|++||+..   +..+..|.+|.++|.+++
T Consensus       329 Fsd~~~g~~lt~v---s~~~s~v-~~ts~~fHp-----DgLifgtgt~d~~vkiwdlks---~~~~a~Fpght~~vk~i~  396 (506)
T KOG0289|consen  329 FSDISSGSQLTVV---SDETSDV-EYTSAAFHP-----DGLIFGTGTPDGVVKIWDLKS---QTNVAKFPGHTGPVKAIS  396 (506)
T ss_pred             EEEccCCcEEEEE---eeccccc-eeEEeeEcC-----CceEEeccCCCceEEEEEcCC---ccccccCCCCCCceeEEE
Confidence            9999998776542   332 221 1666 8999     899999999999999999999   778999999999999999


Q ss_pred             EecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         197 FNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       197 ~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      |+.+|.+|++++.|+.|++||+|+.+
T Consensus       397 FsENGY~Lat~add~~V~lwDLRKl~  422 (506)
T KOG0289|consen  397 FSENGYWLATAADDGSVKLWDLRKLK  422 (506)
T ss_pred             eccCceEEEEEecCCeEEEEEehhhc
Confidence            99999999999999999999999754

>KOG0273|consensus

Probab=99.79  E-value=6.3e-18  Score=134.00  Aligned_cols=153  Identities=18%  Similarity=0.312  Sum_probs=130.8

Q ss_pred             cccccccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEee--cccccCCCCeEEEEEeC
Q psy3599          52 RNDQLRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRS--WISREARDPTLLVNIAA  111 (223)
Q Consensus        52 ~~~~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~--~~~~~~~~~~~l~~~~~  111 (223)
                      ...+.+|.|.|.++.|+|+|.++.+.                  .++.| ...|+.+.|+|  .+..+|.++..+++++.
T Consensus       352 ~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H-skei~t~~wsp~g~v~~n~~~~~~l~sas~  430 (524)
T KOG0273|consen  352 VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH-SKEIYTIKWSPTGPVTSNPNMNLMLASASF  430 (524)
T ss_pred             ceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh-ccceeeEeecCCCCccCCCcCCceEEEeec
Confidence            45667899999999999999998665                  45566 88999999996  45566677889999999


Q ss_pred             CCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccC
Q psy3599         112 NAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACP  191 (223)
Q Consensus       112 ~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~  191 (223)
                      +.  ++++||...+.++.. | .+|+..+  ...+|+|     ++.++++|+.||.|.+|+.++   +++++.+.+ .+.
T Consensus       431 ds--tV~lwdv~~gv~i~~-f-~kH~~pV--ysvafS~-----~g~ylAsGs~dg~V~iws~~~---~~l~~s~~~-~~~  495 (524)
T KOG0273|consen  431 DS--TVKLWDVESGVPIHT-L-MKHQEPV--YSVAFSP-----NGRYLASGSLDGCVHIWSTKT---GKLVKSYQG-TGG  495 (524)
T ss_pred             CC--eEEEEEccCCceeEe-e-ccCCCce--EEEEecC-----CCcEEEecCCCCeeEeccccc---hheeEeecC-CCe
Confidence            99  999999999987775 4 4898885  2237999     899999999999999999999   999999886 456


Q ss_pred             EEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         192 VLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       192 v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      |..++|+.+|+++..+-.|+.+++.|++.
T Consensus       496 Ifel~Wn~~G~kl~~~~sd~~vcvldlr~  524 (524)
T KOG0273|consen  496 IFELCWNAAGDKLGACASDGSVCVLDLRK  524 (524)
T ss_pred             EEEEEEcCCCCEEEEEecCCCceEEEecC
Confidence            99999999999998888899999999873

>KOG0302|consensus

Probab=99.79  E-value=1.3e-18  Score=134.50  Aligned_cols=147  Identities=15%  Similarity=0.291  Sum_probs=116.1

Q ss_pred             ccCCcEEEEEECC--CCceeeee--------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCe
Q psy3599          57 RSTGVIVSILCDD--LGRLSKGK--------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAV  114 (223)
Q Consensus        57 ~~~~~i~~~~~~~--~~~~~~~~--------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~  114 (223)
                      +|.+.=+.+.|+|  +|++...-                    .+..| ...|..++|+      |.....|++||-|+ 
T Consensus       209 ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH-~~SVEDLqWS------ptE~~vfaScS~Dg-  280 (440)
T KOG0302|consen  209 GHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGH-TKSVEDLQWS------PTEDGVFASCSCDG-  280 (440)
T ss_pred             ccCccceeeecccccccccccCccccceEeeeeccCceeecCcccccc-ccchhhhccC------CccCceEEeeecCc-
Confidence            6777778888888  56554111                    34455 8899999999      36778999999999 


Q ss_pred             EEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEE
Q psy3599         115 CILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVL  193 (223)
Q Consensus       115 ~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~  193 (223)
                       .|+|||...+..-...+...|...   +.. .|+.     +..+|++|+.||+++|||++....+.++..++-|+.+|+
T Consensus       281 -sIrIWDiRs~~~~~~~~~kAh~sD---VNVISWnr-----~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIt  351 (440)
T KOG0302|consen  281 -SIRIWDIRSGPKKAAVSTKAHNSD---VNVISWNR-----REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPIT  351 (440)
T ss_pred             -eEEEEEecCCCccceeEeeccCCc---eeeEEccC-----CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCee
Confidence             899999987733333333588887   444 6887     456999999999999999997443678899999999999


Q ss_pred             EEEEecC-CCEEEEEeCCCcEEEeeCCC
Q psy3599         194 GVSFNYD-ESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       194 ~v~~~~~-~~~l~s~s~d~~i~iwd~~~  220 (223)
                      +|.|+|. ...|+.+|.|..|.|||+..
T Consensus       352 sieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  352 SIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             EEEeccccCceEEeccCCCcEEEEEeec
Confidence            9999996 66788888999999999864

>KOG0293|consensus

Probab=99.79  E-value=1.1e-18  Score=136.54  Aligned_cols=121  Identities=27%  Similarity=0.394  Sum_probs=106.4

Q ss_pred             cCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEE
Q psy3599          82 SQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVT  161 (223)
Q Consensus        82 ~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~s  161 (223)
                      ....+|++++.+       .++.++++.-.+.  .+++||++....+.++  .||+...+.|+++|.-.    +..++++
T Consensus       393 se~~~its~~iS-------~d~k~~LvnL~~q--ei~LWDl~e~~lv~kY--~Ghkq~~fiIrSCFgg~----~~~fiaS  457 (519)
T KOG0293|consen  393 SEEQPITSFSIS-------KDGKLALVNLQDQ--EIHLWDLEENKLVRKY--FGHKQGHFIIRSCFGGG----NDKFIAS  457 (519)
T ss_pred             cccCceeEEEEc-------CCCcEEEEEcccC--eeEEeecchhhHHHHh--hcccccceEEEeccCCC----CcceEEe
Confidence            336799999999       9999988877777  7999999977666655  59999888899988764    6689999


Q ss_pred             ecCCCcEEEEEcccCcccccceeecccccCEEEEEEecC-CCEEEEEeCCCcEEEeeCCC
Q psy3599         162 GSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD-ESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       162 gs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~  220 (223)
                      ||+|+.|+||+..+   ++++..+.||...|+||+|+|. ..++|+||.||+||||....
T Consensus       458 GSED~kvyIWhr~s---gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  458 GSEDSKVYIWHRIS---GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             cCCCceEEEEEccC---CceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            99999999999999   9999999999999999999995 77999999999999998753

>KOG0292|consensus

Probab=99.78  E-value=2.2e-18  Score=145.66  Aligned_cols=137  Identities=22%  Similarity=0.310  Sum_probs=117.6

Q ss_pred             cCCcEEEEEECCCCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeecccc
Q psy3599          58 STGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHK  137 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~  137 (223)
                      |.|.|..+.|-. +.++.  .+..| ++||..++|+       |...++++|+||.  .|++|+.++.+++.+.  .||.
T Consensus        29 HsG~IQlWDYRM-~tli~--rFdeH-dGpVRgv~FH-------~~qplFVSGGDDy--kIkVWnYk~rrclftL--~GHl   93 (1202)
T KOG0292|consen   29 HSGVIQLWDYRM-GTLID--RFDEH-DGPVRGVDFH-------PTQPLFVSGGDDY--KIKVWNYKTRRCLFTL--LGHL   93 (1202)
T ss_pred             cCceeeeehhhh-hhHHh--hhhcc-CCccceeeec-------CCCCeEEecCCcc--EEEEEecccceehhhh--cccc
Confidence            455555444432 33333  56677 9999999999       9999999999999  9999999999888755  5999


Q ss_pred             CcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEe
Q psy3599         138 SSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILW  216 (223)
Q Consensus       138 ~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iw  216 (223)
                      +.   ++. .|++     .-.+|+|+|.|.+|+||+.++   ++++..+.+|...|+|.+|+|....++++|-|-+||+|
T Consensus        94 DY---VRt~~FHh-----eyPWIlSASDDQTIrIWNwqs---r~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW  162 (1202)
T KOG0292|consen   94 DY---VRTVFFHH-----EYPWILSASDDQTIRIWNWQS---RKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW  162 (1202)
T ss_pred             ce---eEEeeccC-----CCceEEEccCCCeEEEEeccC---CceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence            88   666 7888     678999999999999999999   99999999999999999999999999999999999999


Q ss_pred             eCCC
Q psy3599         217 SREK  220 (223)
Q Consensus       217 d~~~  220 (223)
                      |+..
T Consensus       163 DisG  166 (1202)
T KOG0292|consen  163 DISG  166 (1202)
T ss_pred             eecc
Confidence            9853

>KOG0318|consensus

Probab=99.77  E-value=7.9e-18  Score=135.08  Aligned_cols=168  Identities=16%  Similarity=0.270  Sum_probs=125.5

Q ss_pred             HHHHhhhhhhhhhccCCCccccccccccCCcEEEEEECCCCceeeee--------------------eeeecCCCCeeEE
Q psy3599          31 LYIRRRNQLLRENSATTSDQLRNDQLRSTGVIVSILCDDLGRLSKGK--------------------RLVLSQDCPITCL   90 (223)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------------------~~~~~~~~~i~~l   90 (223)
                      +|...++-.++.+..   +....+|..|...+....|+|.|..+++.                    +++.- .++|.+|
T Consensus        34 lY~nGksv~ir~i~~---~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~-aG~I~Di  109 (603)
T KOG0318|consen   34 LYTNGKSVIIRNIDN---PASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVL-AGPIKDI  109 (603)
T ss_pred             EEeCCCEEEEEECCC---ccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeec-ccccccc
Confidence            566666655555443   33456677888889999999987766544                    22333 6799999


Q ss_pred             EEeecccccCCCCeEEEEEeCCCeEEE--EEecCCCceEEeee-------------------------------------
Q psy3599          91 SWRSWISREARDPTLLVNIAANAVCIL--KVLDKEGAVQLKRK-------------------------------------  131 (223)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~v--~i~d~~~~~~~~~~-------------------------------------  131 (223)
                      +|+       .++..|+..++++-+..  .+||.  |..+...                                     
T Consensus       110 ~Wd-------~ds~RI~avGEGrerfg~~F~~DS--G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF  180 (603)
T KOG0318|consen  110 SWD-------FDSKRIAAVGEGRERFGHVFLWDS--GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF  180 (603)
T ss_pred             eeC-------CCCcEEEEEecCccceeEEEEecC--CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe
Confidence            999       99999888776654444  44554  3222110                                     


Q ss_pred             -ee---ccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeec---ccccCEEEEEEecCCCE
Q psy3599         132 -FN---VNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQ---GHACPVLGVSFNYDESL  203 (223)
Q Consensus       132 -~~---~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~---~h~~~v~~v~~~~~~~~  203 (223)
                       |.   ..|...   +.| .|+|     ||..+++.+.||.+.+||-.+   ++.+..+.   +|++.|.+++|+||+..
T Consensus       181 KFk~s~r~HskF---V~~VRysP-----DG~~Fat~gsDgki~iyDGkt---ge~vg~l~~~~aHkGsIfalsWsPDs~~  249 (603)
T KOG0318|consen  181 KFKSSFREHSKF---VNCVRYSP-----DGSRFATAGSDGKIYIYDGKT---GEKVGELEDSDAHKGSIFALSWSPDSTQ  249 (603)
T ss_pred             eeeecccccccc---eeeEEECC-----CCCeEEEecCCccEEEEcCCC---ccEEEEecCCCCccccEEEEEECCCCce
Confidence             00   123333   666 7999     899999999999999999999   89888887   89999999999999999


Q ss_pred             EEEEeCCCcEEEeeCCCCC
Q psy3599         204 LATSDYQGLIILWSREKHE  222 (223)
Q Consensus       204 l~s~s~d~~i~iwd~~~~~  222 (223)
                      ++|+|.|++++|||+.+.+
T Consensus       250 ~~T~SaDkt~KIWdVs~~s  268 (603)
T KOG0318|consen  250 FLTVSADKTIKIWDVSTNS  268 (603)
T ss_pred             EEEecCCceEEEEEeeccc
Confidence            9999999999999998753

>KOG0295|consensus

Probab=99.77  E-value=2.8e-17  Score=126.64  Aligned_cols=147  Identities=17%  Similarity=0.321  Sum_probs=120.8

Q ss_pred             ccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeeccccc--------CCCCeEEEEEe
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISRE--------ARDPTLLVNIA  110 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~--------~~~~~~l~~~~  110 (223)
                      +|..-|..+..+.+|.++++.                  .+..| ..+|.+++|.|..+..        ...+.++++++
T Consensus       233 ~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~h-Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S  311 (406)
T KOG0295|consen  233 GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREH-EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS  311 (406)
T ss_pred             CchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcc-ccceEEEEecccccCcchhhccCCCCCccEEEeec
Confidence            444455555556666665443                  45566 8899999997533221        12346899999


Q ss_pred             CCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccc
Q psy3599         111 ANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHA  189 (223)
Q Consensus       111 ~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~  189 (223)
                      .|+  ++++||..++.++.+.  .||.+.   ++. +|+|     .|.+|+++.+|+++++||+++   ++|+..+.+|.
T Consensus       312 rDk--tIk~wdv~tg~cL~tL--~ghdnw---Vr~~af~p-----~Gkyi~ScaDDktlrvwdl~~---~~cmk~~~ah~  376 (406)
T KOG0295|consen  312 RDK--TIKIWDVSTGMCLFTL--VGHDNW---VRGVAFSP-----GGKYILSCADDKTLRVWDLKN---LQCMKTLEAHE  376 (406)
T ss_pred             ccc--eEEEEeccCCeEEEEE--ecccce---eeeeEEcC-----CCeEEEEEecCCcEEEEEecc---ceeeeccCCCc
Confidence            999  9999999999888765  599999   776 9999     799999999999999999999   99999999999


Q ss_pred             cCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         190 CPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       190 ~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      ..|++++|+.+-.+++||+.|-++++|..+
T Consensus       377 hfvt~lDfh~~~p~VvTGsVdqt~KvwEcr  406 (406)
T KOG0295|consen  377 HFVTSLDFHKTAPYVVTGSVDQTVKVWECR  406 (406)
T ss_pred             ceeEEEecCCCCceEEeccccceeeeeecC
Confidence            999999999999999999999999999754

>PTZ00420 coronin; Provisional

Probab=99.77  E-value=3.6e-17  Score=137.91  Aligned_cols=123  Identities=15%  Similarity=0.178  Sum_probs=99.4

Q ss_pred             eeeecCCCCeeEEEEeecccccCCC-CeEEEEEeCCCeEEEEEecCCCceE-------EeeeeeccccCcceeEEE-eee
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARD-PTLLVNIAANAVCILKVLDKEGAVQ-------LKRKFNVNHKSSKYQVRS-TFC  148 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~v~i~d~~~~~~-------~~~~~~~~h~~~~~~i~~-~~s  148 (223)
                      .+..| ..+|.+++|+       |+ +.+|++|+.|+  .+++||+.++..       ....+ .+|...   +.+ .|+
T Consensus        69 ~L~gH-~~~V~~lafs-------P~~~~lLASgS~Dg--tIrIWDi~t~~~~~~~i~~p~~~L-~gH~~~---V~sVaf~  134 (568)
T PTZ00420         69 KLKGH-TSSILDLQFN-------PCFSEILASGSEDL--TIRVWEIPHNDESVKEIKDPQCIL-KGHKKK---ISIIDWN  134 (568)
T ss_pred             EEcCC-CCCEEEEEEc-------CCCCCEEEEEeCCC--eEEEEECCCCCccccccccceEEe-ecCCCc---EEEEEEC
Confidence            45667 8899999999       65 78999999999  999999875321       11123 378777   665 899


Q ss_pred             cCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         149 PIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       149 ~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      |.    ...++++++.|+.|++||+++   ++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||+++++
T Consensus       135 P~----g~~iLaSgS~DgtIrIWDl~t---g~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~  200 (568)
T PTZ00420        135 PM----NYYIMCSSGFDSFVNIWDIEN---EKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE  200 (568)
T ss_pred             CC----CCeEEEEEeCCCeEEEEECCC---CcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc
Confidence            94    234567999999999999998   77666665 56789999999999999999999999999999875

>KOG0319|consensus

Probab=99.77  E-value=9.7e-18  Score=139.12  Aligned_cols=119  Identities=24%  Similarity=0.353  Sum_probs=108.7

Q ss_pred             ecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEE
Q psy3599          81 LSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACV  159 (223)
Q Consensus        81 ~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l  159 (223)
                      .| +..|++++.+       |+..+++|||.|+  +.++|+++.... ...+. ||+..   +.+ .|+|     ....+
T Consensus       461 aH-dKdIN~Vaia-------~ndkLiAT~SqDk--taKiW~le~~~l-~~vLs-GH~RG---vw~V~Fs~-----~dq~l  520 (775)
T KOG0319|consen  461 AH-DKDINCVAIA-------PNDKLIATGSQDK--TAKIWDLEQLRL-LGVLS-GHTRG---VWCVSFSK-----NDQLL  520 (775)
T ss_pred             hh-cccccceEec-------CCCceEEeccccc--ceeeecccCceE-EEEee-CCccc---eEEEEecc-----cccee
Confidence            45 8899999999       9999999999999  999999996644 44564 99998   666 7999     78999


Q ss_pred             EEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         160 VTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       160 ~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +|+|.|++|+||.+.+   ..|++++.||+..|..+.|-.++..|++++.||.+++|++++.+
T Consensus       521 aT~SgD~TvKIW~is~---fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e  580 (775)
T KOG0319|consen  521 ATCSGDKTVKIWSIST---FSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE  580 (775)
T ss_pred             EeccCCceEEEEEecc---ceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence            9999999999999999   99999999999999999999999999999999999999999875

>KOG0316|consensus

Probab=99.77  E-value=1.1e-17  Score=122.41  Aligned_cols=121  Identities=14%  Similarity=0.295  Sum_probs=108.3

Q ss_pred             eeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcE
Q psy3599          79 LVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGAC  158 (223)
Q Consensus        79 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~  158 (223)
                      +..+ .++|..+.|+       .+|++.++|+.+.  ++++|++..+..+.++  .+|..++  +..+.+.     +...
T Consensus        13 l~~~-qgaV~avryN-------~dGnY~ltcGsdr--tvrLWNp~rg~liktY--sghG~EV--lD~~~s~-----Dnsk   73 (307)
T KOG0316|consen   13 LDCA-QGAVRAVRYN-------VDGNYCLTCGSDR--TVRLWNPLRGALIKTY--SGHGHEV--LDAALSS-----DNSK   73 (307)
T ss_pred             eccc-ccceEEEEEc-------cCCCEEEEcCCCc--eEEeecccccceeeee--cCCCcee--eeccccc-----cccc
Confidence            4455 8899999999       9999999999999  9999999999877765  5888775  4445555     7889


Q ss_pred             EEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       159 l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      +++|+.|..+.+||+.+   ++.+..+.+|...|+.+.|+.+...+++||.|.++++||.|+.
T Consensus        74 f~s~GgDk~v~vwDV~T---Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~  133 (307)
T KOG0316|consen   74 FASCGGDKAVQVWDVNT---GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR  133 (307)
T ss_pred             cccCCCCceEEEEEccc---CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccC
Confidence            99999999999999999   9999999999999999999999999999999999999999874

>KOG0310|consensus

Probab=99.77  E-value=2.3e-17  Score=131.16  Aligned_cols=141  Identities=27%  Similarity=0.369  Sum_probs=116.3

Q ss_pred             cCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEE
Q psy3599          58 STGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKV  119 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i  119 (223)
                      -...++++.|-.+|+++...                  .+..| ..++..+.|+      |.++..|++|+||+  .+++
T Consensus        67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah-~apv~~~~f~------~~d~t~l~s~sDd~--v~k~  137 (487)
T KOG0310|consen   67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAH-QAPVHVTKFS------PQDNTMLVSGSDDK--VVKY  137 (487)
T ss_pred             hccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhc-cCceeEEEec------ccCCeEEEecCCCc--eEEE
Confidence            34556667776677776443                  45566 8999999999      47788899999999  8999


Q ss_pred             ecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCccc-ccceeecccccCEEEEEE
Q psy3599         120 LDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHK-NAVNKLQGHACPVLGVSF  197 (223)
Q Consensus       120 ~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~  197 (223)
                      ||+++... ...+ .+|++.   ++| +|+|.    ++..++|||.||.|++||.+.   . ..+.++. |..+|..+.+
T Consensus       138 ~d~s~a~v-~~~l-~~htDY---VR~g~~~~~----~~hivvtGsYDg~vrl~DtR~---~~~~v~eln-hg~pVe~vl~  204 (487)
T KOG0310|consen  138 WDLSTAYV-QAEL-SGHTDY---VRCGDISPA----NDHIVVTGSYDGKVRLWDTRS---LTSRVVELN-HGCPVESVLA  204 (487)
T ss_pred             EEcCCcEE-EEEe-cCCcce---eEeeccccC----CCeEEEecCCCceEEEEEecc---CCceeEEec-CCCceeeEEE
Confidence            99998875 3344 599999   888 89996    678999999999999999998   4 6677777 8899999999


Q ss_pred             ecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         198 NYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       198 ~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      -|.|..+++++ .+.|++||+.+|
T Consensus       205 lpsgs~iasAg-Gn~vkVWDl~~G  227 (487)
T KOG0310|consen  205 LPSGSLIASAG-GNSVKVWDLTTG  227 (487)
T ss_pred             cCCCCEEEEcC-CCeEEEEEecCC
Confidence            99999999998 678999999864

>PTZ00421 coronin; Provisional

Probab=99.76  E-value=9.5e-17  Score=134.30  Aligned_cols=144  Identities=19%  Similarity=0.254  Sum_probs=113.6

Q ss_pred             ccccCCcEEEEEECC-CCceeeee-------------------------eeeecCCCCeeEEEEeecccccCCC-CeEEE
Q psy3599          55 QLRSTGVIVSILCDD-LGRLSKGK-------------------------RLVLSQDCPITCLSWRSWISREARD-PTLLV  107 (223)
Q Consensus        55 ~~~~~~~i~~~~~~~-~~~~~~~~-------------------------~~~~~~~~~i~~l~~~~~~~~~~~~-~~~l~  107 (223)
                      +.+|.+.|..+.|+| ++.++.+.                         .+..| ...|.+++|+       |+ +.+|+
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH-~~~V~~l~f~-------P~~~~iLa  142 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH-TKKVGIVSFH-------PSAMNVLA  142 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC-CCcEEEEEeC-------cCCCCEEE
Confidence            346888888888888 55544332                         12345 7789999999       65 47899


Q ss_pred             EEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeec
Q psy3599         108 NIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQ  186 (223)
Q Consensus       108 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~  186 (223)
                      +++.|+  .+++||+.++..+.. + .+|...   +.+ .|+|     ++.+|++|+.|+.|++||+++   ++.+..+.
T Consensus       143 Sgs~Dg--tVrIWDl~tg~~~~~-l-~~h~~~---V~sla~sp-----dG~lLatgs~Dg~IrIwD~rs---g~~v~tl~  207 (493)
T PTZ00421        143 SAGADM--VVNVWDVERGKAVEV-I-KCHSDQ---ITSLEWNL-----DGSLLCTTSKDKKLNIIDPRD---GTIVSSVE  207 (493)
T ss_pred             EEeCCC--EEEEEECCCCeEEEE-E-cCCCCc---eEEEEEEC-----CCCEEEEecCCCEEEEEECCC---CcEEEEEe
Confidence            999999  899999998866553 3 378777   555 8999     799999999999999999999   88888888


Q ss_pred             ccccC-EEEEEEecCCCEEEEEe----CCCcEEEeeCCCC
Q psy3599         187 GHACP-VLGVSFNYDESLLATSD----YQGLIILWSREKH  221 (223)
Q Consensus       187 ~h~~~-v~~v~~~~~~~~l~s~s----~d~~i~iwd~~~~  221 (223)
                      +|.+. +..+.|.+++..+++++    .|+.|++||+++.
T Consensus       208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~  247 (493)
T PTZ00421        208 AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM  247 (493)
T ss_pred             cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence            88764 45678899877777654    4789999999864

>KOG0772|consensus

Probab=99.76  E-value=5e-18  Score=136.05  Aligned_cols=131  Identities=13%  Similarity=0.267  Sum_probs=98.7

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeee-ccc-cCcceeEEEeeecCcccCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFN-VNH-KSSKYQVRSTFCPIMSFRE  155 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~-~~h-~~~~~~i~~~~s~~~~~~~  155 (223)
                      ..++| ...++|-+|+      |.....|++|+.|+  ++|+||.+........+. ... -..+....|+|+|     +
T Consensus       263 nTKGH-ia~lt~g~wh------P~~k~~FlT~s~Dg--tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-----d  328 (641)
T KOG0772|consen  263 NTKGH-IAELTCGCWH------PDNKEEFLTCSYDG--TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-----D  328 (641)
T ss_pred             ccCCc-eeeeeccccc------cCcccceEEecCCC--cEEEEecCCchhheeEEeeccCCCcccCceeeecCC-----C
Confidence            34566 7789999999      35567788999999  999999875433222222 111 1222335669999     8


Q ss_pred             CcEEEEecCCCcEEEEEcccCcccccceeeccccc--CEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         156 GACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHAC--PVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       156 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +.+|++|+.||+|.+|+.........++.-++|..  .|+||.|+++|++|++-|.|+++++||++..+
T Consensus       329 g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  329 GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence            99999999999999999765222233455578887  89999999999999999999999999998743

>KOG0645|consensus

Probab=99.76  E-value=8.5e-17  Score=119.75  Aligned_cols=119  Identities=20%  Similarity=0.368  Sum_probs=102.5

Q ss_pred             CCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCce-EEeeeeeccccCcceeEEE-eeecCcccCCCcEEE
Q psy3599          83 QDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAV-QLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVV  160 (223)
Q Consensus        83 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~-~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~  160 (223)
                      +...|.+++|+       |.|++|+++|-|.  ++.||.-..+. .....+. ||.++   ++| +|++     +|++|+
T Consensus        60 hkrsVRsvAws-------p~g~~La~aSFD~--t~~Iw~k~~~efecv~~lE-GHEnE---VK~Vaws~-----sG~~LA  121 (312)
T KOG0645|consen   60 HKRSVRSVAWS-------PHGRYLASASFDA--TVVIWKKEDGEFECVATLE-GHENE---VKCVAWSA-----SGNYLA  121 (312)
T ss_pred             chheeeeeeec-------CCCcEEEEeeccc--eEEEeecCCCceeEEeeee-ccccc---eeEEEEcC-----CCCEEE
Confidence            38899999999       9999999999999  88898765432 2233454 99999   888 9999     799999


Q ss_pred             EecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         161 TGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       161 sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      +++.|.+|.||.+......+++..++.|...|..+.|+|...+|+++|.|++|++|+-.
T Consensus       122 TCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~  180 (312)
T KOG0645|consen  122 TCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDE  180 (312)
T ss_pred             EeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeec
Confidence            99999999999998533357888999999999999999999999999999999999755

>KOG0283|consensus

Probab=99.76  E-value=5.8e-18  Score=142.11  Aligned_cols=121  Identities=17%  Similarity=0.286  Sum_probs=99.7

Q ss_pred             eee-ecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCce----------------------------E-
Q psy3599          78 RLV-LSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAV----------------------------Q-  127 (223)
Q Consensus        78 ~~~-~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~----------------------------~-  127 (223)
                      .+. .| .+.|++++|+       +||.|||+++.|+  .|+||.+....                            . 
T Consensus       261 e~~~ah-~gaIw~mKFS-------~DGKyLAsaGeD~--virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~  330 (712)
T KOG0283|consen  261 EISNAH-KGAIWAMKFS-------HDGKYLASAGEDG--VIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEE  330 (712)
T ss_pred             cccccc-CCcEEEEEeC-------CCCceeeecCCCc--eEEEEEEeccchhcccccccchhhhhhhhccccCccccccc
Confidence            445 45 9999999999       9999999999999  77888654300                            0 


Q ss_pred             -E-----------------------------eeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCc
Q psy3599         128 -L-----------------------------KRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKE  177 (223)
Q Consensus       128 -~-----------------------------~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~  177 (223)
                       +                             ...| .||...+  +...|+-      .++|+++|.|.+|++|++..  
T Consensus       331 ~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef-~GHt~DI--LDlSWSK------n~fLLSSSMDKTVRLWh~~~--  399 (712)
T KOG0283|consen  331 KISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEF-KGHTADI--LDLSWSK------NNFLLSSSMDKTVRLWHPGR--  399 (712)
T ss_pred             cccccccccccccCCccccCCCccccccccchhhh-hccchhh--eeccccc------CCeeEeccccccEEeecCCC--
Confidence             0                             0022 4777776  6667885      88999999999999999999  


Q ss_pred             ccccceeecccccCEEEEEEec-CCCEEEEEeCCCcEEEeeCCCC
Q psy3599         178 HKNAVNKLQGHACPVLGVSFNY-DESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       178 ~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                       .+|++.|. |.+.|+||+|+| |.++|++||-|+.||||++...
T Consensus       400 -~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~  442 (712)
T KOG0283|consen  400 -KECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK  442 (712)
T ss_pred             -cceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcC
Confidence             89999997 999999999999 6899999999999999998654

>KOG0283|consensus

Probab=99.75  E-value=1.5e-17  Score=139.66  Aligned_cols=119  Identities=18%  Similarity=0.269  Sum_probs=101.6

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      .+.+| ...|.+|.|+        ...+|++++.|+  ++|+|++....++..   ..|.+.   |+| +|+|.    |.
T Consensus       364 ef~GH-t~DILDlSWS--------Kn~fLLSSSMDK--TVRLWh~~~~~CL~~---F~Hndf---VTcVaFnPv----DD  422 (712)
T KOG0283|consen  364 EFKGH-TADILDLSWS--------KNNFLLSSSMDK--TVRLWHPGRKECLKV---FSHNDF---VTCVAFNPV----DD  422 (712)
T ss_pred             hhhcc-chhheecccc--------cCCeeEeccccc--cEEeecCCCcceeeE---EecCCe---eEEEEeccc----CC
Confidence            44566 7888999997        557888889999  999999998888875   478888   777 99998    99


Q ss_pred             cEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         157 ACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      +++++||.||.|+||++..   .+.+.... ...-|++++|.|+|...+.|+.+|.+++|+.+..
T Consensus       423 ryFiSGSLD~KvRiWsI~d---~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l  483 (712)
T KOG0283|consen  423 RYFISGSLDGKVRLWSISD---KKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL  483 (712)
T ss_pred             CcEeecccccceEEeecCc---CeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCC
Confidence            9999999999999999998   56554444 4478999999999999999999999999998654

>KOG0281|consensus

Probab=99.75  E-value=4.9e-18  Score=130.48  Aligned_cols=116  Identities=21%  Similarity=0.379  Sum_probs=101.0

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      .+.+| ...|..+.|+         ..++++++.|.  ++++|+..+++.+...  .||...   +.| .+       ++
T Consensus       315 VLvGH-rAaVNvVdfd---------~kyIVsASgDR--TikvW~~st~efvRtl--~gHkRG---IAClQY-------r~  370 (499)
T KOG0281|consen  315 VLVGH-RAAVNVVDFD---------DKYIVSASGDR--TIKVWSTSTCEFVRTL--NGHKRG---IACLQY-------RD  370 (499)
T ss_pred             HHhhh-hhheeeeccc---------cceEEEecCCc--eEEEEeccceeeehhh--hccccc---ceehhc-------cC
Confidence            34456 7778888876         56999999999  9999999999988864  599887   666 55       58


Q ss_pred             cEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         157 ACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .++++||.|.+|++||+..   +.++..+++|+.-|.|+.|  +...+++|+.||+|++||+.++.
T Consensus       371 rlvVSGSSDntIRlwdi~~---G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aal  431 (499)
T KOG0281|consen  371 RLVVSGSSDNTIRLWDIEC---GACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAAL  431 (499)
T ss_pred             eEEEecCCCceEEEEeccc---cHHHHHHhchHHhhhheee--cCceeeeccccceEEEEeccccc
Confidence            9999999999999999999   9999999999999999999  66789999999999999997653

>KOG0306|consensus

Probab=99.75  E-value=2.2e-17  Score=137.47  Aligned_cols=140  Identities=22%  Similarity=0.250  Sum_probs=125.3

Q ss_pred             ccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK  118 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~  118 (223)
                      .-...|.+++++|+|+++...                  .+.+| .-||.|++.+       +|+.+++|||.|.  .++
T Consensus       506 el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGH-kLPV~smDIS-------~DSklivTgSADK--nVK  575 (888)
T KOG0306|consen  506 ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGH-KLPVLSMDIS-------PDSKLIVTGSADK--NVK  575 (888)
T ss_pred             eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccc-ccceeEEecc-------CCcCeEEeccCCC--ceE
Confidence            345779999999999998665                  45567 8899999999       9999999999999  899


Q ss_pred             EecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEE
Q psy3599         119 VLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSF  197 (223)
Q Consensus       119 i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~  197 (223)
                      +|-++=|.+-...  .+|.+.   +.+ .|.|     ...++++++.|+.|+-||...   .+.+.++.+|...|+|++.
T Consensus       576 iWGLdFGDCHKS~--fAHdDS---vm~V~F~P-----~~~~FFt~gKD~kvKqWDg~k---Fe~iq~L~~H~~ev~cLav  642 (888)
T KOG0306|consen  576 IWGLDFGDCHKSF--FAHDDS---VMSVQFLP-----KTHLFFTCGKDGKVKQWDGEK---FEEIQKLDGHHSEVWCLAV  642 (888)
T ss_pred             Eeccccchhhhhh--hcccCc---eeEEEEcc-----cceeEEEecCcceEEeechhh---hhhheeeccchheeeeeEE
Confidence            9999988777755  489988   555 8999     789999999999999999999   9999999999999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEeeCC
Q psy3599         198 NYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       198 ~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      .|+|.+++++|.|.+|++|.-.
T Consensus       643 ~~~G~~vvs~shD~sIRlwE~t  664 (888)
T KOG0306|consen  643 SPNGSFVVSSSHDKSIRLWERT  664 (888)
T ss_pred             cCCCCeEEeccCCceeEeeecc
Confidence            9999999999999999999754

>KOG0278|consensus

Probab=99.75  E-value=6.6e-17  Score=119.30  Aligned_cols=145  Identities=26%  Similarity=0.312  Sum_probs=111.6

Q ss_pred             cccccCCcEEEEEECCCCceeeee----eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEe
Q psy3599          54 DQLRSTGVIVSILCDDLGRLSKGK----RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLK  129 (223)
Q Consensus        54 ~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~  129 (223)
                      .+.-.+..|.+-.++.+.++|...    ........+|+++..+       ++|++|.++.. +  .|..||.++-..+.
T Consensus       150 ~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs-------~dG~ilTia~g-s--sV~Fwdaksf~~lK  219 (334)
T KOG0278|consen  150 LWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVS-------QDGRILTIAYG-S--SVKFWDAKSFGLLK  219 (334)
T ss_pred             EEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeec-------cCCCEEEEecC-c--eeEEecccccccee
Confidence            334455566655666677777544    2233346789999999       99998877654 4  58899998776554


Q ss_pred             eeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceee-cccccCEEEEEEecCCCEEEEE
Q psy3599         130 RKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKL-QGHACPVLGVSFNYDESLLATS  207 (223)
Q Consensus       130 ~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~  207 (223)
                      .      ...+..+.+ ..+|     +...+++|++|..++.||..+   ++-+..+ ++|-++|.|+.|+|+|...++|
T Consensus       220 s------~k~P~nV~SASL~P-----~k~~fVaGged~~~~kfDy~T---geEi~~~nkgh~gpVhcVrFSPdGE~yAsG  285 (334)
T KOG0278|consen  220 S------YKMPCNVESASLHP-----KKEFFVAGGEDFKVYKFDYNT---GEEIGSYNKGHFGPVHCVRFSPDGELYASG  285 (334)
T ss_pred             e------ccCccccccccccC-----CCceEEecCcceEEEEEeccC---CceeeecccCCCCceEEEEECCCCceeecc
Confidence            3      222222555 7888     689999999999999999999   8877775 8999999999999999999999


Q ss_pred             eCCCcEEEeeCCCCC
Q psy3599         208 DYQGLIILWSREKHE  222 (223)
Q Consensus       208 s~d~~i~iwd~~~~~  222 (223)
                      |.||+|+||....++
T Consensus       286 SEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  286 SEDGTIRLWQTTPGK  300 (334)
T ss_pred             CCCceEEEEEecCCC
Confidence            999999999876654

>KOG0276|consensus

Probab=99.74  E-value=3.6e-17  Score=133.86  Aligned_cols=140  Identities=17%  Similarity=0.201  Sum_probs=118.4

Q ss_pred             CCcEEEEEECCCCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccC
Q psy3599          59 TGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKS  138 (223)
Q Consensus        59 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~  138 (223)
                      +..|....|+. +.  ....+..| ..-|.+++.+       |...+++++|||-  ++++||.+.+......|. ||..
T Consensus        76 D~~IrVfnynt-~e--kV~~FeAH-~DyIR~iavH-------Pt~P~vLtsSDDm--~iKlW~we~~wa~~qtfe-GH~H  141 (794)
T KOG0276|consen   76 DMQIRVFNYNT-GE--KVKTFEAH-SDYIRSIAVH-------PTLPYVLTSSDDM--TIKLWDWENEWACEQTFE-GHEH  141 (794)
T ss_pred             CceEEEEeccc-ce--eeEEeecc-ccceeeeeec-------CCCCeEEecCCcc--EEEEeeccCceeeeeEEc-Ccce
Confidence            34444444443 22  23367778 9999999999       8889999999999  999999998887777886 9988


Q ss_pred             cceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecC--CCEEEEEeCCCcEEEe
Q psy3599         139 SKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD--ESLLATSDYQGLIILW  216 (223)
Q Consensus       139 ~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~s~d~~i~iw  216 (223)
                      .+  ...+|+|.    |.+.++++|.|++|++|.+..   ..+..++++|...|+||.|-+.  ..+|+||+.|.++++|
T Consensus       142 yV--Mqv~fnPk----D~ntFaS~sLDrTVKVWslgs---~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvW  212 (794)
T KOG0276|consen  142 YV--MQVAFNPK----DPNTFASASLDRTVKVWSLGS---PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVW  212 (794)
T ss_pred             EE--EEEEecCC----CccceeeeeccccEEEEEcCC---CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEe
Confidence            84  55589997    899999999999999999999   8899999999999999999774  5699999999999999


Q ss_pred             eCCCC
Q psy3599         217 SREKH  221 (223)
Q Consensus       217 d~~~~  221 (223)
                      |..+.
T Consensus       213 DyQtk  217 (794)
T KOG0276|consen  213 DYQTK  217 (794)
T ss_pred             ecchH
Confidence            98864

>KOG0264|consensus

Probab=99.74  E-value=4.8e-17  Score=128.30  Aligned_cols=124  Identities=19%  Similarity=0.350  Sum_probs=103.9

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCc-eEEeeeeeccccCcceeEEE-eeecCcccCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGA-VQLKRKFNVNHKSSKYQVRS-TFCPIMSFRE  155 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~-~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~  155 (223)
                      .+..| ...|.+++|+      +.+..+|+++++|+  .+.|||..++ ....... .+|...   +.| .|+|.    +
T Consensus       222 ~~~~h-~~~VeDV~~h------~~h~~lF~sv~dd~--~L~iwD~R~~~~~~~~~~-~ah~~~---vn~~~fnp~----~  284 (422)
T KOG0264|consen  222 IFSGH-EDVVEDVAWH------PLHEDLFGSVGDDG--KLMIWDTRSNTSKPSHSV-KAHSAE---VNCVAFNPF----N  284 (422)
T ss_pred             EeecC-Ccceehhhcc------ccchhhheeecCCC--eEEEEEcCCCCCCCcccc-cccCCc---eeEEEeCCC----C
Confidence            45666 8899999999      46778899999999  8999999852 1222222 488888   666 89997    7


Q ss_pred             CcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecC-CCEEEEEeCCCcEEEeeCCC
Q psy3599         156 GACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD-ESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       156 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~  220 (223)
                      +..|+|||.|++|++||+++-  ..++.++.+|+..|.+|.|+|. ..+||+++.|+.+.+||+..
T Consensus       285 ~~ilAT~S~D~tV~LwDlRnL--~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  285 EFILATGSADKTVALWDLRNL--NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             CceEEeccCCCcEEEeechhc--ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence            899999999999999999972  3578999999999999999997 77899999999999999865

>KOG0282|consensus

Probab=99.74  E-value=1.8e-17  Score=131.76  Aligned_cols=143  Identities=23%  Similarity=0.416  Sum_probs=111.1

Q ss_pred             ccCCcEEEEEECCCCceeeee----eeeecCCCCeeEEEEeecccccCCCC-eEEEEEeCCCeEEEEEecCCCceEEee-
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK----RLVLSQDCPITCLSWRSWISREARDP-TLLVNIAANAVCILKVLDKEGAVQLKR-  130 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~i~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~v~i~d~~~~~~~~~-  130 (223)
                      .....+++.+||..-+++.+.    ...++.+..++|++|.       |++ ..+++|+.++  .|+.||..+++.+.. 
T Consensus       268 ~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~-------pd~~n~fl~G~sd~--ki~~wDiRs~kvvqeY  338 (503)
T KOG0282|consen  268 NCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFH-------PDNQNIFLVGGSDK--KIRQWDIRSGKVVQEY  338 (503)
T ss_pred             ccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecC-------CCCCcEEEEecCCC--cEEEEeccchHHHHHH
Confidence            344455556666555555433    3456667899999999       665 6677777777  677777776643321 


Q ss_pred             --------------------------------------------------------------------------------
Q psy3599         131 --------------------------------------------------------------------------------  130 (223)
Q Consensus       131 --------------------------------------------------------------------------------  130 (223)
                                                                                                      
T Consensus       339 d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~  418 (503)
T KOG0282|consen  339 DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF  418 (503)
T ss_pred             HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence                                                                                            


Q ss_pred             ------eeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecC-CCE
Q psy3599         131 ------KFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD-ESL  203 (223)
Q Consensus       131 ------~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~  203 (223)
                            .| .||....+.+.+.|||     ||.+|++|+.||.+++||.++   -..+.++++|...+..+.|+|. .+.
T Consensus       419 r~nkkK~f-eGh~vaGys~~v~fSp-----DG~~l~SGdsdG~v~~wdwkt---~kl~~~lkah~~~ci~v~wHP~e~Sk  489 (503)
T KOG0282|consen  419 RLNKKKRF-EGHSVAGYSCQVDFSP-----DGRTLCSGDSDGKVNFWDWKT---TKLVSKLKAHDQPCIGVDWHPVEPSK  489 (503)
T ss_pred             ccCHhhhh-cceeccCceeeEEEcC-----CCCeEEeecCCccEEEeechh---hhhhhccccCCcceEEEEecCCCcce
Confidence                  33 3677777778889999     899999999999999999999   8999999999999999999996 678


Q ss_pred             EEEEeCCCcEEEee
Q psy3599         204 LATSDYQGLIILWS  217 (223)
Q Consensus       204 l~s~s~d~~i~iwd  217 (223)
                      +|||+.||.|++||
T Consensus       490 vat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  490 VATCGWDGLIKIWD  503 (503)
T ss_pred             eEecccCceeEecC
Confidence            99999999999997

>KOG0285|consensus

Probab=99.74  E-value=2.5e-17  Score=126.94  Aligned_cols=122  Identities=14%  Similarity=0.181  Sum_probs=109.8

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      .+.+| .+-|.|+++.       |...+|++++.|+  +++|||+.+++... .+ .||...   ++. ++++     ..
T Consensus       146 Vi~gH-lgWVr~vavd-------P~n~wf~tgs~Dr--tikIwDlatg~Lkl-tl-tGhi~~---vr~vavS~-----rH  205 (460)
T KOG0285|consen  146 VISGH-LGWVRSVAVD-------PGNEWFATGSADR--TIKIWDLATGQLKL-TL-TGHIET---VRGVAVSK-----RH  205 (460)
T ss_pred             hhhhc-cceEEEEeeC-------CCceeEEecCCCc--eeEEEEcccCeEEE-ee-cchhhe---eeeeeecc-----cC
Confidence            55677 8999999999       8899999999999  99999999996554 44 489877   666 8888     68


Q ss_pred             cEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         157 ACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+++++++|+.|+.||+..   .+.+..+.+|-+.|.|++.+|.-..|+||+.|.++|+||+|+..
T Consensus       206 pYlFs~gedk~VKCwDLe~---nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~  268 (460)
T KOG0285|consen  206 PYLFSAGEDKQVKCWDLEY---NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA  268 (460)
T ss_pred             ceEEEecCCCeeEEEechh---hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc
Confidence            8999999999999999999   89999999999999999999999999999999999999999753

>KOG0315|consensus

Probab=99.74  E-value=5e-17  Score=119.78  Aligned_cols=117  Identities=24%  Similarity=0.351  Sum_probs=99.6

Q ss_pred             cCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceE-EeeeeeccccCcceeEEE-eeecCcccCCCcEE
Q psy3599          82 SQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQ-LKRKFNVNHKSSKYQVRS-TFCPIMSFREGACV  159 (223)
Q Consensus        82 ~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~-~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l  159 (223)
                      |.+..|..+...       |++.+|++++...   ||+||++++.. ....|. +|...   +.+ .|..     +|.++
T Consensus        38 h~dsqVNrLeiT-------pdk~~LAaa~~qh---vRlyD~~S~np~Pv~t~e-~h~kN---VtaVgF~~-----dgrWM   98 (311)
T KOG0315|consen   38 HPDSQVNRLEIT-------PDKKDLAAAGNQH---VRLYDLNSNNPNPVATFE-GHTKN---VTAVGFQC-----DGRWM   98 (311)
T ss_pred             cCccceeeEEEc-------CCcchhhhccCCe---eEEEEccCCCCCceeEEe-ccCCc---eEEEEEee-----cCeEE
Confidence            448899999999       9999999998766   78888876543 334554 89888   555 7887     79999


Q ss_pred             EEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         160 VTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       160 ~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      ++||+||+++|||++.   ..+...++ |..+|+++..+|+..-|++|..+|.|++||++..
T Consensus        99 yTgseDgt~kIWdlR~---~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~  156 (311)
T KOG0315|consen   99 YTGSEDGTVKIWDLRS---LSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN  156 (311)
T ss_pred             EecCCCceEEEEeccC---cccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence            9999999999999999   77777776 7799999999999888999999999999999864

>KOG0277|consensus

Probab=99.74  E-value=6.2e-17  Score=119.59  Aligned_cols=124  Identities=15%  Similarity=0.315  Sum_probs=104.0

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCc
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGA  157 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~  157 (223)
                      .++.| ...|.++.|+      +-.++.++++|-|+  ++++|+...+..+.+ | .||...+  ....|+|.    .++
T Consensus        99 ~~kEH-~~EV~Svdwn------~~~r~~~ltsSWD~--TiKLW~~~r~~Sv~T-f-~gh~~~I--y~a~~sp~----~~n  161 (311)
T KOG0277|consen   99 KFKEH-KREVYSVDWN------TVRRRIFLTSSWDG--TIKLWDPNRPNSVQT-F-NGHNSCI--YQAAFSPH----IPN  161 (311)
T ss_pred             HHHhh-hhheEEeccc------cccceeEEeeccCC--ceEeecCCCCcceEe-e-cCCccEE--EEEecCCC----CCC
Confidence            55667 8999999999      35677788889888  899999988777764 5 4998885  44479997    699


Q ss_pred             EEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEec-CCCEEEEEeCCCcEEEeeCCCC
Q psy3599         158 CVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNY-DESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       158 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      +++++|.|+.+++||++..  ++.+. +.+|...|.|+.|+. +.++++||+.|+.|+.||+++-
T Consensus       162 lfas~Sgd~~l~lwdvr~~--gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~  223 (311)
T KOG0277|consen  162 LFASASGDGTLRLWDVRSP--GKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL  223 (311)
T ss_pred             eEEEccCCceEEEEEecCC--CceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhc
Confidence            9999999999999999973  44444 899999999999997 5789999999999999999874

>KOG0282|consensus

Probab=99.73  E-value=1.3e-17  Score=132.56  Aligned_cols=122  Identities=19%  Similarity=0.248  Sum_probs=107.9

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      .+.+| ..+|.+++|+       ++|..|++++-|+  .+++||.++|.++..    .|.+.+  ..| .|.|.    +.
T Consensus       253 tf~gH-~k~Vrd~~~s-------~~g~~fLS~sfD~--~lKlwDtETG~~~~~----f~~~~~--~~cvkf~pd----~~  312 (503)
T KOG0282|consen  253 TFKGH-RKPVRDASFN-------NCGTSFLSASFDR--FLKLWDTETGQVLSR----FHLDKV--PTCVKFHPD----NQ  312 (503)
T ss_pred             hhhcc-hhhhhhhhcc-------ccCCeeeeeecce--eeeeeccccceEEEE----EecCCC--ceeeecCCC----CC
Confidence            45666 8999999999       9999999999999  999999999987764    344554  556 79995    45


Q ss_pred             cEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         157 ACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +.+++|+.|+.|+.||+++   ++.+..+..|-+.|.++.|-+++..+++++.|++++||+.+.+-
T Consensus       313 n~fl~G~sd~ki~~wDiRs---~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v  375 (503)
T KOG0282|consen  313 NIFLVGGSDKKIRQWDIRS---GKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV  375 (503)
T ss_pred             cEEEEecCCCcEEEEeccc---hHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc
Confidence            9999999999999999999   99999999999999999999999999999999999999987653

>KOG0300|consensus

Probab=99.73  E-value=5.8e-17  Score=123.37  Aligned_cols=148  Identities=21%  Similarity=0.273  Sum_probs=123.9

Q ss_pred             cccccccCCcEEEEEECCCCceeeee------------------------------------------------------
Q psy3599          52 RNDQLRSTGVIVSILCDDLGRLSKGK------------------------------------------------------   77 (223)
Q Consensus        52 ~~~~~~~~~~i~~~~~~~~~~~~~~~------------------------------------------------------   77 (223)
                      -..|.||.|.|++++|++.+.++.+.                                                      
T Consensus       183 L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR  262 (481)
T KOG0300|consen  183 LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR  262 (481)
T ss_pred             eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee
Confidence            34566899999999999977776333                                                      


Q ss_pred             ----eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCccc
Q psy3599          78 ----RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSF  153 (223)
Q Consensus        78 ----~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~  153 (223)
                          .+.+| ...|.+..|.       ..|+.+++++-|.  +..+||.++++.+.. + .||..+.  ..|+-+|    
T Consensus       263 vPl~~ltgH-~~vV~a~dWL-------~gg~Q~vTaSWDR--TAnlwDVEtge~v~~-L-tGHd~EL--tHcstHp----  324 (481)
T KOG0300|consen  263 VPLMRLTGH-RAVVSACDWL-------AGGQQMVTASWDR--TANLWDVETGEVVNI-L-TGHDSEL--THCSTHP----  324 (481)
T ss_pred             eeeeeeecc-ccceEehhhh-------cCcceeeeeeccc--cceeeeeccCceecc-c-cCcchhc--cccccCC----
Confidence                45566 7788889998       8899999999888  899999999987764 4 5999885  5556677    


Q ss_pred             CCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         154 REGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       154 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                       ...++++.+.|.+.++||++..  -..+..|++|...|+++.|+.+.+ +++||.|.+|++||+++-
T Consensus       325 -tQrLVvTsSrDtTFRLWDFRea--I~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNM  388 (481)
T KOG0300|consen  325 -TQRLVVTSSRDTTFRLWDFREA--IQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNM  388 (481)
T ss_pred             -cceEEEEeccCceeEeccchhh--cceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccc
Confidence             6899999999999999999862  466888999999999999988655 889999999999999864

>KOG0640|consensus

Probab=99.73  E-value=1.6e-16  Score=120.53  Aligned_cols=150  Identities=14%  Similarity=0.188  Sum_probs=120.2

Q ss_pred             cccccCCcEEEEEECCCCceeeee-------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCe
Q psy3599          54 DQLRSTGVIVSILCDDLGRLSKGK-------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAV  114 (223)
Q Consensus        54 ~~~~~~~~i~~~~~~~~~~~~~~~-------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~  114 (223)
                      .+.+|-..|..+.|.|...++.+.                   .-...+..+|.+|.|+       |.|.+|+.|.+-. 
T Consensus       167 TlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfH-------PsGefllvgTdHp-  238 (430)
T KOG0640|consen  167 TLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFH-------PSGEFLLVGTDHP-  238 (430)
T ss_pred             ehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeec-------CCCceEEEecCCC-
Confidence            345788888888888855555333                   1112346799999999       9999999999988 


Q ss_pred             EEEEEecCCCceEEeeeee-ccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeec-cccc-
Q psy3599         115 CILKVLDKEGAVQLKRKFN-VNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQ-GHAC-  190 (223)
Q Consensus       115 ~~v~i~d~~~~~~~~~~~~-~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~-~h~~-  190 (223)
                       ++++||.++-++....-+ .+|+..   +++ .+++     .+.+.++||.||.|++||--+   ..|+.++. +|.+ 
T Consensus       239 -~~rlYdv~T~QcfvsanPd~qht~a---i~~V~Ys~-----t~~lYvTaSkDG~IklwDGVS---~rCv~t~~~AH~gs  306 (430)
T KOG0640|consen  239 -TLRLYDVNTYQCFVSANPDDQHTGA---ITQVRYSS-----TGSLYVTASKDGAIKLWDGVS---NRCVRTIGNAHGGS  306 (430)
T ss_pred             -ceeEEeccceeEeeecCcccccccc---eeEEEecC-----CccEEEEeccCCcEEeecccc---HHHHHHHHhhcCCc
Confidence             899999998766543322 456666   666 7999     699999999999999999888   88998884 5655 


Q ss_pred             CEEEEEEecCCCEEEEEeCCCcEEEeeCCCCCC
Q psy3599         191 PVLGVSFNYDESLLATSDYQGLIILWSREKHEP  223 (223)
Q Consensus       191 ~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~  223 (223)
                      .|.+..|..++.++++.+.|..+++|.+.++.+
T Consensus       307 evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~  339 (430)
T KOG0640|consen  307 EVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM  339 (430)
T ss_pred             eeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence            689999999999999999999999999988753

>KOG0269|consensus

Probab=99.72  E-value=4.1e-17  Score=136.14  Aligned_cols=145  Identities=17%  Similarity=0.255  Sum_probs=114.6

Q ss_pred             cCCcEEEEEECCCCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeecccc
Q psy3599          58 STGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHK  137 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~  137 (223)
                      ..|.|..+..+..++--....+..| ...+.+++|+      +....+|++|+.|+  ++++||+........++  +..
T Consensus       108 ~nG~i~vWdlnk~~rnk~l~~f~EH-~Rs~~~ldfh------~tep~iliSGSQDg--~vK~~DlR~~~S~~t~~--~nS  176 (839)
T KOG0269|consen  108 TNGVISVWDLNKSIRNKLLTVFNEH-ERSANKLDFH------STEPNILISGSQDG--TVKCWDLRSKKSKSTFR--SNS  176 (839)
T ss_pred             CCCcEEEEecCccccchhhhHhhhh-ccceeeeeec------cCCccEEEecCCCc--eEEEEeeeccccccccc--ccc
Confidence            3455665555542221111145566 9999999999      36788999999999  99999998776555442  433


Q ss_pred             CcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEe
Q psy3599         138 SSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILW  216 (223)
Q Consensus       138 ~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iw  216 (223)
                      ..   ++. .|+|.    .++.++++.+.|.+.+||++..  ..+..++.+|.++|.|+.|+|++.+|||||-|+.|+||
T Consensus       177 ES---iRDV~fsp~----~~~~F~s~~dsG~lqlWDlRqp--~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW  247 (839)
T KOG0269|consen  177 ES---IRDVKFSPG----YGNKFASIHDSGYLQLWDLRQP--DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW  247 (839)
T ss_pred             hh---hhceeeccC----CCceEEEecCCceEEEeeccCc--hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence            33   666 79997    7899999999999999999972  57889999999999999999999999999999999999


Q ss_pred             eCCCCC
Q psy3599         217 SREKHE  222 (223)
Q Consensus       217 d~~~~~  222 (223)
                      |...++
T Consensus       248 d~t~~~  253 (839)
T KOG0269|consen  248 DMTDSR  253 (839)
T ss_pred             eccCCC
Confidence            987654

>KOG0643|consensus

Probab=99.72  E-value=2.3e-16  Score=117.40  Aligned_cols=144  Identities=18%  Similarity=0.198  Sum_probs=114.0

Q ss_pred             ccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK  118 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~  118 (223)
                      +|...+..+.|+.+|.++.+.                  .+.+| .+.|++++.+       .+...+++++.|.  .++
T Consensus         8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GH-tGavW~~Did-------~~s~~liTGSAD~--t~k   77 (327)
T KOG0643|consen    8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGH-TGAVWCCDID-------WDSKHLITGSADQ--TAK   77 (327)
T ss_pred             cCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCC-CceEEEEEec-------CCcceeeeccccc--eeE
Confidence            566666666666666665433                  56778 8999999999       9999999999888  899


Q ss_pred             EecCCCceEEeeeee---------------------------------------------------ccccCcceeEEE-e
Q psy3599         119 VLDKEGAVQLKRKFN---------------------------------------------------VNHKSSKYQVRS-T  146 (223)
Q Consensus       119 i~d~~~~~~~~~~~~---------------------------------------------------~~h~~~~~~i~~-~  146 (223)
                      +||.++|+++.....                                                   ..+...   +.. .
T Consensus        78 LWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk---it~a~  154 (327)
T KOG0643|consen   78 LWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK---ITSAL  154 (327)
T ss_pred             EEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccc---eeeee
Confidence            999999987754100                                                   001111   223 5


Q ss_pred             eecCcccCCCcEEEEecCCCcEEEEEcccCccc-ccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         147 FCPIMSFREGACVVTGSEDSCVYFLDIQSKEHK-NAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       147 ~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      |.|     -+++|++|.+||.|.+||.++   + +.+.+.+.|...|+.++++|+..+++|+|.|.+.++||.++.
T Consensus       155 Wg~-----l~~~ii~Ghe~G~is~~da~~---g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl  222 (327)
T KOG0643|consen  155 WGP-----LGETIIAGHEDGSISIYDART---GKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL  222 (327)
T ss_pred             ecc-----cCCEEEEecCCCcEEEEEccc---CceeeechhhhccccccccccCCcceEEecccCccceeeeccce
Confidence            777     589999999999999999998   5 566777889999999999999999999999999999998764

>KOG0265|consensus

Probab=99.72  E-value=9.6e-17  Score=121.00  Aligned_cols=124  Identities=15%  Similarity=0.198  Sum_probs=101.7

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCc
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGA  157 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~  157 (223)
                      .+..| ++.|+.+.|+       |+|.+|++++.|.  .|.+|+.-....-.... .+|++.+  ....|.+     ++.
T Consensus        42 ~l~gh-~geI~~~~F~-------P~gs~~aSgG~Dr--~I~LWnv~gdceN~~~l-kgHsgAV--M~l~~~~-----d~s  103 (338)
T KOG0265|consen   42 LLPGH-KGEIYTIKFH-------PDGSCFASGGSDR--AIVLWNVYGDCENFWVL-KGHSGAV--MELHGMR-----DGS  103 (338)
T ss_pred             hcCCC-cceEEEEEEC-------CCCCeEeecCCcc--eEEEEeccccccceeee-cccccee--Eeeeecc-----CCC
Confidence            34455 9999999999       8999999999888  88888854332222233 5999995  5558998     899


Q ss_pred             EEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCC-EEEEEeCCCcEEEeeCCCCC
Q psy3599         158 CVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDES-LLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       158 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+++++.|.+|+.||.++   +++++++++|..-|+++.-+..|. ++.|++.|+++++||+|+.+
T Consensus       104 ~i~S~gtDk~v~~wD~~t---G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~  166 (338)
T KOG0265|consen  104 HILSCGTDKTVRGWDAET---GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE  166 (338)
T ss_pred             EEEEecCCceEEEEeccc---ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc
Confidence            999999999999999999   999999999999999988544444 66778899999999999654

>KOG0316|consensus

Probab=99.72  E-value=2.7e-16  Score=115.15  Aligned_cols=143  Identities=17%  Similarity=0.183  Sum_probs=109.0

Q ss_pred             ccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK  118 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~  118 (223)
                      .+.|.|.++.|+.+|+...+.                  .+.+| +..|.+++.+       .|...|++|+.|+  .+.
T Consensus        15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh-G~EVlD~~~s-------~Dnskf~s~GgDk--~v~   84 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH-GHEVLDAALS-------SDNSKFASCGGDK--AVQ   84 (307)
T ss_pred             ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCC-Cceeeecccc-------ccccccccCCCCc--eEE
Confidence            467788888888777654322                  45667 8899999999       8999999999888  899


Q ss_pred             EecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEe
Q psy3599         119 VLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFN  198 (223)
Q Consensus       119 i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~  198 (223)
                      +||.++|+.++. | .+|...++.+  .|+.     +...+++|+.|.++++||.++. ..+++..+....+.|.++.. 
T Consensus        85 vwDV~TGkv~Rr-~-rgH~aqVNtV--~fNe-----esSVv~SgsfD~s~r~wDCRS~-s~ePiQildea~D~V~Si~v-  153 (307)
T KOG0316|consen   85 VWDVNTGKVDRR-F-RGHLAQVNTV--RFNE-----ESSVVASGSFDSSVRLWDCRSR-SFEPIQILDEAKDGVSSIDV-  153 (307)
T ss_pred             EEEcccCeeeee-c-ccccceeeEE--EecC-----cceEEEeccccceeEEEEcccC-CCCccchhhhhcCceeEEEe-
Confidence            999999987774 5 4999985333  5887     7899999999999999999872 25677777666666666655 


Q ss_pred             cCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         199 YDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       199 ~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                       .+..+++||.||++|.||+|.|
T Consensus       154 -~~heIvaGS~DGtvRtydiR~G  175 (307)
T KOG0316|consen  154 -AEHEIVAGSVDGTVRTYDIRKG  175 (307)
T ss_pred             -cccEEEeeccCCcEEEEEeecc
Confidence             3455666666777777776655

>KOG0291|consensus

Probab=99.72  E-value=3.5e-16  Score=130.43  Aligned_cols=141  Identities=19%  Similarity=0.265  Sum_probs=116.9

Q ss_pred             CCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEe
Q psy3599          59 TGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVL  120 (223)
Q Consensus        59 ~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~  120 (223)
                      ...|.+..|++.-+++.+.                  .+... ..+|..+.|+       ..|+.|+.++.. +-.+-+|
T Consensus       265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis-~~~I~t~~~N-------~tGDWiA~g~~k-lgQLlVw  335 (893)
T KOG0291|consen  265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSIS-DQKILTVSFN-------STGDWIAFGCSK-LGQLLVW  335 (893)
T ss_pred             ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecc-cceeeEEEec-------ccCCEEEEcCCc-cceEEEE
Confidence            3668888888755555443                  22333 5789999999       899999988754 2267889


Q ss_pred             cCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEec
Q psy3599         121 DKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNY  199 (223)
Q Consensus       121 d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~  199 (223)
                      +..+..-+.+.  ++|...   +.+ +++|     ||.++++|++||.|++||..+   +-|+.++..|+..|+.+.|+.
T Consensus       336 eWqsEsYVlKQ--QgH~~~---i~~l~YSp-----Dgq~iaTG~eDgKVKvWn~~S---gfC~vTFteHts~Vt~v~f~~  402 (893)
T KOG0291|consen  336 EWQSESYVLKQ--QGHSDR---ITSLAYSP-----DGQLIATGAEDGKVKVWNTQS---GFCFVTFTEHTSGVTAVQFTA  402 (893)
T ss_pred             Eeeccceeeec--cccccc---eeeEEECC-----CCcEEEeccCCCcEEEEeccC---ceEEEEeccCCCceEEEEEEe
Confidence            98876655543  689888   666 8999     899999999999999999999   999999999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEeeCCCC
Q psy3599         200 DESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       200 ~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      .++.++++|.||+|+.||+...
T Consensus       403 ~g~~llssSLDGtVRAwDlkRY  424 (893)
T KOG0291|consen  403 RGNVLLSSSLDGTVRAWDLKRY  424 (893)
T ss_pred             cCCEEEEeecCCeEEeeeeccc
Confidence            9999999999999999998754

>KOG0313|consensus

Probab=99.72  E-value=1.8e-16  Score=122.81  Aligned_cols=123  Identities=20%  Similarity=0.317  Sum_probs=102.0

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      .+.+| ..+|.++.|+       + ...+.+++-|.  +++.||+.++..+...+.   ...   +.| .++|     ..
T Consensus       255 tl~GH-t~~Vs~V~w~-------d-~~v~yS~SwDH--TIk~WDletg~~~~~~~~---~ks---l~~i~~~~-----~~  312 (423)
T KOG0313|consen  255 TLEGH-TEPVSSVVWS-------D-ATVIYSVSWDH--TIKVWDLETGGLKSTLTT---NKS---LNCISYSP-----LS  312 (423)
T ss_pred             Eeccc-ccceeeEEEc-------C-CCceEeecccc--eEEEEEeecccceeeeec---Ccc---eeEeeccc-----cc
Confidence            56677 9999999997       4 77888999999  999999999977765422   222   455 7888     68


Q ss_pred             cEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecC-CCEEEEEeCCCcEEEeeCCCCC
Q psy3599         157 ACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD-ESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+|++|+.|..+++||.++....-....+-+|+..|.++.|+|. ..+|++|+.|+++++||+|+.+
T Consensus       313 ~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  313 KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence            99999999999999999983322345688899999999999995 6789999999999999999865

>KOG4283|consensus

Probab=99.71  E-value=3.3e-16  Score=118.14  Aligned_cols=145  Identities=25%  Similarity=0.319  Sum_probs=113.3

Q ss_pred             ccCCcEEEEEECC-CCceeeee---------------------------------eeeecCCCCeeEEEEeecccccCCC
Q psy3599          57 RSTGVIVSILCDD-LGRLSKGK---------------------------------RLVLSQDCPITCLSWRSWISREARD  102 (223)
Q Consensus        57 ~~~~~i~~~~~~~-~~~~~~~~---------------------------------~~~~~~~~~i~~l~~~~~~~~~~~~  102 (223)
                      .|.|.|+++..++ +|++..+.                                 .-..| ...|.++.|-      |.|
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~H-ky~iss~~Wy------P~D  113 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGH-KYAISSAIWY------PID  113 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccc-eeeeeeeEEe------eec
Confidence            5788888888888 66655322                                 11233 6789999999      478


Q ss_pred             CeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCccccc
Q psy3599         103 PTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNA  181 (223)
Q Consensus       103 ~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~  181 (223)
                      ..++.+++-|.  ++++||.++.+.... |  .-.+.   +-. +++|..  ...-++++|..|-.|++.|+.+   +.+
T Consensus       114 tGmFtssSFDh--tlKVWDtnTlQ~a~~-F--~me~~---VYshamSp~a--~sHcLiA~gtr~~~VrLCDi~S---Gs~  180 (397)
T KOG4283|consen  114 TGMFTSSSFDH--TLKVWDTNTLQEAVD-F--KMEGK---VYSHAMSPMA--MSHCLIAAGTRDVQVRLCDIAS---GSF  180 (397)
T ss_pred             Cceeecccccc--eEEEeecccceeeEE-e--ecCce---eehhhcChhh--hcceEEEEecCCCcEEEEeccC---Ccc
Confidence            88999999999  999999998866553 2  23333   444 677742  1245778888888999999999   999


Q ss_pred             ceeecccccCEEEEEEecC-CCEEEEEeCCCcEEEeeCCCC
Q psy3599         182 VNKLQGHACPVLGVSFNYD-ESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       182 ~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      -+.+.+|.+.|.+|.|+|. +-.|+|||.||.|++||+|..
T Consensus       181 sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra  221 (397)
T KOG4283|consen  181 SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA  221 (397)
T ss_pred             eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecc
Confidence            9999999999999999997 557899999999999999864

>KOG0303|consensus

Probab=99.71  E-value=7.5e-17  Score=125.62  Aligned_cols=142  Identities=17%  Similarity=0.233  Sum_probs=114.4

Q ss_pred             CcEEEEEECCCCceeeee-eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEE------eeee
Q psy3599          60 GVIVSILCDDLGRLSKGK-RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQL------KRKF  132 (223)
Q Consensus        60 ~~i~~~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~------~~~~  132 (223)
                      |.+..+-.+..|++-... .+.+| ..+|.+++|+      |.+...||+||+|.  ++.+|....+...      ...+
T Consensus        57 gaf~ViPl~k~Gr~d~~~P~v~GH-t~~vLDi~w~------PfnD~vIASgSeD~--~v~vW~IPe~~l~~~ltepvv~L  127 (472)
T KOG0303|consen   57 GAFLVIPLVKTGRMDASYPLVCGH-TAPVLDIDWC------PFNDCVIASGSEDT--KVMVWQIPENGLTRDLTEPVVEL  127 (472)
T ss_pred             cceeecccccccccCCCCCCccCc-cccccccccC------ccCCceeecCCCCc--eEEEEECCCcccccCcccceEEE
Confidence            344444555566554433 44556 9999999999      46778899999999  9999987644211      1133


Q ss_pred             eccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCC
Q psy3599         133 NVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG  211 (223)
Q Consensus       133 ~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~  211 (223)
                       .||...   +.. .|+|.    ..+.|++++.|..|.+|++.+   ++.+..+. |.+.|.+++|+.+|++|+|++.|+
T Consensus       128 -~gH~rr---Vg~V~wHPt----A~NVLlsag~Dn~v~iWnv~t---geali~l~-hpd~i~S~sfn~dGs~l~TtckDK  195 (472)
T KOG0303|consen  128 -YGHQRR---VGLVQWHPT----APNVLLSAGSDNTVSIWNVGT---GEALITLD-HPDMVYSMSFNRDGSLLCTTCKDK  195 (472)
T ss_pred             -eeccee---EEEEeeccc----chhhHhhccCCceEEEEeccC---CceeeecC-CCCeEEEEEeccCCceeeeecccc
Confidence             488888   555 79997    689999999999999999999   99888888 999999999999999999999999


Q ss_pred             cEEEeeCCCCC
Q psy3599         212 LIILWSREKHE  222 (223)
Q Consensus       212 ~i~iwd~~~~~  222 (223)
                      .|||||.++++
T Consensus       196 kvRv~dpr~~~  206 (472)
T KOG0303|consen  196 KVRVIDPRRGT  206 (472)
T ss_pred             eeEEEcCCCCc
Confidence            99999999886

>KOG0318|consensus

Probab=99.71  E-value=1.2e-15  Score=122.66  Aligned_cols=147  Identities=16%  Similarity=0.260  Sum_probs=122.8

Q ss_pred             ccccCCcEEEEEECCCCceeeee------------------eee---ecCCCCeeEEEEeecccccCCCCeEEEEEeCCC
Q psy3599          55 QLRSTGVIVSILCDDLGRLSKGK------------------RLV---LSQDCPITCLSWRSWISREARDPTLLVNIAANA  113 (223)
Q Consensus        55 ~~~~~~~i~~~~~~~~~~~~~~~------------------~~~---~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~  113 (223)
                      +..|...|.++.|+|+|.+..+.                  .+.   .| .+.|.+++|+       ||+..|++++.|.
T Consensus       186 ~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aH-kGsIfalsWs-------PDs~~~~T~SaDk  257 (603)
T KOG0318|consen  186 FREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAH-KGSIFALSWS-------PDSTQFLTVSADK  257 (603)
T ss_pred             ccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCc-cccEEEEEEC-------CCCceEEEecCCc
Confidence            34688999999999998887554                  222   45 8899999999       9999999999999


Q ss_pred             eEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEE
Q psy3599         114 VCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVL  193 (223)
Q Consensus       114 ~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~  193 (223)
                        .++|||..+...+.+ +..+.+-....+-|.|       ....|++-+.+|.+.+++...   ..++..+.+|...|+
T Consensus       258 --t~KIWdVs~~slv~t-~~~~~~v~dqqvG~lW-------qkd~lItVSl~G~in~ln~~d---~~~~~~i~GHnK~IT  324 (603)
T KOG0318|consen  258 --TIKIWDVSTNSLVST-WPMGSTVEDQQVGCLW-------QKDHLITVSLSGTINYLNPSD---PSVLKVISGHNKSIT  324 (603)
T ss_pred             --eEEEEEeeccceEEE-eecCCchhceEEEEEE-------eCCeEEEEEcCcEEEEecccC---CChhheeccccccee
Confidence              999999998866654 4334442222256666       467899999999999999998   789999999999999


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         194 GVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       194 ~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ++..+|++.+|.+|+.||.|.-||..++.
T Consensus       325 aLtv~~d~~~i~SgsyDG~I~~W~~~~g~  353 (603)
T KOG0318|consen  325 ALTVSPDGKTIYSGSYDGHINSWDSGSGT  353 (603)
T ss_pred             EEEEcCCCCEEEeeccCceEEEEecCCcc
Confidence            99999999999999999999999998764

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.70  E-value=2.1e-15  Score=134.14  Aligned_cols=144  Identities=14%  Similarity=0.237  Sum_probs=115.1

Q ss_pred             ccCCcEEEEEECCCCceeeee-------eee-----------------ecCCCCeeEEEEeecccccCCCCeEEEEEeCC
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK-------RLV-----------------LSQDCPITCLSWRSWISREARDPTLLVNIAAN  112 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~-------~~~-----------------~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~  112 (223)
                      .|.+.|.+++|+++|+++.+.       .+.                 ......|.+++|+      +.++.+|++++.|
T Consensus       481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~------~~~~~~las~~~D  554 (793)
T PLN00181        481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWN------SYIKSQVASSNFE  554 (793)
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEec------cCCCCEEEEEeCC
Confidence            478889999999988876543       111                 1113467788998      2467889999999


Q ss_pred             CeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccC
Q psy3599         113 AVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACP  191 (223)
Q Consensus       113 ~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~  191 (223)
                      +  .|++||..++..+.. + .+|...   +.+ .|+|.    ++.+|++|+.||.|++||+++   +.++..+..+ ..
T Consensus       555 g--~v~lWd~~~~~~~~~-~-~~H~~~---V~~l~~~p~----~~~~L~Sgs~Dg~v~iWd~~~---~~~~~~~~~~-~~  619 (793)
T PLN00181        555 G--VVQVWDVARSQLVTE-M-KEHEKR---VWSIDYSSA----DPTLLASGSDDGSVKLWSINQ---GVSIGTIKTK-AN  619 (793)
T ss_pred             C--eEEEEECCCCeEEEE-e-cCCCCC---EEEEEEcCC----CCCEEEEEcCCCEEEEEECCC---CcEEEEEecC-CC
Confidence            9  999999988866654 3 488887   555 89874    688999999999999999998   7888888754 57


Q ss_pred             EEEEEEec-CCCEEEEEeCCCcEEEeeCCCC
Q psy3599         192 VLGVSFNY-DESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       192 v~~v~~~~-~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      +.++.|++ ++..|++|+.||.|++||++++
T Consensus       620 v~~v~~~~~~g~~latgs~dg~I~iwD~~~~  650 (793)
T PLN00181        620 ICCVQFPSESGRSLAFGSADHKVYYYDLRNP  650 (793)
T ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence            99999964 6999999999999999999864

>PTZ00420 coronin; Provisional

Probab=99.70  E-value=3.2e-15  Score=126.25  Aligned_cols=141  Identities=11%  Similarity=0.175  Sum_probs=106.9

Q ss_pred             cccCCcEEEEEECCC-Cceeeee--------------------------eeeecCCCCeeEEEEeecccccCCCCe-EEE
Q psy3599          56 LRSTGVIVSILCDDL-GRLSKGK--------------------------RLVLSQDCPITCLSWRSWISREARDPT-LLV  107 (223)
Q Consensus        56 ~~~~~~i~~~~~~~~-~~~~~~~--------------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~-~l~  107 (223)
                      .+|.+.|..+.|+|. +.++.+.                          .+..| ...|.+++|+       |++. +|+
T Consensus        71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH-~~~V~sVaf~-------P~g~~iLa  142 (568)
T PTZ00420         71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH-KKKISIIDWN-------PMNYYIMC  142 (568)
T ss_pred             cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC-CCcEEEEEEC-------CCCCeEEE
Confidence            367777888888773 4444332                          12334 6789999999       7765 457


Q ss_pred             EEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeec
Q psy3599         108 NIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQ  186 (223)
Q Consensus       108 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~  186 (223)
                      +++.|+  .+++||+.++..+..   ..|...   +.+ .|+|     ++.+|++++.|+.|++||+++   ++.+..+.
T Consensus       143 SgS~Dg--tIrIWDl~tg~~~~~---i~~~~~---V~Slswsp-----dG~lLat~s~D~~IrIwD~Rs---g~~i~tl~  206 (568)
T PTZ00420        143 SSGFDS--FVNIWDIENEKRAFQ---INMPKK---LSSLKWNI-----KGNLLSGTCVGKHMHIIDPRK---QEIASSFH  206 (568)
T ss_pred             EEeCCC--eEEEEECCCCcEEEE---EecCCc---EEEEEECC-----CCCEEEEEecCCEEEEEECCC---CcEEEEEe
Confidence            888888  899999998865543   234444   555 8999     799999999999999999999   88888999


Q ss_pred             ccccCEEE-----EEEecCCCEEEEEeCCC----cEEEeeCCC
Q psy3599         187 GHACPVLG-----VSFNYDESLLATSDYQG----LIILWSREK  220 (223)
Q Consensus       187 ~h~~~v~~-----v~~~~~~~~l~s~s~d~----~i~iwd~~~  220 (223)
                      +|.+.+.+     ..|++++.+|++++.|+    .|+|||++.
T Consensus       207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence            99876533     23458888999988774    799999985

>KOG0313|consensus

Probab=99.69  E-value=1.1e-15  Score=118.50  Aligned_cols=115  Identities=21%  Similarity=0.389  Sum_probs=99.1

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCc--eEEeeeeeccccCcceeEEE-eeecCcccCCCcEEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGA--VQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVV  160 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~--~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~  160 (223)
                      ..++.+++++       +...+|++|+.+.  .+++||+.++  ..+...| .||.+.   +.. .|+|.    +...|+
T Consensus       300 ~ksl~~i~~~-------~~~~Ll~~gssdr--~irl~DPR~~~gs~v~~s~-~gH~nw---Vssvkwsp~----~~~~~~  362 (423)
T KOG0313|consen  300 NKSLNCISYS-------PLSKLLASGSSDR--HIRLWDPRTGDGSVVSQSL-IGHKNW---VSSVKWSPT----NEFQLV  362 (423)
T ss_pred             CcceeEeecc-------cccceeeecCCCC--ceeecCCCCCCCceeEEee-ecchhh---hhheecCCC----CceEEE
Confidence            5788999999       8999999999999  8999998754  4555566 499998   444 79997    788999


Q ss_pred             EecCCCcEEEEEcccCcccc-cceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         161 TGSEDSCVYFLDIQSKEHKN-AVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       161 sgs~dg~v~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      +|+.|+.+++||+++   .. +++.+.+|.+.|.++.|+. +..+++||.|++|+|+.-.
T Consensus       363 S~S~D~t~klWDvRS---~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  363 SGSYDNTVKLWDVRS---TKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             EEecCCeEEEEEecc---CCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence            999999999999998   55 8999999999999999975 5579999999999998754

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.69  E-value=5.3e-15  Score=114.38  Aligned_cols=143  Identities=24%  Similarity=0.366  Sum_probs=111.3

Q ss_pred             ccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK  118 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~  118 (223)
                      +|.+.|.++.++++++++...                  ....| ...+..+.|+       +++.+|++++.++  .+.
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~-------~~~~~l~~~~~~~--~i~   76 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH-TGPVRDVAAS-------ADGTYLASGSSDK--TIR   76 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC-CcceeEEEEC-------CCCCEEEEEcCCC--eEE
Confidence            455666666666654443222                  23334 6778899999       8888999999888  899


Q ss_pred             EecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEE
Q psy3599         119 VLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSF  197 (223)
Q Consensus       119 i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~  197 (223)
                      +|+..++..+.. + ..|...   +.+ .|++     ++.++++++.|+.+++||+.+   .+.+..+..|...+.++.|
T Consensus        77 i~~~~~~~~~~~-~-~~~~~~---i~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~i~~~~~  143 (289)
T cd00200          77 LWDLETGECVRT-L-TGHTSY---VSSVAFSP-----DGRILSSSSRDKTIKVWDVET---GKCLTTLRGHTDWVNSVAF  143 (289)
T ss_pred             EEEcCcccceEE-E-eccCCc---EEEEEEcC-----CCCEEEEecCCCeEEEEECCC---cEEEEEeccCCCcEEEEEE
Confidence            999987654443 3 366655   555 7888     678889888899999999998   7888888889999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         198 NYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       198 ~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +|++.++++++.|+.+++||+++++
T Consensus       144 ~~~~~~l~~~~~~~~i~i~d~~~~~  168 (289)
T cd00200         144 SPDGTFVASSSQDGTIKLWDLRTGK  168 (289)
T ss_pred             cCcCCEEEEEcCCCcEEEEEccccc
Confidence            9998988888889999999998654

>KOG0277|consensus

Probab=99.69  E-value=1.2e-15  Score=112.82  Aligned_cols=143  Identities=16%  Similarity=0.293  Sum_probs=110.2

Q ss_pred             cCCcEEEEEECCCCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeecccc
Q psy3599          58 STGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHK  137 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~  137 (223)
                      ..|.++.+..+..+.+.....+  .....+.+++|+      +.....+++++.|+  .+++||..........+ +.|.
T Consensus        36 G~G~L~ile~~~~~gi~e~~s~--d~~D~LfdV~Ws------e~~e~~~~~a~GDG--SLrl~d~~~~s~Pi~~~-kEH~  104 (311)
T KOG0277|consen   36 GNGRLFILEVTDPKGIQECQSY--DTEDGLFDVAWS------ENHENQVIAASGDG--SLRLFDLTMPSKPIHKF-KEHK  104 (311)
T ss_pred             cCceEEEEecCCCCCeEEEEee--ecccceeEeeec------CCCcceEEEEecCc--eEEEeccCCCCcchhHH-Hhhh
Confidence            4566676666422233322222  226789999999      34556677777778  89999976544444455 4898


Q ss_pred             CcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecC-CCEEEEEeCCCcEEEe
Q psy3599         138 SSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD-ESLLATSDYQGLIILW  216 (223)
Q Consensus       138 ~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iw  216 (223)
                      .++  ..+.|++.    ++..++++|.|++|++|+...   +..+.++.+|+.-|....|+|. +++++++|.|+++++|
T Consensus       105 ~EV--~Svdwn~~----~r~~~ltsSWD~TiKLW~~~r---~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lw  175 (311)
T KOG0277|consen  105 REV--YSVDWNTV----RRRIFLTSSWDGTIKLWDPNR---PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLW  175 (311)
T ss_pred             hhe--EEeccccc----cceeEEeeccCCceEeecCCC---CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEE
Confidence            886  44478886    788899999999999999998   8899999999999999999996 8899999999999999


Q ss_pred             eCCC
Q psy3599         217 SREK  220 (223)
Q Consensus       217 d~~~  220 (223)
                      |++.
T Consensus       176 dvr~  179 (311)
T KOG0277|consen  176 DVRS  179 (311)
T ss_pred             EecC
Confidence            9986

>KOG0294|consensus

Probab=99.68  E-value=9.1e-16  Score=116.52  Aligned_cols=140  Identities=17%  Similarity=0.237  Sum_probs=113.6

Q ss_pred             CcEEEEEECCCCc---------eeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEee
Q psy3599          60 GVIVSILCDDLGR---------LSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKR  130 (223)
Q Consensus        60 ~~i~~~~~~~~~~---------~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~  130 (223)
                      ..|+.++.+++-+         +.....+..| ..+|++++.+         +.++|+|+.|.  .|+|||.....++..
T Consensus        11 ~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH-~~sitavAVs---------~~~~aSGssDe--tI~IYDm~k~~qlg~   78 (362)
T KOG0294|consen   11 HVILGFKLDPEPKGCTDSVKPTLKPLFAFSAH-AGSITALAVS---------GPYVASGSSDE--TIHIYDMRKRKQLGI   78 (362)
T ss_pred             eEEEEEEeccCccccccccceeeecccccccc-ccceeEEEec---------ceeEeccCCCC--cEEEEeccchhhhcc
Confidence            4567777776321         1122245667 8999999976         89999999988  899999998877775


Q ss_pred             eeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeC
Q psy3599         131 KFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDY  209 (223)
Q Consensus       131 ~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~  209 (223)
                      .  ..|.+.   +++ .|.+..   ...+|++|+.||.|.+|+...   -+++.++++|+..|+.++.+|.+.+-++.+.
T Consensus        79 l--l~Hags---itaL~F~~~~---S~shLlS~sdDG~i~iw~~~~---W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~  147 (362)
T KOG0294|consen   79 L--LSHAGS---ITALKFYPPL---SKSHLLSGSDDGHIIIWRVGS---WELLKSLKAHKGQVTDLSIHPSGKLALSVGG  147 (362)
T ss_pred             e--eccccc---eEEEEecCCc---chhheeeecCCCcEEEEEcCC---eEEeeeecccccccceeEecCCCceEEEEcC
Confidence            5  478777   665 777732   234899999999999999999   9999999999999999999999999999999


Q ss_pred             CCcEEEeeCCCCC
Q psy3599         210 QGLIILWSREKHE  222 (223)
Q Consensus       210 d~~i~iwd~~~~~  222 (223)
                      |+.+++||+-+|+
T Consensus       148 D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen  148 DQVLRTWNLVRGR  160 (362)
T ss_pred             CceeeeehhhcCc
Confidence            9999999986654

>KOG0647|consensus

Probab=99.68  E-value=4.5e-16  Score=117.53  Aligned_cols=120  Identities=16%  Similarity=0.323  Sum_probs=98.2

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCC-ceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEe
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEG-AVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTG  162 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~-~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sg  162 (223)
                      .+.|.+|+|+      |....+++.+|-|+  .||+|+++. +..+.+.. ..|.+.+  +.++|+.     ++..+++|
T Consensus        27 ~DsIS~l~FS------P~~~~~~~A~SWD~--tVR~wevq~~g~~~~ka~-~~~~~Pv--L~v~Wsd-----dgskVf~g   90 (347)
T KOG0647|consen   27 EDSISALAFS------PQADNLLAAGSWDG--TVRIWEVQNSGQLVPKAQ-QSHDGPV--LDVCWSD-----DGSKVFSG   90 (347)
T ss_pred             ccchheeEec------cccCceEEecccCC--ceEEEEEecCCcccchhh-hccCCCe--EEEEEcc-----CCceEEee
Confidence            6789999999      24667777888888  899999875 44444333 3677775  6669999     89999999


Q ss_pred             cCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCC--EEEEEeCCCcEEEeeCCCCCC
Q psy3599         163 SEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDES--LLATSDYQGLIILWSREKHEP  223 (223)
Q Consensus       163 s~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~l~s~s~d~~i~iwd~~~~~~  223 (223)
                      +.|+.+++||+.+   ++ +..+..|..+|.++.|-+...  +|+|||.|++|+.||.|...|
T Consensus        91 ~~Dk~~k~wDL~S---~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p  149 (347)
T KOG0647|consen   91 GCDKQAKLWDLAS---GQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP  149 (347)
T ss_pred             ccCCceEEEEccC---CC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe
Confidence            9999999999999   64 667778999999999987644  899999999999999997654

>KOG0264|consensus

Probab=99.68  E-value=4.6e-16  Score=122.82  Aligned_cols=126  Identities=21%  Similarity=0.283  Sum_probs=101.1

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceE------EeeeeeccccCcceeEEE-eeecC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQ------LKRKFNVNHKSSKYQVRS-TFCPI  150 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~------~~~~~~~~h~~~~~~i~~-~~s~~  150 (223)
                      .+.+| ...-+.++|+      +.....|++++++.  .+++||++....      ....+ .+|...   +.. +|++.
T Consensus       172 ~L~gH-~~eg~glsWn------~~~~g~Lls~~~d~--~i~lwdi~~~~~~~~~~~p~~~~-~~h~~~---VeDV~~h~~  238 (422)
T KOG0264|consen  172 RLKGH-EKEGYGLSWN------RQQEGTLLSGSDDH--TICLWDINAESKEDKVVDPKTIF-SGHEDV---VEDVAWHPL  238 (422)
T ss_pred             EEEee-cccccccccc------cccceeEeeccCCC--cEEEEeccccccCCccccceEEe-ecCCcc---eehhhcccc
Confidence            56677 4456778888      35667788999999  899999874322      22344 488887   554 79997


Q ss_pred             cccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecC-CCEEEEEeCCCcEEEeeCCCC
Q psy3599         151 MSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD-ESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       151 ~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~  221 (223)
                          +..++++.+.|+.+.|||+++ ...++....++|...|+|++|+|- +.+|||||.|++|++||+|+.
T Consensus       239 ----h~~lF~sv~dd~~L~iwD~R~-~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL  305 (422)
T KOG0264|consen  239 ----HEDLFGSVGDDGKLMIWDTRS-NTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL  305 (422)
T ss_pred             ----chhhheeecCCCeEEEEEcCC-CCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc
Confidence                789999999999999999994 116777888999999999999995 778999999999999999974

>KOG0310|consensus

Probab=99.68  E-value=4.2e-16  Score=124.10  Aligned_cols=117  Identities=24%  Similarity=0.423  Sum_probs=101.8

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEe
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTG  162 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sg  162 (223)
                      ...+++++|.       .||.+|+.|...+  .++++|.++...+. .+ .+|+..   ++. .|+|.    ++..+++|
T Consensus        68 k~~v~s~~fR-------~DG~LlaaGD~sG--~V~vfD~k~r~iLR-~~-~ah~ap---v~~~~f~~~----d~t~l~s~  129 (487)
T KOG0310|consen   68 KDVVYSVDFR-------SDGRLLAAGDESG--HVKVFDMKSRVILR-QL-YAHQAP---VHVTKFSPQ----DNTMLVSG  129 (487)
T ss_pred             ccceeEEEee-------cCCeEEEccCCcC--cEEEeccccHHHHH-HH-hhccCc---eeEEEeccc----CCeEEEec
Confidence            5789999999       9999999999999  89999977654444 34 488887   665 79997    78899999


Q ss_pred             cCCCcEEEEEcccCcccccceeecccccCEEEEEEecC-CCEEEEEeCCCcEEEeeCCCC
Q psy3599         163 SEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD-ESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       163 s~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      +.|+.+++||+.+   ......+.+|++.|.|.+|+|- +.+++|||.||+|++||++..
T Consensus       130 sDd~v~k~~d~s~---a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~  186 (487)
T KOG0310|consen  130 SDDKVVKYWDLST---AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL  186 (487)
T ss_pred             CCCceEEEEEcCC---cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence            9999999999999   7767789999999999999995 779999999999999999875

>KOG0281|consensus

Probab=99.67  E-value=4e-16  Score=120.05  Aligned_cols=140  Identities=19%  Similarity=0.297  Sum_probs=105.7

Q ss_pred             cCCcEEEEEECCC----------Cceeeee------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEec
Q psy3599          58 STGVIVSILCDDL----------GRLSKGK------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLD  121 (223)
Q Consensus        58 ~~~~i~~~~~~~~----------~~~~~~~------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d  121 (223)
                      ....|+++.||-+          -+++...      .+.+| .+.|.|+.|.         .+++++|+.|.  ++++||
T Consensus       196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GH-tGSVLCLqyd---------~rviisGSSDs--TvrvWD  263 (499)
T KOG0281|consen  196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGH-TGSVLCLQYD---------ERVIVSGSSDS--TVRVWD  263 (499)
T ss_pred             cCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcC-CCcEEeeecc---------ceEEEecCCCc--eEEEEe
Confidence            3456888888741          1222211      56677 9999999986         56999999999  999999


Q ss_pred             CCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCC
Q psy3599         122 KEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDE  201 (223)
Q Consensus       122 ~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~  201 (223)
                      .++++.+...  .+|...+  +...|+       +.+++++|.|.++.+||+.....-.+...+.+|...|+.+.|+  .
T Consensus       264 v~tge~l~tl--ihHceaV--Lhlrf~-------ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~  330 (499)
T KOG0281|consen  264 VNTGEPLNTL--IHHCEAV--LHLRFS-------NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--D  330 (499)
T ss_pred             ccCCchhhHH--hhhccee--EEEEEe-------CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--c
Confidence            9999988866  5888886  665674       6789999999999999998722223455677888888888773  4


Q ss_pred             CEEEEEeCCCcEEEeeCCCCC
Q psy3599         202 SLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       202 ~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+++++|.|.+|++|+..+++
T Consensus       331 kyIVsASgDRTikvW~~st~e  351 (499)
T KOG0281|consen  331 KYIVSASGDRTIKVWSTSTCE  351 (499)
T ss_pred             ceEEEecCCceEEEEecccee
Confidence            578888888888888877664

>KOG0973|consensus

Probab=99.67  E-value=2.1e-15  Score=129.95  Aligned_cols=119  Identities=18%  Similarity=0.333  Sum_probs=103.3

Q ss_pred             eecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCC----ce-------------EEeeeeeccccCccee
Q psy3599          80 VLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEG----AV-------------QLKRKFNVNHKSSKYQ  142 (223)
Q Consensus        80 ~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~----~~-------------~~~~~~~~~h~~~~~~  142 (223)
                      .-| ...|+|+.|+       +||.+||+|++|.  .+.+|....    ..             .....+ .+|...+  
T Consensus        66 ~~h-~~sv~CVR~S-------~dG~~lAsGSDD~--~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l-~~H~~DV--  132 (942)
T KOG0973|consen   66 DDH-DGSVNCVRFS-------PDGSYLASGSDDR--LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL-RGHDSDV--  132 (942)
T ss_pred             ccc-cCceeEEEEC-------CCCCeEeeccCcc--eEEEeeecccCCcccccccccccccceeeEEEEE-ecCCCcc--
Confidence            345 8899999999       9999999999999  888898762    00             122234 3899886  


Q ss_pred             EEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         143 VRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       143 i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      ...+|+|     ++.++++++.|++|.+|+.++   .+++..+++|.+.|-.+.|.|-|.+|||-+.|++|++|++.
T Consensus       133 ~Dv~Wsp-----~~~~lvS~s~DnsViiwn~~t---F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~  201 (942)
T KOG0973|consen  133 LDVNWSP-----DDSLLVSVSLDNSVIIWNAKT---FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS  201 (942)
T ss_pred             ceeccCC-----CccEEEEecccceEEEEcccc---ceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcc
Confidence            5558999     899999999999999999999   99999999999999999999999999999999999999954

>KOG0640|consensus

Probab=99.66  E-value=1.5e-15  Score=115.39  Aligned_cols=141  Identities=20%  Similarity=0.289  Sum_probs=113.5

Q ss_pred             ccCCcEEEEEECCCCceeeee------------------------------------eeeecCCCCeeEEEEeecccccC
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK------------------------------------RLVLSQDCPITCLSWRSWISREA  100 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~i~~l~~~~~~~~~~  100 (223)
                      .|.+.+.+..|+++|.++++.                                    .+..| ..+|+++.|+       
T Consensus       110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH-~devn~l~FH-------  181 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDH-VDEVNDLDFH-------  181 (430)
T ss_pred             ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhc-cCcccceeec-------
Confidence            688888999999999988654                                    23334 7899999999       


Q ss_pred             CCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCccc
Q psy3599         101 RDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHK  179 (223)
Q Consensus       101 ~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~  179 (223)
                      |....|++++.|.  +++++|..... .+..++  --.....+++ .|+|     .|++++.|..-..+++||+.+   -
T Consensus       182 Pre~ILiS~srD~--tvKlFDfsK~s-aKrA~K--~~qd~~~vrsiSfHP-----sGefllvgTdHp~~rlYdv~T---~  248 (430)
T KOG0640|consen  182 PRETILISGSRDN--TVKLFDFSKTS-AKRAFK--VFQDTEPVRSISFHP-----SGEFLLVGTDHPTLRLYDVNT---Y  248 (430)
T ss_pred             chhheEEeccCCC--eEEEEecccHH-HHHHHH--HhhccceeeeEeecC-----CCceEEEecCCCceeEEeccc---e
Confidence            8889999999999  99999987442 222221  1112223777 8999     699999999999999999999   7


Q ss_pred             ccceee---cccccCEEEEEEecCCCEEEEEeCCCcEEEeeC
Q psy3599         180 NAVNKL---QGHACPVLGVSFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       180 ~~~~~~---~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      +|...-   ..|++.|++|.+++.+++.+|||.||.|+|||=
T Consensus       249 QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDG  290 (430)
T KOG0640|consen  249 QCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDG  290 (430)
T ss_pred             eEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeecc
Confidence            765543   468999999999999999999999999999994

>KOG0973|consensus

Probab=99.65  E-value=9.2e-15  Score=126.07  Aligned_cols=151  Identities=19%  Similarity=0.276  Sum_probs=118.8

Q ss_pred             ccccccCCcEEEEEECCCCceeeee------------------------------------eeeecCCCCeeEEEEeecc
Q psy3599          53 NDQLRSTGVIVSILCDDLGRLSKGK------------------------------------RLVLSQDCPITCLSWRSWI   96 (223)
Q Consensus        53 ~~~~~~~~~i~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~i~~l~~~~~~   96 (223)
                      .+...|.+.|.++.|+++|+.++.+                                    .+.+| ...|.+++|+   
T Consensus        63 ~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H-~~DV~Dv~Ws---  138 (942)
T KOG0973|consen   63 CTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH-DSDVLDVNWS---  138 (942)
T ss_pred             eeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecC-CCccceeccC---
Confidence            3344789999999999999887544                                    45566 8899999999   


Q ss_pred             cccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEccc
Q psy3599          97 SREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQS  175 (223)
Q Consensus        97 ~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~  175 (223)
                          |++.+|++++.|.  .|.+|+..+...+. .+ .+|...   +.. .|.|     -|.++++-+.|++|++|++..
T Consensus       139 ----p~~~~lvS~s~Dn--sViiwn~~tF~~~~-vl-~~H~s~---VKGvs~DP-----~Gky~ASqsdDrtikvwrt~d  202 (942)
T KOG0973|consen  139 ----PDDSLLVSVSLDN--SVIIWNAKTFELLK-VL-RGHQSL---VKGVSWDP-----IGKYFASQSDDRTLKVWRTSD  202 (942)
T ss_pred             ----CCccEEEEecccc--eEEEEccccceeee-ee-eccccc---ccceEECC-----ccCeeeeecCCceEEEEEccc
Confidence                9999999999888  89999999985444 55 499998   555 8999     599999999999999999533


Q ss_pred             Cc-------------------------cc------------------------ccceeecccccCEEEEEEecC------
Q psy3599         176 KE-------------------------HK------------------------NAVNKLQGHACPVLGVSFNYD------  200 (223)
Q Consensus       176 ~~-------------------------~~------------------------~~~~~~~~h~~~v~~v~~~~~------  200 (223)
                      -+                         .+                        +.-..+-+|..++.++.|+|.      
T Consensus       203 w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~  282 (942)
T KOG0973|consen  203 WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNN  282 (942)
T ss_pred             ceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhcccc
Confidence            00                         00                        011123489999999999982      


Q ss_pred             C-----------CEEEEEeCCCcEEEeeCCCCCC
Q psy3599         201 E-----------SLLATSDYQGLIILWSREKHEP  223 (223)
Q Consensus       201 ~-----------~~l~s~s~d~~i~iwd~~~~~~  223 (223)
                      .           .++|+||.|++|.||.....+|
T Consensus       283 ~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP  316 (942)
T KOG0973|consen  283 KNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP  316 (942)
T ss_pred             ccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence            1           1789999999999999877665

>KOG0302|consensus

Probab=99.65  E-value=1.9e-15  Score=117.21  Aligned_cols=127  Identities=22%  Similarity=0.288  Sum_probs=93.6

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEee--eeeccccCcceeEEE-eeecCcccC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKR--KFNVNHKSSKYQVRS-TFCPIMSFR  154 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~--~~~~~h~~~~~~i~~-~~s~~~~~~  154 (223)
                      .+..| ...=+.|+|||      .....|++|.  ..+.+++|...++.-...  .| .+|+..   +.. .|||.    
T Consensus       206 t~~gh-k~EGy~LdWSp------~~~g~LlsGD--c~~~I~lw~~~~g~W~vd~~Pf-~gH~~S---VEDLqWSpt----  268 (440)
T KOG0302|consen  206 TFNGH-KGEGYGLDWSP------IKTGRLLSGD--CVKGIHLWEPSTGSWKVDQRPF-TGHTKS---VEDLQWSPT----  268 (440)
T ss_pred             Eeccc-Cccceeeeccc------ccccccccCc--cccceEeeeeccCceeecCccc-cccccc---hhhhccCCc----
Confidence            34445 56667899993      2223344443  333688888776642221  23 478877   444 89997    


Q ss_pred             CCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         155 EGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       155 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ...++++||.||+|+|||++..+...++. .++|.+.|+.|+|+.+..+||+|+.||+++|||+|..+
T Consensus       269 E~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~  335 (440)
T KOG0302|consen  269 EDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK  335 (440)
T ss_pred             cCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc
Confidence            78899999999999999999833223444 48999999999999998899999999999999999754

>KOG1445|consensus

Probab=99.64  E-value=8.7e-16  Score=126.28  Aligned_cols=147  Identities=21%  Similarity=0.309  Sum_probs=121.9

Q ss_pred             ccCCcEEEEEECCCCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceE------Eee
Q psy3599          57 RSTGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQ------LKR  130 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~------~~~  130 (223)
                      +..|.|-.+..+.-|++-....-...++..|+++.|.      |.|...|+.+++++  .|++|.+..+..      ...
T Consensus       600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~Wd------PFD~~rLAVa~ddg--~i~lWr~~a~gl~e~~~tPe~  671 (1012)
T KOG1445|consen  600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWD------PFDDERLAVATDDG--QINLWRLTANGLPENEMTPEK  671 (1012)
T ss_pred             CCCceEEEEEcCCCCCCCcccccccccCceeeecccC------CCChHHeeecccCc--eEEEEEeccCCCCcccCCcce
Confidence            6678888888888888876654444447899999999      48889999999999  889997654321      122


Q ss_pred             eeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeC
Q psy3599         131 KFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDY  209 (223)
Q Consensus       131 ~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~  209 (223)
                      .+ .+|...   |.. .|+|.    ..++|++++.|-+|++||+.+   +.....+.+|.+.|..++|+|+|..+||.+.
T Consensus       672 ~l-t~h~eK---I~slRfHPL----AadvLa~asyd~Ti~lWDl~~---~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcK  740 (1012)
T KOG1445|consen  672 IL-TIHGEK---ITSLRFHPL----AADVLAVASYDSTIELWDLAN---AKLYSRLVGHTDQIFGIAWSPDGRRIATVCK  740 (1012)
T ss_pred             ee-ecccce---EEEEEecch----hhhHhhhhhccceeeeeehhh---hhhhheeccCcCceeEEEECCCCcceeeeec
Confidence            33 378777   555 79998    689999999999999999999   8889999999999999999999999999999


Q ss_pred             CCcEEEeeCCCCC
Q psy3599         210 QGLIILWSREKHE  222 (223)
Q Consensus       210 d~~i~iwd~~~~~  222 (223)
                      ||+|++|..++.+
T Consensus       741 Dg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  741 DGTLRVYEPRSRE  753 (1012)
T ss_pred             CceEEEeCCCCCC
Confidence            9999999998764

>KOG0275|consensus

Probab=99.63  E-value=4.9e-16  Score=118.71  Aligned_cols=124  Identities=15%  Similarity=0.268  Sum_probs=104.4

Q ss_pred             eeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeec------cccCcceeEEE-eeecCc
Q psy3599          79 LVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNV------NHKSSKYQVRS-TFCPIM  151 (223)
Q Consensus        79 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~------~h~~~~~~i~~-~~s~~~  151 (223)
                      +++.....+.|..|+       |||++|++++.|+  .+.+|+..+|+.-.....+      -+...   +.| .|+.  
T Consensus       208 IKFg~KSh~EcA~FS-------PDgqyLvsgSvDG--FiEVWny~~GKlrKDLkYQAqd~fMMmd~a---Vlci~FSR--  273 (508)
T KOG0275|consen  208 IKFGQKSHVECARFS-------PDGQYLVSGSVDG--FIEVWNYTTGKLRKDLKYQAQDNFMMMDDA---VLCISFSR--  273 (508)
T ss_pred             eecccccchhheeeC-------CCCceEeeccccc--eeeeehhccchhhhhhhhhhhcceeecccc---eEEEeecc--
Confidence            344446778899999       9999999999999  8999999888533321111      23334   556 8998  


Q ss_pred             ccCCCcEEEEecCCCcEEEEEcccCcccccceeec-ccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         152 SFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQ-GHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       152 ~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                         |..++++|+.||.|++|.+++   +.|+..+. +|...|+|+.|+.|+..++++|.|.++++--+++|+
T Consensus       274 ---DsEMlAsGsqDGkIKvWri~t---G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK  339 (508)
T KOG0275|consen  274 ---DSEMLASGSQDGKIKVWRIET---GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK  339 (508)
T ss_pred             ---cHHHhhccCcCCcEEEEEEec---chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch
Confidence               899999999999999999999   99999997 899999999999999999999999999999888775

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.63  E-value=7.1e-14  Score=108.05  Aligned_cols=120  Identities=26%  Similarity=0.410  Sum_probs=100.2

Q ss_pred             eecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcE
Q psy3599          80 VLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGAC  158 (223)
Q Consensus        80 ~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~  158 (223)
                      ..+ ...|.++.|+       +++.++++++.++  .+.+||..++..... + ..|...   +.+ .|+|     ++.+
T Consensus        90 ~~~-~~~i~~~~~~-------~~~~~~~~~~~~~--~i~~~~~~~~~~~~~-~-~~~~~~---i~~~~~~~-----~~~~  149 (289)
T cd00200          90 TGH-TSYVSSVAFS-------PDGRILSSSSRDK--TIKVWDVETGKCLTT-L-RGHTDW---VNSVAFSP-----DGTF  149 (289)
T ss_pred             ecc-CCcEEEEEEc-------CCCCEEEEecCCC--eEEEEECCCcEEEEE-e-ccCCCc---EEEEEEcC-----cCCE
Confidence            344 6689999999       7788888888677  789999987655543 3 367666   555 8998     6888


Q ss_pred             EEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       159 l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +++++.|+.+++||++.   ++++..+..|...+.++.|+|++..+++++.|+.+++||++.++
T Consensus       150 l~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~  210 (289)
T cd00200         150 VASSSQDGTIKLWDLRT---GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK  210 (289)
T ss_pred             EEEEcCCCcEEEEEccc---cccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence            99888899999999998   78888888899899999999999999999999999999998654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.63  E-value=4.3e-14  Score=125.83  Aligned_cols=148  Identities=14%  Similarity=0.161  Sum_probs=112.4

Q ss_pred             cccCCcEEEEEECC-CCceeeee-------ee---------eecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEE
Q psy3599          56 LRSTGVIVSILCDD-LGRLSKGK-------RL---------VLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK  118 (223)
Q Consensus        56 ~~~~~~i~~~~~~~-~~~~~~~~-------~~---------~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~  118 (223)
                      .+|.+.|.++.|++ ++.++.+.       .+         .......|.++.|.      ++++.+|++|+.++  .++
T Consensus       572 ~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~------~~~g~~latgs~dg--~I~  643 (793)
T PLN00181        572 KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFP------SESGRSLAFGSADH--KVY  643 (793)
T ss_pred             cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEe------CCCCCEEEEEeCCC--eEE
Confidence            36788899999986 66655433       11         11113578889986      26799999999999  899


Q ss_pred             EecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCc---ccccceeecccccCEEE
Q psy3599         119 VLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKE---HKNAVNKLQGHACPVLG  194 (223)
Q Consensus       119 i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~---~~~~~~~~~~h~~~v~~  194 (223)
                      +||..........+ .+|...   +.+ .|.+      +.++++++.|+.|++||++...   ...++..+.+|...+.+
T Consensus       644 iwD~~~~~~~~~~~-~~h~~~---V~~v~f~~------~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~  713 (793)
T PLN00181        644 YYDLRNPKLPLCTM-IGHSKT---VSYVRFVD------SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF  713 (793)
T ss_pred             EEECCCCCccceEe-cCCCCC---EEEEEEeC------CCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence            99997654322233 488877   554 6754      7899999999999999997510   13567889999999999


Q ss_pred             EEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         195 VSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       195 v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      ++|+|++.+|++|+.|+.|++|+....
T Consensus       714 v~~s~~~~~lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        714 VGLSVSDGYIATGSETNEVFVYHKAFP  740 (793)
T ss_pred             EEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence            999999999999999999999997643

>KOG0643|consensus

Probab=99.63  E-value=1e-14  Score=108.73  Aligned_cols=122  Identities=14%  Similarity=0.163  Sum_probs=98.4

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCc
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGA  157 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~  157 (223)
                      .+++| +.+++.++|+       .+|++|.+|+.|.  ...+|-.-+|+.+.++  .||++.+  .++....     +..
T Consensus         5 ~l~GH-ERplTqiKyN-------~eGDLlFscaKD~--~~~vw~s~nGerlGty--~GHtGav--W~~Did~-----~s~   65 (327)
T KOG0643|consen    5 LLQGH-ERPLTQIKYN-------REGDLLFSCAKDS--TPTVWYSLNGERLGTY--DGHTGAV--WCCDIDW-----DSK   65 (327)
T ss_pred             ccccC-ccccceEEec-------CCCcEEEEecCCC--CceEEEecCCceeeee--cCCCceE--EEEEecC-----Ccc
Confidence            35677 9999999999       9999999999999  7888888788888865  5999995  2224444     688


Q ss_pred             EEEEecCCCcEEEEEcccCcccccceee----------------------------------------------------
Q psy3599         158 CVVTGSEDSCVYFLDIQSKEHKNAVNKL----------------------------------------------------  185 (223)
Q Consensus       158 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~----------------------------------------------------  185 (223)
                      .+++|+.|.++++||+++   ++.+..+                                                    
T Consensus        66 ~liTGSAD~t~kLWDv~t---Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k  142 (327)
T KOG0643|consen   66 HLITGSADQTAKLWDVET---GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK  142 (327)
T ss_pred             eeeeccccceeEEEEcCC---CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence            999999999999999988   5544443                                                    


Q ss_pred             -cccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         186 -QGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       186 -~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                       .-+.+.++.+.|.|.+.+|++|..||.|.+||++++
T Consensus       143 I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g  179 (327)
T KOG0643|consen  143 IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTG  179 (327)
T ss_pred             ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccC
Confidence             234456777888888888888888888888888876

>KOG1407|consensus

Probab=99.62  E-value=9.4e-15  Score=108.52  Aligned_cols=72  Identities=25%  Similarity=0.330  Sum_probs=65.8

Q ss_pred             EEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         143 VRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       143 i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ++..|+|     +|.++++|+.|..+.+||++.   .-|+..+..+..+|..++|+.+|.+||+||.|..|-|=++++|.
T Consensus       193 icI~f~p-----~GryfA~GsADAlvSLWD~~E---LiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd  264 (313)
T KOG1407|consen  193 ICIEFDP-----DGRYFATGSADALVSLWDVDE---LICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGD  264 (313)
T ss_pred             EEEEECC-----CCceEeeccccceeeccChhH---hhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCC
Confidence            4447899     799999999999999999999   88999999999999999999999999999999999888777764

>KOG0293|consensus

Probab=99.62  E-value=1.3e-14  Score=113.94  Aligned_cols=142  Identities=20%  Similarity=0.325  Sum_probs=117.7

Q ss_pred             ccCCcEEEEEECCCCceeeee---------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK---------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVC  115 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~---------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~  115 (223)
                      .|.+.|.-+.|+++|+.++++                     ++.+| ..+|..+.|+       ||.++|++|+-+.  
T Consensus       222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh-~~~V~yi~wS-------PDdryLlaCg~~e--  291 (519)
T KOG0293|consen  222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGH-SQPVSYIMWS-------PDDRYLLACGFDE--  291 (519)
T ss_pred             hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecc-cCceEEEEEC-------CCCCeEEecCchH--
Confidence            788999999999999998765                     45556 8899999999       9999999999888  


Q ss_pred             EEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccc-cCEEE
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHA-CPVLG  194 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~-~~v~~  194 (223)
                      .+.+||..+|..... ++.++...+  ..|+|+|     |+..+++|+.|+.+..||...    +.+..+++-+ ..|.+
T Consensus       292 ~~~lwDv~tgd~~~~-y~~~~~~S~--~sc~W~p-----Dg~~~V~Gs~dr~i~~wdlDg----n~~~~W~gvr~~~v~d  359 (519)
T KOG0293|consen  292 VLSLWDVDTGDLRHL-YPSGLGFSV--SSCAWCP-----DGFRFVTGSPDRTIIMWDLDG----NILGNWEGVRDPKVHD  359 (519)
T ss_pred             heeeccCCcchhhhh-cccCcCCCc--ceeEEcc-----CCceeEecCCCCcEEEecCCc----chhhcccccccceeEE
Confidence            799999999976553 333443443  4559999     899999999999999999886    5567777644 35899


Q ss_pred             EEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         195 VSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       195 v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      ++..+||..+++.+.|..|++++.++
T Consensus       360 lait~Dgk~vl~v~~d~~i~l~~~e~  385 (519)
T KOG0293|consen  360 LAITYDGKYVLLVTVDKKIRLYNREA  385 (519)
T ss_pred             EEEcCCCcEEEEEecccceeeechhh
Confidence            99999999999999999999998764

>KOG0274|consensus

Probab=99.62  E-value=2e-14  Score=120.92  Aligned_cols=101  Identities=23%  Similarity=0.344  Sum_probs=80.2

Q ss_pred             CeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCccccc
Q psy3599         103 PTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNA  181 (223)
Q Consensus       103 ~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~  181 (223)
                      +.++++|+.|.  ++++|++.++..+...  .+|...   |++ ..       ++.++++|+.|++|++||+.+   +++
T Consensus       301 ~~~~~sgs~D~--tVkVW~v~n~~~l~l~--~~h~~~---V~~v~~-------~~~~lvsgs~d~~v~VW~~~~---~~c  363 (537)
T KOG0274|consen  301 PFLLVSGSRDN--TVKVWDVTNGACLNLL--RGHTGP---VNCVQL-------DEPLLVSGSYDGTVKVWDPRT---GKC  363 (537)
T ss_pred             CceEeeccCCc--eEEEEeccCcceEEEe--cccccc---EEEEEe-------cCCEEEEEecCceEEEEEhhh---cee
Confidence            45555666666  6666666666555532  246666   444 23       478999999999999999999   999


Q ss_pred             ceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         182 VNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       182 ~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      ++++.+|...|.++.+... +.+++|+.|++|++||++++
T Consensus       364 l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~  402 (537)
T KOG0274|consen  364 LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTK  402 (537)
T ss_pred             eeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCch
Confidence            9999999999999988655 88999999999999999886

>KOG0305|consensus

Probab=99.62  E-value=7.3e-15  Score=120.24  Aligned_cols=141  Identities=18%  Similarity=0.259  Sum_probs=117.6

Q ss_pred             CCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEe
Q psy3599          59 TGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVL  120 (223)
Q Consensus        59 ~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~  120 (223)
                      .+.|.++.|+++|..++..                  .+..++...|.+++|.         +..+.+|+.++  .|..+
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~---------~~~lssGsr~~--~I~~~  285 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN---------SSVLSSGSRDG--KILNH  285 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc---------CceEEEecCCC--cEEEE
Confidence            5789999999999888655                  3444347889999996         67788888888  78888


Q ss_pred             cCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEec
Q psy3599         121 DKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNY  199 (223)
Q Consensus       121 d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~  199 (223)
                      |..........+ .+|...   ++. .|++     ++.++++|+.|+.+.|||...   .+++..+..|...|.+++|+|
T Consensus       286 dvR~~~~~~~~~-~~H~qe---VCgLkws~-----d~~~lASGgnDN~~~Iwd~~~---~~p~~~~~~H~aAVKA~awcP  353 (484)
T KOG0305|consen  286 DVRISQHVVSTL-QGHRQE---VCGLKWSP-----DGNQLASGGNDNVVFIWDGLS---PEPKFTFTEHTAAVKALAWCP  353 (484)
T ss_pred             EEecchhhhhhh-hcccce---eeeeEECC-----CCCeeccCCCccceEeccCCC---ccccEEEeccceeeeEeeeCC
Confidence            887666555433 589888   555 8999     899999999999999999987   788999999999999999999


Q ss_pred             C-CCEEEEEe--CCCcEEEeeCCCCC
Q psy3599         200 D-ESLLATSD--YQGLIILWSREKHE  222 (223)
Q Consensus       200 ~-~~~l~s~s--~d~~i~iwd~~~~~  222 (223)
                      - ..+||+|+  .|+.|++||..+++
T Consensus       354 ~q~~lLAsGGGs~D~~i~fwn~~~g~  379 (484)
T KOG0305|consen  354 WQSGLLATGGGSADRCIKFWNTNTGA  379 (484)
T ss_pred             CccCceEEcCCCcccEEEEEEcCCCc
Confidence            5 78899976  79999999998765

>KOG0267|consensus

Probab=99.61  E-value=8.4e-16  Score=127.64  Aligned_cols=144  Identities=21%  Similarity=0.264  Sum_probs=123.0

Q ss_pred             ccccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEE
Q psy3599          55 QLRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCI  116 (223)
Q Consensus        55 ~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (223)
                      +.+|.+.|-++.++....++..+                  .+.+| ...+..+.|+       |-+.++++++.+.  -
T Consensus        66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh-~~~~~sv~f~-------P~~~~~a~gStdt--d  135 (825)
T KOG0267|consen   66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGH-LLNITSVDFH-------PYGEFFASGSTDT--D  135 (825)
T ss_pred             eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhcc-ccCcceeeec-------cceEEeccccccc--c
Confidence            55788999999998865555332                  34466 7889999999       9999999999888  8


Q ss_pred             EEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEE
Q psy3599         117 LKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGV  195 (223)
Q Consensus       117 v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v  195 (223)
                      +++||.....+... + .+|...   +.+ .|+|     +|.++++|++|..++|||...   ++.+..|+.|+..+..+
T Consensus       136 ~~iwD~Rk~Gc~~~-~-~s~~~v---v~~l~lsP-----~Gr~v~~g~ed~tvki~d~~a---gk~~~ef~~~e~~v~sl  202 (825)
T KOG0267|consen  136 LKIWDIRKKGCSHT-Y-KSHTRV---VDVLRLSP-----DGRWVASGGEDNTVKIWDLTA---GKLSKEFKSHEGKVQSL  202 (825)
T ss_pred             ceehhhhccCceee-e-cCCcce---eEEEeecC-----CCceeeccCCcceeeeecccc---ccccccccccccccccc
Confidence            99999985546553 3 377666   777 8999     799999999999999999999   99999999999999999


Q ss_pred             EEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         196 SFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       196 ~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      .|+|..-++++||.|+++++||+++.
T Consensus       203 e~hp~e~Lla~Gs~d~tv~f~dletf  228 (825)
T KOG0267|consen  203 EFHPLEVLLAPGSSDRTVRFWDLETF  228 (825)
T ss_pred             ccCchhhhhccCCCCceeeeecccee
Confidence            99999999999999999999999853

>KOG0267|consensus

Probab=99.61  E-value=1.1e-15  Score=127.08  Aligned_cols=141  Identities=21%  Similarity=0.265  Sum_probs=118.1

Q ss_pred             CcEEEEEECCCCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCc
Q psy3599          60 GVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSS  139 (223)
Q Consensus        60 ~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~  139 (223)
                      |....+..+..++......+.+| ..+|.++.|+       .+..+|+.|+.++  .+++||++....+...  .||...
T Consensus        47 g~~~k~~L~~i~kp~~i~S~~~h-espIeSl~f~-------~~E~Llaagsasg--tiK~wDleeAk~vrtL--tgh~~~  114 (825)
T KOG0267|consen   47 GEDEKVNLWAIGKPNAITSLTGH-ESPIESLTFD-------TSERLLAAGSASG--TIKVWDLEEAKIVRTL--TGHLLN  114 (825)
T ss_pred             CCceeeccccccCCchhheeecc-CCcceeeecC-------cchhhhcccccCC--ceeeeehhhhhhhhhh--hccccC
Confidence            33333334444444444457788 9999999999       8889999999999  8999999988777654  499888


Q ss_pred             ceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         140 KYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       140 ~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      .  +...|+|     -+.+.++|+.|+-+++||.+.   .-|.+.+++|...|..+.|+|+|..+++++.|.+++|||+.
T Consensus       115 ~--~sv~f~P-----~~~~~a~gStdtd~~iwD~Rk---~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~  184 (825)
T KOG0267|consen  115 I--TSVDFHP-----YGEFFASGSTDTDLKIWDIRK---KGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT  184 (825)
T ss_pred             c--ceeeecc-----ceEEeccccccccceehhhhc---cCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccc
Confidence            5  5557999     588899999999999999998   78999999999999999999999999999999999999997


Q ss_pred             CCC
Q psy3599         220 KHE  222 (223)
Q Consensus       220 ~~~  222 (223)
                      .|+
T Consensus       185 agk  187 (825)
T KOG0267|consen  185 AGK  187 (825)
T ss_pred             ccc
Confidence            765

>KOG0292|consensus

Probab=99.61  E-value=1.7e-14  Score=122.59  Aligned_cols=147  Identities=14%  Similarity=0.165  Sum_probs=118.6

Q ss_pred             ccccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEE
Q psy3599          55 QLRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCI  116 (223)
Q Consensus        55 ~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (223)
                      |..|+|.|..+.|.|++.+..++                  .+.+| ..-|..+.|+       +.-..++++|||.  +
T Consensus        47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GH-lDYVRt~~FH-------heyPWIlSASDDQ--T  116 (1202)
T KOG0292|consen   47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGH-LDYVRTVFFH-------HEYPWILSASDDQ--T  116 (1202)
T ss_pred             hhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccc-cceeEEeecc-------CCCceEEEccCCC--e
Confidence            34678888888888876665443                  55677 8899999999       8889999999999  9


Q ss_pred             EEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccC-----ccc------------
Q psy3599         117 LKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSK-----EHK------------  179 (223)
Q Consensus       117 v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~-----~~~------------  179 (223)
                      |+||+..++.++...  .||.-.+  .++.|+|     ..++++|+|.|.+|++||+..-     .++            
T Consensus       117 IrIWNwqsr~~iavl--tGHnHYV--McAqFhp-----tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~  187 (1202)
T KOG0292|consen  117 IRIWNWQSRKCIAVL--TGHNHYV--MCAQFHP-----TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGN  187 (1202)
T ss_pred             EEEEeccCCceEEEE--ecCceEE--EeeccCC-----ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccc
Confidence            999999999887644  5998873  4448999     6999999999999999997420     001            


Q ss_pred             -------cc--ceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         180 -------NA--VNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       180 -------~~--~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                             ..  .+.+.+|...|+-++|+|.-.++++|+.|..|++|....
T Consensus       188 ~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne  237 (1202)
T KOG0292|consen  188 SDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE  237 (1202)
T ss_pred             hhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc
Confidence                   11  134579999999999999999999999999999998754

>KOG0306|consensus

Probab=99.61  E-value=2.3e-14  Score=119.69  Aligned_cols=115  Identities=24%  Similarity=0.297  Sum_probs=103.4

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEe
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTG  162 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sg  162 (223)
                      +..|.|+.+|       ||+.+|+.+-.|.  ++++|-+++-..-...  .||.-+   +.| ..+|     ++.+++||
T Consensus       508 ~ddvL~v~~S-------pdgk~LaVsLLdn--TVkVyflDtlKFflsL--YGHkLP---V~smDIS~-----DSklivTg  568 (888)
T KOG0306|consen  508 EDDVLCVSVS-------PDGKLLAVSLLDN--TVKVYFLDTLKFFLSL--YGHKLP---VLSMDISP-----DSKLIVTG  568 (888)
T ss_pred             cccEEEEEEc-------CCCcEEEEEeccC--eEEEEEecceeeeeee--cccccc---eeEEeccC-----CcCeEEec
Confidence            5789999999       9999999999888  8999988877655543  599888   555 8999     89999999


Q ss_pred             cCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         163 SEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       163 s~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      |.|..|++|-++-   |.|-+++.+|.+.|+++.|-|....+.|+|.|+.|+-||-.+
T Consensus       569 SADKnVKiWGLdF---GDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k  623 (888)
T KOG0306|consen  569 SADKNVKIWGLDF---GDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK  623 (888)
T ss_pred             cCCCceEEecccc---chhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh
Confidence            9999999999999   999999999999999999999999999999999999998654

>KOG1034|consensus

Probab=99.61  E-value=2.3e-14  Score=109.60  Aligned_cols=120  Identities=23%  Similarity=0.328  Sum_probs=98.5

Q ss_pred             CCCeeEEEEeecccccCC-CCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEE
Q psy3599          84 DCPITCLSWRSWISREAR-DPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVT  161 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~s  161 (223)
                      ++.-..++|+..    .. ..-++|.++.-+  .|++.|+.+++.....  .+|...   |.. .++|.    +.+++++
T Consensus        89 ~Esfytcsw~yd----~~~~~p~la~~G~~G--vIrVid~~~~~~~~~~--~ghG~s---INeik~~p~----~~qlvls  153 (385)
T KOG1034|consen   89 DESFYTCSWSYD----SNTGNPFLAAGGYLG--VIRVIDVVSGQCSKNY--RGHGGS---INEIKFHPD----RPQLVLS  153 (385)
T ss_pred             CcceEEEEEEec----CCCCCeeEEeeccee--EEEEEecchhhhccce--eccCcc---chhhhcCCC----CCcEEEE
Confidence            667778888721    12 245677777777  7999999988776654  488877   444 68996    7889999


Q ss_pred             ecCCCcEEEEEcccCcccccceee---cccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         162 GSEDSCVYFLDIQSKEHKNAVNKL---QGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       162 gs~dg~v~iwd~~~~~~~~~~~~~---~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      +|.|.+|++|++++   ..|+..+   .+|.+.|.++.|+++|.++++++.|.++++|++..+
T Consensus       154 ~SkD~svRlwnI~~---~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  154 ASKDHSVRLWNIQT---DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             ecCCceEEEEeccC---CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence            99999999999999   8887765   679999999999999999999999999999999754

>KOG1446|consensus

Probab=99.60  E-value=4.8e-14  Score=107.14  Aligned_cols=117  Identities=20%  Similarity=0.319  Sum_probs=97.7

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEe
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTG  162 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sg  162 (223)
                      ...|.++.|+       .+|.+++++++|-  .+++||..++.++...  ..+...   +.. +|..     ..+.++.+
T Consensus        14 ~~~i~sl~fs-------~~G~~litss~dD--sl~LYd~~~g~~~~ti--~skkyG---~~~~~Fth-----~~~~~i~s   74 (311)
T KOG1446|consen   14 NGKINSLDFS-------DDGLLLITSSEDD--SLRLYDSLSGKQVKTI--NSKKYG---VDLACFTH-----HSNTVIHS   74 (311)
T ss_pred             CCceeEEEec-------CCCCEEEEecCCC--eEEEEEcCCCceeeEe--eccccc---ccEEEEec-----CCceEEEc
Confidence            7899999999       9999999988877  7999999999888754  233223   444 5665     35556656


Q ss_pred             cC--CCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         163 SE--DSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       163 s~--dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +.  |.+|+.-++..   .+.+..+.||+..|++++.+|-+..+++++.|++|++||+|..+
T Consensus        75 Stk~d~tIryLsl~d---NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~  133 (311)
T KOG1446|consen   75 STKEDDTIRYLSLHD---NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK  133 (311)
T ss_pred             cCCCCCceEEEEeec---CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC
Confidence            65  88999999999   89999999999999999999999999999999999999999654

>KOG0274|consensus

Probab=99.60  E-value=3.9e-14  Score=119.23  Aligned_cols=118  Identities=28%  Similarity=0.374  Sum_probs=104.2

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      .+.+| .+.|.++++.       ..+.+|++|+.|.  ++++||..++.+....  .+|...   +.+ ..       .+
T Consensus       244 ~l~GH-~g~V~~l~~~-------~~~~~lvsgS~D~--t~rvWd~~sg~C~~~l--~gh~st---v~~~~~-------~~  301 (537)
T KOG0274|consen  244 RLVGH-FGGVWGLAFP-------SGGDKLVSGSTDK--TERVWDCSTGECTHSL--QGHTSS---VRCLTI-------DP  301 (537)
T ss_pred             eccCC-CCCceeEEEe-------cCCCEEEEEecCC--cEEeEecCCCcEEEEe--cCCCce---EEEEEc-------cC
Confidence            37788 9999999998       7789999999999  9999999999888754  489888   555 33       36


Q ss_pred             cEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         157 ACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ..+++|+.|..|++|++++   +.++..+.+|..+|.++..+  +.++++|+.|++|++||+++++
T Consensus       302 ~~~~sgs~D~tVkVW~v~n---~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~  362 (537)
T KOG0274|consen  302 FLLVSGSRDNTVKVWDVTN---GACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGK  362 (537)
T ss_pred             ceEeeccCCceEEEEeccC---cceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhce
Confidence            7888999999999999999   99999999999999999986  8899999999999999998765

>KOG0308|consensus

Probab=99.58  E-value=2.7e-14  Score=117.56  Aligned_cols=143  Identities=19%  Similarity=0.292  Sum_probs=110.5

Q ss_pred             cCCcEEEEEECCCCceeeee--------eeeecCCCCeeEEEE-eecccccCCCCeEEEEEeCCCeEEEEEecCCCceE-
Q psy3599          58 STGVIVSILCDDLGRLSKGK--------RLVLSQDCPITCLSW-RSWISREARDPTLLVNIAANAVCILKVLDKEGAVQ-  127 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~--------~~~~~~~~~i~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~-  127 (223)
                      +...+.+++-|.+.+++...        .+..| ..-|.|+++ .       ++..++|+|+.|+  .|.+||.+++.. 
T Consensus        84 ~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H-~DYVkcla~~a-------k~~~lvaSgGLD~--~IflWDin~~~~~  153 (735)
T KOG0308|consen   84 NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTH-KDYVKCLAYIA-------KNNELVASGGLDR--KIFLWDINTGTAT  153 (735)
T ss_pred             CCCceEEecCCceEEEeecccCcchhHhhhhcc-cchheeeeecc-------cCceeEEecCCCc--cEEEEEccCcchh
Confidence            34456666655555555332        34455 889999999 5       8889999999999  899999997632 


Q ss_pred             Eeeee--------eccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEe
Q psy3599         128 LKRKF--------NVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFN  198 (223)
Q Consensus       128 ~~~~~--------~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~  198 (223)
                      +...+        ..|+...   +-+ +.++     .+..+++|+..+.+++||.++   .+.+.+++||...|.++..+
T Consensus       154 l~~s~n~~t~~sl~sG~k~s---iYSLA~N~-----t~t~ivsGgtek~lr~wDprt---~~kimkLrGHTdNVr~ll~~  222 (735)
T KOG0308|consen  154 LVASFNNVTVNSLGSGPKDS---IYSLAMNQ-----TGTIIVSGGTEKDLRLWDPRT---CKKIMKLRGHTDNVRVLLVN  222 (735)
T ss_pred             hhhhccccccccCCCCCccc---eeeeecCC-----cceEEEecCcccceEEecccc---ccceeeeeccccceEEEEEc
Confidence            11111        1144444   333 5566     578999999999999999999   88899999999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         199 YDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       199 ~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      ++|..++++|.||+|++||+...
T Consensus       223 dDGt~~ls~sSDgtIrlWdLgqQ  245 (735)
T KOG0308|consen  223 DDGTRLLSASSDGTIRLWDLGQQ  245 (735)
T ss_pred             CCCCeEeecCCCceEEeeecccc
Confidence            99999999999999999999753

>KOG4283|consensus

Probab=99.58  E-value=2.2e-14  Score=108.41  Aligned_cols=151  Identities=17%  Similarity=0.229  Sum_probs=113.6

Q ss_pred             cCCcEEEEEECCCCceeeeeeee----ecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeee
Q psy3599          58 STGVIVSILCDDLGRLSKGKRLV----LSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFN  133 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~  133 (223)
                      ..|.+.+-+||.+-+++.+..++    +..++.|++-+++    ++.-...+++++.++.  .|++.|+.+|..... + 
T Consensus       113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamS----p~a~sHcLiA~gtr~~--~VrLCDi~SGs~sH~-L-  184 (397)
T KOG4283|consen  113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMS----PMAMSHCLIAAGTRDV--QVRLCDIASGSFSHT-L-  184 (397)
T ss_pred             cCceeecccccceEEEeecccceeeEEeecCceeehhhcC----hhhhcceEEEEecCCC--cEEEEeccCCcceee-e-
Confidence            34666677777777777665433    3335677777776    3334467888888888  899999999976654 4 


Q ss_pred             ccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCc---------c---cccceeecccccCEEEEEEecCC
Q psy3599         134 VNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKE---------H---KNAVNKLQGHACPVLGVSFNYDE  201 (223)
Q Consensus       134 ~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~---------~---~~~~~~~~~h~~~v~~v~~~~~~  201 (223)
                      .||++.+  +...|+|.    ..-.|++|+.||.|++||++...         +   ...+..-.+|.+.|+.++|..++
T Consensus       185 sGHr~~v--laV~Wsp~----~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~  258 (397)
T KOG4283|consen  185 SGHRDGV--LAVEWSPS----SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA  258 (397)
T ss_pred             ccccCce--EEEEeccC----ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc
Confidence            5999995  44489996    57788999999999999998620         0   01122235788899999999999


Q ss_pred             CEEEEEeCCCcEEEeeCCCCC
Q psy3599         202 SLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       202 ~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .++++++.|..+++|+..+|+
T Consensus       259 ~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  259 RYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             hhhhhccCccceEEeecccCc
Confidence            999999999999999988765

>KOG0641|consensus

Probab=99.58  E-value=1.7e-13  Score=100.15  Aligned_cols=121  Identities=21%  Similarity=0.353  Sum_probs=87.8

Q ss_pred             cCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCC--Cce----EEee-------------------------
Q psy3599          82 SQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKE--GAV----QLKR-------------------------  130 (223)
Q Consensus        82 ~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~--~~~----~~~~-------------------------  130 (223)
                      |+.+.|+|.+|+       |+|.+|++++.|+  ++++..++  +..    .+..                         
T Consensus        87 hhkgsiyc~~ws-------~~geliatgsndk--~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s  157 (350)
T KOG0641|consen   87 HHKGSIYCTAWS-------PCGELIATGSNDK--TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILAS  157 (350)
T ss_pred             ccCccEEEEEec-------CccCeEEecCCCc--eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEe
Confidence            558899999999       9999999999888  66554322  111    0000                         


Q ss_pred             --------------------eeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecc--c
Q psy3599         131 --------------------KFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQG--H  188 (223)
Q Consensus       131 --------------------~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~--h  188 (223)
                                          .+ .||.+.   +-..++-     ++-++++|+.|.+|++||++.   ..++..+..  |
T Consensus       158 ~gagdc~iy~tdc~~g~~~~a~-sghtgh---ilalysw-----n~~m~~sgsqdktirfwdlrv---~~~v~~l~~~~~  225 (350)
T KOG0641|consen  158 AGAGDCKIYITDCGRGQGFHAL-SGHTGH---ILALYSW-----NGAMFASGSQDKTIRFWDLRV---NSCVNTLDNDFH  225 (350)
T ss_pred             cCCCcceEEEeecCCCCcceee-cCCccc---EEEEEEe-----cCcEEEccCCCceEEEEeeec---cceeeeccCccc
Confidence                                11 134444   2222222     577999999999999999998   667666531  2


Q ss_pred             -----ccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCCC
Q psy3599         189 -----ACPVLGVSFNYDESLLATSDYQGLIILWSREKHEP  223 (223)
Q Consensus       189 -----~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~  223 (223)
                           .+.|.+++..|.|.+|++|-.|.+..+||++.+.+
T Consensus       226 ~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~  265 (350)
T KOG0641|consen  226 DGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM  265 (350)
T ss_pred             CCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence                 35789999999999999999999999999997653

>KOG0641|consensus

Probab=99.57  E-value=2.9e-13  Score=99.01  Aligned_cols=108  Identities=18%  Similarity=0.235  Sum_probs=86.1

Q ss_pred             CeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCc--ceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCccc
Q psy3599         103 PTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSS--KYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHK  179 (223)
Q Consensus       103 ~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~--~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~  179 (223)
                      +.++++++.|.  +++.||+.-..++...-..-|...  ...+.. +..|     .|.+|++|-.|.++.+||++.   +
T Consensus       194 ~~m~~sgsqdk--tirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-----sgrll~sg~~dssc~lydirg---~  263 (350)
T KOG0641|consen  194 GAMFASGSQDK--TIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-----SGRLLASGHADSSCMLYDIRG---G  263 (350)
T ss_pred             CcEEEccCCCc--eEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-----CcceeeeccCCCceEEEEeeC---C
Confidence            45677788787  899999876655554211112211  011555 6788     699999999999999999999   8


Q ss_pred             ccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         180 NAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       180 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      ..+..+..|...|.|+.|+|.-.++++++.|.+|++=|+..
T Consensus       264 r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  264 RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence            99999999999999999999999999999999999998863

>KOG0289|consensus

Probab=99.57  E-value=1.6e-13  Score=108.34  Aligned_cols=140  Identities=16%  Similarity=0.271  Sum_probs=111.6

Q ss_pred             ccCCcEEEEEECCCCceeeee---------------eeeec----CCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK---------------RLVLS----QDCPITCLSWRSWISREARDPTLLVNIAANAVCIL  117 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~---------------~~~~~----~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v  117 (223)
                      .|.+.|..+...|+|.++...               .+..+    .+-.+++..|+       |||.+|++|..|+  .+
T Consensus       301 ~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH-------pDgLifgtgt~d~--~v  371 (506)
T KOG0289|consen  301 PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH-------PDGLIFGTGTPDG--VV  371 (506)
T ss_pred             cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEc-------CCceEEeccCCCc--eE
Confidence            477778888888877765332               11111    13468999999       9999999999999  89


Q ss_pred             EEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeeccc-ccCEEEE
Q psy3599         118 KVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGH-ACPVLGV  195 (223)
Q Consensus       118 ~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h-~~~v~~v  195 (223)
                      ++||++++..+. .|+ +|.+.   ++. .|+-     +|.+++++++|++|++||++.   .+.+.++.-. ...+.++
T Consensus       372 kiwdlks~~~~a-~Fp-ght~~---vk~i~FsE-----NGY~Lat~add~~V~lwDLRK---l~n~kt~~l~~~~~v~s~  438 (506)
T KOG0289|consen  372 KIWDLKSQTNVA-KFP-GHTGP---VKAISFSE-----NGYWLATAADDGSVKLWDLRK---LKNFKTIQLDEKKEVNSL  438 (506)
T ss_pred             EEEEcCCccccc-cCC-CCCCc---eeEEEecc-----CceEEEEEecCCeEEEEEehh---hcccceeeccccccceeE
Confidence            999999887544 565 99998   666 8998     899999999999999999999   6777766542 2369999


Q ss_pred             EEecCCCEEEEEeCCCcEEEeeC
Q psy3599         196 SFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       196 ~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      .|.+.|.+|+.++.|=.|++++-
T Consensus       439 ~fD~SGt~L~~~g~~l~Vy~~~k  461 (506)
T KOG0289|consen  439 SFDQSGTYLGIAGSDLQVYICKK  461 (506)
T ss_pred             EEcCCCCeEEeecceeEEEEEec
Confidence            99999999999988877777763

>KOG0305|consensus

Probab=99.57  E-value=1.9e-13  Score=112.08  Aligned_cols=146  Identities=15%  Similarity=0.189  Sum_probs=116.3

Q ss_pred             ccccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEE
Q psy3599          55 QLRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCI  116 (223)
Q Consensus        55 ~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (223)
                      +.+|...|..++|+++++.++..                  .+..| ...|.+++|+|      -...+||+|+....+.
T Consensus       297 ~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H-~aAVKA~awcP------~q~~lLAsGGGs~D~~  369 (484)
T KOG0305|consen  297 LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEH-TAAVKALAWCP------WQSGLLATGGGSADRC  369 (484)
T ss_pred             hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEecc-ceeeeEeeeCC------CccCceEEcCCCcccE
Confidence            34688999999999988887655                  34445 88999999995      4677888877544449


Q ss_pred             EEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEE-ecCCCcEEEEEcccCcccccceeecccccCEEE
Q psy3599         117 LKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVT-GSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLG  194 (223)
Q Consensus       117 v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~s-gs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~  194 (223)
                      |++||..++..+...   .-...   |+. .|++.    ..+++.+ |-.++.|.||+..+   ...+..+.+|...|..
T Consensus       370 i~fwn~~~g~~i~~v---dtgsQ---VcsL~Wsk~----~kEi~sthG~s~n~i~lw~~ps---~~~~~~l~gH~~RVl~  436 (484)
T KOG0305|consen  370 IKFWNTNTGARIDSV---DTGSQ---VCSLIWSKK----YKELLSTHGYSENQITLWKYPS---MKLVAELLGHTSRVLY  436 (484)
T ss_pred             EEEEEcCCCcEeccc---ccCCc---eeeEEEcCC----CCEEEEecCCCCCcEEEEeccc---cceeeeecCCcceeEE
Confidence            999999999877753   22333   665 89994    2344444 34467899999999   8999999999999999


Q ss_pred             EEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         195 VSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       195 v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      ++++|+|..+++|+.|.++++|++-.
T Consensus       437 la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  437 LALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             EEECCCCCEEEEecccCcEEeccccC
Confidence            99999999999999999999998754

>KOG0646|consensus

Probab=99.56  E-value=1.1e-13  Score=109.99  Aligned_cols=145  Identities=21%  Similarity=0.267  Sum_probs=101.1

Q ss_pred             cCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEE
Q psy3599          58 STGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKV  119 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i  119 (223)
                      -.|.|.++..+|.|.++...                  .+..| -.+|+++.|+       .|+.+|++++.|+  .|.+
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH-YQ~ITcL~fs-------~dgs~iiTgskDg--~V~v  149 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAH-YQSITCLKFS-------DDGSHIITGSKDG--AVLV  149 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhh-ccceeEEEEe-------CCCcEEEecCCCc--cEEE
Confidence            34555666555555544332                  33455 7899999999       9999999999999  7888


Q ss_pred             ecCCCc--------eEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccc---------
Q psy3599         120 LDKEGA--------VQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAV---------  182 (223)
Q Consensus       120 ~d~~~~--------~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~---------  182 (223)
                      |++..-        ......| ..|.-.+.-+.+.+.+     ....++|.|.|.++++||+..   +.++         
T Consensus       150 W~l~~lv~a~~~~~~~p~~~f-~~HtlsITDl~ig~Gg-----~~~rl~TaS~D~t~k~wdlS~---g~LLlti~fp~si  220 (476)
T KOG0646|consen  150 WLLTDLVSADNDHSVKPLHIF-SDHTLSITDLQIGSGG-----TNARLYTASEDRTIKLWDLSL---GVLLLTITFPSSI  220 (476)
T ss_pred             EEEEeecccccCCCccceeee-ccCcceeEEEEecCCC-----ccceEEEecCCceEEEEEecc---ceeeEEEecCCcc
Confidence            875321        0112233 2666553222223333     356889999999999999866   3222         


Q ss_pred             ------------------------------------------------eeeccccc--CEEEEEEecCCCEEEEEeCCCc
Q psy3599         183 ------------------------------------------------NKLQGHAC--PVLGVSFNYDESLLATSDYQGL  212 (223)
Q Consensus       183 ------------------------------------------------~~~~~h~~--~v~~v~~~~~~~~l~s~s~d~~  212 (223)
                                                                      ..+.+|++  .|+|++.+-||..|++|+.||.
T Consensus       221 ~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~  300 (476)
T KOG0646|consen  221 KAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK  300 (476)
T ss_pred             eeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCC
Confidence                                                            22347777  9999999999999999999999


Q ss_pred             EEEeeCCCC
Q psy3599         213 IILWSREKH  221 (223)
Q Consensus       213 i~iwd~~~~  221 (223)
                      |++||+.+.
T Consensus       301 VcvWdi~S~  309 (476)
T KOG0646|consen  301 VCVWDIYSK  309 (476)
T ss_pred             EEEEecchH
Confidence            999998654

>KOG1332|consensus

Probab=99.55  E-value=1.8e-14  Score=106.14  Aligned_cols=129  Identities=19%  Similarity=0.319  Sum_probs=94.5

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCC--ceEEeeeeeccccCcceeEEE-eeecCccc-
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEG--AVQLKRKFNVNHKSSKYQVRS-TFCPIMSF-  153 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~--~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~-  153 (223)
                      ....| ...|++++|.|+     ..|-+|++++.|+  .|.+.+.+.  +.....+. ..|...   +.+ +|.|...+ 
T Consensus        97 e~~~h-~~SVNsV~waph-----eygl~LacasSDG--~vsvl~~~~~g~w~t~ki~-~aH~~G---vnsVswapa~~~g  164 (299)
T KOG1332|consen   97 EHAAH-SASVNSVAWAPH-----EYGLLLACASSDG--KVSVLTYDSSGGWTTSKIV-FAHEIG---VNSVSWAPASAPG  164 (299)
T ss_pred             hhhhh-cccceeeccccc-----ccceEEEEeeCCC--cEEEEEEcCCCCccchhhh-hccccc---cceeeecCcCCCc
Confidence            45566 889999999954     5677888888888  566655442  33333233 488877   455 68885211 


Q ss_pred             --------CCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecC----CCEEEEEeCCCcEEEeeCC
Q psy3599         154 --------REGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD----ESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       154 --------~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~----~~~l~s~s~d~~i~iwd~~  219 (223)
                              .....|++|+.|..|+||+... ..-..-..+.+|.+.|+.++|.|.    ..++|++|.||++.||-.+
T Consensus       165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~-~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDS-DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             cccccCcccccceeeccCCccceeeeecCC-cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence                    0125799999999999999988 112344568999999999999996    3579999999999999765

>KOG0772|consensus

Probab=99.54  E-value=1.5e-13  Score=110.67  Aligned_cols=146  Identities=19%  Similarity=0.319  Sum_probs=107.1

Q ss_pred             ccCCcEEEEEECCCCceeeee----------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCe
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK----------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAV  114 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~----------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~  114 (223)
                      .+...|.++.++|.|.-+.+.                      .++-.+...|.++.|+       +.|..|++.+... 
T Consensus       165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys-------~Tg~~iLvvsg~a-  236 (641)
T KOG0772|consen  165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYS-------VTGDQILVVSGSA-  236 (641)
T ss_pred             CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeec-------CCCCeEEEEecCc-
Confidence            456778889999966544333                      3333446789999999       8888877777666 


Q ss_pred             EEEEEecCCCceEEeeee----------eccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccce
Q psy3599         115 CILKVLDKEGAVQLKRKF----------NVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVN  183 (223)
Q Consensus       115 ~~v~i~d~~~~~~~~~~~----------~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~  183 (223)
                       ..+++|-.....+....          ..||...   ++| +|+|.    +...+++++.||++++||+...  .+.+.
T Consensus       237 -qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~---lt~g~whP~----~k~~FlT~s~DgtlRiWdv~~~--k~q~q  306 (641)
T KOG0772|consen  237 -QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAE---LTCGCWHPD----NKEEFLTCSYDGTLRIWDVNNT--KSQLQ  306 (641)
T ss_pred             -ceeEEccCCceeeeeeccchhhhhhhccCCceee---eeccccccC----cccceEEecCCCcEEEEecCCc--hhhee
Confidence             78888877554333211          1467666   788 99997    6889999999999999999872  22222


Q ss_pred             eec-----ccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         184 KLQ-----GHACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       184 ~~~-----~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      .++     +..-.+...+|+|++..||+|+.||+|.+|+.+.
T Consensus       307 Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~  348 (641)
T KOG0772|consen  307 VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGS  348 (641)
T ss_pred             EEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCC
Confidence            222     2344788999999999999999999999999753

>KOG0308|consensus

Probab=99.54  E-value=1.8e-13  Score=112.80  Aligned_cols=115  Identities=15%  Similarity=0.175  Sum_probs=104.7

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEe
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTG  162 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sg  162 (223)
                      ..+|++++..       +.|..|++|+..+  .+++||..++..+...  .||+..   +++ ..++     +|..++++
T Consensus       171 k~siYSLA~N-------~t~t~ivsGgtek--~lr~wDprt~~kimkL--rGHTdN---Vr~ll~~d-----DGt~~ls~  231 (735)
T KOG0308|consen  171 KDSIYSLAMN-------QTGTIIVSGGTEK--DLRLWDPRTCKKIMKL--RGHTDN---VRVLLVND-----DGTRLLSA  231 (735)
T ss_pred             ccceeeeecC-------CcceEEEecCccc--ceEEeccccccceeee--eccccc---eEEEEEcC-----CCCeEeec
Confidence            6789999998       8899999999888  8999999998877754  599999   777 6777     89999999


Q ss_pred             cCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         163 SEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       163 s~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      |.||+|++||+..   ..|+.++..|+..|+++..+|+-..+.+|+.||.|..=|+++
T Consensus       232 sSDgtIrlWdLgq---QrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  232 SSDGTIRLWDLGQ---QRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             CCCceEEeeeccc---cceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence            9999999999999   899999999999999999999999999999999999888876

>KOG0269|consensus

Probab=99.54  E-value=4.5e-14  Score=118.28  Aligned_cols=120  Identities=16%  Similarity=0.250  Sum_probs=94.6

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS  163 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs  163 (223)
                      .+.|.+++|+      |..+..|+++.+++  .+.+||+.........+ .+|.+.+  .++.|+|     ++.+|+||+
T Consensus       176 SESiRDV~fs------p~~~~~F~s~~dsG--~lqlWDlRqp~r~~~k~-~AH~GpV--~c~nwhP-----nr~~lATGG  239 (839)
T KOG0269|consen  176 SESIRDVKFS------PGYGNKFASIHDSG--YLQLWDLRQPDRCEKKL-TAHNGPV--LCLNWHP-----NREWLATGG  239 (839)
T ss_pred             chhhhceeec------cCCCceEEEecCCc--eEEEeeccCchhHHHHh-hcccCce--EEEeecC-----CCceeeecC
Confidence            7799999999      46789999999999  89999997554444344 4999996  5558999     899999999


Q ss_pred             CCCcEEEEEcccCcccccceeecccccCEEEEEEecC-CCEEEEEe--CCCcEEEeeCCCC
Q psy3599         164 EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD-ESLLATSD--YQGLIILWSREKH  221 (223)
Q Consensus       164 ~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s--~d~~i~iwd~~~~  221 (223)
                      .|+.|+|||..... ...+.++. --.+|.+|.|.|. ...|++++  .|-.|++||++.+
T Consensus       240 RDK~vkiWd~t~~~-~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  240 RDKMVKIWDMTDSR-AKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP  298 (839)
T ss_pred             CCccEEEEeccCCC-ccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence            99999999998611 23344443 2347899999997 55788887  4778999999864

>KOG0301|consensus

Probab=99.54  E-value=1.3e-13  Score=114.25  Aligned_cols=135  Identities=16%  Similarity=0.283  Sum_probs=107.4

Q ss_pred             ccCCcEEEEE-----------ECCCCceeeee----eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEec
Q psy3599          57 RSTGVIVSIL-----------CDDLGRLSKGK----RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLD  121 (223)
Q Consensus        57 ~~~~~i~~~~-----------~~~~~~~~~~~----~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d  121 (223)
                      +|.+.|.+++           ||.+.++|...    .+++| ..+|++++.-       +++ .+++||.|+  ++++|.
T Consensus        99 gH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH-~asVWAv~~l-------~e~-~~vTgsaDK--tIklWk  167 (745)
T KOG0301|consen   99 GHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGH-TASVWAVASL-------PEN-TYVTGSADK--TIKLWK  167 (745)
T ss_pred             ccccceeeeecCCcCceEecccccceEEecchhhhcccCCc-chheeeeeec-------CCC-cEEeccCcc--eeeecc
Confidence            5666555555           44444444332    56788 8999999998       776 788999888  899998


Q ss_pred             CCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecC
Q psy3599         122 KEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD  200 (223)
Q Consensus       122 ~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~  200 (223)
                      -  +..+. .|. ||.+-   ++. ++-+      +..+++++.||.|+.|++ +   ++++....+|...|.+++...+
T Consensus       168 ~--~~~l~-tf~-gHtD~---VRgL~vl~------~~~flScsNDg~Ir~w~~-~---ge~l~~~~ghtn~vYsis~~~~  230 (745)
T KOG0301|consen  168 G--GTLLK-TFS-GHTDC---VRGLAVLD------DSHFLSCSNDGSIRLWDL-D---GEVLLEMHGHTNFVYSISMALS  230 (745)
T ss_pred             C--Cchhh-hhc-cchhh---eeeeEEec------CCCeEeecCCceEEEEec-c---CceeeeeeccceEEEEEEecCC
Confidence            5  33444 554 99888   776 6655      678999999999999999 5   7899999999999999998888


Q ss_pred             CCEEEEEeCCCcEEEeeCC
Q psy3599         201 ESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       201 ~~~l~s~s~d~~i~iwd~~  219 (223)
                      +..++|++.|++++||+..
T Consensus       231 ~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  231 DGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             CCeEEEecCCceEEEeecC
Confidence            8999999999999999854

>KOG1446|consensus

Probab=99.54  E-value=9.6e-13  Score=100.15  Aligned_cols=142  Identities=18%  Similarity=0.241  Sum_probs=103.3

Q ss_pred             ccCCcEEEEEECCCCceeeee-----------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeC--CCeEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK-----------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAA--NAVCIL  117 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~-----------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~v  117 (223)
                      ...+.|.++.|+.+|..+.+.                 .....+...+..++|.       .....++.++.  |.  .+
T Consensus        12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Ft-------h~~~~~i~sStk~d~--tI   82 (311)
T KOG1446|consen   12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFT-------HHSNTVIHSSTKEDD--TI   82 (311)
T ss_pred             cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEe-------cCCceEEEccCCCCC--ce
Confidence            356788888888888776543                 1112225577788887       44444444442  33  45


Q ss_pred             EEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEE
Q psy3599         118 KVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSF  197 (223)
Q Consensus       118 ~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~  197 (223)
                      +..++.+.+.++ +|. ||...+  .....+|     .++.+++++.|++|++||++.   .+|...+.....+  ..+|
T Consensus        83 ryLsl~dNkylR-YF~-GH~~~V--~sL~~sP-----~~d~FlS~S~D~tvrLWDlR~---~~cqg~l~~~~~p--i~Af  148 (311)
T KOG1446|consen   83 RYLSLHDNKYLR-YFP-GHKKRV--NSLSVSP-----KDDTFLSSSLDKTVRLWDLRV---KKCQGLLNLSGRP--IAAF  148 (311)
T ss_pred             EEEEeecCceEE-EcC-CCCceE--EEEEecC-----CCCeEEecccCCeEEeeEecC---CCCceEEecCCCc--ceeE
Confidence            555666666666 675 999995  4447899     589999999999999999998   7777766644444  4789


Q ss_pred             ecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         198 NYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       198 ~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      .|+|-++|++...+.|+|||+|.-
T Consensus       149 Dp~GLifA~~~~~~~IkLyD~Rs~  172 (311)
T KOG1446|consen  149 DPEGLIFALANGSELIKLYDLRSF  172 (311)
T ss_pred             CCCCcEEEEecCCCeEEEEEeccc
Confidence            999999999998889999999873

>KOG0639|consensus

Probab=99.53  E-value=5.6e-14  Score=112.93  Aligned_cols=118  Identities=15%  Similarity=0.244  Sum_probs=96.5

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCce-EEeeeeeccccCcceeEEE-eeecCcccCCCcEEEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAV-QLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVT  161 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~-~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~s  161 (223)
                      +.-|.++...       +||+-|++|+...  .+.|||+.... .+...+. . ....  ..+ +.+|     |.++.++
T Consensus       465 dnyiRSckL~-------pdgrtLivGGeas--tlsiWDLAapTprikaelt-s-sapa--CyALa~sp-----DakvcFs  526 (705)
T KOG0639|consen  465 DNYIRSCKLL-------PDGRTLIVGGEAS--TLSIWDLAAPTPRIKAELT-S-SAPA--CYALAISP-----DAKVCFS  526 (705)
T ss_pred             ccceeeeEec-------CCCceEEeccccc--eeeeeeccCCCcchhhhcC-C-cchh--hhhhhcCC-----ccceeee
Confidence            5578888888       9999999999877  89999987542 2222211 1 1111  222 5788     8999999


Q ss_pred             ecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         162 GSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       162 gs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ++.||.|.|||+.+   ...+..|++|.+.+.||..+++|..|=||+-|++||.||++.++
T Consensus       527 ccsdGnI~vwDLhn---q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregr  584 (705)
T KOG0639|consen  527 CCSDGNIAVWDLHN---QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR  584 (705)
T ss_pred             eccCCcEEEEEccc---ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhh
Confidence            99999999999999   88999999999999999999999999999999999999999864

>KOG0294|consensus

Probab=99.53  E-value=5.4e-13  Score=101.64  Aligned_cols=125  Identities=16%  Similarity=0.281  Sum_probs=93.6

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccC---------cce-------
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKS---------SKY-------  141 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~---------~~~-------  141 (223)
                      .+..| ...|+.++.+       |.+.+-++.+.|+  .+++||+-.|+.-.. ...++..         ..+       
T Consensus       122 slK~H-~~~Vt~lsiH-------PS~KLALsVg~D~--~lr~WNLV~Gr~a~v-~~L~~~at~v~w~~~Gd~F~v~~~~~  190 (362)
T KOG0294|consen  122 SLKAH-KGQVTDLSIH-------PSGKLALSVGGDQ--VLRTWNLVRGRVAFV-LNLKNKATLVSWSPQGDHFVVSGRNK  190 (362)
T ss_pred             eeccc-ccccceeEec-------CCCceEEEEcCCc--eeeeehhhcCcccee-eccCCcceeeEEcCCCCEEEEEeccE
Confidence            66778 6669999999       9999988888888  899999866532111 1011110         000       


Q ss_pred             -----------------e--EEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEE--ecC
Q psy3599         142 -----------------Q--VRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSF--NYD  200 (223)
Q Consensus       142 -----------------~--i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~--~~~  200 (223)
                                       .  +.| ..+    -++..+++|..|+.|.+||...   ..++..+.+|+.+|-++.+  +|+
T Consensus       191 i~i~q~d~A~v~~~i~~~~r~l~-~~~----l~~~~L~vG~d~~~i~~~D~ds---~~~~~~~~AH~~RVK~i~~~~~~~  262 (362)
T KOG0294|consen  191 IDIYQLDNASVFREIENPKRILC-ATF----LDGSELLVGGDNEWISLKDTDS---DTPLTEFLAHENRVKDIASYTNPE  262 (362)
T ss_pred             EEEEecccHhHhhhhhcccccee-eee----cCCceEEEecCCceEEEeccCC---CccceeeecchhheeeeEEEecCC
Confidence                             0  111 011    1578999999999999999998   8899999999999999985  567


Q ss_pred             CCEEEEEeCCCcEEEeeCCCC
Q psy3599         201 ESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       201 ~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      +.+|+|+|.||.|++||++..
T Consensus       263 ~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  263 HEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ceEEEEeccCceEEEEEcccc
Confidence            889999999999999998764

>KOG1332|consensus

Probab=99.53  E-value=4e-13  Score=99.13  Aligned_cols=151  Identities=19%  Similarity=0.217  Sum_probs=116.0

Q ss_pred             ccCCcEEEEEECCCCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccc
Q psy3599          57 RSTGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNH  136 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h  136 (223)
                      ..++.|..+...+++.......+.+| .+||..++|.     .|.-|.+|++|+.|+  .+-||...++.-....-...|
T Consensus        30 sSD~tVkIf~v~~n~~s~ll~~L~Gh-~GPVwqv~wa-----hPk~G~iLAScsYDg--kVIiWke~~g~w~k~~e~~~h  101 (299)
T KOG1332|consen   30 SSDGTVKIFEVRNNGQSKLLAELTGH-SGPVWKVAWA-----HPKFGTILASCSYDG--KVIIWKEENGRWTKAYEHAAH  101 (299)
T ss_pred             cCCccEEEEEEcCCCCceeeeEecCC-CCCeeEEeec-----ccccCcEeeEeecCc--eEEEEecCCCchhhhhhhhhh
Confidence            56788888888887764444588999 9999999997     246899999999999  888999887743222111467


Q ss_pred             cCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecC---C-----------
Q psy3599         137 KSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD---E-----------  201 (223)
Q Consensus       137 ~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~---~-----------  201 (223)
                      ...   +.+ +|.|..   -+-.|++++.||.|.+.+.+..+.-..-....+|.-.|++++|.|-   |           
T Consensus       102 ~~S---VNsV~waphe---ygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~  175 (299)
T KOG1332|consen  102 SAS---VNSVAWAPHE---YGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKV  175 (299)
T ss_pred             ccc---ceeecccccc---cceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccc
Confidence            777   555 687731   4779999999999999999873112234455789999999999995   4           


Q ss_pred             CEEEEEeCCCcEEEeeCCCC
Q psy3599         202 SLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       202 ~~l~s~s~d~~i~iwd~~~~  221 (223)
                      ..|++|+.|+.|+||+...+
T Consensus       176 krlvSgGcDn~VkiW~~~~~  195 (299)
T KOG1332|consen  176 KRLVSGGCDNLVKIWKFDSD  195 (299)
T ss_pred             ceeeccCCccceeeeecCCc
Confidence            46999999999999997653

>KOG0278|consensus

Probab=99.52  E-value=2.7e-14  Score=105.62  Aligned_cols=146  Identities=16%  Similarity=0.354  Sum_probs=115.5

Q ss_pred             ccccccCCcEEEEEECCCCceeeee----------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEE
Q psy3599          53 NDQLRSTGVIVSILCDDLGRLSKGK----------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCI  116 (223)
Q Consensus        53 ~~~~~~~~~i~~~~~~~~~~~~~~~----------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (223)
                      ..|.+|.|.|.....+.+.-..++.                .....+...|.+++|+       .|..+|++|+.++  .
T Consensus        53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~-------~ds~~lltgg~ek--l  123 (334)
T KOG0278|consen   53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFS-------QDSNYLLTGGQEK--L  123 (334)
T ss_pred             EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEec-------ccchhhhccchHH--H
Confidence            4566899999988877643222111                2233447889999999       9999999999999  8


Q ss_pred             EEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEE
Q psy3599         117 LKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGV  195 (223)
Q Consensus       117 v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v  195 (223)
                      +|+||++...-....+. +|.+.   |+- .|+.     ..+.|++.+.|+.|++||.++   +..+.++. -+.+|+++
T Consensus       124 lrvfdln~p~App~E~~-ghtg~---Ir~v~wc~-----eD~~iLSSadd~tVRLWD~rT---gt~v~sL~-~~s~VtSl  190 (334)
T KOG0278|consen  124 LRVFDLNRPKAPPKEIS-GHTGG---IRTVLWCH-----EDKCILSSADDKTVRLWDHRT---GTEVQSLE-FNSPVTSL  190 (334)
T ss_pred             hhhhhccCCCCCchhhc-CCCCc---ceeEEEec-----cCceEEeeccCCceEEEEecc---CcEEEEEe-cCCCCcce
Confidence            99999987665555664 89888   555 7888     688899999999999999999   88888887 46779999


Q ss_pred             EEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         196 SFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       196 ~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      ..+++|.+|.++ ..+.|.+||..+.
T Consensus       191 Evs~dG~ilTia-~gssV~Fwdaksf  215 (334)
T KOG0278|consen  191 EVSQDGRILTIA-YGSSVKFWDAKSF  215 (334)
T ss_pred             eeccCCCEEEEe-cCceeEEeccccc
Confidence            999999987666 4678999998764

>KOG1407|consensus

Probab=99.51  E-value=4e-13  Score=99.94  Aligned_cols=134  Identities=16%  Similarity=0.276  Sum_probs=107.8

Q ss_pred             CcEEEEEECCCCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCc
Q psy3599          60 GVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSS  139 (223)
Q Consensus        60 ~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~  139 (223)
                      |.|..++|-.   +-....++.| .....||.|+       |+|++||+|+.|.  .+.+||++.-.+++.+  ..+. .
T Consensus       169 G~v~ILsyps---Lkpv~si~AH-~snCicI~f~-------p~GryfA~GsADA--lvSLWD~~ELiC~R~i--sRld-w  232 (313)
T KOG1407|consen  169 GCVEILSYPS---LKPVQSIKAH-PSNCICIEFD-------PDGRYFATGSADA--LVSLWDVDELICERCI--SRLD-W  232 (313)
T ss_pred             ceEEEEeccc---cccccccccC-CcceEEEEEC-------CCCceEeeccccc--eeeccChhHhhhheee--cccc-C
Confidence            5666666642   2222256777 7889999999       9999999999999  8999999987776643  2443 3


Q ss_pred             ceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCC--------
Q psy3599         140 KYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQ--------  210 (223)
Q Consensus       140 ~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d--------  210 (223)
                      +  |+. .|+.     +|.+|++||+|..|-|=++++   +..+..++ ++++...|+|+|...+||-++.|        
T Consensus       233 p--VRTlSFS~-----dg~~lASaSEDh~IDIA~vet---Gd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~re  301 (313)
T KOG1407|consen  233 P--VRTLSFSH-----DGRMLASASEDHFIDIAEVET---GDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNRE  301 (313)
T ss_pred             c--eEEEEecc-----CcceeeccCccceEEeEeccc---CCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccc
Confidence            3  777 8999     899999999999999999999   88888888 78889999999999999988744        


Q ss_pred             -CcEEEeeCCC
Q psy3599         211 -GLIILWSREK  220 (223)
Q Consensus       211 -~~i~iwd~~~  220 (223)
                       |.+++|-+.+
T Consensus       302 ag~vKiFG~~~  312 (313)
T KOG1407|consen  302 AGTVKIFGLSN  312 (313)
T ss_pred             cceeEEecCCC
Confidence             5688876543

>KOG0288|consensus

Probab=99.51  E-value=4.4e-13  Score=105.28  Aligned_cols=115  Identities=25%  Similarity=0.349  Sum_probs=90.4

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeee-ccccCcceeEEEeeecCcccCCCcEEEEe
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFN-VNHKSSKYQVRSTFCPIMSFREGACVVTG  162 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~-~~h~~~~~~i~~~~s~~~~~~~~~~l~sg  162 (223)
                      ++.|+++..+       .++..|.+++.|.  .+++.|+.+..... .+. .+........+..|||     ++.++++|
T Consensus       341 gg~vtSl~ls-------~~g~~lLsssRDd--tl~viDlRt~eI~~-~~sA~g~k~asDwtrvvfSp-----d~~YvaAG  405 (459)
T KOG0288|consen  341 GGRVTSLDLS-------MDGLELLSSSRDD--TLKVIDLRTKEIRQ-TFSAEGFKCASDWTRVVFSP-----DGSYVAAG  405 (459)
T ss_pred             CcceeeEeec-------cCCeEEeeecCCC--ceeeeecccccEEE-EeeccccccccccceeEECC-----CCceeeec
Confidence            5689999999       9999999888777  78888888765443 332 1111111114447999     89999999


Q ss_pred             cCCCcEEEEEcccCcccccceeeccccc--CEEEEEEecCCCEEEEEeCCCcEEEe
Q psy3599         163 SEDSCVYFLDIQSKEHKNAVNKLQGHAC--PVLGVSFNYDESLLATSDYQGLIILW  216 (223)
Q Consensus       163 s~dg~v~iwd~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~~l~s~s~d~~i~iw  216 (223)
                      |.||.|+||++.+   +++...++....  .|++++|+|.|..+++++.++.+++|
T Consensus       406 S~dgsv~iW~v~t---gKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  406 SADGSVYIWSVFT---GKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             cCCCcEEEEEccC---ceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            9999999999999   888777765433  59999999999999999999999999

>KOG0296|consensus

Probab=99.49  E-value=1.3e-12  Score=101.22  Aligned_cols=121  Identities=13%  Similarity=0.191  Sum_probs=102.7

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCc
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGA  157 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~  157 (223)
                      .+..| ..+|.+++.+       |+..++++|+.|.  .-.+|+..++..+.. + .+|...+  +.+.|+.     ++.
T Consensus        59 tF~~H-~~svFavsl~-------P~~~l~aTGGgDD--~AflW~~~~ge~~~e-l-tgHKDSV--t~~~Fsh-----dgt  119 (399)
T KOG0296|consen   59 TFDKH-TDSVFAVSLH-------PNNNLVATGGGDD--LAFLWDISTGEFAGE-L-TGHKDSV--TCCSFSH-----DGT  119 (399)
T ss_pred             ehhhc-CCceEEEEeC-------CCCceEEecCCCc--eEEEEEccCCcceeE-e-cCCCCce--EEEEEcc-----Cce
Confidence            45667 9999999999       8999999999877  788999999985554 3 5999994  4448999     899


Q ss_pred             EEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         158 CVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       158 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      +|+||..+|.|.||+..+   +....++...-..+.=+.|+|.+.+|+.|+.||.+.+|.+.+
T Consensus       120 lLATGdmsG~v~v~~~st---g~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~  179 (399)
T KOG0296|consen  120 LLATGDMSGKVLVFKVST---GGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS  179 (399)
T ss_pred             EEEecCCCccEEEEEccc---CceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCC
Confidence            999999999999999999   777777754445567789999999999999999999999876

>KOG0288|consensus

Probab=99.49  E-value=2.6e-13  Score=106.53  Aligned_cols=153  Identities=21%  Similarity=0.227  Sum_probs=102.5

Q ss_pred             cccccccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCC
Q psy3599          52 RNDQLRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANA  113 (223)
Q Consensus        52 ~~~~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~  113 (223)
                      .....+..|.|..+.|+++++.....                  .+.+| .+.|+++.|.       .....+++++.|.
T Consensus       212 ~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGH-tdkVt~ak~~-------~~~~~vVsgs~DR  283 (459)
T KOG0288|consen  212 ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGH-TDKVTAAKFK-------LSHSRVVSGSADR  283 (459)
T ss_pred             hhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhccc-ccceeeehhh-------ccccceeeccccc
Confidence            34444777888888888865543221                  56777 9999999998       6655588999888


Q ss_pred             eEEEEEecCCCceEEeeeee---------------ccccCcce------------------eEEE-eeecCcccCCCcEE
Q psy3599         114 VCILKVLDKEGAVQLKRKFN---------------VNHKSSKY------------------QVRS-TFCPIMSFREGACV  159 (223)
Q Consensus       114 ~~~v~i~d~~~~~~~~~~~~---------------~~h~~~~~------------------~i~~-~~s~~~~~~~~~~l  159 (223)
                        ++++||+....+..+.++               .||.....                  .+++ ..++     ++..+
T Consensus       284 --tiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~-----~g~~l  356 (459)
T KOG0288|consen  284 --TIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSM-----DGLEL  356 (459)
T ss_pred             --hhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeecc-----CCeEE
Confidence              899999987766665443               12322210                  0111 2222     45555


Q ss_pred             EEecCCCcEEEEEcccCcccccceeecc----cccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         160 VTGSEDSCVYFLDIQSKEHKNAVNKLQG----HACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       160 ~sgs~dg~v~iwd~~~~~~~~~~~~~~~----h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+++-|..+.+.|+++   .+....+.+    .....+.+.|+|++.++++||.||.|+||++.+++
T Consensus       357 LsssRDdtl~viDlRt---~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK  420 (459)
T KOG0288|consen  357 LSSSRDDTLKVIDLRT---KEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGK  420 (459)
T ss_pred             eeecCCCceeeeeccc---ccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCce
Confidence            6666666666666666   444333321    11237889999999999999999999999998875

>KOG1007|consensus

Probab=99.47  E-value=9.3e-13  Score=99.41  Aligned_cols=116  Identities=22%  Similarity=0.293  Sum_probs=91.5

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecC
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSE  164 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~  164 (223)
                      ..++-+|+|+     .++..+++.++..   +..||..+..+...+- ..|...   ++. .|+|.    ...+|++|+.
T Consensus       172 ~ftsg~WspH-----Hdgnqv~tt~d~t---l~~~D~RT~~~~~sI~-dAHgq~---vrdlDfNpn----kq~~lvt~gD  235 (370)
T KOG1007|consen  172 SFTSGAWSPH-----HDGNQVATTSDST---LQFWDLRTMKKNNSIE-DAHGQR---VRDLDFNPN----KQHILVTCGD  235 (370)
T ss_pred             eecccccCCC-----CccceEEEeCCCc---EEEEEccchhhhcchh-hhhcce---eeeccCCCC----ceEEEEEcCC
Confidence            4555667633     6889999987765   6677877665555433 367666   555 89985    5678999999


Q ss_pred             CCcEEEEEcccCcccccceeecccccCEEEEEEecC-CCEEEEEeCCCcEEEeeCC
Q psy3599         165 DSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD-ESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       165 dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~  219 (223)
                      ||.|++||.+..  ..++..+.+|...|++|.|+|. .++++|||.|..|.+|...
T Consensus       236 dgyvriWD~R~t--k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  236 DGYVRIWDTRKT--KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS  289 (370)
T ss_pred             CccEEEEeccCC--CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence            999999999972  6789999999999999999996 7788999999999999754

>KOG0299|consensus

Probab=99.46  E-value=1.3e-12  Score=103.76  Aligned_cols=114  Identities=20%  Similarity=0.230  Sum_probs=93.7

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS  163 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs  163 (223)
                      ...+.+++.+       +|+.+|++++.|.  .+.||+..+...+.. | .+|.+.+  ...+|--     ...-+++++
T Consensus       202 ~keil~~avS-------~Dgkylatgg~d~--~v~Iw~~~t~ehv~~-~-~ghr~~V--~~L~fr~-----gt~~lys~s  263 (479)
T KOG0299|consen  202 VKEILTLAVS-------SDGKYLATGGRDR--HVQIWDCDTLEHVKV-F-KGHRGAV--SSLAFRK-----GTSELYSAS  263 (479)
T ss_pred             cceeEEEEEc-------CCCcEEEecCCCc--eEEEecCcccchhhc-c-cccccce--eeeeeec-----Cccceeeee
Confidence            6678899999       9999999999999  899999999987775 4 4999995  4447766     577899999


Q ss_pred             CCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeC
Q psy3599         164 EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       164 ~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      .|.+|++|+++.   ...+.++.+|.+.|..+.-...+..+-.|+-|+++++|++
T Consensus       264 ~Drsvkvw~~~~---~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi  315 (479)
T KOG0299|consen  264 ADRSVKVWSIDQ---LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKI  315 (479)
T ss_pred             cCCceEEEehhH---hHHHHHHhCCccceeeechhcccceEEeccccceeEEEec
Confidence            999999999998   8888999999888877766655665555557777777776

>KOG1036|consensus

Probab=99.46  E-value=1.2e-12  Score=99.45  Aligned_cols=113  Identities=16%  Similarity=0.294  Sum_probs=93.2

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS  163 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs  163 (223)
                      ...|+++.|+       +.+..|+.++-|+  .+++|+........ .  ..|....  +.|+|.+      ...+++|+
T Consensus        13 ~d~IS~v~f~-------~~~~~LLvssWDg--slrlYdv~~~~l~~-~--~~~~~pl--L~c~F~d------~~~~~~G~   72 (323)
T KOG1036|consen   13 EDGISSVKFS-------PSSSDLLVSSWDG--SLRLYDVPANSLKL-K--FKHGAPL--LDCAFAD------ESTIVTGG   72 (323)
T ss_pred             hhceeeEEEc-------CcCCcEEEEeccC--cEEEEeccchhhhh-h--eecCCce--eeeeccC------CceEEEec
Confidence            5689999999       7777777777888  89999988764333 2  4677775  7778876      78899999


Q ss_pred             CCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         164 EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       164 ~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      .||.|+.+|+.+   ++ ...+..|..+|.|+.+++....+++||.|++|++||.+.
T Consensus        73 ~dg~vr~~Dln~---~~-~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~  125 (323)
T KOG1036|consen   73 LDGQVRRYDLNT---GN-EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN  125 (323)
T ss_pred             cCceEEEEEecC---Cc-ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc
Confidence            999999999998   54 345566999999999999999999999999999999984

>KOG2096|consensus

Probab=99.45  E-value=4.3e-12  Score=97.10  Aligned_cols=107  Identities=16%  Similarity=0.274  Sum_probs=84.0

Q ss_pred             CCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCccc-
Q psy3599         101 RDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHK-  179 (223)
Q Consensus       101 ~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~-  179 (223)
                      ..+.+|.+++.|.  .|.+|+++ |+.+... . ......  ..++.+|     +|.++++++--.-|++|.+--...+ 
T Consensus       197 ~~~k~imsas~dt--~i~lw~lk-Gq~L~~i-d-tnq~~n--~~aavSP-----~GRFia~~gFTpDVkVwE~~f~kdG~  264 (420)
T KOG2096|consen  197 GNAKYIMSASLDT--KICLWDLK-GQLLQSI-D-TNQSSN--YDAAVSP-----DGRFIAVSGFTPDVKVWEPIFTKDGT  264 (420)
T ss_pred             CCceEEEEecCCC--cEEEEecC-Cceeeee-c-cccccc--cceeeCC-----CCcEEEEecCCCCceEEEEEeccCcc
Confidence            6678999999998  89999998 6555542 1 222221  4457899     7999999999889999997431112 


Q ss_pred             ----ccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         180 ----NAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       180 ----~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                          ..+..+++|...|...+|+++...++|.|.||+.+|||..
T Consensus       265 fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  265 FQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             hhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence                2456789999999999999999999999999999999964

>KOG0321|consensus

Probab=99.45  E-value=8.7e-13  Score=108.66  Aligned_cols=126  Identities=23%  Similarity=0.388  Sum_probs=99.6

Q ss_pred             eeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCc
Q psy3599          79 LVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGA  157 (223)
Q Consensus        79 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~  157 (223)
                      +..| ...|.++.|.       |...+|++++.|.  ++++||+++..........||...   +++ +|.|+    +..
T Consensus        96 ~~aH-~nAifDl~wa-------pge~~lVsasGDs--T~r~Wdvk~s~l~G~~~~~GH~~S---vkS~cf~~~----n~~  158 (720)
T KOG0321|consen   96 PLAH-KNAIFDLKWA-------PGESLLVSASGDS--TIRPWDVKTSRLVGGRLNLGHTGS---VKSECFMPT----NPA  158 (720)
T ss_pred             cccc-cceeEeeccC-------CCceeEEEccCCc--eeeeeeeccceeecceeecccccc---cchhhhccC----CCc
Confidence            4556 8899999999       7677888999888  999999998877765333699988   777 89997    899


Q ss_pred             EEEEecCCCcEEEEEcccCc---------------cc---------ccceeecccccCEEE---EEEecCCCEEEEEeC-
Q psy3599         158 CVVTGSEDSCVYFLDIQSKE---------------HK---------NAVNKLQGHACPVLG---VSFNYDESLLATSDY-  209 (223)
Q Consensus       158 ~l~sgs~dg~v~iwd~~~~~---------------~~---------~~~~~~~~h~~~v~~---v~~~~~~~~l~s~s~-  209 (223)
                      .+++|+.||.|.|||++-..               +.         +-+.+.++|...|.+   +.+..|...||++|. 
T Consensus       159 vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~  238 (720)
T KOG0321|consen  159 VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAA  238 (720)
T ss_pred             ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCC
Confidence            99999999999999986421               00         112233566666666   777788999999987 


Q ss_pred             CCcEEEeeCCCC
Q psy3599         210 QGLIILWSREKH  221 (223)
Q Consensus       210 d~~i~iwd~~~~  221 (223)
                      |+.|++||+++.
T Consensus       239 D~~iKVWDLRk~  250 (720)
T KOG0321|consen  239 DSTIKVWDLRKN  250 (720)
T ss_pred             CcceEEEeeccc
Confidence            999999999874

>KOG1274|consensus

Probab=99.45  E-value=3.4e-12  Score=108.93  Aligned_cols=125  Identities=18%  Similarity=0.271  Sum_probs=96.8

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeecc----ccCcceeEEEeeecCccc
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVN----HKSSKYQVRSTFCPIMSF  153 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~----h~~~~~~i~~~~s~~~~~  153 (223)
                      .+..| +.+|.++.|+       |.+.+||+.+-++  .+.+|++.++......-...    -.....+.+.+|+|    
T Consensus       133 ~lrgh-~apVl~l~~~-------p~~~fLAvss~dG--~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P----  198 (933)
T KOG1274|consen  133 VLRGH-DAPVLQLSYD-------PKGNFLAVSSCDG--KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP----  198 (933)
T ss_pred             eeccc-CCceeeeeEc-------CCCCEEEEEecCc--eEEEEEcccchhhhhcccCCccccccccceeeeeeecC----
Confidence            55667 8999999999       9999999999889  89999999875443211101    11112113338999    


Q ss_pred             CCCcEEEEecCCCcEEEEEcccCcccccceeecc--cccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         154 REGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQG--HACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       154 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                       ++..++.-+.|+.|++|+...   .+...++..  +...+.++.|+|+|.+||+++.||.|.|||..+
T Consensus       199 -k~g~la~~~~d~~Vkvy~r~~---we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  199 -KGGTLAVPPVDNTVKVYSRKG---WELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             -CCCeEEeeccCCeEEEEccCC---ceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence             666777778899999999998   777777643  445599999999999999999999999999984

>KOG0647|consensus

Probab=99.44  E-value=5.1e-12  Score=95.87  Aligned_cols=138  Identities=20%  Similarity=0.251  Sum_probs=102.1

Q ss_pred             CCcEEEEEECCCCceeeee--------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEee
Q psy3599          59 TGVIVSILCDDLGRLSKGK--------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKR  130 (223)
Q Consensus        59 ~~~i~~~~~~~~~~~~~~~--------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~  130 (223)
                      .+.+.+.+||.+.+++...        ....+ .++|.+++|+       .||..+++++-|+  .+++||+.+++... 
T Consensus        40 ~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~-~~PvL~v~Ws-------ddgskVf~g~~Dk--~~k~wDL~S~Q~~~-  108 (347)
T KOG0647|consen   40 DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSH-DGPVLDVCWS-------DDGSKVFSGGCDK--QAKLWDLASGQVSQ-  108 (347)
T ss_pred             CceEEecccCCceEEEEEecCCcccchhhhcc-CCCeEEEEEc-------cCCceEEeeccCC--ceEEEEccCCCeee-
Confidence            3444455666555554332        22334 8999999999       9999999999888  89999999995443 


Q ss_pred             eeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeC
Q psy3599         131 KFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDY  209 (223)
Q Consensus       131 ~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~  209 (223)
                      .  ..|...   +++ .|-+.+   .-..|+|||.|.+++.||.+.   ..++..+.- .+.+.++..  ...+++.+..
T Consensus       109 v--~~Hd~p---vkt~~wv~~~---~~~cl~TGSWDKTlKfWD~R~---~~pv~t~~L-PeRvYa~Dv--~~pm~vVata  174 (347)
T KOG0647|consen  109 V--AAHDAP---VKTCHWVPGM---NYQCLVTGSWDKTLKFWDTRS---SNPVATLQL-PERVYAADV--LYPMAVVATA  174 (347)
T ss_pred             e--eecccc---eeEEEEecCC---CcceeEecccccceeecccCC---CCeeeeeec-cceeeehhc--cCceeEEEec
Confidence            2  478777   554 565521   235899999999999999998   788888774 455766654  4567888888


Q ss_pred             CCcEEEeeCCCC
Q psy3599         210 QGLIILWSREKH  221 (223)
Q Consensus       210 d~~i~iwd~~~~  221 (223)
                      ++.|.+|+++.+
T Consensus       175 ~r~i~vynL~n~  186 (347)
T KOG0647|consen  175 ERHIAVYNLENP  186 (347)
T ss_pred             CCcEEEEEcCCC
Confidence            999999999765

>KOG0300|consensus

Probab=99.43  E-value=3.5e-12  Score=97.62  Aligned_cols=139  Identities=20%  Similarity=0.258  Sum_probs=107.7

Q ss_pred             CCcEEEEEECCCCceeeee------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeee
Q psy3599          59 TGVIVSILCDDLGRLSKGK------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKF  132 (223)
Q Consensus        59 ~~~i~~~~~~~~~~~~~~~------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~  132 (223)
                      ...+...+||.+..++...      .+.+| +..++.++-+       |..+++++++.|.  ++++||+.........|
T Consensus       284 g~Q~vTaSWDRTAnlwDVEtge~v~~LtGH-d~ELtHcstH-------ptQrLVvTsSrDt--TFRLWDFReaI~sV~VF  353 (481)
T KOG0300|consen  284 GQQMVTASWDRTANLWDVETGEVVNILTGH-DSELTHCSTH-------PTQRLVVTSSRDT--TFRLWDFREAIQSVAVF  353 (481)
T ss_pred             cceeeeeeccccceeeeeccCceeccccCc-chhccccccC-------CcceEEEEeccCc--eeEeccchhhcceeeee
Confidence            3344555666655555332      56677 7788888877       8889999999999  99999998665555566


Q ss_pred             eccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCC
Q psy3599         133 NVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG  211 (223)
Q Consensus       133 ~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~  211 (223)
                       +||...   +++ .|..      +..+++|+.|.+|++||+++-  ..++.++. -.++++.++.+..+.+++.--.+.
T Consensus       354 -QGHtdt---VTS~vF~~------dd~vVSgSDDrTvKvWdLrNM--RsplATIR-tdS~~NRvavs~g~~iIAiPhDNR  420 (481)
T KOG0300|consen  354 -QGHTDT---VTSVVFNT------DDRVVSGSDDRTVKVWDLRNM--RSPLATIR-TDSPANRVAVSKGHPIIAIPHDNR  420 (481)
T ss_pred             -cccccc---eeEEEEec------CCceeecCCCceEEEeeeccc--cCcceeee-cCCccceeEeecCCceEEeccCCc
Confidence             599998   666 7875      788999999999999999971  34667776 467899999998888888888888


Q ss_pred             cEEEeeCCC
Q psy3599         212 LIILWSREK  220 (223)
Q Consensus       212 ~i~iwd~~~  220 (223)
                      .|++||+..
T Consensus       421 qvRlfDlnG  429 (481)
T KOG0300|consen  421 QVRLFDLNG  429 (481)
T ss_pred             eEEEEecCC
Confidence            999999864

>KOG0299|consensus

Probab=99.43  E-value=2.4e-12  Score=102.36  Aligned_cols=142  Identities=18%  Similarity=0.276  Sum_probs=114.0

Q ss_pred             ccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK  118 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~  118 (223)
                      +|...|.++..+++|+++.+.                  .+.+| .++|.+++|-       .....+.+++.|.  .++
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~gh-r~~V~~L~fr-------~gt~~lys~s~Dr--svk  269 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGH-RGAVSSLAFR-------KGTSELYSASADR--SVK  269 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccccc-ccceeeeeee-------cCccceeeeecCC--ceE
Confidence            678899999999999988665                  34556 8899999998       7777888888888  899


Q ss_pred             EecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEE
Q psy3599         119 VLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSF  197 (223)
Q Consensus       119 i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~  197 (223)
                      +|+.+....+.+.  .||...+  +.. +.+      .+..+..|+.|.++++|++..    +....+.+|.+.+-|++|
T Consensus       270 vw~~~~~s~vetl--yGHqd~v--~~IdaL~------reR~vtVGgrDrT~rlwKi~e----esqlifrg~~~sidcv~~  335 (479)
T KOG0299|consen  270 VWSIDQLSYVETL--YGHQDGV--LGIDALS------RERCVTVGGRDRTVRLWKIPE----ESQLIFRGGEGSIDCVAF  335 (479)
T ss_pred             EEehhHhHHHHHH--hCCccce--eeechhc------ccceEEeccccceeEEEeccc----cceeeeeCCCCCeeeEEE
Confidence            9999876655544  4999986  433 333      377788888999999999955    455667788889999998


Q ss_pred             ecCCCEEEEEeCCCcEEEeeCCCCCC
Q psy3599         198 NYDESLLATSDYQGLIILWSREKHEP  223 (223)
Q Consensus       198 ~~~~~~l~s~s~d~~i~iwd~~~~~~  223 (223)
                      -.+ ..|+|||.+|.|.+|++.+.+|
T Consensus       336 In~-~HfvsGSdnG~IaLWs~~KKkp  360 (479)
T KOG0299|consen  336 IND-EHFVSGSDNGSIALWSLLKKKP  360 (479)
T ss_pred             ecc-cceeeccCCceEEEeeecccCc
Confidence            754 4589999999999999988775

>KOG1408|consensus

Probab=99.43  E-value=3.9e-12  Score=106.41  Aligned_cols=119  Identities=22%  Similarity=0.373  Sum_probs=102.9

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS  163 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs  163 (223)
                      ...+++++..       |...++++++.|.  .|+||+.+++++.+. |+..|......|+....|     .+.++++.+
T Consensus       596 ktTlYDm~Vd-------p~~k~v~t~cQDr--nirif~i~sgKq~k~-FKgs~~~eG~lIKv~lDP-----SgiY~atSc  660 (1080)
T KOG1408|consen  596 KTTLYDMAVD-------PTSKLVVTVCQDR--NIRIFDIESGKQVKS-FKGSRDHEGDLIKVILDP-----SGIYLATSC  660 (1080)
T ss_pred             cceEEEeeeC-------CCcceEEEEeccc--ceEEEeccccceeee-ecccccCCCceEEEEECC-----CccEEEEee
Confidence            4578899998       8899999999998  899999999987774 432333323337778889     699999999


Q ss_pred             CCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         164 EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       164 ~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      .|..+.++|+-+   ++|+....+|...|+.+.|.+|...|++.+.||.|.+|.+..
T Consensus       661 sdktl~~~Df~s---gEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  661 SDKTLCFVDFVS---GECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             cCCceEEEEecc---chhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            999999999999   999999999999999999999999999999999999998753

>KOG0646|consensus

Probab=99.43  E-value=1.9e-12  Score=103.09  Aligned_cols=120  Identities=17%  Similarity=0.251  Sum_probs=100.6

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEe
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTG  162 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sg  162 (223)
                      .++|.++.-+       |+|.+|+.+.-.+  .+.+|.+++|..+. .+ .+|-..   ++| .|+-     |+.+|+||
T Consensus        81 Pg~v~al~s~-------n~G~~l~ag~i~g--~lYlWelssG~LL~-v~-~aHYQ~---ITcL~fs~-----dgs~iiTg  141 (476)
T KOG0646|consen   81 PGPVHALASS-------NLGYFLLAGTISG--NLYLWELSSGILLN-VL-SAHYQS---ITCLKFSD-----DGSHIITG  141 (476)
T ss_pred             ccceeeeecC-------CCceEEEeecccC--cEEEEEeccccHHH-HH-Hhhccc---eeEEEEeC-----CCcEEEec
Confidence            6789999999       9999999987666  68899999997665 44 488888   777 8998     89999999


Q ss_pred             cCCCcEEEEEcccC------cccccceeecccccCEEEEEEecC--CCEEEEEeCCCcEEEeeCCCCC
Q psy3599         163 SEDSCVYFLDIQSK------EHKNAVNKLQGHACPVLGVSFNYD--ESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       163 s~dg~v~iwd~~~~------~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      |.||.|.+|.+..-      ...++++.+..|.-+|+++...+.  ...++|+|.|.++|+||+..+.
T Consensus       142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~  209 (476)
T KOG0646|consen  142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV  209 (476)
T ss_pred             CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce
Confidence            99999999987430      124678899999999999998765  4579999999999999998764

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.43  E-value=2.5e-11  Score=90.12  Aligned_cols=115  Identities=19%  Similarity=0.365  Sum_probs=84.2

Q ss_pred             eeecCCCCeeEEEEeecccccCCCCeEEEEEe--CCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCC
Q psy3599          79 LVLSQDCPITCLSWRSWISREARDPTLLVNIA--ANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREG  156 (223)
Q Consensus        79 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~--~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~  156 (223)
                      +.....++|.+++|+       |++..|+...  .+.  .+.+||.+ +..+.. +  + ....  -...|+|     +|
T Consensus        54 i~l~~~~~I~~~~Ws-------P~g~~favi~g~~~~--~v~lyd~~-~~~i~~-~--~-~~~~--n~i~wsP-----~G  112 (194)
T PF08662_consen   54 IELKKEGPIHDVAWS-------PNGNEFAVIYGSMPA--KVTLYDVK-GKKIFS-F--G-TQPR--NTISWSP-----DG  112 (194)
T ss_pred             eeccCCCceEEEEEC-------cCCCEEEEEEccCCc--ccEEEcCc-ccEeEe-e--c-CCCc--eEEEECC-----CC
Confidence            334335679999999       8888776543  445  78999997 334432 2  2 2232  2236999     79


Q ss_pred             cEEEEecCC---CcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEe------CCCcEEEeeCC
Q psy3599         157 ACVVTGSED---SCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSD------YQGLIILWSRE  219 (223)
Q Consensus       157 ~~l~sgs~d---g~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s------~d~~i~iwd~~  219 (223)
                      .++++|+.+   |.+.+||.++   .+.+.+.+ |. .+..++|+|+|.+|++++      .|+.++||+..
T Consensus       113 ~~l~~~g~~n~~G~l~~wd~~~---~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  113 RFLVLAGFGNLNGDLEFWDVRK---KKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             CEEEEEEccCCCcEEEEEECCC---CEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            999988754   6799999998   88887776 33 378999999999999987      47889999974

>KOG1539|consensus

Probab=99.41  E-value=2.4e-12  Score=108.92  Aligned_cols=138  Identities=24%  Similarity=0.372  Sum_probs=112.5

Q ss_pred             ccCCcEEEEEECCCCceeeeee-------e---------eecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEe
Q psy3599          57 RSTGVIVSILCDDLGRLSKGKR-------L---------VLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVL  120 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~~-------~---------~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~  120 (223)
                      .|++.|..++.|..++++.+..       +         ....+.++.++.++       ....+++.+.++.  .|+++
T Consensus       491 ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~h-------r~s~l~a~~~ddf--~I~vv  561 (910)
T KOG1539|consen  491 AHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYH-------RVSDLLAIALDDF--SIRVV  561 (910)
T ss_pred             cccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeee-------ehhhhhhhhcCce--eEEEE
Confidence            5788899999988776654431       1         11124577788888       8888999888888  89999


Q ss_pred             cCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEec
Q psy3599         121 DKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNY  199 (223)
Q Consensus       121 d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~  199 (223)
                      |..+...++. | -||.+.   ++. +|||     +|.+|++++.|++|++||+.+   +.++-.+. -..++.++.|+|
T Consensus       562 D~~t~kvvR~-f-~gh~nr---itd~~FS~-----DgrWlisasmD~tIr~wDlpt---~~lID~~~-vd~~~~sls~SP  627 (910)
T KOG1539|consen  562 DVVTRKVVRE-F-WGHGNR---ITDMTFSP-----DGRWLISASMDSTIRTWDLPT---GTLIDGLL-VDSPCTSLSFSP  627 (910)
T ss_pred             EchhhhhhHH-h-hccccc---eeeeEeCC-----CCcEEEEeecCCcEEEEeccC---cceeeeEe-cCCcceeeEECC
Confidence            9988876664 5 499999   776 8999     899999999999999999999   88877765 466789999999


Q ss_pred             CCCEEEEEeCC-CcEEEee
Q psy3599         200 DESLLATSDYQ-GLIILWS  217 (223)
Q Consensus       200 ~~~~l~s~s~d-~~i~iwd  217 (223)
                      +|.+|||+..| .-|++|-
T Consensus       628 ngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  628 NGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             CCCEEEEEEecCceEEEEE
Confidence            99999999988 6699995

>KOG1036|consensus

Probab=99.41  E-value=2.2e-11  Score=92.62  Aligned_cols=137  Identities=16%  Similarity=0.227  Sum_probs=100.3

Q ss_pred             cCCcEEEEEECCCCceeeee----eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeee
Q psy3599          58 STGVIVSILCDDLGRLSKGK----RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFN  133 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~  133 (223)
                      ..+.....+||.+-++....    .....++.++.+++|.       + ...+++|+.++  .++.+|++++....-   
T Consensus        24 ~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~-------d-~~~~~~G~~dg--~vr~~Dln~~~~~~i---   90 (323)
T KOG1036|consen   24 SSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFA-------D-ESTIVTGGLDG--QVRRYDLNTGNEDQI---   90 (323)
T ss_pred             cCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeecc-------C-CceEEEeccCc--eEEEEEecCCcceee---
Confidence            34455555565544433222    2334458999999997       4 56677888888  899999998864432   


Q ss_pred             ccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCc
Q psy3599         134 VNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGL  212 (223)
Q Consensus       134 ~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~  212 (223)
                      ..|...   ++| .+++     ....+++||.|++|++||.+.   ......+.. ...|.++..  .++.|+.|+.|..
T Consensus        91 gth~~~---i~ci~~~~-----~~~~vIsgsWD~~ik~wD~R~---~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~  156 (323)
T KOG1036|consen   91 GTHDEG---IRCIEYSY-----EVGCVISGSWDKTIKFWDPRN---KVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRK  156 (323)
T ss_pred             ccCCCc---eEEEEeec-----cCCeEEEcccCccEEEEeccc---ccccccccc-CceEEEEec--cCCEEEEeecCce
Confidence            356555   777 7888     588999999999999999997   556666654 336877765  6889999999999


Q ss_pred             EEEeeCCCC
Q psy3599         213 IILWSREKH  221 (223)
Q Consensus       213 i~iwd~~~~  221 (223)
                      +.+||+|+.
T Consensus       157 v~iyDLRn~  165 (323)
T KOG1036|consen  157 VLIYDLRNL  165 (323)
T ss_pred             EEEEEcccc
Confidence            999999974

>KOG0270|consensus

Probab=99.41  E-value=2.8e-12  Score=101.59  Aligned_cols=124  Identities=14%  Similarity=0.192  Sum_probs=92.4

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeee-------------------ccccCcceeEEEe
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFN-------------------VNHKSSKYQVRST  146 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~-------------------~~h~~~~~~i~~~  146 (223)
                      ...|+.|..+-......|+++|.|..+.  .|.|||+.-...+...+.                   .+|+..+  +...
T Consensus       175 fPLC~ewld~~~~~~~~gNyvAiGtmdp--~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdav--l~Ls  250 (463)
T KOG0270|consen  175 FPLCIEWLDHGSKSGGAGNYVAIGTMDP--EIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAV--LALS  250 (463)
T ss_pred             cchhhhhhhcCCCCCCCcceEEEeccCc--eeEEeccccccccccceeechhhhhhhhhhcccccccccchHHH--HHHH
Confidence            3456777633222335578999999999  899999862211111111                   2455553  2224


Q ss_pred             eecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecC-CCEEEEEeCCCcEEEeeCCC
Q psy3599         147 FCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD-ESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       147 ~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~  220 (223)
                      |+..    ..+.|+|||.|.+|++||+.+   ++|..++..|...|.++.|+|. ...|++||.|++|.+.|+|.
T Consensus       251 ~n~~----~~nVLaSgsaD~TV~lWD~~~---g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~  318 (463)
T KOG0270|consen  251 WNRN----FRNVLASGSADKTVKLWDVDT---GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD  318 (463)
T ss_pred             hccc----cceeEEecCCCceEEEEEcCC---CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence            4443    478999999999999999999   9999999999999999999996 77899999999999999984

>KOG1539|consensus

Probab=99.40  E-value=4.8e-12  Score=107.13  Aligned_cols=139  Identities=17%  Similarity=0.221  Sum_probs=110.6

Q ss_pred             CcEEEEEECCCCceeeee------------------ee---eecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEE
Q psy3599          60 GVIVSILCDDLGRLSKGK------------------RL---VLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK  118 (223)
Q Consensus        60 ~~i~~~~~~~~~~~~~~~------------------~~---~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~  118 (223)
                      ..+.++..+..|++...+                  .+   ..| +.+|+.++..       .-++.+++++.++  .++
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah-~~~V~gla~D-------~~n~~~vsa~~~G--ilk  518 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH-KGEVTGLAVD-------GTNRLLVSAGADG--ILK  518 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccc-cCceeEEEec-------CCCceEEEccCcc--eEE
Confidence            556666666666654332                  22   345 8899999998       8888999999999  799


Q ss_pred             EecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEE
Q psy3599         119 VLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSF  197 (223)
Q Consensus       119 i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~  197 (223)
                      .||.+....+. .+..++.     +.+ .++.     ...+++.+..|-.|.++|..+   ...+..+.+|...|++++|
T Consensus       519 fw~f~~k~l~~-~l~l~~~-----~~~iv~hr-----~s~l~a~~~ddf~I~vvD~~t---~kvvR~f~gh~nritd~~F  584 (910)
T KOG1539|consen  519 FWDFKKKVLKK-SLRLGSS-----ITGIVYHR-----VSDLLAIALDDFSIRVVDVVT---RKVVREFWGHGNRITDMTF  584 (910)
T ss_pred             EEecCCcceee-eeccCCC-----cceeeeee-----hhhhhhhhcCceeEEEEEchh---hhhhHHhhccccceeeeEe
Confidence            99998775333 3333433     333 3444     578889999999999999999   8999999999999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         198 NYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       198 ~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +|+|..|++++.|++|++||+.++.
T Consensus       585 S~DgrWlisasmD~tIr~wDlpt~~  609 (910)
T KOG1539|consen  585 SPDGRWLISASMDSTIRTWDLPTGT  609 (910)
T ss_pred             CCCCcEEEEeecCCcEEEEeccCcc
Confidence            9999999999999999999998764

>KOG1273|consensus

Probab=99.40  E-value=1.9e-11  Score=93.46  Aligned_cols=129  Identities=20%  Similarity=0.240  Sum_probs=95.9

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeee-e------c--cccCccee------
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKF-N------V--NHKSSKYQ------  142 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~-~------~--~h~~~~~~------  142 (223)
                      .+.+| ..+|++++|+       ++|++|+++|.|.  .+.+||+..|..+.... .      .  .+......      
T Consensus        60 ~lsaH-~~pi~sl~WS-------~dgr~LltsS~D~--si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~  129 (405)
T KOG1273|consen   60 MLSAH-VRPITSLCWS-------RDGRKLLTSSRDW--SIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEE  129 (405)
T ss_pred             hhhcc-ccceeEEEec-------CCCCEeeeecCCc--eeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecC
Confidence            45567 8999999999       9999999999888  89999988775443311 0      0  01000000      


Q ss_pred             --EEEeeecC--------------------cccCCCcEEEEecCCCcEEEEEcccCcccccceeecccc-cCEEEEEEec
Q psy3599         143 --VRSTFCPI--------------------MSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHA-CPVLGVSFNY  199 (223)
Q Consensus       143 --i~~~~s~~--------------------~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~~~  199 (223)
                        +-..|++.                    ...+.|+++++|...|.+.++|..+   .+++..++.-. ..|..+.++.
T Consensus       130 sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t---~e~vas~rits~~~IK~I~~s~  206 (405)
T KOG1273|consen  130 SPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET---LECVASFRITSVQAIKQIIVSR  206 (405)
T ss_pred             CcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch---heeeeeeeechheeeeEEEEec
Confidence              00011100                    0113689999999999999999999   89999888655 6899999999


Q ss_pred             CCCEEEEEeCCCcEEEeeCC
Q psy3599         200 DESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       200 ~~~~l~s~s~d~~i~iwd~~  219 (223)
                      .|.+|+.-+.|..||.|+++
T Consensus       207 ~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  207 KGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             cCcEEEEecCCceEEEEehh
Confidence            99999999999999999986

>KOG0270|consensus

Probab=99.39  E-value=1.2e-11  Score=98.09  Aligned_cols=123  Identities=18%  Similarity=0.381  Sum_probs=96.8

Q ss_pred             cCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEE
Q psy3599          82 SQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVT  161 (223)
Q Consensus        82 ~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~s  161 (223)
                      |++.+|.+++|.      +..+.+|++|+.++  ++.+.|..........+  .-.+.+  -+..|.|.    ....+++
T Consensus       284 ~~~k~Vq~l~wh------~~~p~~LLsGs~D~--~V~l~D~R~~~~s~~~w--k~~g~V--Ekv~w~~~----se~~f~~  347 (463)
T KOG0270|consen  284 HHGKKVQTLEWH------PYEPSVLLSGSYDG--TVALKDCRDPSNSGKEW--KFDGEV--EKVAWDPH----SENSFFV  347 (463)
T ss_pred             hcCCceeEEEec------CCCceEEEeccccc--eEEeeeccCccccCceE--Eeccce--EEEEecCC----CceeEEE
Confidence            459999999999      47889999999999  89888876322222222  112332  22268775    5778899


Q ss_pred             ecCCCcEEEEEcccCcccccceeecccccCEEEEEEecC-CCEEEEEeCCCcEEEeeCCCCC
Q psy3599         162 GSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD-ESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       162 gs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +..||.|+-+|++..  ++++.++++|...|.+++++.. .++++|+|.|+.|++|++....
T Consensus       348 ~tddG~v~~~D~R~~--~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  348 STDDGTVYYFDIRNP--GKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS  407 (463)
T ss_pred             ecCCceEEeeecCCC--CCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence            999999999999983  5899999999999999999986 7789999999999999986543

>KOG4328|consensus

Probab=99.39  E-value=7.1e-12  Score=99.72  Aligned_cols=147  Identities=16%  Similarity=0.182  Sum_probs=100.0

Q ss_pred             ccCCcEEEEEECCCC--ceeeee----------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCC
Q psy3599          57 RSTGVIVSILCDDLG--RLSKGK----------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAAN  112 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~--~~~~~~----------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~  112 (223)
                      .+.+.|.++.|.|..  +++..+                      ....| ..+|.+|.|+      |.+...+.+.|.|
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~h-s~~Vs~l~F~------P~n~s~i~ssSyD  256 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPH-SGPVSGLKFS------PANTSQIYSSSYD  256 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccC-CccccceEec------CCChhheeeeccC
Confidence            466778888888822  343322                      22334 7899999999      3666777777777


Q ss_pred             CeEEEEEecCCCceE--Eee--------------------eee---------------------ccccCcceeEEE-eee
Q psy3599         113 AVCILKVLDKEGAVQ--LKR--------------------KFN---------------------VNHKSSKYQVRS-TFC  148 (223)
Q Consensus       113 ~~~~v~i~d~~~~~~--~~~--------------------~~~---------------------~~h~~~~~~i~~-~~s  148 (223)
                      +  ++++-|+++...  +..                    .+.                     .-|...   |+. +++
T Consensus       257 G--tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK---I~sv~~N  331 (498)
T KOG4328|consen  257 G--TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK---ITSVALN  331 (498)
T ss_pred             c--eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc---cceeecC
Confidence            7  676666543210  000                    000                     012222   444 677


Q ss_pred             cCcccCCCcEEEEecCCCcEEEEEcccCcccc-cceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         149 PIMSFREGACVVTGSEDSCVYFLDIQSKEHKN-AVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       149 ~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      |.    ...+++|+|.|++++|||++.-.... ++.....|+..|.+..|+|.+..|+|.+.|..|+|||..
T Consensus       332 P~----~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  332 PV----CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             CC----CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            76    78899999999999999998621112 334445699999999999997779999999999999983

>KOG0649|consensus

Probab=99.39  E-value=2.3e-12  Score=95.23  Aligned_cols=143  Identities=14%  Similarity=0.167  Sum_probs=94.3

Q ss_pred             cCCcEEEEEECC--------CCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceE--
Q psy3599          58 STGVIVSILCDD--------LGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQ--  127 (223)
Q Consensus        58 ~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~--  127 (223)
                      ..|.|...+.+.        .|+.... ..+.| +.+|+.++|.         ..+|++|+++.   ++-|.......  
T Consensus        30 ~~G~iav~sl~sl~s~sa~~~gk~~iv-~eqah-dgpiy~~~f~---------d~~Lls~gdG~---V~gw~W~E~~es~   95 (325)
T KOG0649|consen   30 LFGDIAVLSLKSLDSGSAEPPGKLKIV-PEQAH-DGPIYYLAFH---------DDFLLSGGDGL---VYGWEWNEEEESL   95 (325)
T ss_pred             CCCeEEEEEehhhhccccCCCCCccee-ecccc-CCCeeeeeee---------hhheeeccCce---EEEeeehhhhhhc
Confidence            346665555433        3333322 34677 9999999997         57788888754   44443321111  


Q ss_pred             ----EeeeeeccccC--cceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecC
Q psy3599         128 ----LKRKFNVNHKS--SKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD  200 (223)
Q Consensus       128 ----~~~~~~~~h~~--~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~  200 (223)
                          +......-|.+  +..-|.+ ...|.     .+-++.++-|+.++.||+++   +.....+++|++.|.++.-...
T Consensus        96 ~~K~lwe~~~P~~~~~~evPeINam~ldP~-----enSi~~AgGD~~~y~~dlE~---G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   96 ATKRLWEVKIPMQVDAVEVPEINAMWLDPS-----ENSILFAGGDGVIYQVDLED---GRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             cchhhhhhcCccccCcccCCccceeEeccC-----CCcEEEecCCeEEEEEEecC---CEEEEEEcCCcceeeeeeeccc
Confidence                11111112221  1112555 45663     44455555899999999999   9999999999999999998555


Q ss_pred             CCEEEEEeCCCcEEEeeCCCCC
Q psy3599         201 ESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       201 ~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ...+++|+.||++|+||+++++
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k  189 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQK  189 (325)
T ss_pred             CcceeecCCCccEEEEeccccc
Confidence            5668899999999999999875

>KOG2394|consensus

Probab=99.38  E-value=2.6e-12  Score=104.17  Aligned_cols=98  Identities=21%  Similarity=0.357  Sum_probs=80.7

Q ss_pred             eeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcE
Q psy3599          79 LVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGAC  158 (223)
Q Consensus        79 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~  158 (223)
                      +... ...|..++|+       +||.+||+.+.|+  .+||+|..+.+.+. .++ ..-+..  ++++|+|     |+++
T Consensus       286 w~~~-~g~in~f~FS-------~DG~~LA~VSqDG--fLRvF~fdt~eLlg-~mk-SYFGGL--LCvcWSP-----DGKy  346 (636)
T KOG2394|consen  286 WHIG-EGSINEFAFS-------PDGKYLATVSQDG--FLRIFDFDTQELLG-VMK-SYFGGL--LCVCWSP-----DGKY  346 (636)
T ss_pred             eEec-cccccceeEc-------CCCceEEEEecCc--eEEEeeccHHHHHH-HHH-hhccce--EEEEEcC-----CccE
Confidence            3344 5588899999       8999999999999  99999998775433 221 222331  5559999     8999


Q ss_pred             EEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEe
Q psy3599         159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFN  198 (223)
Q Consensus       159 l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~  198 (223)
                      |++|++|--|.||.+..   ...+.--++|+++|+.|+|.
T Consensus       347 IvtGGEDDLVtVwSf~e---rRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  347 IVTGGEDDLVTVWSFEE---RRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             EEecCCcceEEEEEecc---ceEEEeccccccceeeEeec
Confidence            99999999999999999   88899999999999999998

>KOG1445|consensus

Probab=99.38  E-value=4.6e-12  Score=104.78  Aligned_cols=124  Identities=21%  Similarity=0.270  Sum_probs=100.4

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEe---eeeeccccCcceeEEE-eeecCccc
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLK---RKFNVNHKSSKYQVRS-TFCPIMSF  153 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~---~~~~~~h~~~~~~i~~-~~s~~~~~  153 (223)
                      .+-.| +..|+++.|+      |.+..+|++|+.|.  .++||.+..+....   .....+|.+..  +.| .|+|+   
T Consensus        74 ~l~~H-~d~VtDl~Fs------pF~D~LLAT~S~D~--~VKiW~lp~g~~q~LSape~~~g~~~~~--vE~l~fHpT---  139 (1012)
T KOG1445|consen   74 ILAAH-GDQVTDLGFS------PFADELLATCSRDE--PVKIWKLPRGHSQKLSAPEIDVGGGNVI--VECLRFHPT---  139 (1012)
T ss_pred             eeecc-cceeeccCcc------ccchhhhhcccCCC--eeEEEecCCCcccccCCcceeecCCceE--EEEeecccC---
Confidence            55666 9999999999      47888999999999  89999887442111   11114676666  777 89996   


Q ss_pred             CCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         154 REGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       154 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                       ...++++ +.-|++++||+.+   ++.+..+.+|.+.|.+..|+.||..|++++.|+.|+|||.|.
T Consensus       140 -aDgil~s-~a~g~v~i~D~st---qk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa  201 (1012)
T KOG1445|consen  140 -ADGILAS-GAHGSVYITDIST---QKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA  201 (1012)
T ss_pred             -cCceEEe-ccCceEEEEEccc---CceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence             3445554 4568999999999   889999999999999999999999999999999999999986

>KOG0290|consensus

Probab=99.36  E-value=1.3e-11  Score=93.34  Aligned_cols=122  Identities=21%  Similarity=0.403  Sum_probs=96.8

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCce--EEeeeeeccccCcceeEEEeeecCcccCCCcEEEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAV--QLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVT  161 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~--~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~s  161 (223)
                      ..+++++.|.      .-+.++|.++|-|.  +..|||++++.  .+++.+ ..|..++  ...+|...    ...++++
T Consensus       150 ~aPlTSFDWn------e~dp~~igtSSiDT--TCTiWdie~~~~~~vkTQL-IAHDKEV--~DIaf~~~----s~~~FAS  214 (364)
T KOG0290|consen  150 CAPLTSFDWN------EVDPNLIGTSSIDT--TCTIWDIETGVSGTVKTQL-IAHDKEV--YDIAFLKG----SRDVFAS  214 (364)
T ss_pred             CCcccccccc------cCCcceeEeecccC--eEEEEEEeeccccceeeEE-EecCcce--eEEEeccC----ccceEEE
Confidence            6799999998      57889999999999  89999999862  245444 5999996  33368763    4679999


Q ss_pred             ecCCCcEEEEEcccCccc---------------------------------------------ccceeecccccCEEEEE
Q psy3599         162 GSEDSCVYFLDIQSKEHK---------------------------------------------NAVNKLQGHACPVLGVS  196 (223)
Q Consensus       162 gs~dg~v~iwd~~~~~~~---------------------------------------------~~~~~~~~h~~~v~~v~  196 (223)
                      .+.||+|++||++...+.                                             .++..+.+|...|+.++
T Consensus       215 vgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIa  294 (364)
T KOG0290|consen  215 VGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIA  294 (364)
T ss_pred             ecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceE
Confidence            999999999998753211                                             12233568999999999


Q ss_pred             EecC-CCEEEEEeCCCcEEEeeCCC
Q psy3599         197 FNYD-ESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       197 ~~~~-~~~l~s~s~d~~i~iwd~~~  220 (223)
                      |.|. .+.|.|++.|..+.|||+..
T Consensus       295 WaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  295 WAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             ecCCCCceeeecCCcceEEEEeccc
Confidence            9996 77899999999999999865

>KOG1188|consensus

Probab=99.36  E-value=1.4e-11  Score=94.85  Aligned_cols=142  Identities=16%  Similarity=0.262  Sum_probs=98.9

Q ss_pred             cCCcEEEEEECCCCceeeeeeeeecCCCCeeEEEEeecccccCC--CCeEEEEEeCCCeEEEEEecCCCceEEeeeeecc
Q psy3599          58 STGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREAR--DPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVN  135 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~--~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~  135 (223)
                      ..|.|.....+ +|+++.  .+.++ ...+..+.|.       .  .+..+.+|+.|+  .|++||+............+
T Consensus        48 Sngsv~lyd~~-tg~~l~--~fk~~-~~~~N~vrf~-------~~ds~h~v~s~ssDG--~Vr~wD~Rs~~e~a~~~~~~  114 (376)
T KOG1188|consen   48 SNGSVRLYDKG-TGQLLE--EFKGP-PATTNGVRFI-------SCDSPHGVISCSSDG--TVRLWDIRSQAESARISWTQ  114 (376)
T ss_pred             cCCeEEEEecc-chhhhh--eecCC-CCcccceEEe-------cCCCCCeeEEeccCC--eEEEEEeecchhhhheeccC
Confidence            34555533333 344443  55666 7788889998       4  456778899999  89999988665443322235


Q ss_pred             ccCcceeEEE-eeecCcccCCCcEEEEecC----CCcEEEEEcccCcccccceee-cccccCEEEEEEecC-CCEEEEEe
Q psy3599         136 HKSSKYQVRS-TFCPIMSFREGACVVTGSE----DSCVYFLDIQSKEHKNAVNKL-QGHACPVLGVSFNYD-ESLLATSD  208 (223)
Q Consensus       136 h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~----dg~v~iwd~~~~~~~~~~~~~-~~h~~~v~~v~~~~~-~~~l~s~s  208 (223)
                      +.+.+  ..| +.+.     .+..+++|.+    +-.|.+||++..  .+++..+ ..|.+.|+++.|+|. .++|+|||
T Consensus       115 ~~~~~--f~~ld~nc-----k~~ii~~GtE~~~s~A~v~lwDvR~~--qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS  185 (376)
T KOG1188|consen  115 QSGTP--FICLDLNC-----KKNIIACGTELTRSDASVVLWDVRSE--QQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS  185 (376)
T ss_pred             CCCCc--ceEeeccC-----cCCeEEeccccccCceEEEEEEeccc--cchhhhhhhhccCcceeEEecCCCCCeEEeec
Confidence            55343  333 4443     5778888875    568999999982  3335544 569999999999995 78999999


Q ss_pred             CCCcEEEeeCCCC
Q psy3599         209 YQGLIILWSREKH  221 (223)
Q Consensus       209 ~d~~i~iwd~~~~  221 (223)
                      .||.|.+||++..
T Consensus       186 vDGLvnlfD~~~d  198 (376)
T KOG1188|consen  186 VDGLVNLFDTKKD  198 (376)
T ss_pred             ccceEEeeecCCC
Confidence            9999999998754

>KOG1273|consensus

Probab=99.36  E-value=2.6e-12  Score=98.06  Aligned_cols=73  Identities=23%  Similarity=0.322  Sum_probs=67.9

Q ss_pred             EEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         143 VRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       143 i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+|.|++     .|.+++.|+.||.|-|||+.+   ...-..+.+|..+|.+++|+++|.+|+|+|.|.+|.+||+..|.
T Consensus        27 ~~~~Fs~-----~G~~lAvGc~nG~vvI~D~~T---~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs   98 (405)
T KOG1273|consen   27 ECCQFSR-----WGDYLAVGCANGRVVIYDFDT---FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS   98 (405)
T ss_pred             ceEEecc-----CcceeeeeccCCcEEEEEccc---cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence            5568999     699999999999999999999   77788889999999999999999999999999999999999886


Q ss_pred             C
Q psy3599         223 P  223 (223)
Q Consensus       223 ~  223 (223)
                      |
T Consensus        99 ~   99 (405)
T KOG1273|consen   99 P   99 (405)
T ss_pred             c
Confidence            4

>KOG0644|consensus

Probab=99.36  E-value=4e-13  Score=113.74  Aligned_cols=115  Identities=17%  Similarity=0.328  Sum_probs=101.2

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      .+.+| -..|+|..|.       ..|.+++++++|.  .++||..++..++...  .||...   ++- +.+.     +.
T Consensus       185 rLlgH-~naVyca~fD-------rtg~~Iitgsdd~--lvKiwS~et~~~lAs~--rGhs~d---itdlavs~-----~n  244 (1113)
T KOG0644|consen  185 RLLGH-RNAVYCAIFD-------RTGRYIITGSDDR--LVKIWSMETARCLASC--RGHSGD---ITDLAVSS-----NN  244 (1113)
T ss_pred             HHHhh-hhheeeeeec-------cccceEeecCccc--eeeeeeccchhhhccC--CCCccc---cchhccch-----hh
Confidence            45567 8899999999       9999999999999  9999999988877754  599988   544 5555     68


Q ss_pred             cEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         157 ACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      .+++++|.|..|++|.++.   +.++..+.+|++.|++++|+|..    +.+.||++++||.+
T Consensus       245 ~~iaaaS~D~vIrvWrl~~---~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  245 TMIAAASNDKVIRVWRLPD---GAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             hhhhhcccCceEEEEecCC---CchHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence            8999999999999999999   99999999999999999999954    67789999999987

>KOG1063|consensus

Probab=99.36  E-value=2.2e-11  Score=101.37  Aligned_cols=146  Identities=15%  Similarity=0.216  Sum_probs=111.8

Q ss_pred             cccCCcEEEEEECCCCceeeee-----------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCC
Q psy3599          56 LRSTGVIVSILCDDLGRLSKGK-----------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAAN  112 (223)
Q Consensus        56 ~~~~~~i~~~~~~~~~~~~~~~-----------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~  112 (223)
                      .||.-.|+++..+|+|+++++.                       .+..| .-.|+.++|+       ||+++|++.+.|
T Consensus       522 YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~H-sLTVT~l~FS-------pdg~~LLsvsRD  593 (764)
T KOG1063|consen  522 YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGH-SLTVTRLAFS-------PDGRYLLSVSRD  593 (764)
T ss_pred             ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheeccc-ceEEEEEEEC-------CCCcEEEEeecC
Confidence            4899999999999999998665                       45667 8899999999       999999999999


Q ss_pred             CeEEEEEecCCCceEEeeee--eccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCccccccee--eccc
Q psy3599         113 AVCILKVLDKEGAVQLKRKF--NVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNK--LQGH  188 (223)
Q Consensus       113 ~~~~v~i~d~~~~~~~~~~~--~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~h  188 (223)
                      .  ++.+|...........|  ...|+.-+  -.|.|+|     ++.+++|+|.|.+|++|...... .+.+..  ...+
T Consensus       594 R--t~sl~~~~~~~~~e~~fa~~k~HtRII--WdcsW~p-----de~~FaTaSRDK~VkVW~~~~~~-d~~i~~~a~~~~  663 (764)
T KOG1063|consen  594 R--TVSLYEVQEDIKDEFRFACLKAHTRII--WDCSWSP-----DEKYFATASRDKKVKVWEEPDLR-DKYISRFACLKF  663 (764)
T ss_pred             c--eEEeeeeecccchhhhhccccccceEE--EEcccCc-----ccceeEEecCCceEEEEeccCch-hhhhhhhchhcc
Confidence            9  99999875432221111  13565553  3448999     79999999999999999988711 133333  3447


Q ss_pred             ccCEEEEEEecC-----CCEEEEEeCCCcEEEeeCC
Q psy3599         189 ACPVLGVSFNYD-----ESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       189 ~~~v~~v~~~~~-----~~~l~s~s~d~~i~iwd~~  219 (223)
                      ...|+++++.|-     +..++.|-..|.|.+|...
T Consensus       664 ~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  664 SLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             CCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            889999999873     3367888899999999854

>KOG1007|consensus

Probab=99.36  E-value=1.3e-11  Score=93.23  Aligned_cols=119  Identities=21%  Similarity=0.421  Sum_probs=87.9

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeee----ccccCcceeEEE-eeecCcccCCCcE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFN----VNHKSSKYQVRS-TFCPIMSFREGAC  158 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~----~~h~~~~~~i~~-~~s~~~~~~~~~~  158 (223)
                      -+.|.|+.|.       |++..+++-.++.   +.+|++..+..+...+.    .+++..   ..+ .|+|..   +++.
T Consensus       123 vg~i~cvew~-------Pns~klasm~dn~---i~l~~l~ess~~vaev~ss~s~e~~~~---ftsg~WspHH---dgnq  186 (370)
T KOG1007|consen  123 VGKINCVEWE-------PNSDKLASMDDNN---IVLWSLDESSKIVAEVLSSESAEMRHS---FTSGAWSPHH---DGNQ  186 (370)
T ss_pred             hCceeeEEEc-------CCCCeeEEeccCc---eEEEEcccCcchheeecccccccccce---ecccccCCCC---ccce
Confidence            4589999999       8899888877666   56777765544222211    222333   555 799842   6777


Q ss_pred             EEEecCCCcEEEEEcccCcccccceee-cccccCEEEEEEecC-CCEEEEEeCCCcEEEeeCCCCC
Q psy3599         159 VVTGSEDSCVYFLDIQSKEHKNAVNKL-QGHACPVLGVSFNYD-ESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       159 l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +++. .|+++..||+++   ..+..++ .+|...|..+.|+|+ ..+|+||+.||.|+|||.|..+
T Consensus       187 v~tt-~d~tl~~~D~RT---~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk  248 (370)
T KOG1007|consen  187 VATT-SDSTLQFWDLRT---MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK  248 (370)
T ss_pred             EEEe-CCCcEEEEEccc---hhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC
Confidence            7664 578999999999   7766666 468889999999998 4578999999999999999754

>KOG0301|consensus

Probab=99.34  E-value=5.2e-11  Score=99.18  Aligned_cols=137  Identities=11%  Similarity=0.148  Sum_probs=101.7

Q ss_pred             ccCCcEEEEEECCCCce-----------eeee----eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEec
Q psy3599          57 RSTGVIVSILCDDLGRL-----------SKGK----RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLD  121 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~-----------~~~~----~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d  121 (223)
                      +|...|.++..=|++.+           |...    .+.+| .+-|..+++.       ++ ..|++|+.|+  .|++|+
T Consensus       138 gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~~~l~tf~gH-tD~VRgL~vl-------~~-~~flScsNDg--~Ir~w~  206 (745)
T KOG0301|consen  138 GHTASVWAVASLPENTYVTGSADKTIKLWKGGTLLKTFSGH-TDCVRGLAVL-------DD-SHFLSCSNDG--SIRLWD  206 (745)
T ss_pred             CcchheeeeeecCCCcEEeccCcceeeeccCCchhhhhccc-hhheeeeEEe-------cC-CCeEeecCCc--eEEEEe
Confidence            56666666655444333           3221    56777 8999999997       44 4567888899  899999


Q ss_pred             CCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCC
Q psy3599         122 KEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDE  201 (223)
Q Consensus       122 ~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~  201 (223)
                      .. +.++...  .||++.+|.+.  ..+     ++..++++++|++++||+..     ++...+......|+++.+-++|
T Consensus       207 ~~-ge~l~~~--~ghtn~vYsis--~~~-----~~~~Ivs~gEDrtlriW~~~-----e~~q~I~lPttsiWsa~~L~Ng  271 (745)
T KOG0301|consen  207 LD-GEVLLEM--HGHTNFVYSIS--MAL-----SDGLIVSTGEDRTLRIWKKD-----ECVQVITLPTTSIWSAKVLLNG  271 (745)
T ss_pred             cc-Cceeeee--eccceEEEEEE--ecC-----CCCeEEEecCCceEEEeecC-----ceEEEEecCccceEEEEEeeCC
Confidence            94 5566644  59999965444  444     68899999999999999965     4666666555589999998888


Q ss_pred             CEEEEEeCCCcEEEeeCCC
Q psy3599         202 SLLATSDYQGLIILWSREK  220 (223)
Q Consensus       202 ~~l~s~s~d~~i~iwd~~~  220 (223)
                      . +++|++||.||+|-...
T Consensus       272 D-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  272 D-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             C-EEEeccCceEEEEEecc
Confidence            8 67888899999997653

>KOG2048|consensus

Probab=99.33  E-value=1.1e-10  Score=97.09  Aligned_cols=122  Identities=19%  Similarity=0.328  Sum_probs=94.0

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      .+.++....|.+++|+       +.++++-+ +.++  .+.-||+.+++....   ....+..  +.+ +.+|     .+
T Consensus        63 vi~g~~drsIE~L~W~-------e~~RLFS~-g~sg--~i~EwDl~~lk~~~~---~d~~gg~--IWsiai~p-----~~  122 (691)
T KOG2048|consen   63 VIHGPEDRSIESLAWA-------EGGRLFSS-GLSG--SITEWDLHTLKQKYN---IDSNGGA--IWSIAINP-----EN  122 (691)
T ss_pred             EEecCCCCceeeEEEc-------cCCeEEee-cCCc--eEEEEecccCceeEE---ecCCCcc--eeEEEeCC-----cc
Confidence            5566768899999998       66665544 5556  678899888766653   2333333  776 7888     68


Q ss_pred             cEEEEecCCCcEEEEEcccCcccccce--eecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         157 ACVVTGSEDSCVYFLDIQSKEHKNAVN--KLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~~~~~~~~~--~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +.++.|++||.++.++...   ++..+  .+...+++|.+++|+|++..+++|+.||.|++||..++.
T Consensus       123 ~~l~IgcddGvl~~~s~~p---~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~  187 (691)
T KOG2048|consen  123 TILAIGCDDGVLYDFSIGP---DKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ  187 (691)
T ss_pred             ceEEeecCCceEEEEecCC---ceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCc
Confidence            9999999999888888777   55443  345567899999999999999999999999999998764

>KOG1274|consensus

Probab=99.33  E-value=6.6e-11  Score=101.27  Aligned_cols=140  Identities=18%  Similarity=0.306  Sum_probs=104.0

Q ss_pred             ccCCcEEEEEECCCCceeeee-------ee-----------eecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK-------RL-----------VLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK  118 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~-------~~-----------~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~  118 (223)
                      .|.+....+.|+++|.++.+.       .+           ....+..|.+++-         .+.+|++++.+.  ++.
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~---------~s~~f~~~s~~~--tv~   79 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC---------YSNHFLTGSEQN--TVL   79 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee---------cccceEEeeccc--eEE
Confidence            355556666676666655332       01           1102556666664         466889999888  888


Q ss_pred             EecCCCceE--EeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEE
Q psy3599         119 VLDKEGAVQ--LKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGV  195 (223)
Q Consensus       119 i~d~~~~~~--~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v  195 (223)
                      +|...++..  +...|.    - +  +++ +++.     +|++++.||.|-.|++-+...   ......+.+|+.+|.++
T Consensus        80 ~y~fps~~~~~iL~Rft----l-p--~r~~~v~g-----~g~~iaagsdD~~vK~~~~~D---~s~~~~lrgh~apVl~l  144 (933)
T KOG1274|consen   80 RYKFPSGEEDTILARFT----L-P--IRDLAVSG-----SGKMIAAGSDDTAVKLLNLDD---SSQEKVLRGHDAPVLQL  144 (933)
T ss_pred             EeeCCCCCccceeeeee----c-c--ceEEEEec-----CCcEEEeecCceeEEEEeccc---cchheeecccCCceeee
Confidence            888776532  222221    1 2  666 7887     799999999999999999988   77889999999999999


Q ss_pred             EEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         196 SFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       196 ~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .|+|++++||+.+.||.|++||+..+.
T Consensus       145 ~~~p~~~fLAvss~dG~v~iw~~~~~~  171 (933)
T KOG1274|consen  145 SYDPKGNFLAVSSCDGKVQIWDLQDGI  171 (933)
T ss_pred             eEcCCCCEEEEEecCceEEEEEcccch
Confidence            999999999999999999999998754

>KOG1310|consensus

Probab=99.32  E-value=1.1e-11  Score=100.99  Aligned_cols=129  Identities=19%  Similarity=0.282  Sum_probs=103.9

Q ss_pred             eeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCC
Q psy3599          77 KRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREG  156 (223)
Q Consensus        77 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~  156 (223)
                      +.+++| .+-|.++.|+       .+|.+|++||+|.  .+-|||.-..+.+. .+..||...++.+  .|-|..   +.
T Consensus        44 ~eL~GH-~GCVN~LeWn-------~dG~lL~SGSDD~--r~ivWd~~~~Kllh-sI~TgHtaNIFsv--KFvP~t---nn  107 (758)
T KOG1310|consen   44 AELTGH-TGCVNCLEWN-------ADGELLASGSDDT--RLIVWDPFEYKLLH-SISTGHTANIFSV--KFVPYT---NN  107 (758)
T ss_pred             hhhccc-cceecceeec-------CCCCEEeecCCcc--eEEeecchhcceee-eeecccccceeEE--eeeccC---CC
Confidence            367888 8999999999       9999999999999  88999987554444 4446999995222  687742   67


Q ss_pred             cEEEEecCCCcEEEEEcccCc-------ccccceeecccccCEEEEEEecCC-CEEEEEeCCCcEEEeeCCCC
Q psy3599         157 ACVVTGSEDSCVYFLDIQSKE-------HKNAVNKLQGHACPVLGVSFNYDE-SLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~~~-------~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~d~~i~iwd~~~~  221 (223)
                      ..+++|..|..|+++|+....       ..+....+..|...|..++-.|++ +.+-+++.||+++-+|+|.+
T Consensus       108 riv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp  180 (758)
T KOG1310|consen  108 RIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP  180 (758)
T ss_pred             eEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence            899999999999999998410       024455667788999999999986 78999999999999999864

>KOG0268|consensus

Probab=99.31  E-value=7.8e-12  Score=97.01  Aligned_cols=109  Identities=18%  Similarity=0.304  Sum_probs=88.0

Q ss_pred             CCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCccc
Q psy3599         100 ARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHK  179 (223)
Q Consensus       100 ~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~  179 (223)
                      |-....|++|..|+  .+-+||......+.+... +...    -..+|+|     ....+++|++|..++.+|++.-  .
T Consensus       197 pvETsILas~~sDr--sIvLyD~R~~~Pl~KVi~-~mRT----N~IswnP-----eafnF~~a~ED~nlY~~DmR~l--~  262 (433)
T KOG0268|consen  197 PVETSILASCASDR--SIVLYDLRQASPLKKVIL-TMRT----NTICWNP-----EAFNFVAANEDHNLYTYDMRNL--S  262 (433)
T ss_pred             CCcchheeeeccCC--ceEEEecccCCccceeee-eccc----cceecCc-----cccceeeccccccceehhhhhh--c
Confidence            56778888887777  788999987766654332 2221    1225999     7899999999999999999972  4


Q ss_pred             ccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         180 NAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       180 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .++...++|.+.|.+|+|+|.|.-|++||.|++|+||..+.+.
T Consensus       263 ~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~  305 (433)
T KOG0268|consen  263 RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH  305 (433)
T ss_pred             ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc
Confidence            6788889999999999999999999999999999999987653

>KOG4378|consensus

Probab=99.29  E-value=1.2e-10  Score=94.04  Aligned_cols=146  Identities=15%  Similarity=0.251  Sum_probs=107.2

Q ss_pred             ccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK  118 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~  118 (223)
                      +|...|..+-|+.+-..++..                  .+....+..|.-+.|+      +....+|.++++++  .|.
T Consensus       119 dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys------~skr~lL~~asd~G--~Vt  190 (673)
T KOG4378|consen  119 DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYS------PSKRFLLSIASDKG--AVT  190 (673)
T ss_pred             CCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecc------cccceeeEeeccCC--eEE
Confidence            677778777776633322211                  2222224567789999      24455677899999  899


Q ss_pred             EecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEE
Q psy3599         119 VLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSF  197 (223)
Q Consensus       119 i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~  197 (223)
                      +||........... ..|...   ... +|+|.    +..+|++-+.|..|++||...   ......+. ...+..+++|
T Consensus       191 lwDv~g~sp~~~~~-~~HsAP---~~gicfsps----ne~l~vsVG~Dkki~~yD~~s---~~s~~~l~-y~~Plstvaf  258 (673)
T KOG4378|consen  191 LWDVQGMSPIFHAS-EAHSAP---CRGICFSPS----NEALLVSVGYDKKINIYDIRS---QASTDRLT-YSHPLSTVAF  258 (673)
T ss_pred             EEeccCCCcccchh-hhccCC---cCcceecCC----ccceEEEecccceEEEeeccc---ccccceee-ecCCcceeee
Confidence            99998665444333 366665   444 89997    788999999999999999998   55555554 4567899999


Q ss_pred             ecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         198 NYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       198 ~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .++|.+|+.|+..|.|..||+|..+
T Consensus       259 ~~~G~~L~aG~s~G~~i~YD~R~~k  283 (673)
T KOG4378|consen  259 SECGTYLCAGNSKGELIAYDMRSTK  283 (673)
T ss_pred             cCCceEEEeecCCceEEEEecccCC
Confidence            9999999999999999999998754

>KOG1009|consensus

Probab=99.28  E-value=3.2e-11  Score=94.77  Aligned_cols=126  Identities=14%  Similarity=0.321  Sum_probs=93.2

Q ss_pred             eecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCc---e---EE--eeeeeccccCcceeEEE-eeecC
Q psy3599          80 VLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGA---V---QL--KRKFNVNHKSSKYQVRS-TFCPI  150 (223)
Q Consensus        80 ~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~---~---~~--~~~~~~~h~~~~~~i~~-~~s~~  150 (223)
                      .-|...++..+.|.      +.+...|++|+.|.  .+++|-.+.+   .   .+  ...+ ..|...   +.+ .|+| 
T Consensus         9 ~wH~~~pv~s~dfq------~n~~~~laT~G~D~--~iriW~v~r~~~~~~~~~V~y~s~L-s~H~~a---VN~vRf~p-   75 (434)
T KOG1009|consen    9 SWHDHEPVYSVDFQ------KNSLNKLATAGGDK--DIRIWKVNRSEPGGGDMKVEYLSSL-SRHTRA---VNVVRFSP-   75 (434)
T ss_pred             EecCCCceEEEEec------cCcccceecccCcc--ceeeeeeeecCCCCCceeEEEeecc-cCCcce---eEEEEEcC-
Confidence            34567899999998      23344999998777  6777755422   1   11  1222 367777   444 6999 


Q ss_pred             cccCCCcEEEEecCCCcEEEEEcc--------c-----CcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEee
Q psy3599         151 MSFREGACVVTGSEDSCVYFLDIQ--------S-----KEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWS  217 (223)
Q Consensus       151 ~~~~~~~~l~sgs~dg~v~iwd~~--------~-----~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd  217 (223)
                          +|+++++|+.+|.|.+|...        +     .+.-...+.+.+|...|..++|+|+++++++++.|+++++||
T Consensus        76 ----~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~D  151 (434)
T KOG1009|consen   76 ----DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWD  151 (434)
T ss_pred             ----CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEE
Confidence                79999999999999999876        1     000112345567999999999999999999999999999999


Q ss_pred             CCCCC
Q psy3599         218 REKHE  222 (223)
Q Consensus       218 ~~~~~  222 (223)
                      +..|+
T Consensus       152 v~~G~  156 (434)
T KOG1009|consen  152 VHAGQ  156 (434)
T ss_pred             eccce
Confidence            98764

>KOG1063|consensus

Probab=99.28  E-value=3.3e-11  Score=100.34  Aligned_cols=127  Identities=17%  Similarity=0.311  Sum_probs=100.7

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCC---eEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANA---VCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFR  154 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~---~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~  154 (223)
                      .+.+| +..|++++.+       |+++++|+++...   ...|++|+..+=..+. .+ .+|+-.+  .+..|+|     
T Consensus       520 KLYGH-GyEv~~l~~s-------~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~-~L-~~HsLTV--T~l~FSp-----  582 (764)
T KOG1063|consen  520 KLYGH-GYEVYALAIS-------PTGNLIASACKSSLKEHAVIRLWNTANWLQVQ-EL-EGHSLTV--TRLAFSP-----  582 (764)
T ss_pred             HhccC-ceeEEEEEec-------CCCCEEeehhhhCCccceEEEEEeccchhhhh-ee-cccceEE--EEEEECC-----
Confidence            45567 9999999999       9999999988433   3468899877554444 23 4888774  4448999     


Q ss_pred             CCcEEEEecCCCcEEEEEcccCcccc-cceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         155 EGACVVTGSEDSCVYFLDIQSKEHKN-AVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       155 ~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      ++.+|++.|.|..+.+|......+.+ .....++|+.-|++.+|+|++.+|+|+|-|++|++|.....
T Consensus       583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            89999999999999999986511111 23457899999999999999999999999999999987654

>KOG1408|consensus

Probab=99.27  E-value=1.1e-10  Score=97.98  Aligned_cols=150  Identities=21%  Similarity=0.235  Sum_probs=114.2

Q ss_pred             ccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK  118 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~  118 (223)
                      +....|.+++.+|+|+.++..                  .+..| +..|.|+.|+-    ..-...+|++++.|.  .|+
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAH-esEilcLeyS~----p~~~~kLLASasrdR--lIH  529 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAH-ESEILCLEYSF----PVLTNKLLASASRDR--LIH  529 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecc-cceeEEEeecC----chhhhHhhhhccCCc--eEE
Confidence            556779999999998887654                  34456 89999999981    112457899999999  899


Q ss_pred             EecCCCceEEeeeeeccccCcceeEEE-----------------------------------------------eeecCc
Q psy3599         119 VLDKEGAVQLKRKFNVNHKSSKYQVRS-----------------------------------------------TFCPIM  151 (223)
Q Consensus       119 i~d~~~~~~~~~~~~~~h~~~~~~i~~-----------------------------------------------~~s~~~  151 (223)
                      ++|......+...+. +|...+..++.                                               ...|  
T Consensus       530 V~Dv~rny~l~qtld-~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp--  606 (1080)
T KOG1408|consen  530 VYDVKRNYDLVQTLD-GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP--  606 (1080)
T ss_pred             EEecccccchhhhhc-ccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC--
Confidence            999876655544443 55544211110                                               1122  


Q ss_pred             ccCCCcEEEEecCCCcEEEEEcccCcccccceeecc---cccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         152 SFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQG---HACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       152 ~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                         ...++++++.|..|+|||+++   ++..+.|++   |++..-.+...|.|.++||.+.|+++.++|.-++|
T Consensus       607 ---~~k~v~t~cQDrnirif~i~s---gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE  674 (1080)
T KOG1408|consen  607 ---TSKLVVTVCQDRNIRIFDIES---GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE  674 (1080)
T ss_pred             ---CcceEEEEecccceEEEeccc---cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccch
Confidence               356899999999999999999   888888865   66677888999999999999999999999998876

>KOG2445|consensus

Probab=99.27  E-value=2.1e-10  Score=87.43  Aligned_cols=122  Identities=19%  Similarity=0.184  Sum_probs=94.0

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCc---eEEeeeeeccccCcceeEEEeeecCcccCCCcEEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGA---VQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVV  160 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~---~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~  160 (223)
                      ..-|.++.|.       +.|+.+++|+.|.  .++|||....   ........ .|.+.+  ++..|.+.   .=|..++
T Consensus        13 ~DlihdVs~D-------~~GRRmAtCSsDq--~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si--~rV~WAhP---EfGqvvA   77 (361)
T KOG2445|consen   13 KDLIHDVSFD-------FYGRRMATCSSDQ--TVKIWDSTSDSGTWSCTSSWR-AHDGSI--WRVVWAHP---EFGQVVA   77 (361)
T ss_pred             cceeeeeeec-------ccCceeeeccCCC--cEEEEeccCCCCceEEeeeEE-ecCCcE--EEEEecCc---cccceEE
Confidence            7889999999       9999999999999  9999995422   22333443 788886  66677552   1489999


Q ss_pred             EecCCCcEEEEEcccCc---c---cccceeecccccCEEEEEEecC--CCEEEEEeCCCcEEEeeCCC
Q psy3599         161 TGSEDSCVYFLDIQSKE---H---KNAVNKLQGHACPVLGVSFNYD--ESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       161 sgs~dg~v~iwd~~~~~---~---~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~s~d~~i~iwd~~~  220 (223)
                      ++|.|+++.||.-....   .   -....++...++.|++|.|.|.  |-++|+++.||++|||+...
T Consensus        78 ~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d  145 (361)
T KOG2445|consen   78 TCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD  145 (361)
T ss_pred             EEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC
Confidence            99999999999974310   0   1134566777889999999995  88999999999999998643

>KOG2445|consensus

Probab=99.26  E-value=4.1e-10  Score=85.91  Aligned_cols=74  Identities=20%  Similarity=0.429  Sum_probs=56.8

Q ss_pred             EEE-eeecCcccCCCcEEEEecCCCcEEEEEcccC-----------c------ccccceeecccccCEEEEEEecCCCEE
Q psy3599         143 VRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSK-----------E------HKNAVNKLQGHACPVLGVSFNYDESLL  204 (223)
Q Consensus       143 i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~-----------~------~~~~~~~~~~h~~~v~~v~~~~~~~~l  204 (223)
                      |+. +|.|.+. +.-.+|++++.|| |+||.+...           +      +-+.+..+..|++.|+.+.|+-.|.+|
T Consensus       226 I~di~wAPn~G-r~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiL  303 (361)
T KOG2445|consen  226 IRDISWAPNIG-RSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTIL  303 (361)
T ss_pred             ceeeeeccccC-CceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEE
Confidence            455 6777421 1345899999999 999998731           0      012345567899999999999999999


Q ss_pred             EEEeCCCcEEEeeC
Q psy3599         205 ATSDYQGLIILWSR  218 (223)
Q Consensus       205 ~s~s~d~~i~iwd~  218 (223)
                      ++.|.||.||+|..
T Consensus       304 sStGdDG~VRLWka  317 (361)
T KOG2445|consen  304 SSTGDDGCVRLWKA  317 (361)
T ss_pred             eecCCCceeeehhh
Confidence            99999999999963

>KOG2919|consensus

Probab=99.26  E-value=1.6e-10  Score=88.71  Aligned_cols=118  Identities=19%  Similarity=0.376  Sum_probs=92.9

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS  163 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs  163 (223)
                      .+-|.+++|+      |-+...++.++-..  .+-||.-..+..+. .+ -+|.+.+  ....|++     +|+.|++|.
T Consensus       207 ~giisc~a~s------P~~~~~~a~gsY~q--~~giy~~~~~~pl~-ll-ggh~gGv--ThL~~~e-----dGn~lfsGa  269 (406)
T KOG2919|consen  207 KGIISCFAFS------PMDSKTLAVGSYGQ--RVGIYNDDGRRPLQ-LL-GGHGGGV--THLQWCE-----DGNKLFSGA  269 (406)
T ss_pred             cceeeeeecc------CCCCcceeeecccc--eeeeEecCCCCcee-ee-cccCCCe--eeEEecc-----CcCeecccc
Confidence            5678899999      35667899999777  77777766554444 33 3888884  4448999     799999988


Q ss_pred             C-CCcEEEEEcccCcccccceeeccccc-CEEEEEE--ecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         164 E-DSCVYFLDIQSKEHKNAVNKLQGHAC-PVLGVSF--NYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       164 ~-dg~v~iwd~~~~~~~~~~~~~~~h~~-~v~~v~~--~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      . |..|..||++..  +.++..+..|.. .-..|.|  .|.+++|++|+.||.|++||++.
T Consensus       270 Rk~dkIl~WDiR~~--~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  270 RKDDKILCWDIRYS--RDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             cCCCeEEEEeehhc--cchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            6 678999999973  678999988877 4455666  47799999999999999999987

>KOG1272|consensus

Probab=99.26  E-value=1.6e-11  Score=98.10  Aligned_cols=115  Identities=17%  Similarity=0.207  Sum_probs=96.9

Q ss_pred             CCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEec
Q psy3599          85 CPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGS  163 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs  163 (223)
                      ..|..+.|.       |.-.+|+++++.+  .++..|+++|+.+....  .-.+.   +.. .-+|     -+..+-+|.
T Consensus       210 ~~v~rLeFL-------PyHfLL~~~~~~G--~L~Y~DVS~GklVa~~~--t~~G~---~~vm~qNP-----~NaVih~Gh  270 (545)
T KOG1272|consen  210 IRVARLEFL-------PYHFLLVAASEAG--FLKYQDVSTGKLVASIR--TGAGR---TDVMKQNP-----YNAVIHLGH  270 (545)
T ss_pred             Cchhhhccc-------chhheeeecccCC--ceEEEeechhhhhHHHH--ccCCc---cchhhcCC-----ccceEEEcC
Confidence            467778888       8888999999999  78888999997665431  22222   444 5677     588999999


Q ss_pred             CCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         164 EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       164 ~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      ..|.|.+|....   .+++.++..|.++|.++++.++|.++||++.|..++|||+|..
T Consensus       271 snGtVSlWSP~s---kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~  325 (545)
T KOG1272|consen  271 SNGTVSLWSPNS---KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF  325 (545)
T ss_pred             CCceEEecCCCC---cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc
Confidence            999999999999   8999999999999999999999999999999999999999864

>KOG2096|consensus

Probab=99.26  E-value=1.3e-10  Score=89.04  Aligned_cols=120  Identities=13%  Similarity=0.190  Sum_probs=88.8

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEee------eee-ccccCcceeEEEeeecC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKR------KFN-VNHKSSKYQVRSTFCPI  150 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~------~~~-~~h~~~~~~i~~~~s~~  150 (223)
                      .+.+| ...|..++|+       +++...++.|.|+  .|++||.+-......      .++ .-|......++...+| 
T Consensus       273 ~LkGH-~saV~~~aFs-------n~S~r~vtvSkDG--~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-  341 (420)
T KOG2096|consen  273 SLKGH-QSAVLAAAFS-------NSSTRAVTVSKDG--KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP-  341 (420)
T ss_pred             eeccc-hhheeeeeeC-------CCcceeEEEecCC--cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC-
Confidence            56778 8999999999       9999999999999  999999863322111      110 1122222237888999 


Q ss_pred             cccCCCcEEEEecCCCcEEEEEcccCcccccceee-cccccCEEEEEEecCCCEEEEEeCCCcEEEee
Q psy3599         151 MSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKL-QGHACPVLGVSFNYDESLLATSDYQGLIILWS  217 (223)
Q Consensus       151 ~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd  217 (223)
                          .++.|+.. ....++++..+.   ++-...+ +.|...|.+++|+++|.+++|++ |..+++..
T Consensus       342 ----~g~~lA~s-~gs~l~~~~se~---g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  342 ----SGDSLAVS-FGSDLKVFASED---GKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             ----CCcEEEee-cCCceEEEEccc---CccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence                67777654 345699999888   6655555 45999999999999999999998 78888764

>KOG0322|consensus

Probab=99.24  E-value=7.7e-11  Score=88.10  Aligned_cols=61  Identities=25%  Similarity=0.342  Sum_probs=59.4

Q ss_pred             CCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeC
Q psy3599         155 EGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       155 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      |++.++|++.|+.+++|..++   ..++..++-|+..|++++|+|+.+++|.+|.|..|.+|++
T Consensus       262 D~KIlATAGWD~RiRVyswrt---l~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  262 DGKILATAGWDHRIRVYSWRT---LNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CCcEEeecccCCcEEEEEecc---CCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            899999999999999999999   9999999999999999999999999999999999999986

>KOG0642|consensus

Probab=99.24  E-value=6.9e-11  Score=96.36  Aligned_cols=122  Identities=16%  Similarity=0.300  Sum_probs=95.1

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCC--------ceEEeeeeeccccCcceeEEEeeecCcccCC
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEG--------AVQLKRKFNVNHKSSKYQVRSTFCPIMSFRE  155 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~--------~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~  155 (223)
                      ...|..+.|.       +....|++++.++  ++++|++..        -+.+. .|. +|.+.+  ++.++.+     +
T Consensus       294 ~d~ir~l~~~-------~sep~lit~sed~--~lk~WnLqk~~~s~~~~~epi~-tfr-aH~gPV--l~v~v~~-----n  355 (577)
T KOG0642|consen  294 DDCIRALAFH-------PSEPVLITASEDG--TLKLWNLQKAKKSAEKDVEPIL-TFR-AHEGPV--LCVVVPS-----N  355 (577)
T ss_pred             hhhhhhhhcC-------CCCCeEEEecccc--chhhhhhcccCCccccceeeeE-EEe-cccCce--EEEEecC-----C
Confidence            6778888887       7788899999999  899998821        12222 454 999995  4437777     7


Q ss_pred             CcEEEEecCCCcEEEEEcccCc-------ccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCCC
Q psy3599         156 GACVVTGSEDSCVYFLDIQSKE-------HKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHEP  223 (223)
Q Consensus       156 ~~~l~sgs~dg~v~iwd~~~~~-------~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~  223 (223)
                      +..+++|+.||+|+.|++....       .......+.||.+.|+.+++++....|+++|.||++++|+.....|
T Consensus       356 ~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~  430 (577)
T KOG0642|consen  356 GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP  430 (577)
T ss_pred             ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence            9999999999999999765210       0123456789999999999999999999999999999999876543

>KOG0303|consensus

Probab=99.24  E-value=1.1e-10  Score=91.70  Aligned_cols=142  Identities=16%  Similarity=0.218  Sum_probs=108.4

Q ss_pred             cccCCcEEEEEECC-CCceeeee-------------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEE
Q psy3599          56 LRSTGVIVSILCDD-LGRLSKGK-------------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNI  109 (223)
Q Consensus        56 ~~~~~~i~~~~~~~-~~~~~~~~-------------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~  109 (223)
                      .+|.+.|.-+.|+| +-..+++.                         .+.+| ...|.-++|+|      --.+.|+++
T Consensus        78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH-~rrVg~V~wHP------tA~NVLlsa  150 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGH-QRRVGLVQWHP------TAPNVLLSA  150 (472)
T ss_pred             cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeec-ceeEEEEeecc------cchhhHhhc
Confidence            46778888888877 32233221                         56677 88899999993      456677787


Q ss_pred             eCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeeccc
Q psy3599         110 AANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGH  188 (223)
Q Consensus       110 ~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h  188 (223)
                      +.|.  .+.+|+..+++.+.+   ..|...   +.+ .|+.     +|.++++.+.|..|+|||.++   ++.+..-.+|
T Consensus       151 g~Dn--~v~iWnv~tgeali~---l~hpd~---i~S~sfn~-----dGs~l~TtckDKkvRv~dpr~---~~~v~e~~~h  214 (472)
T KOG0303|consen  151 GSDN--TVSIWNVGTGEALIT---LDHPDM---VYSMSFNR-----DGSLLCTTCKDKKVRVIDPRR---GTVVSEGVAH  214 (472)
T ss_pred             cCCc--eEEEEeccCCceeee---cCCCCe---EEEEEecc-----CCceeeeecccceeEEEcCCC---CcEeeecccc
Confidence            7777  899999999987776   468777   444 7888     899999999999999999999   8988888888


Q ss_pred             cc-CEEEEEEecCCCEEEEEe---CCCcEEEeeCCC
Q psy3599         189 AC-PVLGVSFNYDESLLATSD---YQGLIILWSREK  220 (223)
Q Consensus       189 ~~-~v~~v~~~~~~~~l~s~s---~d~~i~iwd~~~  220 (223)
                      .+ .-..+.|-.++.++.||-   .+..+-+||..+
T Consensus       215 eG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~n  250 (472)
T KOG0303|consen  215 EGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNN  250 (472)
T ss_pred             cCCCcceeEEeccCceeeeccccccccceeccCccc
Confidence            77 345667777888554443   567789999765

>KOG0290|consensus

Probab=99.23  E-value=3.1e-10  Score=86.00  Aligned_cols=153  Identities=18%  Similarity=0.273  Sum_probs=98.0

Q ss_pred             CCcEEEEEECC-CCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeee---c
Q psy3599          59 TGVIVSILCDD-LGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFN---V  134 (223)
Q Consensus        59 ~~~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~---~  134 (223)
                      .+.|..+.++. .+.++....  ..+..|++.+.|.|....  ...++||+++ |.+|.|++-+-++..++...+.   .
T Consensus        72 ~Nkvqiv~ld~~s~e~~~~a~--fd~~YP~tK~~wiPd~~g--~~pdlLATs~-D~LRlWri~~ee~~~~~~~~L~~~kn  146 (364)
T KOG0290|consen   72 NNKVQIVQLDEDSGELVEDAN--FDHPYPVTKLMWIPDSKG--VYPDLLATSS-DFLRLWRIGDEESRVELQSVLNNNKN  146 (364)
T ss_pred             CCeeEEEEEccCCCceeccCC--CCCCCCccceEecCCccc--cCcchhhccc-CeEEEEeccCcCCceehhhhhccCcc
Confidence            45566666665 444444333  333889999999932000  1125677765 4444444432222222222221   1


Q ss_pred             cccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecC-CCEEEEEeCCCc
Q psy3599         135 NHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD-ESLLATSDYQGL  212 (223)
Q Consensus       135 ~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~  212 (223)
                      .+...+  +++ .|+..    +.++|.+.|-|.++.|||+++...+.....+-+|...|..++|... -+.||+.|.||+
T Consensus       147 s~~~aP--lTSFDWne~----dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGS  220 (364)
T KOG0290|consen  147 SEFCAP--LTSFDWNEV----DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGS  220 (364)
T ss_pred             cccCCc--ccccccccC----CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCc
Confidence            222222  666 67765    8999999999999999999982112345677889999999999985 458999999999


Q ss_pred             EEEeeCCCCC
Q psy3599         213 IILWSREKHE  222 (223)
Q Consensus       213 i~iwd~~~~~  222 (223)
                      +|+||+|..+
T Consensus       221 vRmFDLR~le  230 (364)
T KOG0290|consen  221 VRMFDLRSLE  230 (364)
T ss_pred             EEEEEecccc
Confidence            9999998643

>KOG0268|consensus

Probab=99.20  E-value=7.4e-11  Score=91.68  Aligned_cols=115  Identities=17%  Similarity=0.305  Sum_probs=85.9

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCC
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSED  165 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~d  165 (223)
                      .-..|+|+       |+...+++++.|.  .+-.+|...-....... .+|.+.+  +...|+|     .|.-+++||.|
T Consensus       231 RTN~Iswn-------PeafnF~~a~ED~--nlY~~DmR~l~~p~~v~-~dhvsAV--~dVdfsp-----tG~EfvsgsyD  293 (433)
T KOG0268|consen  231 RTNTICWN-------PEAFNFVAANEDH--NLYTYDMRNLSRPLNVH-KDHVSAV--MDVDFSP-----TGQEFVSGSYD  293 (433)
T ss_pred             cccceecC-------ccccceeeccccc--cceehhhhhhcccchhh-cccceeE--EEeccCC-----Ccchhcccccc
Confidence            34568999       7888888888888  67777766444333333 3787774  4448999     59999999999


Q ss_pred             CcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         166 SCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       166 g~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      .+|+||.++.....+..++-.  -..|.||.|+.|..++++||.|+.|++|...
T Consensus       294 ksIRIf~~~~~~SRdiYhtkR--Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  294 KSIRIFPVNHGHSRDIYHTKR--MQHVFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             ceEEEeecCCCcchhhhhHhh--hheeeEEEEeccccEEEecCCCcceeeeecc
Confidence            999999998721122222222  2359999999999999999999999999754

>KOG0639|consensus

Probab=99.19  E-value=1.2e-10  Score=94.04  Aligned_cols=145  Identities=15%  Similarity=0.160  Sum_probs=107.9

Q ss_pred             ccccccCCcEEEEEECCCCceeeee----------------eeeecC---CCCeeEEEEeecccccCCCCeEEEEEeCCC
Q psy3599          53 NDQLRSTGVIVSILCDDLGRLSKGK----------------RLVLSQ---DCPITCLSWRSWISREARDPTLLVNIAANA  113 (223)
Q Consensus        53 ~~~~~~~~~i~~~~~~~~~~~~~~~----------------~~~~~~---~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~  113 (223)
                      ...+..++.|.++...++|+-+.+.                .++...   .-..++++.+       +|.++..+|..|+
T Consensus       459 Ldcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~s-------pDakvcFsccsdG  531 (705)
T KOG0639|consen  459 LDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-------PDAKVCFSCCSDG  531 (705)
T ss_pred             ccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcC-------CccceeeeeccCC
Confidence            3334567788888888877755332                111111   2355668888       8999888888788


Q ss_pred             eEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCE
Q psy3599         114 VCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPV  192 (223)
Q Consensus       114 ~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v  192 (223)
                        .|.|||+.+...++. | +||.+.   ..| ..++     +|..|-+|+-|.+|+.||++.   +..+.... -++.|
T Consensus       532 --nI~vwDLhnq~~Vrq-f-qGhtDG---ascIdis~-----dGtklWTGGlDntvRcWDlre---grqlqqhd-F~SQI  595 (705)
T KOG0639|consen  532 --NIAVWDLHNQTLVRQ-F-QGHTDG---ASCIDISK-----DGTKLWTGGLDNTVRCWDLRE---GRQLQQHD-FSSQI  595 (705)
T ss_pred             --cEEEEEcccceeeec-c-cCCCCC---ceeEEecC-----CCceeecCCCccceeehhhhh---hhhhhhhh-hhhhh
Confidence              799999998877765 4 599999   555 7888     899999999999999999998   55443332 35679


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         193 LGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       193 ~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      .++.++|.+..++.|=.++.+-+-....
T Consensus       596 fSLg~cP~~dWlavGMens~vevlh~sk  623 (705)
T KOG0639|consen  596 FSLGYCPTGDWLAVGMENSNVEVLHTSK  623 (705)
T ss_pred             eecccCCCccceeeecccCcEEEEecCC
Confidence            9999999999999998888777765543

>KOG1009|consensus

Probab=99.19  E-value=2e-10  Score=90.32  Aligned_cols=126  Identities=16%  Similarity=0.202  Sum_probs=103.0

Q ss_pred             eeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCC--------C-------ceEEeeeeecccc
Q psy3599          73 LSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKE--------G-------AVQLKRKFNVNHK  137 (223)
Q Consensus        73 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~--------~-------~~~~~~~~~~~h~  137 (223)
                      +.....+..| ...|+++.|+       ++|++|++|++++  .+.+|-..        +       ...+.... .+|.
T Consensus        55 V~y~s~Ls~H-~~aVN~vRf~-------p~gelLASg~D~g--~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~l-r~h~  123 (434)
T KOG1009|consen   55 VEYLSSLSRH-TRAVNVVRFS-------PDGELLASGGDGG--EVFLWKQGDVRIFDADTEADLNKEKWVVKKVL-RGHR  123 (434)
T ss_pred             EEEeecccCC-cceeEEEEEc-------CCcCeeeecCCCc--eEEEEEecCcCCccccchhhhCccceEEEEEe-cccc
Confidence            3333456666 9999999999       9999999999999  78888644        2       12333344 3788


Q ss_pred             CcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEee
Q psy3599         138 SSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWS  217 (223)
Q Consensus       138 ~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd  217 (223)
                      ..+  ...+|+|     ++.++++|+.|..+++||+..   +..+..+.+|...+..++|.|..+++++-+.|...+.++
T Consensus       124 ~di--ydL~Ws~-----d~~~l~s~s~dns~~l~Dv~~---G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~  193 (434)
T KOG1009|consen  124 DDI--YDLAWSP-----DSNFLVSGSVDNSVRLWDVHA---GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFS  193 (434)
T ss_pred             cch--hhhhccC-----CCceeeeeeccceEEEEEecc---ceeEeeccccccccceeecchhhhhhhhhccCcccceee
Confidence            886  5558999     899999999999999999999   999999999999999999999999999998888666665


Q ss_pred             CC
Q psy3599         218 RE  219 (223)
Q Consensus       218 ~~  219 (223)
                      +.
T Consensus       194 ~~  195 (434)
T KOG1009|consen  194 AK  195 (434)
T ss_pred             ee
Confidence            43

>KOG2110|consensus

Probab=99.16  E-value=1.6e-09  Score=84.48  Aligned_cols=115  Identities=17%  Similarity=0.280  Sum_probs=92.6

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEe--CCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIA--ANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVV  160 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~--~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~  160 (223)
                      ...+.++.++       +.+.+|+.-+  +.+  -|.+||..+-..+. .+ ..|.+.   +.+ +|++     +|.+|+
T Consensus       129 ~~gl~AlS~n-------~~n~ylAyp~s~t~G--dV~l~d~~nl~~v~-~I-~aH~~~---lAalafs~-----~G~llA  189 (391)
T KOG2110|consen  129 PKGLCALSPN-------NANCYLAYPGSTTSG--DVVLFDTINLQPVN-TI-NAHKGP---LAALAFSP-----DGTLLA  189 (391)
T ss_pred             ccceEeeccC-------CCCceEEecCCCCCc--eEEEEEcccceeee-EE-EecCCc---eeEEEECC-----CCCEEE
Confidence            4456666666       7777888533  455  78899988776555 34 489988   777 9999     899999


Q ss_pred             EecCCCc-EEEEEcccCcccccceeecccc--cCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         161 TGSEDSC-VYFLDIQSKEHKNAVNKLQGHA--CPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       161 sgs~dg~-v~iwd~~~~~~~~~~~~~~~h~--~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      |+|+.|+ |+++.+..   ++.++.|..-.  ..|.+++|+|++.+|++.|..++|.+|.+..
T Consensus       190 TASeKGTVIRVf~v~~---G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  190 TASEKGTVIRVFSVPE---GQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             EeccCceEEEEEEcCC---ccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            9999997 69999999   89898886432  3578999999999999999999999998864

>KOG2055|consensus

Probab=99.16  E-value=1.5e-09  Score=86.82  Aligned_cols=143  Identities=16%  Similarity=0.199  Sum_probs=110.7

Q ss_pred             cCCcEEEEEECCCCceeeee--------------------eeeecCCCCeeEEEEeecccccCCCCe-EEEEEeCCCeEE
Q psy3599          58 STGVIVSILCDDLGRLSKGK--------------------RLVLSQDCPITCLSWRSWISREARDPT-LLVNIAANAVCI  116 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~--------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~-~l~~~~~~~~~~  116 (223)
                      ..+.|.++.|.|+..++.++                    .+... ..||.+..|.       ++|. .+++++...  .
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~-~fPi~~a~f~-------p~G~~~i~~s~rrk--y  281 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE-KFPIQKAEFA-------PNGHSVIFTSGRRK--Y  281 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec-cCccceeeec-------CCCceEEEecccce--E
Confidence            45779999999866655433                    22223 6789999999       7887 777877777  7


Q ss_pred             EEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEE
Q psy3599         117 LKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGV  195 (223)
Q Consensus       117 v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v  195 (223)
                      +..||+.+.+...-....|+....  +.. ..+|     ++++|+..+..|.|.+-...+   ++.+.+++ -.+.|..+
T Consensus       282 ~ysyDle~ak~~k~~~~~g~e~~~--~e~FeVSh-----d~~fia~~G~~G~I~lLhakT---~eli~s~K-ieG~v~~~  350 (514)
T KOG2055|consen  282 LYSYDLETAKVTKLKPPYGVEEKS--MERFEVSH-----DSNFIAIAGNNGHIHLLHAKT---KELITSFK-IEGVVSDF  350 (514)
T ss_pred             EEEeeccccccccccCCCCcccch--hheeEecC-----CCCeEEEcccCceEEeehhhh---hhhhheee-eccEEeeE
Confidence            889999877544322223554333  444 5678     789999999999999999999   99999998 46779999


Q ss_pred             EEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         196 SFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       196 ~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      .|+.++..|+.++.+|.|.+||++..
T Consensus       351 ~fsSdsk~l~~~~~~GeV~v~nl~~~  376 (514)
T KOG2055|consen  351 TFSSDSKELLASGGTGEVYVWNLRQN  376 (514)
T ss_pred             EEecCCcEEEEEcCCceEEEEecCCc
Confidence            99999999988888999999999875

>KOG4328|consensus

Probab=99.16  E-value=3.2e-10  Score=90.49  Aligned_cols=128  Identities=16%  Similarity=0.199  Sum_probs=89.9

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEE---eeeeeccccCcceeEEE-eeecCccc
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQL---KRKFNVNHKSSKYQVRS-TFCPIMSF  153 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~---~~~~~~~h~~~~~~i~~-~~s~~~~~  153 (223)
                      ....+ .+.|++++|+|.     ....++++|...+  .|-+||+.+.+..   ...| ..|...   |.+ .|+|.   
T Consensus       181 v~kv~-~~Rit~l~fHPt-----~~~~lva~GdK~G--~VG~Wn~~~~~~d~d~v~~f-~~hs~~---Vs~l~F~P~---  245 (498)
T KOG4328|consen  181 VAKVT-DRRITSLAFHPT-----ENRKLVAVGDKGG--QVGLWNFGTQEKDKDGVYLF-TPHSGP---VSGLKFSPA---  245 (498)
T ss_pred             eeEec-ccceEEEEeccc-----CcceEEEEccCCC--cEEEEecCCCCCccCceEEe-ccCCcc---ccceEecCC---
Confidence            34555 889999999942     2336788888888  8999999422111   1133 478777   555 68886   


Q ss_pred             CCCcEEEEecCCCcEEEEEcccCc------------------------------------------ccccceeecccccC
Q psy3599         154 REGACVVTGSEDSCVYFLDIQSKE------------------------------------------HKNAVNKLQGHACP  191 (223)
Q Consensus       154 ~~~~~l~sgs~dg~v~iwd~~~~~------------------------------------------~~~~~~~~~~h~~~  191 (223)
                       +...+++.|.||+|++-|++..-                                          .+.....+.-|+..
T Consensus       246 -n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK  324 (498)
T KOG4328|consen  246 -NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK  324 (498)
T ss_pred             -ChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc
Confidence             67788888888888877765410                                          00111223457778


Q ss_pred             EEEEEEecC-CCEEEEEeCCCcEEEeeCCCC
Q psy3599         192 VLGVSFNYD-ESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       192 v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      |.+|+++|. ..+|||+|.|++++|||+|.-
T Consensus       325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l  355 (498)
T KOG4328|consen  325 ITSVALNPVCPWFLATASLDQTAKIWDLRQL  355 (498)
T ss_pred             cceeecCCCCchheeecccCcceeeeehhhh
Confidence            999999996 678999999999999999863

>KOG2919|consensus

Probab=99.15  E-value=4.4e-10  Score=86.38  Aligned_cols=118  Identities=16%  Similarity=0.220  Sum_probs=91.1

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecC-CCceE--EeeeeeccccCcceeEEE-eeecCcccCCCcEEEE
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAANAVCILKVLDK-EGAVQ--LKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVT  161 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~-~~~~~--~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~s  161 (223)
                      ...+++|+       +||.+|.+|-..   .|+++|. .+|..  +..++..+..+....+.| +|+|.    +...++.
T Consensus       160 aAhsL~Fs-------~DGeqlfaGykr---cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~----~~~~~a~  225 (406)
T KOG2919|consen  160 AAHSLQFS-------PDGEQLFAGYKR---CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPM----DSKTLAV  225 (406)
T ss_pred             hheeEEec-------CCCCeEeecccc---eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCC----CCcceee
Confidence            44589999       999999987544   5888887 34432  222221222333333777 89997    7889999


Q ss_pred             ecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEe-CCCcEEEeeCCC
Q psy3599         162 GSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSD-YQGLIILWSREK  220 (223)
Q Consensus       162 gs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s-~d~~i~iwd~~~  220 (223)
                      |+....+-|+.-..   +.++..+-+|.+.|+.++|.++|+.|.+|+ .|..|..||+|.
T Consensus       226 gsY~q~~giy~~~~---~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  226 GSYGQRVGIYNDDG---RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY  282 (406)
T ss_pred             ecccceeeeEecCC---CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence            99999988888887   788999999999999999999999999998 577899999986

>KOG2106|consensus

Probab=99.15  E-value=2.3e-09  Score=86.75  Aligned_cols=115  Identities=14%  Similarity=0.175  Sum_probs=91.1

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      ..++| +.....++..       |+..++++++.++  .+++|+ + .+.+...   .-...   ..| .|+|     .+
T Consensus       363 ~v~gh-~delwgla~h-------ps~~q~~T~gqdk--~v~lW~-~-~k~~wt~---~~~d~---~~~~~fhp-----sg  419 (626)
T KOG2106|consen  363 TVQGH-GDELWGLATH-------PSKNQLLTCGQDK--HVRLWN-D-HKLEWTK---IIEDP---AECADFHP-----SG  419 (626)
T ss_pred             EEEec-ccceeeEEcC-------CChhheeeccCcc--eEEEcc-C-CceeEEE---EecCc---eeEeeccC-----cc
Confidence            34456 6788888888       8999999999999  899999 2 2223221   12223   556 8999     46


Q ss_pred             cEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         157 ACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                       .++.|+..|...+.|.++   ...+..-.. ..+++++.|+|+|.+||.|+.|+.|+||-+..
T Consensus       420 -~va~Gt~~G~w~V~d~e~---~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~  478 (626)
T KOG2106|consen  420 -VVAVGTATGRWFVLDTET---QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA  478 (626)
T ss_pred             -eEEEeeccceEEEEeccc---ceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence             999999999999999998   666665555 78999999999999999999999999998754

>KOG0307|consensus

Probab=99.13  E-value=6.7e-11  Score=103.26  Aligned_cols=82  Identities=11%  Similarity=0.132  Sum_probs=54.0

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      ....| .++|..++|+      +..+.+|++|++++  .|.|||++.......   .+......-|.+ +|+..    ..
T Consensus       111 ~~~~h-~G~V~gLDfN------~~q~nlLASGa~~g--eI~iWDlnn~~tP~~---~~~~~~~~eI~~lsWNrk----vq  174 (1049)
T KOG0307|consen  111 TKSKH-TGPVLGLDFN------PFQGNLLASGADDG--EILIWDLNKPETPFT---PGSQAPPSEIKCLSWNRK----VS  174 (1049)
T ss_pred             hhccc-CCceeeeecc------ccCCceeeccCCCC--cEEEeccCCcCCCCC---CCCCCCcccceEeccchh----hh
Confidence            45566 8999999999      35566999999999  899999986433222   221111111555 67654    35


Q ss_pred             cEEEEecCCCcEEEEEccc
Q psy3599         157 ACVVTGSEDSCVYFLDIQS  175 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~  175 (223)
                      ..|++++.+|.+.|||++.
T Consensus       175 hILAS~s~sg~~~iWDlr~  193 (1049)
T KOG0307|consen  175 HILASGSPSGRAVIWDLRK  193 (1049)
T ss_pred             HHhhccCCCCCceeccccC
Confidence            5666666666777777665

>KOG1034|consensus

Probab=99.13  E-value=1.3e-10  Score=89.30  Aligned_cols=122  Identities=14%  Similarity=0.235  Sum_probs=93.4

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeee--ccccCcceeEEEeeecCcccCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFN--VNHKSSKYQVRSTFCPIMSFRE  155 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~--~~h~~~~~~i~~~~s~~~~~~~  155 (223)
                      .+.+| +..|+.|.+.      |...++|+++|.|.  .+++|+.++..++. .|.  -||++.+  +...|++     +
T Consensus       130 ~~~gh-G~sINeik~~------p~~~qlvls~SkD~--svRlwnI~~~~Cv~-VfGG~egHrdeV--LSvD~~~-----~  192 (385)
T KOG1034|consen  130 NYRGH-GGSINEIKFH------PDRPQLVLSASKDH--SVRLWNIQTDVCVA-VFGGVEGHRDEV--LSVDFSL-----D  192 (385)
T ss_pred             ceecc-CccchhhhcC------CCCCcEEEEecCCc--eEEEEeccCCeEEE-EecccccccCcE--EEEEEcC-----C
Confidence            56677 9999999999      35668899999999  99999999988775 332  3788885  5558999     7


Q ss_pred             CcEEEEecCCCcEEEEEcccCccc---ccc-------------------e---eecccccCEEEEEEecCCCEEEEEeCC
Q psy3599         156 GACVVTGSEDSCVYFLDIQSKEHK---NAV-------------------N---KLQGHACPVLGVSFNYDESLLATSDYQ  210 (223)
Q Consensus       156 ~~~l~sgs~dg~v~iwd~~~~~~~---~~~-------------------~---~~~~h~~~v~~v~~~~~~~~l~s~s~d  210 (223)
                      +..|++++.|.++++|++..+.-.   ++.                   .   +-.-|...|-|+.|  -|+++++-|.+
T Consensus       193 gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd~ilSksce  270 (385)
T KOG1034|consen  193 GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGDFILSKSCE  270 (385)
T ss_pred             CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--HhhheeecccC
Confidence            999999999999999999841100   111                   0   11246666666666  47889999999


Q ss_pred             CcEEEeeC
Q psy3599         211 GLIILWSR  218 (223)
Q Consensus       211 ~~i~iwd~  218 (223)
                      +.|..|..
T Consensus       271 naI~~w~p  278 (385)
T KOG1034|consen  271 NAIVCWKP  278 (385)
T ss_pred             ceEEEEec
Confidence            99999986

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.13  E-value=7.8e-09  Score=81.36  Aligned_cols=119  Identities=15%  Similarity=0.101  Sum_probs=81.1

Q ss_pred             CeeEEEEeecccccCCCCeEEEE-EeCCCeEEEEEecCCCceEEeeeeecc---ccCcceeEEEeeecCcccCCCcEE-E
Q psy3599          86 PITCLSWRSWISREARDPTLLVN-IAANAVCILKVLDKEGAVQLKRKFNVN---HKSSKYQVRSTFCPIMSFREGACV-V  160 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~-~~~~~~~~v~i~d~~~~~~~~~~~~~~---h~~~~~~i~~~~s~~~~~~~~~~l-~  160 (223)
                      .+..+.|+       +++.+|+. +..++  .+.+||..++..+.......   +..........|+|     ++..+ +
T Consensus       158 ~~~~~~~s-------~dg~~l~~~~~~~~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-----dg~~~~~  223 (300)
T TIGR03866       158 RPRFAEFT-------ADGKELWVSSEIGG--TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-----DGKTAFV  223 (300)
T ss_pred             CccEEEEC-------CCCCEEEEEcCCCC--EEEEEEcCcceeeeeeeecccccccccCCccceEECC-----CCCEEEE
Confidence            44568888       88887754 44577  78999999876554321001   11111113346888     67764 4


Q ss_pred             EecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEE-eCCCcEEEeeCCCCC
Q psy3599         161 TGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATS-DYQGLIILWSREKHE  222 (223)
Q Consensus       161 sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-s~d~~i~iwd~~~~~  222 (223)
                      +...++.+.+||.++   ++.+..+. +...+.+++|+|++..|+++ +.++.|++||+++++
T Consensus       224 ~~~~~~~i~v~d~~~---~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       224 ALGPANRVAVVDAKT---YEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             EcCCCCeEEEEECCC---CcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence            445567899999988   76665543 34578999999999998876 468999999998875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0642|consensus

Probab=99.12  E-value=1.3e-09  Score=89.04  Aligned_cols=146  Identities=14%  Similarity=0.238  Sum_probs=107.5

Q ss_pred             ccccCCcEEEEEECCCCceeeee----------------------------eeeecCCCCeeEEEEeecccccCCCCeEE
Q psy3599          55 QLRSTGVIVSILCDDLGRLSKGK----------------------------RLVLSQDCPITCLSWRSWISREARDPTLL  106 (223)
Q Consensus        55 ~~~~~~~i~~~~~~~~~~~~~~~----------------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l  106 (223)
                      |.+|.|.|.++.+..++....+.                            .+.+| .+.|+.++++       .....|
T Consensus       340 fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Gh-tdavw~l~~s-------~~~~~L  411 (577)
T KOG0642|consen  340 FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGH-TDAVWLLALS-------STKDRL  411 (577)
T ss_pred             EecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceecc-ccceeeeeec-------ccccce
Confidence            34677777777766644433222                            45677 8899999999       778889


Q ss_pred             EEEeCCCeEEEEEecCCCceEEeeeee-----------------ccccCcc-----------------------------
Q psy3599         107 VNIAANAVCILKVLDKEGAVQLKRKFN-----------------VNHKSSK-----------------------------  140 (223)
Q Consensus       107 ~~~~~~~~~~v~i~d~~~~~~~~~~~~-----------------~~h~~~~-----------------------------  140 (223)
                      ++|+.|+  ++++|+......  ..|.                 ..|....                             
T Consensus       412 lscs~Dg--Tvr~w~~~~~~~--~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~  487 (577)
T KOG0642|consen  412 LSCSSDG--TVRLWEPTEESP--CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPR  487 (577)
T ss_pred             eeecCCc--eEEeeccCCcCc--cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccc
Confidence            9999999  999998764432  1110                 0000000                             


Q ss_pred             --eeE-EEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEee
Q psy3599         141 --YQV-RSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWS  217 (223)
Q Consensus       141 --~~i-~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd  217 (223)
                        ..+ ...+.|     ...+.+++..|+.|+++|..+   ++++....+|...++++++.|+|.+|++++.|+.+++|.
T Consensus       488 ~~~~in~vVs~~-----~~~~~~~~hed~~Ir~~dn~~---~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k  559 (577)
T KOG0642|consen  488 RYPQINKVVSHP-----TADITFTAHEDRSIRFFDNKT---GKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK  559 (577)
T ss_pred             ccCccceEEecC-----CCCeeEecccCCceecccccc---cccchheeeccceecceeecCCCceEEeecCCceeehhh
Confidence              000 112333     678899999999999999999   999999999999999999999999999999999999998


Q ss_pred             CCC
Q psy3599         218 REK  220 (223)
Q Consensus       218 ~~~  220 (223)
                      +..
T Consensus       560 ld~  562 (577)
T KOG0642|consen  560 LDV  562 (577)
T ss_pred             ccc
Confidence            754

>KOG2111|consensus

Probab=99.11  E-value=5.2e-09  Score=80.29  Aligned_cols=107  Identities=17%  Similarity=0.269  Sum_probs=78.6

Q ss_pred             CCCeEEEEEe-CCCeEEEEEecCCCceE-EeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCc-EEEEEcccC
Q psy3599         101 RDPTLLVNIA-ANAVCILKVLDKEGAVQ-LKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSC-VYFLDIQSK  176 (223)
Q Consensus       101 ~~~~~l~~~~-~~~~~~v~i~d~~~~~~-~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~-v~iwd~~~~  176 (223)
                      .+..+||.=+ .-+  .+.+-|+..... ..... .+|...   |.| +.+-     +|.+++|+|..|+ |+|||..+ 
T Consensus       146 ~~k~~LafPg~k~G--qvQi~dL~~~~~~~p~~I-~AH~s~---Iacv~Ln~-----~Gt~vATaStkGTLIRIFdt~~-  213 (346)
T KOG2111|consen  146 SNKSLLAFPGFKTG--QVQIVDLASTKPNAPSII-NAHDSD---IACVALNL-----QGTLVATASTKGTLIRIFDTED-  213 (346)
T ss_pred             CCceEEEcCCCccc--eEEEEEhhhcCcCCceEE-EcccCc---eeEEEEcC-----CccEEEEeccCcEEEEEEEcCC-
Confidence            4445555433 223  455555543322 11122 488888   777 7777     7999999999997 79999999 


Q ss_pred             cccccceeecccc--cCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         177 EHKNAVNKLQGHA--CPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       177 ~~~~~~~~~~~h~--~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                        ++.+..+..-.  -.|.+++|+|+..+|+.+|..|++.||.++..
T Consensus       214 --g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  214 --GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             --CcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence              89888886422  36999999999999999999999999998764

>KOG4378|consensus

Probab=99.10  E-value=1e-09  Score=88.67  Aligned_cols=122  Identities=16%  Similarity=0.296  Sum_probs=97.6

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeecccc-CcceeEEE-eeecCcccCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHK-SSKYQVRS-TFCPIMSFRE  155 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~-~~~~~i~~-~~s~~~~~~~  155 (223)
                      .+..| ...|+++.|.       ....+|+++++++  -+-+..+.++..-. .|  +|. +..  ++. .|+|.    .
T Consensus       116 ~lkdh-~stvt~v~YN-------~~DeyiAsvs~gG--diiih~~~t~~~tt-~f--~~~sgqs--vRll~ys~s----k  176 (673)
T KOG4378|consen  116 FLKDH-QSTVTYVDYN-------NTDEYIASVSDGG--DIIIHGTKTKQKTT-TF--TIDSGQS--VRLLRYSPS----K  176 (673)
T ss_pred             hccCC-cceeEEEEec-------CCcceeEEeccCC--cEEEEecccCcccc-ce--ecCCCCe--EEEeecccc----c
Confidence            45667 7999999999       8899999999988  67777777774433 33  333 333  655 79986    5


Q ss_pred             CcEEEEecCCCcEEEEEcccCcccccce-eecccccCEEEEEEecC-CCEEEEEeCCCcEEEeeCCCC
Q psy3599         156 GACVVTGSEDSCVYFLDIQSKEHKNAVN-KLQGHACPVLGVSFNYD-ESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       156 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      ..+|.+++.+|.|.+||+..   ..++. ..+.|+-+...|+|+|. ..+|++.+.|+.|.+||.+..
T Consensus       177 r~lL~~asd~G~VtlwDv~g---~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~  241 (673)
T KOG4378|consen  177 RFLLSIASDKGAVTLWDVQG---MSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ  241 (673)
T ss_pred             ceeeEeeccCCeEEEEeccC---CCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence            77889999999999999998   55554 45679999999999995 678999999999999998753

>KOG2048|consensus

Probab=99.10  E-value=4.1e-09  Score=87.86  Aligned_cols=118  Identities=10%  Similarity=0.205  Sum_probs=104.1

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEe
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTG  162 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sg  162 (223)
                      ..+|.+++|+       .....||.+-.++  .+.+|++..+......+. ++.+..  +.. +|++      +..|++.
T Consensus        25 Ps~I~slA~s-------~kS~~lAvsRt~g--~IEiwN~~~~w~~~~vi~-g~~drs--IE~L~W~e------~~RLFS~   86 (691)
T KOG2048|consen   25 PSEIVSLAYS-------HKSNQLAVSRTDG--NIEIWNLSNNWFLEPVIH-GPEDRS--IESLAWAE------GGRLFSS   86 (691)
T ss_pred             ccceEEEEEe-------ccCCceeeeccCC--cEEEEccCCCceeeEEEe-cCCCCc--eeeEEEcc------CCeEEee
Confidence            8899999999       8888899888888  899999999988887775 777776  777 8986      7788889


Q ss_pred             cCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         163 SEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       163 s~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +.+|.|.-||+.+   .+.++.+..-.+.|++++.+|.+..++.|+.||.+..++...++
T Consensus        87 g~sg~i~EwDl~~---lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~  143 (691)
T KOG2048|consen   87 GLSGSITEWDLHT---LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK  143 (691)
T ss_pred             cCCceEEEEeccc---CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCce
Confidence            9999999999999   89999998888999999999999999999999988887776553

>KOG0974|consensus

Probab=99.09  E-value=1.1e-09  Score=94.99  Aligned_cols=119  Identities=13%  Similarity=0.183  Sum_probs=101.0

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCc
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGA  157 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~  157 (223)
                      .+.+| ++.|.++.|+       .||.++++.|+|.  .+|+|++++.+.+.... .+|+..+  ..++|.|     +  
T Consensus       170 ~l~GH-eG~iF~i~~s-------~dg~~i~s~SdDR--siRlW~i~s~~~~~~~~-fgHsaRv--w~~~~~~-----n--  229 (967)
T KOG0974|consen  170 RLKGH-EGSIFSIVTS-------LDGRYIASVSDDR--SIRLWPIDSREVLGCTG-FGHSARV--WACCFLP-----N--  229 (967)
T ss_pred             eeccc-CCceEEEEEc-------cCCcEEEEEecCc--ceeeeecccccccCccc-cccccee--EEEEecc-----c--
Confidence            46677 9999999999       9999999999999  99999999887776322 4899987  6678877     3  


Q ss_pred             EEEEecCCCcEEEEEcccCcccccceeeccccc-CEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         158 CVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHAC-PVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       158 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~-~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      .++++++|.++++|+..-    ..+..+++|.. .++.++..++...++|++.|+.+++||+..
T Consensus       230 ~i~t~gedctcrvW~~~~----~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  230 RIITVGEDCTCRVWGVNG----TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eeEEeccceEEEEEeccc----ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            999999999999997665    34557777765 689999999999999999999999999754

>KOG1188|consensus

Probab=99.09  E-value=2.9e-09  Score=82.30  Aligned_cols=175  Identities=15%  Similarity=0.218  Sum_probs=114.3

Q ss_pred             HHHhhhhhhhhhccCCCccccccccc--cCCcEEEEEECCCCceeeee--------eeeecCCCCeeEEEEeecccccCC
Q psy3599          32 YIRRRNQLLRENSATTSDQLRNDQLR--STGVIVSILCDDLGRLSKGK--------RLVLSQDCPITCLSWRSWISREAR  101 (223)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~--------~~~~~~~~~i~~l~~~~~~~~~~~  101 (223)
                      |...+.+.+.+.++.........+++  ..+.|.+++-|...+++...        .+..+.+.+-.+++-.       .
T Consensus        55 yd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~n-------c  127 (376)
T KOG1188|consen   55 YDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLN-------C  127 (376)
T ss_pred             EeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeecc-------C
Confidence            44444555555555442222233333  34556666666666666544        2222322355555554       4


Q ss_pred             CCeEEEEEeC--CCeEEEEEecCCCceE-EeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCc
Q psy3599         102 DPTLLVNIAA--NAVCILKVLDKEGAVQ-LKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKE  177 (223)
Q Consensus       102 ~~~~l~~~~~--~~~~~v~i~d~~~~~~-~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~  177 (223)
                      .+.+++++..  .....+.+||....++ +..... .|...   |++ .|+|.    +.++|+|||.||.|.+||+...+
T Consensus       128 k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e-SH~DD---VT~lrFHP~----~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  128 KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE-SHNDD---VTQLRFHPS----DPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             cCCeEEeccccccCceEEEEEEeccccchhhhhhh-hccCc---ceeEEecCC----CCCeEEeecccceEEeeecCCCc
Confidence            6677777762  2233788999987776 554444 89888   555 79997    89999999999999999998722


Q ss_pred             ccc-cceeecccccCEEEEEEecCC-CEEEEEeCCCcEEEeeCCCCC
Q psy3599         178 HKN-AVNKLQGHACPVLGVSFNYDE-SLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       178 ~~~-~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .-. ++..+. |...|.++.|..++ ..+.+-+..++..+|+++.+.
T Consensus       200 EeDaL~~viN-~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  200 EEDALLHVIN-HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             chhhHHHhhc-ccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence            122 334444 77789999998875 357778889999999998764

>KOG0649|consensus

Probab=99.08  E-value=8.5e-09  Score=76.60  Aligned_cols=115  Identities=16%  Similarity=0.236  Sum_probs=79.6

Q ss_pred             CCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecC
Q psy3599          85 CPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE  164 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~  164 (223)
                      ..|+++...      |..+.+|..+ .|+  .+..||+++|.... .+ .||++-   +.+.....    ....+++|++
T Consensus       115 PeINam~ld------P~enSi~~Ag-GD~--~~y~~dlE~G~i~r-~~-rGHtDY---vH~vv~R~----~~~qilsG~E  176 (325)
T KOG0649|consen  115 PEINAMWLD------PSENSILFAG-GDG--VIYQVDLEDGRIQR-EY-RGHTDY---VHSVVGRN----ANGQILSGAE  176 (325)
T ss_pred             CccceeEec------cCCCcEEEec-CCe--EEEEEEecCCEEEE-EE-cCCcce---eeeeeecc----cCcceeecCC
Confidence            467788887      3455555555 556  67788999996555 55 499999   66633321    3667999999


Q ss_pred             CCcEEEEEcccCcccccceeecccc----------cCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCCC
Q psy3599         165 DSCVYFLDIQSKEHKNAVNKLQGHA----------CPVLGVSFNYDESLLATSDYQGLIILWSREKHEP  223 (223)
Q Consensus       165 dg~v~iwd~~~~~~~~~~~~~~~h~----------~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~  223 (223)
                      ||++++||.++   ++++..+...+          ..|.+++-  +...+++|+ ...+.+|.++..++
T Consensus       177 DGtvRvWd~kt---~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~  239 (325)
T KOG0649|consen  177 DGTVRVWDTKT---QKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSES  239 (325)
T ss_pred             CccEEEEeccc---cceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCc
Confidence            99999999999   77766653221          23555544  556676665 67799999998664

>KOG4227|consensus

Probab=99.07  E-value=5.5e-09  Score=82.42  Aligned_cols=155  Identities=14%  Similarity=0.132  Sum_probs=114.1

Q ss_pred             ccccccccccCCcEEEEEECCCCceeeee-----------------------ee-eecCCCCeeEEEEeecccccCCCCe
Q psy3599          49 DQLRNDQLRSTGVIVSILCDDLGRLSKGK-----------------------RL-VLSQDCPITCLSWRSWISREARDPT  104 (223)
Q Consensus        49 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------------------~~-~~~~~~~i~~l~~~~~~~~~~~~~~  104 (223)
                      +.+.+..++|.|.|.++.|+.+++++...                       .+ ..|+...|.|++|.       ....
T Consensus        46 ~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~-------~~N~  118 (609)
T KOG4227|consen   46 PFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFD-------LENR  118 (609)
T ss_pred             chhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEc-------cCCe
Confidence            45566777899999999999988877554                       12 22435789999999       8889


Q ss_pred             EEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcc-cccc
Q psy3599         105 LLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEH-KNAV  182 (223)
Q Consensus       105 ~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~-~~~~  182 (223)
                      +|.+|..++  ++-+.|+++.+.+..   ..|......+.- ..+|     ..+.+++.+.++.|.+||.+..++ ++++
T Consensus       119 ~~~SG~~~~--~VI~HDiEt~qsi~V---~~~~~~~~~VY~m~~~P-----~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~  188 (609)
T KOG4227|consen  119 FLYSGERWG--TVIKHDIETKQSIYV---ANENNNRGDVYHMDQHP-----TDNTLIVVTRAKLVSFIDNRDRQNPISLV  188 (609)
T ss_pred             eEecCCCcc--eeEeeecccceeeee---ecccCcccceeecccCC-----CCceEEEEecCceEEEEeccCCCCCCcee
Confidence            999999888  888889998877754   356553222333 5677     478888999999999999987331 2222


Q ss_pred             eeecccccCEEEEEEecC-CCEEEEEeCCCcEEEeeCCCC
Q psy3599         183 NKLQGHACPVLGVSFNYD-ESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       183 ~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      ..-. ....-.++.|+|. ..+|++++..+-+.+||.+..
T Consensus       189 ~~AN-~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  189 LPAN-SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ  227 (609)
T ss_pred             eecC-CCccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence            2222 2345678899997 567888999999999999864

>KOG2055|consensus

Probab=99.07  E-value=3.3e-09  Score=84.93  Aligned_cols=132  Identities=12%  Similarity=0.202  Sum_probs=99.5

Q ss_pred             EECC-CCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEE
Q psy3599          66 LCDD-LGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVR  144 (223)
Q Consensus        66 ~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~  144 (223)
                      +||- .+++.......++....+..+..+       +++.+|+..+..+  .|.+....+++.+...   .-.+.   +.
T Consensus       284 syDle~ak~~k~~~~~g~e~~~~e~FeVS-------hd~~fia~~G~~G--~I~lLhakT~eli~s~---KieG~---v~  348 (514)
T KOG2055|consen  284 SYDLETAKVTKLKPPYGVEEKSMERFEVS-------HDSNFIAIAGNNG--HIHLLHAKTKELITSF---KIEGV---VS  348 (514)
T ss_pred             EeeccccccccccCCCCcccchhheeEec-------CCCCeEEEcccCc--eEEeehhhhhhhhhee---eeccE---Ee
Confidence            4554 445545445555555678888888       9999999999888  7888888888665542   22333   55


Q ss_pred             E-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeeccccc-CEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         145 S-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHAC-PVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       145 ~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~-~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      . +|+.     ++..|++.+.+|.|++||++.   ..+++.+..... .-++++.++++.+||+||..|.|.|||..+
T Consensus       349 ~~~fsS-----dsk~l~~~~~~GeV~v~nl~~---~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  349 DFTFSS-----DSKELLASGGTGEVYVWNLRQ---NSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             eEEEec-----CCcEEEEEcCCceEEEEecCC---cceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence            5 7886     789999999999999999999   888888864322 235667778999999999999999999653

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.07  E-value=5.8e-10  Score=60.40  Aligned_cols=38  Identities=24%  Similarity=0.587  Sum_probs=36.3

Q ss_pred             ccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEee
Q psy3599         180 NAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWS  217 (223)
Q Consensus       180 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd  217 (223)
                      +++..+++|...|.+++|+|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            57888999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1523|consensus

Probab=99.06  E-value=3.7e-09  Score=81.19  Aligned_cols=123  Identities=13%  Similarity=0.143  Sum_probs=91.2

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecC-CCceEEeeeeeccccCcceeEEE-eeecCcccCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDK-EGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFRE  155 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~-~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~  155 (223)
                      .+..| ...|+.++|+       +.++.|++|+.|.  --.+|.. +.+.-.....-..+...   .++ .|+|     .
T Consensus        50 tls~H-d~~vtgvdWa-------p~snrIvtcs~dr--nayVw~~~~~~~WkptlvLlRiNrA---At~V~WsP-----~  111 (361)
T KOG1523|consen   50 TLSEH-DKIVTGVDWA-------PKSNRIVTCSHDR--NAYVWTQPSGGTWKPTLVLLRINRA---ATCVKWSP-----K  111 (361)
T ss_pred             ehhhh-CcceeEEeec-------CCCCceeEccCCC--CccccccCCCCeeccceeEEEeccc---eeeEeecC-----c
Confidence            56667 8899999999       8899999999776  5667887 33322221111344444   566 7999     7


Q ss_pred             CcEEEEecCCCcEEEEEcccCccc-ccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeC
Q psy3599         156 GACVVTGSEDSCVYFLDIQSKEHK-NAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       156 ~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      ++.++.||.-..|.+|-++..++- -....-+.+++.|.+++|+|+.-+|+.||.|+..|++..
T Consensus       112 enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSa  175 (361)
T KOG1523|consen  112 ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA  175 (361)
T ss_pred             CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEE
Confidence            999999999999999988762110 011233557889999999999999999999999999863

>KOG0307|consensus

Probab=99.06  E-value=1.1e-09  Score=95.94  Aligned_cols=120  Identities=14%  Similarity=0.301  Sum_probs=95.1

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEe-CCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecC
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIA-ANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE  164 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~  164 (223)
                      .+..+.|+      |.+...|++++ +|+...|.+||+..-.....++ .+|...+  +...|++.    |..+++|++.
T Consensus       208 ~~S~l~Wh------P~~aTql~~As~dd~~PviqlWDlR~assP~k~~-~~H~~Gi--lslsWc~~----D~~lllSsgk  274 (1049)
T KOG0307|consen  208 HCSVLAWH------PDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL-EGHQRGI--LSLSWCPQ----DPRLLLSSGK  274 (1049)
T ss_pred             ceeeeeeC------CCCceeeeeecCCCCCceeEeecccccCCchhhh-cccccce--eeeccCCC----CchhhhcccC
Confidence            36678888      24445555555 6667789999976433333344 3898885  55589996    7799999999


Q ss_pred             CCcEEEEEcccCcccccceeecccccCEEEEEEecCC-CEEEEEeCCCcEEEeeCCCC
Q psy3599         165 DSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDE-SLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       165 dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~d~~i~iwd~~~~  221 (223)
                      |+.|.+|+.++   ++.+..+....+.+..+.|+|.. ..++.++.||.|-|+.+...
T Consensus       275 D~~ii~wN~~t---gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  275 DNRIICWNPNT---GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             CCCeeEecCCC---ceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence            99999999999   99999999888899999999974 48899999999999998653

>KOG1310|consensus

Probab=99.06  E-value=9.3e-10  Score=89.95  Aligned_cols=152  Identities=14%  Similarity=0.188  Sum_probs=104.6

Q ss_pred             cccccCCcEEEEEECCCCceeeee-------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCe
Q psy3599          54 DQLRSTGVIVSILCDDLGRLSKGK-------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAV  114 (223)
Q Consensus        54 ~~~~~~~~i~~~~~~~~~~~~~~~-------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~  114 (223)
                      ...||.|.|.++.|+.+|.++.++                   .-++| ...|.+++|.|.     ....++++|+.|. 
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgH-taNIFsvKFvP~-----tnnriv~sgAgDk-  117 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGH-TANIFSVKFVPY-----TNNRIVLSGAGDK-  117 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccc-ccceeEEeeecc-----CCCeEEEeccCcc-
Confidence            345899999999999999988665                   22345 788999999943     4567788888888 


Q ss_pred             EEEEEecCCCce---------EEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcc----ccc
Q psy3599         115 CILKVLDKEGAV---------QLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEH----KNA  181 (223)
Q Consensus       115 ~~v~i~d~~~~~---------~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~----~~~  181 (223)
                       .|+++|+....         .....+ ..|...+  -+.+-.|.    ..+.+.++++||+++.+|++...+    ..+
T Consensus       118 -~i~lfdl~~~~~~~~d~~~~~~~~~~-~cht~rV--Kria~~p~----~PhtfwsasEDGtirQyDiREph~c~p~~~~  189 (758)
T KOG1310|consen  118 -LIKLFDLDSSKEGGMDHGMEETTRCW-SCHTDRV--KRIATAPN----GPHTFWSASEDGTIRQYDIREPHVCNPDEDC  189 (758)
T ss_pred             -eEEEEecccccccccccCccchhhhh-hhhhhhh--hheecCCC----CCceEEEecCCcceeeecccCCccCCccccc
Confidence             89999987421         111122 3565553  33345563    358999999999999999987210    001


Q ss_pred             ---ceeecccccCEEEEEEecC-CCEEEEEeCCCcEEEeeCCC
Q psy3599         182 ---VNKLQGHACPVLGVSFNYD-ESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       182 ---~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~  220 (223)
                         +..+...--...|+..+|. ..+|+.|+.|-.+++||.|.
T Consensus       190 ~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr  232 (758)
T KOG1310|consen  190 PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR  232 (758)
T ss_pred             cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence               1111111224568888986 67899999999999999654

>KOG0280|consensus

Probab=99.05  E-value=4.7e-09  Score=79.79  Aligned_cols=118  Identities=17%  Similarity=0.192  Sum_probs=85.0

Q ss_pred             eeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEee--eeeccccCcceeEEEeeecCcccCCCcEEEEecC
Q psy3599          87 ITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKR--KFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE  164 (223)
Q Consensus        87 i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~--~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~  164 (223)
                      ..++.|+       ..+..++++..++  .+.+-+.... .+.+  .+ +.|..+.  ..+.|+..    +.+++++|+.
T Consensus       124 ~lslD~~-------~~~~~i~vs~s~G--~~~~v~~t~~-~le~vq~w-k~He~E~--Wta~f~~~----~pnlvytGgD  186 (339)
T KOG0280|consen  124 ALSLDIS-------TSGTKIFVSDSRG--SISGVYETEM-VLEKVQTW-KVHEFEA--WTAKFSDK----EPNLVYTGGD  186 (339)
T ss_pred             eeEEEee-------ccCceEEEEcCCC--cEEEEeccee-eeeecccc-cccceee--eeeecccC----CCceEEecCC
Confidence            4467888       6677777766655  4543333222 2332  34 3787774  44467765    6899999999


Q ss_pred             CCcEEEEEcccCccccccee-ecccccCEEEEEEecC-CCEEEEEeCCCcEEEeeCCC-CCC
Q psy3599         165 DSCVYFLDIQSKEHKNAVNK-LQGHACPVLGVSFNYD-ESLLATSDYQGLIILWSREK-HEP  223 (223)
Q Consensus       165 dg~v~iwd~~~~~~~~~~~~-~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~-~~~  223 (223)
                      |+.+..||++. + ++.+.. .+.|...|.++..+|. +.+++||+.|..|++||.|+ ++|
T Consensus       187 D~~l~~~D~R~-p-~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP  246 (339)
T KOG0280|consen  187 DGSLSCWDIRI-P-KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP  246 (339)
T ss_pred             CceEEEEEecC-C-cceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence            99999999994 2 444444 5678999999999874 88999999999999999994 554

>KOG2394|consensus

Probab=99.03  E-value=2.7e-09  Score=86.98  Aligned_cols=68  Identities=22%  Similarity=0.424  Sum_probs=62.3

Q ss_pred             eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         146 TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       146 ~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      +|+|     |+.+|++-|.||+++|||+.+   .+++...+..-+...|++|+|||.+|++|+.|.-|.+|.....
T Consensus       297 ~FS~-----DG~~LA~VSqDGfLRvF~fdt---~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er  364 (636)
T KOG2394|consen  297 AFSP-----DGKYLATVSQDGFLRIFDFDT---QELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER  364 (636)
T ss_pred             eEcC-----CCceEEEEecCceEEEeeccH---HHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc
Confidence            6788     899999999999999999999   8888888877788999999999999999999999999987543

>KOG3881|consensus

Probab=99.02  E-value=3.8e-09  Score=82.97  Aligned_cols=116  Identities=13%  Similarity=0.212  Sum_probs=94.4

Q ss_pred             CeeEEEEeecccccCCC--CeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEe
Q psy3599          86 PITCLSWRSWISREARD--PTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTG  162 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~--~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sg  162 (223)
                      -++++.|.       +.  ...|+++..-+  .+++||...+......|. -....   +.+ ...|     .++++++|
T Consensus       204 W~tdi~Fl-------~g~~~~~fat~T~~h--qvR~YDt~~qRRPV~~fd-~~E~~---is~~~l~p-----~gn~Iy~g  265 (412)
T KOG3881|consen  204 WITDIRFL-------EGSPNYKFATITRYH--QVRLYDTRHQRRPVAQFD-FLENP---ISSTGLTP-----SGNFIYTG  265 (412)
T ss_pred             eeccceec-------CCCCCceEEEEecce--eEEEecCcccCcceeEec-cccCc---ceeeeecC-----CCcEEEEe
Confidence            45578887       44  77899998877  899999987765554443 22222   666 6777     79999999


Q ss_pred             cCCCcEEEEEcccCccccccee-ecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         163 SEDSCVYFLDIQSKEHKNAVNK-LQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       163 s~dg~v~iwd~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ..-|.+..||.+.   +..+.. +++..+.|+++..+|...+++++|-|..|||+|+.+.+
T Consensus       266 n~~g~l~~FD~r~---~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  266 NTKGQLAKFDLRG---GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK  323 (412)
T ss_pred             cccchhheecccC---ceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence            9999999999999   776655 89999999999999999999999999999999998743

>KOG2110|consensus

Probab=99.00  E-value=1.4e-08  Score=79.33  Aligned_cols=118  Identities=20%  Similarity=0.255  Sum_probs=81.9

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEE-e
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVT-G  162 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~s-g  162 (223)
                      ..+|.++.+.         .+.|+++-.+.   +.|||++.-+.+.+.-. -..+..  =-|+++|..   .+.+++- +
T Consensus        87 pt~IL~VrmN---------r~RLvV~Lee~---IyIydI~~MklLhTI~t-~~~n~~--gl~AlS~n~---~n~ylAyp~  148 (391)
T KOG2110|consen   87 PTSILAVRMN---------RKRLVVCLEES---IYIYDIKDMKLLHTIET-TPPNPK--GLCALSPNN---ANCYLAYPG  148 (391)
T ss_pred             CCceEEEEEc---------cceEEEEEccc---EEEEecccceeehhhhc-cCCCcc--ceEeeccCC---CCceEEecC
Confidence            4566666665         44555555544   67889887766654322 111111  123555521   2335543 3


Q ss_pred             cC-CCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCc-EEEeeCCCCC
Q psy3599         163 SE-DSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGL-IILWSREKHE  222 (223)
Q Consensus       163 s~-dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~-i~iwd~~~~~  222 (223)
                      +. .|.|.+||..+   .+++..+.+|++.+.+++|+++|.+|||+|..|+ ||++.+..|+
T Consensus       149 s~t~GdV~l~d~~n---l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~  207 (391)
T KOG2110|consen  149 STTSGDVVLFDTIN---LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ  207 (391)
T ss_pred             CCCCceEEEEEccc---ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCcc
Confidence            33 58999999999   8999999999999999999999999999999999 5899987764

>KOG0771|consensus

Probab=98.98  E-value=5.1e-09  Score=82.83  Aligned_cols=111  Identities=14%  Similarity=0.316  Sum_probs=87.2

Q ss_pred             eEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCC
Q psy3599          88 TCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDS  166 (223)
Q Consensus        88 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg  166 (223)
                      ..++|+       .+|..+++++.|+  ++|+|+..+-..+...  ..|...   |.. .|+|     |+++|++-+.| 
T Consensus       148 k~vaf~-------~~gs~latgg~dg--~lRv~~~Ps~~t~l~e--~~~~~e---V~DL~FS~-----dgk~lasig~d-  207 (398)
T KOG0771|consen  148 KVVAFN-------GDGSKLATGGTDG--TLRVWEWPSMLTILEE--IAHHAE---VKDLDFSP-----DGKFLASIGAD-  207 (398)
T ss_pred             eEEEEc-------CCCCEeeeccccc--eEEEEecCcchhhhhh--HhhcCc---cccceeCC-----CCcEEEEecCC-
Confidence            678998       9999999999999  9999996555444433  578888   777 8999     89999999999 


Q ss_pred             cEEEEEcccCcccccceee-------------------------------------------cc-----------cccCE
Q psy3599         167 CVYFLDIQSKEHKNAVNKL-------------------------------------------QG-----------HACPV  192 (223)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~-------------------------------------------~~-----------h~~~v  192 (223)
                      ..+||+.++   +.++...                                           ..           -...|
T Consensus       208 ~~~VW~~~~---g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~si  284 (398)
T KOG0771|consen  208 SARVWSVNT---GAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSI  284 (398)
T ss_pred             ceEEEEecc---CchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcc
Confidence            899999987   3111000                                           00           01258


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         193 LGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       193 ~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      ++++.+++|.+++.|+.||.|-|++..+-
T Consensus       285 Ssl~VS~dGkf~AlGT~dGsVai~~~~~l  313 (398)
T KOG0771|consen  285 SSLAVSDDGKFLALGTMDGSVAIYDAKSL  313 (398)
T ss_pred             eeEEEcCCCcEEEEeccCCcEEEEEecee
Confidence            99999999999999999999999997653

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.97  E-value=1.1e-07  Score=77.20  Aligned_cols=142  Identities=25%  Similarity=0.464  Sum_probs=103.1

Q ss_pred             ccCCcEEEEEECCCCceeeee-------------------eeeecCCCCeeEEEEeecccccCCCCe-EEEEEeCCCeEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK-------------------RLVLSQDCPITCLSWRSWISREARDPT-LLVNIAANAVCI  116 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~-------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~-~l~~~~~~~~~~  116 (223)
                      .|...|..+.+.++++.+...                   .+..| ...|.+++|+       +++. ++++++.++  .
T Consensus       153 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~-------~~~~~~~~~~~~d~--~  222 (466)
T COG2319         153 GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH-TDPVSSLAFS-------PDGGLLIASGSSDG--T  222 (466)
T ss_pred             cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC-CCceEEEEEc-------CCcceEEEEecCCC--c
Confidence            566667777777755432111                   22223 7899999999       7877 555657777  6


Q ss_pred             EEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCccccc-ceeecccccCEEE
Q psy3599         117 LKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNA-VNKLQGHACPVLG  194 (223)
Q Consensus       117 v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~-~~~~~~h~~~v~~  194 (223)
                      +++||...+..+...+ .+|...   . . .|+|     ++..+++++.|+.+++|+...   ... +..+..|...+.+
T Consensus       223 i~~wd~~~~~~~~~~~-~~~~~~---~-~~~~~~-----~~~~~~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~~v~~  289 (466)
T COG2319         223 IRLWDLSTGKLLRSTL-SGHSDS---V-VSSFSP-----DGSLLASGSSDGTIRLWDLRS---SSSLLRTLSGHSSSVLS  289 (466)
T ss_pred             EEEEECCCCcEEeeec-CCCCcc---e-eEeECC-----CCCEEEEecCCCcEEEeeecC---CCcEEEEEecCCccEEE
Confidence            7799877665554233 377666   3 3 6888     568888999999999999997   333 4444678889999


Q ss_pred             EEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         195 VSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       195 v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      +.|+|++..+++++.|+.+++||.++.
T Consensus       290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~  316 (466)
T COG2319         290 VAFSPDGKLLASGSSDGTVRLWDLETG  316 (466)
T ss_pred             EEECCCCCEEEEeeCCCcEEEEEcCCC
Confidence            999998888888888988999988764

>KOG1523|consensus

Probab=98.97  E-value=1.1e-08  Score=78.63  Aligned_cols=119  Identities=22%  Similarity=0.240  Sum_probs=94.7

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCce--EEeeeeeccccCcceeEEE-eeecCcccCCCcEEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAV--QLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVV  160 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~--~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~  160 (223)
                      ..+|+|.+|+       +|+..++.+..+.  .+.||......  ....++ ..|...   +++ +|+|     ..+.|+
T Consensus        10 ~~pitchAwn-------~drt~iAv~~~~~--evhiy~~~~~~~w~~~htl-s~Hd~~---vtgvdWap-----~snrIv   71 (361)
T KOG1523|consen   10 LEPITCHAWN-------SDRTQIAVSPNNH--EVHIYSMLGADLWEPAHTL-SEHDKI---VTGVDWAP-----KSNRIV   71 (361)
T ss_pred             cCceeeeeec-------CCCceEEeccCCc--eEEEEEecCCCCceeceeh-hhhCcc---eeEEeecC-----CCCcee
Confidence            6799999999       9999999998887  77887765443  233344 266666   666 8999     689999


Q ss_pred             EecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         161 TGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       161 sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      +++.|.--++|.....+.-++...+..++..+++|.|+|.++.||+||....|.+|-++.
T Consensus        72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~  131 (361)
T KOG1523|consen   72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ  131 (361)
T ss_pred             EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence            999999999999854222345566677899999999999999999999999999987654

>KOG1524|consensus

Probab=98.96  E-value=6.1e-09  Score=85.06  Aligned_cols=128  Identities=15%  Similarity=0.189  Sum_probs=85.1

Q ss_pred             ccCCcEEEEEECCCCceeeee----------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEe
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK----------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVL  120 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~----------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~  120 (223)
                      .|.+.+.+..|+++|.-+.+.                ........+|+|++|.       |++.-++-|..+.+ .++-.
T Consensus       102 AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~-------p~S~~vl~c~g~h~-~IKpL  173 (737)
T KOG1524|consen  102 AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWA-------PNSNSIVFCQGGHI-SIKPL  173 (737)
T ss_pred             hhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEEC-------CCCCceEEecCCeE-EEeec
Confidence            366677777777755433222                1123347799999999       66666665554442 44443


Q ss_pred             cCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecC
Q psy3599         121 DKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD  200 (223)
Q Consensus       121 d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~  200 (223)
                      ..+.. .+.  + ..|.+.+  +.+.|++     ..+++++|++|-..++||...    ..+..-..|+.+|++++|+|+
T Consensus       174 ~~n~k-~i~--W-kAHDGii--L~~~W~~-----~s~lI~sgGED~kfKvWD~~G----~~Lf~S~~~ey~ITSva~npd  238 (737)
T KOG1524|consen  174 AANSK-IIR--W-RAHDGLV--LSLSWST-----QSNIIASGGEDFRFKIWDAQG----ANLFTSAAEEYAITSVAFNPE  238 (737)
T ss_pred             ccccc-eeE--E-eccCcEE--EEeecCc-----cccceeecCCceeEEeecccC----cccccCChhccceeeeeeccc
Confidence            33322 332  2 4898886  6669999     699999999999999999765    455555667778888888887


Q ss_pred             CCEEEEEe
Q psy3599         201 ESLLATSD  208 (223)
Q Consensus       201 ~~~l~s~s  208 (223)
                       ..++.+|
T Consensus       239 -~~~~v~S  245 (737)
T KOG1524|consen  239 -KDYLLWS  245 (737)
T ss_pred             -cceeeee
Confidence             4455555

>KOG2106|consensus

Probab=98.95  E-value=8e-08  Score=78.08  Aligned_cols=113  Identities=17%  Similarity=0.328  Sum_probs=88.2

Q ss_pred             CCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEE
Q psy3599          83 QDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVT  161 (223)
Q Consensus        83 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~s  161 (223)
                      ...++.|+.|+       |.| .++.|...+  .|.+.|.++...+ ...  .. +..  +.+ .|+|     +|.+|+.
T Consensus       406 ~~d~~~~~~fh-------psg-~va~Gt~~G--~w~V~d~e~~~lv-~~~--~d-~~~--ls~v~ysp-----~G~~lAv  464 (626)
T KOG2106|consen  406 IEDPAECADFH-------PSG-VVAVGTATG--RWFVLDTETQDLV-TIH--TD-NEQ--LSVVRYSP-----DGAFLAV  464 (626)
T ss_pred             ecCceeEeecc-------Ccc-eEEEeeccc--eEEEEecccceeE-EEE--ec-CCc--eEEEEEcC-----CCCEEEE
Confidence            36789999999       888 888888888  8889998875433 221  22 333  777 8999     8999999


Q ss_pred             ecCCCcEEEEEcccCcccccce-eecccccCEEEEEEecCCCEEEEEeCCCcEEEeeC
Q psy3599         162 GSEDSCVYFLDIQSKEHKNAVN-KLQGHACPVLGVSFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       162 gs~dg~v~iwd~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      |+.|+.|++|.+...  +.... .-+.+..+|+.+.|++|++++.+-|.|-.|..|..
T Consensus       465 gs~d~~iyiy~Vs~~--g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  465 GSHDNHIYIYRVSAN--GRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP  520 (626)
T ss_pred             ecCCCeEEEEEECCC--CcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence            999999999999862  22222 22334478999999999999999999999999943

>KOG0650|consensus

Probab=98.93  E-value=4.3e-09  Score=86.83  Aligned_cols=139  Identities=16%  Similarity=0.257  Sum_probs=105.7

Q ss_pred             cccCCcEEEEEECCCCceeeee---------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCe
Q psy3599          56 LRSTGVIVSILCDDLGRLSKGK---------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAV  114 (223)
Q Consensus        56 ~~~~~~i~~~~~~~~~~~~~~~---------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~  114 (223)
                      +.|...|..+.|...|..+.+.                     -+.-. .+.|.++.|+       |...+|++++... 
T Consensus       518 I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ks-kG~vq~v~FH-------Ps~p~lfVaTq~~-  588 (733)
T KOG0650|consen  518 IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKS-KGLVQRVKFH-------PSKPYLFVATQRS-  588 (733)
T ss_pred             EecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhc-CCceeEEEec-------CCCceEEEEeccc-
Confidence            3577888888888888877543                     01112 5678899999       7777777776654 


Q ss_pred             EEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEE
Q psy3599         115 CILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVL  193 (223)
Q Consensus       115 ~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~  193 (223)
                        +++||+..+..+.+.+. + ...   +.. +.+|     .|+.|+.|+.|+.++.+|+...  .++.+.+.-|...++
T Consensus       589 --vRiYdL~kqelvKkL~t-g-~kw---iS~msihp-----~GDnli~gs~d~k~~WfDldls--skPyk~lr~H~~avr  654 (733)
T KOG0650|consen  589 --VRIYDLSKQELVKKLLT-G-SKW---ISSMSIHP-----NGDNLILGSYDKKMCWFDLDLS--SKPYKTLRLHEKAVR  654 (733)
T ss_pred             --eEEEehhHHHHHHHHhc-C-Cee---eeeeeecC-----CCCeEEEecCCCeeEEEEcccC--cchhHHhhhhhhhhh
Confidence              89999987654443321 1 122   444 6777     7999999999999999999862  467888899999999


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEee
Q psy3599         194 GVSFNYDESLLATSDYQGLIILWS  217 (223)
Q Consensus       194 ~v~~~~~~~~l~s~s~d~~i~iwd  217 (223)
                      +|+|++.-.+|++|+.||++.++-
T Consensus       655 ~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  655 SVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             hhhhccccceeeeecCCCcEEEEe
Confidence            999999999999999999998874

>KOG0321|consensus

Probab=98.93  E-value=3.9e-09  Score=87.56  Aligned_cols=107  Identities=21%  Similarity=0.293  Sum_probs=86.0

Q ss_pred             CCCeEEEEEeCCCeEEEEEecCCCceEE-----eeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEccc
Q psy3599         101 RDPTLLVNIAANAVCILKVLDKEGAVQL-----KRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQS  175 (223)
Q Consensus       101 ~~~~~l~~~~~~~~~~v~i~d~~~~~~~-----~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~  175 (223)
                      .....|+.+.+++  .+.++|......-     ...+ ..|.+.+  +...|.|     ....|++++-|.++++||+..
T Consensus        62 n~eHiLavadE~G--~i~l~dt~~~~fr~ee~~lk~~-~aH~nAi--fDl~wap-----ge~~lVsasGDsT~r~Wdvk~  131 (720)
T KOG0321|consen   62 NKEHILAVADEDG--GIILFDTKSIVFRLEERQLKKP-LAHKNAI--FDLKWAP-----GESLLVSASGDSTIRPWDVKT  131 (720)
T ss_pred             CccceEEEecCCC--ceeeecchhhhcchhhhhhccc-cccccee--EeeccCC-----CceeEEEccCCceeeeeeecc
Confidence            4456777888888  7888887643222     1122 5888886  5557888     688999999999999999999


Q ss_pred             Cccccccee--ecccccCEEEEEEecC-CCEEEEEeCCCcEEEeeCCC
Q psy3599         176 KEHKNAVNK--LQGHACPVLGVSFNYD-ESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       176 ~~~~~~~~~--~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~  220 (223)
                         ..+...  +.+|...|.+++|.|. ...|++|+-||.|.|||++-
T Consensus       132 ---s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~  176 (720)
T KOG0321|consen  132 ---SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRC  176 (720)
T ss_pred             ---ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEec
Confidence               777776  8999999999999996 66899999999999999874

>KOG4227|consensus

Probab=98.93  E-value=1.4e-08  Score=80.14  Aligned_cols=122  Identities=14%  Similarity=0.147  Sum_probs=95.8

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCce------EEeeeeeccccCcceeEEE-eeecC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAV------QLKRKFNVNHKSSKYQVRS-TFCPI  150 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~------~~~~~~~~~h~~~~~~i~~-~~s~~  150 (223)
                      -+..| .+-|.+|.|+       .++++|++|+++.  .+++|....-.      .+. .....|...   |.| .|.. 
T Consensus        51 D~~~H-~GCiNAlqFS-------~N~~~L~SGGDD~--~~~~W~~de~~~~k~~KPI~-~~~~~H~SN---IF~L~F~~-  115 (609)
T KOG4227|consen   51 DVREH-TGCINALQFS-------HNDRFLASGGDDM--HGRVWNVDELMVRKTPKPIG-VMEHPHRSN---IFSLEFDL-  115 (609)
T ss_pred             hhhhh-ccccceeeec-------cCCeEEeecCCcc--eeeeechHHHHhhcCCCCce-eccCccccc---eEEEEEcc-
Confidence            34456 7889999999       8899999999999  89999876321      111 111234455   444 7877 


Q ss_pred             cccCCCcEEEEecCCCcEEEEEcccCcccccceeecc--cccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         151 MSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQG--HACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       151 ~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                          ....+++|..++.|..-|+.+   .+.+..+..  ..+.|..+.-+|-.++|++.+.+|.|.+||.+..
T Consensus       116 ----~N~~~~SG~~~~~VI~HDiEt---~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~  181 (609)
T KOG4227|consen  116 ----ENRFLYSGERWGTVIKHDIET---KQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR  181 (609)
T ss_pred             ----CCeeEecCCCcceeEeeeccc---ceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCC
Confidence                688999999999999999999   777777652  2348999999999999999999999999998864

>KOG0771|consensus

Probab=98.90  E-value=3.5e-08  Score=78.17  Aligned_cols=118  Identities=19%  Similarity=0.247  Sum_probs=87.4

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeee-------------------------e-cccc
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKF-------------------------N-VNHK  137 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~-------------------------~-~~h~  137 (223)
                      ...|.++.|+       +||.+|++-+.+.   .++|+..++..+...-                         . +...
T Consensus       186 ~~eV~DL~FS-------~dgk~lasig~d~---~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~  255 (398)
T KOG0771|consen  186 HAEVKDLDFS-------PDGKFLASIGADS---ARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPG  255 (398)
T ss_pred             cCccccceeC-------CCCcEEEEecCCc---eEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCC
Confidence            7899999999       9999999888776   5778877662221100                         0 0000


Q ss_pred             Ccc-----------------------eeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceee-cccccCE
Q psy3599         138 SSK-----------------------YQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKL-QGHACPV  192 (223)
Q Consensus       138 ~~~-----------------------~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~h~~~v  192 (223)
                      +.+                       ..+.+ +.++     +|++++.|+.||.|.|++..+   .+.++.. ++|...|
T Consensus       256 ~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-----dGkf~AlGT~dGsVai~~~~~---lq~~~~vk~aH~~~V  327 (398)
T KOG0771|consen  256 GGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-----DGKFLALGTMDGSVAIYDAKS---LQRLQYVKEAHLGFV  327 (398)
T ss_pred             CceeEEEeeeeccccccchhhhhhccCcceeEEEcC-----CCcEEEEeccCCcEEEEEece---eeeeEeehhhheeee
Confidence            000                       01334 4555     799999999999999999998   7776655 5699999


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         193 LGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       193 ~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      +.+.|+|+.+.+++.+.|....+..+.
T Consensus       328 T~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  328 TGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             eeEEEcCCcCcccccccCCceeEEEEe
Confidence            999999999999999989888877654

>KOG1524|consensus

Probab=98.90  E-value=1.2e-08  Score=83.46  Aligned_cols=134  Identities=13%  Similarity=0.280  Sum_probs=96.7

Q ss_pred             CcEEEEEECCCCceeeee-------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeee
Q psy3599          60 GVIVSILCDDLGRLSKGK-------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKF  132 (223)
Q Consensus        60 ~~i~~~~~~~~~~~~~~~-------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~  132 (223)
                      +.++.+. +.+|++....       ....| ...+.+-.|+       +||.-|++++.|+  .+++|.-. | .++..+
T Consensus        75 ~d~~~i~-s~DGkf~il~k~~rVE~sv~AH-~~A~~~gRW~-------~dGtgLlt~GEDG--~iKiWSrs-G-MLRStl  141 (737)
T KOG1524|consen   75 SDTLLIC-SNDGRFVILNKSARVERSISAH-AAAISSGRWS-------PDGAGLLTAGEDG--VIKIWSRS-G-MLRSTV  141 (737)
T ss_pred             cceEEEE-cCCceEEEecccchhhhhhhhh-hhhhhhcccC-------CCCceeeeecCCc--eEEEEecc-c-hHHHHH
Confidence            3344333 3367664322       44556 8899999999       9999999999999  99999854 4 344432


Q ss_pred             eccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCC
Q psy3599         133 NVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG  211 (223)
Q Consensus       133 ~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~  211 (223)
                        ......  +.| +|.|.    ..+.+++.+  +.+.|=-+..   ...+-.+++|.+-|.++.|++..+++++|+.|-
T Consensus       142 --~Q~~~~--v~c~~W~p~----S~~vl~c~g--~h~~IKpL~~---n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~  208 (737)
T KOG1524|consen  142 --VQNEES--IRCARWAPN----SNSIVFCQG--GHISIKPLAA---NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDF  208 (737)
T ss_pred             --hhcCce--eEEEEECCC----CCceEEecC--CeEEEeeccc---ccceeEEeccCcEEEEeecCccccceeecCCce
Confidence              333444  888 89995    345555443  3455544554   445677899999999999999999999999999


Q ss_pred             cEEEeeCC
Q psy3599         212 LIILWSRE  219 (223)
Q Consensus       212 ~i~iwd~~  219 (223)
                      ..++||-.
T Consensus       209 kfKvWD~~  216 (737)
T KOG1524|consen  209 RFKIWDAQ  216 (737)
T ss_pred             eEEeeccc
Confidence            99999953

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.89  E-value=2.3e-07  Score=75.23  Aligned_cols=120  Identities=28%  Similarity=0.457  Sum_probs=93.6

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeC-CCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAA-NAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFRE  155 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~  155 (223)
                      .+..| ...|..++|+       +++..++.++. ++  .+++|+...+..+.. + .+|...   +.+ .|+|     +
T Consensus       150 ~~~~~-~~~v~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~-~~~~~~---v~~~~~~~-----~  209 (466)
T COG2319         150 TLEGH-SESVTSLAFS-------PDGKLLASGSSLDG--TIKLWDLRTGKPLST-L-AGHTDP---VSSLAFSP-----D  209 (466)
T ss_pred             EEecC-cccEEEEEEC-------CCCCEEEecCCCCC--ceEEEEcCCCceEEe-e-ccCCCc---eEEEEEcC-----C
Confidence            34555 7889999999       88888888774 77  899999987554443 3 367777   555 7888     5


Q ss_pred             Cc-EEEEecCCCcEEEEEcccCcccccce-eecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         156 GA-CVVTGSEDSCVYFLDIQSKEHKNAVN-KLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       156 ~~-~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      +. .+++++.|+.+++||...   +..+. .+..|...+ ...|+|++..+++++.|+.+++||.+..
T Consensus       210 ~~~~~~~~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~  273 (466)
T COG2319         210 GGLLIASGSSDGTIRLWDLST---GKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSS  273 (466)
T ss_pred             cceEEEEecCCCcEEEEECCC---CcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCC
Confidence            66 566669999999998887   77777 688888775 4489999988999999999999998764

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.88  E-value=5.1e-08  Score=76.69  Aligned_cols=103  Identities=13%  Similarity=0.192  Sum_probs=75.7

Q ss_pred             eEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEE-EEecCCCcEEEEEcccCcccccc
Q psy3599         104 TLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACV-VTGSEDSCVYFLDIQSKEHKNAV  182 (223)
Q Consensus       104 ~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l-~sgs~dg~v~iwd~~~~~~~~~~  182 (223)
                      .++++++.++  .+.+||..++..+.. +. .+...   ....|+|     ++..+ ++++.++.|++||..+   ++.+
T Consensus         2 ~~~~s~~~d~--~v~~~d~~t~~~~~~-~~-~~~~~---~~l~~~~-----dg~~l~~~~~~~~~v~~~d~~~---~~~~   66 (300)
T TIGR03866         2 KAYVSNEKDN--TISVIDTATLEVTRT-FP-VGQRP---RGITLSK-----DGKLLYVCASDSDTIQVIDLAT---GEVI   66 (300)
T ss_pred             cEEEEecCCC--EEEEEECCCCceEEE-EE-CCCCC---CceEECC-----CCCEEEEEECCCCeEEEEECCC---CcEE
Confidence            5678888888  899999988866553 32 33322   3347888     67655 6778899999999998   7776


Q ss_pred             eeecccccCEEEEEEecCCCEEEE-EeCCCcEEEeeCCCCC
Q psy3599         183 NKLQGHACPVLGVSFNYDESLLAT-SDYQGLIILWSREKHE  222 (223)
Q Consensus       183 ~~~~~h~~~v~~v~~~~~~~~l~s-~s~d~~i~iwd~~~~~  222 (223)
                      ..+..+.. +..+.|+|+++.+++ ++.|+.+++||+++.+
T Consensus        67 ~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~  106 (300)
T TIGR03866        67 GTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRK  106 (300)
T ss_pred             EeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence            66665444 567899999987655 4568999999998643

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1517|consensus

Probab=98.88  E-value=2.1e-08  Score=87.83  Aligned_cols=111  Identities=14%  Similarity=0.139  Sum_probs=78.8

Q ss_pred             CCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccc
Q psy3599         101 RDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKN  180 (223)
Q Consensus       101 ~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~  180 (223)
                      ....+|+++++  .+.|+|||......+... +.+....   +++ .++.  ...++.+++|..||+|++||.+..+...
T Consensus      1175 Q~~G~Ll~tGd--~r~IRIWDa~~E~~~~di-P~~s~t~---vTa-LS~~--~~~gn~i~AGfaDGsvRvyD~R~a~~ds 1245 (1387)
T KOG1517|consen 1175 QQSGHLLVTGD--VRSIRIWDAHKEQVVADI-PYGSSTL---VTA-LSAD--LVHGNIIAAGFADGSVRVYDRRMAPPDS 1245 (1387)
T ss_pred             hhCCeEEecCC--eeEEEEEecccceeEeec-ccCCCcc---cee-eccc--ccCCceEEEeecCCceEEeecccCCccc
Confidence            33344444444  448999999877665543 2232222   332 2221  1158999999999999999999833234


Q ss_pred             cceeecccccC--EEEEEEecCCCE-EEEEeCCCcEEEeeCCC
Q psy3599         181 AVNKLQGHACP--VLGVSFNYDESL-LATSDYQGLIILWSREK  220 (223)
Q Consensus       181 ~~~~~~~h~~~--v~~v~~~~~~~~-l~s~s~d~~i~iwd~~~  220 (223)
                      .+...+.|...  |..+.+.+.|-- |++|+.||.|++||+|.
T Consensus      1246 ~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1246 LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred             cceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence            57778889887  999999987654 99999999999999987

>KOG2321|consensus

Probab=98.87  E-value=9.9e-08  Score=78.69  Aligned_cols=107  Identities=19%  Similarity=0.289  Sum_probs=78.3

Q ss_pred             CCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCccc
Q psy3599         101 RDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHK  179 (223)
Q Consensus       101 ~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~  179 (223)
                      +.-.+++.|+...  .+++ +++.|..+..+ . .....   +.+ ..++     -..+|++|+.+|.|..||.+.   .
T Consensus       144 ~scDly~~gsg~e--vYRl-NLEqGrfL~P~-~-~~~~~---lN~v~in~-----~hgLla~Gt~~g~VEfwDpR~---k  207 (703)
T KOG2321|consen  144 PSCDLYLVGSGSE--VYRL-NLEQGRFLNPF-E-TDSGE---LNVVSINE-----EHGLLACGTEDGVVEFWDPRD---K  207 (703)
T ss_pred             CCccEEEeecCcc--eEEE-Ecccccccccc-c-ccccc---ceeeeecC-----ccceEEecccCceEEEecchh---h
Confidence            4456666666666  5555 78878766542 1 22233   444 5677     478999999999999999998   5


Q ss_pred             ccceeec------cccc-----CEEEEEEecCCCEEEEEeCCCcEEEeeCCCCCC
Q psy3599         180 NAVNKLQ------GHAC-----PVLGVSFNYDESLLATSDYQGLIILWSREKHEP  223 (223)
Q Consensus       180 ~~~~~~~------~h~~-----~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~  223 (223)
                      ..+..+.      .|.+     .|+++.|+.+|-.+++|..+|.+.|||+++.+|
T Consensus       208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p  262 (703)
T KOG2321|consen  208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP  262 (703)
T ss_pred             hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc
Confidence            5555443      2333     499999999999999999999999999998776

>KOG2111|consensus

Probab=98.86  E-value=4.7e-07  Score=69.78  Aligned_cols=81  Identities=14%  Similarity=0.335  Sum_probs=67.9

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      .+..| ...|.|++.+       .+|.++|++|..+- +|||||..+|..+.... .|-....  +.| +|+|     +.
T Consensus       176 ~I~AH-~s~Iacv~Ln-------~~Gt~vATaStkGT-LIRIFdt~~g~~l~E~R-RG~d~A~--iy~iaFSp-----~~  238 (346)
T KOG2111|consen  176 IINAH-DSDIACVALN-------LQGTLVATASTKGT-LIRIFDTEDGTLLQELR-RGVDRAD--IYCIAFSP-----NS  238 (346)
T ss_pred             EEEcc-cCceeEEEEc-------CCccEEEEeccCcE-EEEEEEcCCCcEeeeee-cCCchhe--EEEEEeCC-----Cc
Confidence            45667 9999999999       99999999997663 79999999997776543 3655555  777 8999     89


Q ss_pred             cEEEEecCCCcEEEEEccc
Q psy3599         157 ACVVTGSEDSCVYFLDIQS  175 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~  175 (223)
                      .+|+..|+.|++.||.++.
T Consensus       239 s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  239 SWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             cEEEEEcCCCeEEEEEeec
Confidence            9999999999999999875

>KOG2139|consensus

Probab=98.86  E-value=1.7e-07  Score=73.46  Aligned_cols=112  Identities=16%  Similarity=0.246  Sum_probs=80.6

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEe-CCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIA-ANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVT  161 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~s  161 (223)
                      ..+|+++.|.       +||..+++++ .+.  .+.|||++++..+.-. ..+ -+.   +.. .|+|     +++++++
T Consensus       195 h~pVtsmqwn-------~dgt~l~tAS~gss--si~iWdpdtg~~~pL~-~~g-lgg---~slLkwSP-----dgd~lfa  255 (445)
T KOG2139|consen  195 HNPVTSMQWN-------EDGTILVTASFGSS--SIMIWDPDTGQKIPLI-PKG-LGG---FSLLKWSP-----DGDVLFA  255 (445)
T ss_pred             CceeeEEEEc-------CCCCEEeecccCcc--eEEEEcCCCCCccccc-ccC-CCc---eeeEEEcC-----CCCEEEE
Confidence            4699999999       9999999988 555  7999999988766532 111 122   444 7999     8999999


Q ss_pred             ecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeC
Q psy3599         162 GSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       162 gs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      +.-|+..++|+....  .....-..+ .+.|...+|+|+|.+|+.++ .|.-++|.+
T Consensus       256 At~davfrlw~e~q~--wt~erw~lg-sgrvqtacWspcGsfLLf~~-sgsp~lysl  308 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQS--WTKERWILG-SGRVQTACWSPCGSFLLFAC-SGSPRLYSL  308 (445)
T ss_pred             ecccceeeeehhccc--ceecceecc-CCceeeeeecCCCCEEEEEE-cCCceEEEE
Confidence            999999999965441  333333333 44899999999999876665 334455544

>KOG1538|consensus

Probab=98.85  E-value=1.3e-07  Score=79.44  Aligned_cols=119  Identities=17%  Similarity=0.253  Sum_probs=81.6

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecC------------
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPI------------  150 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~------------  150 (223)
                      ...|.+.+|.       .||.+|+.|-.++  ++.+.+......+....+ |-.+.+  +.+ +|+|.            
T Consensus       132 s~R~~~CsWt-------nDGqylalG~~nG--TIsiRNk~gEek~~I~Rp-gg~Nsp--iwsi~~~p~sg~G~~di~aV~  199 (1081)
T KOG1538|consen  132 SSRIICCSWT-------NDGQYLALGMFNG--TISIRNKNGEEKVKIERP-GGSNSP--IWSICWNPSSGEGRNDILAVA  199 (1081)
T ss_pred             heeEEEeeec-------CCCcEEEEeccCc--eEEeecCCCCcceEEeCC-CCCCCC--ceEEEecCCCCCCccceEEEE
Confidence            3456778888       9999999999888  787776443322221111 222221  222 33321            


Q ss_pred             -----------------------------cccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCC
Q psy3599         151 -----------------------------MSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDE  201 (223)
Q Consensus       151 -----------------------------~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~  201 (223)
                                                   ..+.+|.+++.|+.|+.+.+|-.+    +-.+.++-.....|+++...|++
T Consensus       200 DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~----GvrLGTvg~~D~WIWtV~~~PNs  275 (1081)
T KOG1538|consen  200 DWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD----GVRLGTVGEQDSWIWTVQAKPNS  275 (1081)
T ss_pred             eccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec----CeEEeeccccceeEEEEEEccCC
Confidence                                         122378889999999988887644    34556665567799999999999


Q ss_pred             CEEEEEeCCCcEEEeeC
Q psy3599         202 SLLATSDYQGLIILWSR  218 (223)
Q Consensus       202 ~~l~s~s~d~~i~iwd~  218 (223)
                      +.++.|+.||+|-.|++
T Consensus       276 Q~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  276 QYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             ceEEEEEccCeeehhhh
Confidence            99999999999998876

>KOG0650|consensus

Probab=98.84  E-value=1.4e-07  Score=78.21  Aligned_cols=119  Identities=14%  Similarity=0.197  Sum_probs=89.9

Q ss_pred             cCCCCeeEEEEeecccccCCCCeEEEEEe-CCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEE
Q psy3599          82 SQDCPITCLSWRSWISREARDPTLLVNIA-ANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVV  160 (223)
Q Consensus        82 ~~~~~i~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~  160 (223)
                      .+..+|..+.|+       ..|.+|++.. +++.+.+.|++++...... -|. ...+.+  ....|+|.     ..+++
T Consensus       519 ~~~k~i~~vtWH-------rkGDYlatV~~~~~~~~VliHQLSK~~sQ~-PF~-kskG~v--q~v~FHPs-----~p~lf  582 (733)
T KOG0650|consen  519 KHPKSIRQVTWH-------RKGDYLATVMPDSGNKSVLIHQLSKRKSQS-PFR-KSKGLV--QRVKFHPS-----KPYLF  582 (733)
T ss_pred             ecCCccceeeee-------cCCceEEEeccCCCcceEEEEecccccccC-chh-hcCCce--eEEEecCC-----CceEE
Confidence            336788889999       8999999766 4555578888887654442 332 333332  44489994     55555


Q ss_pred             EecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         161 TGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       161 sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      .++. ..|++||+..   .++++++......|..++.+|.|..|+.++.|+.++.+|+.-
T Consensus       583 VaTq-~~vRiYdL~k---qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldl  638 (733)
T KOG0650|consen  583 VATQ-RSVRIYDLSK---QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDL  638 (733)
T ss_pred             EEec-cceEEEehhH---HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEccc
Confidence            5544 5799999999   888888887777899999999999999999999999999864

>KOG0644|consensus

Probab=98.82  E-value=3.9e-09  Score=90.13  Aligned_cols=97  Identities=16%  Similarity=0.237  Sum_probs=76.5

Q ss_pred             cccccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeE
Q psy3599          54 DQLRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVC  115 (223)
Q Consensus        54 ~~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~  115 (223)
                      ..++|.+.|++..+|.+|+.+.+.                  .+.+| ...|+.++.+       ....+++++|.|.  
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGh-s~ditdlavs-------~~n~~iaaaS~D~--  254 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGH-SGDITDLAVS-------SNNTMIAAASNDK--  254 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCC-ccccchhccc-------hhhhhhhhcccCc--
Confidence            345899999999999988876543                  45567 7889999988       7888899999999  


Q ss_pred             EEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcc
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQ  174 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~  174 (223)
                      .|++|-+..+..+. .+ .||++.   +++ +|+|.         .+.+.||++++||.+
T Consensus       255 vIrvWrl~~~~pvs-vL-rghtga---vtaiafsP~---------~sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  255 VIRVWRLPDGAPVS-VL-RGHTGA---VTAIAFSPR---------ASSSDDGTCRIWDAR  300 (1113)
T ss_pred             eEEEEecCCCchHH-HH-hccccc---eeeeccCcc---------ccCCCCCceEecccc
Confidence            89999998886555 33 599998   666 89983         266778888888866

>KOG1538|consensus

Probab=98.79  E-value=1.5e-08  Score=84.95  Aligned_cols=113  Identities=23%  Similarity=0.374  Sum_probs=81.4

Q ss_pred             CCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEec
Q psy3599          85 CPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGS  163 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs  163 (223)
                      ..|..++|-       |||..|+.+.++.   +.+||.+.|..+.. + .+|.+.   +.| +|+.     +|+.+++|+
T Consensus        13 hci~d~afk-------PDGsqL~lAAg~r---lliyD~ndG~llqt-L-KgHKDt---VycVAys~-----dGkrFASG~   72 (1081)
T KOG1538|consen   13 HCINDIAFK-------PDGTQLILAAGSR---LLVYDTSDGTLLQP-L-KGHKDT---VYCVAYAK-----DGKRFASGS   72 (1081)
T ss_pred             cchheeEEC-------CCCceEEEecCCE---EEEEeCCCcccccc-c-ccccce---EEEEEEcc-----CCceeccCC
Confidence            378999999       9999888877776   67899998877664 4 599998   555 7999     899999999


Q ss_pred             CCCcEEEEEcccCc-----ccccce--ee-------------------------ccc--ccCEEEEEEecCCCEEEEEeC
Q psy3599         164 EDSCVYFLDIQSKE-----HKNAVN--KL-------------------------QGH--ACPVLGVSFNYDESLLATSDY  209 (223)
Q Consensus       164 ~dg~v~iwd~~~~~-----~~~~~~--~~-------------------------~~h--~~~v~~v~~~~~~~~l~s~s~  209 (223)
                      .|..|.+|..+-.+     ++..+.  .+                         .-|  ...|.+.+|+.||.+++.|-.
T Consensus        73 aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~  152 (1081)
T KOG1538|consen   73 ADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMF  152 (1081)
T ss_pred             CceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEecc
Confidence            99999999865411     000000  00                         011  224667777777888888888


Q ss_pred             CCcEEEee
Q psy3599         210 QGLIILWS  217 (223)
Q Consensus       210 d~~i~iwd  217 (223)
                      +|+|.|=+
T Consensus       153 nGTIsiRN  160 (1081)
T KOG1538|consen  153 NGTISIRN  160 (1081)
T ss_pred             CceEEeec
Confidence            88877653

>KOG3914|consensus

Probab=98.78  E-value=1.5e-07  Score=74.35  Aligned_cols=93  Identities=15%  Similarity=0.219  Sum_probs=73.2

Q ss_pred             EEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceee-cccccCEEE
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKL-QGHACPVLG  194 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~h~~~v~~  194 (223)
                      .+.+|....+.....   .||-.-.  ...+++|     |+.+|+++..|..|++-....   ...+.++ .||+..|..
T Consensus       133 ~~di~s~~~~~~~~~---lGhvSml--~dVavS~-----D~~~IitaDRDEkIRvs~ypa---~f~IesfclGH~eFVS~  199 (390)
T KOG3914|consen  133 SFDILSADSGRCEPI---LGHVSML--LDVAVSP-----DDQFIITADRDEKIRVSRYPA---TFVIESFCLGHKEFVST  199 (390)
T ss_pred             eeeeecccccCcchh---hhhhhhh--heeeecC-----CCCEEEEecCCceEEEEecCc---ccchhhhccccHhheee
Confidence            778887665444332   6998874  3348999     899999999999999977776   4445544 579999999


Q ss_pred             EEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         195 VSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       195 v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ++.-++. .|+++|.|+++++||+++++
T Consensus       200 isl~~~~-~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  200 ISLTDNY-LLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             eeeccCc-eeeecCCCCcEEEEecccCC
Confidence            9987654 48999999999999999886

>KOG4547|consensus

Probab=98.77  E-value=3.5e-07  Score=75.47  Aligned_cols=139  Identities=17%  Similarity=0.239  Sum_probs=99.4

Q ss_pred             ccCCcEEEEEECCCCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccc
Q psy3599          57 RSTGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNH  136 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h  136 (223)
                      ...|.|...+.. .|.+-.. .....+.+.|.++.++       .+-..|.+++.+.  .+..|+...+..+. .+. +.
T Consensus        77 t~~g~v~~ys~~-~g~it~~-~st~~h~~~v~~~~~~-------~~~~ciyS~~ad~--~v~~~~~~~~~~~~-~~~-~~  143 (541)
T KOG4547|consen   77 TPQGSVLLYSVA-GGEITAK-LSTDKHYGNVNEILDA-------QRLGCIYSVGADL--KVVYILEKEKVIIR-IWK-EQ  143 (541)
T ss_pred             cCCccEEEEEec-CCeEEEE-EecCCCCCcceeeecc-------cccCceEecCCce--eEEEEecccceeee-eec-cC
Confidence            345666644443 2343332 2224448899999998       8888899999888  89999998876554 332 44


Q ss_pred             cCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecC-----CCEE-EEEeCC
Q psy3599         137 KSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD-----ESLL-ATSDYQ  210 (223)
Q Consensus       137 ~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~-----~~~l-~s~s~d  210 (223)
                      ....  ...+.+|     |+..+++++  +.|++||+++   ++.+.+|.+|.++|++++|--+     |.++ .+...+
T Consensus       144 ~~~~--~sl~is~-----D~~~l~~as--~~ik~~~~~~---kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~  211 (541)
T KOG4547|consen  144 KPLV--SSLCISP-----DGKILLTAS--RQIKVLDIET---KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAE  211 (541)
T ss_pred             CCcc--ceEEEcC-----CCCEEEecc--ceEEEEEccC---ceEEEEecCCCcceEEEEEEEeccccccceeeeccccc
Confidence            4442  3337888     788998876  5799999999   9999999999999999999876     4444 444556


Q ss_pred             CcEEEeeCCC
Q psy3599         211 GLIILWSREK  220 (223)
Q Consensus       211 ~~i~iwd~~~  220 (223)
                      .-+.+|-+..
T Consensus       212 r~i~~w~v~~  221 (541)
T KOG4547|consen  212 RGITVWVVEK  221 (541)
T ss_pred             cceeEEEEEc
Confidence            6677886543

>KOG2315|consensus

Probab=98.75  E-value=3.4e-07  Score=75.24  Aligned_cols=115  Identities=13%  Similarity=0.274  Sum_probs=85.6

Q ss_pred             eeecCCCCeeEEEEeecccccCCCCeEEEEEe--CCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCC
Q psy3599          79 LVLSQDCPITCLSWRSWISREARDPTLLVNIA--ANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREG  156 (223)
Q Consensus        79 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~--~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~  156 (223)
                      +.....+||.++.|+       +++..++++-  .-.  .+.++|++.. .+. .|..|.++.   +  -|+|     .|
T Consensus       265 V~L~k~GPVhdv~W~-------~s~~EF~VvyGfMPA--kvtifnlr~~-~v~-df~egpRN~---~--~fnp-----~g  323 (566)
T KOG2315|consen  265 VPLLKEGPVHDVTWS-------PSGREFAVVYGFMPA--KVTIFNLRGK-PVF-DFPEGPRNT---A--FFNP-----HG  323 (566)
T ss_pred             EecCCCCCceEEEEC-------CCCCEEEEEEecccc--eEEEEcCCCC-EeE-eCCCCCccc---e--EECC-----CC
Confidence            344447899999999       8887666544  455  7899998754 333 232244333   2  4999     68


Q ss_pred             cEEEEecCC---CcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEe------CCCcEEEeeCC
Q psy3599         157 ACVVTGSED---SCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSD------YQGLIILWSRE  219 (223)
Q Consensus       157 ~~l~sgs~d---g~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s------~d~~i~iwd~~  219 (223)
                      ++|+.++-+   |.+-+||+.+   .+++.++++-..  +-..|+|||.+|+|+.      .|+.++||+..
T Consensus       324 ~ii~lAGFGNL~G~mEvwDv~n---~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  324 NIILLAGFGNLPGDMEVWDVPN---RKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             CEEEEeecCCCCCceEEEeccc---hhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            888776654   7999999999   899999987554  4579999999999887      57889999874

>KOG1587|consensus

Probab=98.75  E-value=6.6e-08  Score=81.74  Aligned_cols=122  Identities=13%  Similarity=0.166  Sum_probs=90.5

Q ss_pred             eeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCc
Q psy3599          79 LVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGA  157 (223)
Q Consensus        79 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~  157 (223)
                      ...| .++|+++.++      |....++.+++ |-  .++||...........+ ..+...   +.. +|||.    ...
T Consensus       394 ~~~h-~g~v~~v~~n------PF~~k~fls~g-DW--~vriWs~~~~~~Pl~~~-~~~~~~---v~~vaWSpt----rpa  455 (555)
T KOG1587|consen  394 FITH-IGPVYAVSRN------PFYPKNFLSVG-DW--TVRIWSEDVIASPLLSL-DSSPDY---VTDVAWSPT----RPA  455 (555)
T ss_pred             cccc-CcceEeeecC------CCccceeeeec-cc--eeEeccccCCCCcchhh-hhccce---eeeeEEcCc----Cce
Confidence            3445 8899999999      24455566666 55  68999876222222222 233333   555 89997    789


Q ss_pred             EEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         158 CVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       158 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      +++++..||.+.+||+.... ..++.+.+.+....+.+.|++.|..|++|+..|.+.+|++.
T Consensus       456 vF~~~d~~G~l~iWDLl~~~-~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  456 VFATVDGDGNLDIWDLLQDD-EEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             EEEEEcCCCceehhhhhccc-cCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            99999999999999998722 45677776666677888999999999999999999999985

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.72  E-value=5.2e-07  Score=67.02  Aligned_cols=100  Identities=17%  Similarity=0.257  Sum_probs=70.0

Q ss_pred             ccCCcEEEEEECCCCceeeee-----------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCe-EEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK-----------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAV-CILK  118 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~-----------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~v~  118 (223)
                      ...+.|..++|+|+|+.+...                 ..... ...+..+.|+       |+|++|++++.+.. -.+.
T Consensus        57 ~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~-~~~~n~i~ws-------P~G~~l~~~g~~n~~G~l~  128 (194)
T PF08662_consen   57 KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG-TQPRNTISWS-------PDGRFLVLAGFGNLNGDLE  128 (194)
T ss_pred             cCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec-CCCceEEEEC-------CCCCEEEEEEccCCCcEEE
Confidence            345679999999977653211                 12233 5678899999       99999998874321 1589


Q ss_pred             EecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecC------CCcEEEEEccc
Q psy3599         119 VLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE------DSCVYFLDIQS  175 (223)
Q Consensus       119 i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~------dg~v~iwd~~~  175 (223)
                      +||.++...+..   ..|...   ..+.|+|     +|.++++++.      |..++||+...
T Consensus       129 ~wd~~~~~~i~~---~~~~~~---t~~~WsP-----dGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  129 FWDVRKKKKIST---FEHSDA---TDVEWSP-----DGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             EEECCCCEEeec---cccCcE---EEEEEcC-----CCCEEEEEEeccceeccccEEEEEecC
Confidence            999997766653   244332   5558999     7999998875      67788999864

>KOG1240|consensus

Probab=98.67  E-value=7.6e-07  Score=79.35  Aligned_cols=138  Identities=17%  Similarity=0.212  Sum_probs=91.2

Q ss_pred             ECCCCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCc----eEEeeeeeccccCccee
Q psy3599          67 CDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGA----VQLKRKFNVNHKSSKYQ  142 (223)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~----~~~~~~~~~~h~~~~~~  142 (223)
                      |++.|.+++  .+..| ...+..++-+      .+++.+|++||+|+  +|++|+...-    ..-+........+..  
T Consensus      1034 W~p~G~lVA--hL~Eh-s~~v~k~a~s------~~~~s~FvsgS~DG--tVKvW~~~k~~~~~~s~rS~ltys~~~sr-- 1100 (1431)
T KOG1240|consen 1034 WNPRGILVA--HLHEH-SSAVIKLAVS------SEHTSLFVSGSDDG--TVKVWNLRKLEGEGGSARSELTYSPEGSR-- 1100 (1431)
T ss_pred             CCccceEee--hhhhc-cccccceeec------CCCCceEEEecCCc--eEEEeeehhhhcCcceeeeeEEEeccCCc--
Confidence            566777766  56666 6677788887      26679999999999  9999997521    111111111112222  


Q ss_pred             EEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCccc----cccee---------------------------------
Q psy3599         143 VRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHK----NAVNK---------------------------------  184 (223)
Q Consensus       143 i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~----~~~~~---------------------------------  184 (223)
                      +.+ .+++     .++.++.|+.||.|.+.++......    .+...                                 
T Consensus      1101 ~~~vt~~~-----~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~i 1175 (1431)
T KOG1240|consen 1101 VEKVTMCG-----NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRI 1175 (1431)
T ss_pred             eEEEEecc-----CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccce
Confidence            333 4566     6888888899999998887541000    00000                                 


Q ss_pred             ---------------ecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         185 ---------------LQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       185 ---------------~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                                     .....+.|++++.+|.++.+++|+..|.+.+||+|=+.
T Consensus      1176 v~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~ 1228 (1431)
T KOG1240|consen 1176 VSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV 1228 (1431)
T ss_pred             EEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCc
Confidence                           01123569999999999999999999999999998544

>KOG1409|consensus

Probab=98.61  E-value=7.2e-07  Score=69.50  Aligned_cols=99  Identities=16%  Similarity=0.265  Sum_probs=71.1

Q ss_pred             ccCCcEEEEEECCCCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccc
Q psy3599          57 RSTGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNH  136 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h  136 (223)
                      .|.|.|..+++.+++--..+ .+..| ..++.+++|.       +...+|.+|..+.  .+-+||+..+....... .+|
T Consensus       172 d~~gqvt~lr~~~~~~~~i~-~~~~h-~~~~~~l~Wd-------~~~~~LfSg~~d~--~vi~wdigg~~g~~~el-~gh  239 (404)
T KOG1409|consen  172 DHSGQITMLKLEQNGCQLIT-TFNGH-TGEVTCLKWD-------PGQRLLFSGASDH--SVIMWDIGGRKGTAYEL-QGH  239 (404)
T ss_pred             ccccceEEEEEeecCCceEE-EEcCc-ccceEEEEEc-------CCCcEEEeccccC--ceEEEeccCCcceeeee-ccc
Confidence            35566666666664322222 45667 8999999999       8888889998888  78899987554444344 588


Q ss_pred             cCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEccc
Q psy3599         137 KSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQS  175 (223)
Q Consensus       137 ~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~  175 (223)
                      ...   ++. .+.+     .-..+++++.||.|-+||.+.
T Consensus       240 ~~k---V~~l~~~~-----~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  240 NDK---VQALSYAQ-----HTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             hhh---hhhhhhhh-----hheeeeeccCCCeEEEEeccc
Confidence            877   554 4444     477899999999999999764

>KOG2321|consensus

Probab=98.59  E-value=7.9e-07  Score=73.52  Aligned_cols=144  Identities=15%  Similarity=0.277  Sum_probs=96.8

Q ss_pred             cCCcEEEEEECCCCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeec---
Q psy3599          58 STGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNV---  134 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~---  134 (223)
                      ....|+-+... .|+++.  .+... ...++++..+       +...+|++|+.++  .+..||......+...-..   
T Consensus       153 sg~evYRlNLE-qGrfL~--P~~~~-~~~lN~v~in-------~~hgLla~Gt~~g--~VEfwDpR~ksrv~~l~~~~~v  219 (703)
T KOG2321|consen  153 SGSEVYRLNLE-QGRFLN--PFETD-SGELNVVSIN-------EEHGLLACGTEDG--VVEFWDPRDKSRVGTLDAASSV  219 (703)
T ss_pred             cCcceEEEEcc-cccccc--ccccc-cccceeeeec-------CccceEEecccCc--eEEEecchhhhhheeeeccccc
Confidence            34445533333 355554  23333 5789999999       8889999999899  8999998765444321110   


Q ss_pred             -cccCc--ceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccce-eecccccCEEEEEEecC--CCEEEEE
Q psy3599         135 -NHKSS--KYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVN-KLQGHACPVLGVSFNYD--ESLLATS  207 (223)
Q Consensus       135 -~h~~~--~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~h~~~v~~v~~~~~--~~~l~s~  207 (223)
                       .|.+.  ...+++ .|+.     +|-.++.|+.+|.++|||++.   .+++. +-.+...+|..+.|.+.  ++.++|.
T Consensus       220 ~s~pg~~~~~svTal~F~d-----~gL~~aVGts~G~v~iyDLRa---~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~  291 (703)
T KOG2321|consen  220 NSHPGGDAAPSVTALKFRD-----DGLHVAVGTSTGSVLIYDLRA---SKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM  291 (703)
T ss_pred             CCCccccccCcceEEEecC-----CceeEEeeccCCcEEEEEccc---CCceeecccCCccceeeecccccCCCceEEec
Confidence             11111  111444 6776     689999999999999999998   55543 33344568999999876  4566666


Q ss_pred             eCCCcEEEeeCCCCCC
Q psy3599         208 DYQGLIILWSREKHEP  223 (223)
Q Consensus       208 s~d~~i~iwd~~~~~~  223 (223)
                      . ...++|||-.+|+|
T Consensus       292 D-k~~~kiWd~~~Gk~  306 (703)
T KOG2321|consen  292 D-KRILKIWDECTGKP  306 (703)
T ss_pred             c-hHHhhhcccccCCc
Confidence            3 56789999988875

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.58  E-value=2.7e-06  Score=71.08  Aligned_cols=141  Identities=11%  Similarity=0.083  Sum_probs=81.8

Q ss_pred             cCCcEEEEEECCCCceeeee----------eeee---------cCCCCeeEEEEeecccccCCCCeEEEEEe-CCCeEEE
Q psy3599          58 STGVIVSILCDDLGRLSKGK----------RLVL---------SQDCPITCLSWRSWISREARDPTLLVNIA-ANAVCIL  117 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~----------~~~~---------~~~~~i~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~v  117 (223)
                      +.+.+....|+|+|+.+...          .+..         ........+.|+       |||..|+.++ .++...+
T Consensus       202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wS-------PDG~~La~~~~~~g~~~I  274 (429)
T PRK01742        202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFS-------PDGSRLAFASSKDGVLNI  274 (429)
T ss_pred             CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeEC-------CCCCEEEEEEecCCcEEE
Confidence            44567777888877654321          0110         012234468898       9999888654 4552123


Q ss_pred             EEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEE-ecCCCcEEEEEcccCcccccceeecccccCEEEE
Q psy3599         118 KVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVT-GSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGV  195 (223)
Q Consensus       118 ~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~s-gs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v  195 (223)
                      .++|..++... ..  ..+...   ... .|+|     ++..|+. +..+|...+|++...  +.....+ .+..  ...
T Consensus       275 y~~d~~~~~~~-~l--t~~~~~---~~~~~wSp-----DG~~i~f~s~~~g~~~I~~~~~~--~~~~~~l-~~~~--~~~  338 (429)
T PRK01742        275 YVMGANGGTPS-QL--TSGAGN---NTEPSWSP-----DGQSILFTSDRSGSPQVYRMSAS--GGGASLV-GGRG--YSA  338 (429)
T ss_pred             EEEECCCCCeE-ee--ccCCCC---cCCEEECC-----CCCEEEEEECCCCCceEEEEECC--CCCeEEe-cCCC--CCc
Confidence            34566655432 22  244333   333 7999     7876654 445788888887641  1112222 3333  457


Q ss_pred             EEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         196 SFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       196 ~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .|+|+|..|+.++.++ +.+||+.+++
T Consensus       339 ~~SpDG~~ia~~~~~~-i~~~Dl~~g~  364 (429)
T PRK01742        339 QISADGKTLVMINGDN-VVKQDLTSGS  364 (429)
T ss_pred             cCCCCCCEEEEEcCCC-EEEEECCCCC
Confidence            8999999988887655 5558987764

>KOG1334|consensus

Probab=98.55  E-value=1.9e-07  Score=75.57  Aligned_cols=117  Identities=21%  Similarity=0.352  Sum_probs=88.7

Q ss_pred             CCCeeEEEEeecccccCCCC-eEEEEEeCCCeEEEEEecCC--Cc----------eEEeeeeeccccCcceeEEE--eee
Q psy3599          84 DCPITCLSWRSWISREARDP-TLLVNIAANAVCILKVLDKE--GA----------VQLKRKFNVNHKSSKYQVRS--TFC  148 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~v~i~d~~--~~----------~~~~~~~~~~h~~~~~~i~~--~~s  148 (223)
                      .-.|+++.|+       .++ .+|++-.+..   +.++..+  .+          ..+...+ +||.+... |+.  .|-
T Consensus       336 ~v~ITgl~Ys-------h~~sElLaSYnDe~---IYLF~~~~~~G~~p~~~s~~~~~~k~vY-KGHrN~~T-VKgVNFfG  403 (559)
T KOG1334|consen  336 PVNITGLVYS-------HDGSELLASYNDED---IYLFNKSMGDGSEPDPSSPREQYVKRVY-KGHRNSRT-VKGVNFFG  403 (559)
T ss_pred             cccceeEEec-------CCccceeeeecccc---eEEeccccccCCCCCCCcchhhccchhh-cccccccc-cceeeecc
Confidence            4579999998       555 4555554444   4455433  22          1222223 59988754 666  577


Q ss_pred             cCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         149 PIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       149 ~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      |     ..+++++||.-|.|.||+-.+   ++.+..+++-..-|+|+.-+|.-..||+++-|..|+||-..+
T Consensus       404 P-----rsEyVvSGSDCGhIFiW~K~t---~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  404 P-----RSEYVVSGSDCGHIFIWDKKT---GEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             C-----ccceEEecCccceEEEEecch---hHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence            7     789999999999999999999   999999988667899999999999999999999999997643

>KOG1272|consensus

Probab=98.54  E-value=3.4e-07  Score=73.79  Aligned_cols=109  Identities=13%  Similarity=0.167  Sum_probs=83.0

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEe
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTG  162 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sg  162 (223)
                      .+.+..++-+       |-...+-+|..++  +|.+|.++..+.+...  ..|.+.   +.+ ++.+     +|.+++|.
T Consensus       251 ~G~~~vm~qN-------P~NaVih~GhsnG--tVSlWSP~skePLvKi--LcH~g~---V~siAv~~-----~G~YMaTt  311 (545)
T KOG1272|consen  251 AGRTDVMKQN-------PYNAVIHLGHSNG--TVSLWSPNSKEPLVKI--LCHRGP---VSSIAVDR-----GGRYMATT  311 (545)
T ss_pred             CCccchhhcC-------CccceEEEcCCCc--eEEecCCCCcchHHHH--HhcCCC---cceEEECC-----CCcEEeec
Confidence            4566667666       7778888888999  9999999988766655  689988   666 8988     79999999


Q ss_pred             cCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEee
Q psy3599         163 SEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWS  217 (223)
Q Consensus       163 s~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd  217 (223)
                      +.|..++|||+++   ...+.++.. ..+...+++|..|.  +.+|....|.||.
T Consensus       312 G~Dr~~kIWDlR~---~~ql~t~~t-p~~a~~ls~Sqkgl--LA~~~G~~v~iw~  360 (545)
T KOG1272|consen  312 GLDRKVKIWDLRN---FYQLHTYRT-PHPASNLSLSQKGL--LALSYGDHVQIWK  360 (545)
T ss_pred             ccccceeEeeecc---ccccceeec-CCCccccccccccc--eeeecCCeeeeeh
Confidence            9999999999998   554554443 34567788876654  3444556799993

>KOG0280|consensus

Probab=98.53  E-value=1.2e-06  Score=67.02  Aligned_cols=112  Identities=17%  Similarity=0.167  Sum_probs=80.7

Q ss_pred             CCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCC-CceEEeeeeeccccCcceeEEEeee
Q psy3599          70 LGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKE-GAVQLKRKFNVNHKSSKYQVRSTFC  148 (223)
Q Consensus        70 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~-~~~~~~~~~~~~h~~~~~~i~~~~s  148 (223)
                      ...+.....++.| +.++....|+.      .+.+++.+|++|+  .+..||.. ++..+..-. .-|...+  +...-+
T Consensus       152 ~~~le~vq~wk~H-e~E~Wta~f~~------~~pnlvytGgDD~--~l~~~D~R~p~~~i~~n~-kvH~~GV--~SI~ss  219 (339)
T KOG0280|consen  152 EMVLEKVQTWKVH-EFEAWTAKFSD------KEPNLVYTGGDDG--SLSCWDIRIPKTFIWHNS-KVHTSGV--VSIYSS  219 (339)
T ss_pred             eeeeeeccccccc-ceeeeeeeccc------CCCceEEecCCCc--eEEEEEecCCcceeeecc-eeeecce--EEEecC
Confidence            3444455577888 88899999983      5668899999999  89999987 444444322 3566663  332334


Q ss_pred             cCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecC
Q psy3599         149 PIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD  200 (223)
Q Consensus       149 ~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~  200 (223)
                      |.    .+.+|++|+.|..|++||.++-  ++++..-+. .+.|+.+.++|.
T Consensus       220 ~~----~~~~I~TGsYDe~i~~~DtRnm--~kPl~~~~v-~GGVWRi~~~p~  264 (339)
T KOG0280|consen  220 PP----KPTYIATGSYDECIRVLDTRNM--GKPLFKAKV-GGGVWRIKHHPE  264 (339)
T ss_pred             CC----CCceEEEeccccceeeeehhcc--cCccccCcc-ccceEEEEecch
Confidence            43    6889999999999999999952  566665542 477999999985

>KOG1587|consensus

Probab=98.51  E-value=3.9e-06  Score=71.22  Aligned_cols=117  Identities=16%  Similarity=0.165  Sum_probs=82.5

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEE---ecCCCce-EE---eeeeeccccCcceeEEE-eeecCcccCC
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKV---LDKEGAV-QL---KRKFNVNHKSSKYQVRS-TFCPIMSFRE  155 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i---~d~~~~~-~~---~~~~~~~h~~~~~~i~~-~~s~~~~~~~  155 (223)
                      ...+++++|.      +.+...++.|++.|  .+..   .+..... .+   ...+ ..|.+.   +.+ .++|.    .
T Consensus       347 ~~~~t~~~F~------~~~p~~FiVGTe~G--~v~~~~r~g~~~~~~~~~~~~~~~-~~h~g~---v~~v~~nPF----~  410 (555)
T KOG1587|consen  347 AVGATSLKFE------PTDPNHFIVGTEEG--KVYKGCRKGYTPAPEVSYKGHSTF-ITHIGP---VYAVSRNPF----Y  410 (555)
T ss_pred             ccceeeEeec------cCCCceEEEEcCCc--EEEEEeccCCcccccccccccccc-cccCcc---eEeeecCCC----c
Confidence            4578889998      36677788888877  3322   2232222 00   1111 245555   555 67886    3


Q ss_pred             CcEEEEecCCCcEEEEEcc-cCcccccceeecccccCEEEEEEecC-CCEEEEEeCCCcEEEeeCCC
Q psy3599         156 GACVVTGSEDSCVYFLDIQ-SKEHKNAVNKLQGHACPVLGVSFNYD-ESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       156 ~~~l~sgs~dg~v~iwd~~-~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~  220 (223)
                      ...+.+++ |..+++|... .   ..++..++.+...|.+++|||- ...|+++..||.+.+||+..
T Consensus       411 ~k~fls~g-DW~vriWs~~~~---~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~  473 (555)
T KOG1587|consen  411 PKNFLSVG-DWTVRIWSEDVI---ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ  473 (555)
T ss_pred             cceeeeec-cceeEeccccCC---CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence            55666666 8899999988 5   6778888888888999999996 56788999999999999875

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.50  E-value=4.7e-06  Score=69.62  Aligned_cols=114  Identities=18%  Similarity=0.248  Sum_probs=76.8

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeC-CCeEEEEEecCCCceEE-eeeeeccccCcceeEEEeeecCcccCCCcEEEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAA-NAVCILKVLDKEGAVQL-KRKFNVNHKSSKYQVRSTFCPIMSFREGACVVT  161 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~v~i~d~~~~~~~-~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~s  161 (223)
                      ...+.+..|+       |||+.|+..+. ++-..+.+||+.++... ...+ .++..     ...|+|     ++..|+.
T Consensus       203 ~~~v~~p~wS-------PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-~g~~~-----~~~wSP-----DG~~La~  264 (429)
T PRK01742        203 SQPLMSPAWS-------PDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-RGHNG-----APAFSP-----DGSRLAF  264 (429)
T ss_pred             CCccccceEc-------CCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-CCccC-----ceeECC-----CCCEEEE
Confidence            6689999999       99999987763 22226888998876432 1112 13322     226999     7887776


Q ss_pred             e-cCCCcEEEE--EcccCcccccceeecccccCEEEEEEecCCCEEEEEe-CCCcEEEeeCC
Q psy3599         162 G-SEDSCVYFL--DIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSD-YQGLIILWSRE  219 (223)
Q Consensus       162 g-s~dg~v~iw--d~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s-~d~~i~iwd~~  219 (223)
                      + +.+|.+.||  |+.+   ++ +..+..+...+..+.|+|+|..|+.++ .++...||++.
T Consensus       265 ~~~~~g~~~Iy~~d~~~---~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~  322 (429)
T PRK01742        265 ASSKDGVLNIYVMGANG---GT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMS  322 (429)
T ss_pred             EEecCCcEEEEEEECCC---CC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence            5 467866555  5555   43 445555666788999999999777655 56788888764

>KOG1334|consensus

Probab=98.50  E-value=5.7e-07  Score=72.95  Aligned_cols=130  Identities=15%  Similarity=0.158  Sum_probs=100.4

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCc
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGA  157 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~  157 (223)
                      .+..| .+-|..+.|.       ..|..|++++++.  .+-+||...+....... -||...+  ....|-|..   +..
T Consensus       137 kL~~H-~GcVntV~FN-------~~Gd~l~SgSDD~--~vv~WdW~~~~~~l~f~-SGH~~Nv--fQaKFiP~s---~d~  200 (559)
T KOG1334|consen  137 KLNKH-KGCVNTVHFN-------QRGDVLASGSDDL--QVVVWDWVSGSPKLSFE-SGHCNNV--FQAKFIPFS---GDR  200 (559)
T ss_pred             cccCC-CCccceeeec-------ccCceeeccCccc--eEEeehhhccCcccccc-cccccch--hhhhccCCC---CCc
Confidence            45556 8889999999       9999999999999  89999998887666444 5998886  333576643   677


Q ss_pred             EEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecC-CCEEEEEeCCCcEEEeeCCCCCC
Q psy3599         158 CVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD-ESLLATSDYQGLIILWSREKHEP  223 (223)
Q Consensus       158 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~~  223 (223)
                      .+++.+.||.|++=.+...+..+-...+..|.++|..++.-|+ ...|.|++.|+.+.-.|++...|
T Consensus       201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~p  267 (559)
T KOG1334|consen  201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVP  267 (559)
T ss_pred             CceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCc
Confidence            8999999999998776542111223344558999999999997 55688999999999999987654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.50  E-value=2.4e-05  Score=63.02  Aligned_cols=143  Identities=10%  Similarity=0.009  Sum_probs=88.0

Q ss_pred             ccCCcEEEEEECCCCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEe-CCCeEEEEEecCC-CceE-Eeeeee
Q psy3599          57 RSTGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIA-ANAVCILKVLDKE-GAVQ-LKRKFN  133 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~v~i~d~~-~~~~-~~~~~~  133 (223)
                      ..++.|..+.++.+|++.....+. . .+....+.++       |++++|++++ .+.  .+.+|+.. .+.. ....  
T Consensus         9 ~~~~~I~~~~~~~~g~l~~~~~~~-~-~~~~~~l~~s-------pd~~~lyv~~~~~~--~i~~~~~~~~g~l~~~~~--   75 (330)
T PRK11028          9 PESQQIHVWNLNHEGALTLLQVVD-V-PGQVQPMVIS-------PDKRHLYVGVRPEF--RVLSYRIADDGALTFAAE--   75 (330)
T ss_pred             CCCCCEEEEEECCCCceeeeeEEe-c-CCCCccEEEC-------CCCCEEEEEECCCC--cEEEEEECCCCceEEeee--
Confidence            356888888886566655443333 2 4567788999       8998876654 344  45666654 2321 1111  


Q ss_pred             ccccCcceeEEEeeecCcccCCCcEEEEecC-CCcEEEEEcccCcc-cccceeecccccCEEEEEEecCCCEEEEEe-CC
Q psy3599         134 VNHKSSKYQVRSTFCPIMSFREGACVVTGSE-DSCVYFLDIQSKEH-KNAVNKLQGHACPVLGVSFNYDESLLATSD-YQ  210 (223)
Q Consensus       134 ~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~-dg~v~iwd~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s-~d  210 (223)
                      ......+  ....++|     +++++++++. ++.|.+|++...+. .+.+..+. +......++++|++.++++++ .+
T Consensus        76 ~~~~~~p--~~i~~~~-----~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~  147 (330)
T PRK11028         76 SPLPGSP--THISTDH-----QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKE  147 (330)
T ss_pred             ecCCCCc--eEEEECC-----CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCC
Confidence            1112222  4447888     6887777664 78999999974110 12222232 223467788999998875554 57


Q ss_pred             CcEEEeeCCC
Q psy3599         211 GLIILWSREK  220 (223)
Q Consensus       211 ~~i~iwd~~~  220 (223)
                      +.|.+||+.+
T Consensus       148 ~~v~v~d~~~  157 (330)
T PRK11028        148 DRIRLFTLSD  157 (330)
T ss_pred             CEEEEEEECC
Confidence            9999999875

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.49  E-value=1.4e-05  Score=64.33  Aligned_cols=140  Identities=9%  Similarity=0.042  Sum_probs=85.1

Q ss_pred             CCcEEEEEECCCCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEe-CCCeEEEEEecCCCceEEeeeee-ccc
Q psy3599          59 TGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIA-ANAVCILKVLDKEGAVQLKRKFN-VNH  136 (223)
Q Consensus        59 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~v~i~d~~~~~~~~~~~~-~~h  136 (223)
                      .+.|..+.++.+|.+....... . ......+.|+       +++++|++++ .++  .+.+|++++...+..... ..+
T Consensus        56 ~~~i~~~~~~~~g~l~~~~~~~-~-~~~p~~i~~~-------~~g~~l~v~~~~~~--~v~v~~~~~~g~~~~~~~~~~~  124 (330)
T PRK11028         56 EFRVLSYRIADDGALTFAAESP-L-PGSPTHISTD-------HQGRFLFSASYNAN--CVSVSPLDKDGIPVAPIQIIEG  124 (330)
T ss_pred             CCcEEEEEECCCCceEEeeeec-C-CCCceEEEEC-------CCCCEEEEEEcCCC--eEEEEEECCCCCCCCceeeccC
Confidence            5667777776556553322222 1 3456789999       8998888766 355  677887753211111100 111


Q ss_pred             cCcceeEEEeeecCcccCCCcEEE-EecCCCcEEEEEcccCcccccce------eecccccCEEEEEEecCCCEEEEEeC
Q psy3599         137 KSSKYQVRSTFCPIMSFREGACVV-TGSEDSCVYFLDIQSKEHKNAVN------KLQGHACPVLGVSFNYDESLLATSDY  209 (223)
Q Consensus       137 ~~~~~~i~~~~s~~~~~~~~~~l~-sgs~dg~v~iwd~~~~~~~~~~~------~~~~h~~~v~~v~~~~~~~~l~s~s~  209 (223)
                      ...+  ..+.++|     ++++++ +...++.|.+||+.+.  +.+..      .... ......+.|+|++.++.+++.
T Consensus       125 ~~~~--~~~~~~p-----~g~~l~v~~~~~~~v~v~d~~~~--g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~  194 (330)
T PRK11028        125 LEGC--HSANIDP-----DNRTLWVPCLKEDRIRLFTLSDD--GHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNE  194 (330)
T ss_pred             CCcc--cEeEeCC-----CCCEEEEeeCCCCEEEEEEECCC--CcccccCCCceecCC-CCCCceEEECCCCCEEEEEec
Confidence            1121  3336888     677664 5556799999999761  22210      1111 234578999999999877775


Q ss_pred             -CCcEEEeeCC
Q psy3599         210 -QGLIILWSRE  219 (223)
Q Consensus       210 -d~~i~iwd~~  219 (223)
                       +++|.+||+.
T Consensus       195 ~~~~v~v~~~~  205 (330)
T PRK11028        195 LNSSVDVWQLK  205 (330)
T ss_pred             CCCEEEEEEEe
Confidence             8999999986

>KOG4532|consensus

Probab=98.47  E-value=4.1e-05  Score=58.18  Aligned_cols=119  Identities=9%  Similarity=0.088  Sum_probs=80.0

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCC-ceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecC
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEG-AVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE  164 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~-~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~  164 (223)
                      .+.++.++       +|+.+.++.++..  .|-.|.+.. ++.+..+....-++..  ....|+.     ....++++..
T Consensus       160 ~~ns~~~s-------nd~~~~~~Vgds~--~Vf~y~id~~sey~~~~~~a~t~D~g--F~~S~s~-----~~~~FAv~~Q  223 (344)
T KOG4532|consen  160 TQNSLHYS-------NDPSWGSSVGDSR--RVFRYAIDDESEYIENIYEAPTSDHG--FYNSFSE-----NDLQFAVVFQ  223 (344)
T ss_pred             ceeeeEEc-------CCCceEEEecCCC--cceEEEeCCccceeeeeEecccCCCc--eeeeecc-----CcceEEEEec
Confidence            37789999       9999999888776  565555542 2222222211222332  3335766     6889999999


Q ss_pred             CCcEEEEEcccCcccccc----eeecccccCEEEEEEecCCC--EEEEEeCCCcEEEeeCCCCC
Q psy3599         165 DSCVYFLDIQSKEHKNAV----NKLQGHACPVLGVSFNYDES--LLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       165 dg~v~iwd~~~~~~~~~~----~~~~~h~~~v~~v~~~~~~~--~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ||++.|||++.-  +.+.    .+...|++.+..+.|++.|.  +|...-.-+.+.+.|+|++.
T Consensus       224 dg~~~I~DVR~~--~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~  285 (344)
T KOG4532|consen  224 DGTCAIYDVRNM--ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV  285 (344)
T ss_pred             CCcEEEEEeccc--ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence            999999999872  2222    23356899999999998654  44444456788999988753

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.47  E-value=1.7e-05  Score=66.33  Aligned_cols=143  Identities=10%  Similarity=0.024  Sum_probs=84.3

Q ss_pred             CCcEEEEEECCCCceeeee----------eee---------ecCCCCeeEEEEeecccccCCCCeEEEEE-eCCCeEEEE
Q psy3599          59 TGVIVSILCDDLGRLSKGK----------RLV---------LSQDCPITCLSWRSWISREARDPTLLVNI-AANAVCILK  118 (223)
Q Consensus        59 ~~~i~~~~~~~~~~~~~~~----------~~~---------~~~~~~i~~l~~~~~~~~~~~~~~~l~~~-~~~~~~~v~  118 (223)
                      .+.+....|+|+|+.+...          .+.         ......+....|+       |||..|+.. +.++...+.
T Consensus       198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~S-------PDG~~La~~~~~~g~~~I~  270 (429)
T PRK03629        198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFS-------PDGSKLAFALSKTGSLNLY  270 (429)
T ss_pred             CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEEC-------CCCCEEEEEEcCCCCcEEE
Confidence            3457778889988765321          000         0112334567899       999888754 334422577


Q ss_pred             EecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCC-CcEEEE--EcccCcccccceeecccccCEEEE
Q psy3599         119 VLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSED-SCVYFL--DIQSKEHKNAVNKLQGHACPVLGV  195 (223)
Q Consensus       119 i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~d-g~v~iw--d~~~~~~~~~~~~~~~h~~~v~~v  195 (223)
                      +||.+++.... .  ..+....  ....|+|     +++.|+..+.+ +...+|  |+..   ++. ..+..+.......
T Consensus       271 ~~d~~tg~~~~-l--t~~~~~~--~~~~wSP-----DG~~I~f~s~~~g~~~Iy~~d~~~---g~~-~~lt~~~~~~~~~  336 (429)
T PRK03629        271 VMDLASGQIRQ-V--TDGRSNN--TEPTWFP-----DSQNLAYTSDQAGRPQVYKVNING---GAP-QRITWEGSQNQDA  336 (429)
T ss_pred             EEECCCCCEEE-c--cCCCCCc--CceEECC-----CCCEEEEEeCCCCCceEEEEECCC---CCe-EEeecCCCCccCE
Confidence            88988775432 2  1222221  2337999     78877666654 444444  5555   432 2333233345678


Q ss_pred             EEecCCCEEEEEeCC---CcEEEeeCCCCC
Q psy3599         196 SFNYDESLLATSDYQ---GLIILWSREKHE  222 (223)
Q Consensus       196 ~~~~~~~~l~s~s~d---~~i~iwd~~~~~  222 (223)
                      .|+|+|..++..+.+   ..|.+||+.+++
T Consensus       337 ~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~  366 (429)
T PRK03629        337 DVSSDGKFMVMVSSNGGQQHIAKQDLATGG  366 (429)
T ss_pred             EECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence            999999988876543   358889987664

>KOG1963|consensus

Probab=98.46  E-value=5e-06  Score=71.71  Aligned_cols=116  Identities=17%  Similarity=0.265  Sum_probs=89.9

Q ss_pred             ecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCC--c-eEEeeeeeccccCcceeEEE-eeecCcccCCC
Q psy3599          81 LSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEG--A-VQLKRKFNVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        81 ~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~--~-~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      .+|...+++.+++       |.+.+++++..++  .+.+|.--.  + ..-.+.+ .=|...   +.+ .|++     +|
T Consensus       202 ~~Htf~~t~~~~s-------pn~~~~Aa~d~dG--rI~vw~d~~~~~~~~t~t~l-HWH~~~---V~~L~fS~-----~G  263 (792)
T KOG1963|consen  202 VHHTFNITCVALS-------PNERYLAAGDSDG--RILVWRDFGSSDDSETCTLL-HWHHDE---VNSLSFSS-----DG  263 (792)
T ss_pred             hhhcccceeEEec-------cccceEEEeccCC--cEEEEeccccccccccceEE-Eecccc---cceeEEec-----CC
Confidence            3446678999999       9999999999888  788885322  1 1112222 246666   555 8999     89


Q ss_pred             cEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeC
Q psy3599         157 ACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      .+|++|+..|.+-+|.+.+   ++ ...+..-..+|..+.++||+...+....|+.|.+-..
T Consensus       264 ~~LlSGG~E~VLv~Wq~~T---~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  264 AYLLSGGREGVLVLWQLET---GK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA  321 (792)
T ss_pred             ceEeecccceEEEEEeecC---CC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence            9999999999999999999   55 4445556788999999999999988889999988654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.45  E-value=1.6e-05  Score=66.54  Aligned_cols=116  Identities=16%  Similarity=0.192  Sum_probs=78.4

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeC-CCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEE-E
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAA-NAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACV-V  160 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l-~  160 (223)
                      ...+.+..|+       |||+.|+..+. ++-..+.+||+.++....  + ..+...   +.. .|+|     +++.| +
T Consensus       201 ~~~v~~p~wS-------pDG~~lay~s~~~g~~~i~~~dl~~g~~~~--l-~~~~g~---~~~~~~SP-----DG~~la~  262 (435)
T PRK05137        201 SSLVLTPRFS-------PNRQEITYMSYANGRPRVYLLDLETGQREL--V-GNFPGM---TFAPRFSP-----DGRKVVM  262 (435)
T ss_pred             CCCeEeeEEC-------CCCCEEEEEEecCCCCEEEEEECCCCcEEE--e-ecCCCc---ccCcEECC-----CCCEEEE
Confidence            6789999999       99998887653 222278899998775432  1 133333   334 7999     67765 4


Q ss_pred             EecCCCc--EEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeC-CC--cEEEeeCCCC
Q psy3599         161 TGSEDSC--VYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDY-QG--LIILWSREKH  221 (223)
Q Consensus       161 sgs~dg~--v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-d~--~i~iwd~~~~  221 (223)
                      +.+.++.  |++||+.+   ++. ..+..+........|+|+|..|+..+. +|  .|.+||+..+
T Consensus       263 ~~~~~g~~~Iy~~d~~~---~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~  324 (435)
T PRK05137        263 SLSQGGNTDIYTMDLRS---GTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS  324 (435)
T ss_pred             EEecCCCceEEEEECCC---Cce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence            6666665  77778877   543 445445555677899999998887763 33  5788887654

>KOG2139|consensus

Probab=98.45  E-value=5.1e-06  Score=65.33  Aligned_cols=114  Identities=18%  Similarity=0.302  Sum_probs=80.6

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEee-----------ee-eccccCcceeEEE-eeecC
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKR-----------KF-NVNHKSSKYQVRS-TFCPI  150 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~-----------~~-~~~h~~~~~~i~~-~~s~~  150 (223)
                      ...|++++|-|      .....|+.++..+   +++|..+.......           .+ ..||    ..++. .|.+ 
T Consensus       140 QrnvtclawRP------lsaselavgCr~g---IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh----~pVtsmqwn~-  205 (445)
T KOG2139|consen  140 QRNVTCLAWRP------LSASELAVGCRAG---ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH----NPVTSMQWNE-  205 (445)
T ss_pred             hcceeEEEecc------CCcceeeeeecce---eEEEEcCcccccccccccccccchhheeCCCC----ceeeEEEEcC-
Confidence            56799999993      5666788888877   67776542211111           11 0233    22666 8999 


Q ss_pred             cccCCCcEEEEecCC-CcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeC
Q psy3599         151 MSFREGACVVTGSED-SCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       151 ~~~~~~~~l~sgs~d-g~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                          |+..+++++-+ ..|.|||..+   +..+....---+.++-+.|+||+..|..+..|+..++|..
T Consensus       206 ----dgt~l~tAS~gsssi~iWdpdt---g~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e  267 (445)
T KOG2139|consen  206 ----DGTILVTASFGSSSIMIWDPDT---GQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQE  267 (445)
T ss_pred             ----CCCEEeecccCcceEEEEcCCC---CCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehh
Confidence                79999988874 5799999998   5544433223456888999999999999999999999954

>KOG0974|consensus

Probab=98.44  E-value=2.8e-06  Score=74.50  Aligned_cols=102  Identities=14%  Similarity=0.164  Sum_probs=79.8

Q ss_pred             CCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccc
Q psy3599         101 RDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKN  180 (223)
Q Consensus       101 ~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~  180 (223)
                      ++.-++++++--+  .+-+|.+.... ....+ .||.+..  ....++.     ++.++++.|+|.++++|++.+   .+
T Consensus       143 ~~~~~i~~gsv~~--~iivW~~~~dn-~p~~l-~GHeG~i--F~i~~s~-----dg~~i~s~SdDRsiRlW~i~s---~~  208 (967)
T KOG0974|consen  143 AEELYIASGSVFG--EIIVWKPHEDN-KPIRL-KGHEGSI--FSIVTSL-----DGRYIASVSDDRSIRLWPIDS---RE  208 (967)
T ss_pred             CcEEEEEeccccc--cEEEEeccccC-Cccee-cccCCce--EEEEEcc-----CCcEEEEEecCcceeeeeccc---cc
Confidence            6677888887555  56677765221 11123 5999996  4446777     899999999999999999999   55


Q ss_pred             cce-eecccccCEEEEEEecCCCEEEEEeCCCcEEEeeC
Q psy3599         181 AVN-KLQGHACPVLGVSFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       181 ~~~-~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      ... ..-+|..+|+.+.|.|+  .++|++.|.+.++|+.
T Consensus       209 ~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~  245 (967)
T KOG0974|consen  209 VLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV  245 (967)
T ss_pred             ccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence            444 67789999999999998  8999999999999954

>KOG1517|consensus

Probab=98.41  E-value=6.6e-06  Score=72.73  Aligned_cols=111  Identities=17%  Similarity=0.214  Sum_probs=79.5

Q ss_pred             CCCeEEEEEeCCCeEEEEEecCCCce--EEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcc
Q psy3599         101 RDPTLLVNIAANAVCILKVLDKEGAV--QLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEH  178 (223)
Q Consensus       101 ~~~~~l~~~~~~~~~~v~i~d~~~~~--~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~  178 (223)
                      ..|++++.|..|+  .+++||.....  ...... ..|+.....+...+-+.    .-..|++|+.||.|++||++.. .
T Consensus      1219 ~~gn~i~AGfaDG--svRvyD~R~a~~ds~v~~~-R~h~~~~~Iv~~slq~~----G~~elvSgs~~G~I~~~DlR~~-~ 1290 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADG--SVRVYDRRMAPPDSLVCVY-REHNDVEPIVHLSLQRQ----GLGELVSGSQDGDIQLLDLRMS-S 1290 (1387)
T ss_pred             cCCceEEEeecCC--ceEEeecccCCccccceee-cccCCcccceeEEeecC----CCcceeeeccCCeEEEEecccC-c
Confidence            5679999999999  89999965321  222233 36776633266667662    1235999999999999999982 1


Q ss_pred             cccceeecccc--c-CEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         179 KNAVNKLQGHA--C-PVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       179 ~~~~~~~~~h~--~-~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      .+....+..|.  + ..+++..++...++|+|+. +.|+||++..
T Consensus      1291 ~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1291 KETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred             ccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh
Confidence            33334444444  3 4899999999999999998 9999999864

>KOG3881|consensus

Probab=98.39  E-value=1.5e-05  Score=63.21  Aligned_cols=118  Identities=14%  Similarity=0.144  Sum_probs=85.8

Q ss_pred             CCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCc----ceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcc
Q psy3599         100 ARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSS----KYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQ  174 (223)
Q Consensus       100 ~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~----~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~  174 (223)
                      +.+...+++|+...+..+++||++...++...........    +..+.. .|-+..   ....+++++.-+.+++||.+
T Consensus       158 ~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~---~~~~fat~T~~hqvR~YDt~  234 (412)
T KOG3881|consen  158 DTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGS---PNYKFATITRYHQVRLYDTR  234 (412)
T ss_pred             CCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCC---CCceEEEEecceeEEEecCc
Confidence            4566677778877555899999987755543211011000    001122 455511   27899999999999999998


Q ss_pred             cCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         175 SKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       175 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+  ..++..+.--+.+++++...|+++++.+|..-+.+..||++.++
T Consensus       235 ~q--RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k  280 (412)
T KOG3881|consen  235 HQ--RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK  280 (412)
T ss_pred             cc--CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCce
Confidence            73  57888887778899999999999999999999999999999864

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.39  E-value=2e-05  Score=65.96  Aligned_cols=116  Identities=16%  Similarity=0.146  Sum_probs=70.0

Q ss_pred             CeeEEEEeecccccCCCCeEEE-EEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecC
Q psy3599          86 PITCLSWRSWISREARDPTLLV-NIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE  164 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~-~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~  164 (223)
                      ...+..|+       |||..|+ +.+.++-..+.+||..++.... .  ..+....  ....|+|     ++..|+..+.
T Consensus       249 ~~~~~~~S-------pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-l--t~~~~~~--~~~~~sp-----DG~~l~f~sd  311 (433)
T PRK04922        249 INGAPSFS-------PDGRRLALTLSRDGNPEIYVMDLGSRQLTR-L--TNHFGID--TEPTWAP-----DGKSIYFTSD  311 (433)
T ss_pred             CccCceEC-------CCCCEEEEEEeCCCCceEEEEECCCCCeEE-C--ccCCCCc--cceEECC-----CCCEEEEEEC
Confidence            34467888       8888765 4444332257788888775332 2  2333221  2237999     7887776554


Q ss_pred             -CCc--EEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCC---cEEEeeCCCCC
Q psy3599         165 -DSC--VYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG---LIILWSREKHE  222 (223)
Q Consensus       165 -dg~--v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~---~i~iwd~~~~~  222 (223)
                       +|.  ++++|+.+   ++. ..+..+......++|+|+|..++..+.++   .|.+||+.+++
T Consensus       312 ~~g~~~iy~~dl~~---g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~  371 (433)
T PRK04922        312 RGGRPQIYRVAASG---GSA-ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS  371 (433)
T ss_pred             CCCCceEEEEECCC---CCe-EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence             454  66666665   432 22222223345689999999988765433   58999987664

>KOG4714|consensus

Probab=98.37  E-value=7.3e-07  Score=67.09  Aligned_cols=72  Identities=22%  Similarity=0.319  Sum_probs=60.2

Q ss_pred             EEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecC-CCEEEEEeCCCcEEEeeCCC
Q psy3599         143 VRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD-ESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       143 i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~  220 (223)
                      +.+ +-+|.    ..+.+++|+.||.+-+||.++.  ..+...+++|+..++.+-|+|. +..|.+++.||.+..||..+
T Consensus       182 v~~l~~hp~----qq~~v~cgt~dg~~~l~d~rn~--~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  182 VTALCSHPA----QQHLVCCGTDDGIVGLWDARNV--AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             chhhhCCcc----cccEEEEecCCCeEEEEEcccc--cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            444 45564    5788999999999999999982  3456678999999999999995 77899999999999999763

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.34  E-value=5.6e-06  Score=68.96  Aligned_cols=73  Identities=15%  Similarity=0.166  Sum_probs=58.0

Q ss_pred             cccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEE
Q psy3599         135 NHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLII  214 (223)
Q Consensus       135 ~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~  214 (223)
                      .....+  +.|+++|     +.+.++.|+.||+|.+||...   +..  .+.-+.-..+.++|+|+|.++++|+..|.+.
T Consensus       257 pL~s~v--~~ca~sp-----~E~kLvlGC~DgSiiLyD~~~---~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ  324 (545)
T PF11768_consen  257 PLPSQV--ICCARSP-----SEDKLVLGCEDGSIILYDTTR---GVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQ  324 (545)
T ss_pred             ecCCcc--eEEecCc-----ccceEEEEecCCeEEEEEcCC---Cee--eeeeecccceEEEEcCCCcEEEEEcCCceEE
Confidence            344443  5558999     799999999999999999887   422  2222345678899999999999999999999


Q ss_pred             EeeCC
Q psy3599         215 LWSRE  219 (223)
Q Consensus       215 iwd~~  219 (223)
                      +||+.
T Consensus       325 ~FD~A  329 (545)
T PF11768_consen  325 CFDMA  329 (545)
T ss_pred             EEEee
Confidence            99975

>KOG0322|consensus

Probab=98.34  E-value=6.6e-06  Score=62.15  Aligned_cols=126  Identities=16%  Similarity=0.186  Sum_probs=78.5

Q ss_pred             CCCeeEEEEeecccccCCCCeE-EEEEeCCCeEEEEEecCCCceEEeeee--------eccccCcceeEEEeeecCcccC
Q psy3599          84 DCPITCLSWRSWISREARDPTL-LVNIAANAVCILKVLDKEGAVQLKRKF--------NVNHKSSKYQVRSTFCPIMSFR  154 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~-l~~~~~~~~~~v~i~d~~~~~~~~~~~--------~~~h~~~~~~i~~~~s~~~~~~  154 (223)
                      .+.+.+..+.=     .....+ |+.|-.++  .+.+||.+++..+....        ...|...+  +...|.+.    
T Consensus       150 lgsvmc~~~~~-----~c~s~~lllaGyEsg--hvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpv--lsldyas~----  216 (323)
T KOG0322|consen  150 LGSVMCQDKDH-----ACGSTFLLLAGYESG--HVVIWDLSTGDKIIQLPQSSKVESPNASHKQPV--LSLDYASS----  216 (323)
T ss_pred             cCceeeeeccc-----cccceEEEEEeccCC--eEEEEEccCCceeeccccccccccchhhccCcc--eeeeechh----
Confidence            45666766530     022333 44555788  78899999873332210        03455553  33356552    


Q ss_pred             CCcEEEEecCCCcEEEEEcccCc-ccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCCC
Q psy3599         155 EGACVVTGSEDSCVYFLDIQSKE-HKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHEP  223 (223)
Q Consensus       155 ~~~~l~sgs~dg~v~iwd~~~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~  223 (223)
                       -+.=++|+.+..+.+|.+.... ..+.-..++-.+..|..+...||+.++||++.|+.||+|..++..|
T Consensus       217 -~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p  285 (323)
T KOG0322|consen  217 -CDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP  285 (323)
T ss_pred             -hcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc
Confidence             3333667777788888887521 0111122222234588899999999999999999999999998765

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.34  E-value=5.2e-05  Score=63.52  Aligned_cols=142  Identities=8%  Similarity=0.067  Sum_probs=85.6

Q ss_pred             ccCCcEEEEEECCCCceeeee--------------------eeeecCCCCeeEEEEeecccccCCCCeEEE-EEeCCCeE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK--------------------RLVLSQDCPITCLSWRSWISREARDPTLLV-NIAANAVC  115 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~--------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~-~~~~~~~~  115 (223)
                      .+.+.+....|+|+|+.+...                    .+... ...+....|+       |||..|+ +.+.++-.
T Consensus       199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-~g~~~~~~~S-------PDG~~la~~~~~~g~~  270 (435)
T PRK05137        199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF-PGMTFAPRFS-------PDGRKVVMSLSQGGNT  270 (435)
T ss_pred             cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-CCcccCcEEC-------CCCCEEEEEEecCCCc
Confidence            345678888899988754321                    11111 3456678898       8998765 44444422


Q ss_pred             EEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecC-CC--cEEEEEcccCcccccceeecccccCE
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE-DS--CVYFLDIQSKEHKNAVNKLQGHACPV  192 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~-dg--~v~iwd~~~~~~~~~~~~~~~h~~~v  192 (223)
                      .+.++|..++.... .  ..+....  ....|+|     ++..|+..+. +|  .|+++|...   ++. ..+..+...+
T Consensus       271 ~Iy~~d~~~~~~~~-L--t~~~~~~--~~~~~sp-----DG~~i~f~s~~~g~~~Iy~~d~~g---~~~-~~lt~~~~~~  336 (435)
T PRK05137        271 DIYTMDLRSGTTTR-L--TDSPAID--TSPSYSP-----DGSQIVFESDRSGSPQLYVMNADG---SNP-RRISFGGGRY  336 (435)
T ss_pred             eEEEEECCCCceEE-c--cCCCCcc--CceeEcC-----CCCEEEEEECCCCCCeEEEEECCC---CCe-EEeecCCCcc
Confidence            45566877764332 2  2333321  2237999     7887776653 33  578888766   433 3333234456


Q ss_pred             EEEEEecCCCEEEEEeCC---CcEEEeeCCC
Q psy3599         193 LGVSFNYDESLLATSDYQ---GLIILWSREK  220 (223)
Q Consensus       193 ~~v~~~~~~~~l~s~s~d---~~i~iwd~~~  220 (223)
                      ....|+|+|..|+..+.+   ..|.+||+..
T Consensus       337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~  367 (435)
T PRK05137        337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDG  367 (435)
T ss_pred             cCeEECCCCCEEEEEEcCCCceEEEEEECCC
Confidence            678899999998877643   3577888754

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.33  E-value=3.6e-05  Score=64.32  Aligned_cols=146  Identities=14%  Similarity=0.149  Sum_probs=80.0

Q ss_pred             cCCcEEEEEECCCCceeeee----------eeee---------cCCCCeeEEEEeecccccCCCCeEEE-EEeCCCeEEE
Q psy3599          58 STGVIVSILCDDLGRLSKGK----------RLVL---------SQDCPITCLSWRSWISREARDPTLLV-NIAANAVCIL  117 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~----------~~~~---------~~~~~i~~l~~~~~~~~~~~~~~~l~-~~~~~~~~~v  117 (223)
                      +.+.+....|+|+|+.+...          .+..         .....+....|+       |||..|+ +.+.++...+
T Consensus       194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~S-------PDG~~la~~~~~~g~~~I  266 (427)
T PRK02889        194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWS-------PDGRTLAVALSRDGNSQI  266 (427)
T ss_pred             CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEEC-------CCCCEEEEEEccCCCceE
Confidence            34556677888877654321          0010         112344567888       8998776 4555551123


Q ss_pred             EEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecC-CCcEEEEEcccCcccccceeecccccCEEEEE
Q psy3599         118 KVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE-DSCVYFLDIQSKEHKNAVNKLQGHACPVLGVS  196 (223)
Q Consensus       118 ~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~-dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~  196 (223)
                      .++|..++. +.. + ..+....  ....|+|     ++..|+..+. +|...+|.+.... +.. ..+..+........
T Consensus       267 y~~d~~~~~-~~~-l-t~~~~~~--~~~~wSp-----DG~~l~f~s~~~g~~~Iy~~~~~~-g~~-~~lt~~g~~~~~~~  334 (427)
T PRK02889        267 YTVNADGSG-LRR-L-TQSSGID--TEPFFSP-----DGRSIYFTSDRGGAPQIYRMPASG-GAA-QRVTFTGSYNTSPR  334 (427)
T ss_pred             EEEECCCCC-cEE-C-CCCCCCC--cCeEEcC-----CCCEEEEEecCCCCcEEEEEECCC-Cce-EEEecCCCCcCceE
Confidence            333554443 222 2 1333221  2237999     7887765554 4666666654210 322 11111222344678


Q ss_pred             EecCCCEEEEEeCCC---cEEEeeCCCCC
Q psy3599         197 FNYDESLLATSDYQG---LIILWSREKHE  222 (223)
Q Consensus       197 ~~~~~~~l~s~s~d~---~i~iwd~~~~~  222 (223)
                      |+|+|+.++..+.++   .|.+||+.+++
T Consensus       335 ~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~  363 (427)
T PRK02889        335 ISPDGKLLAYISRVGGAFKLYVQDLATGQ  363 (427)
T ss_pred             ECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence            999999998777554   59999987654

>KOG2695|consensus

Probab=98.29  E-value=1.6e-06  Score=67.73  Aligned_cols=117  Identities=15%  Similarity=0.208  Sum_probs=80.9

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCc-----eEEeeeeeccccCcceeEEE-eeecCcccCCCc
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGA-----VQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGA  157 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~-----~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~  157 (223)
                      ...|.++.|.       ..+.++..|+.++  .|...|+..+     .....   ..|...+..+.. .|       ++.
T Consensus       252 ksDVfAlQf~-------~s~nLv~~GcRng--eI~~iDLR~rnqG~~~~a~r---lyh~Ssvtslq~Lq~-------s~q  312 (425)
T KOG2695|consen  252 KSDVFALQFA-------GSDNLVFNGCRNG--EIFVIDLRCRNQGNGWCAQR---LYHDSSVTSLQILQF-------SQQ  312 (425)
T ss_pred             chhHHHHHhc-------ccCCeeEecccCC--cEEEEEeeecccCCCcceEE---EEcCcchhhhhhhcc-------ccc
Confidence            4567788888       7788888888887  6666776543     22221   345555311221 22       477


Q ss_pred             EEEEecCCCcEEEEEcccCccccc---ceeecccccCEEEE--EEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         158 CVVTGSEDSCVYFLDIQSKEHKNA---VNKLQGHACPVLGV--SFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       158 ~l~sgs~dg~v~iwd~~~~~~~~~---~~~~~~h~~~v~~v--~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +|.+.+.+|.|++||.+.   -++   +..+.+|...-.-+  -.++....+++++.|...|||.++.++
T Consensus       313 ~LmaS~M~gkikLyD~R~---~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  313 KLMASDMTGKIKLYDLRA---TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             eEeeccCcCceeEeeehh---hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence            888889999999999997   556   88888886533222  234566778889999999999998654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.26  E-value=7e-05  Score=62.57  Aligned_cols=116  Identities=16%  Similarity=0.183  Sum_probs=73.9

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeC-CCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEE-E
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAA-NAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVV-T  161 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~-s  161 (223)
                      ...+.+.+|+       |||+.|+..+. ++...+.+||+.++.....   .......  ....|+|     ++..|+ +
T Consensus       195 ~~~v~~p~wS-------PDG~~la~~s~~~~~~~I~~~dl~~g~~~~l---~~~~g~~--~~~~~SP-----DG~~la~~  257 (427)
T PRK02889        195 PEPIISPAWS-------PDGTKLAYVSFESKKPVVYVHDLATGRRRVV---ANFKGSN--SAPAWSP-----DGRTLAVA  257 (427)
T ss_pred             CCCcccceEc-------CCCCEEEEEEccCCCcEEEEEECCCCCEEEe---ecCCCCc--cceEECC-----CCCEEEEE
Confidence            6788999999       99998887663 2222578899987754321   1222221  2237999     677665 6


Q ss_pred             ecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeC-CCcEEEeeC
Q psy3599         162 GSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDY-QGLIILWSR  218 (223)
Q Consensus       162 gs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-d~~i~iwd~  218 (223)
                      .+.+|...+|.+.... +. +..+..+........|+|||..|+..+. ++...||.+
T Consensus       258 ~~~~g~~~Iy~~d~~~-~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~  313 (427)
T PRK02889        258 LSRDGNSQIYTVNADG-SG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRM  313 (427)
T ss_pred             EccCCCceEEEEECCC-CC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEE
Confidence            7778876666654310 33 4445545555567889999998876664 456666654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.26  E-value=7.6e-05  Score=62.00  Aligned_cols=116  Identities=16%  Similarity=0.211  Sum_probs=71.9

Q ss_pred             CCeeEEEEeecccccCCCCeEEE-EEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec
Q psy3599          85 CPITCLSWRSWISREARDPTLLV-NIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS  163 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~-~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs  163 (223)
                      ..+.++.|+       +++..|+ +.+.++...+.+|+..++.... .  ..+....  ....|+|     ++..|+..+
T Consensus       234 ~~~~~~~~s-------pDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l--~~~~~~~--~~~~~s~-----dg~~l~~~s  296 (417)
T TIGR02800       234 GMNGAPAFS-------PDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-L--TNGPGID--TEPSWSP-----DGKSIAFTS  296 (417)
T ss_pred             CCccceEEC-------CCCCEEEEEECCCCCccEEEEECCCCCEEE-C--CCCCCCC--CCEEECC-----CCCEEEEEE
Confidence            345568888       8887665 4443332256677887664322 2  1332221  2226888     787776554


Q ss_pred             C-CC--cEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCC---cEEEeeCCCC
Q psy3599         164 E-DS--CVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG---LIILWSREKH  221 (223)
Q Consensus       164 ~-dg--~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~---~i~iwd~~~~  221 (223)
                      . ++  .|+++|+..   ++. ..+..+...+..+.|+|++..++.++.++   .|.+||+.++
T Consensus       297 ~~~g~~~iy~~d~~~---~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~  356 (417)
T TIGR02800       297 DRGGSPQIYMMDADG---GEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG  356 (417)
T ss_pred             CCCCCceEEEEECCC---CCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence            4 33  577778776   443 23333445567889999999998888765   7888888764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1963|consensus

Probab=98.25  E-value=4.7e-05  Score=65.89  Aligned_cols=116  Identities=15%  Similarity=0.174  Sum_probs=87.7

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS  163 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs  163 (223)
                      ..+|.++.|+       .+|.+|.+|+..+  .+-+|...++.  +++++ .-....  +.+.++|     ++++.+...
T Consensus       251 ~~~V~~L~fS-------~~G~~LlSGG~E~--VLv~Wq~~T~~--kqfLP-RLgs~I--~~i~vS~-----ds~~~sl~~  311 (792)
T KOG1963|consen  251 HDEVNSLSFS-------SDGAYLLSGGREG--VLVLWQLETGK--KQFLP-RLGSPI--LHIVVSP-----DSDLYSLVL  311 (792)
T ss_pred             ccccceeEEe-------cCCceEeecccce--EEEEEeecCCC--ccccc-ccCCee--EEEEEcC-----CCCeEEEEe
Confidence            6799999999       9999999999988  78889998876  33433 333332  4458999     799999999


Q ss_pred             CCCcEEEEEcccCcccccceeecc-----------cccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         164 EDSCVYFLDIQSKEHKNAVNKLQG-----------HACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       164 ~dg~v~iwd~~~~~~~~~~~~~~~-----------h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      +|..|.+-....   .+....+.+           ..+-.+.++++|.-+.++-.+..|.|.+||+-+.
T Consensus       312 ~DNqI~li~~~d---l~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td  377 (792)
T KOG1963|consen  312 EDNQIHLIKASD---LEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTD  377 (792)
T ss_pred             cCceEEEEeccc---hhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccc
Confidence            999999887654   333332221           2345678889998788888889999999998764

>KOG0309|consensus

Probab=98.23  E-value=2.2e-06  Score=72.99  Aligned_cols=122  Identities=15%  Similarity=0.241  Sum_probs=89.1

Q ss_pred             eecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEE
Q psy3599          80 VLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACV  159 (223)
Q Consensus        80 ~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l  159 (223)
                      -+| ...|+++-|.      +.....+++++-+.  .+..||+.+.....-.+..-|...   -...|+-.    ++..+
T Consensus       111 hgh-sraitd~n~~------~q~pdVlatcsvdt--~vh~wd~rSp~~p~ys~~~w~s~a---sqVkwnyk----~p~vl  174 (1081)
T KOG0309|consen  111 HGH-SRAITDINFN------PQHPDVLATCSVDT--YVHAWDMRSPHRPFYSTSSWRSAA---SQVKWNYK----DPNVL  174 (1081)
T ss_pred             ecC-ccceeccccC------CCCCcceeeccccc--cceeeeccCCCcceeeeecccccC---ceeeeccc----Ccchh
Confidence            345 7899999998      46778999999888  899999886644333332233333   22246553    45555


Q ss_pred             EEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecC-CCEEEEEeCCCcEEEeeCCC
Q psy3599         160 VTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD-ESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       160 ~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~  220 (223)
                      + .+...-|.+||.+..  +.++..+++|...|+.+.|+.- ...+.+++.|++|+.||..+
T Consensus       175 a-sshg~~i~vwd~r~g--s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  175 A-SSHGNDIFVWDLRKG--STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             h-hccCCceEEEeccCC--CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence            4 456667999999973  5788999999999999999874 45678888999999999864

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.22  E-value=3.1e-05  Score=63.27  Aligned_cols=105  Identities=17%  Similarity=0.277  Sum_probs=72.6

Q ss_pred             eEE-EEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccc
Q psy3599         104 TLL-VNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAV  182 (223)
Q Consensus       104 ~~l-~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~  182 (223)
                      +++ ++-.+++  .+.+.|..+.+.+.. +..+.. ..  ....|+|     ++.+++..+.||.|.++|+.+   .+.+
T Consensus         6 ~l~~V~~~~~~--~v~viD~~t~~~~~~-i~~~~~-~h--~~~~~s~-----Dgr~~yv~~rdg~vsviD~~~---~~~v   71 (369)
T PF02239_consen    6 NLFYVVERGSG--SVAVIDGATNKVVAR-IPTGGA-PH--AGLKFSP-----DGRYLYVANRDGTVSVIDLAT---GKVV   71 (369)
T ss_dssp             GEEEEEEGGGT--EEEEEETTT-SEEEE-EE-STT-EE--EEEE-TT------SSEEEEEETTSEEEEEETTS---SSEE
T ss_pred             cEEEEEecCCC--EEEEEECCCCeEEEE-EcCCCC-ce--eEEEecC-----CCCEEEEEcCCCeEEEEECCc---ccEE
Confidence            444 4555666  788889988876664 322322 11  3336888     799999899999999999999   8888


Q ss_pred             eeecccccCEEEEEEecCCCEEEEEe-CCCcEEEeeCCCCCC
Q psy3599         183 NKLQGHACPVLGVSFNYDESLLATSD-YQGLIILWSREKHEP  223 (223)
Q Consensus       183 ~~~~~h~~~v~~v~~~~~~~~l~s~s-~d~~i~iwd~~~~~~  223 (223)
                      ..++.... ...++++++|.++++++ ..+.+.++|.++.++
T Consensus        72 ~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~  112 (369)
T PF02239_consen   72 ATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP  112 (369)
T ss_dssp             EEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--E
T ss_pred             EEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccc
Confidence            88886444 67899999999888776 689999999887653

...

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.21  E-value=0.00011  Score=61.45  Aligned_cols=116  Identities=16%  Similarity=0.235  Sum_probs=73.6

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeC-CCeEEEEEecCCCceEEee-eeeccccCcceeEEEeeecCcccCCCcEEEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAA-NAVCILKVLDKEGAVQLKR-KFNVNHKSSKYQVRSTFCPIMSFREGACVVT  161 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~v~i~d~~~~~~~~~-~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~s  161 (223)
                      ...+.+..|+       |||+.|+..+. ++-..+.++++.++..... .+. ++...     ..|+|     ++..|+.
T Consensus       198 ~~~~~~p~wS-------PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~-~~~~~-----~~~SP-----DG~~La~  259 (429)
T PRK03629        198 PQPLMSPAWS-------PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-RHNGA-----PAFSP-----DGSKLAF  259 (429)
T ss_pred             CCceeeeEEc-------CCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC-CCcCC-----eEECC-----CCCEEEE
Confidence            5688999999       99998886542 2222677888877643221 111 22221     26999     7876664


Q ss_pred             -ecCCC--cEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCC-CcEEEe--eCCCC
Q psy3599         162 -GSEDS--CVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQ-GLIILW--SREKH  221 (223)
Q Consensus       162 -gs~dg--~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d-~~i~iw--d~~~~  221 (223)
                       .+.+|  .|++||+.+   ++.. .+..+...+....|+|+|..|+..+.+ +...||  |+.++
T Consensus       260 ~~~~~g~~~I~~~d~~t---g~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g  321 (429)
T PRK03629        260 ALSKTGSLNLYVMDLAS---GQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG  321 (429)
T ss_pred             EEcCCCCcEEEEEECCC---CCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC
Confidence             34455  488999987   5543 333344457789999999988877653 444444  65544

>KOG1409|consensus

Probab=98.21  E-value=2.1e-05  Score=61.53  Aligned_cols=76  Identities=25%  Similarity=0.435  Sum_probs=64.1

Q ss_pred             cccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcE
Q psy3599         135 NHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLI  213 (223)
Q Consensus       135 ~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i  213 (223)
                      +|.+.   +.+ .|.|     ....+.+|..|..+.+||+.-.  ....+.+.+|...|..+...+--..+.+++.||.|
T Consensus       195 ~h~~~---~~~l~Wd~-----~~~~LfSg~~d~~vi~wdigg~--~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i  264 (404)
T KOG1409|consen  195 GHTGE---VTCLKWDP-----GQRLLFSGASDHSVIMWDIGGR--KGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGI  264 (404)
T ss_pred             Ccccc---eEEEEEcC-----CCcEEEeccccCceEEEeccCC--cceeeeeccchhhhhhhhhhhhheeeeeccCCCeE
Confidence            66666   666 8988     6899999999999999999862  34567788999999999888878889999999999


Q ss_pred             EEeeCCC
Q psy3599         214 ILWSREK  220 (223)
Q Consensus       214 ~iwd~~~  220 (223)
                      -+||...
T Consensus       265 ~~w~mn~  271 (404)
T KOG1409|consen  265 VVWNMNV  271 (404)
T ss_pred             EEEeccc
Confidence            9999754

>KOG4547|consensus

Probab=98.20  E-value=2.8e-05  Score=64.58  Aligned_cols=107  Identities=16%  Similarity=0.132  Sum_probs=85.7

Q ss_pred             CCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCccc
Q psy3599         101 RDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHK  179 (223)
Q Consensus       101 ~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~  179 (223)
                      .+...++-|...+  .|-+|+...++.-...-.-+|.+.   +.+ .++-     +-..|.+++.|+.+..|+...   .
T Consensus        68 ~~t~~lvlgt~~g--~v~~ys~~~g~it~~~st~~h~~~---v~~~~~~~-----~~~ciyS~~ad~~v~~~~~~~---~  134 (541)
T KOG4547|consen   68 LDTSMLVLGTPQG--SVLLYSVAGGEITAKLSTDKHYGN---VNEILDAQ-----RLGCIYSVGADLKVVYILEKE---K  134 (541)
T ss_pred             CCceEEEeecCCc--cEEEEEecCCeEEEEEecCCCCCc---ceeeeccc-----ccCceEecCCceeEEEEeccc---c
Confidence            4556777777777  778888887765443332456666   555 4454     678999999999999999999   8


Q ss_pred             ccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         180 NAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       180 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ..++.+++.+..+.+++.+||+.++++++  +.|++||+++++
T Consensus       135 ~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~ke  175 (541)
T KOG4547|consen  135 VIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKE  175 (541)
T ss_pred             eeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCce
Confidence            89999999888999999999999999986  679999998875

>KOG4190|consensus

Probab=98.18  E-value=1e-05  Score=67.17  Aligned_cols=144  Identities=13%  Similarity=0.096  Sum_probs=94.5

Q ss_pred             CCcEEEEEECCCCceeeee----eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeec
Q psy3599          59 TGVIVSILCDDLGRLSKGK----RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNV  134 (223)
Q Consensus        59 ~~~i~~~~~~~~~~~~~~~----~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~  134 (223)
                      +..|..++..|+|.-+.+.    .++.| ..+|.++.|.       .+.++++++ +++   +++||.=-+..+......
T Consensus       756 DKTVKLWSik~EgD~~~tsaCQfTY~aH-kk~i~~igfL-------~~lr~i~Sc-D~g---iHlWDPFigr~Laq~~da  823 (1034)
T KOG4190|consen  756 DKTVKLWSIKPEGDEIGTSACQFTYQAH-KKPIHDIGFL-------ADLRSIASC-DGG---IHLWDPFIGRLLAQMEDA  823 (1034)
T ss_pred             CceEEEEEeccccCccccceeeeEhhhc-cCcccceeee-------eccceeeec-cCc---ceeecccccchhHhhhcC
Confidence            3444444555544333322    45566 8999999999       888888876 344   788997545433211111


Q ss_pred             cccCcceeEEEeeecCcccCCCcEEEEe-cCCCcEEEEEcccCcccccceeec-----ccccCEEEEEEecCCCEEEEEe
Q psy3599         135 NHKSSKYQVRSTFCPIMSFREGACVVTG-SEDSCVYFLDIQSKEHKNAVNKLQ-----GHACPVLGVSFNYDESLLATSD  208 (223)
Q Consensus       135 ~h~~~~~~i~~~~s~~~~~~~~~~l~sg-s~dg~v~iwd~~~~~~~~~~~~~~-----~h~~~v~~v~~~~~~~~l~s~s  208 (223)
                      ...+....+.|.=+.     +...+++| +...+|+++|.+.   .+....++     +.+..+.+++..+.|+.++.+-
T Consensus       824 pk~~a~~~ikcl~nv-----~~~iliAgcsaeSTVKl~DaRs---ce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~L  895 (1034)
T KOG4190|consen  824 PKEGAGGNIKCLENV-----DRHILIAGCSAESTVKLFDARS---CEWTCELKVCNAPGPNALTRAIAVADKGNKLAAAL  895 (1034)
T ss_pred             cccCCCceeEecccC-----cchheeeeccchhhheeeeccc---ccceeeEEeccCCCCchheeEEEeccCcchhhHHh
Confidence            122222225542222     34555555 7788999999998   76666554     3345688999999999999999


Q ss_pred             CCCcEEEeeCCCCC
Q psy3599         209 YQGLIILWSREKHE  222 (223)
Q Consensus       209 ~d~~i~iwd~~~~~  222 (223)
                      .+|.|-+.|.|+|+
T Consensus       896 SnGci~~LDaR~G~  909 (1034)
T KOG4190|consen  896 SNGCIAILDARNGK  909 (1034)
T ss_pred             cCCcEEEEecCCCc
Confidence            99999999999986

>KOG1064|consensus

Probab=98.15  E-value=6e-06  Score=76.51  Aligned_cols=107  Identities=15%  Similarity=0.289  Sum_probs=80.2

Q ss_pred             eeecCCCCeeEEEEeecccccCCCCeEEEEEe---CCCeEEEEEecCC--CceEEeeeeeccccCcceeEEE-eeecCcc
Q psy3599          79 LVLSQDCPITCLSWRSWISREARDPTLLVNIA---ANAVCILKVLDKE--GAVQLKRKFNVNHKSSKYQVRS-TFCPIMS  152 (223)
Q Consensus        79 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~---~~~~~~v~i~d~~--~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~  152 (223)
                      ++.| .....++.|-         +.++++++   +++  .+.+||..  +...+..   ..|...   .++ ++.|   
T Consensus      2288 ~qch-nk~~~Df~Fi---------~s~~~tag~s~d~~--n~~lwDtl~~~~~s~v~---~~H~~g---aT~l~~~P--- 2346 (2439)
T KOG1064|consen 2288 WQCH-NKALSDFRFI---------GSLLATAGRSSDNR--NVCLWDTLLPPMNSLVH---TCHDGG---ATVLAYAP--- 2346 (2439)
T ss_pred             cccC-Cccccceeee---------ehhhhccccCCCCC--cccchhcccCcccceee---eecCCC---ceEEEEcC---
Confidence            4445 6667777776         36666654   455  78999954  2222222   588888   555 8999   


Q ss_pred             cCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         153 FREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       153 ~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                        ...++++|+.+|.|++||++.   .++++.++.         +. ...+|++|+..|.++||++...
T Consensus      2347 --~~qllisggr~G~v~l~D~rq---rql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2347 --KHQLLISGGRKGEVCLFDIRQ---RQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             --cceEEEecCCcCcEEEeehHH---HHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence              799999999999999999999   888777775         33 5678999999999999998653

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.15  E-value=0.00013  Score=61.01  Aligned_cols=117  Identities=18%  Similarity=0.215  Sum_probs=76.0

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeC-CCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEE-EE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAA-NAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACV-VT  161 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l-~s  161 (223)
                      ...+.+..|+       ||++.|+..+. ++-..+.+||+.++.....   .......  ....|+|     ++..+ ++
T Consensus       203 ~~~v~~p~wS-------pDg~~la~~s~~~~~~~l~~~dl~~g~~~~l---~~~~g~~--~~~~~Sp-----DG~~l~~~  265 (433)
T PRK04922        203 AEPILSPAWS-------PDGKKLAYVSFERGRSAIYVQDLATGQRELV---ASFRGIN--GAPSFSP-----DGRRLALT  265 (433)
T ss_pred             CCccccccCC-------CCCCEEEEEecCCCCcEEEEEECCCCCEEEe---ccCCCCc--cCceECC-----CCCEEEEE
Confidence            6678899999       99998887763 2222577889887754321   1222221  2226999     67655 45


Q ss_pred             ecCCC--cEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeC-CCc--EEEeeCCCC
Q psy3599         162 GSEDS--CVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDY-QGL--IILWSREKH  221 (223)
Q Consensus       162 gs~dg--~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-d~~--i~iwd~~~~  221 (223)
                      .+.+|  .|++||+.+   ++. ..+..+......++|+|+|..|+.++. +|.  |.++|+.++
T Consensus       266 ~s~~g~~~Iy~~d~~~---g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g  326 (433)
T PRK04922        266 LSRDGNPEIYVMDLGS---RQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG  326 (433)
T ss_pred             EeCCCCceEEEEECCC---CCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            55555  599999988   553 344445545567899999998887763 444  666676554

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.14  E-value=1.4e-05  Score=42.81  Aligned_cols=31  Identities=32%  Similarity=0.613  Sum_probs=27.7

Q ss_pred             ccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEE
Q psy3599         134 VNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLD  172 (223)
Q Consensus       134 ~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd  172 (223)
                      .+|...   +.+ +|+|     ++.++++|+.|+.|++||
T Consensus         8 ~~h~~~---i~~i~~~~-----~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    8 RGHSSS---INSIAWSP-----DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             ESSSSS---EEEEEEET-----TSSEEEEEETTSEEEEEE
T ss_pred             cCCCCc---EEEEEEec-----ccccceeeCCCCEEEEEC
Confidence            489888   666 8999     799999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4497|consensus

Probab=98.13  E-value=8.8e-06  Score=63.39  Aligned_cols=110  Identities=16%  Similarity=0.198  Sum_probs=79.2

Q ss_pred             EEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCC-cEEEEecCCCc
Q psy3599          89 CLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREG-ACVVTGSEDSC  167 (223)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~-~~l~sgs~dg~  167 (223)
                      -.+|+       |+|++++++++..   +-|.|..+-+ +...|. .-...   +...|..     +. ..+.....|+.
T Consensus        13 ~c~fS-------p~g~yiAs~~~yr---lviRd~~tlq-~~qlf~-cldki---~yieW~a-----ds~~ilC~~yk~~~   72 (447)
T KOG4497|consen   13 FCSFS-------PCGNYIASLSRYR---LVIRDSETLQ-LHQLFL-CLDKI---VYIEWKA-----DSCHILCVAYKDPK   72 (447)
T ss_pred             ceeEC-------CCCCeeeeeeeeE---EEEeccchhh-HHHHHH-HHHHh---hheeeec-----cceeeeeeeeccce
Confidence            46788       9999999998765   4567777653 222321 21111   2234655     34 44556677889


Q ss_pred             EEEEEcccCcccccceeecccccCEEEEEEecCCC-EEEEEeCCCcEEEeeCCCC
Q psy3599         168 VYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDES-LLATSDYQGLIILWSREKH  221 (223)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~d~~i~iwd~~~~  221 (223)
                      |.+|++..   .+-..++.....++.+++|+|+|+ +|.+...|-.|.+|.+.+.
T Consensus        73 vqvwsl~Q---pew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~  124 (447)
T KOG4497|consen   73 VQVWSLVQ---PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ  124 (447)
T ss_pred             EEEEEeec---ceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc
Confidence            99999999   888888987778899999999994 5666778999999998764

>smart00320 WD40 WD40 repeats

Probab=98.09  E-value=9.3e-06  Score=42.27  Aligned_cols=39  Identities=36%  Similarity=0.641  Sum_probs=34.3

Q ss_pred             cccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEee
Q psy3599         179 KNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWS  217 (223)
Q Consensus       179 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd  217 (223)
                      .+++..+..|...|.++.|++++..+++++.|+.+++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG3914|consensus

Probab=98.08  E-value=1.1e-05  Score=64.15  Aligned_cols=83  Identities=12%  Similarity=0.159  Sum_probs=62.8

Q ss_pred             ecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEE
Q psy3599          81 LSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVV  160 (223)
Q Consensus        81 ~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~  160 (223)
                      +| ...+++++|+       +|+++|+++..|.  .|++-.......+...+ .||+..+  -+.+..      ++..|+
T Consensus       149 Gh-vSml~dVavS-------~D~~~IitaDRDE--kIRvs~ypa~f~Iesfc-lGH~eFV--S~isl~------~~~~Ll  209 (390)
T KOG3914|consen  149 GH-VSMLLDVAVS-------PDDQFIITADRDE--KIRVSRYPATFVIESFC-LGHKEFV--STISLT------DNYLLL  209 (390)
T ss_pred             hh-hhhhheeeec-------CCCCEEEEecCCc--eEEEEecCcccchhhhc-cccHhhe--eeeeec------cCceee
Confidence            45 7789999999       9999999999888  77775555444444444 6999885  222444      477899


Q ss_pred             EecCCCcEEEEEcccCcccccceee
Q psy3599         161 TGSEDSCVYFLDIQSKEHKNAVNKL  185 (223)
Q Consensus       161 sgs~dg~v~iwd~~~~~~~~~~~~~  185 (223)
                      +||-|+++++||+.+   ++++..+
T Consensus       210 S~sGD~tlr~Wd~~s---gk~L~t~  231 (390)
T KOG3914|consen  210 SGSGDKTLRLWDITS---GKLLDTC  231 (390)
T ss_pred             ecCCCCcEEEEeccc---CCccccc
Confidence            999999999999999   7666554

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.05  E-value=0.00045  Score=57.75  Aligned_cols=144  Identities=14%  Similarity=0.088  Sum_probs=80.7

Q ss_pred             cCCcEEEEEECCCCceeeee--------ee--ee---------cCCCCeeEEEEeecccccCCCCeEEE-EEeCCCeEEE
Q psy3599          58 STGVIVSILCDDLGRLSKGK--------RL--VL---------SQDCPITCLSWRSWISREARDPTLLV-NIAANAVCIL  117 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~--------~~--~~---------~~~~~i~~l~~~~~~~~~~~~~~~l~-~~~~~~~~~v  117 (223)
                      +...+....|+|+|+.+...        .+  ..         .....+....|+       |||+.|+ +.+.++-..+
T Consensus       197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~S-------pDG~~la~~~~~~g~~~I  269 (430)
T PRK00178        197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWS-------PDGSKLAFVLSKDGNPEI  269 (430)
T ss_pred             CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEEC-------CCCCEEEEEEccCCCceE
Confidence            34456777888877654321        00  00         112234467888       8998777 4443432256


Q ss_pred             EEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec-CCC--cEEEEEcccCcccccceeecccccCEEE
Q psy3599         118 KVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS-EDS--CVYFLDIQSKEHKNAVNKLQGHACPVLG  194 (223)
Q Consensus       118 ~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs-~dg--~v~iwd~~~~~~~~~~~~~~~h~~~v~~  194 (223)
                      .++|..++.... .  ..+....  ....|+|     ++..++..+ .+|  .|+++|+.+   ++... +.........
T Consensus       270 y~~d~~~~~~~~-l--t~~~~~~--~~~~~sp-----Dg~~i~f~s~~~g~~~iy~~d~~~---g~~~~-lt~~~~~~~~  335 (430)
T PRK00178        270 YVMDLASRQLSR-V--TNHPAID--TEPFWGK-----DGRTLYFTSDRGGKPQIYKVNVNG---GRAER-VTFVGNYNAR  335 (430)
T ss_pred             EEEECCCCCeEE-c--ccCCCCc--CCeEECC-----CCCEEEEEECCCCCceEEEEECCC---CCEEE-eecCCCCccc
Confidence            677888764332 2  1333221  2236898     677665544 344  477777766   44322 1111122345


Q ss_pred             EEEecCCCEEEEEeCC-C--cEEEeeCCCCC
Q psy3599         195 VSFNYDESLLATSDYQ-G--LIILWSREKHE  222 (223)
Q Consensus       195 v~~~~~~~~l~s~s~d-~--~i~iwd~~~~~  222 (223)
                      ..|+|+|..++..+.+ +  .|.+||+.+++
T Consensus       336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~  366 (430)
T PRK00178        336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGS  366 (430)
T ss_pred             eEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence            7899999988877643 3  47888987654

>KOG4714|consensus

Probab=98.05  E-value=2.3e-05  Score=59.25  Aligned_cols=116  Identities=16%  Similarity=0.137  Sum_probs=76.9

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEe
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTG  162 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sg  162 (223)
                      ...|++++-+      |....++++|++++  .+-+||..........+ ..|....   .. .|+|.    ++..|+++
T Consensus       179 ~~~v~~l~~h------p~qq~~v~cgt~dg--~~~l~d~rn~~~p~S~l-~ahk~~i---~eV~FHpk----~p~~Lft~  242 (319)
T KOG4714|consen  179 LDAVTALCSH------PAQQHLVCCGTDDG--IVGLWDARNVAMPVSLL-KAHKAEI---WEVHFHPK----NPEHLFTC  242 (319)
T ss_pred             cccchhhhCC------cccccEEEEecCCC--eEEEEEcccccchHHHH-HHhhhhh---hheeccCC----CchheeEe
Confidence            3458888877      24456677788999  88999988775555455 4888774   33 69997    89999999


Q ss_pred             cCCCcEEEEEcccCc----c----------cccceee-------cccccCEEEEEEecCCCEEEEEeCCCcEEEee
Q psy3599         163 SEDSCVYFLDIQSKE----H----------KNAVNKL-------QGHACPVLGVSFNYDESLLATSDYQGLIILWS  217 (223)
Q Consensus       163 s~dg~v~iwd~~~~~----~----------~~~~~~~-------~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd  217 (223)
                      ++||++..||..+..    +          +.+++..       ..-...|+++  .-.|..|++|+.-+.|++++
T Consensus       243 sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sinsf--DV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  243 SEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSF--DVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             cCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeee--eccCceEEeccccceEEEec
Confidence            999999999987410    0          0111110       0001112222  22578899999888888875

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.02  E-value=0.00037  Score=58.31  Aligned_cols=117  Identities=15%  Similarity=0.194  Sum_probs=74.3

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCC-CeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEE-
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAAN-AVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVV-  160 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~-  160 (223)
                      ...+....|+       |||+.|+..+.+ +...+.++++.++.... .  ......   ... .|+|     +++.|+ 
T Consensus       198 ~~~~~~p~wS-------pDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l--~~~~g~---~~~~~~Sp-----DG~~la~  259 (430)
T PRK00178        198 REPILSPRWS-------PDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-I--TNFEGL---NGAPAWSP-----DGSKLAF  259 (430)
T ss_pred             CCceeeeeEC-------CCCCEEEEEEcCCCCCEEEEEECCCCCEEE-c--cCCCCC---cCCeEECC-----CCCEEEE
Confidence            6678999999       999988876532 22256778888774332 1  111122   222 6999     677665 


Q ss_pred             EecCCC--cEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeC-CC--cEEEeeCCCCC
Q psy3599         161 TGSEDS--CVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDY-QG--LIILWSREKHE  222 (223)
Q Consensus       161 sgs~dg--~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-d~--~i~iwd~~~~~  222 (223)
                      +.+.+|  .|+++|+.+   ++. ..+..+........|+|++..++..+. ++  .|.++|+.+++
T Consensus       260 ~~~~~g~~~Iy~~d~~~---~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~  322 (430)
T PRK00178        260 VLSKDGNPEIYVMDLAS---RQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR  322 (430)
T ss_pred             EEccCCCceEEEEECCC---CCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            555555  588889887   543 334444445567889999998776653 33  47777776554

>KOG1240|consensus

Probab=98.01  E-value=0.00013  Score=65.70  Aligned_cols=72  Identities=17%  Similarity=0.204  Sum_probs=54.3

Q ss_pred             EEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecc-cccCEEEEEEecC---CCEEEEEe--CCCcEEE
Q psy3599         143 VRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQG-HACPVLGVSFNYD---ESLLATSD--YQGLIIL  215 (223)
Q Consensus       143 i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~~~~---~~~l~s~s--~d~~i~i  215 (223)
                      +++ +.+|     .+.+++.|+..|.+-+||++-   +.++..+.. +..++..+..+|-   ....++++  ..+.|.+
T Consensus      1198 vTSi~idp-----~~~WlviGts~G~l~lWDLRF---~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1198 VTSIVIDP-----WCNWLVIGTSRGQLVLWDLRF---RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred             eeEEEecC-----CceEEEEecCCceEEEEEeec---CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence            444 5666     578999999999999999999   788887753 4467888888874   24455444  5788999


Q ss_pred             eeCCCCC
Q psy3599         216 WSREKHE  222 (223)
Q Consensus       216 wd~~~~~  222 (223)
                      |+..+|.
T Consensus      1270 wn~~~g~ 1276 (1431)
T KOG1240|consen 1270 WNMETGL 1276 (1431)
T ss_pred             eecccCc
Confidence            9998763

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.99  E-value=0.00059  Score=56.71  Aligned_cols=118  Identities=20%  Similarity=0.263  Sum_probs=74.6

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeC-CCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEE-EE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAA-NAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACV-VT  161 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l-~s  161 (223)
                      ...+....|+       ++|++|+.++. ++-..+.+||+.++.....   ..+....  ....|+|     +++.| ++
T Consensus       189 ~~~~~~p~~S-------pdg~~la~~~~~~~~~~i~v~d~~~g~~~~~---~~~~~~~--~~~~~sp-----Dg~~l~~~  251 (417)
T TIGR02800       189 REPILSPAWS-------PDGQKLAYVSFESGKPEIYVQDLATGQREKV---ASFPGMN--GAPAFSP-----DGSKLAVS  251 (417)
T ss_pred             CCceecccCC-------CCCCEEEEEEcCCCCcEEEEEECCCCCEEEe---ecCCCCc--cceEECC-----CCCEEEEE
Confidence            5568889999       99999887653 2222678899887743321   1333332  2237999     67655 45


Q ss_pred             ecCCC--cEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeC-CC--cEEEeeCCCCC
Q psy3599         162 GSEDS--CVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDY-QG--LIILWSREKHE  222 (223)
Q Consensus       162 gs~dg--~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-d~--~i~iwd~~~~~  222 (223)
                      .+.++  .|++||+.+   +. ...+..+........|+|++..|+.++. ++  .|.++|+.+++
T Consensus       252 ~~~~~~~~i~~~d~~~---~~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~  313 (417)
T TIGR02800       252 LSKDGNPDIYVMDLDG---KQ-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE  313 (417)
T ss_pred             ECCCCCccEEEEECCC---CC-EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            55554  588889887   43 2333334444556789999998877654 23  57777876543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1064|consensus

Probab=97.97  E-value=6.1e-05  Score=70.24  Aligned_cols=121  Identities=12%  Similarity=0.102  Sum_probs=77.4

Q ss_pred             cCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEE
Q psy3599          82 SQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVT  161 (223)
Q Consensus        82 ~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~s  161 (223)
                      |.-..|.++.-+       |...+.++|+.|+  .+++|....+..+......|. ..+  .++.|+.     .|+.+..
T Consensus      2206 ~~v~~v~r~~sH-------p~~~~Yltgs~dg--sv~~~~w~~~~~v~~~rt~g~-s~v--tr~~f~~-----qGnk~~i 2268 (2439)
T KOG1064|consen 2206 HPVENVRRMTSH-------PSDPYYLTGSQDG--SVRMFEWGHGQQVVCFRTAGN-SRV--TRSRFNH-----QGNKFGI 2268 (2439)
T ss_pred             cccCceeeecCC-------CCCceEEecCCCc--eEEEEeccCCCeEEEeeccCc-chh--hhhhhcc-----cCCceee
Confidence            334555666555       6667778888888  788888777766654322222 322  2334554     3444444


Q ss_pred             ecCCCc------------------------------------------EEEEEcccCcccccceeecccccCEEEEEEec
Q psy3599         162 GSEDSC------------------------------------------VYFLDIQSKEHKNAVNKLQGHACPVLGVSFNY  199 (223)
Q Consensus       162 gs~dg~------------------------------------------v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~  199 (223)
                      +..||.                                          +.+||....+...++.  ..|.+.++++++.|
T Consensus      2269 ~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2269 VDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP 2346 (2439)
T ss_pred             eccCCceeecccCCcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC
Confidence            444444                                          4455543311112223  67889999999999


Q ss_pred             CCCEEEEEeCCCcEEEeeCCCC
Q psy3599         200 DESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       200 ~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      ..+.|++||.+|.|++||++..
T Consensus      2347 ~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred             cceEEEecCCcCcEEEeehHHH
Confidence            9999999999999999999753

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.91  E-value=0.00071  Score=56.60  Aligned_cols=121  Identities=13%  Similarity=0.086  Sum_probs=66.6

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeC-CC--eEEEEEecCCCc--eEEeeeeeccccCcceeEEE-eeecCcccCCCcEE
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAA-NA--VCILKVLDKEGA--VQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACV  159 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~-~~--~~~v~i~d~~~~--~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l  159 (223)
                      ......|+       |||+.|+..++ .+  -..+..|+...+  ....... .+....   ... .|+|     +|..|
T Consensus       232 ~~~~p~wS-------PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-~~~~~~---~~~p~wSP-----DG~~L  295 (428)
T PRK01029        232 NQLMPTFS-------PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-NEAFGT---QGNPSFSP-----DGTRL  295 (428)
T ss_pred             CccceEEC-------CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee-cCCCCC---cCCeEECC-----CCCEE
Confidence            34457888       99988886553 11  113344665532  1111111 121111   222 6999     78866


Q ss_pred             EEec-CCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCC---CcEEEeeCCCCC
Q psy3599         160 VTGS-EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQ---GLIILWSREKHE  222 (223)
Q Consensus       160 ~sgs-~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d---~~i~iwd~~~~~  222 (223)
                      +..+ .+|...+|.+.....+.....+..+...+....|+|+|..|+..+.+   ..|.+||+.+++
T Consensus       296 af~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~  362 (428)
T PRK01029        296 VFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR  362 (428)
T ss_pred             EEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            6554 46655555432200012233343344556788999999988876543   468999987764

>KOG4497|consensus

Probab=97.91  E-value=0.00019  Score=56.18  Aligned_cols=102  Identities=16%  Similarity=0.236  Sum_probs=68.6

Q ss_pred             CCeeEEEEeecccccCCCCeEEEEEe-CCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCC-cEEEEe
Q psy3599          85 CPITCLSWRSWISREARDPTLLVNIA-ANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREG-ACVVTG  162 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~-~~l~sg  162 (223)
                      ..|..+.|.       .|..+++++. .+.  .+.+|++...+--- ..  ...... ...+.|+|     +| ..+.+.
T Consensus        49 dki~yieW~-------ads~~ilC~~yk~~--~vqvwsl~Qpew~c-kI--deg~ag-ls~~~WSP-----dgrhiL~ts  110 (447)
T KOG4497|consen   49 DKIVYIEWK-------ADSCHILCVAYKDP--KVQVWSLVQPEWYC-KI--DEGQAG-LSSISWSP-----DGRHILLTS  110 (447)
T ss_pred             HHhhheeee-------ccceeeeeeeeccc--eEEEEEeecceeEE-Ee--ccCCCc-ceeeeECC-----CcceEeeee
Confidence            578889999       8888877655 676  78899987543222 21  222222 03348999     67 556666


Q ss_pred             cCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEe
Q psy3599         163 SEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSD  208 (223)
Q Consensus       163 s~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s  208 (223)
                      .-|-.|.+|.+.+   ... ..++-.+..+..++|+|+|++.+.++
T Consensus       111 eF~lriTVWSL~t---~~~-~~~~~pK~~~kg~~f~~dg~f~ai~s  152 (447)
T KOG4497|consen  111 EFDLRITVWSLNT---QKG-YLLPHPKTNVKGYAFHPDGQFCAILS  152 (447)
T ss_pred             cceeEEEEEEecc---cee-EEecccccCceeEEECCCCceeeeee
Confidence            6788999999998   443 23333344568899999999887776

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.88  E-value=0.0012  Score=55.56  Aligned_cols=114  Identities=17%  Similarity=0.215  Sum_probs=65.0

Q ss_pred             eeEEEEeecccccCCCCeEEEE-EeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecC-
Q psy3599          87 ITCLSWRSWISREARDPTLLVN-IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE-  164 (223)
Q Consensus        87 i~~l~~~~~~~~~~~~~~~l~~-~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~-  164 (223)
                      .....|+       |||+.|+. .+.++-..+.++|..++.... .  ..+....  ....|+|     ++..|+..+. 
T Consensus       264 ~~~~~wS-------PDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-l--t~~~~~~--~~p~wSp-----DG~~I~f~s~~  326 (448)
T PRK04792        264 NGAPRFS-------PDGKKLALVLSKDGQPEIYVVDIATKALTR-I--TRHRAID--TEPSWHP-----DGKSLIFTSER  326 (448)
T ss_pred             cCCeeEC-------CCCCEEEEEEeCCCCeEEEEEECCCCCeEE-C--ccCCCCc--cceEECC-----CCCEEEEEECC
Confidence            3467888       89987764 444442246667877664322 2  1332221  2237999     6776655443 


Q ss_pred             CC--cEEEEEcccCcccccce-eecccccCEEEEEEecCCCEEEEEeC-CCc--EEEeeCCCCC
Q psy3599         165 DS--CVYFLDIQSKEHKNAVN-KLQGHACPVLGVSFNYDESLLATSDY-QGL--IILWSREKHE  222 (223)
Q Consensus       165 dg--~v~iwd~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~s~-d~~--i~iwd~~~~~  222 (223)
                      ++  .|+++|+.+   ++... .+.+  .......|+|+|..++..+. ++.  |.++|+.+++
T Consensus       327 ~g~~~Iy~~dl~~---g~~~~Lt~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~  385 (448)
T PRK04792        327 GGKPQIYRVNLAS---GKVSRLTFEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA  385 (448)
T ss_pred             CCCceEEEEECCC---CCEEEEecCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence            44  466667766   44322 1222  22345789999998877654 343  4556776654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.85  E-value=0.0017  Score=49.86  Aligned_cols=32  Identities=28%  Similarity=0.455  Sum_probs=29.2

Q ss_pred             ccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         189 ACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       189 ~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      .+.|..|..+|||.+||+...+|.|.+|++..
T Consensus       229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs  260 (282)
T PF15492_consen  229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS  260 (282)
T ss_pred             CCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence            45789999999999999999999999999865

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.84  E-value=0.0015  Score=54.67  Aligned_cols=115  Identities=14%  Similarity=0.097  Sum_probs=66.5

Q ss_pred             eeEEEEeecccccCCCCeEEEEEeC-CCeEEEEEecCCC-ceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEec
Q psy3599          87 ITCLSWRSWISREARDPTLLVNIAA-NAVCILKVLDKEG-AVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGS  163 (223)
Q Consensus        87 i~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~v~i~d~~~-~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs  163 (223)
                      .....|+       |||..|+..++ ++-..+.+++... +.... .+ ..+...   ... .|+|     +++.|+..+
T Consensus       283 ~~~p~wS-------PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~-~l-t~~~~~---~~~p~wSP-----DG~~Laf~~  345 (428)
T PRK01029        283 QGNPSFS-------PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR-LL-TKKYRN---SSCPAWSP-----DGKKIAFCS  345 (428)
T ss_pred             cCCeEEC-------CCCCEEEEEECCCCCceEEEEECcccccceE-Ee-ccCCCC---ccceeECC-----CCCEEEEEE
Confidence            3567888       99998886653 3411233334332 11122 11 122222   233 6999     788777554


Q ss_pred             CC---CcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeC---CCcEEEeeCCCCC
Q psy3599         164 ED---SCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDY---QGLIILWSREKHE  222 (223)
Q Consensus       164 ~d---g~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~---d~~i~iwd~~~~~  222 (223)
                      .+   ..|++||+.+   ++.. .+......+....|+|+|..|+..+.   ...|.++|+..++
T Consensus       346 ~~~g~~~I~v~dl~~---g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~  406 (428)
T PRK01029        346 VIKGVRQICVYDLAT---GRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK  406 (428)
T ss_pred             cCCCCcEEEEEECCC---CCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            43   3689999988   5543 23222345677899999998765432   3568888887654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.83  E-value=0.0011  Score=54.29  Aligned_cols=138  Identities=14%  Similarity=0.163  Sum_probs=82.4

Q ss_pred             cCCcEEEEEECCCCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeecccc
Q psy3599          58 STGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHK  137 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~  137 (223)
                      ..+.|..+... +.+.+.  .+... ...-..+.|+       +|++++.+++.++  .+.++|+.+++.+.... .|. 
T Consensus        14 ~~~~v~viD~~-t~~~~~--~i~~~-~~~h~~~~~s-------~Dgr~~yv~~rdg--~vsviD~~~~~~v~~i~-~G~-   78 (369)
T PF02239_consen   14 GSGSVAVIDGA-TNKVVA--RIPTG-GAPHAGLKFS-------PDGRYLYVANRDG--TVSVIDLATGKVVATIK-VGG-   78 (369)
T ss_dssp             GGTEEEEEETT-T-SEEE--EEE-S-TTEEEEEE-T-------T-SSEEEEEETTS--EEEEEETTSSSEEEEEE--SS-
T ss_pred             CCCEEEEEECC-CCeEEE--EEcCC-CCceeEEEec-------CCCCEEEEEcCCC--eEEEEECCcccEEEEEe-cCC-
Confidence            45666644322 334433  23222 2223447788       9999988888888  89999999988766532 232 


Q ss_pred             CcceeEEEeeecCcccCCCcEEEEec-CCCcEEEEEcccCcccccceeeccc-------ccCEEEEEEecCCCEEEEEeC
Q psy3599         138 SSKYQVRSTFCPIMSFREGACVVTGS-EDSCVYFLDIQSKEHKNAVNKLQGH-------ACPVLGVSFNYDESLLATSDY  209 (223)
Q Consensus       138 ~~~~~i~~~~s~~~~~~~~~~l~sgs-~dg~v~iwd~~~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~l~s~s~  209 (223)
                       ..  ...++++     +|+++++++ .++.+.++|.++   .++++.+...       ...+.++..+|....++..-.
T Consensus        79 -~~--~~i~~s~-----DG~~~~v~n~~~~~v~v~D~~t---le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk  147 (369)
T PF02239_consen   79 -NP--RGIAVSP-----DGKYVYVANYEPGTVSVIDAET---LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK  147 (369)
T ss_dssp             -EE--EEEEE-------TTTEEEEEEEETTEEEEEETTT-----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred             -Cc--ceEEEcC-----CCCEEEEEecCCCceeEecccc---ccceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence             21  3347888     788888766 578999999999   8888876532       346778888888775555544


Q ss_pred             -CCcEEEeeCCCC
Q psy3599         210 -QGLIILWSREKH  221 (223)
Q Consensus       210 -d~~i~iwd~~~~  221 (223)
                       .+.|.+-|....
T Consensus       148 d~~~I~vVdy~d~  160 (369)
T PF02239_consen  148 DTGEIWVVDYSDP  160 (369)
T ss_dssp             TTTEEEEEETTTS
T ss_pred             cCCeEEEEEeccc
Confidence             477777776654

...

>KOG2695|consensus

Probab=97.75  E-value=0.00012  Score=57.58  Aligned_cols=99  Identities=12%  Similarity=0.120  Sum_probs=66.9

Q ss_pred             CCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceE---EeeeeeccccCcceeEEEeeecCcccCCCcEE
Q psy3599          83 QDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQ---LKRKFNVNHKSSKYQVRSTFCPIMSFREGACV  159 (223)
Q Consensus        83 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~---~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l  159 (223)
                      ++..|+++...      ..++.+|.+.+.++  .|++||..--++   +..+  -||.+....+-....+     ....+
T Consensus       297 h~Ssvtslq~L------q~s~q~LmaS~M~g--kikLyD~R~~K~~~~V~qY--eGHvN~~a~l~~~v~~-----eeg~I  361 (425)
T KOG2695|consen  297 HDSSVTSLQIL------QFSQQKLMASDMTG--KIKLYDLRATKCKKSVMQY--EGHVNLSAYLPAHVKE-----EEGSI  361 (425)
T ss_pred             cCcchhhhhhh------ccccceEeeccCcC--ceeEeeehhhhcccceeee--eccccccccccccccc-----ccceE
Confidence            38889988876      12677777777777  789999764444   5443  4886654112222333     67788


Q ss_pred             EEecCCCcEEEEEcccCcccccceeecccc----cCEEEEEEec
Q psy3599         160 VTGSEDSCVYFLDIQSKEHKNAVNKLQGHA----CPVLGVSFNY  199 (223)
Q Consensus       160 ~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~----~~v~~v~~~~  199 (223)
                      ++++.|...+||.++.   +.++.+++-..    ..+.+++|..
T Consensus       362 ~s~GdDcytRiWsl~~---ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  362 FSVGDDCYTRIWSLDS---GHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             EEccCeeEEEEEeccc---CceeeccCCCCccccccccceehhc
Confidence            8999999999999999   88888775432    2455666643

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.74  E-value=0.0011  Score=55.77  Aligned_cols=118  Identities=20%  Similarity=0.233  Sum_probs=73.2

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEe-CCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEE-E
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIA-ANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVV-T  161 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~-s  161 (223)
                      ...+.+..|+       |||+.|+..+ .++-..+.++|+.++......   ......  ....|+|     +++.|+ +
T Consensus       217 ~~~~~~p~wS-------PDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt---~~~g~~--~~~~wSP-----DG~~La~~  279 (448)
T PRK04792        217 PEPLMSPAWS-------PDGRKLAYVSFENRKAEIFVQDIYTQVREKVT---SFPGIN--GAPRFSP-----DGKKLALV  279 (448)
T ss_pred             CCcccCceEC-------CCCCEEEEEEecCCCcEEEEEECCCCCeEEec---CCCCCc--CCeeECC-----CCCEEEEE
Confidence            5678899999       9999888655 333225677788776432211   111111  1126999     677665 5


Q ss_pred             ecCCCc--EEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeC-CC--cEEEeeCCCCC
Q psy3599         162 GSEDSC--VYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDY-QG--LIILWSREKHE  222 (223)
Q Consensus       162 gs~dg~--v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-d~--~i~iwd~~~~~  222 (223)
                      .+.+|.  |+++|+.+   ++. ..+..+........|+|++..++..+. ++  .|.++|+.+++
T Consensus       280 ~~~~g~~~Iy~~dl~t---g~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~  341 (448)
T PRK04792        280 LSKDGQPEIYVVDIAT---KAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK  341 (448)
T ss_pred             EeCCCCeEEEEEECCC---CCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            566665  77778877   543 344444445677899999998776653 33  46666776553

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.68  E-value=0.0042  Score=51.17  Aligned_cols=123  Identities=15%  Similarity=0.174  Sum_probs=86.8

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      .++..+...|....+.       .++.-++.+..++- .+-++|..+++....   .+.-+.   +.. ..++     +|
T Consensus       353 ~iqv~~~~~VrY~r~~-------~~~e~~vigt~dgD-~l~iyd~~~~e~kr~---e~~lg~---I~av~vs~-----dG  413 (668)
T COG4946         353 SIQVGKKGGVRYRRIQ-------VDPEGDVIGTNDGD-KLGIYDKDGGEVKRI---EKDLGN---IEAVKVSP-----DG  413 (668)
T ss_pred             eEEcCCCCceEEEEEc-------cCCcceEEeccCCc-eEEEEecCCceEEEe---eCCccc---eEEEEEcC-----CC
Confidence            3344446678887777       66666666664443 577899988864432   233444   444 6788     79


Q ss_pred             cEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCC----cEEEeeCCCCC
Q psy3599         157 ACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG----LIILWSREKHE  222 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~----~i~iwd~~~~~  222 (223)
                      +.++.+.....+.+.|+.+   +.....=+...+.|+...|+|++..+|-+--+|    .|+++|...++
T Consensus       414 K~~vvaNdr~el~vididn---gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K  480 (668)
T COG4946         414 KKVVVANDRFELWVIDIDN---GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK  480 (668)
T ss_pred             cEEEEEcCceEEEEEEecC---CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence            9999998888999999999   654443344567899999999999999886554    48899887654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.65  E-value=0.002  Score=59.64  Aligned_cols=120  Identities=15%  Similarity=0.154  Sum_probs=77.4

Q ss_pred             CeeEEEEeecccccCCCCe-EEEEEeCCCeEEEEEecCCCceEEeee----------eecccc-C------cceeEEEee
Q psy3599          86 PITCLSWRSWISREARDPT-LLVNIAANAVCILKVLDKEGAVQLKRK----------FNVNHK-S------SKYQVRSTF  147 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~-~l~~~~~~~~~~v~i~d~~~~~~~~~~----------~~~~h~-~------~~~~i~~~~  147 (223)
                      ....|+++       +++. ++++-+.+.  .|++||..++......          +..+.. +      ...+...++
T Consensus       741 ~P~GIavs-------pdG~~LYVADs~n~--~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvav  811 (1057)
T PLN02919        741 QPSGISLS-------PDLKELYIADSESS--SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLC  811 (1057)
T ss_pred             CccEEEEe-------CCCCEEEEEECCCC--eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeE
Confidence            34568888       7876 555555666  7899998765422100          000000 0      000122356


Q ss_pred             ecCcccCCCcEEEEecCCCcEEEEEcccCcccccceee-------------cccccCEEEEEEecCCCEEEEEeCCCcEE
Q psy3599         148 CPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKL-------------QGHACPVLGVSFNYDESLLATSDYQGLII  214 (223)
Q Consensus       148 s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-------------~~h~~~v~~v~~~~~~~~l~s~s~d~~i~  214 (223)
                      ++     ++.++++-+.++.|++||..+   +......             .+.-.....++++++|+++++-+.++.|+
T Consensus       812 d~-----dG~LYVADs~N~rIrviD~~t---g~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir  883 (1057)
T PLN02919        812 AK-----DGQIYVADSYNHKIKKLDPAT---KRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR  883 (1057)
T ss_pred             eC-----CCcEEEEECCCCEEEEEECCC---CeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence            66     688999999999999999887   4432211             11122467899999999988888999999


Q ss_pred             EeeCCCCC
Q psy3599         215 LWSREKHE  222 (223)
Q Consensus       215 iwd~~~~~  222 (223)
                      +||+.+++
T Consensus       884 vid~~~~~  891 (1057)
T PLN02919        884 YLDLNKGE  891 (1057)
T ss_pred             EEECCCCc
Confidence            99998764

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.57  E-value=0.0048  Score=56.35  Aligned_cols=115  Identities=17%  Similarity=0.321  Sum_probs=72.4

Q ss_pred             eeEEEEeecccccCCCCeEEEEEeC---CC-eEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEE
Q psy3599          87 ITCLSWRSWISREARDPTLLVNIAA---NA-VCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVT  161 (223)
Q Consensus        87 i~~l~~~~~~~~~~~~~~~l~~~~~---~~-~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~s  161 (223)
                      -..|+|-       .||.++|+.+-   .+ .|.+|+|+-+ |. +...   ...... .-.+ +|.|     .|++|++
T Consensus       212 ~~~ISWR-------GDG~yFAVss~~~~~~~~R~iRVy~Re-G~-L~st---SE~v~g-Le~~l~WrP-----sG~lIA~  273 (928)
T PF04762_consen  212 RVRISWR-------GDGEYFAVSSVEPETGSRRVIRVYSRE-GE-LQST---SEPVDG-LEGALSWRP-----SGNLIAS  273 (928)
T ss_pred             ceEEEEC-------CCCcEEEEEEEEcCCCceeEEEEECCC-ce-EEec---cccCCC-ccCCccCCC-----CCCEEEE
Confidence            3468898       99999998773   44 6799999976 43 3221   111111 0122 6999     6998887


Q ss_pred             ecC---CCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         162 GSE---DSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       162 gs~---dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      ...   ...|-+|.-..-..++....+......|..+.|++++..||..-.|. |.+|-..+
T Consensus       274 ~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~N  334 (928)
T PF04762_consen  274 SQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSN  334 (928)
T ss_pred             EEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeC
Confidence            664   23455555332111232222223456799999999999999977554 99997654

>KOG1354|consensus

Probab=97.55  E-value=0.00026  Score=55.71  Aligned_cols=117  Identities=15%  Similarity=0.194  Sum_probs=78.9

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCc---eEEeeeeeccccCc--ceeEEE-eeecCcccCCCc
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGA---VQLKRKFNVNHKSS--KYQVRS-TFCPIMSFREGA  157 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~---~~~~~~~~~~h~~~--~~~i~~-~~s~~~~~~~~~  157 (223)
                      ...|.+|.+.       .|...+.++.+ -  .|.+|+++-.   -.+...  ..+...  ...|++ .|+|.    .-+
T Consensus       164 tyhiNSIS~N-------sD~Et~lSADd-L--RINLWnlei~d~sFnIVDI--KP~nmEeLteVITsaEFhp~----~cn  227 (433)
T KOG1354|consen  164 TYHINSISVN-------SDKETFLSADD-L--RINLWNLEIIDQSFNIVDI--KPANMEELTEVITSAEFHPH----HCN  227 (433)
T ss_pred             eeEeeeeeec-------CccceEeeccc-e--eeeeccccccCCceeEEEc--cccCHHHHHHHHhhhccCHh----Hcc
Confidence            7789999999       89998888754 4  5788887622   122222  122211  112666 79996    578


Q ss_pred             EEEEecCCCcEEEEEcccCcccccc--ee-------------ecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         158 CVVTGSEDSCVYFLDIQSKEHKNAV--NK-------------LQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       158 ~l~sgs~dg~v~iwd~~~~~~~~~~--~~-------------~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      +++-.+..|+|++.|++..  .-|.  .+             +.+--..|.++.|+++|+++++-+. -+|++||+.
T Consensus       228 ~f~YSSSKGtIrLcDmR~~--aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n  301 (433)
T KOG1354|consen  228 VFVYSSSKGTIRLCDMRQS--ALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN  301 (433)
T ss_pred             EEEEecCCCcEEEeechhh--hhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc
Confidence            8888899999999999851  1110  01             1111235899999999999998863 579999984

>KOG4532|consensus

Probab=97.53  E-value=0.0015  Score=49.97  Aligned_cols=102  Identities=12%  Similarity=0.054  Sum_probs=68.3

Q ss_pred             EEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCccccccee-
Q psy3599         106 LVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNK-  184 (223)
Q Consensus       106 l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-  184 (223)
                      +..++.|.  .+++.+++.+. ...   .-|......-.+.+++     ++.++++-+....|..|.+...  ++.+.. 
T Consensus       131 ~~i~sndh--t~k~~~~~~~s-~~~---~~h~~~~~~ns~~~sn-----d~~~~~~Vgds~~Vf~y~id~~--sey~~~~  197 (344)
T KOG4532|consen  131 LNIASNDH--TGKTMVVSGDS-NKF---AVHNQNLTQNSLHYSN-----DPSWGSSVGDSRRVFRYAIDDE--SEYIENI  197 (344)
T ss_pred             eeeccCCc--ceeEEEEecCc-ccc---eeeccccceeeeEEcC-----CCceEEEecCCCcceEEEeCCc--cceeeee
Confidence            34445555  55555554331 111   2343332224447888     8999999999999999988762  333322 


Q ss_pred             -ecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         185 -LQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       185 -~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                       ...-++.-.+.+|+.....+|++..||++.|||+|.
T Consensus       198 ~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~  234 (344)
T KOG4532|consen  198 YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRN  234 (344)
T ss_pred             EecccCCCceeeeeccCcceEEEEecCCcEEEEEecc
Confidence             223445567889999999999999999999999986

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.52  E-value=0.019  Score=45.69  Aligned_cols=145  Identities=15%  Similarity=0.179  Sum_probs=92.3

Q ss_pred             ccCCcEEEEEECC-CCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeC-CCeEEEEEecCCC-ceEEeeeee
Q psy3599          57 RSTGVIVSILCDD-LGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAA-NAVCILKVLDKEG-AVQLKRKFN  133 (223)
Q Consensus        57 ~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~v~i~d~~~-~~~~~~~~~  133 (223)
                      +..|.|.+..+|+ +|++-........ +.+-+.++.+       +++++|+++.- .+  .|.++-+.. |......-.
T Consensus        61 ~~~ggvaay~iD~~~G~Lt~ln~~~~~-g~~p~yvsvd-------~~g~~vf~AnY~~g--~v~v~p~~~dG~l~~~v~~  130 (346)
T COG2706          61 GEEGGVAAYRIDPDDGRLTFLNRQTLP-GSPPCYVSVD-------EDGRFVFVANYHSG--SVSVYPLQADGSLQPVVQV  130 (346)
T ss_pred             CCcCcEEEEEEcCCCCeEEEeeccccC-CCCCeEEEEC-------CCCCEEEEEEccCc--eEEEEEcccCCccccceee
Confidence            4578999999998 5988766544444 5566899999       99999998873 34  566655533 211111000


Q ss_pred             ccccCc-------ceeEEE-eeecCcccCCCcEEEEecCC-CcEEEEEcccCcccccc----eeecccccCEEEEEEecC
Q psy3599         134 VNHKSS-------KYQVRS-TFCPIMSFREGACVVTGSED-SCVYFLDIQSKEHKNAV----NKLQGHACPVLGVSFNYD  200 (223)
Q Consensus       134 ~~h~~~-------~~~i~~-~~s~~~~~~~~~~l~sgs~d-g~v~iwd~~~~~~~~~~----~~~~~h~~~v~~v~~~~~  200 (223)
                      ..|.+.       ..-+.. .+.|     +++++++.... -.|.+|++..   +.+.    ..++ ....-..|.|+|+
T Consensus       131 ~~h~g~~p~~rQ~~~h~H~a~~tP-----~~~~l~v~DLG~Dri~~y~~~d---g~L~~~~~~~v~-~G~GPRHi~FHpn  201 (346)
T COG2706         131 VKHTGSGPHERQESPHVHSANFTP-----DGRYLVVPDLGTDRIFLYDLDD---GKLTPADPAEVK-PGAGPRHIVFHPN  201 (346)
T ss_pred             eecCCCCCCccccCCccceeeeCC-----CCCEEEEeecCCceEEEEEccc---CccccccccccC-CCCCcceEEEcCC
Confidence            122222       000334 5788     78888876542 3689999886   4322    1223 2334688999999


Q ss_pred             CCEEEEEe-CCCcEEEeeCCC
Q psy3599         201 ESLLATSD-YQGLIILWSREK  220 (223)
Q Consensus       201 ~~~l~s~s-~d~~i~iwd~~~  220 (223)
                      +.+.-..+ -+++|-+|....
T Consensus       202 ~k~aY~v~EL~stV~v~~y~~  222 (346)
T COG2706         202 GKYAYLVNELNSTVDVLEYNP  222 (346)
T ss_pred             CcEEEEEeccCCEEEEEEEcC
Confidence            99765555 588999998765

>KOG3621|consensus

Probab=97.52  E-value=0.00097  Score=57.06  Aligned_cols=109  Identities=13%  Similarity=0.150  Sum_probs=76.6

Q ss_pred             CCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccc
Q psy3599         101 RDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKN  180 (223)
Q Consensus       101 ~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~  180 (223)
                      ..+.+++.|++-+  .+.+|+-..+........ +.....  +.+..++     +..+++.|+..|.|.++.+.....+.
T Consensus        43 st~~~l~~GsS~G--~lyl~~R~~~~~~~~~~~-~~~~~~--~~~~vs~-----~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   43 ATEEYLAMGSSAG--SVYLYNRHTGEMRKLKNE-GATGIT--CVRSVSS-----VEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             cCCceEEEecccc--eEEEEecCchhhhccccc-CccceE--EEEEecc-----hhHhhhhhcCCceEEeehhhccCCCc
Confidence            6688999998888  788888777655443221 211111  3336677     68899999999999999887622122


Q ss_pred             ccee--e-cccccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         181 AVNK--L-QGHACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       181 ~~~~--~-~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      .++.  . +.|+..|+++.|++++..+.+|...|+|.+-.+.
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~  154 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD  154 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence            2221  1 2377899999999999999999999998765543

>KOG1354|consensus

Probab=97.52  E-value=0.0016  Score=51.40  Aligned_cols=124  Identities=15%  Similarity=0.198  Sum_probs=81.1

Q ss_pred             CCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCce----EEeeeeeccccCcce---------eEE-Eeee
Q psy3599          83 QDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAV----QLKRKFNVNHKSSKY---------QVR-STFC  148 (223)
Q Consensus        83 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~----~~~~~~~~~h~~~~~---------~i~-~~~s  148 (223)
                      ...-|.++.|.       ..|.+|++|..++  .+-++.-....    .....| +.|....-         .+. ..|.
T Consensus        24 eadiis~vef~-------~~Ge~LatGdkgG--RVv~f~r~~~~~~ey~~~t~f-qshepEFDYLkSleieEKinkIrw~   93 (433)
T KOG1354|consen   24 EADIISAVEFD-------HYGERLATGDKGG--RVVLFEREKLYKGEYNFQTEF-QSHEPEFDYLKSLEIEEKINKIRWL   93 (433)
T ss_pred             hhcceeeEEee-------cccceEeecCCCC--eEEEeecccccccceeeeeee-eccCcccchhhhhhhhhhhhhceec
Confidence            36789999999       9999999999888  66666533221    122333 35543210         011 2455


Q ss_pred             cCcccCCCcEEEEecCCCcEEEEEcccCcccc--------------------------------ccee-ecccccCEEEE
Q psy3599         149 PIMSFREGACVVTGSEDSCVYFLDIQSKEHKN--------------------------------AVNK-LQGHACPVLGV  195 (223)
Q Consensus       149 ~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~--------------------------------~~~~-~~~h~~~v~~v  195 (223)
                      +..   +...++....|.+|++|.+..+....                                |... -.+|.--|+++
T Consensus        94 ~~~---n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSI  170 (433)
T KOG1354|consen   94 DDG---NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSI  170 (433)
T ss_pred             CCC---CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeee
Confidence            532   45677777889999999986521000                                0000 13677789999


Q ss_pred             EEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         196 SFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       196 ~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      +++.|+..++++. |=.|.+|+++-
T Consensus       171 S~NsD~Et~lSAD-dLRINLWnlei  194 (433)
T KOG1354|consen  171 SVNSDKETFLSAD-DLRINLWNLEI  194 (433)
T ss_pred             eecCccceEeecc-ceeeeeccccc
Confidence            9999999999986 77899998753

>KOG2066|consensus

Probab=97.51  E-value=0.0011  Score=57.58  Aligned_cols=108  Identities=12%  Similarity=0.227  Sum_probs=71.0

Q ss_pred             CCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCccc
Q psy3599         101 RDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHK  179 (223)
Q Consensus       101 ~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~  179 (223)
                      .+|.++++||+|+  .+-|..+-+...... +  .-.. +  +.+ +++|.........+++|+.-| +.++.-+--++.
T Consensus        81 ~~Gey~asCS~DG--kv~I~sl~~~~~~~~-~--df~r-p--iksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk  151 (846)
T KOG2066|consen   81 LEGEYVASCSDDG--KVVIGSLFTDDEITQ-Y--DFKR-P--IKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK  151 (846)
T ss_pred             cCCceEEEecCCC--cEEEeeccCCcccee-E--ecCC-c--ceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc
Confidence            6899999999999  565544443322211 1  1111 1  555 788854444678899999999 777765431112


Q ss_pred             ccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         180 NAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       180 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      ..+ .+..-.++|.++.|  .|+++|=++.+| |++||+.+.
T Consensus       152 ~~v-~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~  189 (846)
T KOG2066|consen  152 DSV-VLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTR  189 (846)
T ss_pred             cce-eeecCccceEEEEe--cCcEEEEecCCC-cEEEecccc
Confidence            222 34445679999999  688999998666 999998764

>KOG2315|consensus

Probab=97.49  E-value=0.002  Score=53.76  Aligned_cols=100  Identities=10%  Similarity=0.134  Sum_probs=68.8

Q ss_pred             ccCCcEEEEEECCCCceeeee-----------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeE-EEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK-----------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVC-ILK  118 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~-----------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~v~  118 (223)
                      ...|.|..+.|+++|+-....                 .+..- .++=.++-|+       |.|.+|+.++-+.++ .+.
T Consensus       268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~-egpRN~~~fn-------p~g~ii~lAGFGNL~G~mE  339 (566)
T KOG2315|consen  268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP-EGPRNTAFFN-------PHGNIILLAGFGNLPGDME  339 (566)
T ss_pred             CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC-CCCccceEEC-------CCCCEEEEeecCCCCCceE
Confidence            457899999999987644221                 22222 4566678999       899998887743311 589


Q ss_pred             EecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecC------CCcEEEEEccc
Q psy3599         119 VLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE------DSCVYFLDIQS  175 (223)
Q Consensus       119 i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~------dg~v~iwd~~~  175 (223)
                      +||..+.+.+...   .-.+.   ..+.|+|     +|.+++|++.      |..++||++..
T Consensus       340 vwDv~n~K~i~~~---~a~~t---t~~eW~P-----dGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  340 VWDVPNRKLIAKF---KAANT---TVFEWSP-----DGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             EEeccchhhcccc---ccCCc---eEEEEcC-----CCcEEEEEeccccEEecCCeEEEEecC
Confidence            9999886555431   22222   5568999     8999998876      56788999875

>KOG4640|consensus

Probab=97.48  E-value=0.00052  Score=58.00  Aligned_cols=70  Identities=20%  Similarity=0.174  Sum_probs=58.0

Q ss_pred             EEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEE-EEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         144 RSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVL-GVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       144 ~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ...|+|     ..+++|.+..+|.+-+..+..    +.+.++.-|...++ +++|.|||..||.|=.||+|++-|+.++.
T Consensus        25 ~~ewnP-----~~dLiA~~t~~gelli~R~n~----qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   25 RIEWNP-----KMDLIATRTEKGELLIHRLNW----QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             EEEEcC-----ccchhheeccCCcEEEEEecc----ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            337999     689999999999888877765    34666665556566 99999999999999999999999998864

>KOG0309|consensus

Probab=97.48  E-value=0.00043  Score=59.63  Aligned_cols=121  Identities=16%  Similarity=0.248  Sum_probs=83.4

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCC--CceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKE--GAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS  163 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~--~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs  163 (223)
                      .|-...|+++    +.-...+++.+...   --+|++.  +...+.-.+ .||...+  ....|.|.    ....+++++
T Consensus        69 ~vad~qws~h----~a~~~wiVsts~qk---aiiwnlA~ss~~aIef~l-hghsrai--td~n~~~q----~pdVlatcs  134 (1081)
T KOG0309|consen   69 QVADVQWSPH----PAKPYWIVSTSNQK---AIIWNLAKSSSNAIEFVL-HGHSRAI--TDINFNPQ----HPDVLATCS  134 (1081)
T ss_pred             hhcceecccC----CCCceeEEecCcch---hhhhhhhcCCccceEEEE-ecCccce--eccccCCC----CCcceeecc
Confidence            5667888832    33445566665433   2356653  333444344 4888874  33479887    789999999


Q ss_pred             CCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         164 EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       164 ~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .|..+..||+++.  ..+++.+..-......|.|+-....+...+..+.|++||++.|.
T Consensus       135 vdt~vh~wd~rSp--~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs  191 (1081)
T KOG0309|consen  135 VDTYVHAWDMRSP--HRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS  191 (1081)
T ss_pred             ccccceeeeccCC--CcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCC
Confidence            9999999999982  46777777666677889999754444444567889999998763

>KOG1645|consensus

Probab=97.48  E-value=0.00049  Score=55.20  Aligned_cols=72  Identities=14%  Similarity=0.332  Sum_probs=60.1

Q ss_pred             EEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCC-CEEEEEeCCCcEEEeeCCC
Q psy3599         143 VRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDE-SLLATSDYQGLIILWSREK  220 (223)
Q Consensus       143 i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~d~~i~iwd~~~  220 (223)
                      |+. +|+|.    +..++..++.+..|+|.|+++   ...+..+.++ ..+++.+|.-+. +++..|-..|.|.+||+|.
T Consensus       196 IrdlafSp~----~~GLl~~asl~nkiki~dlet---~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  196 IRDLAFSPF----NEGLLGLASLGNKIKIMDLET---SCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             hhhhccCcc----ccceeeeeccCceEEEEeccc---ceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence            666 89995    455889999999999999999   7788888887 679999998874 5666677899999999997


Q ss_pred             CC
Q psy3599         221 HE  222 (223)
Q Consensus       221 ~~  222 (223)
                      .+
T Consensus       268 ~~  269 (463)
T KOG1645|consen  268 PE  269 (463)
T ss_pred             CC
Confidence            65

>KOG1275|consensus

Probab=97.38  E-value=0.0017  Score=57.22  Aligned_cols=101  Identities=18%  Similarity=0.262  Sum_probs=74.1

Q ss_pred             CCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecC---------CCcEEEE
Q psy3599         101 RDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE---------DSCVYFL  171 (223)
Q Consensus       101 ~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~---------dg~v~iw  171 (223)
                      .+++++.+|...+  .|.+.|+++.+.+.+ + ..|++.   +. .|.-     .|++|++++.         |..|++|
T Consensus       185 ~Nnr~lf~G~t~G--~V~LrD~~s~~~iht-~-~aHs~s---iS-DfDv-----~GNlLitCG~S~R~~~l~~D~FvkVY  251 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRG--TVFLRDPNSFETIHT-F-DAHSGS---IS-DFDV-----QGNLLITCGYSMRRYNLAMDPFVKVY  251 (1118)
T ss_pred             ecCcEEEeecccc--eEEeecCCcCceeee-e-eccccc---ee-eeec-----cCCeEEEeecccccccccccchhhhh
Confidence            4578888999888  899999998876664 4 488877   32 3555     5888888774         5578899


Q ss_pred             EcccCcccccceee----------------------------------------------cccccCEEEEEEecCCCEEE
Q psy3599         172 DIQSKEHKNAVNKL----------------------------------------------QGHACPVLGVSFNYDESLLA  205 (223)
Q Consensus       172 d~~~~~~~~~~~~~----------------------------------------------~~h~~~v~~v~~~~~~~~l~  205 (223)
                      |+++   ...+.-+                                              ......+.+++++++++.++
T Consensus       252 DLRm---mral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~ala  328 (1118)
T KOG1275|consen  252 DLRM---MRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALA  328 (1118)
T ss_pred             hhhh---hhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEE
Confidence            9876   2211110                                              11123488899999999999


Q ss_pred             EEeCCCcEEEee
Q psy3599         206 TSDYQGLIILWS  217 (223)
Q Consensus       206 s~s~d~~i~iwd  217 (223)
                      .|..+|.|.+|-
T Consensus       329 fgd~~g~v~~wa  340 (1118)
T KOG1275|consen  329 FGDHEGHVNLWA  340 (1118)
T ss_pred             EecccCcEeeec
Confidence            999999999996

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.38  E-value=0.004  Score=52.46  Aligned_cols=78  Identities=18%  Similarity=0.222  Sum_probs=58.8

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCc
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGA  157 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~  157 (223)
                      .........+.+.+++       |+.+.|+.|+.|+  .+.+||...+.....    ...-.+  ...+|+|     +|.
T Consensus       253 vtsipL~s~v~~ca~s-------p~E~kLvlGC~Dg--SiiLyD~~~~~t~~~----ka~~~P--~~iaWHp-----~ga  312 (545)
T PF11768_consen  253 VTSIPLPSQVICCARS-------PSEDKLVLGCEDG--SIILYDTTRGVTLLA----KAEFIP--TLIAWHP-----DGA  312 (545)
T ss_pred             EEEEecCCcceEEecC-------cccceEEEEecCC--eEEEEEcCCCeeeee----eecccc--eEEEEcC-----CCc
Confidence            3344446788899999       8888899888888  899999876643321    222222  4448999     799


Q ss_pred             EEEEecCCCcEEEEEccc
Q psy3599         158 CVVTGSEDSCVYFLDIQS  175 (223)
Q Consensus       158 ~l~sgs~dg~v~iwd~~~  175 (223)
                      +++.|+..|.+.+||+.-
T Consensus       313 i~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  313 IFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEEEEcCCceEEEEEeec
Confidence            999999999999999864

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.36  E-value=0.056  Score=43.95  Aligned_cols=126  Identities=9%  Similarity=0.125  Sum_probs=71.7

Q ss_pred             eeecCCCCeeEEEEeecccccCCCCeEEEEEe-CCCeEEEEEecCC--CceE-Eeeeee---ccccCcceeEEEeeecCc
Q psy3599          79 LVLSQDCPITCLSWRSWISREARDPTLLVNIA-ANAVCILKVLDKE--GAVQ-LKRKFN---VNHKSSKYQVRSTFCPIM  151 (223)
Q Consensus        79 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~v~i~d~~--~~~~-~~~~~~---~~h~~~~~~i~~~~s~~~  151 (223)
                      +....+.....+.|+       +++.++.... .+.  .+.+++..  .+.. ......   .+.......-...++|  
T Consensus       186 ~~~~~G~GPRh~~f~-------pdg~~~Yv~~e~s~--~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp--  254 (345)
T PF10282_consen  186 IKVPPGSGPRHLAFS-------PDGKYAYVVNELSN--TVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP--  254 (345)
T ss_dssp             EECSTTSSEEEEEE--------TTSSEEEEEETTTT--EEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T--
T ss_pred             cccccCCCCcEEEEc-------CCcCEEEEecCCCC--cEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec--
Confidence            344446677889999       8887766544 555  55565555  3321 111111   1111111113336888  


Q ss_pred             ccCCCcEEEEec-CCCcEEEEEcccC-cccccceeecccccCEEEEEEecCCCEEEEEe-CCCcEEEeeC
Q psy3599         152 SFREGACVVTGS-EDSCVYFLDIQSK-EHKNAVNKLQGHACPVLGVSFNYDESLLATSD-YQGLIILWSR  218 (223)
Q Consensus       152 ~~~~~~~l~sgs-~dg~v~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s-~d~~i~iwd~  218 (223)
                         ++++|+.+. ....|.+|++... +..+.+..+.........+.++|+|++|++++ .++.|.+|++
T Consensus       255 ---dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  255 ---DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             ---TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             ---CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence               787776655 4568999999431 11233333433334478999999999988887 5678999876

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.36  E-value=0.0039  Score=51.63  Aligned_cols=112  Identities=17%  Similarity=0.270  Sum_probs=77.8

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEe--CCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIA--ANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVT  161 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~--~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~s  161 (223)
                      .++|.+++|.       |.+..+++.+  ...  .+.++|+...  +...++   ....  -+..|+|     .+.+++.
T Consensus       274 ~~pVhdf~W~-------p~S~~F~vi~g~~pa--~~s~~~lr~N--l~~~~P---e~~r--NT~~fsp-----~~r~il~  332 (561)
T COG5354         274 KDPVHDFTWE-------PLSSRFAVISGYMPA--SVSVFDLRGN--LRFYFP---EQKR--NTIFFSP-----HERYILF  332 (561)
T ss_pred             cccceeeeec-------ccCCceeEEeccccc--ceeecccccc--eEEecC---Cccc--ccccccC-----cccEEEE
Confidence            6799999999       7777777655  444  7888888766  333333   2222  2235899     6888888


Q ss_pred             ecCC---CcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEe------CCCcEEEeeCCC
Q psy3599         162 GSED---SCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSD------YQGLIILWSREK  220 (223)
Q Consensus       162 gs~d---g~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s------~d~~i~iwd~~~  220 (223)
                      ++-|   |.+-+||....  ..++..+.+..  ..-+.|+|++.++.+.-      .|..++|||+..
T Consensus       333 agF~nl~gni~i~~~~~r--f~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g  396 (561)
T COG5354         333 AGFDNLQGNIEIFDPAGR--FKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG  396 (561)
T ss_pred             ecCCccccceEEeccCCc--eEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence            6655   68999998762  34455677644  34468999999877664      578899999864

>KOG1275|consensus

Probab=97.34  E-value=0.0012  Score=58.25  Aligned_cols=62  Identities=13%  Similarity=0.262  Sum_probs=54.6

Q ss_pred             CCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEe---------CCCcEEEeeCCCC
Q psy3599         155 EGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSD---------YQGLIILWSREKH  221 (223)
Q Consensus       155 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s---------~d~~i~iwd~~~~  221 (223)
                      ++.++.+|...|.|.+-|.++   .+.++++.+|.+.|.++..  .|+.|+++|         .|..|++||+|.-
T Consensus       186 Nnr~lf~G~t~G~V~LrD~~s---~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm  256 (1118)
T KOG1275|consen  186 NNRNLFCGDTRGTVFLRDPNS---FETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM  256 (1118)
T ss_pred             cCcEEEeecccceEEeecCCc---Cceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhh
Confidence            578999999999999999999   8999999999999976654  799999998         5677899999863

>KOG1645|consensus

Probab=97.29  E-value=0.00099  Score=53.51  Aligned_cols=74  Identities=15%  Similarity=0.136  Sum_probs=58.4

Q ss_pred             CCCeeEEEEeecccccCCCCe-EEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEe
Q psy3599          84 DCPITCLSWRSWISREARDPT-LLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTG  162 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~-~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sg  162 (223)
                      +..|.+++|+       |... ++..++.+.  .+++.|+.+..++..+  ..+...   ..|+|.-.    +.++|++|
T Consensus       193 g~~IrdlafS-------p~~~GLl~~asl~n--kiki~dlet~~~vssy--~a~~~~---wSC~wDld----e~h~IYaG  254 (463)
T KOG1645|consen  193 GSFIRDLAFS-------PFNEGLLGLASLGN--KIKIMDLETSCVVSSY--IAYNQI---WSCCWDLD----ERHVIYAG  254 (463)
T ss_pred             chhhhhhccC-------ccccceeeeeccCc--eEEEEecccceeeehe--eccCCc---eeeeeccC----CcceeEEe
Confidence            6788999999       5544 777888888  8999999988766654  355333   55688875    67899999


Q ss_pred             cCCCcEEEEEccc
Q psy3599         163 SEDSCVYFLDIQS  175 (223)
Q Consensus       163 s~dg~v~iwd~~~  175 (223)
                      ...|.|++||++.
T Consensus       255 l~nG~VlvyD~R~  267 (463)
T KOG1645|consen  255 LQNGMVLVYDMRQ  267 (463)
T ss_pred             ccCceEEEEEccC
Confidence            9999999999997

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.19  E-value=0.089  Score=42.76  Aligned_cols=144  Identities=15%  Similarity=0.199  Sum_probs=88.4

Q ss_pred             cCCcEEEEEECCC-CceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEe-CCCeEEEEEecCCCceEEeeee-ec
Q psy3599          58 STGVIVSILCDDL-GRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIA-ANAVCILKVLDKEGAVQLKRKF-NV  134 (223)
Q Consensus        58 ~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~v~i~d~~~~~~~~~~~-~~  134 (223)
                      ..+.|.++.++++ |.+......... +.....++++       +++.+|+++. .++  .+.++++.....+.... ..
T Consensus        60 ~~g~v~~~~i~~~~g~L~~~~~~~~~-g~~p~~i~~~-------~~g~~l~vany~~g--~v~v~~l~~~g~l~~~~~~~  129 (345)
T PF10282_consen   60 DSGGVSSYRIDPDTGTLTLLNSVPSG-GSSPCHIAVD-------PDGRFLYVANYGGG--SVSVFPLDDDGSLGEVVQTV  129 (345)
T ss_dssp             TTTEEEEEEEETTTTEEEEEEEEEES-SSCEEEEEEC-------TTSSEEEEEETTTT--EEEEEEECTTSEEEEEEEEE
T ss_pred             CCCCEEEEEECCCcceeEEeeeeccC-CCCcEEEEEe-------cCCCEEEEEEccCC--eEEEEEccCCcccceeeeec
Confidence            5688999999986 887766555443 6677789999       8999888776 466  66777766421222110 01


Q ss_pred             cc----------cCcceeEEE-eeecCcccCCCcEEEEecC-CCcEEEEEcccCccccc--ceeec-ccccCEEEEEEec
Q psy3599         135 NH----------KSSKYQVRS-TFCPIMSFREGACVVTGSE-DSCVYFLDIQSKEHKNA--VNKLQ-GHACPVLGVSFNY  199 (223)
Q Consensus       135 ~h----------~~~~~~i~~-~~s~~~~~~~~~~l~sgs~-dg~v~iwd~~~~~~~~~--~~~~~-~h~~~v~~v~~~~  199 (223)
                      .|          ....  .++ .++|     ++++++.... ...|++|++.... +++  ...+. .....-..+.|+|
T Consensus       130 ~~~g~g~~~~rq~~~h--~H~v~~~p-----dg~~v~v~dlG~D~v~~~~~~~~~-~~l~~~~~~~~~~G~GPRh~~f~p  201 (345)
T PF10282_consen  130 RHEGSGPNPDRQEGPH--PHQVVFSP-----DGRFVYVPDLGADRVYVYDIDDDT-GKLTPVDSIKVPPGSGPRHLAFSP  201 (345)
T ss_dssp             ESEEEESSTTTTSSTC--EEEEEE-T-----TSSEEEEEETTTTEEEEEEE-TTS--TEEEEEEEECSTTSSEEEEEE-T
T ss_pred             ccCCCCCccccccccc--ceeEEECC-----CCCEEEEEecCCCEEEEEEEeCCC-ceEEEeeccccccCCCCcEEEEcC
Confidence            11          1122  455 7899     6777666443 3479999987611 112  12222 2234568999999


Q ss_pred             CCCEEEEE-eCCCcEEEeeCC
Q psy3599         200 DESLLATS-DYQGLIILWSRE  219 (223)
Q Consensus       200 ~~~~l~s~-s~d~~i~iwd~~  219 (223)
                      ++.++... -.++.|.++++.
T Consensus       202 dg~~~Yv~~e~s~~v~v~~~~  222 (345)
T PF10282_consen  202 DGKYAYVVNELSNTVSVFDYD  222 (345)
T ss_dssp             TSSEEEEEETTTTEEEEEEEE
T ss_pred             CcCEEEEecCCCCcEEEEeec
Confidence            98876554 467889998876

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2041|consensus

Probab=97.18  E-value=0.004  Score=53.84  Aligned_cols=110  Identities=16%  Similarity=0.326  Sum_probs=76.9

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCc--------------eEEeeeeeccccCcceeEEE-eee
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGA--------------VQLKRKFNVNHKSSKYQVRS-TFC  148 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~--------------~~~~~~~~~~h~~~~~~i~~-~~s  148 (223)
                      .....++.|.       ....++++|+.++  .+++.-+.+.              ..+...+. ||...   +.. .|+
T Consensus        14 nvkL~c~~WN-------ke~gyIAcgG~dG--lLKVlKl~t~t~d~~~~glaa~snLsmNQtLe-GH~~s---V~vvTWN   80 (1189)
T KOG2041|consen   14 NVKLHCAEWN-------KESGYIACGGADG--LLKVLKLGTDTTDLNKSGLAAASNLSMNQTLE-GHNAS---VMVVTWN   80 (1189)
T ss_pred             CceEEEEEEc-------ccCCeEEeccccc--eeEEEEccccCCcccccccccccccchhhhhc-cCcce---EEEEEec
Confidence            5678899999       8899999999888  4444432211              11223443 78877   444 788


Q ss_pred             cCcccCCCcEEEEecCCCcEEEEEcccCcccccceee--cccccCEEEEEEecCCCEEEEEeCCCcEE
Q psy3599         149 PIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKL--QGHACPVLGVSFNYDESLLATSDYQGLII  214 (223)
Q Consensus       149 ~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~l~s~s~d~~i~  214 (223)
                      .     ....|-+...+|.|-+|-+-.   +......  ...++.|.+++|+-+|..+...-.||.|.
T Consensus        81 e-----~~QKLTtSDt~GlIiVWmlyk---gsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavI  140 (1189)
T KOG2041|consen   81 E-----NNQKLTTSDTSGLIIVWMLYK---GSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVI  140 (1189)
T ss_pred             c-----ccccccccCCCceEEEEeeec---ccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEE
Confidence            7     577888889999999999887   5443322  33567789999999998876666666553

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.17  E-value=0.021  Score=47.29  Aligned_cols=104  Identities=11%  Similarity=0.109  Sum_probs=77.3

Q ss_pred             CCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCC-cEEEEEcccCcc
Q psy3599         101 RDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDS-CVYFLDIQSKEH  178 (223)
Q Consensus       101 ~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg-~v~iwd~~~~~~  178 (223)
                      .+|++++..|.+.   ..+.+...+..+.    .+|...   ++- .+..     +++-++.|..|| .+-++|.++   
T Consensus       330 ~~Gd~ia~VSRGk---aFi~~~~~~~~iq----v~~~~~---VrY~r~~~-----~~e~~vigt~dgD~l~iyd~~~---  391 (668)
T COG4946         330 VNGDYIALVSRGK---AFIMRPWDGYSIQ----VGKKGG---VRYRRIQV-----DPEGDVIGTNDGDKLGIYDKDG---  391 (668)
T ss_pred             CCCcEEEEEecCc---EEEECCCCCeeEE----cCCCCc---eEEEEEcc-----CCcceEEeccCCceEEEEecCC---
Confidence            6789999888777   3344444454443    477666   554 4544     566888899999 899999998   


Q ss_pred             cccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCCC
Q psy3599         179 KNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHEP  223 (223)
Q Consensus       179 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~  223 (223)
                      ++ ++.+...-+.|.++..+|+|.+++.+.....+.+.|+.++.+
T Consensus       392 ~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         392 GE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             ce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence            65 344554567799999999999999998888888889988763

>KOG4190|consensus

Probab=97.16  E-value=0.00063  Score=56.89  Aligned_cols=79  Identities=20%  Similarity=0.291  Sum_probs=59.4

Q ss_pred             ccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcc----cccceeecccccCEEEEEEecCCCEEEEEeC
Q psy3599         134 VNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEH----KNAVNKLQGHACPVLGVSFNYDESLLATSDY  209 (223)
Q Consensus       134 ~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~----~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~  209 (223)
                      .||+..   ++....-.    +.+-+++++.|.+|++|.++..+.    ..|..++++|+.+|.++.|-.+-..++++  
T Consensus       732 ~GH~~~---iRai~Aid----NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--  802 (1034)
T KOG4190|consen  732 TGHQEK---IRAIAAID----NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--  802 (1034)
T ss_pred             cCcHHH---hHHHHhcc----cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--
Confidence            477777   44422221    578899999999999999876221    23677889999999999998887777665  


Q ss_pred             CCcEEEeeCCCC
Q psy3599         210 QGLIILWSREKH  221 (223)
Q Consensus       210 d~~i~iwd~~~~  221 (223)
                      ||-|.+||.--+
T Consensus       803 D~giHlWDPFig  814 (1034)
T KOG4190|consen  803 DGGIHLWDPFIG  814 (1034)
T ss_pred             cCcceeeccccc
Confidence            888999997544

>KOG2314|consensus

Probab=97.12  E-value=0.0069  Score=50.82  Aligned_cols=109  Identities=17%  Similarity=0.173  Sum_probs=76.9

Q ss_pred             eeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecC--
Q psy3599          87 ITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE--  164 (223)
Q Consensus        87 i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~--  164 (223)
                      =+.+.||       |.|.+|++-...+   |-+|--++-..+..   ..|.+.   -...|||     ..++|+|=+.  
T Consensus       213 etyv~wS-------P~GTYL~t~Hk~G---I~lWGG~~f~r~~R---F~Hp~V---q~idfSP-----~EkYLVT~s~~p  271 (698)
T KOG2314|consen  213 ETYVRWS-------PKGTYLVTFHKQG---IALWGGESFDRIQR---FYHPGV---QFIDFSP-----NEKYLVTYSPEP  271 (698)
T ss_pred             eeeEEec-------CCceEEEEEeccc---eeeecCccHHHHHh---ccCCCc---eeeecCC-----ccceEEEecCCc
Confidence            4579999       9999999998887   56777655444443   355544   3337999     6889988553  


Q ss_pred             ---------CCcEEEEEcccCcccccceeeccccc--CE-EEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         165 ---------DSCVYFLDIQSKEHKNAVNKLQGHAC--PV-LGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       165 ---------dg~v~iwd~~~~~~~~~~~~~~~h~~--~v-~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                               ...++|||+.+   |.....+..-++  .+ .-..||.|+.++|--.. .+|.||+..+
T Consensus       272 ~~~~~~d~e~~~l~IWDI~t---G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtps  335 (698)
T KOG2314|consen  272 IIVEEDDNEGQQLIIWDIAT---GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPS  335 (698)
T ss_pred             cccCcccCCCceEEEEEccc---cchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCc
Confidence                     24689999999   887777765222  22 24688999999887765 5688887654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.10  E-value=0.001  Score=51.86  Aligned_cols=122  Identities=11%  Similarity=0.185  Sum_probs=79.0

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCc---eEEeeeeeccccCcc--eeEEE-eeecCcccCCCc
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGA---VQLKRKFNVNHKSSK--YQVRS-TFCPIMSFREGA  157 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~---~~~~~~~~~~h~~~~--~~i~~-~~s~~~~~~~~~  157 (223)
                      ...|.++.|.       .|...++++.+ -  .+.+|+++-.   -.+...  ..|....  ..+++ .|+|.    ..+
T Consensus       172 ~yhiNSiS~N-------sD~et~lSaDd-L--rINLWnl~i~D~sFnIVDi--KP~nmeeLteVItSaeFhp~----~cn  235 (460)
T COG5170         172 PYHINSISFN-------SDKETLLSADD-L--RINLWNLEIIDGSFNIVDI--KPHNMEELTEVITSAEFHPE----MCN  235 (460)
T ss_pred             eeEeeeeeec-------Cchheeeeccc-e--eeeeccccccCCceEEEec--cCccHHHHHHHHhhcccCHh----Hcc
Confidence            6778899998       88888887644 4  5788887522   122222  2333221  12555 68885    466


Q ss_pred             EEEEecCCCcEEEEEcccCc---ccccc----------eeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         158 CVVTGSEDSCVYFLDIQSKE---HKNAV----------NKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       158 ~l~sgs~dg~v~iwd~~~~~---~~~~~----------~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ++.-.+..|.|++-|++...   +...+          .-+.+-...|..+.|+++|.++++-+ =-+|+|||++..+
T Consensus       236 ~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k  312 (460)
T COG5170         236 VFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAK  312 (460)
T ss_pred             eEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEeccccc
Confidence            77777888999999998510   00001          01122335689999999999998886 4589999997643

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.91  E-value=0.069  Score=47.77  Aligned_cols=141  Identities=13%  Similarity=0.220  Sum_probs=80.1

Q ss_pred             CcEEEEEECCCCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCc--eEEeeeeecccc
Q psy3599          60 GVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGA--VQLKRKFNVNHK  137 (223)
Q Consensus        60 ~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~--~~~~~~~~~~h~  137 (223)
                      +.++.+... .|+++.  .|..+...+|..+.-..-...+.+. ..++.-+.+.   +..||+.-.  ..+........+
T Consensus       504 ~~ly~mDLe-~GKVV~--eW~~~~~~~v~~~~p~~K~aqlt~e-~tflGls~n~---lfriDpR~~~~k~v~~~~k~Y~~  576 (794)
T PF08553_consen  504 NKLYKMDLE-RGKVVE--EWKVHDDIPVVDIAPDSKFAQLTNE-QTFLGLSDNS---LFRIDPRLSGNKLVDSQSKQYSS  576 (794)
T ss_pred             CceEEEecC-CCcEEE--EeecCCCcceeEecccccccccCCC-ceEEEECCCc---eEEeccCCCCCceeecccccccc
Confidence            444433322 466655  6777755566666533100111122 3344445555   445576532  223221111111


Q ss_pred             CcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEee
Q psy3599         138 SSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWS  217 (223)
Q Consensus       138 ~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd  217 (223)
                      ...  ..|.-+.     ...+|+.|+.+|.|++||-..   ...-..+.+-..+|..|..+.||..++..+ +..+.|++
T Consensus       577 ~~~--Fs~~aTt-----~~G~iavgs~~G~IRLyd~~g---~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~  645 (794)
T PF08553_consen  577 KNN--FSCFATT-----EDGYIAVGSNKGDIRLYDRLG---KRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLID  645 (794)
T ss_pred             CCC--ceEEEec-----CCceEEEEeCCCcEEeecccc---hhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence            222  3331121     477899999999999999554   445556677788999999999999776665 56777777


Q ss_pred             C
Q psy3599         218 R  218 (223)
Q Consensus       218 ~  218 (223)
                      .
T Consensus       646 t  646 (794)
T PF08553_consen  646 T  646 (794)
T ss_pred             E
Confidence            5

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.91  E-value=0.17  Score=41.19  Aligned_cols=68  Identities=9%  Similarity=0.172  Sum_probs=51.4

Q ss_pred             eeecCcccCCCcEEEEec----------CCCcEEEEEcccCcccccceeecccccCEEEEEEecCCC-EEEEEe-CCCcE
Q psy3599         146 TFCPIMSFREGACVVTGS----------EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDES-LLATSD-YQGLI  213 (223)
Q Consensus       146 ~~s~~~~~~~~~~l~sgs----------~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s-~d~~i  213 (223)
                      +++|     ++..++...          ..+.|.++|..+   ++.+..+.. ...+..++++||+. .|.+.+ .++.|
T Consensus       254 a~~~-----dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t---~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~V  324 (352)
T TIGR02658       254 AYHR-----ARDRIYLLADQRAKWTHKTASRFLFVVDAKT---GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTL  324 (352)
T ss_pred             EEcC-----CCCEEEEEecCCccccccCCCCEEEEEECCC---CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcE
Confidence            5777     566665532          124799999999   888887764 34689999999988 777666 67889


Q ss_pred             EEeeCCCCC
Q psy3599         214 ILWSREKHE  222 (223)
Q Consensus       214 ~iwd~~~~~  222 (223)
                      .+.|..+++
T Consensus       325 sViD~~t~k  333 (352)
T TIGR02658       325 YIFDAETGK  333 (352)
T ss_pred             EEEECcCCe
Confidence            999998765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG3617|consensus

Probab=96.88  E-value=0.0025  Score=56.06  Aligned_cols=107  Identities=17%  Similarity=0.314  Sum_probs=74.8

Q ss_pred             EEEEeecccccCCCCeEEEEEe----CCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEec
Q psy3599          89 CLSWRSWISREARDPTLLVNIA----ANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGS  163 (223)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~~~----~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs  163 (223)
                      -+.|+       |...+|++++    .++  .+.||- ++|+.      ..|-..+.-+.+ +|+|     ..-+|+.|-
T Consensus        20 i~SWH-------PsePlfAVA~fS~er~G--SVtIfa-dtGEP------qr~Vt~P~hatSLCWHp-----e~~vLa~gw   78 (1416)
T KOG3617|consen   20 ISSWH-------PSEPLFAVASFSPERGG--SVTIFA-DTGEP------QRDVTYPVHATSLCWHP-----EEFVLAQGW   78 (1416)
T ss_pred             ccccC-------CCCceeEEEEecCCCCc--eEEEEe-cCCCC------CcccccceehhhhccCh-----HHHHHhhcc
Confidence            35677       6666776655    344  555653 33431      122222211334 7999     577888888


Q ss_pred             CCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         164 EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       164 ~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      .-|.+.+|...+   .+.-.....|+-+|.-+.|+++|..++|+..-|.+.+|.+.
T Consensus        79 e~g~~~v~~~~~---~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   79 EMGVSDVQKTNT---TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccceeEEEecCC---ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            889999999888   55544455689999999999999999999999999999754

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=96.87  E-value=0.054  Score=50.58  Aligned_cols=116  Identities=14%  Similarity=0.136  Sum_probs=72.3

Q ss_pred             eEEEEeecccccCC-CCeEEEEEeCCCeEEEEEecCCCceEEeeeeec-------cccCc----ceeEEEeeecCcccCC
Q psy3599          88 TCLSWRSWISREAR-DPTLLVNIAANAVCILKVLDKEGAVQLKRKFNV-------NHKSS----KYQVRSTFCPIMSFRE  155 (223)
Q Consensus        88 ~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~-------~h~~~----~~~i~~~~s~~~~~~~  155 (223)
                      ..++++       + ++.++++.+.+.  .+++||..++.... .-..       ++...    ..+...+++|     +
T Consensus       686 ~gVa~d-------p~~g~LyVad~~~~--~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-----d  750 (1057)
T PLN02919        686 WDVCFE-------PVNEKVYIAMAGQH--QIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSP-----D  750 (1057)
T ss_pred             eEEEEe-------cCCCeEEEEECCCC--eEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeC-----C
Confidence            568888       6 667777776777  78888887664321 1000       11000    0012236777     5


Q ss_pred             Cc-EEEEecCCCcEEEEEcccCcccccce-------------eeccc--------ccCEEEEEEecCCCEEEEEeCCCcE
Q psy3599         156 GA-CVVTGSEDSCVYFLDIQSKEHKNAVN-------------KLQGH--------ACPVLGVSFNYDESLLATSDYQGLI  213 (223)
Q Consensus       156 ~~-~l~sgs~dg~v~iwd~~~~~~~~~~~-------------~~~~h--------~~~v~~v~~~~~~~~l~s~s~d~~i  213 (223)
                      +. ++++-+.++.|++||+.+   +....             .+-..        -.....++++++|.++++-+.++.|
T Consensus       751 G~~LYVADs~n~~Irv~D~~t---g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rI  827 (1057)
T PLN02919        751 LKELYIADSESSSIRALDLKT---GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKI  827 (1057)
T ss_pred             CCEEEEEECCCCeEEEEECCC---CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEE
Confidence            65 667777789999999876   32110             01000        1123578999999998888899999


Q ss_pred             EEeeCCCC
Q psy3599         214 ILWSREKH  221 (223)
Q Consensus       214 ~iwd~~~~  221 (223)
                      ++||..++
T Consensus       828 rviD~~tg  835 (1057)
T PLN02919        828 KKLDPATK  835 (1057)
T ss_pred             EEEECCCC
Confidence            99998754

>PRK04043 tolB translocation protein TolB; Provisional

Probab=96.87  E-value=0.2  Score=41.99  Aligned_cols=114  Identities=12%  Similarity=0.057  Sum_probs=63.1

Q ss_pred             CeeEEEEeecccccCCCCeEEEE-EeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec-
Q psy3599          86 PITCLSWRSWISREARDPTLLVN-IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS-  163 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~-~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs-  163 (223)
                      ......|+       |||..|+. .+.++-..+.+++..++.... .  ..+....  ....|+|     +|+.|+-.+ 
T Consensus       234 ~~~~~~~S-------PDG~~la~~~~~~g~~~Iy~~dl~~g~~~~-L--T~~~~~d--~~p~~SP-----DG~~I~F~Sd  296 (419)
T PRK04043        234 MLVVSDVS-------KDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-I--TNYPGID--VNGNFVE-----DDKRIVFVSD  296 (419)
T ss_pred             cEEeeEEC-------CCCCEEEEEEccCCCcEEEEEECCCCcEEE-c--ccCCCcc--CccEECC-----CCCEEEEEEC
Confidence            34457788       88876664 433332255666776664222 2  1222211  2226999     676555444 


Q ss_pred             CCC--cEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCC---------CcEEEeeCCCCC
Q psy3599         164 EDS--CVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQ---------GLIILWSREKHE  222 (223)
Q Consensus       164 ~dg--~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d---------~~i~iwd~~~~~  222 (223)
                      ..+  .|++.|+.+   ++....... ..  ....|+|+|..++..+..         ..|.+.|+.+++
T Consensus       297 r~g~~~Iy~~dl~~---g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~  360 (419)
T PRK04043        297 RLGYPNIFMKKLNS---GSVEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY  360 (419)
T ss_pred             CCCCceEEEEECCC---CCeEeCccC-CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence            334  577777776   443222111 11  124899999988776643         257777876654

>KOG4649|consensus

Probab=96.86  E-value=0.04  Score=42.29  Aligned_cols=102  Identities=15%  Similarity=0.189  Sum_probs=71.0

Q ss_pred             CeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCccccc
Q psy3599         103 PTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNA  181 (223)
Q Consensus       103 ~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~  181 (223)
                      ..+++.++-.+  .+.--|..+|.......   -...   +.+ +.-.      +++++.|+..|.+++-+..+   ++.
T Consensus        23 kT~v~igSHs~--~~~avd~~sG~~~We~i---lg~R---iE~sa~vv------gdfVV~GCy~g~lYfl~~~t---Gs~   85 (354)
T KOG4649|consen   23 KTLVVIGSHSG--IVIAVDPQSGNLIWEAI---LGVR---IECSAIVV------GDFVVLGCYSGGLYFLCVKT---GSQ   85 (354)
T ss_pred             ceEEEEecCCc--eEEEecCCCCcEEeehh---hCce---eeeeeEEE------CCEEEEEEccCcEEEEEecc---hhh
Confidence            45666777666  55566888886665422   1122   444 3322      78899999999999999999   877


Q ss_pred             ceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         182 VNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       182 ~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      +..+.....-=......+++..+-.|+.|+..+.-|.++.
T Consensus        86 ~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~  125 (354)
T KOG4649|consen   86 IWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY  125 (354)
T ss_pred             eeeeeehhhhccceEEcCCCceEEEecCCCcEEEeccccc
Confidence            7666543331123445778999999999999999888764

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=96.84  E-value=0.084  Score=48.56  Aligned_cols=119  Identities=14%  Similarity=0.197  Sum_probs=71.5

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCce-EEeeeeeccccCcceeEEEeeecCcccCCCcEEEEe
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAV-QLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTG  162 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~-~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sg  162 (223)
                      ...|..+.|+       .|+..|+....+.   +.+|...+-. -++..+........  ....|+|-    +...|...
T Consensus       304 ~~~v~~l~Wn-------~ds~iLAv~~~~~---vqLWt~~NYHWYLKqei~~~~~~~~--~~~~Wdpe----~p~~L~v~  367 (928)
T PF04762_consen  304 EEKVIELAWN-------SDSEILAVWLEDR---VQLWTRSNYHWYLKQEIRFSSSESV--NFVKWDPE----KPLRLHVL  367 (928)
T ss_pred             CceeeEEEEC-------CCCCEEEEEecCC---ceEEEeeCCEEEEEEEEEccCCCCC--CceEECCC----CCCEEEEE
Confidence            5689999999       9999999877666   6667665442 22222221222221  12357774    45556555


Q ss_pred             cCCCcEEEEEc----ccCc---------------------------cccc--ceeecccccCEEEEEEecCCCEEEEEeC
Q psy3599         163 SEDSCVYFLDI----QSKE---------------------------HKNA--VNKLQGHACPVLGVSFNYDESLLATSDY  209 (223)
Q Consensus       163 s~dg~v~iwd~----~~~~---------------------------~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~s~  209 (223)
                      +.+|.+..+++    ....                           ...+  ...+. -...|.+++|++++..+++-..
T Consensus       368 t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~  446 (928)
T PF04762_consen  368 TSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTS  446 (928)
T ss_pred             ecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEEC
Confidence            55555543332    2100                           0011  12222 3467999999999888888889


Q ss_pred             CCcEEEeeCC
Q psy3599         210 QGLIILWSRE  219 (223)
Q Consensus       210 d~~i~iwd~~  219 (223)
                      ||.+.+|...
T Consensus       447 d~~l~~~~~~  456 (928)
T PF04762_consen  447 DGSLSIYEWD  456 (928)
T ss_pred             CCCEEEEEec
Confidence            9999999854

>PRK04043 tolB translocation protein TolB; Provisional

Probab=96.83  E-value=0.23  Score=41.54  Aligned_cols=116  Identities=10%  Similarity=0.068  Sum_probs=68.2

Q ss_pred             CCeeEEEEeecccccCCCCeE-EEEEeCC-CeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEE-E
Q psy3599          85 CPITCLSWRSWISREARDPTL-LVNIAAN-AVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACV-V  160 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~-l~~~~~~-~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l-~  160 (223)
                      ..+..-.|+       |||+. ++..+.. +...+.++|+.+++...-.   ...+.   ... .|+|     |+..+ +
T Consensus       188 ~~~~~p~wS-------pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---~~~g~---~~~~~~SP-----DG~~la~  249 (419)
T PRK04043        188 GLNIFPKWA-------NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---SSQGM---LVVSDVSK-----DGSKLLL  249 (419)
T ss_pred             CCeEeEEEC-------CCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---cCCCc---EEeeEECC-----CCCEEEE
Confidence            377889999       89874 5544432 2226777888877543211   22222   333 6999     67644 4


Q ss_pred             EecCC--CcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeC-CC--cEEEeeCCCCC
Q psy3599         161 TGSED--SCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDY-QG--LIILWSREKHE  222 (223)
Q Consensus       161 sgs~d--g~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-d~--~i~iwd~~~~~  222 (223)
                      +.+.+  ..|+++|+..   ++. ..+..+........|+|||+.|+..+. .+  .|.+.|+.+++
T Consensus       250 ~~~~~g~~~Iy~~dl~~---g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~  312 (419)
T PRK04043        250 TMAPKGQPDIYLYDTNT---KTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS  312 (419)
T ss_pred             EEccCCCcEEEEEECCC---CcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            44444  4577778776   442 333323322345689999987777663 23  47777776654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.80  E-value=0.043  Score=41.67  Aligned_cols=105  Identities=16%  Similarity=0.115  Sum_probs=63.7

Q ss_pred             CCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCccccc
Q psy3599         102 DPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNA  181 (223)
Q Consensus       102 ~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~  181 (223)
                      ++..+++++.++  .+..+|..+|+.+...-  . ....   ......     .+..++.++.++.++.+|..+   ++.
T Consensus        35 ~~~~v~~~~~~~--~l~~~d~~tG~~~W~~~--~-~~~~---~~~~~~-----~~~~v~v~~~~~~l~~~d~~t---G~~   98 (238)
T PF13360_consen   35 DGGRVYVASGDG--NLYALDAKTGKVLWRFD--L-PGPI---SGAPVV-----DGGRVYVGTSDGSLYALDAKT---GKV   98 (238)
T ss_dssp             ETTEEEEEETTS--EEEEEETTTSEEEEEEE--C-SSCG---GSGEEE-----ETTEEEEEETTSEEEEEETTT---SCE
T ss_pred             eCCEEEEEcCCC--EEEEEECCCCCEEEEee--c-cccc---cceeee-----cccccccccceeeeEecccCC---cce
Confidence            345555556666  67788998887666431  1 2221   110011     356666677888999999988   887


Q ss_pred             ceee-cccc---cCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         182 VNKL-QGHA---CPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       182 ~~~~-~~h~---~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +... ....   ...........+..++.+..++.|..+|+++|+
T Consensus        99 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~  143 (238)
T PF13360_consen   99 LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK  143 (238)
T ss_dssp             EEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE
T ss_pred             eeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCc
Confidence            7763 3221   111222223347778888889999999998875

...

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.79  E-value=0.0066  Score=33.85  Aligned_cols=31  Identities=16%  Similarity=0.221  Sum_probs=28.0

Q ss_pred             ccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         189 ACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       189 ~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      ...|.+++|+|...++|.++.+|.|.++.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3468999999999999999999999999883

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.77  E-value=0.026  Score=47.36  Aligned_cols=56  Identities=20%  Similarity=0.237  Sum_probs=37.8

Q ss_pred             CcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeC
Q psy3599         156 GACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       156 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      |.+|...+.+ .|.+||..+   ++.+..+...  .|..|.|++++.+++..+. ..+.|++.
T Consensus       117 G~LL~~~~~~-~i~~yDw~~---~~~i~~i~v~--~vk~V~Ws~~g~~val~t~-~~i~il~~  172 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWET---GKLIRRIDVS--AVKYVIWSDDGELVALVTK-DSIYILKY  172 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT-----EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred             CcEEEEECCC-CEEEEEhhH---cceeeEEecC--CCcEEEEECCCCEEEEEeC-CeEEEEEe
Confidence            5666665554 899999999   8889988843  3899999999999999874 46777653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=96.63  E-value=0.26  Score=39.42  Aligned_cols=146  Identities=19%  Similarity=0.192  Sum_probs=88.1

Q ss_pred             cCCcEEEEEECC-CCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeC----CCeEEEEEecCCCceE--Eee
Q psy3599          58 STGVIVSILCDD-LGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAA----NAVCILKVLDKEGAVQ--LKR  130 (223)
Q Consensus        58 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~v~i~d~~~~~~--~~~  130 (223)
                      ....|..+.++. .|++.... .... ...++-|.|+       ++.+.|.++-.    +++..+++ |.++|..  +..
T Consensus        14 ~s~gI~v~~ld~~~g~l~~~~-~v~~-~~nptyl~~~-------~~~~~LY~v~~~~~~ggvaay~i-D~~~G~Lt~ln~   83 (346)
T COG2706          14 ESQGIYVFNLDTKTGELSLLQ-LVAE-LGNPTYLAVN-------PDQRHLYVVNEPGEEGGVAAYRI-DPDDGRLTFLNR   83 (346)
T ss_pred             CCCceEEEEEeCcccccchhh-hccc-cCCCceEEEC-------CCCCEEEEEEecCCcCcEEEEEE-cCCCCeEEEeec
Confidence            367788888884 67665432 2223 6788999999       88877776553    23433333 4443431  111


Q ss_pred             eeeccccCcceeEEEeeecCcccCCCcEEEEecC-CCcEEEEEcccCcccccceeecccccC----------EEEEEEec
Q psy3599         131 KFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE-DSCVYFLDIQSKEHKNAVNKLQGHACP----------VLGVSFNY  199 (223)
Q Consensus       131 ~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~-dg~v~iwd~~~~~~~~~~~~~~~h~~~----------v~~v~~~~  199 (223)
                      ....++  ..  ...+.++     ++.+++++.. .|.|.++-++..+..........|.+.          +....+.|
T Consensus        84 ~~~~g~--~p--~yvsvd~-----~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP  154 (346)
T COG2706          84 QTLPGS--PP--CYVSVDE-----DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP  154 (346)
T ss_pred             cccCCC--CC--eEEEECC-----CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC
Confidence            111111  11  4446777     6888887775 478999988652211122122224444          88899999


Q ss_pred             CCCEEEEEeC-CCcEEEeeCCCCC
Q psy3599         200 DESLLATSDY-QGLIILWSREKHE  222 (223)
Q Consensus       200 ~~~~l~s~s~-d~~i~iwd~~~~~  222 (223)
                      ++++|++.+- -..|.+|++..++
T Consensus       155 ~~~~l~v~DLG~Dri~~y~~~dg~  178 (346)
T COG2706         155 DGRYLVVPDLGTDRIFLYDLDDGK  178 (346)
T ss_pred             CCCEEEEeecCCceEEEEEcccCc
Confidence            9999888862 3568999987543

>KOG0882|consensus

Probab=96.59  E-value=0.013  Score=47.98  Aligned_cols=108  Identities=14%  Similarity=0.113  Sum_probs=75.8

Q ss_pred             EEEEEe-CCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEccc---Cccc
Q psy3599         105 LLVNIA-ANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQS---KEHK  179 (223)
Q Consensus       105 ~l~~~~-~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~---~~~~  179 (223)
                      +|+.+. +++  .+.++|.....+....+..-|...   +.+ .+.+     .++.+++....|.|.-|....   .+..
T Consensus       113 ~IAVs~~~sg--~i~VvD~~~d~~q~~~fkklH~sP---V~~i~y~q-----a~Ds~vSiD~~gmVEyWs~e~~~qfPr~  182 (558)
T KOG0882|consen  113 LIAVSLFKSG--KIFVVDGFGDFCQDGYFKKLHFSP---VKKIRYNQ-----AGDSAVSIDISGMVEYWSAEGPFQFPRT  182 (558)
T ss_pred             eEEeecccCC--CcEEECCcCCcCccceecccccCc---eEEEEeec-----cccceeeccccceeEeecCCCcccCccc
Confidence            444433 555  678888765554444554466666   555 7888     589999999999999998772   0001


Q ss_pred             c---------cceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         180 N---------AVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       180 ~---------~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +         -++.+.-.+....++.|+|++..+.+-+.|..|++++.++++
T Consensus       183 ~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk  234 (558)
T KOG0882|consen  183 NLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK  234 (558)
T ss_pred             cccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence            1         122223345567899999999999999999999999998875

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.56  E-value=0.04  Score=45.24  Aligned_cols=101  Identities=18%  Similarity=0.196  Sum_probs=62.0

Q ss_pred             CeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccc
Q psy3599         103 PTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAV  182 (223)
Q Consensus       103 ~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~  182 (223)
                      +..+++++.++  .+..+|..+|+.+...   .-...   +......     ++..++.++.+|.++.+|..+   ++.+
T Consensus        65 ~~~v~v~~~~g--~v~a~d~~tG~~~W~~---~~~~~---~~~~p~v-----~~~~v~v~~~~g~l~ald~~t---G~~~  128 (377)
T TIGR03300        65 GGKVYAADADG--TVVALDAETGKRLWRV---DLDER---LSGGVGA-----DGGLVFVGTEKGEVIALDAED---GKEL  128 (377)
T ss_pred             CCEEEEECCCC--eEEEEEccCCcEeeee---cCCCC---cccceEE-----cCCEEEEEcCCCEEEEEECCC---CcEe
Confidence            44556666666  5666788888766542   11111   2111111     467788888999999999988   7776


Q ss_pred             eeecccccCEEE-EEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         183 NKLQGHACPVLG-VSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       183 ~~~~~h~~~v~~-v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      -..... ..+.+ ...  .+..++.++.++.+..||.++++
T Consensus       129 W~~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~  166 (377)
T TIGR03300       129 WRAKLS-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGE  166 (377)
T ss_pred             eeeccC-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCc
Confidence            555432 22221 111  24566677779999999998765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=96.47  E-value=0.032  Score=46.47  Aligned_cols=110  Identities=21%  Similarity=0.247  Sum_probs=78.8

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS  163 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs  163 (223)
                      .-++...+||       |.|.+|++....+   |.+|+......+..   ..|...   -...|+|     .+++|.+=+
T Consensus        32 ~~p~~~~~~S-------P~G~~l~~~~~~~---V~~~~g~~~~~l~~---~~~~~V---~~~~fSP-----~~kYL~tw~   90 (561)
T COG5354          32 NWPVAYVSES-------PLGTYLFSEHAAG---VECWGGPSKAKLVR---FRHPDV---KYLDFSP-----NEKYLVTWS   90 (561)
T ss_pred             Ccchhheeec-------Ccchheehhhccc---eEEccccchhheee---eecCCc---eecccCc-----ccceeeeec
Confidence            6688999999       9999999877665   77888776654443   234332   3336888     788888755


Q ss_pred             CCC---------------cEEEEEcccCcccccceeecccccC--EE-EEEEecCCCEEEEEeCCCcEEEeeC
Q psy3599         164 EDS---------------CVYFLDIQSKEHKNAVNKLQGHACP--VL-GVSFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       164 ~dg---------------~v~iwd~~~~~~~~~~~~~~~h~~~--v~-~v~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      ..+               .+.+||..+   +.++..+.....+  .+ -+.|+.+..++|=- ....+.|+++
T Consensus        91 ~~pi~~pe~e~sp~~~~n~~~vwd~~s---g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~  159 (561)
T COG5354          91 REPIIEPEIEISPFTSKNNVFVWDIAS---GMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI  159 (561)
T ss_pred             cCCccChhhccCCccccCceeEEeccC---ceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec
Confidence            443               389999999   8998888876655  44 67888887765544 3446888885

>KOG1832|consensus

Probab=96.46  E-value=0.0042  Score=55.02  Aligned_cols=120  Identities=15%  Similarity=0.158  Sum_probs=83.7

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      .+..+ ...-+|++|+       .+.++|+.|+-.+  .+++++..+|.....+  .+|...   ++. .-+.     +|
T Consensus      1096 ~frd~-~~~fTc~afs-------~~~~hL~vG~~~G--eik~~nv~sG~~e~s~--ncH~Sa---vT~vePs~-----dg 1155 (1516)
T KOG1832|consen 1096 SFRDE-TALFTCIAFS-------GGTNHLAVGSHAG--EIKIFNVSSGSMEESV--NCHQSA---VTLVEPSV-----DG 1155 (1516)
T ss_pred             hhhcc-ccceeeEEee-------cCCceEEeeeccc--eEEEEEccCccccccc--cccccc---cccccccC-----Cc
Confidence            34445 6788999999       8889999999888  8999999999766654  588777   332 2333     67


Q ss_pred             cEEEEecCCC--cEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCCC
Q psy3599         157 ACVVTGSEDS--CVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHEP  223 (223)
Q Consensus       157 ~~l~sgs~dg--~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~  223 (223)
                      ..+++.+...  -..+|+....  +...+++.+    -.++.|+..-..-+.|.....+.+||+.++.|
T Consensus      1156 s~~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~ 1218 (1516)
T KOG1832|consen 1156 STQLTSSSSSSPLSALWDASST--GGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSP 1218 (1516)
T ss_pred             ceeeeeccccCchHHHhccccc--cCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcH
Confidence            7666655543  3578998762  556666653    35677876544445555556789999988753

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.46  E-value=0.18  Score=41.02  Aligned_cols=93  Identities=13%  Similarity=0.050  Sum_probs=65.9

Q ss_pred             EEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecC----------CCcEEEEEcccCcccccceee
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE----------DSCVYFLDIQSKEHKNAVNKL  185 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~----------dg~v~iwd~~~~~~~~~~~~~  185 (223)
                      .+.+.|..+.+.+.. +..|....   .  .++|     +++.++.+..          +..|.+||..+   .+.+..+
T Consensus        28 ~v~ViD~~~~~v~g~-i~~G~~P~---~--~~sp-----Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t---~~~~~~i   93 (352)
T TIGR02658        28 QVYTIDGEAGRVLGM-TDGGFLPN---P--VVAS-----DGSFFAHASTVYSRIARGKRTDYVEVIDPQT---HLPIADI   93 (352)
T ss_pred             eEEEEECCCCEEEEE-EEccCCCc---e--eECC-----CCCEEEEEeccccccccCCCCCEEEEEECcc---CcEEeEE
Confidence            678889988876654 33354433   2  2788     6666655554          78899999999   8888777


Q ss_pred             ccccc-------CEEEEEEecCCCEEEEEe-C-CCcEEEeeCCCCC
Q psy3599         186 QGHAC-------PVLGVSFNYDESLLATSD-Y-QGLIILWSREKHE  222 (223)
Q Consensus       186 ~~h~~-------~v~~v~~~~~~~~l~s~s-~-d~~i~iwd~~~~~  222 (223)
                      .....       ....++++|+|..+.... . +..|-+.|+.+++
T Consensus        94 ~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k  139 (352)
T TIGR02658        94 ELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA  139 (352)
T ss_pred             ccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc
Confidence            63222       234688999999888776 3 6889999998765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4649|consensus

Probab=96.44  E-value=0.29  Score=37.80  Aligned_cols=115  Identities=19%  Similarity=0.152  Sum_probs=69.8

Q ss_pred             ccCCcEEEEEECC-CCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeecc
Q psy3599          57 RSTGVIVSILCDD-LGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVN  135 (223)
Q Consensus        57 ~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~  135 (223)
                      .|.+.+.  +.|+ .|++.-...+    +..|.+-+..        -|++++.|+.++  .+.+.+.++|........ -
T Consensus        30 SHs~~~~--avd~~sG~~~We~il----g~RiE~sa~v--------vgdfVV~GCy~g--~lYfl~~~tGs~~w~f~~-~   92 (354)
T KOG4649|consen   30 SHSGIVI--AVDPQSGNLIWEAIL----GVRIECSAIV--------VGDFVVLGCYSG--GLYFLCVKTGSQIWNFVI-L   92 (354)
T ss_pred             cCCceEE--EecCCCCcEEeehhh----CceeeeeeEE--------ECCEEEEEEccC--cEEEEEecchhheeeeee-h
Confidence            3566666  4455 6766543322    3334443332        366788888766  555667888865554321 1


Q ss_pred             ccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEec
Q psy3599         136 HKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNY  199 (223)
Q Consensus       136 h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~  199 (223)
                      ..-.   ++....+     ++.++..|+.|+..+.-|.++   ..++++.+-..+.-.+-+.+|
T Consensus        93 ~~vk---~~a~~d~-----~~glIycgshd~~~yalD~~~---~~cVykskcgG~~f~sP~i~~  145 (354)
T KOG4649|consen   93 ETVK---VRAQCDF-----DGGLIYCGSHDGNFYALDPKT---YGCVYKSKCGGGTFVSPVIAP  145 (354)
T ss_pred             hhhc---cceEEcC-----CCceEEEecCCCcEEEecccc---cceEEecccCCceeccceecC
Confidence            1111   3334455     789999999999999999999   888888774433333444555

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.44  E-value=0.03  Score=45.93  Aligned_cols=97  Identities=15%  Similarity=0.178  Sum_probs=58.4

Q ss_pred             CeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccc
Q psy3599         103 PTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAV  182 (223)
Q Consensus       103 ~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~  182 (223)
                      +..+..++.++  .+..+|..+++.+...-  .....   ..  -+|..   .+..++.++.+|.++++|..+   ++.+
T Consensus       279 ~~~vyv~~~~G--~l~~~d~~tG~~~W~~~--~~~~~---~~--ssp~i---~g~~l~~~~~~G~l~~~d~~t---G~~~  343 (377)
T TIGR03300       279 DNRLYVTDADG--VVVALDRRSGSELWKND--ELKYR---QL--TAPAV---VGGYLVVGDFEGYLHWLSRED---GSFV  343 (377)
T ss_pred             CCEEEEECCCC--eEEEEECCCCcEEEccc--cccCC---cc--ccCEE---ECCEEEEEeCCCEEEEEECCC---CCEE
Confidence            34444445555  56666777775544210  11111   11  11211   467888999999999999999   8888


Q ss_pred             eeecccccCEE-EEEEecCCCEEEEEeCCCcEEEe
Q psy3599         183 NKLQGHACPVL-GVSFNYDESLLATSDYQGLIILW  216 (223)
Q Consensus       183 ~~~~~h~~~v~-~v~~~~~~~~l~s~s~d~~i~iw  216 (223)
                      ..++.+...+. +..+  .++.|..++.||.|..|
T Consensus       344 ~~~~~~~~~~~~sp~~--~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       344 ARLKTDGSGIASPPVV--VGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEEcCCCccccCCEE--ECCEEEEEeCCceEEEe
Confidence            88876554332 2222  23457788889998765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2314|consensus

Probab=96.44  E-value=0.049  Score=45.96  Aligned_cols=106  Identities=11%  Similarity=0.087  Sum_probs=67.7

Q ss_pred             CCeeEEEEeecccccCCCCeEEEEEeCCC---------eEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccC
Q psy3599          85 CPITCLSWRSWISREARDPTLLVNIAANA---------VCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFR  154 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~~~~~~~---------~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~  154 (223)
                      ..|.-+.||       |...+|++-+-..         -+.+.|||+.+|.... .|..-..... ..-. .||.     
T Consensus       250 p~Vq~idfS-------P~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkr-sF~~~~~~~~-~WP~frWS~-----  315 (698)
T KOG2314|consen  250 PGVQFIDFS-------PNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKR-SFPVIKSPYL-KWPIFRWSH-----  315 (698)
T ss_pred             CCceeeecC-------CccceEEEecCCccccCcccCCCceEEEEEccccchhc-ceeccCCCcc-ccceEEecc-----
Confidence            457789999       8889999866211         1378999999996544 4431111111 0222 5777     


Q ss_pred             CCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEe
Q psy3599         155 EGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSD  208 (223)
Q Consensus       155 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s  208 (223)
                      |+++++--.. .+|.|++..+   ..++-.-.-.-..|....|+|.+++||--.
T Consensus       316 DdKy~Arm~~-~sisIyEtps---f~lld~Kslki~gIr~FswsP~~~llAYwt  365 (698)
T KOG2314|consen  316 DDKYFARMTG-NSISIYETPS---FMLLDKKSLKISGIRDFSWSPTSNLLAYWT  365 (698)
T ss_pred             CCceeEEecc-ceEEEEecCc---eeeecccccCCccccCcccCCCcceEEEEc
Confidence            7888876655 4688999877   554432222335688889999888777543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.42  E-value=0.036  Score=43.56  Aligned_cols=123  Identities=16%  Similarity=0.209  Sum_probs=76.9

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCce-EEeeeee--ccccCcce---------eEE-Eee-ec
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAV-QLKRKFN--VNHKSSKY---------QVR-STF-CP  149 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~-~~~~~~~--~~h~~~~~---------~i~-~~~-s~  149 (223)
                      ...|+++.|.       ..|.+|++|..++  .+.++.-+... +..+.|.  ++|....-         .+. ..| .+
T Consensus        26 ad~ItaVefd-------~tg~YlatGDkgG--RVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~   96 (460)
T COG5170          26 ADKITAVEFD-------ETGLYLATGDKGG--RVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDD   96 (460)
T ss_pred             cceeeEEEec-------cccceEeecCCCc--eEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecC
Confidence            6789999999       8899999998878  66666544322 2221111  35543210         011 223 33


Q ss_pred             CcccCCCcEEEEecCCCcEEEEEcccCc-----------------cc------c-----------cc-----e-eecccc
Q psy3599         150 IMSFREGACVVTGSEDSCVYFLDIQSKE-----------------HK------N-----------AV-----N-KLQGHA  189 (223)
Q Consensus       150 ~~~~~~~~~l~sgs~dg~v~iwd~~~~~-----------------~~------~-----------~~-----~-~~~~h~  189 (223)
                      .    ....++..+.|..|++|.+..+.                 .+      +           .+     . .-.+|.
T Consensus        97 t----~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~  172 (460)
T COG5170          97 T----GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHP  172 (460)
T ss_pred             C----CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccce
Confidence            3    34566666789999999976520                 00      0           00     0 113677


Q ss_pred             cCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         190 CPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       190 ~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      --+++++|+.+...++++. |=.|.+|++.-
T Consensus       173 yhiNSiS~NsD~et~lSaD-dLrINLWnl~i  202 (460)
T COG5170         173 YHINSISFNSDKETLLSAD-DLRINLWNLEI  202 (460)
T ss_pred             eEeeeeeecCchheeeecc-ceeeeeccccc
Confidence            7789999999988888885 77788998764

>KOG0882|consensus

Probab=96.39  E-value=0.017  Score=47.34  Aligned_cols=144  Identities=15%  Similarity=0.085  Sum_probs=92.4

Q ss_pred             cCCcEEEEEECCCCceeeee---------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeC-CCeEEEEEecCCCceE
Q psy3599          58 STGVIVSILCDDLGRLSKGK---------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAA-NAVCILKVLDKEGAVQ  127 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~---------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~v~i~d~~~~~~  127 (223)
                      ....+...++|..-+.+...         .+..| ...|.+++-+       .++.++.+.++ +.  .++++|+.+-..
T Consensus        19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraH-L~~I~sl~~S-------~dg~L~~Sv~d~Dh--s~KvfDvEn~Dm   88 (558)
T KOG0882|consen   19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAH-LGVILSLAVS-------YDGWLFRSVEDPDH--SVKVFDVENFDM   88 (558)
T ss_pred             hhheEEeeecchhhhhcCCCCccceeehhhhHHH-HHHHHhhhcc-------ccceeEeeccCccc--ceeEEEeeccch
Confidence            34556666666644444322         22334 6678888888       89999999776 77  788888765433


Q ss_pred             EeeeeeccccCcceeEEEeeecCcccCCC--cEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEE
Q psy3599         128 LKRKFNVNHKSSKYQVRSTFCPIMSFREG--ACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLA  205 (223)
Q Consensus       128 ~~~~~~~~h~~~~~~i~~~~s~~~~~~~~--~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~  205 (223)
                      +.-.   .-...+..+.+..++.    +.  .+.++.-.+|.+.++|-.... .+....-+-|..+|.++.+++-+..++
T Consensus        89 inmi---KL~~lPg~a~wv~skG----d~~s~IAVs~~~sg~i~VvD~~~d~-~q~~~fkklH~sPV~~i~y~qa~Ds~v  160 (558)
T KOG0882|consen   89 INMI---KLVDLPGFAEWVTSKG----DKISLIAVSLFKSGKIFVVDGFGDF-CQDGYFKKLHFSPVKKIRYNQAGDSAV  160 (558)
T ss_pred             hhhc---ccccCCCceEEecCCC----CeeeeEEeecccCCCcEEECCcCCc-CccceecccccCceEEEEeecccccee
Confidence            3211   1111111144344541    11  344445567899999977621 233444455999999999999999999


Q ss_pred             EEeCCCcEEEeeCC
Q psy3599         206 TSDYQGLIILWSRE  219 (223)
Q Consensus       206 s~s~d~~i~iwd~~  219 (223)
                      +....|.|.-|...
T Consensus       161 SiD~~gmVEyWs~e  174 (558)
T KOG0882|consen  161 SIDISGMVEYWSAE  174 (558)
T ss_pred             eccccceeEeecCC
Confidence            99999999999876

>KOG2079|consensus

Probab=96.31  E-value=0.038  Score=50.02  Aligned_cols=101  Identities=24%  Similarity=0.316  Sum_probs=66.3

Q ss_pred             CCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCccc
Q psy3599         101 RDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHK  179 (223)
Q Consensus       101 ~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~  179 (223)
                      --+..++.|++.+  -+-..|....  +.......+...+  +++ +|+-     +|..++.|-.+|.|.+||+.+   +
T Consensus        97 ~~~~~ivi~Ts~g--hvl~~d~~~n--L~~~~~ne~v~~~--Vtsvafn~-----dg~~l~~G~~~G~V~v~D~~~---~  162 (1206)
T KOG2079|consen   97 IVVVPIVIGTSHG--HVLLSDMTGN--LGPLHQNERVQGP--VTSVAFNQ-----DGSLLLAGLGDGHVTVWDMHR---A  162 (1206)
T ss_pred             eeeeeEEEEcCch--hhhhhhhhcc--cchhhcCCccCCc--ceeeEecC-----CCceeccccCCCcEEEEEccC---C
Confidence            3456677777777  5555555433  1110001233333  777 8887     899999999999999999999   8


Q ss_pred             ccceeecccccCEEEE---EEecCCCEEEEEeCCCcEEEee
Q psy3599         180 NAVNKLQGHACPVLGV---SFNYDESLLATSDYQGLIILWS  217 (223)
Q Consensus       180 ~~~~~~~~h~~~v~~v---~~~~~~~~l~s~s~d~~i~iwd  217 (223)
                      +.++.+..|..+...+   .+..+++.+.++...|.  +|.
T Consensus       163 k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  163 KILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             cceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence            8888776665554444   44445667888877775  454

>KOG2444|consensus

Probab=96.26  E-value=0.024  Score=42.54  Aligned_cols=107  Identities=11%  Similarity=0.107  Sum_probs=63.9

Q ss_pred             CCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCccccc
Q psy3599         102 DPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNA  181 (223)
Q Consensus       102 ~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~  181 (223)
                      -+.-+++|+.++  .+.+|...........+. .-...   +.+.+...   .++.+..+++.||.|+.|++..   .+.
T Consensus        69 ~~~~~~vG~~dg--~v~~~n~n~~g~~~d~~~-s~~e~---i~~~Ip~~---~~~~~~c~~~~dg~ir~~n~~p---~k~  136 (238)
T KOG2444|consen   69 ASAKLMVGTSDG--AVYVFNWNLEGAHSDRVC-SGEES---IDLGIPNG---RDSSLGCVGAQDGRIRACNIKP---NKV  136 (238)
T ss_pred             cCceEEeecccc--eEEEecCCccchHHHhhh-ccccc---ceeccccc---cccceeEEeccCCceeeecccc---Cce
Confidence            345677777777  566666541111111111 11111   33322111   1456899999999999999988   666


Q ss_pred             ceeecccc-cCEEEEEEecCCCEEEEE--eCCCcEEEeeCCC
Q psy3599         182 VNKLQGHA-CPVLGVSFNYDESLLATS--DYQGLIILWSREK  220 (223)
Q Consensus       182 ~~~~~~h~-~~v~~v~~~~~~~~l~s~--s~d~~i~iwd~~~  220 (223)
                      +...-.|. .++.....+..+..++++  |.|..++.|++..
T Consensus       137 ~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  137 LGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            66666666 455555555566667777  7788888888754

>KOG1920|consensus

Probab=96.22  E-value=0.22  Score=45.93  Aligned_cols=114  Identities=20%  Similarity=0.315  Sum_probs=70.0

Q ss_pred             EEEEeecccccCCCCeEEEEEe---CCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecC
Q psy3599          89 CLSWRSWISREARDPTLLVNIA---ANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSE  164 (223)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~~~---~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~  164 (223)
                      +|.|-       -||.++++..   ..+.|.+++||.+ | .+...   +..... .-.+ +|-|     .|.++++-..
T Consensus       200 ~IsWR-------gDg~~fAVs~~~~~~~~RkirV~drE-g-~Lns~---se~~~~-l~~~LsWkP-----sgs~iA~iq~  261 (1265)
T KOG1920|consen  200 SISWR-------GDGEYFAVSFVESETGTRKIRVYDRE-G-ALNST---SEPVEG-LQHSLSWKP-----SGSLIAAIQC  261 (1265)
T ss_pred             eEEEc-------cCCcEEEEEEEeccCCceeEEEeccc-c-hhhcc---cCcccc-cccceeecC-----CCCeEeeeee
Confidence            48888       8999999743   2333589999987 3 22221   111111 1233 6888     5888876443


Q ss_pred             ---CCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEE---EeCCCcEEEeeCCC
Q psy3599         165 ---DSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLAT---SDYQGLIILWSREK  220 (223)
Q Consensus       165 ---dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s---~s~d~~i~iwd~~~  220 (223)
                         |+.|.+|.-..-..++....+......|..++|+.++..||+   ......|++|-+.+
T Consensus       262 ~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  262 KTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             cCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence               456877775431113333334444445899999999999888   44444599997654

>smart00320 WD40 WD40 repeats

Probab=96.14  E-value=0.021  Score=28.67  Aligned_cols=33  Identities=21%  Similarity=0.370  Sum_probs=26.9

Q ss_pred             eeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEec
Q psy3599          79 LVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLD  121 (223)
Q Consensus        79 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d  121 (223)
                      +..| ...|.++.|.       +.+.++++++.++  .+++|+
T Consensus         8 ~~~~-~~~i~~~~~~-------~~~~~~~~~~~d~--~~~~~~   40 (40)
T smart00320        8 LKGH-TGPVTSVAFS-------PDGKYLASASDDG--TIKLWD   40 (40)
T ss_pred             EEec-CCceeEEEEC-------CCCCEEEEecCCC--eEEEcC
Confidence            4445 7789999999       7778899999888  788875

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1912|consensus

Probab=96.12  E-value=0.044  Score=48.12  Aligned_cols=117  Identities=16%  Similarity=0.263  Sum_probs=80.3

Q ss_pred             eeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccC-------CCcE
Q psy3599          87 ITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFR-------EGAC  158 (223)
Q Consensus        87 i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~-------~~~~  158 (223)
                      -.+++|+       + +.+|+-|+.+.   +.+-|..+-+.+.. +. -|...   +.. .|.|.-.+.       ..-.
T Consensus        18 ~~A~Dw~-------~-~GLiAygshsl---V~VVDs~s~q~iqs-ie-~h~s~---V~~VrWap~~~p~~llS~~~~~ll   81 (1062)
T KOG1912|consen   18 RNAADWS-------P-SGLIAYGSHSL---VSVVDSRSLQLIQS-IE-LHQSA---VTSVRWAPAPSPRDLLSPSSSQLL   81 (1062)
T ss_pred             ccccccC-------c-cceEEEecCce---EEEEehhhhhhhhc-cc-cCccc---eeEEEeccCCCchhccCcccccee
Confidence            4567886       3 56777777655   55556655544443 22 56655   444 677642111       2336


Q ss_pred             EEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecC---C-CEEEEEeCCCcEEEeeCCCCC
Q psy3599         159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD---E-SLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       159 l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~---~-~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      |+++...|.|.+||+..   +..+..+..|.+++..++|-+.   . ..|+.-....++.+|+..+|+
T Consensus        82 iAsaD~~GrIil~d~~~---~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~  146 (1062)
T KOG1912|consen   82 IASADISGRIILVDFVL---ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE  146 (1062)
T ss_pred             EEeccccCcEEEEEehh---hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc
Confidence            77788889999999999   8888899999999999999763   2 456666667889999887765

>KOG4640|consensus

Probab=96.10  E-value=0.043  Score=46.89  Aligned_cols=94  Identities=12%  Similarity=0.164  Sum_probs=65.9

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEe
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTG  162 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sg  162 (223)
                      ...|.-+.|+       |.-.++|.+..++  .+-+..++ -+.+.. ++ -|....  .++ +|.|     ||+.|+.|
T Consensus        20 ~~~i~~~ewn-------P~~dLiA~~t~~g--elli~R~n-~qRlwt-ip-~p~~~v--~~sL~W~~-----DGkllaVg   80 (665)
T KOG4640|consen   20 PINIKRIEWN-------PKMDLIATRTEKG--ELLIHRLN-WQRLWT-IP-IPGENV--TASLCWRP-----DGKLLAVG   80 (665)
T ss_pred             ccceEEEEEc-------CccchhheeccCC--cEEEEEec-cceeEe-cc-CCCCcc--ceeeeecC-----CCCEEEEE
Confidence            4568889999       8999999888766  44444444 223433 22 244442  335 8999     89999999


Q ss_pred             cCCCcEEEEEcccCcccccceeec-ccccCEEEEEEec
Q psy3599         163 SEDSCVYFLDIQSKEHKNAVNKLQ-GHACPVLGVSFNY  199 (223)
Q Consensus       163 s~dg~v~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~~~  199 (223)
                      -.||+|++-|+.+   +..+..+. .-...|.++-|.|
T Consensus        81 ~kdG~I~L~Dve~---~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   81 FKDGTIRLHDVEK---GGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ecCCeEEEEEccC---CCceeccccccccchheeeccc
Confidence            9999999999999   76666532 2345677888864

>KOG1912|consensus

Probab=96.07  E-value=0.2  Score=44.20  Aligned_cols=127  Identities=11%  Similarity=0.169  Sum_probs=78.7

Q ss_pred             eeecCCCCeeEEEEeeccccc----CCCCe-EEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcc
Q psy3599          79 LVLSQDCPITCLSWRSWISRE----ARDPT-LLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMS  152 (223)
Q Consensus        79 ~~~~~~~~i~~l~~~~~~~~~----~~~~~-~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~  152 (223)
                      +..| ...|+.+.|.|.-.+-    |+... +|+++.-.+  .|-+||...+..+..   ..|....  +.. +|-+.- 
T Consensus        51 ie~h-~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G--rIil~d~~~~s~~~~---l~~~~~~--~qdl~W~~~r-  121 (1062)
T KOG1912|consen   51 IELH-QSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG--RIILVDFVLASVINW---LSHSNDS--VQDLCWVPAR-  121 (1062)
T ss_pred             cccC-ccceeEEEeccCCCchhccCccccceeEEeccccC--cEEEEEehhhhhhhh---hcCCCcc--hhheeeeecc-
Confidence            3444 7899999998521111    12123 455565566  788899887755543   2333333  333 565521 


Q ss_pred             cCCC-cEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEec-CCCEEEEEeCCCcEEEeeC
Q psy3599         153 FREG-ACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNY-DESLLATSDYQGLIILWSR  218 (223)
Q Consensus       153 ~~~~-~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~d~~i~iwd~  218 (223)
                       .+. +++++-....++-+|+..+   |+.+-+.........|+.+.| +...+..-+..|.+.+.+.
T Consensus       122 -d~Srd~LlaIh~ss~lvLwntdt---G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  122 -DDSRDVLLAIHGSSTLVLWNTDT---GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             -CcchheeEEecCCcEEEEEEccC---CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence             123 5666666677899999999   888887776556677899888 3444444445677766553

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.02  E-value=0.25  Score=32.94  Aligned_cols=89  Identities=12%  Similarity=0.106  Sum_probs=54.4

Q ss_pred             eEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccc
Q psy3599         104 TLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAV  182 (223)
Q Consensus       104 ~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~  182 (223)
                      ..|+.|++|.  .|++|+-.  ..+.. +  .-...   +.+ .-.      .+..++.+..+|+|-+|+-..   .  +
T Consensus        16 ~eLlvGs~D~--~IRvf~~~--e~~~E-i--~e~~~---v~~L~~~------~~~~F~Y~l~NGTVGvY~~~~---R--l   74 (111)
T PF14783_consen   16 NELLVGSDDF--EIRVFKGD--EIVAE-I--TETDK---VTSLCSL------GGGRFAYALANGTVGVYDRSQ---R--L   74 (111)
T ss_pred             ceEEEecCCc--EEEEEeCC--cEEEE-E--ecccc---eEEEEEc------CCCEEEEEecCCEEEEEeCcc---e--e
Confidence            5788889999  89998754  23332 2  22333   332 222      357789999999999998654   2  3


Q ss_pred             eeecccccCEEEEEEec-C--CC-EEEEEeCCCcEE
Q psy3599         183 NKLQGHACPVLGVSFNY-D--ES-LLATSDYQGLII  214 (223)
Q Consensus       183 ~~~~~h~~~v~~v~~~~-~--~~-~l~s~s~d~~i~  214 (223)
                      -..+. +..+.++.+.. +  |. -|++|-.+|.|-
T Consensus        75 WRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 WRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            33332 23356665543 2  22 588888888774

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=95.77  E-value=0.084  Score=40.08  Aligned_cols=94  Identities=18%  Similarity=0.207  Sum_probs=57.3

Q ss_pred             EEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEE
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGV  195 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v  195 (223)
                      .+..+|..+++.+...- .+.....  ..+...+     ++..+++++.++.++.||..+   ++.+..+.. ...+...
T Consensus         4 ~l~~~d~~tG~~~W~~~-~~~~~~~--~~~~~~~-----~~~~v~~~~~~~~l~~~d~~t---G~~~W~~~~-~~~~~~~   71 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYD-LGPGIGG--PVATAVP-----DGGRVYVASGDGNLYALDAKT---GKVLWRFDL-PGPISGA   71 (238)
T ss_dssp             EEEEEETTTTEEEEEEE-CSSSCSS--EEETEEE-----ETTEEEEEETTSEEEEEETTT---SEEEEEEEC-SSCGGSG
T ss_pred             EEEEEECCCCCEEEEEE-CCCCCCC--ccceEEE-----eCCEEEEEcCCCEEEEEECCC---CCEEEEeec-cccccce
Confidence            67788988887776531 1111111  2211122     366777778999999999998   777665553 2211111


Q ss_pred             EEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         196 SFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       196 ~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      . ...+..++.++.++.+..+|.++|+
T Consensus        72 ~-~~~~~~v~v~~~~~~l~~~d~~tG~   97 (238)
T PF13360_consen   72 P-VVDGGRVYVGTSDGSLYALDAKTGK   97 (238)
T ss_dssp             E-EEETTEEEEEETTSEEEEEETTTSC
T ss_pred             e-eecccccccccceeeeEecccCCcc
Confidence            1 2245556666678899999988876

...

>KOG2066|consensus

Probab=95.71  E-value=0.058  Score=47.36  Aligned_cols=101  Identities=17%  Similarity=0.273  Sum_probs=70.7

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS  163 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs  163 (223)
                      ...++|++++         +.+|+-|.-++  .+++.+.....  ...  ..|+..        ..     +|.+++|||
T Consensus        39 ~D~is~~av~---------~~~~~~GtH~g--~v~~~~~~~~~--~~~--~~~s~~--------~~-----~Gey~asCS   90 (846)
T KOG2066|consen   39 NDAISCCAVH---------DKFFALGTHRG--AVYLTTCQGNP--KTN--FDHSSS--------IL-----EGEYVASCS   90 (846)
T ss_pred             hhHHHHHHhh---------cceeeeccccc--eEEEEecCCcc--ccc--cccccc--------cc-----CCceEEEec
Confidence            4567777765         78888888777  67776655331  211  133222        11     699999999


Q ss_pred             CCCcEEEEEcccCcccccceeecccccCEEEEEEecC-----CCEEEEEeCCCcEEEee
Q psy3599         164 EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD-----ESLLATSDYQGLIILWS  217 (223)
Q Consensus       164 ~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~-----~~~l~s~s~d~~i~iwd  217 (223)
                      .||.|-|..+-+   .+...++.- ..++.+|+++|+     ...+++||..| +.++.
T Consensus        91 ~DGkv~I~sl~~---~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~e  144 (846)
T KOG2066|consen   91 DDGKVVIGSLFT---DDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSE  144 (846)
T ss_pred             CCCcEEEeeccC---CccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEeh
Confidence            999999988888   565555553 457899999997     45788998877 76654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.56  E-value=0.05  Score=30.27  Aligned_cols=27  Identities=26%  Similarity=0.550  Sum_probs=24.3

Q ss_pred             EEE-eeecCcccCCCcEEEEecCCCcEEEEEcc
Q psy3599         143 VRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQ  174 (223)
Q Consensus       143 i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~  174 (223)
                      +.+ .|||     ..++++.|+.+|.|.++.+.
T Consensus        14 v~~~~w~P-----~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   14 VSCMSWCP-----TMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             EEEEEECC-----CCCEEEEEECCCeEEEEECC
Confidence            666 8999     69999999999999999984

>KOG2041|consensus

Probab=95.51  E-value=0.073  Score=46.46  Aligned_cols=119  Identities=15%  Similarity=0.167  Sum_probs=78.5

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      .+.+| ...|.-+.|.       ...+.|.++..++  .|-+|-+-.+....... ......+  +.+ +|+.     +|
T Consensus        66 tLeGH-~~sV~vvTWN-------e~~QKLTtSDt~G--lIiVWmlykgsW~EEMi-NnRnKSv--V~SmsWn~-----dG  127 (1189)
T KOG2041|consen   66 TLEGH-NASVMVVTWN-------ENNQKLTTSDTSG--LIIVWMLYKGSWCEEMI-NNRNKSV--VVSMSWNL-----DG  127 (1189)
T ss_pred             hhccC-cceEEEEEec-------cccccccccCCCc--eEEEEeeecccHHHHHh-hCcCccE--EEEEEEcC-----CC
Confidence            56677 8899999998       7777788877888  77778765554333221 1222222  555 8888     78


Q ss_pred             cEEEEecCCCcEEEEEcccCccccc-ceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         157 ACVVTGSEDSCVYFLDIQSKEHKNA-VNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      ..++..-+||.|.+=.++.   ... =+.+++  .....+.|++|...++.+-..|.+.+||-.
T Consensus       128 ~kIcIvYeDGavIVGsvdG---NRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnq  186 (1189)
T KOG2041|consen  128 TKICIVYEDGAVIVGSVDG---NRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQ  186 (1189)
T ss_pred             cEEEEEEccCCEEEEeecc---ceecchhcch--heccceeecccHHHHHhhhcCCcEEEeccc
Confidence            8888888888887765553   211 122332  123467899987777777778888888854

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.37  E-value=0.077  Score=28.77  Aligned_cols=31  Identities=23%  Similarity=0.242  Sum_probs=26.2

Q ss_pred             cCEEEEEEecC-C--CEEEEEeCCCcEEEeeCCC
Q psy3599         190 CPVLGVSFNYD-E--SLLATSDYQGLIILWSREK  220 (223)
Q Consensus       190 ~~v~~v~~~~~-~--~~l~s~s~d~~i~iwd~~~  220 (223)
                      +.|.++.|+|. +  .+|+.+-.-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            35889999985 3  5888888889999999994

It contains a characteristic DLL sequence motif.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.15  E-value=1.2  Score=34.97  Aligned_cols=138  Identities=14%  Similarity=0.182  Sum_probs=85.7

Q ss_pred             ccccccccCCcEEEEEECCCCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEee
Q psy3599          51 LRNDQLRSTGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKR  130 (223)
Q Consensus        51 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~  130 (223)
                      +...+...+|.....-++..|+++....+    ...-..|.|+      |..+.-++.+-.-+- ...++|.+....+..
T Consensus        38 fasaf~~~dgs~g~a~~~eaGk~v~~~~l----paR~Hgi~~~------p~~~ravafARrPGt-f~~vfD~~~~~~pv~  106 (366)
T COG3490          38 FASAFDARDGSFGAATLSEAGKIVFATAL----PARGHGIAFH------PALPRAVAFARRPGT-FAMVFDPNGAQEPVT  106 (366)
T ss_pred             heeeeeccCCceeEEEEccCCceeeeeec----ccccCCeecC------CCCcceEEEEecCCc-eEEEECCCCCcCcEE
Confidence            33334445666666677777777654322    2234467777      233444555444331 456788877655543


Q ss_pred             eeeccccCcceeEEEeeecCcccCCCcEEEEecCC-----CcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEE
Q psy3599         131 KFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSED-----SCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLA  205 (223)
Q Consensus       131 ~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~d-----g~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~  205 (223)
                      .  ...++..+-=...|+|     +|.+|++.-+|     |.|-+||.+..  ..-+..+..|.-.-..+.+.+||..++
T Consensus       107 ~--~s~~~RHfyGHGvfs~-----dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlv  177 (366)
T COG3490         107 L--VSQEGRHFYGHGVFSP-----DGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLV  177 (366)
T ss_pred             E--ecccCceeecccccCC-----CCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEE
Confidence            2  2333333212226899     79988876554     67899999861  345677788877788899999999988


Q ss_pred             EEe
Q psy3599         206 TSD  208 (223)
Q Consensus       206 s~s  208 (223)
                      .+.
T Consensus       178 van  180 (366)
T COG3490         178 VAN  180 (366)
T ss_pred             EeC
Confidence            875

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=95.11  E-value=1.2  Score=34.70  Aligned_cols=39  Identities=10%  Similarity=0.184  Sum_probs=31.5

Q ss_pred             EEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccc
Q psy3599         143 VRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHA  189 (223)
Q Consensus       143 i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~  189 (223)
                      .+...+|     ++..|++...+|.|.+|++.+   ..+..+++.++
T Consensus       233 ~kmSlSP-----dg~~La~ih~sG~lsLW~iPs---L~~~~~W~~~e  271 (282)
T PF15492_consen  233 FKMSLSP-----DGSLLACIHFSGSLSLWEIPS---LRLQRSWKQDE  271 (282)
T ss_pred             EEEEECC-----CCCEEEEEEcCCeEEEEecCc---chhhcccchhh
Confidence            4446788     899999999999999999998   77666665443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=94.90  E-value=0.57  Score=31.26  Aligned_cols=56  Identities=14%  Similarity=0.108  Sum_probs=41.1

Q ss_pred             CcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeC
Q psy3599         156 GACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       156 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      .+-|+.||+|..|++|+-..     .+..+..+ ..|.++.-... ..|+.+-.+|+|-+|+-
T Consensus        15 ~~eLlvGs~D~~IRvf~~~e-----~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen   15 ENELLVGSDDFEIRVFKGDE-----IVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             cceEEEecCCcEEEEEeCCc-----EEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence            47899999999999988544     56667653 45777765544 66888888888777653

>KOG2395|consensus

Probab=94.87  E-value=0.72  Score=39.15  Aligned_cols=60  Identities=18%  Similarity=0.237  Sum_probs=46.5

Q ss_pred             CCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeC
Q psy3599         155 EGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       155 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      ...+|+.||.+|.|++||.-.   ...-..+.+-..+|..|..+.+|..++..+ +..+.+-|+
T Consensus       440 ~sG~IvvgS~~GdIRLYdri~---~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  440 ESGYIVVGSLKGDIRLYDRIG---RRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             CCceEEEeecCCcEEeehhhh---hhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            567899999999999999854   445556777788999999999999766555 555655554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=94.54  E-value=1  Score=35.80  Aligned_cols=97  Identities=13%  Similarity=0.159  Sum_probs=63.6

Q ss_pred             CCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecC-----CCcEEEEEcccC
Q psy3599         102 DPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE-----DSCVYFLDIQSK  176 (223)
Q Consensus       102 ~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~-----dg~v~iwd~~~~  176 (223)
                      .+..++.+-..+- ...++|..++...... . ...+..+-=...|++     +|.+|++.=.     .|.|-|||....
T Consensus        16 ~~~avafaRRPG~-~~~v~D~~~g~~~~~~-~-a~~gRHFyGHg~fs~-----dG~~LytTEnd~~~g~G~IgVyd~~~~   87 (305)
T PF07433_consen   16 RPEAVAFARRPGT-FALVFDCRTGQLLQRL-W-APPGRHFYGHGVFSP-----DGRLLYTTENDYETGRGVIGVYDAARG   87 (305)
T ss_pred             CCeEEEEEeCCCc-EEEEEEcCCCceeeEE-c-CCCCCEEecCEEEcC-----CCCEEEEeccccCCCcEEEEEEECcCC
Confidence            5555666655442 4567788887655432 1 333333111236899     7999988544     478999999931


Q ss_pred             cccccceeecccccCEEEEEEecCCCEEEEEe
Q psy3599         177 EHKNAVNKLQGHACPVLGVSFNYDESLLATSD  208 (223)
Q Consensus       177 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s  208 (223)
                        -..+..+..|.-.-..+.+.||+..|+.+.
T Consensus        88 --~~ri~E~~s~GIGPHel~l~pDG~tLvVAN  117 (305)
T PF07433_consen   88 --YRRIGEFPSHGIGPHELLLMPDGETLVVAN  117 (305)
T ss_pred             --cEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence              566777777766667788999998887774

>KOG1008|consensus

Probab=94.48  E-value=0.011  Score=50.56  Aligned_cols=120  Identities=13%  Similarity=0.110  Sum_probs=74.2

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEe
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTG  162 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sg  162 (223)
                      ...+.|+++..+     .+...++.|..++  .|-+-...........+..++...   .++ +|++.    |.++|++|
T Consensus        56 tqy~kcva~~y~-----~d~cIlavG~atG--~I~l~s~r~~hdSs~E~tp~~ar~---Ct~lAwneL----Dtn~LAag  121 (783)
T KOG1008|consen   56 TQYVKCVASFYG-----NDRCILAVGSATG--NISLLSVRHPHDSSAEVTPGYARP---CTSLAWNEL----DTNHLAAG  121 (783)
T ss_pred             CCCceeehhhcC-----CchhhhhhccccC--ceEEeecCCcccccceeccccccc---ccccccccc----cHHHHHhh
Confidence            345666766521     4445677777666  454444332222211222355444   555 89887    77888887


Q ss_pred             cC----CCcEEEEEcccCccc--ccce--eecc-cccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         163 SE----DSCVYFLDIQSKEHK--NAVN--KLQG-HACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       163 s~----dg~v~iwd~~~~~~~--~~~~--~~~~-h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      -.    |..+.|||+.+   +  .+..  .+.+ ......+++|-.+..++.+|...+.+.++|+|.
T Consensus       122 ldkhrnds~~~Iwdi~s---~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq  185 (783)
T KOG1008|consen  122 LDKHRNDSSLKIWDINS---LLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ  185 (783)
T ss_pred             hhhhcccCCccceeccc---ccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhh
Confidence            53    56899999987   3  2211  1111 233456888888888888998888999999873

>PRK02888 nitrous-oxide reductase; Validated

Probab=94.39  E-value=2.1  Score=37.53  Aligned_cols=66  Identities=18%  Similarity=0.274  Sum_probs=46.7

Q ss_pred             eeecCcccCCCcEEEE-ecCCCcEEEEEcccCccccc------------ceeecccccCEEEEEEecCCCEEEEEeCCCc
Q psy3599         146 TFCPIMSFREGACVVT-GSEDSCVYFLDIQSKEHKNA------------VNKLQGHACPVLGVSFNYDESLLATSDYQGL  212 (223)
Q Consensus       146 ~~s~~~~~~~~~~l~s-gs~dg~v~iwd~~~~~~~~~------------~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~  212 (223)
                      .++|     |+.+++. +..+..|.+.|+.+   .+.            +...+--. .-...+|.++|+...|-..|..
T Consensus       327 ~vSP-----DGkylyVanklS~tVSVIDv~k---~k~~~~~~~~~~~~vvaevevGl-GPLHTaFDg~G~aytslf~dsq  397 (635)
T PRK02888        327 NTSP-----DGKYFIANGKLSPTVTVIDVRK---LDDLFDGKIKPRDAVVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQ  397 (635)
T ss_pred             EECC-----CCCEEEEeCCCCCcEEEEEChh---hhhhhhccCCccceEEEeeccCC-CcceEEECCCCCEEEeEeecce
Confidence            5888     6776654 55588999999987   332            22222222 2345788999998888889999


Q ss_pred             EEEeeCCC
Q psy3599         213 IILWSREK  220 (223)
Q Consensus       213 i~iwd~~~  220 (223)
                      |--||+.+
T Consensus       398 v~kwn~~~  405 (635)
T PRK02888        398 IVKWNIEA  405 (635)
T ss_pred             eEEEehHH
Confidence            99999864

>KOG1008|consensus

Probab=94.22  E-value=0.025  Score=48.48  Aligned_cols=115  Identities=15%  Similarity=0.167  Sum_probs=68.8

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeee-ccccCcceeEEEeeecCcccCCCcEEEEe
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFN-VNHKSSKYQVRSTFCPIMSFREGACVVTG  162 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~-~~h~~~~~~i~~~~s~~~~~~~~~~l~sg  162 (223)
                      .....+++|.       .+..++.+|....  .+.++|+.........+. +.|++.      ...|.    .++++++-
T Consensus       154 l~gqns~cwl-------rd~klvlaGm~sr--~~~ifdlRqs~~~~~svnTk~vqG~------tVdp~----~~nY~cs~  214 (783)
T KOG1008|consen  154 LDGQNSVCWL-------RDTKLVLAGMTSR--SVHIFDLRQSLDSVSSVNTKYVQGI------TVDPF----SPNYFCSN  214 (783)
T ss_pred             ccCccccccc-------cCcchhhcccccc--hhhhhhhhhhhhhhhhhhhhhcccc------eecCC----CCCceecc
Confidence            3455577777       7778888888766  677877752211111111 233333      24554    46777765


Q ss_pred             cCCCcEEEEE-cccCcccccceeeccccc----CEEEEEEecCC-CEEEEEe-CCCcEEEeeCCC
Q psy3599         163 SEDSCVYFLD-IQSKEHKNAVNKLQGHAC----PVLGVSFNYDE-SLLATSD-YQGLIILWSREK  220 (223)
Q Consensus       163 s~dg~v~iwd-~~~~~~~~~~~~~~~h~~----~v~~v~~~~~~-~~l~s~s-~d~~i~iwd~~~  220 (223)
                      . ||.|.+|| ..+.  ..++..+...+.    .+..++|+|.. ..+++.. ..++|+++|+..
T Consensus       215 ~-dg~iAiwD~~rni--enpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  215 S-DGDIAIWDTYRNI--ENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             c-cCceeeccchhhh--ccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            5 99999999 4441  233444432222    48999999963 3455555 457899999753

>KOG1920|consensus

Probab=94.10  E-value=2.7  Score=39.32  Aligned_cols=67  Identities=15%  Similarity=0.198  Sum_probs=44.5

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEe
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTG  162 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sg  162 (223)
                      +..|.++.|.       .++..++.+...+  .+.+-|.++.....    .|.....  |.+ +|+|     |+.+++..
T Consensus        68 d~~i~s~~fl-------~d~~~i~v~~~~G--~iilvd~et~~~ei----vg~vd~G--I~aaswS~-----Dee~l~li  127 (1265)
T KOG1920|consen   68 DDEIVSVQFL-------ADTNSICVITALG--DIILVDPETLELEI----VGNVDNG--ISAASWSP-----DEELLALI  127 (1265)
T ss_pred             CcceEEEEEe-------cccceEEEEecCC--cEEEEcccccceee----eeeccCc--eEEEeecC-----CCcEEEEE
Confidence            4589999998       7777666666555  44455776653322    2444443  666 8999     78888888


Q ss_pred             cCCCcEEE
Q psy3599         163 SEDSCVYF  170 (223)
Q Consensus       163 s~dg~v~i  170 (223)
                      +.++.+.+
T Consensus       128 T~~~tll~  135 (1265)
T KOG1920|consen  128 TGRQTLLF  135 (1265)
T ss_pred             eCCcEEEE
Confidence            77777665

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=94.06  E-value=1  Score=37.33  Aligned_cols=107  Identities=13%  Similarity=0.128  Sum_probs=60.6

Q ss_pred             CeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcce------eEEEeeecCcccCCCcEEEEecCCCcEEEEEcccC
Q psy3599         103 PTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKY------QVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSK  176 (223)
Q Consensus       103 ~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~------~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~  176 (223)
                      +..+...+.++  .+.-+|.++|+.+...-. .......      .+..  .|.   ..+..++.++.+|.++.+|.++ 
T Consensus        69 ~~~vy~~~~~g--~l~ald~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~--~~~---v~~~~v~v~~~~g~l~ald~~t-  139 (394)
T PRK11138         69 YNKVYAADRAG--LVKALDADTGKEIWSVDL-SEKDGWFSKNKSALLSG--GVT---VAGGKVYIGSEKGQVYALNAED-  139 (394)
T ss_pred             CCEEEEECCCC--eEEEEECCCCcEeeEEcC-CCccccccccccccccc--ccE---EECCEEEEEcCCCEEEEEECCC-
Confidence            34445555555  566668888876654211 1110000      0110  111   1456677788999999999999 


Q ss_pred             cccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         177 EHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       177 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                        ++.+-+.+.......+...  .+..++.++.++.+..+|.++|+
T Consensus       140 --G~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~  181 (394)
T PRK11138        140 --GEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGA  181 (394)
T ss_pred             --CCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCC
Confidence              8877666543221111111  24456667778889999988876

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=93.90  E-value=1.1  Score=37.19  Aligned_cols=58  Identities=12%  Similarity=0.210  Sum_probs=41.0

Q ss_pred             CcEEEEecCCCcEEEEEcccCcccccceeecccccCEEE-EEEecCCCEEEEEeCCCcEEEeeC
Q psy3599         156 GACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLG-VSFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       156 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      +..++.++.||.+++.|..+   ++.+...+-....+.+ ..+  .+..|..++.||.+..+++
T Consensus       335 ~g~l~v~~~~G~l~~ld~~t---G~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        335 NGYLVVGDSEGYLHWINRED---GRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CCEEEEEeCCCEEEEEECCC---CCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            56778889999999999998   8877766543332321 122  2457888889999988764

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=93.64  E-value=0.71  Score=38.72  Aligned_cols=111  Identities=13%  Similarity=0.152  Sum_probs=60.9

Q ss_pred             eEEEEeecccccCCCCeEEEEEe-CCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEE-ecC
Q psy3599          88 TCLSWRSWISREARDPTLLVNIA-ANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVT-GSE  164 (223)
Q Consensus        88 ~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~s-gs~  164 (223)
                      ..-+|+       |||..|+-++ .++..-+-+.|+.++....  +  .+....  -.. .|+|     +|..++- .+.
T Consensus       241 ~~P~fs-------pDG~~l~f~~~rdg~~~iy~~dl~~~~~~~--L--t~~~gi--~~~Ps~sp-----dG~~ivf~Sdr  302 (425)
T COG0823         241 GAPAFS-------PDGSKLAFSSSRDGSPDIYLMDLDGKNLPR--L--TNGFGI--NTSPSWSP-----DGSKIVFTSDR  302 (425)
T ss_pred             CCccCC-------CCCCEEEEEECCCCCccEEEEcCCCCccee--c--ccCCcc--ccCccCCC-----CCCEEEEEeCC
Confidence            345677       8888877554 5553356677877665222  1  222221  113 6888     6766654 444


Q ss_pred             CCc--EEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCC-Cc--EEEeeCCC
Q psy3599         165 DSC--VYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQ-GL--IILWSREK  220 (223)
Q Consensus       165 dg~--v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d-~~--i~iwd~~~  220 (223)
                      .|.  |++.+.+.   ... ..+......-....|+|+|..++..+.. |.  |.+.|+.+
T Consensus       303 ~G~p~I~~~~~~g---~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~  359 (425)
T COG0823         303 GGRPQIYLYDLEG---SQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS  359 (425)
T ss_pred             CCCcceEEECCCC---Cce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence            565  44555554   332 2222222222377899999998887743 33  55555544

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.52  E-value=0.59  Score=35.45  Aligned_cols=61  Identities=15%  Similarity=0.232  Sum_probs=46.0

Q ss_pred             CCcEEEEecCCCcEEEEEcccCccccccee-------ec-------ccccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         155 EGACVVTGSEDSCVYFLDIQSKEHKNAVNK-------LQ-------GHACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       155 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-------~~-------~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      .+.++++-+.+|.+++||+.+   ++++..       +.       .....|..+..+.+|.-+++-+ +|....|+..
T Consensus        21 ~~~~Ll~iT~~G~l~vWnl~~---~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   21 NGSYLLAITSSGLLYVWNLKK---GKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             CCCEEEEEeCCCeEEEEECCC---CeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            578899999999999999998   543322       11       2445788888898888777776 6788888764

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1832|consensus

Probab=93.36  E-value=0.12  Score=46.30  Aligned_cols=70  Identities=20%  Similarity=0.242  Sum_probs=57.5

Q ss_pred             EEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCC--cEEEeeCC
Q psy3599         143 VRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE  219 (223)
Q Consensus       143 i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~--~i~iwd~~  219 (223)
                      .+| +|+.     +.++|+.|+..|.|+++++.+   +.-......|..+|+.+.=+.+|.++++.+.-.  -.-+|+..
T Consensus      1104 fTc~afs~-----~~~hL~vG~~~Geik~~nv~s---G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1104 FTCIAFSG-----GTNHLAVGSHAGEIKIFNVSS---GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred             eeeEEeec-----CCceEEeeeccceEEEEEccC---ccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence            444 8988     789999999999999999999   888888899999999998888888877665332  35688865


Q ss_pred             C
Q psy3599         220 K  220 (223)
Q Consensus       220 ~  220 (223)
                      .
T Consensus      1176 s 1176 (1516)
T KOG1832|consen 1176 S 1176 (1516)
T ss_pred             c
Confidence            3

>KOG2114|consensus

Probab=93.06  E-value=1.1  Score=40.07  Aligned_cols=106  Identities=16%  Similarity=0.223  Sum_probs=65.1

Q ss_pred             CCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCC-----cEEEEEccc
Q psy3599         101 RDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDS-----CVYFLDIQS  175 (223)
Q Consensus       101 ~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg-----~v~iwd~~~  175 (223)
                      +.+..++.|+.++  .|.+++  .+..+...|. .+....  +...+.-.    ..++|++-++|+     .+++|+++.
T Consensus        33 s~~~~vvigt~~G--~V~~Ln--~s~~~~~~fq-a~~~si--v~~L~~~~----~~~~L~sv~Ed~~~np~llkiw~lek  101 (933)
T KOG2114|consen   33 SSTGSVVIGTADG--RVVILN--SSFQLIRGFQ-AYEQSI--VQFLYILN----KQNFLFSVGEDEQGNPVLLKIWDLEK  101 (933)
T ss_pred             CCCceEEEeeccc--cEEEec--ccceeeehhe-ecchhh--hhHhhccc----CceEEEEEeecCCCCceEEEEecccc
Confidence            6788888888777  454443  4444433443 444332  33223331    346788777764     489999976


Q ss_pred             C-cc--cccce--eecc-----cccCEEEEEEecCCCEEEEEeCCCcEEEee
Q psy3599         176 K-EH--KNAVN--KLQG-----HACPVLGVSFNYDESLLATSDYQGLIILWS  217 (223)
Q Consensus       176 ~-~~--~~~~~--~~~~-----h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd  217 (223)
                      . ++  ..+++  .+..     ...++.+++.+.+-..+|+|-.+|.|.++.
T Consensus       102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~  153 (933)
T KOG2114|consen  102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK  153 (933)
T ss_pred             cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence            2 11  22331  1111     245788999999989999999999998773

>KOG2114|consensus

Probab=92.87  E-value=4.1  Score=36.76  Aligned_cols=117  Identities=9%  Similarity=0.192  Sum_probs=70.0

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcE-EEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGAC-VVT  161 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~-l~s  161 (223)
                      ..|+++++.+       .+-..+|+|-.+|  .|-.+.-+--+.........|.+.. +|+. .+..     ++.. ++.
T Consensus       125 ~~p~s~l~Vs-------~~l~~Iv~Gf~nG--~V~~~~GDi~RDrgsr~~~~~~~~~-pITgL~~~~-----d~~s~lFv  189 (933)
T KOG2114|consen  125 PSPASSLAVS-------EDLKTIVCGFTNG--LVICYKGDILRDRGSRQDYSHRGKE-PITGLALRS-----DGKSVLFV  189 (933)
T ss_pred             CCcceEEEEE-------ccccEEEEEecCc--EEEEEcCcchhccccceeeeccCCC-CceeeEEec-----CCceeEEE
Confidence            6688899998       8888888888888  5554432211000101112333332 2665 5554     3443 222


Q ss_pred             ecCCCcEEEEEcccCccccc-ceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         162 GSEDSCVYFLDIQSKEHKNA-VNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       162 gs~dg~v~iwd~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      . .-..|.+|.+..   ..+ ...+..|...+.|..+++....+++++ +..+.+||...
T Consensus       190 ~-Tt~~V~~y~l~g---r~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~  244 (933)
T KOG2114|consen  190 A-TTEQVMLYSLSG---RTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDG  244 (933)
T ss_pred             E-ecceeEEEEecC---CCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCC
Confidence            2 234688888886   333 444677777899999988766565655 45688887654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=92.81  E-value=4.3  Score=36.85  Aligned_cols=110  Identities=17%  Similarity=0.216  Sum_probs=62.8

Q ss_pred             CCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccC--CCcEEEEecCCCcEEEEEcccCcc
Q psy3599         101 RDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFR--EGACVVTGSEDSCVYFLDIQSKEH  178 (223)
Q Consensus       101 ~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~--~~~~l~sgs~dg~v~iwd~~~~~~  178 (223)
                      .+..+|+....+.- .+.-.|++.|+.+.. +. -+....  +. .+.|...+.  .+.-.+.|-.+..+..||.+..+ 
T Consensus       491 ~d~~mil~~~~~~~-~ly~mDLe~GKVV~e-W~-~~~~~~--v~-~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~-  563 (794)
T PF08553_consen  491 QDRNMILLDPNNPN-KLYKMDLERGKVVEE-WK-VHDDIP--VV-DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG-  563 (794)
T ss_pred             cccceEeecCCCCC-ceEEEecCCCcEEEE-ee-cCCCcc--ee-EecccccccccCCCceEEEECCCceEEeccCCCC-
Confidence            45566665432221 344458998977664 43 343331  22 344432111  24455667788889999998732 


Q ss_pred             cccce-eec--ccccCEEEEEEecCCCEEEEEeCCCcEEEeeC
Q psy3599         179 KNAVN-KLQ--GHACPVLGVSFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       179 ~~~~~-~~~--~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      .+++. ..+  .......|++-+.+|. ||.||.+|.||+||-
T Consensus       564 ~k~v~~~~k~Y~~~~~Fs~~aTt~~G~-iavgs~~G~IRLyd~  605 (794)
T PF08553_consen  564 NKLVDSQSKQYSSKNNFSCFATTEDGY-IAVGSNKGDIRLYDR  605 (794)
T ss_pred             CceeeccccccccCCCceEEEecCCce-EEEEeCCCcEEeecc
Confidence            12221 111  1233456776655554 899999999999983

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.71  E-value=4.3  Score=32.45  Aligned_cols=109  Identities=14%  Similarity=0.230  Sum_probs=55.4

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEe
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTG  162 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sg  162 (223)
                      ...+..+.-+       ++|.++++++.+.  .+..||.....-....  .. ....  +.. .|.|     ++.+.+.+
T Consensus       144 ~gs~~~~~r~-------~dG~~vavs~~G~--~~~s~~~G~~~w~~~~--r~-~~~r--iq~~gf~~-----~~~lw~~~  204 (302)
T PF14870_consen  144 SGSINDITRS-------SDGRYVAVSSRGN--FYSSWDPGQTTWQPHN--RN-SSRR--IQSMGFSP-----DGNLWMLA  204 (302)
T ss_dssp             ---EEEEEE--------TTS-EEEEETTSS--EEEEE-TT-SS-EEEE-----SSS---EEEEEE-T-----TS-EEEEE
T ss_pred             cceeEeEEEC-------CCCcEEEEECccc--EEEEecCCCccceEEc--cC-ccce--ehhceecC-----CCCEEEEe
Confidence            4678888888       9999999999888  7777775432122111  12 2233  666 7998     66665544


Q ss_pred             cCCCcEEEEEc-ccCcc-cccceeecccccCEEEEEEecCCCEEEEEeCCCcE
Q psy3599         163 SEDSCVYFLDI-QSKEH-KNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLI  213 (223)
Q Consensus       163 s~dg~v~iwd~-~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i  213 (223)
                       ..|.|++=+. ..... .+.+..+..-.-.+.+++|.++....++|+ .|.+
T Consensus       205 -~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l  255 (302)
T PF14870_consen  205 -RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL  255 (302)
T ss_dssp             -TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E
T ss_pred             -CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE
Confidence             7788887661 12000 011122222233589999999988888776 4433

>KOG2079|consensus

Probab=92.50  E-value=0.18  Score=45.98  Aligned_cols=67  Identities=22%  Similarity=0.336  Sum_probs=51.3

Q ss_pred             CCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCCC
Q psy3599         155 EGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHEP  223 (223)
Q Consensus       155 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~  223 (223)
                      .+..++.|+..|.+-..|....  -.++..-+.-.++|++++|+.+|.+++.|-.+|.|.+||..++++
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~  164 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI  164 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc
Confidence            3667888998899988887761  122222233456899999999999999999999999999987653

>KOG3617|consensus

Probab=92.39  E-value=0.26  Score=44.13  Aligned_cols=71  Identities=13%  Similarity=0.195  Sum_probs=54.1

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecC
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSE  164 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~  164 (223)
                      .+++++|+       |...+|+.+=.-+  .+.+|...+.+.-  .....|...   +.. .|||     +|..++++..
T Consensus        61 hatSLCWH-------pe~~vLa~gwe~g--~~~v~~~~~~e~h--tv~~th~a~---i~~l~wS~-----~G~~l~t~d~  121 (1416)
T KOG3617|consen   61 HATSLCWH-------PEEFVLAQGWEMG--VSDVQKTNTTETH--TVVETHPAP---IQGLDWSH-----DGTVLMTLDN  121 (1416)
T ss_pred             ehhhhccC-------hHHHHHhhccccc--eeEEEecCCceee--eeccCCCCC---ceeEEecC-----CCCeEEEcCC
Confidence            36679999       8888888877777  6788877655432  222467666   554 8999     7999999999


Q ss_pred             CCcEEEEEccc
Q psy3599         165 DSCVYFLDIQS  175 (223)
Q Consensus       165 dg~v~iwd~~~  175 (223)
                      -|.|.+|....
T Consensus       122 ~g~v~lwr~d~  132 (1416)
T KOG3617|consen  122 PGSVHLWRYDV  132 (1416)
T ss_pred             CceeEEEEeee
Confidence            99999998774

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.21  E-value=6  Score=32.92  Aligned_cols=114  Identities=18%  Similarity=0.105  Sum_probs=63.9

Q ss_pred             EEEEeecccccCCCCeEEEEE-eC--CCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCC
Q psy3599          89 CLSWRSWISREARDPTLLVNI-AA--NAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSED  165 (223)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~~-~~--~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~d  165 (223)
                      .+.++       |++++++.+ +.  +....++++|+.++..+...+. ....    -...|.+     ++..++....+
T Consensus       128 ~~~~S-------pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~----~~~~W~~-----d~~~~~y~~~~  190 (414)
T PF02897_consen  128 GFSVS-------PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKF----SSVSWSD-----DGKGFFYTRFD  190 (414)
T ss_dssp             EEEET-------TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEES----EEEEECT-----TSSEEEEEECS
T ss_pred             eeeEC-------CCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-cccc----ceEEEeC-----CCCEEEEEEeC
Confidence            46677       899988854 32  2245799999999977765433 1111    1135888     55555444332


Q ss_pred             C-----------cEEEEEcccCcccccceeeccccc--CEEEEEEecCCCEEEEEe-CC---CcEEEeeCCC
Q psy3599         166 S-----------CVYFLDIQSKEHKNAVNKLQGHAC--PVLGVSFNYDESLLATSD-YQ---GLIILWSREK  220 (223)
Q Consensus       166 g-----------~v~iwd~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~~l~s~s-~d---~~i~iwd~~~  220 (223)
                      .           .|+.|++.+.. .+-...+.....  ....+..++++.+++..+ ..   ..+.+-|+..
T Consensus       191 ~~~~~~~~~~~~~v~~~~~gt~~-~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  191 EDQRTSDSGYPRQVYRHKLGTPQ-SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             TTTSS-CCGCCEEEEEEETTS-G-GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             cccccccCCCCcEEEEEECCCCh-HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence            2           37788887611 221233333222  256788899988766543 22   3366667655

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.64  E-value=7.4  Score=32.97  Aligned_cols=106  Identities=10%  Similarity=0.094  Sum_probs=53.0

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS  163 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs  163 (223)
                      ......+.++       |++++++.++++.   +.++....... . .+  |..     ....|.+     ++. ++.-.
T Consensus        32 ~~~p~~ls~n-------pngr~v~V~g~ge---Y~iyt~~~~r~-k-~~--G~g-----~~~vw~~-----~n~-yAv~~   86 (443)
T PF04053_consen   32 EIYPQSLSHN-------PNGRFVLVCGDGE---YEIYTALAWRN-K-AF--GSG-----LSFVWSS-----RNR-YAVLE   86 (443)
T ss_dssp             SS--SEEEE--------TTSSEEEEEETTE---EEEEETTTTEE-E-EE--EE------SEEEE-T-----SSE-EEEE-
T ss_pred             CcCCeeEEEC-------CCCCEEEEEcCCE---EEEEEccCCcc-c-cc--Cce-----eEEEEec-----Ccc-EEEEE
Confidence            4567899999       9999999977766   55666333221 1 11  211     3335776     345 55555


Q ss_pred             CCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         164 EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       164 ~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ....|.++.--.   .+....++.. ..+..+-.   |.+|...+ ++.|.+||..+++
T Consensus        87 ~~~~I~I~kn~~---~~~~k~i~~~-~~~~~If~---G~LL~~~~-~~~i~~yDw~~~~  137 (443)
T PF04053_consen   87 SSSTIKIYKNFK---NEVVKSIKLP-FSVEKIFG---GNLLGVKS-SDFICFYDWETGK  137 (443)
T ss_dssp             TTS-EEEEETTE---E-TT-----S-S-EEEEE----SSSEEEEE-TTEEEEE-TTT--
T ss_pred             CCCeEEEEEcCc---cccceEEcCC-cccceEEc---CcEEEEEC-CCCEEEEEhhHcc
Confidence            578899863222   2333344421 22444432   77777776 4489999998764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=91.59  E-value=6.1  Score=31.70  Aligned_cols=135  Identities=18%  Similarity=0.169  Sum_probs=75.6

Q ss_pred             CcEEEEEECCC----CceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCce-EEeeeeec
Q psy3599          60 GVIVSILCDDL----GRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAV-QLKRKFNV  134 (223)
Q Consensus        60 ~~i~~~~~~~~----~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~-~~~~~~~~  134 (223)
                      |.|..+.+...    .++......  ...++|++++--        .+. |+.+..+   .+.+|++.... .....+. 
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~--~~~g~V~ai~~~--------~~~-lv~~~g~---~l~v~~l~~~~~l~~~~~~-  126 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHST--EVKGPVTAICSF--------NGR-LVVAVGN---KLYVYDLDNSKTLLKKAFY-  126 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEE--EESS-EEEEEEE--------TTE-EEEEETT---EEEEEEEETTSSEEEEEEE-
T ss_pred             cEEEEEEEEcccccceEEEEEEEE--eecCcceEhhhh--------CCE-EEEeecC---EEEEEEccCcccchhhhee-
Confidence            77777777663    233322222  227889999875        344 5554444   46677766555 3333221 


Q ss_pred             cccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccce-eecccccCEEEEEEecCCCEEEEEeCCCcE
Q psy3599         135 NHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVN-KLQGHACPVLGVSFNYDESLLATSDYQGLI  213 (223)
Q Consensus       135 ~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i  213 (223)
                      .....   +.+. ..     .+++++.|.....+.++..+..+ ..... .-......+.++.+-++++.++.+..+|.+
T Consensus       127 ~~~~~---i~sl-~~-----~~~~I~vgD~~~sv~~~~~~~~~-~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl  196 (321)
T PF03178_consen  127 DSPFY---ITSL-SV-----FKNYILVGDAMKSVSLLRYDEEN-NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL  196 (321)
T ss_dssp             -BSSS---EEEE-EE-----ETTEEEEEESSSSEEEEEEETTT-E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred             cceEE---EEEE-ec-----cccEEEEEEcccCEEEEEEEccC-CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence            11112   3332 22     26689999988888887655411 21211 112234568888888666789999999999


Q ss_pred             EEeeCC
Q psy3599         214 ILWSRE  219 (223)
Q Consensus       214 ~iwd~~  219 (223)
                      .++...
T Consensus       197 ~~l~~~  202 (321)
T PF03178_consen  197 FVLRYN  202 (321)
T ss_dssp             EEEEE-
T ss_pred             EEEEEC
Confidence            988765

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=91.29  E-value=5.4  Score=30.52  Aligned_cols=117  Identities=14%  Similarity=0.138  Sum_probs=68.0

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCe------EEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCc
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAV------CILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGA  157 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~------~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~  157 (223)
                      ....+++++.       ++|.+.++......      -.+-.++.. +. +....  ..-...  --.+|+|     +++
T Consensus        85 ~~~~ND~~vd-------~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~--~~~~~p--NGi~~s~-----dg~  146 (246)
T PF08450_consen   85 FNRPNDVAVD-------PDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVA--DGLGFP--NGIAFSP-----DGK  146 (246)
T ss_dssp             TEEEEEEEE--------TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEE--EEESSE--EEEEEET-----TSS
T ss_pred             cCCCceEEEc-------CCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEe--cCcccc--cceEECC-----cch
Confidence            4567789999       89998887664320      023333544 32 22121  111221  2236999     676


Q ss_pred             EE-EEecCCCcEEEEEcccCccc-----ccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         158 CV-VTGSEDSCVYFLDIQSKEHK-----NAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       158 ~l-~sgs~dg~v~iwd~~~~~~~-----~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      .| ++-+..+.|..+++.... .     +.+..+..-.+..-.+++..+|++.++.-..+.|.++|..
T Consensus       147 ~lyv~ds~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  147 TLYVADSFNGRIWRFDLDADG-GELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             EEEEEETTTTEEEEEEEETTT-CCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred             heeecccccceeEEEeccccc-cceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence            54 577778889999986411 1     1222223222236788999999988887778899999876

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.99  E-value=6.9  Score=31.24  Aligned_cols=34  Identities=15%  Similarity=0.294  Sum_probs=27.1

Q ss_pred             ccCEEEEEEecCCCEEEEEe-CCCcEEEeeCCCCC
Q psy3599         189 ACPVLGVSFNYDESLLATSD-YQGLIILWSREKHE  222 (223)
Q Consensus       189 ~~~v~~v~~~~~~~~l~s~s-~d~~i~iwd~~~~~  222 (223)
                      ...+-+|++++++..++..| -.+.+.+||..+++
T Consensus       216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~  250 (305)
T PF07433_consen  216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR  250 (305)
T ss_pred             CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence            35689999999988775555 67889999988865

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=90.87  E-value=5.9  Score=30.28  Aligned_cols=97  Identities=16%  Similarity=0.155  Sum_probs=57.2

Q ss_pred             EEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeee-cCcccCCCcEEEEecCCCc
Q psy3599          89 CLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFC-PIMSFREGACVVTGSEDSC  167 (223)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s-~~~~~~~~~~l~sgs~dg~  167 (223)
                      +..|.      +.++.++++-..++  .+..++..++.......  ..   .  ..+.+. +     ++.++++ ...+ 
T Consensus         4 gp~~d------~~~g~l~~~D~~~~--~i~~~~~~~~~~~~~~~--~~---~--~G~~~~~~-----~g~l~v~-~~~~-   61 (246)
T PF08450_consen    4 GPVWD------PRDGRLYWVDIPGG--RIYRVDPDTGEVEVIDL--PG---P--NGMAFDRP-----DGRLYVA-DSGG-   61 (246)
T ss_dssp             EEEEE------TTTTEEEEEETTTT--EEEEEETTTTEEEEEES--SS---E--EEEEEECT-----TSEEEEE-ETTC-
T ss_pred             ceEEE------CCCCEEEEEEcCCC--EEEEEECCCCeEEEEec--CC---C--ceEEEEcc-----CCEEEEE-EcCc-
Confidence            46677      23788888877777  67778888775443221  11   2  555566 4     5555554 4444 


Q ss_pred             EEEEEcccCcccc--cceeec--c-cccCEEEEEEecCCCEEEEEeCC
Q psy3599         168 VYFLDIQSKEHKN--AVNKLQ--G-HACPVLGVSFNYDESLLATSDYQ  210 (223)
Q Consensus       168 v~iwd~~~~~~~~--~~~~~~--~-h~~~v~~v~~~~~~~~l~s~s~d  210 (223)
                      +.++|..+   ++  .+....  . .....+.+++.|+|++.++....
T Consensus        62 ~~~~d~~~---g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~  106 (246)
T PF08450_consen   62 IAVVDPDT---GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGG  106 (246)
T ss_dssp             EEEEETTT---TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECC
T ss_pred             eEEEecCC---CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCC
Confidence            55568887   43  333332  1 33467899999999988776633

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=90.81  E-value=3.2  Score=34.94  Aligned_cols=116  Identities=20%  Similarity=0.249  Sum_probs=62.7

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEe-CCCe-EEEEEecCCCceEEee-eeeccccCcceeEEEeeecCcccCCCcEEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIA-ANAV-CILKVLDKEGAVQLKR-KFNVNHKSSKYQVRSTFCPIMSFREGACVV  160 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~-~~~~-~~v~i~d~~~~~~~~~-~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~  160 (223)
                      ...+..=+|+       +++..++..+ ..+- ..+.+++++++..... .+ .++...+     .|+|.    ...+++
T Consensus       192 ~~~~~~p~ws-------~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~-~g~~~~P-----~fspD----G~~l~f  254 (425)
T COG0823         192 GSLILTPAWS-------PDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF-NGNNGAP-----AFSPD----GSKLAF  254 (425)
T ss_pred             CcceeccccC-------cCCCceEEEEEecCCCceEEEEeccCCccceeecc-CCccCCc-----cCCCC----CCEEEE
Confidence            4455566777       7776655433 1111 1455667766543321 11 2443332     58994    244556


Q ss_pred             EecCCCc--EEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeC-CCc--EEEeeCCC
Q psy3599         161 TGSEDSC--VYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDY-QGL--IILWSREK  220 (223)
Q Consensus       161 sgs~dg~--v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-d~~--i~iwd~~~  220 (223)
                      +...||.  |++.|+..   +. +..+..-.+.-..-.|+|+|..++-.+. .|.  |.+.|+..
T Consensus       255 ~~~rdg~~~iy~~dl~~---~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g  315 (425)
T COG0823         255 SSSRDGSPDIYLMDLDG---KN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG  315 (425)
T ss_pred             EECCCCCccEEEEcCCC---Cc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC
Confidence            6666775  66667776   44 3334333333346789999998877763 344  44445443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=90.31  E-value=7.3  Score=30.41  Aligned_cols=114  Identities=14%  Similarity=0.055  Sum_probs=70.2

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCC
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSED  165 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~d  165 (223)
                      -...+.|.       .++.++-+++.-+-..++.+|+.+++.+.... .......  =-++..      ++.+..-.=.+
T Consensus        46 FTQGL~~~-------~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~-l~~~~Fg--EGit~~------~d~l~qLTWk~  109 (264)
T PF05096_consen   46 FTQGLEFL-------DDGTLYESTGLYGQSSLRKVDLETGKVLQSVP-LPPRYFG--EGITIL------GDKLYQLTWKE  109 (264)
T ss_dssp             EEEEEEEE-------ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE--TTT--E--EEEEEE------TTEEEEEESSS
T ss_pred             cCccEEec-------CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEE-CCccccc--eeEEEE------CCEEEEEEecC
Confidence            34568886       67888888887666688999999987664321 1221111  111122      35555556678


Q ss_pred             CcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         166 SCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       166 g~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      +...+||..+   .+.+..+.- ...-+.++  .++..|+.......+.++|..+.
T Consensus       110 ~~~f~yd~~t---l~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f  159 (264)
T PF05096_consen  110 GTGFVYDPNT---LKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETF  159 (264)
T ss_dssp             SEEEEEETTT---TEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-
T ss_pred             CeEEEEcccc---ceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCccc
Confidence            8999999998   777777652 34456665  46666777666778999997654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.69  E-value=1.9  Score=37.46  Aligned_cols=32  Identities=19%  Similarity=0.322  Sum_probs=24.5

Q ss_pred             CEEEEEEec----CCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         191 PVLGVSFNY----DESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       191 ~v~~v~~~~----~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+.+++.++    +..++++.+.|+.+|+||+.+++
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~  251 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQ  251 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTC
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCe
Confidence            455666666    67889999999999999999875

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=89.19  E-value=2.6  Score=32.81  Aligned_cols=61  Identities=18%  Similarity=0.327  Sum_probs=43.9

Q ss_pred             CCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         155 EGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       155 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      .++.|+.|+++| +++++....  .......+  ...|..+...|+-+.++.-+ |+.+.++++...
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~--~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l   66 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDP--SKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSL   66 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCC--ccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhh
Confidence            578899999999 899998330  23222222  33499999999878777765 699999998653

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PRK13616 lipoprotein LpqB; Provisional

Probab=89.09  E-value=9.6  Score=33.64  Aligned_cols=104  Identities=13%  Similarity=0.115  Sum_probs=56.9

Q ss_pred             CCeeEEEEeecccccCCCCeEEEEEe------CCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCc
Q psy3599          85 CPITCLSWRSWISREARDPTLLVNIA------ANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGA  157 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~~~~------~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~  157 (223)
                      ..+.+.+.+       ++|..++..-      .+.-..+.+.+.....  .... .+..     ... .|+|     ++.
T Consensus       350 ~~vsspaiS-------pdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt-~g~~-----~t~PsWsp-----DG~  409 (591)
T PRK13616        350 GNITSAALS-------RSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVL-EGHS-----LTRPSWSL-----DAD  409 (591)
T ss_pred             cCcccceEC-------CCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeee-cCCC-----CCCceECC-----CCC
Confidence            356788888       8888877544      2331133444432221  1111 1221     333 6888     666


Q ss_pred             EEEEecCC------------CcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEE
Q psy3599         158 CVVTGSED------------SCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIIL  215 (223)
Q Consensus       158 ~l~sgs~d------------g~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~i  215 (223)
                      .+.+.+..            +.+++.++..   ++...   .....|..+.|+|||..++... ++.|.+
T Consensus       410 ~lw~v~dg~~~~~v~~~~~~gql~~~~vd~---ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        410 AVWVVVDGNTVVRVIRDPATGQLARTPVDA---SAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             ceEEEecCcceEEEeccCCCceEEEEeccC---chhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            55554322            3343334444   33322   2345699999999999887765 466655

>KOG3621|consensus

Probab=88.29  E-value=1.6  Score=38.33  Aligned_cols=64  Identities=19%  Similarity=0.193  Sum_probs=49.7

Q ss_pred             CCcEEEEecCCCcEEEEEcccCcccccc-eeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         155 EGACVVTGSEDSCVYFLDIQSKEHKNAV-NKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       155 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      .+++++.|+.-|.+++|+...   ++.. .+..+-.+.+.....+++..++|.|+..|.|.++-+...
T Consensus        44 t~~~l~~GsS~G~lyl~~R~~---~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~  108 (726)
T KOG3621|consen   44 TEEYLAMGSSAGSVYLYNRHT---GEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE  108 (726)
T ss_pred             CCceEEEecccceEEEEecCc---hhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhcc
Confidence            689999999999999999887   5432 233334455667777899999999999999999877654

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=88.00  E-value=18  Score=31.71  Aligned_cols=121  Identities=11%  Similarity=0.097  Sum_probs=65.3

Q ss_pred             CCCeeEEEEeecccccCC-CCeEEEEEeCCCeEEEEEecCCC-----ceEEeeeeeccccCcce---eEEEeeecCcccC
Q psy3599          84 DCPITCLSWRSWISREAR-DPTLLVNIAANAVCILKVLDKEG-----AVQLKRKFNVNHKSSKY---QVRSTFCPIMSFR  154 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~v~i~d~~~-----~~~~~~~~~~~h~~~~~---~i~~~~s~~~~~~  154 (223)
                      -+.|..+.|.|.   ... ...+||.-....   |.+|.+..     ++.+.. . ..+-.+.+   .--|.|+|     
T Consensus        56 FEhV~GlsW~P~---~~~~~paLLAVQHkkh---VtVWqL~~s~~e~~K~l~s-Q-tcEi~e~~pvLpQGCVWHP-----  122 (671)
T PF15390_consen   56 FEHVHGLSWAPP---CTADTPALLAVQHKKH---VTVWQLCPSTTERNKLLMS-Q-TCEIREPFPVLPQGCVWHP-----  122 (671)
T ss_pred             cceeeeeeecCc---ccCCCCceEEEeccce---EEEEEeccCccccccceee-e-eeeccCCcccCCCcccccC-----
Confidence            456889999831   111 236777766554   66676541     111111 1 12222211   12346888     


Q ss_pred             CCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeC-CCcEEEeeCC
Q psy3599         155 EGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDY-QGLIILWSRE  219 (223)
Q Consensus       155 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-d~~i~iwd~~  219 (223)
                      ....|+.-.....--+++++. ++......++ -.+.|.|.+|.+||+.|+.+-. .=.-++||-.
T Consensus       123 k~~iL~VLT~~dvSV~~sV~~-d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  123 KKAILTVLTARDVSVLPSVHC-DSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             CCceEEEEecCceeEeeeeee-CCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            455555444333323566665 1123333444 3577999999999998777642 2335788854

>KOG2377|consensus

Probab=87.73  E-value=15  Score=31.09  Aligned_cols=130  Identities=7%  Similarity=0.070  Sum_probs=72.2

Q ss_pred             cccCCcEEEEEECCCCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeecc
Q psy3599          56 LRSTGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVN  135 (223)
Q Consensus        56 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~  135 (223)
                      ....|.+..+...+-+.-+.. .+.....++|.+|.|+       +|...||.--.+.  .+.+++....+...... ..
T Consensus        39 avrSggatgvvvkgpndDVpi-Sfdm~d~G~I~SIkFS-------lDnkilAVQR~~~--~v~f~nf~~d~~~l~~~-~~  107 (657)
T KOG2377|consen   39 AVRSGGATGVVVKGPNDDVPI-SFDMDDKGEIKSIKFS-------LDNKILAVQRTSK--TVDFCNFIPDNSQLEYT-QE  107 (657)
T ss_pred             EEecCCeeEEEEeCCCCCCCc-eeeecCCCceeEEEec-------cCcceEEEEecCc--eEEEEecCCCchhhHHH-HH
Confidence            344566666666663322222 2233336799999999       9999999877777  67777764332221111 23


Q ss_pred             ccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEE
Q psy3599         136 HKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLA  205 (223)
Q Consensus       136 h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~  205 (223)
                      |......+.. +|+.      ..-++--+..| +-+|.+..-  ...+...+.|+-.|.=..|+++-+.+.
T Consensus       108 ck~k~~~IlGF~W~~------s~e~A~i~~~G-~e~y~v~pe--krslRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  108 CKTKNANILGFCWTS------STEIAFITDQG-IEFYQVLPE--KRSLRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             hccCcceeEEEEEec------CeeEEEEecCC-eEEEEEchh--hhhhhhhhhcccCccEEEEccccceEe
Confidence            3322211444 6765      33344444444 555554431  234556666777777778888766433

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=87.06  E-value=3.4  Score=22.44  Aligned_cols=32  Identities=13%  Similarity=0.291  Sum_probs=24.3

Q ss_pred             CCeeEEEEeecccccCCCC--eEEEEEeCCCeEEEEEecCCC
Q psy3599          85 CPITCLSWRSWISREARDP--TLLVNIAANAVCILKVLDKEG  124 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~--~~l~~~~~~~~~~v~i~d~~~  124 (223)
                      +.|.+++|+|      ..+  ++|+.+-..+  .+.++|..+
T Consensus         1 GAvR~~kFsP------~~~~~DLL~~~E~~g--~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSP------EPGGNDLLAWAEHQG--RVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCC------CCCcccEEEEEccCC--eEEEEEccc
Confidence            3688999992      344  6888887777  789999874

It contains a characteristic DLL sequence motif.

>PRK02888 nitrous-oxide reductase; Validated

Probab=86.31  E-value=12  Score=32.97  Aligned_cols=74  Identities=12%  Similarity=0.074  Sum_probs=50.6

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEe-CCCeEEEEEecCCCceE-----------EeeeeeccccCcceeEEEeeecCc
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIA-ANAVCILKVLDKEGAVQ-----------LKRKFNVNHKSSKYQVRSTFCPIM  151 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~v~i~d~~~~~~-----------~~~~~~~~h~~~~~~i~~~~s~~~  151 (223)
                      +.....+.++       |||.++++++ .+.  .+.+.|+.+...           +......|  ..  ++...|.+  
T Consensus       320 GKsPHGV~vS-------PDGkylyVanklS~--tVSVIDv~k~k~~~~~~~~~~~~vvaevevG--lG--PLHTaFDg--  384 (635)
T PRK02888        320 PKNPHGVNTS-------PDGKYFIANGKLSP--TVTVIDVRKLDDLFDGKIKPRDAVVAEPELG--LG--PLHTAFDG--  384 (635)
T ss_pred             CCCccceEEC-------CCCCEEEEeCCCCC--cEEEEEChhhhhhhhccCCccceEEEeeccC--CC--cceEEECC--
Confidence            5566778888       9999988766 455  688888876432           11111111  11  26667887  


Q ss_pred             ccCCCcEEEEecCCCcEEEEEccc
Q psy3599         152 SFREGACVVTGSEDSCVYFLDIQS  175 (223)
Q Consensus       152 ~~~~~~~l~sgs~dg~v~iwd~~~  175 (223)
                         +|+.+.|-..|..|..||+..
T Consensus       385 ---~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        385 ---RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ---CCCEEEeEeecceeEEEehHH
Confidence               688888888899999999876

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=84.95  E-value=15  Score=30.83  Aligned_cols=41  Identities=20%  Similarity=0.276  Sum_probs=33.3

Q ss_pred             CCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEec
Q psy3599         155 EGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNY  199 (223)
Q Consensus       155 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~  199 (223)
                      |...++.|..+|.|++|...    +.++..-.-|..+|..+.+..
T Consensus        78 dw~~I~VG~ssG~vrfyte~----G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   78 DWTCIAVGTSSGYVRFYTEN----GVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             CcEEEEEEecccEEEEEecc----chHHHHHhcCccceEEEEecc
Confidence            56899999999999999874    566666666889999888754

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=84.44  E-value=16  Score=31.45  Aligned_cols=61  Identities=13%  Similarity=0.170  Sum_probs=46.4

Q ss_pred             CCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         155 EGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       155 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      ...+++.||..|-|++||.-.   ...-..+.+-...|-.+..+.+|..++..+ ...+.+-|++
T Consensus       572 esGyIa~as~kGDirLyDRig---~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~  632 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIG---KRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP  632 (776)
T ss_pred             cCceEEEecCCCceeeehhhc---chhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence            567999999999999999765   444455666677888899899988766655 4567776764

>KOG1916|consensus

Probab=83.69  E-value=0.74  Score=41.63  Aligned_cols=60  Identities=15%  Similarity=0.202  Sum_probs=42.6

Q ss_pred             CCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEE-----------EEecCCCEEEEEeCCCcEEEeeC
Q psy3599         155 EGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGV-----------SFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       155 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v-----------~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      +..++..+-.++.+++....+   .. ...+.+|...+..+           ..+|||..|+.++.||.+++|.+
T Consensus       194 ~~~~ic~~~~~~~i~lL~~~r---a~-~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  194 NKVYICYGLKGGEIRLLNINR---AL-RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             ccceeeeccCCCceeEeeech---HH-HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            457788888888888776665   22 23344466554443           25899999999999999998865

>KOG3630|consensus

Probab=83.04  E-value=6.8  Score=36.76  Aligned_cols=69  Identities=9%  Similarity=0.086  Sum_probs=48.9

Q ss_pred             EEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeC
Q psy3599         143 VRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       143 i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      +...|+|.    -....+....|+.|++..+...  ...+.++. -...++|++|+|.|..++.|-..|++.-|..
T Consensus       159 ~~~~wnP~----vp~n~av~l~dlsl~V~~~~~~--~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P  227 (1405)
T KOG3630|consen  159 LKNVWNPL----VPLNSAVDLSDLSLRVKSTKQL--AQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP  227 (1405)
T ss_pred             ccccccCC----ccchhhhhccccchhhhhhhhh--hhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeec
Confidence            33468885    3555666778888888776641  22233433 3446899999999999999999999887753

>KOG1916|consensus

Probab=82.70  E-value=3.2  Score=37.88  Aligned_cols=122  Identities=16%  Similarity=0.235  Sum_probs=68.3

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCccee--------EEE-eeecCcccC
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQ--------VRS-TFCPIMSFR  154 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~--------i~~-~~s~~~~~~  154 (223)
                      +..+.-+.|.|.    .++.-++..+-+++  .+++...+...  ...|. +|...+..        +.. ..+|     
T Consensus       180 gs~~~~V~wcp~----~~~~~~ic~~~~~~--~i~lL~~~ra~--~~l~r-sHs~~~~d~a~~~~g~~~l~~lSp-----  245 (1283)
T KOG1916|consen  180 GSDPQLVSWCPI----AVNKVYICYGLKGG--EIRLLNINRAL--RSLFR-SHSQRVTDMAFFAEGVLKLASLSP-----  245 (1283)
T ss_pred             CCCcceeeeccc----ccccceeeeccCCC--ceeEeeechHH--HHHHH-hcCCCcccHHHHhhchhhheeeCC-----
Confidence            445566777632    14445565655666  45544433221  13343 56654310        222 4678     


Q ss_pred             CCcEEEEecCCCcEEEEEcccCc--ccccceeeccccc-CEEEEEEecCCC---------EEEEEe-CCCcEEEeeCC
Q psy3599         155 EGACVVTGSEDSCVYFLDIQSKE--HKNAVNKLQGHAC-PVLGVSFNYDES---------LLATSD-YQGLIILWSRE  219 (223)
Q Consensus       155 ~~~~l~sgs~dg~v~iwd~~~~~--~~~~~~~~~~h~~-~v~~v~~~~~~~---------~l~s~s-~d~~i~iwd~~  219 (223)
                      ||..++..+.||.++.|.+.-.+  +..|+..++.|.. +-.|.-|+.+..         ++++++ .+..+++|...
T Consensus       246 DGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a  323 (1283)
T KOG1916|consen  246 DGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEA  323 (1283)
T ss_pred             CCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeecc
Confidence            89999999999999888764211  1467888888873 333333443221         344544 45668888743

>KOG4499|consensus

Probab=82.43  E-value=21  Score=27.60  Aligned_cols=41  Identities=15%  Similarity=0.139  Sum_probs=36.1

Q ss_pred             CCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEe
Q psy3599         155 EGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFN  198 (223)
Q Consensus       155 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~  198 (223)
                      +|++.++.-..++|...|..+   ++.+..++-....|++++|-
T Consensus       222 eG~L~Va~~ng~~V~~~dp~t---GK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  222 EGNLYVATFNGGTVQKVDPTT---GKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             CCcEEEEEecCcEEEEECCCC---CcEEEEEEcCCCceEEEEec
Confidence            577888888888999999999   99999998888899999995

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=82.09  E-value=31  Score=29.60  Aligned_cols=73  Identities=16%  Similarity=0.147  Sum_probs=37.9

Q ss_pred             eEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec---------CCCcEEEEEcc
Q psy3599         104 TLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS---------EDSCVYFLDIQ  174 (223)
Q Consensus       104 ~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs---------~dg~v~iwd~~  174 (223)
                      ..++.++.++  .+.-+|.++++.+...-...+....+.+.  -+|..   .+..++.++         .+|.++.+|..
T Consensus       111 ~~V~v~~~~g--~v~AlD~~TG~~~W~~~~~~~~~~~~~i~--ssP~v---~~~~v~vg~~~~~~~~~~~~g~v~alD~~  183 (488)
T cd00216         111 RKVFFGTFDG--RLVALDAETGKQVWKFGNNDQVPPGYTMT--GAPTI---VKKLVIIGSSGAEFFACGVRGALRAYDVE  183 (488)
T ss_pred             CeEEEecCCC--eEEEEECCCCCEeeeecCCCCcCcceEec--CCCEE---ECCEEEEeccccccccCCCCcEEEEEECC
Confidence            4555555566  56677888887766432111110110011  12211   234455554         36788888988


Q ss_pred             cCcccccceeec
Q psy3599         175 SKEHKNAVNKLQ  186 (223)
Q Consensus       175 ~~~~~~~~~~~~  186 (223)
                      +   ++.+-.++
T Consensus       184 T---G~~~W~~~  192 (488)
T cd00216         184 T---GKLLWRFY  192 (488)
T ss_pred             C---CceeeEee
Confidence            8   77665553

The alignment model contains an 8-bladed beta-propeller.

>PHA02713 hypothetical protein; Provisional

Probab=81.67  E-value=17  Score=31.80  Aligned_cols=66  Identities=9%  Similarity=0.166  Sum_probs=39.2

Q ss_pred             CCcEEEEecCCC------cEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCC--cEEEeeCCCCC
Q psy3599         155 EGACVVTGSEDS------CVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSREKHE  222 (223)
Q Consensus       155 ~~~~l~sgs~dg------~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~--~i~iwd~~~~~  222 (223)
                      ++.+.+.|+.++      .+..||..+...-+.+..+.........+.+  ++.+.++||.++  ++-.||+.+.+
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence            577777777542      3667887750012334444433333333333  778889999888  67788877653

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=81.63  E-value=30  Score=28.93  Aligned_cols=62  Identities=15%  Similarity=0.237  Sum_probs=43.4

Q ss_pred             CCcEEEEecCCCcEEEEEcccCcccccceee--c------ccccCEEEEEEec-----CC---CEEEEEeCCCcEEEeeC
Q psy3599         155 EGACVVTGSEDSCVYFLDIQSKEHKNAVNKL--Q------GHACPVLGVSFNY-----DE---SLLATSDYQGLIILWSR  218 (223)
Q Consensus       155 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~--~------~h~~~v~~v~~~~-----~~---~~l~s~s~d~~i~iwd~  218 (223)
                      +-.+++.|.++|.+.|.|++.   ...++.-  .      .....++++.|.-     |+   -++.+|...|.+.+|.+
T Consensus        96 ~iGFvaigy~~G~l~viD~RG---PavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkI  172 (395)
T PF08596_consen   96 DIGFVAIGYESGSLVVIDLRG---PAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKI  172 (395)
T ss_dssp             BTSEEEEEETTSEEEEEETTT---TEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             CCcEEEEEecCCcEEEEECCC---CeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEE
Confidence            467899999999999999987   5544431  1      1234678888863     22   36888888899999976


Q ss_pred             C
Q psy3599         219 E  219 (223)
Q Consensus       219 ~  219 (223)
                      -
T Consensus       173 l  173 (395)
T PF08596_consen  173 L  173 (395)
T ss_dssp             E
T ss_pred             e
Confidence            4

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=81.61  E-value=4  Score=33.28  Aligned_cols=51  Identities=14%  Similarity=0.136  Sum_probs=36.7

Q ss_pred             CcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         166 SCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       166 g~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      +.+.++|+.+   ++.. .+......+....|+|+|+.++... ++.|.+++..++
T Consensus        23 ~~y~i~d~~~---~~~~-~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~   73 (353)
T PF00930_consen   23 GDYYIYDIET---GEIT-PLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG   73 (353)
T ss_dssp             EEEEEEETTT---TEEE-ESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS
T ss_pred             eeEEEEecCC---CceE-ECcCCccccccceeecCCCeeEEEe-cCceEEEECCCC
Confidence            4688999998   5432 2322256688899999999999886 678999987654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=81.27  E-value=30  Score=28.67  Aligned_cols=104  Identities=14%  Similarity=0.195  Sum_probs=65.1

Q ss_pred             CCCe-EEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecC---CCcEEEEEcccC
Q psy3599         101 RDPT-LLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE---DSCVYFLDIQSK  176 (223)
Q Consensus       101 ~~~~-~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~---dg~v~iwd~~~~  176 (223)
                      +.+. ..+...++.  .+.+.|..+........ .+.  .+  ....++|     ++..+..+..   ++.+.+.|..+ 
T Consensus        83 ~~~~~vyv~~~~~~--~v~vid~~~~~~~~~~~-vG~--~P--~~~~~~~-----~~~~vYV~n~~~~~~~vsvid~~t-  149 (381)
T COG3391          83 PAGNKVYVTTGDSN--TVSVIDTATNTVLGSIP-VGL--GP--VGLAVDP-----DGKYVYVANAGNGNNTVSVIDAAT-  149 (381)
T ss_pred             CCCCeEEEecCCCC--eEEEEcCcccceeeEee-ecc--CC--ceEEECC-----CCCEEEEEecccCCceEEEEeCCC-
Confidence            5555 455554545  57777766655444332 244  22  3446788     4544444443   68888888887 


Q ss_pred             cccccceeecccccCEEEEEEecCCCEEEEEe-CCCcEEEeeCCC
Q psy3599         177 EHKNAVNKLQGHACPVLGVSFNYDESLLATSD-YQGLIILWSREK  220 (223)
Q Consensus       177 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s-~d~~i~iwd~~~  220 (223)
                        ...+.+...-..+ ..++++|+|..+..+. .++.|.+.|...
T Consensus       150 --~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~  191 (381)
T COG3391         150 --NKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG  191 (381)
T ss_pred             --CeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC
Confidence              6666665443334 7899999999665554 788899988654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	223
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-05
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-05
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-05
2h9l_A	329	Wdr5delta23 Length = 329		5e-05
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-05
2g99_A	308	Structural Basis For The Specific Recognition Of Me		5e-05
2gnq_A	336	Structure Of Wdr5 Length = 336		5e-05
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		5e-05
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-05
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-05
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-05
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		6e-05
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-05
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		6e-05
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		8e-05
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		8e-05

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
           +AA     LK+ D      LK      HK+ KY + + F    S   G  +V+GSED+ V
Sbjct: 208 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 261
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
           Y  ++Q+KE    V KLQGH   V+  + +  E+++A++  +    I LW  +
Sbjct: 262 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
           +AA     LK+ D      LK      HK+ KY + + F    S   G  +V+GSED+ V
Sbjct: 230 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 283
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
           Y  ++Q+KE    V KLQGH   V+  + +  E+++A++  +    I LW  +
Sbjct: 284 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
           +AA     LK+ D      LK      HK+ KY + + F    S   G  +V+GSED+ V
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNMV 264
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
           Y  ++Q+KE    V KLQGH   V+  + +  E+++A++  +    I LW  +
Sbjct: 265 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
           +AA     LK+ D      LK      HK+ KY + + F    S   G  +V+GSED+ V
Sbjct: 225 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 278
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
           Y  ++Q+KE    V KLQGH   V+  + +  E+++A++  +    I LW  +
Sbjct: 279 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 328

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
           +AA     LK+ D      LK      HK+ KY + + F    S   G  +V+GSED+ V
Sbjct: 208 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 261
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
           Y  ++Q+KE    V KLQGH   V+  + +  E+++A++  +    I LW  +
Sbjct: 262 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
           +AA     LK+ D      LK      HK+ KY + + F    S   G  +V+GSED+ V
Sbjct: 204 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 257
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
           Y  ++Q+KE    V KLQGH   V+  + +  E+++A++  +    I LW  +
Sbjct: 258 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 307

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
           +AA     LK+ D      LK      HK+ KY + + F    S   G  +V+GSED+ V
Sbjct: 232 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 285
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
           Y  ++Q+KE    V KLQGH   V+  + +  E+++A++  +    I LW  +
Sbjct: 286 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
           +AA     LK+ D      LK      HK+ KY + + F    S   G  +V+GSED+ V
Sbjct: 209 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 262
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
           Y  ++Q+KE    V KLQGH   V+  + +  E+++A++  +    I LW  +
Sbjct: 263 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 312

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
           +AA     LK+ D      LK      HK+ KY + + F    S   G  +V+GSED+ V
Sbjct: 207 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 260
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
           Y  ++Q+KE    V KLQGH   V+  + +  E+++A++  +    I LW  +
Sbjct: 261 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 310

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
           +AA     LK+ D      LK      HK+ KY + + F    S   G  +V+GSED+ V
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 267
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
           Y  ++Q+KE    V KLQGH   V+  + +  E+++A++  +    I LW  +
Sbjct: 268 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
           +AA     LK+ D      LK      HK+ KY + + F    S   G  +V+GSED+ V
Sbjct: 213 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 266
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
           Y  ++Q+KE    V KLQGH   V+  + +  E+++A++  +    I LW  +
Sbjct: 267 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 316

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
           +AA     LK+ D      LK      HK+ KY + + F    S   G  +V+GSED+ V
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 267
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
           Y  ++Q+KE    V KLQGH   V+  + +  E+++A++  +    I LW  +
Sbjct: 268 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 131 KFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHAC 190
           K    HK+ KY + + F    S   G  +V+GSED+ VY  ++Q+KE    V KLQGH  
Sbjct: 231 KTYTGHKNEKYCIFANF----SVTGGKWIVSGSEDNMVYIWNLQTKE---IVQKLQGHTD 283
Query: 191 PVLGVSFNYDESLLATSDYQG--LIILWSRE 219
            V+  + +  E+++A++  +    I LW  +
Sbjct: 284 VVISTACHPTENIIASAALENDKTIKLWKSD 314

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
           +AA     LK+ D      LK      HK+ KY + + F    S   G  +V+GSED+ V
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 267
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
           Y  ++Q+KE    V KLQGH   V+  + +  E+++A++  +    I LW  +
Sbjct: 268 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
           +AA     LK+ D      LK      HK+ KY + + F    S   G  +V+GSED+ V
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 264
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
           Y  ++Q+KE    V KLQGH   V+  + +  E+++A++  +    I LW  +
Sbjct: 265 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
           +AA     LK+ D      LK      HK+ KY + + F    S   G  +V+GSED+ V
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 264
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATS 207
           Y  ++Q+KE    V KLQGH   V+  + +  E+++A++
Sbjct: 265 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASA 300

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
           +AA     LK+ D      LK      HK+ KY + + F    S   G  +V+GSED+ V
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 264
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATS 207
           Y  ++Q+KE    V KLQGH   V+  + +  E+++A++
Sbjct: 265 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASA 300

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.91
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.9
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.89
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.89
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.89
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.88
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.88
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.88
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.88
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.88
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.87
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.87
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.87
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.86
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.86
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.86
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.86
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.86
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.86
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.86
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.86
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.85
2pm7_B	297	Protein transport protein SEC13, protein transport	99.84
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.84
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.84
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.84
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.84
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.84
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.84
2pm7_B	297	Protein transport protein SEC13, protein transport	99.84
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.84
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.84
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.83
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.83
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.83
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.82
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.82
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.82
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.82
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.81
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.81
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.81
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.81
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.81
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.8
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.8
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.8
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.8
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.8
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.8
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.8
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.8
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.8
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.8
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.79
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.79
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.79
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.79
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.79
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.79
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.79
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.79
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.78
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.78
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.78
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.78
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.78
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.77
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.77
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.77
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.77
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.77
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.77
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.77
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.77
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.76
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.76
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.76
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.75
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.75
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.75
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.75
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.75
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.75
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.74
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.74
3jro_A	753	Fusion protein of protein transport protein SEC13	99.74
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.74
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.74
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.74
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.74
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.74
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.74
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.74
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.73
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.73
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.73
3jro_A	753	Fusion protein of protein transport protein SEC13	99.73
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.72
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.72
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.72
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.72
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.71
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.71
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.71
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.71
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.71
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.7
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.7
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.7
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.69
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.69
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.69
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.69
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.68
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.67
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.65
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.64
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.64
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.63
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.63
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.63
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.58
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.55
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.51
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.49
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.46
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.45
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.43
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.4
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.27
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.2
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.12
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.12
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.12
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.11
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.1
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.09
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.08
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.08
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.07
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.06
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.05
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.04
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.04
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.02
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.0
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.99
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.98
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.96
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.95
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.94
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.93
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.92
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.84
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.82
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.79
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.72
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.72
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.72
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.72
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.69
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.65
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.63
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.6
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.57
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.56
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.54
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.53
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.51
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.5
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.49
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.41
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.37
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.36
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.34
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.32
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.27
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.25
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.24
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.19
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.19
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.17
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.16
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.14
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.13
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.12
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.1
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.04
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.98
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	97.96
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.96
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.91
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.9
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.89
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.85
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.81
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.81
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.8
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.79
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.79
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.75
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.74
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.7
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.65
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.61
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.6
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.56
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.48
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.45
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.39
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.31
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.27
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.16
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.15
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.14
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.1
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.1
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.06
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.03
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.03
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	96.89
2qe8_A	343	Uncharacterized protein; structural genomics, join	96.64
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.53
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	96.5
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.46
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.46
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.4
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.35
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.31
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.29
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	96.29
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.27
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.27
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.01
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.83
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	95.74
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	95.67
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	95.6
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	95.58
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	95.4
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	95.39
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	95.2
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.06
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	94.7
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	94.65
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	94.09
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	93.93
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	93.78
4a2l_A	795	BT_4663, two-component system sensor histidine kin	92.76
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	92.67
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	92.39
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	92.34
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	92.31
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	91.72
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	91.54
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	90.42
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	89.56
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	89.54
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	89.47
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	89.19
2p4o_A	306	Hypothetical protein; putative lactonase, structur	88.48
4a2l_A	795	BT_4663, two-component system sensor histidine kin	88.01
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	87.71
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	87.06
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	86.32
2p4o_A	306	Hypothetical protein; putative lactonase, structur	86.06
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	85.56
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	83.89
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	83.57
3v9f_A	781	Two-component system sensor histidine kinase/RESP	82.84
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	82.65
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	82.22
3kya_A	496	Putative phosphatase; structural genomics, joint c	81.56

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.91  E-value=9.3e-23  Score=160.57  Aligned_cols=148  Identities=16%  Similarity=0.256  Sum_probs=125.5

Q ss_pred             cccccccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCC
Q psy3599          52 RNDQLRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANA  113 (223)
Q Consensus        52 ~~~~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~  113 (223)
                      ...+.+|.+.|.+++|+|+++++.+.                  .+..| ..+|.+++|+       +++.+|++++.|+
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~-~~~v~~~~~~-------~~~~~l~s~s~d~   77 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVT-ETPVRAGKFI-------ARKNWIIVGSDDF   77 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEEE-------GGGTEEEEEETTS
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeecc-CCcEEEEEEe-------CCCCEEEEECCCC
Confidence            34456788999999999988876543                  23345 7899999999       9999999999999


Q ss_pred             eEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCccc-ccceeecccccC
Q psy3599         114 VCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHK-NAVNKLQGHACP  191 (223)
Q Consensus       114 ~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~h~~~  191 (223)
                        .+++||..++..+.. + .+|...   +.+ +|+|     ++.++++|+.|+.|++||+++   + .+...+.+|...
T Consensus        78 --~i~vwd~~~~~~~~~-~-~~h~~~---v~~~~~~~-----~~~~l~sgs~D~~v~lWd~~~---~~~~~~~~~~h~~~  142 (304)
T 2ynn_A           78 --RIRVFNYNTGEKVVD-F-EAHPDY---IRSIAVHP-----TKPYVLSGSDDLTVKLWNWEN---NWALEQTFEGHEHF  142 (304)
T ss_dssp             --EEEEEETTTCCEEEE-E-ECCSSC---EEEEEECS-----SSSEEEEEETTSCEEEEEGGG---TTEEEEEECCCCSC
T ss_pred             --EEEEEECCCCcEEEE-E-eCCCCc---EEEEEEcC-----CCCEEEEECCCCeEEEEECCC---CcchhhhhcccCCc
Confidence              999999998877664 4 489888   555 8999     799999999999999999988   5 456778899999


Q ss_pred             EEEEEEec-CCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         192 VLGVSFNY-DESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       192 v~~v~~~~-~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      |.+++|+| ++..|++|+.|++|++||+++++
T Consensus       143 v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~  174 (304)
T 2ynn_A          143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQST  174 (304)
T ss_dssp             EEEEEECTTCTTEEEEEETTSEEEEEETTCSS
T ss_pred             EEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence            99999999 57899999999999999997654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.90  E-value=2.8e-22  Score=160.78  Aligned_cols=146  Identities=14%  Similarity=0.164  Sum_probs=118.5

Q ss_pred             ccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCC-eEEEEEeCCCeEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDP-TLLVNIAANAVCIL  117 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~v  117 (223)
                      +|.+.|.+++|+|+|+++.+.                  .+..| ...|.+++|+       +++ .+|++++.|+  .+
T Consensus       125 ~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h-~~~V~~~~~~-------~~~~~~l~s~s~D~--~v  194 (344)
T 4gqb_B          125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH-AAQVTCVAAS-------PHKDSVFLSCSEDN--RI  194 (344)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEC-------SSCTTEEEEEETTS--CE
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc-CCceEEEEec-------CCCCCceeeecccc--cc
Confidence            688999999999998877554                  34456 8899999999       665 5789999999  89


Q ss_pred             EEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEE
Q psy3599         118 KVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVS  196 (223)
Q Consensus       118 ~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~  196 (223)
                      ++||+.+++.+.......|...   +.+ +|+|.    ++.++++|+.||.|++||+++   ++++..+.+|...|++++
T Consensus       195 ~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~p~----~~~~l~sg~~dg~v~~wd~~~---~~~~~~~~~h~~~v~~v~  264 (344)
T 4gqb_B          195 LLWDTRCPKPASQIGCSAPGYL---PTSLAWHPQ----QSEVFVFGDENGTVSLVDTKS---TSCVLSSAVHSQCVTGLV  264 (344)
T ss_dssp             EEEETTSSSCEEECC----CCC---EEEEEECSS----CTTEEEEEETTSEEEEEESCC-----CCEEEECCSSCEEEEE
T ss_pred             ccccccccceeeeeecceeecc---ceeeeecCC----CCcceEEeccCCcEEEEECCC---CcEEEEEcCCCCCEEEEE
Confidence            9999998876654322233333   444 88885    578999999999999999999   899999999999999999


Q ss_pred             EecCC-CEEEEEeCCCcEEEeeCCCCC
Q psy3599         197 FNYDE-SLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       197 ~~~~~-~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      |+|++ .+|++|+.|++|+|||+++++
T Consensus       265 fsp~g~~~lasgs~D~~i~vwd~~~~~  291 (344)
T 4gqb_B          265 FSPHSVPFLASLSEDCSLAVLDSSLSE  291 (344)
T ss_dssp             ECSSSSCCEEEEETTSCEEEECTTCCE
T ss_pred             EccCCCeEEEEEeCCCeEEEEECCCCc
Confidence            99997 579999999999999998764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.89  E-value=1e-21  Score=155.99  Aligned_cols=140  Identities=24%  Similarity=0.347  Sum_probs=121.3

Q ss_pred             ccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK  118 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~  118 (223)
                      .+...|.++.|+|+|+++.+.                  .+..| ..+|.+++|+       |++.+|++++.|+  .++
T Consensus       162 ~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~s-------pd~~~l~s~s~dg--~i~  231 (321)
T 3ow8_A          162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH-AMPIRSLTFS-------PDSQLLVTASDDG--YIK  231 (321)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCCCEEEEC-------TTSCEEEEECTTS--CEE
T ss_pred             CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc-CCceeEEEEc-------CCCCEEEEEcCCC--eEE
Confidence            456678889999988876543                  23445 7899999999       9999999999999  899


Q ss_pred             EecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEE
Q psy3599         119 VLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSF  197 (223)
Q Consensus       119 i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~  197 (223)
                      +||..++..+.. + .+|...   +.+ +|+|     ++.+|++|+.|+.|++||+.+   ++++..+.+|...|.+++|
T Consensus       232 iwd~~~~~~~~~-~-~~h~~~---v~~~~~sp-----~~~~l~s~s~D~~v~iwd~~~---~~~~~~~~~h~~~v~~v~~  298 (321)
T 3ow8_A          232 IYDVQHANLAGT-L-SGHASW---VLNVAFCP-----DDTHFVSSSSDKSVKVWDVGT---RTCVHTFFDHQDQVWGVKY  298 (321)
T ss_dssp             EEETTTCCEEEE-E-CCCSSC---EEEEEECT-----TSSEEEEEETTSCEEEEETTT---TEEEEEECCCSSCEEEEEE
T ss_pred             EEECCCcceeEE-E-cCCCCc---eEEEEECC-----CCCEEEEEeCCCcEEEEeCCC---CEEEEEEcCCCCcEEEEEE
Confidence            999988766553 4 488888   555 8999     799999999999999999999   8999999999999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEeeCC
Q psy3599         198 NYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       198 ~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      +|++..|++++.|+.|++||+.
T Consensus       299 s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          299 NGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             CTTSSEEEEEETTCCEEEEECC
T ss_pred             CCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999999999999963

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.89  E-value=2.4e-21  Score=152.52  Aligned_cols=147  Identities=27%  Similarity=0.416  Sum_probs=127.0

Q ss_pred             ccccccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCe
Q psy3599          53 NDQLRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAV  114 (223)
Q Consensus        53 ~~~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~  114 (223)
                      ..+.+|.+.|.++.|+|+++++.+.                  .+..| ...|.+++|+       +++.+|++++.++ 
T Consensus        17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h-~~~v~~~~~~-------~~~~~l~s~~~d~-   87 (312)
T 4ery_A           17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWS-------SDSNLLVSASDDK-   87 (312)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEEC-------TTSSEEEEEETTS-
T ss_pred             EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccC-CCceEEEEEc-------CCCCEEEEECCCC-
Confidence            3344788999999999988776543                  23345 7889999999       9999999999999 


Q ss_pred             EEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEE
Q psy3599         115 CILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVL  193 (223)
Q Consensus       115 ~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~  193 (223)
                       .+++||..++..+.. + .+|...   +.+ .|+|     ++.++++|+.|+.|++||+++   ++++..+..|...|.
T Consensus        88 -~i~vwd~~~~~~~~~-~-~~~~~~---v~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~v~  153 (312)
T 4ery_A           88 -TLKIWDVSSGKCLKT-L-KGHSNY---VFCCNFNP-----QSNLIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVS  153 (312)
T ss_dssp             -EEEEEETTTCCEEEE-E-ECCSSC---EEEEEECS-----SSSEEEEEETTSCEEEEETTT---CCEEEEECCCSSCEE
T ss_pred             -EEEEEECCCCcEEEE-E-cCCCCC---EEEEEEcC-----CCCEEEEEeCCCcEEEEECCC---CEEEEEecCCCCcEE
Confidence             999999998876654 3 488877   555 8999     799999999999999999999   888999999999999


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         194 GVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       194 ~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ++.|+|++.+|++++.|+.|++||+++++
T Consensus       154 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~  182 (312)
T 4ery_A          154 AVHFNRDGSLIVSSSYDGLCRIWDTASGQ  182 (312)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence            99999999999999999999999998764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.89  E-value=9.8e-22  Score=161.01  Aligned_cols=146  Identities=19%  Similarity=0.277  Sum_probs=127.9

Q ss_pred             cccccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeE
Q psy3599          54 DQLRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVC  115 (223)
Q Consensus        54 ~~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~  115 (223)
                      .+.+|.+.|.++.|+|++.++.+.                  .+..| ...|.+++|+       +++.+|++++.|+  
T Consensus       103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h-~~~V~~v~~~-------~~~~~l~sgs~D~--  172 (410)
T 1vyh_C          103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH-TDSVQDISFD-------HSGKLLASCSADM--  172 (410)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCC-SSCEEEEEEC-------TTSSEEEEEETTS--
T ss_pred             eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEecc-CCcEEEEEEc-------CCCCEEEEEeCCC--
Confidence            344899999999999988776543                  34456 7899999999       9999999999999  


Q ss_pred             EEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEE
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLG  194 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~  194 (223)
                      .+++||..++..+.. + .+|...   +.+ .|+|     ++.++++|+.|+.|++||+++   +.++..+.+|...|.+
T Consensus       173 ~i~iwd~~~~~~~~~-~-~~h~~~---V~~v~~~p-----~~~~l~s~s~D~~i~~wd~~~---~~~~~~~~~h~~~v~~  239 (410)
T 1vyh_C          173 TIKLWDFQGFECIRT-M-HGHDHN---VSSVSIMP-----NGDHIVSASRDKTIKMWEVQT---GYCVKTFTGHREWVRM  239 (410)
T ss_dssp             CCCEEETTSSCEEEC-C-CCCSSC---EEEEEECS-----SSSEEEEEETTSEEEEEETTT---CCEEEEEECCSSCEEE
T ss_pred             eEEEEeCCCCceeEE-E-cCCCCC---EEEEEEeC-----CCCEEEEEeCCCeEEEEECCC---CcEEEEEeCCCccEEE
Confidence            899999998876654 3 488887   565 8999     799999999999999999999   8999999999999999


Q ss_pred             EEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         195 VSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       195 v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +.|+|++.+|++|+.|++|++||+++++
T Consensus       240 ~~~~~~g~~l~s~s~D~~v~vwd~~~~~  267 (410)
T 1vyh_C          240 VRPNQDGTLIASCSNDQTVRVWVVATKE  267 (410)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            9999999999999999999999998764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.88  E-value=4.3e-21  Score=151.02  Aligned_cols=148  Identities=16%  Similarity=0.238  Sum_probs=120.4

Q ss_pred             ccccCCcEEEEEECCCCceeeee-------------------eeeecCCCCeeEEEEeecccccCC-CCeEEEEEeCCCe
Q psy3599          55 QLRSTGVIVSILCDDLGRLSKGK-------------------RLVLSQDCPITCLSWRSWISREAR-DPTLLVNIAANAV  114 (223)
Q Consensus        55 ~~~~~~~i~~~~~~~~~~~~~~~-------------------~~~~~~~~~i~~l~~~~~~~~~~~-~~~~l~~~~~~~~  114 (223)
                      +.+|.+.|.++.++|+++++.+.                   .+..| ...|.+++|+       | ++.+|++++.|+ 
T Consensus        93 ~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h-~~~v~~v~~~-------p~~~~~l~sgs~D~-  163 (304)
T 2ynn_A           93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH-EHFVMCVAFN-------PKDPSTFASGCLDR-  163 (304)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCC-CSCEEEEEEC-------TTCTTEEEEEETTS-
T ss_pred             EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhccc-CCcEEEEEEC-------CCCCCEEEEEeCCC-
Confidence            34688889999999987765433                   23345 7899999999       5 788999999999 


Q ss_pred             EEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEE
Q psy3599         115 CILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVL  193 (223)
Q Consensus       115 ~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~  193 (223)
                       .+++||+..+....... .+|...   +.. .|+|..   ++.+|++|+.|+.|++||+++   ++++..+.+|...|.
T Consensus       164 -~v~iwd~~~~~~~~~~~-~~~~~~---v~~~~~~~~~---~~~~l~s~s~D~~i~iWd~~~---~~~~~~~~~h~~~v~  232 (304)
T 2ynn_A          164 -TVKVWSLGQSTPNFTLT-TGQERG---VNYVDYYPLP---DKPYMITASDDLTIKIWDYQT---KSCVATLEGHMSNVS  232 (304)
T ss_dssp             -EEEEEETTCSSCSEEEE-CCCTTC---EEEEEECCST---TCCEEEEEETTSEEEEEETTT---TEEEEEEECCSSCEE
T ss_pred             -eEEEEECCCCCccceec-cCCcCc---EEEEEEEEcC---CCCEEEEEcCCCeEEEEeCCC---CccceeeCCCCCCEE
Confidence             99999987665443332 255455   444 666521   578999999999999999999   899999999999999


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         194 GVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       194 ~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +++|+|++.+|++|+.||+|++||+++++
T Consensus       233 ~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~  261 (304)
T 2ynn_A          233 FAVFHPTLPIIISGSEDGTLKIWNSSTYK  261 (304)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            99999999999999999999999998765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.88  E-value=1.3e-21  Score=155.44  Aligned_cols=142  Identities=23%  Similarity=0.312  Sum_probs=119.4

Q ss_pred             cCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEE
Q psy3599          58 STGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKV  119 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i  119 (223)
                      +...+..+.|+|+++.+.+.                  .+..+ ...|.+++|+       |++.+|++++.++  .+++
T Consensus       121 ~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~-~~~v~~~~~s-------pdg~~lasg~~dg--~i~i  190 (321)
T 3ow8_A          121 GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR-GKFILSIAYS-------PDGKYLASGAIDG--IINI  190 (321)
T ss_dssp             CTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECS-SSCEEEEEEC-------TTSSEEEEEETTS--CEEE
T ss_pred             CCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCC-CceEEEEEEC-------CCCCEEEEEcCCC--eEEE
Confidence            44456667777777665433                  22334 6789999999       9999999999999  8999


Q ss_pred             ecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEe
Q psy3599         120 LDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFN  198 (223)
Q Consensus       120 ~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~  198 (223)
                      ||..++..+.. + .+|...   +.+ +|+|     ++.+|++|+.|+.|++||++.   ++++..+.+|...|.+++|+
T Consensus       191 wd~~~~~~~~~-~-~~h~~~---v~~l~~sp-----d~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~h~~~v~~~~~s  257 (321)
T 3ow8_A          191 FDIATGKLLHT-L-EGHAMP---IRSLTFSP-----DSQLLVTASDDGYIKIYDVQH---ANLAGTLSGHASWVLNVAFC  257 (321)
T ss_dssp             EETTTTEEEEE-E-CCCSSC---CCEEEECT-----TSCEEEEECTTSCEEEEETTT---CCEEEEECCCSSCEEEEEEC
T ss_pred             EECCCCcEEEE-E-cccCCc---eeEEEEcC-----CCCEEEEEcCCCeEEEEECCC---cceeEEEcCCCCceEEEEEC
Confidence            99998876654 4 488877   444 8999     799999999999999999999   88889999999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         199 YDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       199 ~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      |++.+|++++.|++|++||+++++
T Consensus       258 p~~~~l~s~s~D~~v~iwd~~~~~  281 (321)
T 3ow8_A          258 PDDTHFVSSSSDKSVKVWDVGTRT  281 (321)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCCCEEEEEeCCCcEEEEeCCCCE
Confidence            999999999999999999998764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.88  E-value=4.4e-21  Score=153.81  Aligned_cols=145  Identities=17%  Similarity=0.281  Sum_probs=116.4

Q ss_pred             cCCcEEEEEECCCCceeeeee------e---------------------eecCCCCeeEEEEeecccccCCCCeEEEEEe
Q psy3599          58 STGVIVSILCDDLGRLSKGKR------L---------------------VLSQDCPITCLSWRSWISREARDPTLLVNIA  110 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~~------~---------------------~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~  110 (223)
                      +.+.|.++.|+|+|+++....      +                     .......|.+++|+       +++ .|++++
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-------~d~-~l~~~s  100 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWV-------GER-GILVAS  100 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEE-------TTT-EEEEEE
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEe-------CCC-eEEEEE
Confidence            456788888888887765431      0                     01114579999999       775 566888


Q ss_pred             CCCeEEEEEecCCCceEEee--eeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecc
Q psy3599         111 ANAVCILKVLDKEGAVQLKR--KFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQG  187 (223)
Q Consensus       111 ~~~~~~v~i~d~~~~~~~~~--~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~  187 (223)
                      .++  .|++||+.+++.+..  ....+|...   |.+ +|+|     ++.+|++|+.|+.|++||+.+   ++++..+.+
T Consensus       101 ~dg--~v~lWd~~~~~~~~~~~~~~~~H~~~---V~~v~~sp-----dg~~l~sgs~d~~i~iwd~~~---~~~~~~~~~  167 (344)
T 4gqb_B          101 DSG--AVELWELDENETLIVSKFCKYEHDDI---VSTVSVLS-----SGTQAVSGSKDICIKVWDLAQ---QVVLSSYRA  167 (344)
T ss_dssp             TTS--EEEEEEECTTSSCEEEEEEEECCSSC---EEEEEECT-----TSSEEEEEETTSCEEEEETTT---TEEEEEECC
T ss_pred             CCC--EEEEEeccCCCceeEeeccccCCCCC---EEEEEECC-----CCCEEEEEeCCCeEEEEECCC---CcEEEEEcC
Confidence            888  899999987754322  111388888   666 8999     799999999999999999999   899999999


Q ss_pred             cccCEEEEEEecCC-CEEEEEeCCCcEEEeeCCCCCC
Q psy3599         188 HACPVLGVSFNYDE-SLLATSDYQGLIILWSREKHEP  223 (223)
Q Consensus       188 h~~~v~~v~~~~~~-~~l~s~s~d~~i~iwd~~~~~~  223 (223)
                      |...|.+++|+|++ .+|++++.|++|++||++++++
T Consensus       168 h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~  204 (344)
T 4gqb_B          168 HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP  204 (344)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC
T ss_pred             cCCceEEEEecCCCCCceeeeccccccccccccccce
Confidence            99999999999987 5789999999999999998763

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.88  E-value=3.8e-21  Score=153.64  Aligned_cols=141  Identities=17%  Similarity=0.252  Sum_probs=119.1

Q ss_pred             cccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEE
Q psy3599          56 LRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCIL  117 (223)
Q Consensus        56 ~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v  117 (223)
                      .+|.+.|.++.++|+++++.+.                  .+..| ...|.+++|+       |++.+|++++.|+  .+
T Consensus       181 ~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h-~~~v~~v~~~-------p~~~~l~s~s~d~--~v  250 (340)
T 1got_B          181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH-ESDINAICFF-------PNGNAFATGSDDA--TC  250 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC-SSCEEEEEEC-------TTSSEEEEEETTS--CE
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC-cCCEEEEEEc-------CCCCEEEEEcCCC--cE
Confidence            3688899999999988766443                  23445 7899999999       9999999999999  89


Q ss_pred             EEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEE
Q psy3599         118 KVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVS  196 (223)
Q Consensus       118 ~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~  196 (223)
                      ++||+.++..+...   .|......+.+ +|+|     ++.++++|+.|+.|++||+.+   ++.+..+.+|...|.+++
T Consensus       251 ~iwd~~~~~~~~~~---~~~~~~~~v~~~~~s~-----~g~~l~~g~~d~~i~vwd~~~---~~~~~~~~~h~~~v~~~~  319 (340)
T 1got_B          251 RLFDLRADQELMTY---SHDNIICGITSVSFSK-----SGRLLLAGYDDFNCNVWDALK---ADRAGVLAGHDNRVSCLG  319 (340)
T ss_dssp             EEEETTTTEEEEEE---CCTTCCSCEEEEEECT-----TSSEEEEEETTSEEEEEETTT---CCEEEEEECCSSCEEEEE
T ss_pred             EEEECCCCcEEEEE---ccCCcccceEEEEECC-----CCCEEEEECCCCeEEEEEccc---CcEeeEeecCCCcEEEEE
Confidence            99999988666542   33332112665 8999     799999999999999999998   888899999999999999


Q ss_pred             EecCCCEEEEEeCCCcEEEee
Q psy3599         197 FNYDESLLATSDYQGLIILWS  217 (223)
Q Consensus       197 ~~~~~~~l~s~s~d~~i~iwd  217 (223)
                      |+|++.+|+||+.|++|++||
T Consensus       320 ~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          320 VTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECTTSSCEEEEETTSCEEEEC
T ss_pred             EcCCCCEEEEEcCCccEEecC
Confidence            999999999999999999997

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.88  E-value=3.6e-21  Score=155.46  Aligned_cols=144  Identities=13%  Similarity=0.175  Sum_probs=114.6

Q ss_pred             ccCCcEEEEEECCCCceeeee-------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCC--eE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK-------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANA--VC  115 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~-------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~--~~  115 (223)
                      .+.+.|..+.|+|+|+++...                   ....| ...|.+++|+       |++.++++++.++  ..
T Consensus       174 ~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~fs-------pdg~~l~~~s~d~~~~~  245 (365)
T 4h5i_A          174 ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDK-NWSLSKINFI-------ADDTVLIAASLKKGKGI  245 (365)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCT-TEEEEEEEEE-------ETTEEEEEEEESSSCCE
T ss_pred             CCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCC-CCCEEEEEEc-------CCCCEEEEEecCCccee
Confidence            577889999999999887543                   11223 6689999999       8999999887443  12


Q ss_pred             EEEEecCCCceEE---eeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceee-ccccc
Q psy3599         116 ILKVLDKEGAVQL---KRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKL-QGHAC  190 (223)
Q Consensus       116 ~v~i~d~~~~~~~---~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~h~~  190 (223)
                      .+++|+.......   ...+ .+|...   +.+ +|+|     ++.+|++|+.|+.|+|||+++   ++++..+ ++|..
T Consensus       246 ~i~~~~~~~~~~~~~~~~~~-~~~~~~---V~~~~~Sp-----dg~~lasgs~D~~V~iwd~~~---~~~~~~~~~gH~~  313 (365)
T 4h5i_A          246 VLTKISIKSGNTSVLRSKQV-TNRFKG---ITSMDVDM-----KGELAVLASNDNSIALVKLKD---LSMSKIFKQAHSF  313 (365)
T ss_dssp             EEEEEEEETTEEEEEEEEEE-ESSCSC---EEEEEECT-----TSCEEEEEETTSCEEEEETTT---TEEEEEETTSSSS
T ss_pred             EEeecccccceecceeeeee-cCCCCC---eEeEEECC-----CCCceEEEcCCCEEEEEECCC---CcEEEEecCcccC
Confidence            4667776654321   1122 377776   666 8999     899999999999999999999   8888875 78999


Q ss_pred             CEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         191 PVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       191 ~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      .|++++|+|++.+|||||.|++|+|||+..
T Consensus       314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          314 AITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             CEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            999999999999999999999999999864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.87  E-value=3e-21  Score=152.61  Aligned_cols=149  Identities=13%  Similarity=0.085  Sum_probs=111.1

Q ss_pred             ccCCcEEEEEECCCCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccc
Q psy3599          57 RSTGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNH  136 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h  136 (223)
                      +|++.|..+.++++|+.+.  .+..| ...++.++|++    .+.++.+|++++.|+  ++++||+++++.+... . +|
T Consensus       154 g~d~~V~~~~~s~dG~~~~--s~~~~-~~~v~~l~fs~----~~g~~~~LaSgS~D~--TIkIWDl~TGk~l~tL-~-g~  222 (356)
T 2w18_A          154 LSDQQVEVMTFAEDGGGKE--NQFLM-PPEETILTFAE----VQGMQEALLGTTIMN--NIVIWNLKTGQLLKKM-H-ID  222 (356)
T ss_dssp             STTCEEEEEEECTTSCEEE--EEEEC-CCSSCEEEEEE----EETSTTEEEEEETTS--EEEEEETTTCCEEEEE-E-CC
T ss_pred             CCCCcEEEEEECCCCceee--eeccC-CCceeeEEeec----cCCCCceEEEecCCC--cEEEEECCCCcEEEEE-c-CC
Confidence            5899999999999999877  44566 88888999981    012789999999999  9999999999877654 2 33


Q ss_pred             cCcceeEEE-eeecCcc----------------------------------------cCCCc------------EEEEec
Q psy3599         137 KSSKYQVRS-TFCPIMS----------------------------------------FREGA------------CVVTGS  163 (223)
Q Consensus       137 ~~~~~~i~~-~~s~~~~----------------------------------------~~~~~------------~l~sgs  163 (223)
                      ......+.+ +|+|.+.                                        .+++.            ++++|+
T Consensus       223 ~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS  302 (356)
T 2w18_A          223 DSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAIL  302 (356)
T ss_dssp             C---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEE
T ss_pred             CcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEc
Confidence            221111221 2333110                                        00122            578999


Q ss_pred             CCCcEEEEEcccCcccccceeecccccCEE-EEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         164 EDSCVYFLDIQSKEHKNAVNKLQGHACPVL-GVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       164 ~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      .|++|++||+.+   ++++.++++|...+. +++|+|+|.+|++|+.|++|+|||+.
T Consensus       303 ~DgTIkIWDl~t---Gk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          303 TSGTIAIWDLLL---GQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             TTSCEEEEETTT---CSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred             CCCcEEEEECCC---CcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence            999999999999   999999999987655 58999999999999999999999963

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.87  E-value=1.9e-20  Score=153.32  Aligned_cols=144  Identities=18%  Similarity=0.240  Sum_probs=124.6

Q ss_pred             cccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEE
Q psy3599          56 LRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCIL  117 (223)
Q Consensus        56 ~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v  117 (223)
                      .+|.+.|.++.|+++++++.+.                  .+..| ...|.+++|+       |++.+|++++.|+  .+
T Consensus       147 ~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h-~~~V~~v~~~-------p~~~~l~s~s~D~--~i  216 (410)
T 1vyh_C          147 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH-DHNVSSVSIM-------PNGDHIVSASRDK--TI  216 (410)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCC-SSCEEEEEEC-------SSSSEEEEEETTS--EE
T ss_pred             eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCC-CCCEEEEEEe-------CCCCEEEEEeCCC--eE
Confidence            3688899999999988776543                  23445 7799999999       9999999999999  99


Q ss_pred             EEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEE
Q psy3599         118 KVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVS  196 (223)
Q Consensus       118 ~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~  196 (223)
                      ++||..++..+.. + .+|...   +.+ .++|     ++.++++|+.|+.|++||+.+   +++...+.+|...|.+++
T Consensus       217 ~~wd~~~~~~~~~-~-~~h~~~---v~~~~~~~-----~g~~l~s~s~D~~v~vwd~~~---~~~~~~~~~h~~~v~~~~  283 (410)
T 1vyh_C          217 KMWEVQTGYCVKT-F-TGHREW---VRMVRPNQ-----DGTLIASCSNDQTVRVWVVAT---KECKAELREHRHVVECIS  283 (410)
T ss_dssp             EEEETTTCCEEEE-E-ECCSSC---EEEEEECT-----TSSEEEEEETTSCEEEEETTT---CCEEEEECCCSSCEEEEE
T ss_pred             EEEECCCCcEEEE-E-eCCCcc---EEEEEECC-----CCCEEEEEcCCCeEEEEECCC---CceeeEecCCCceEEEEE
Confidence            9999999877664 4 488887   555 7888     799999999999999999999   888899999999999999


Q ss_pred             EecC--------------------CCEEEEEeCCCcEEEeeCCCCC
Q psy3599         197 FNYD--------------------ESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       197 ~~~~--------------------~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      |+|+                    +.+|++|+.|+.|++||+++++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~  329 (410)
T 1vyh_C          284 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM  329 (410)
T ss_dssp             ECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred             EcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            9996                    6789999999999999998764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.87  E-value=3.5e-20  Score=148.01  Aligned_cols=147  Identities=15%  Similarity=0.213  Sum_probs=122.6

Q ss_pred             ccccccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCe
Q psy3599          53 NDQLRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAV  114 (223)
Q Consensus        53 ~~~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~  114 (223)
                      ..+.+|.+.|.++.|+++++++.+.                  .+..| ...|.+++|+       |++.+|++++.++ 
T Consensus        49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~-~~~v~~~~~s-------~~~~~l~s~~~d~-  119 (340)
T 1got_B           49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR-SSWVMTCAYA-------PSGNYVACGGLDN-  119 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECS-SSCEEEEEEC-------TTSSEEEEEETTC-
T ss_pred             eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecC-CccEEEEEEC-------CCCCEEEEEeCCC-
Confidence            3455899999999999988877554                  22344 7789999999       9999999999999 


Q ss_pred             EEEEEecCCCce---EEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeeccccc
Q psy3599         115 CILKVLDKEGAV---QLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHAC  190 (223)
Q Consensus       115 ~~v~i~d~~~~~---~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~  190 (223)
                       .+++|++.++.   .+...+ .+|...   +.+ .|++      +..+++++.|+.|++||+.+   ++++..+.+|..
T Consensus       120 -~v~iw~~~~~~~~~~~~~~~-~~h~~~---v~~~~~~~------~~~l~s~s~d~~i~~wd~~~---~~~~~~~~~h~~  185 (340)
T 1got_B          120 -ICSIYNLKTREGNVRVSREL-AGHTGY---LSCCRFLD------DNQIVTSSGDTTCALWDIET---GQQTTTFTGHTG  185 (340)
T ss_dssp             -EEEEEETTTCSBSCEEEEEE-ECCSSC---EEEEEEEE------TTEEEEEETTSCEEEEETTT---TEEEEEECCCSS
T ss_pred             -eEEEEECccCCCcceeEEEe-cCCCcc---EEEEEECC------CCcEEEEECCCcEEEEECCC---CcEEEEEcCCCC
Confidence             89999987642   233334 388877   555 7887      44589999999999999999   888999999999


Q ss_pred             CEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         191 PVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       191 ~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .|.+++|+|++.++++|+.|+.|++||+++++
T Consensus       186 ~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~  217 (340)
T 1got_B          186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGM  217 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEECCCCe
Confidence            99999999999999999999999999998764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.86  E-value=2.8e-20  Score=147.40  Aligned_cols=149  Identities=14%  Similarity=0.253  Sum_probs=121.3

Q ss_pred             ccccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEE
Q psy3599          55 QLRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCI  116 (223)
Q Consensus        55 ~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (223)
                      +.+|.+.|..+.|+++++++.+.                  .+..| ...|.+++|+       +++.+|++++.|+  .
T Consensus        61 ~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h-~~~v~~~~~~-------~~~~~l~s~s~D~--~  130 (319)
T 3frx_A           61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH-KSDVMSVDID-------KKASMIISGSRDK--T  130 (319)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEEC-------TTSCEEEEEETTS--C
T ss_pred             EeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccC-CCcEEEEEEc-------CCCCEEEEEeCCC--e
Confidence            44788889989998887766443                  34456 8899999999       9999999999999  8


Q ss_pred             EEEecCCCceEEeeeeeccccCcceeEEE-eeecCccc-CCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEE
Q psy3599         117 LKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSF-REGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLG  194 (223)
Q Consensus       117 v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~-~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~  194 (223)
                      +++||.... .+.. + .+|...   +.+ .|.|.... .++..+++|+.|+.|++||+++   .++...+.+|...|.+
T Consensus       131 i~vwd~~~~-~~~~-~-~~h~~~---v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~---~~~~~~~~~h~~~v~~  201 (319)
T 3frx_A          131 IKVWTIKGQ-CLAT-L-LGHNDW---VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ---FQIEADFIGHNSNINT  201 (319)
T ss_dssp             EEEEETTSC-EEEE-E-CCCSSC---EEEEEECCC------CCEEEEEETTSCEEEEETTT---TEEEEEECCCCSCEEE
T ss_pred             EEEEECCCC-eEEE-E-eccCCc---EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc---chhheeecCCCCcEEE
Confidence            999999754 4443 3 488877   444 77773211 1355899999999999999999   8888899999999999


Q ss_pred             EEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         195 VSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       195 v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ++|+|++.+|++|+.||.|++||+++++
T Consensus       202 ~~~sp~g~~l~s~~~dg~i~iwd~~~~~  229 (319)
T 3frx_A          202 LTASPDGTLIASAGKDGEIMLWNLAAKK  229 (319)
T ss_dssp             EEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            9999999999999999999999998754

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.86  E-value=2e-20  Score=149.81  Aligned_cols=141  Identities=14%  Similarity=0.245  Sum_probs=116.8

Q ss_pred             ccCCcEEEEEECCCCceeeee--------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK--------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCI  116 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~--------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (223)
                      +|.+.|.+++|+|+|+++.+.                    .+..| ..+|.+++|+       |++.+|++++.|+  .
T Consensus        59 ~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h-~~~v~~v~~s-------p~~~~l~s~s~D~--~  128 (345)
T 3fm0_A           59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGH-ENEVKSVAWA-------PSGNLLATCSRDK--S  128 (345)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCC-SSCEEEEEEC-------TTSSEEEEEETTS--C
T ss_pred             ccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCC-CCCceEEEEe-------CCCCEEEEEECCC--e
Confidence            678889999998887766443                    23345 7899999999       9999999999999  8


Q ss_pred             EEEecCCCceE--EeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCccc--ccceeecccccC
Q psy3599         117 LKVLDKEGAVQ--LKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHK--NAVNKLQGHACP  191 (223)
Q Consensus       117 v~i~d~~~~~~--~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~--~~~~~~~~h~~~  191 (223)
                      +++||+.++..  ....+ .+|...   +.+ .|+|     ++.+|++|+.|+.|++||.+.   +  .+...+.+|...
T Consensus       129 v~iwd~~~~~~~~~~~~~-~~h~~~---v~~~~~~p-----~~~~l~s~s~d~~i~~w~~~~---~~~~~~~~~~~h~~~  196 (345)
T 3fm0_A          129 VWVWEVDEEDEYECVSVL-NSHTQD---VKHVVWHP-----SQELLASASYDDTVKLYREEE---DDWVCCATLEGHEST  196 (345)
T ss_dssp             EEEEEECTTSCEEEEEEE-CCCCSC---EEEEEECS-----SSSCEEEEETTSCEEEEEEET---TEEEEEEEECCCSSC
T ss_pred             EEEEECCCCCCeEEEEEe-cCcCCC---eEEEEECC-----CCCEEEEEeCCCcEEEEEecC---CCEEEEEEecCCCCc
Confidence            99999875532  22233 478777   555 8999     799999999999999999987   4  356788999999


Q ss_pred             EEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         192 VLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       192 v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      |.+++|+|++.+|++++.|++|++||..
T Consensus       197 v~~l~~sp~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          197 VWSLAFDPSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence            9999999999999999999999999964

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.86  E-value=2.3e-20  Score=150.07  Aligned_cols=143  Identities=15%  Similarity=0.203  Sum_probs=118.5

Q ss_pred             cCCcEEEEEECCCCceeeee------------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCC
Q psy3599          58 STGVIVSILCDDLGRLSKGK------------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANA  113 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~------------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~  113 (223)
                      +...|.++.|+|+|..+.+.                        .+..| ...|.++.|+       +++..|++++.|+
T Consensus       105 ~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~-------~~~~~l~t~s~D~  176 (354)
T 2pbi_B          105 PCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMH-TNYLSACSFT-------NSDMQILTASGDG  176 (354)
T ss_dssp             SSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEEC-SSCEEEEEEC-------SSSSEEEEEETTS
T ss_pred             CCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeecc-CCcEEEEEEe-------CCCCEEEEEeCCC
Confidence            44556677777777665432                        23345 7889999999       8999999999999


Q ss_pred             eEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCE
Q psy3599         114 VCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPV  192 (223)
Q Consensus       114 ~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v  192 (223)
                        .+++||+.++..+.. + .+|...   +.+ .|+|..   ++.++++|+.||.|++||+++   ++++..+.+|...|
T Consensus       177 --~v~lwd~~~~~~~~~-~-~~h~~~---v~~~~~~~~~---~g~~l~sgs~Dg~v~~wd~~~---~~~~~~~~~h~~~v  243 (354)
T 2pbi_B          177 --TCALWDVESGQLLQS-F-HGHGAD---VLCLDLAPSE---TGNTFVSGGCDKKAMVWDMRS---GQCVQAFETHESDV  243 (354)
T ss_dssp             --EEEEEETTTCCEEEE-E-ECCSSC---EEEEEECCCS---SCCEEEEEETTSCEEEEETTT---CCEEEEECCCSSCE
T ss_pred             --cEEEEeCCCCeEEEE-E-cCCCCC---eEEEEEEeCC---CCCEEEEEeCCCeEEEEECCC---CcEEEEecCCCCCe
Confidence              999999998876654 4 488887   544 676621   468999999999999999999   88999999999999


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         193 LGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       193 ~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      .+++|+|++..|++|+.|++|++||++.+
T Consensus       244 ~~v~~~p~~~~l~s~s~D~~v~lwd~~~~  272 (354)
T 2pbi_B          244 NSVRYYPSGDAFASGSDDATCRLYDLRAD  272 (354)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            99999999999999999999999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.86  E-value=3.4e-20  Score=147.60  Aligned_cols=143  Identities=15%  Similarity=0.200  Sum_probs=112.6

Q ss_pred             cCCcEEEEEECCCCceeeee-------------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCC
Q psy3599          58 STGVIVSILCDDLGRLSKGK-------------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAAN  112 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~-------------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~  112 (223)
                      |.+.|.+++|+|+++++.+.                         .+..| ...|.+++|+       |++.+|++++.|
T Consensus        57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~s-------p~g~~las~s~D  128 (330)
T 2hes_X           57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH-ENEVKGVAWS-------NDGYYLATCSRD  128 (330)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEEC-------TTSCEEEEEETT
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCC-CCcEEEEEEC-------CCCCEEEEEeCC
Confidence            77788888888877665432                         12345 7899999999       999999999999


Q ss_pred             CeEEEEEecCCCc-e--EEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeeccc
Q psy3599         113 AVCILKVLDKEGA-V--QLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGH  188 (223)
Q Consensus       113 ~~~~v~i~d~~~~-~--~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h  188 (223)
                      +  .+++||.... .  .....+ .+|...   +.+ .|+|     ++.+|++|+.|+.|++||... ...+++..+.+|
T Consensus       129 ~--~v~iwd~~~~~~~~~~~~~~-~~h~~~---v~~v~~~p-----~~~~l~s~s~D~~i~iW~~~~-~~~~~~~~~~~h  196 (330)
T 2hes_X          129 K--SVWIWETDESGEEYECISVL-QEHSQD---VKHVIWHP-----SEALLASSSYDDTVRIWKDYD-DDWECVAVLNGH  196 (330)
T ss_dssp             S--CEEEEECCTTCCCCEEEEEE-CCCSSC---EEEEEECS-----SSSEEEEEETTSCEEEEEEET-TEEEEEEEECCC
T ss_pred             C--EEEEEeccCCCCCeEEEEEe-ccCCCc---eEEEEECC-----CCCEEEEEcCCCeEEEEECCC-CCeeEEEEccCC
Confidence            9  8999998422 1  222234 488887   555 8999     799999999999999999886 112678899999


Q ss_pred             ccCEEEEEEecC--CCEEEEEeCCCcEEEeeCCC
Q psy3599         189 ACPVLGVSFNYD--ESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       189 ~~~v~~v~~~~~--~~~l~s~s~d~~i~iwd~~~  220 (223)
                      ...|.+++|+|+  +..|++|+.|++|++||++.
T Consensus       197 ~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          197 EGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             SSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             CCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence            999999999998  67899999999999999864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.86  E-value=3e-20  Score=148.75  Aligned_cols=146  Identities=18%  Similarity=0.271  Sum_probs=116.1

Q ss_pred             ccCC-cEEEEEECCCCceeeee--------------------ee-eecCCCCeeEEEEeecccccCCCCeEEEEEeCCCe
Q psy3599          57 RSTG-VIVSILCDDLGRLSKGK--------------------RL-VLSQDCPITCLSWRSWISREARDPTLLVNIAANAV  114 (223)
Q Consensus        57 ~~~~-~i~~~~~~~~~~~~~~~--------------------~~-~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~  114 (223)
                      +|.+ .|..++|+|+|+++.+.                    .+ ..| ...|.+++|+       |++.+|++++.|+ 
T Consensus        13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h-~~~v~~~~~s-------p~g~~l~s~s~D~-   83 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH-QRTVRKVAWS-------PCGNYLASASFDA-   83 (345)
T ss_dssp             CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSC-SSCEEEEEEC-------TTSSEEEEEETTS-
T ss_pred             CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeecccc-CCcEEEEEEC-------CCCCEEEEEECCC-
Confidence            4554 77777888777665443                    11 234 7899999999       9999999999999 


Q ss_pred             EEEEEecCCCceE-EeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCE
Q psy3599         115 CILKVLDKEGAVQ-LKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPV  192 (223)
Q Consensus       115 ~~v~i~d~~~~~~-~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v  192 (223)
                       .+++|+...+.. ....+ .+|...   +.+ +|+|     ++.+|++|+.|+.|++||+......+++..+.+|...|
T Consensus        84 -~v~iw~~~~~~~~~~~~~-~~h~~~---v~~v~~sp-----~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v  153 (345)
T 3fm0_A           84 -TTCIWKKNQDDFECVTTL-EGHENE---VKSVAWAP-----SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV  153 (345)
T ss_dssp             -CEEEEEECCC-EEEEEEE-CCCSSC---EEEEEECT-----TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCE
T ss_pred             -cEEEEEccCCCeEEEEEc-cCCCCC---ceEEEEeC-----CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCe
Confidence             899999876532 22334 488888   555 8999     79999999999999999998721124567788999999


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         193 LGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       193 ~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      .+++|+|++.+|++++.|+.|++||.+.+
T Consensus       154 ~~~~~~p~~~~l~s~s~d~~i~~w~~~~~  182 (345)
T 3fm0_A          154 KHVVWHPSQELLASASYDDTVKLYREEED  182 (345)
T ss_dssp             EEEEECSSSSCEEEEETTSCEEEEEEETT
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEecCC
Confidence            99999999999999999999999998754

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.86  E-value=3.9e-20  Score=158.73  Aligned_cols=144  Identities=13%  Similarity=0.230  Sum_probs=122.1

Q ss_pred             cccCCcEEEEEECCCCceeeee--------------------eeeecCCCCeeEEEEeecccccCCCCe-EEEEEeCCCe
Q psy3599          56 LRSTGVIVSILCDDLGRLSKGK--------------------RLVLSQDCPITCLSWRSWISREARDPT-LLVNIAANAV  114 (223)
Q Consensus        56 ~~~~~~i~~~~~~~~~~~~~~~--------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~-~l~~~~~~~~  114 (223)
                      .+|.+.|.+++|+|+|+.+...                    .+..| ...|.+++|+       |++. .|++++.|+ 
T Consensus       100 ~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh-~~~v~~v~f~-------p~~~~~l~s~s~D~-  170 (611)
T 1nr0_A          100 PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQ-ARAMNSVDFK-------PSRPFRIISGSDDN-  170 (611)
T ss_dssp             ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCC-SSCEEEEEEC-------SSSSCEEEEEETTS-
T ss_pred             cccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCC-CCCceEEEEC-------CCCCeEEEEEeCCC-
Confidence            3678899999999988876432                    23455 7899999999       7775 699999999 


Q ss_pred             EEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeec-------
Q psy3599         115 CILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQ-------  186 (223)
Q Consensus       115 ~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~-------  186 (223)
                       .+++||..+++.+. .+ .+|...   +.+ +|+|     ++.+|++|+.|+.|++||..+   ++++..+.       
T Consensus       171 -~v~lwd~~~~~~~~-~l-~~H~~~---V~~v~fsp-----dg~~las~s~D~~i~lwd~~~---g~~~~~~~~~~~~~~  236 (611)
T 1nr0_A          171 -TVAIFEGPPFKFKS-TF-GEHTKF---VHSVRYNP-----DGSLFASTGGDGTIVLYNGVD---GTKTGVFEDDSLKNV  236 (611)
T ss_dssp             -CEEEEETTTBEEEE-EE-CCCSSC---EEEEEECT-----TSSEEEEEETTSCEEEEETTT---CCEEEECBCTTSSSC
T ss_pred             -eEEEEECCCCeEee-ee-ccccCc---eEEEEECC-----CCCEEEEEECCCcEEEEECCC---CcEeeeecccccccc
Confidence             89999998876655 44 489888   665 8999     799999999999999999998   77777763       


Q ss_pred             ccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         187 GHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       187 ~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +|...|.+++|+|++.+|++++.|++|++||+++++
T Consensus       237 ~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~  272 (611)
T 1nr0_A          237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK  272 (611)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             ccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence            799999999999999999999999999999998753

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.86  E-value=2.3e-20  Score=150.19  Aligned_cols=146  Identities=12%  Similarity=0.203  Sum_probs=119.3

Q ss_pred             ccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCC-eEEEEEeCCCeEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDP-TLLVNIAANAVCIL  117 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~v  117 (223)
                      +|.+.|.++.|+|+++.+.+.                  .+..| ...|++++|+       +++ .++++++.|+  .+
T Consensus       137 ~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h-~~~v~~v~~s-------~~~~~~~~s~~~dg--~v  206 (357)
T 4g56_B          137 EHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH-SSEVNCVAAC-------PGKDTIFLSCGEDG--RI  206 (357)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEC-------TTCSSCEEEEETTS--CE
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-CCCEEEEEEc-------cCCCceeeeeccCC--ce
Confidence            678899999999988876543                  33455 7899999999       665 4788888888  89


Q ss_pred             EEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEE
Q psy3599         118 KVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVS  196 (223)
Q Consensus       118 ~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~  196 (223)
                      ++||+.++..+.......|...   +.+ +|+|.    ++.++++|+.|+.|++||+++   ++++..+.+|...|.+++
T Consensus       207 ~~wd~~~~~~~~~~~~~~~~~~---v~~v~~sp~----~~~~la~g~~d~~i~~wd~~~---~~~~~~~~~~~~~v~~l~  276 (357)
T 4g56_B          207 LLWDTRKPKPATRIDFCASDTI---PTSVTWHPE----KDDTFACGDETGNVSLVNIKN---PDSAQTSAVHSQNITGLA  276 (357)
T ss_dssp             EECCTTSSSCBCBCCCTTCCSC---EEEEEECTT----STTEEEEEESSSCEEEEESSC---GGGCEEECCCSSCEEEEE
T ss_pred             EEEECCCCceeeeeeecccccc---ccchhhhhc----ccceEEEeecccceeEEECCC---CcEeEEEeccceeEEEEE
Confidence            9999988765543221234444   555 89995    467999999999999999999   899999999999999999


Q ss_pred             EecCC-CEEEEEeCCCcEEEeeCCCCC
Q psy3599         197 FNYDE-SLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       197 ~~~~~-~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      |+|++ .+|++|+.|++|+|||+++++
T Consensus       277 ~sp~~~~~lasgs~D~~i~iwd~~~~~  303 (357)
T 4g56_B          277 YSYHSSPFLASISEDCTVAVLDADFSE  303 (357)
T ss_dssp             ECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred             EcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence            99986 579999999999999998764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.86  E-value=4.3e-20  Score=148.64  Aligned_cols=145  Identities=19%  Similarity=0.279  Sum_probs=112.6

Q ss_pred             ccCCcEEEEEECCCCceeeeee----------------------------eeecCCCCeeEEEEeecccccCCCCeEEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGKR----------------------------LVLSQDCPITCLSWRSWISREARDPTLLVN  108 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~~----------------------------~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~  108 (223)
                      .|.+.|.+++|+|+|+++.+..                            ...| ...|.+++|+       +++.+|++
T Consensus        40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~-~~~V~~~~~s-------~d~~~l~~  111 (357)
T 4g56_B           40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQT-EAGVTDVAWV-------SEKGILVA  111 (357)
T ss_dssp             CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEEC-SSCEEEEEEE-------TTTEEEEE
T ss_pred             cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCC-CCCEEEEEEc-------CCCCEEEE
Confidence            5889999999999998886541                            1123 6679999999       88876654


Q ss_pred             EeCCCeEEEEEecCCCceEEee--eeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceee
Q psy3599         109 IAANAVCILKVLDKEGAVQLKR--KFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKL  185 (223)
Q Consensus       109 ~~~~~~~~v~i~d~~~~~~~~~--~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~  185 (223)
                       +.++  .|++||+.++..+..  ....+|...   +.+ +|+|     ++.+|++|+.|+.|++||+++   ++++..+
T Consensus       112 -s~dg--~v~lWd~~~~~~~~~~~~~~~~h~~~---V~~v~~sp-----dg~~l~sgs~dg~v~iwd~~~---~~~~~~~  177 (357)
T 4g56_B          112 -SDSG--AVELWEILEKESLLVNKFAKYEHDDI---VKTLSVFS-----DGTQAVSGGKDFSVKVWDLSQ---KAVLKSY  177 (357)
T ss_dssp             -ETTS--CEEEC--------CCCCEEECCCSSC---EEEEEECS-----SSSEEEEEETTSCEEEEETTT---TEEEEEE
T ss_pred             -ECCC--EEEEeeccccceeEEEeeccCCCCCC---EEEEEECC-----CCCEEEEEeCCCeEEEEECCC---CcEEEEE
Confidence             5566  799999887654321  111377777   666 8999     799999999999999999999   8999999


Q ss_pred             cccccCEEEEEEecCC-CEEEEEeCCCcEEEeeCCCCCC
Q psy3599         186 QGHACPVLGVSFNYDE-SLLATSDYQGLIILWSREKHEP  223 (223)
Q Consensus       186 ~~h~~~v~~v~~~~~~-~~l~s~s~d~~i~iwd~~~~~~  223 (223)
                      ++|...|.+++|+|++ .++++++.|++|++||++++++
T Consensus       178 ~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~  216 (357)
T 4g56_B          178 NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP  216 (357)
T ss_dssp             CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC
T ss_pred             cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce
Confidence            9999999999999986 4789999999999999988753

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.85  E-value=1.4e-19  Score=143.31  Aligned_cols=144  Identities=17%  Similarity=0.210  Sum_probs=118.0

Q ss_pred             cccccCCcEEEEEECCCC-ceeeee-----------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEE
Q psy3599          54 DQLRSTGVIVSILCDDLG-RLSKGK-----------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNI  109 (223)
Q Consensus        54 ~~~~~~~~i~~~~~~~~~-~~~~~~-----------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~  109 (223)
                      .+.+|.+.|.++.+++++ +++.+.                       .+..| ...|.+++|+       +++.+|+++
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s-------~dg~~l~s~   83 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH-SHIVQDCTLT-------ADGAYALSA   83 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECC-SSCEEEEEEC-------TTSSEEEEE
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCC-cccEEEEEEC-------CCCCEEEEE
Confidence            344677778777777632 333221                       24456 8899999999       999999999


Q ss_pred             eCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeeccc
Q psy3599         110 AANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGH  188 (223)
Q Consensus       110 ~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h  188 (223)
                      +.|+  .+++||+.++..+.. + .+|...   +.+ .|+|     ++.++++|+.|+.|++||++.    .++..+.+|
T Consensus        84 s~D~--~v~~wd~~~~~~~~~-~-~~h~~~---v~~~~~~~-----~~~~l~s~s~D~~i~vwd~~~----~~~~~~~~h  147 (319)
T 3frx_A           84 SWDK--TLRLWDVATGETYQR-F-VGHKSD---VMSVDIDK-----KASMIISGSRDKTIKVWTIKG----QCLATLLGH  147 (319)
T ss_dssp             ETTS--EEEEEETTTTEEEEE-E-ECCSSC---EEEEEECT-----TSCEEEEEETTSCEEEEETTS----CEEEEECCC
T ss_pred             eCCC--EEEEEECCCCCeeEE-E-ccCCCc---EEEEEEcC-----CCCEEEEEeCCCeEEEEECCC----CeEEEEecc
Confidence            9999  999999999877664 4 489888   555 8999     799999999999999999975    567888899


Q ss_pred             ccCEEEEEEecC------CCEEEEEeCCCcEEEeeCCCC
Q psy3599         189 ACPVLGVSFNYD------ESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       189 ~~~v~~v~~~~~------~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      ...|.++.|+|.      +..+++++.|+.|++||+++.
T Consensus       148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~  186 (319)
T 3frx_A          148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF  186 (319)
T ss_dssp             SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT
T ss_pred             CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc
Confidence            999999999985      448999999999999999864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.84  E-value=1.9e-19  Score=141.14  Aligned_cols=148  Identities=17%  Similarity=0.226  Sum_probs=113.2

Q ss_pred             ccCCcEEEEEECCCCceeeee--------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK--------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCI  116 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~--------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (223)
                      +|.+.|.+++|+++|+.+.+.                    .+..| ..+|.+++|++.     .++.+|++++.|+  .
T Consensus         7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH-~~~V~~v~~s~~-----~~g~~l~s~s~D~--~   78 (297)
T 2pm7_B            7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHP-----KFGTILASCSYDG--K   78 (297)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCC-SSCEEEEEECCG-----GGCSEEEEEETTT--E
T ss_pred             CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccc-cCCeEEEEecCC-----CcCCEEEEEcCCC--E
Confidence            577777777777777665433                    33455 789999999810     2488999999999  9


Q ss_pred             EEEecCCCceE-EeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccc--cceeecccccCE
Q psy3599         117 LKVLDKEGAVQ-LKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKN--AVNKLQGHACPV  192 (223)
Q Consensus       117 v~i~d~~~~~~-~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~--~~~~~~~h~~~v  192 (223)
                      +++||..++.. ....+ .+|...   +.+ .|+|..   .+.+|++|+.|+.|++||++.   ..  ....+.+|...|
T Consensus        79 v~iWd~~~~~~~~~~~~-~~h~~~---v~~v~~~p~~---~g~~l~s~s~d~~v~~wd~~~---~~~~~~~~~~~h~~~v  148 (297)
T 2pm7_B           79 VMIWKEENGRWSQIAVH-AVHSAS---VNSVQWAPHE---YGPMLLVASSDGKVSVVEFKE---NGTTSPIIIDAHAIGV  148 (297)
T ss_dssp             EEEEEBSSSCBCCCEEE-CCCSSC---EEEEEECCGG---GCSEEEEEETTSEEEEEEBCS---SSCBCCEEEECCSSCE
T ss_pred             EEEEEcCCCceEEEEEe-ecCCCc---eeEEEeCcCC---CCcEEEEEECCCcEEEEEecC---CCceeeeeeecccCcc
Confidence            99999987632 11223 377777   665 899820   178999999999999999987   42  245678899999


Q ss_pred             EEEEEecC-------------CCEEEEEeCCCcEEEeeCCCCC
Q psy3599         193 LGVSFNYD-------------ESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       193 ~~v~~~~~-------------~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+++|+|+             +.+|++|+.|++|++||+++++
T Consensus       149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~  191 (297)
T 2pm7_B          149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA  191 (297)
T ss_dssp             EEEEECCCC------------CCEEEEEETTSCEEEEEEETTT
T ss_pred             ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC
Confidence            99999997             4699999999999999987643

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.84  E-value=2.6e-19  Score=145.71  Aligned_cols=139  Identities=19%  Similarity=0.242  Sum_probs=113.5

Q ss_pred             CcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEec
Q psy3599          60 GVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLD  121 (223)
Q Consensus        60 ~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d  121 (223)
                      ..|.++.|+|+|+++.+.                  .+..| ...|.+++|+       +++.+|++++.|+  .+++||
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~-------p~~~~l~s~s~d~--~v~iwd  193 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH-EQDIYSLDYF-------PSGDKLVSGSGDR--TVRIWD  193 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEC-------TTSSEEEEEETTS--EEEEEE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccC-CCCEEEEEEc-------CCCCEEEEecCCC--cEEEEE
Confidence            358888888888766543                  33455 7899999999       9999999999999  999999


Q ss_pred             CCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceee-------cccccCEE
Q psy3599         122 KEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKL-------QGHACPVL  193 (223)
Q Consensus       122 ~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-------~~h~~~v~  193 (223)
                      +.++.....   ..+...   +.+ .|+|.    ++.++++|+.|+.|++||+++   +.++..+       .+|...|.
T Consensus       194 ~~~~~~~~~---~~~~~~---v~~~~~~~~----~~~~l~~~s~d~~v~iwd~~~---~~~~~~~~~~~~~~~~h~~~v~  260 (393)
T 1erj_A          194 LRTGQCSLT---LSIEDG---VTTVAVSPG----DGKYIAAGSLDRAVRVWDSET---GFLVERLDSENESGTGHKDSVY  260 (393)
T ss_dssp             TTTTEEEEE---EECSSC---EEEEEECST----TCCEEEEEETTSCEEEEETTT---CCEEEEEC------CCCSSCEE
T ss_pred             CCCCeeEEE---EEcCCC---cEEEEEECC----CCCEEEEEcCCCcEEEEECCC---CcEEEeecccccCCCCCCCCEE
Confidence            998876654   244444   444 78885    689999999999999999998   7766655       57999999


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         194 GVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       194 ~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      +++|+|++.+|++|+.|+.|++||+++.
T Consensus       261 ~v~~~~~g~~l~s~s~d~~v~~wd~~~~  288 (393)
T 1erj_A          261 SVVFTRDGQSVVSGSLDRSVKLWNLQNA  288 (393)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            9999999999999999999999998753

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.84  E-value=9.4e-20  Score=147.70  Aligned_cols=159  Identities=14%  Similarity=0.131  Sum_probs=111.6

Q ss_pred             ccccccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeeccc-----------------
Q psy3599          53 NDQLRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWIS-----------------   97 (223)
Q Consensus        53 ~~~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~-----------------   97 (223)
                      ..+.+|.+.|.++.|+|+++++.+.                  .+..| ...|.+++|+|...                 
T Consensus        60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h-~~~v~~~~~s~~g~~las~~~d~~v~iw~~~  138 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLH-CPWVMECAFAPNGQSVACGGLDSACSIFNLS  138 (380)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECC-CTTCCCCEECTTSSEEEECCSSSCCEEEECC
T ss_pred             ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecC-CCCEEEEEECCCCCEEEEeeCCCcEEEEECC
Confidence            3455899999999999988776543                  23334 55667777761000                 


Q ss_pred             --------------------------ccCCCCeEEEEEeCCCeEEEEEecCCCceEEeee---eeccccCcceeEEEeee
Q psy3599          98 --------------------------REARDPTLLVNIAANAVCILKVLDKEGAVQLKRK---FNVNHKSSKYQVRSTFC  148 (223)
Q Consensus        98 --------------------------~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~---~~~~h~~~~~~i~~~~s  148 (223)
                                                ..|.++..|++++.|+  .+++||+.++..+...   +..+|...+  ....|+
T Consensus       139 ~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~--~i~~wd~~~~~~~~~~~~~~~~~h~~~v--~~~~~~  214 (380)
T 3iz6_a          139 SQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ--TCVLWDVTTGQRISIFGSEFPSGHTADV--LSLSIN  214 (380)
T ss_dssp             CCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTS--CEEEECTTTCCEEEEECCCSSSSCCSCE--EEEEEC
T ss_pred             CCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCC--cEEEEEcCCCcEEEEeecccCCCCccCe--EEEEee
Confidence                                      0011233455555555  5666666665544321   112566553  233676


Q ss_pred             cCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         149 PIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       149 ~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +.    ++.++++|+.|+.|++||++..  .+++..+.+|...|.+++|+|++.+|++|+.|++|++||+++++
T Consensus       215 ~~----~~~~l~sgs~D~~v~~wd~~~~--~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~  282 (380)
T 3iz6_a          215 SL----NANMFISGSCDTTVRLWDLRIT--SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH  282 (380)
T ss_dssp             SS----SCCEEEEEETTSCEEEEETTTT--CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred             cC----CCCEEEEEECCCeEEEEECCCC--CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc
Confidence            54    6899999999999999999841  57788899999999999999999999999999999999998753

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.84  E-value=3e-19  Score=142.73  Aligned_cols=149  Identities=13%  Similarity=0.172  Sum_probs=115.8

Q ss_pred             ccccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEE
Q psy3599          55 QLRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCI  116 (223)
Q Consensus        55 ~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (223)
                      +.+|.+.|.++.+++++.++.+.                  .+..| ...|.+++|+       |++.+|++++.|+  .
T Consensus        72 l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h-~~~v~~v~~s-------p~~~~l~s~~~d~--~  141 (343)
T 2xzm_R           72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH-QSEVYSVAFS-------PDNRQILSAGAER--E  141 (343)
T ss_dssp             ECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC-CSCEEEEEEC-------SSTTEEEEEETTS--C
T ss_pred             hccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC-CCcEEEEEEC-------CCCCEEEEEcCCC--E
Confidence            44788889999999877765433                  34456 8899999999       9999999999999  8


Q ss_pred             EEEecCCCceEEeeeeeccccCcceeEEE-eeecCccc-----CCCcEEEEecCCCcEEEEEcccCcccccceeeccccc
Q psy3599         117 LKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSF-----REGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHAC  190 (223)
Q Consensus       117 v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~-----~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~  190 (223)
                      +++||.............+|...   +.+ .|+|....     ..+.++++|+.|+.|++||..    ......+.+|..
T Consensus       142 i~~wd~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~~h~~  214 (343)
T 2xzm_R          142 IKLWNILGECKFSSAEKENHSDW---VSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN----FQIRYTFKAHES  214 (343)
T ss_dssp             EEEEESSSCEEEECCTTTSCSSC---EEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT----TEEEEEEECCSS
T ss_pred             EEEEeccCCceeeeecccCCCce---eeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC----CceeEEEcCccc
Confidence            99999875432221111256666   555 88884210     013799999999999999943    466778889999


Q ss_pred             CEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         191 PVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       191 ~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      .|.+++|+|++.+|++|+.|+.|++||++.
T Consensus       215 ~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          215 NVNHLSISPNGKYIATGGKDKKLLIWDILN  244 (343)
T ss_dssp             CEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred             cceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            999999999999999999999999999853

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.84  E-value=1.2e-19  Score=153.91  Aligned_cols=137  Identities=19%  Similarity=0.369  Sum_probs=116.7

Q ss_pred             cccCCcEEEEEECCCCceeeee-----------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEE
Q psy3599          56 LRSTGVIVSILCDDLGRLSKGK-----------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK  118 (223)
Q Consensus        56 ~~~~~~i~~~~~~~~~~~~~~~-----------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~  118 (223)
                      .+|.+.|..+.|+|+++.+.+.                 .+..| ..+|.+++|+       |++.+|++++.++  .++
T Consensus       423 ~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~-~~~v~~~~~s-------pd~~~las~~~d~--~i~  492 (577)
T 2ymu_A          423 TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGH-SSSVRGVAFS-------PDGQTIASASDDK--TVK  492 (577)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECC-SSCEEEEEEC-------TTSCEEEEEETTS--EEE
T ss_pred             cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCC-CCCEEEEEEc-------CCCCEEEEEeCCC--EEE
Confidence            3677889999999987766443                 33445 7899999999       9999999999999  899


Q ss_pred             EecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEE
Q psy3599         119 VLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSF  197 (223)
Q Consensus       119 i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~  197 (223)
                      +||.. +..+. .+ .+|...   +.+ +|+|     ++.+|++++.||.|++||. +   ++++..+.+|...|++++|
T Consensus       493 iw~~~-~~~~~-~~-~~h~~~---v~~l~~s~-----dg~~l~s~~~dg~v~lwd~-~---~~~~~~~~~h~~~v~~~~f  557 (577)
T 2ymu_A          493 LWNRN-GQLLQ-TL-TGHSSS---VRGVAFSP-----DGQTIASASDDKTVKLWNR-N---GQLLQTLTGHSSSVWGVAF  557 (577)
T ss_dssp             EEETT-SCEEE-EE-ECCSSC---EEEEEECT-----TSSCEEEEETTSEEEEECT-T---SCEEEEEECCSSCEEEEEE
T ss_pred             EEcCC-CCEEE-EE-eCCCCC---EEEEEEcC-----CCCEEEEEECcCEEEEEeC-C---CCEEEEEcCCCCCEEEEEE
Confidence            99965 44454 34 489888   555 8999     7999999999999999995 4   6788999999999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEee
Q psy3599         198 NYDESLLATSDYQGLIILWS  217 (223)
Q Consensus       198 ~~~~~~l~s~s~d~~i~iwd  217 (223)
                      +|++.+|+|++.|++|++||
T Consensus       558 s~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          558 SPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             CTTSSCEEEEETTSCEEEEC
T ss_pred             cCCCCEEEEEeCCCEEEEeC
Confidence            99999999999999999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.84  E-value=2.4e-19  Score=144.11  Aligned_cols=141  Identities=11%  Similarity=0.185  Sum_probs=113.5

Q ss_pred             cccCCcEEEEEECC--CCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeE
Q psy3599          56 LRSTGVIVSILCDD--LGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVC  115 (223)
Q Consensus        56 ~~~~~~i~~~~~~~--~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~  115 (223)
                      .+|.+.|.++.+.+  +|..+.+.                  .+..| ...|.+++|+       |++.+|++++.|+  
T Consensus       193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h-~~~v~~v~~~-------p~~~~l~s~s~D~--  262 (354)
T 2pbi_B          193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH-ESDVNSVRYY-------PSGDAFASGSDDA--  262 (354)
T ss_dssp             ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEEC-------TTSSEEEEEETTS--
T ss_pred             cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CCCeEEEEEe-------CCCCEEEEEeCCC--
Confidence            35777777777766  34444332                  33445 7899999999       9999999999999  


Q ss_pred             EEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEE
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLG  194 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~  194 (223)
                      .+++||+..+..+... . .+.. ...+.+ .|+|     ++.++++|+.|+.|++||+.+   ++.+..+.+|...|.+
T Consensus       263 ~v~lwd~~~~~~~~~~-~-~~~~-~~~~~~~~~s~-----~g~~l~~g~~d~~i~vwd~~~---~~~~~~l~~h~~~v~~  331 (354)
T 2pbi_B          263 TCRLYDLRADREVAIY-S-KESI-IFGASSVDFSL-----SGRLLFAGYNDYTINVWDVLK---GSRVSILFGHENRVST  331 (354)
T ss_dssp             CEEEEETTTTEEEEEE-C-CTTC-CSCEEEEEECT-----TSSEEEEEETTSCEEEEETTT---CSEEEEECCCSSCEEE
T ss_pred             eEEEEECCCCcEEEEE-c-CCCc-ccceeEEEEeC-----CCCEEEEEECCCcEEEEECCC---CceEEEEECCCCcEEE
Confidence            8999999887655432 1 2221 111555 8999     799999999999999999998   8888999999999999


Q ss_pred             EEEecCCCEEEEEeCCCcEEEee
Q psy3599         195 VSFNYDESLLATSDYQGLIILWS  217 (223)
Q Consensus       195 v~~~~~~~~l~s~s~d~~i~iwd  217 (223)
                      ++|+|++.+|++|+.|++|++|+
T Consensus       332 l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          332 LRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEECCCCCEEEEEcCCCCEEecC
Confidence            99999999999999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.84  E-value=1.8e-19  Score=146.08  Aligned_cols=146  Identities=16%  Similarity=0.194  Sum_probs=114.0

Q ss_pred             ccCCcEEEEEECC-CCceeeee-------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEE
Q psy3599          57 RSTGVIVSILCDD-LGRLSKGK-------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCI  116 (223)
Q Consensus        57 ~~~~~i~~~~~~~-~~~~~~~~-------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (223)
                      +|...|.++.+++ ++.++.+.                   .+..| ...|.+++|+       |++.+|++++.|+  .
T Consensus       203 ~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h-~~~v~~v~~~-------p~~~~l~s~s~D~--~  272 (380)
T 3iz6_a          203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGH-EGDINSVKFF-------PDGQRFGTGSDDG--T  272 (380)
T ss_dssp             SCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCC-SSCCCEEEEC-------TTSSEEEEECSSS--C
T ss_pred             CCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCc-CCCeEEEEEe-------cCCCeEEEEcCCC--e
Confidence            4566677777765 44443222                   23445 7899999999       9999999999999  8


Q ss_pred             EEEecCCCceEEeeeeeccccCc----ceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceee----cc
Q psy3599         117 LKVLDKEGAVQLKRKFNVNHKSS----KYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKL----QG  187 (223)
Q Consensus       117 v~i~d~~~~~~~~~~~~~~h~~~----~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~----~~  187 (223)
                      +++||+.++..+... . .+...    ...+.+ +|+|     ++.++++|+.||.|++||...   ++.+..+    .+
T Consensus       273 i~lwd~~~~~~~~~~-~-~~~~~~~~~~~~v~~~~~s~-----~g~~l~~g~~dg~i~vwd~~~---~~~~~~~~~~~~~  342 (380)
T 3iz6_a          273 CRLFDMRTGHQLQVY-N-REPDRNDNELPIVTSVAFSI-----SGRLLFAGYSNGDCYVWDTLL---AEMVLNLGTLQNS  342 (380)
T ss_dssp             EEEEETTTTEEEEEE-C-CCCSSSCCSSCSCSEEEECS-----SSSEEEEECTTSCEEEEETTT---CCEEEEECCSCSS
T ss_pred             EEEEECCCCcEEEEe-c-ccccccccccCceEEEEECC-----CCCEEEEEECCCCEEEEECCC---CceEEEEecccCC
Confidence            999999988766543 1 22111    011444 8999     799999999999999999988   7766665    67


Q ss_pred             cccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         188 HACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       188 h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      |...|.+++|+|++.+|+||+.|++|++|++...+
T Consensus       343 h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          343 HEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             CCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             CCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            99999999999999999999999999999998653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.84  E-value=2.8e-19  Score=140.22  Aligned_cols=150  Identities=17%  Similarity=0.256  Sum_probs=111.8

Q ss_pred             ccccCCcEEEEEECC--CCceeeee--------------------eeeecCCCCeeEEEEeecccccCCC--CeEEEEEe
Q psy3599          55 QLRSTGVIVSILCDD--LGRLSKGK--------------------RLVLSQDCPITCLSWRSWISREARD--PTLLVNIA  110 (223)
Q Consensus        55 ~~~~~~~i~~~~~~~--~~~~~~~~--------------------~~~~~~~~~i~~l~~~~~~~~~~~~--~~~l~~~~  110 (223)
                      +.+|.+.|.++.|++  +++++.+.                    .+..| ...|.+++|+       |+  +.+|++++
T Consensus        49 l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h-~~~v~~v~~~-------p~~~g~~l~s~s  120 (297)
T 2pm7_B           49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVH-SASVNSVQWA-------PHEYGPMLLVAS  120 (297)
T ss_dssp             ECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCC-SSCEEEEEEC-------CGGGCSEEEEEE
T ss_pred             EccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecC-CCceeEEEeC-------cCCCCcEEEEEE
Confidence            346777777777764  24444322                    12234 7789999999       65  78999999


Q ss_pred             CCCeEEEEEecCCCceEE-eeeeeccccCcceeEEE-eeecCcc--------cCCCcEEEEecCCCcEEEEEcccCcccc
Q psy3599         111 ANAVCILKVLDKEGAVQL-KRKFNVNHKSSKYQVRS-TFCPIMS--------FREGACVVTGSEDSCVYFLDIQSKEHKN  180 (223)
Q Consensus       111 ~~~~~~v~i~d~~~~~~~-~~~~~~~h~~~~~~i~~-~~s~~~~--------~~~~~~l~sgs~dg~v~iwd~~~~~~~~  180 (223)
                      .|+  .+++||+.++... ...+ .+|...   +.+ .|+|...        ..++.+|++|+.|+.|++||+++   ++
T Consensus       121 ~d~--~v~~wd~~~~~~~~~~~~-~~h~~~---v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~---~~  191 (297)
T 2pm7_B          121 SDG--KVSVVEFKENGTTSPIII-DAHAIG---VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS---DA  191 (297)
T ss_dssp             TTS--EEEEEEBCSSSCBCCEEE-ECCSSC---EEEEEECCCC------------CCEEEEEETTSCEEEEEEET---TT
T ss_pred             CCC--cEEEEEecCCCceeeeee-ecccCc---cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC---CC
Confidence            999  8999998765321 2233 488877   555 8988310        00256999999999999999987   44


Q ss_pred             ----cceeecccccCEEEEEEecCC---CEEEEEeCCCcEEEeeCCCC
Q psy3599         181 ----AVNKLQGHACPVLGVSFNYDE---SLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       181 ----~~~~~~~h~~~v~~v~~~~~~---~~l~s~s~d~~i~iwd~~~~  221 (223)
                          +...+.+|...|.+++|+|++   .+|++++.|++|++||++++
T Consensus       192 ~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          192 QTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             ceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence                567889999999999999984   79999999999999998763

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.84  E-value=2.4e-19  Score=153.80  Aligned_cols=147  Identities=14%  Similarity=0.175  Sum_probs=119.0

Q ss_pred             ccccCCcEEEEEECCCCce-eeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeE
Q psy3599          55 QLRSTGVIVSILCDDLGRL-SKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVC  115 (223)
Q Consensus        55 ~~~~~~~i~~~~~~~~~~~-~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~  115 (223)
                      +.+|.+.|.++.|+|++.. +.+.                  .+..| ...|.+++|+       |++.+|++++.|+  
T Consensus       143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H-~~~V~~v~fs-------pdg~~las~s~D~--  212 (611)
T 1nr0_A          143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH-TKFVHSVRYN-------PDGSLFASTGGDG--  212 (611)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCC-SSCEEEEEEC-------TTSSEEEEEETTS--
T ss_pred             ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccc-cCceEEEEEC-------CCCCEEEEEECCC--
Confidence            3478889999999997652 3221                  34456 7899999999       9999999999999  


Q ss_pred             EEEEecCCCceEEeeeee-----ccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccc-------
Q psy3599         116 ILKVLDKEGAVQLKRKFN-----VNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAV-------  182 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~-----~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-------  182 (223)
                      .+++||..++..+.....     .+|...   +.+ +|+|     ++.+|++|+.|+.|++||+.+   ++++       
T Consensus       213 ~i~lwd~~~g~~~~~~~~~~~~~~~h~~~---V~~v~~sp-----dg~~l~s~s~D~~v~lWd~~~---~~~~~~~~~~~  281 (611)
T 1nr0_A          213 TIVLYNGVDGTKTGVFEDDSLKNVAHSGS---VFGLTWSP-----DGTKIASASADKTIKIWNVAT---LKVEKTIPVGT  281 (611)
T ss_dssp             CEEEEETTTCCEEEECBCTTSSSCSSSSC---EEEEEECT-----TSSEEEEEETTSEEEEEETTT---TEEEEEEECCS
T ss_pred             cEEEEECCCCcEeeeeccccccccccCCC---EEEEEECC-----CCCEEEEEeCCCeEEEEeCCC---CceeeeecCCC
Confidence            899999988866553211     168877   555 8999     799999999999999999986   4332       


Q ss_pred             ------------------------------------eeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         183 ------------------------------------NKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       183 ------------------------------------~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                                                          ..+.+|...|.+++|+|++.+|++++.|++|++||+++++
T Consensus       282 ~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~  357 (611)
T 1nr0_A          282 RIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI  357 (611)
T ss_dssp             SGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             CccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence                                                2345799999999999999999999999999999998754

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2.4e-19  Score=142.70  Aligned_cols=121  Identities=23%  Similarity=0.412  Sum_probs=95.3

Q ss_pred             CCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCce------EEeeeeeccccCcceeEEE-eeecCcccCC
Q psy3599          83 QDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAV------QLKRKFNVNHKSSKYQVRS-TFCPIMSFRE  155 (223)
Q Consensus        83 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~------~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~  155 (223)
                      +..+|.+++|+       |++.+|++++.|+  .+++|+.....      .....+ .+|...   +.+ +|+|     +
T Consensus        57 h~~~v~~v~~s-------p~~~~las~s~D~--~v~iw~~~~~~~~~~~~~~~~~~-~~h~~~---V~~v~~sp-----~  118 (330)
T 2hes_X           57 HKKAIRSVAWR-------PHTSLLAAGSFDS--TVSIWAKEESADRTFEMDLLAII-EGHENE---VKGVAWSN-----D  118 (330)
T ss_dssp             CCSCEEEEEEC-------TTSSEEEEEETTS--CEEEEEC-------CCCEEEEEE-C----C---EEEEEECT-----T
T ss_pred             ccCCEEEEEEC-------CCCCEEEEEeCCC--cEEEEEcccCcCccccceeEEEE-cCCCCc---EEEEEECC-----C
Confidence            37899999999       9999999999999  89999985321      222234 488887   555 8999     7


Q ss_pred             CcEEEEecCCCcEEEEEcccC-cccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         156 GACVVTGSEDSCVYFLDIQSK-EHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       156 ~~~l~sgs~dg~v~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      +.+|++|+.|+.|++||++.. ...+++..+.+|...|.+++|+|++.+|++++.|++|++||.+++
T Consensus       119 g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~  185 (330)
T 2hes_X          119 GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD  185 (330)
T ss_dssp             SCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT
T ss_pred             CCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            999999999999999999531 113567788999999999999999999999999999999997653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.83  E-value=4.3e-19  Score=144.43  Aligned_cols=144  Identities=21%  Similarity=0.298  Sum_probs=118.8

Q ss_pred             cccCCcEEEEEECCCCceeeee-----------------eeeec-----------------CCCCeeEEEEeecccccCC
Q psy3599          56 LRSTGVIVSILCDDLGRLSKGK-----------------RLVLS-----------------QDCPITCLSWRSWISREAR  101 (223)
Q Consensus        56 ~~~~~~i~~~~~~~~~~~~~~~-----------------~~~~~-----------------~~~~i~~l~~~~~~~~~~~  101 (223)
                      ++|.+.|.++.|+|+|+++.+.                 .+..+                 ....|.+++|+       +
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-------~  133 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS-------P  133 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC-------T
T ss_pred             cCCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC-------C
Confidence            3688999999999999887653                 11111                 01238999999       9


Q ss_pred             CCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccc
Q psy3599         102 DPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKN  180 (223)
Q Consensus       102 ~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~  180 (223)
                      ++.+|++++.|+  .+++||..++..+.. + .+|...   +.+ .|+|     ++.+|++|+.|+.|++||+++   ++
T Consensus       134 dg~~l~s~~~d~--~i~iwd~~~~~~~~~-~-~~h~~~---v~~~~~~p-----~~~~l~s~s~d~~v~iwd~~~---~~  198 (393)
T 1erj_A          134 DGKFLATGAEDR--LIRIWDIENRKIVMI-L-QGHEQD---IYSLDYFP-----SGDKLVSGSGDRTVRIWDLRT---GQ  198 (393)
T ss_dssp             TSSEEEEEETTS--CEEEEETTTTEEEEE-E-CCCSSC---EEEEEECT-----TSSEEEEEETTSEEEEEETTT---TE
T ss_pred             CCCEEEEEcCCC--eEEEEECCCCcEEEE-E-ccCCCC---EEEEEEcC-----CCCEEEEecCCCcEEEEECCC---Ce
Confidence            999999999999  899999998876654 4 489888   555 8999     799999999999999999999   77


Q ss_pred             cceeecccccCEEEEEEec-CCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         181 AVNKLQGHACPVLGVSFNY-DESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       181 ~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +...+. +...+.+++|+| ++.+|++|+.|+.|++||+++++
T Consensus       199 ~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~  240 (393)
T 1erj_A          199 CSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF  240 (393)
T ss_dssp             EEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC
T ss_pred             eEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence            777776 556799999999 89999999999999999998754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.83  E-value=5.3e-19  Score=139.57  Aligned_cols=144  Identities=18%  Similarity=0.282  Sum_probs=114.2

Q ss_pred             ccccCCcEEEEEECCCCceeeee----------------------eeeecCCCCeeEEEEeecccccCC--CCeEEEEEe
Q psy3599          55 QLRSTGVIVSILCDDLGRLSKGK----------------------RLVLSQDCPITCLSWRSWISREAR--DPTLLVNIA  110 (223)
Q Consensus        55 ~~~~~~~i~~~~~~~~~~~~~~~----------------------~~~~~~~~~i~~l~~~~~~~~~~~--~~~~l~~~~  110 (223)
                      +.+|.+.|.++.|+++++++.+.                      .+..| ..+|.+++|+       +  ++.+|++++
T Consensus         7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~v~~~~~~-------~~~d~~~l~s~~   78 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAH-DSSIVAIDWA-------SPEYGRIIASAS   78 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECC-SSCEEEEEEC-------CGGGCSEEEEEE
T ss_pred             CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccC-CCcEEEEEEc-------CCCCCCEEEEEc
Confidence            34688888888888877765433                      22345 7899999999       6  689999999


Q ss_pred             CCCeEEEEEecCCCce---------EEeeeeeccccCcceeEEE-eeecCcccCC--CcEEEEecCCCcEEEEEcccCcc
Q psy3599         111 ANAVCILKVLDKEGAV---------QLKRKFNVNHKSSKYQVRS-TFCPIMSFRE--GACVVTGSEDSCVYFLDIQSKEH  178 (223)
Q Consensus       111 ~~~~~~v~i~d~~~~~---------~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~--~~~l~sgs~dg~v~iwd~~~~~~  178 (223)
                      .|+  .+++||..++.         .+. .+ .+|...   +.+ .|+|     +  +.++++++.||.|++||+++   
T Consensus        79 ~dg--~v~vwd~~~~~~~~~~~~~~~~~-~~-~~~~~~---v~~~~~~~-----~~~~~~l~~~~~dg~v~iwd~~~---  143 (351)
T 3f3f_A           79 YDK--TVKLWEEDPDQEECSGRRWNKLC-TL-NDSKGS---LYSVKFAP-----AHLGLKLACLGNDGILRLYDALE---  143 (351)
T ss_dssp             TTS--CEEEEEECTTSCTTSSCSEEEEE-EE-CCCSSC---EEEEEECC-----GGGCSEEEEEETTCEEEEEECSS---
T ss_pred             CCC--eEEEEecCCCcccccccCcceee-ee-cccCCc---eeEEEEcC-----CCCCcEEEEecCCCcEEEecCCC---
Confidence            998  89999988752         233 33 377777   555 8999     6  89999999999999999865   


Q ss_pred             cc------------------------------------------------------------cceeecccccCEEEEEEe
Q psy3599         179 KN------------------------------------------------------------AVNKLQGHACPVLGVSFN  198 (223)
Q Consensus       179 ~~------------------------------------------------------------~~~~~~~h~~~v~~v~~~  198 (223)
                      ++                                                            .+..+.+|...|.+++|+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~  223 (351)
T 3f3f_A          144 PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWA  223 (351)
T ss_dssp             TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEEC
T ss_pred             hHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEEC
Confidence            22                                                            144566799999999999


Q ss_pred             cCC----CEEEEEeCCCcEEEeeCCCC
Q psy3599         199 YDE----SLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       199 ~~~----~~l~s~s~d~~i~iwd~~~~  221 (223)
                      |++    .+|++++.||.|++||++.+
T Consensus       224 p~~~~~~~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          224 PSIGRWYQLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             CCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred             CCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence            998    89999999999999998764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.83  E-value=2.6e-19  Score=140.90  Aligned_cols=122  Identities=16%  Similarity=0.339  Sum_probs=109.3

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      .+..| ..+|++++|+       +++.+|++++.++  .+++|+..++..... + .+|...   +.+ .|+|     ++
T Consensus        18 ~~~gh-~~~v~~~~~s-------~~~~~l~s~~~dg--~i~iw~~~~~~~~~~-~-~~h~~~---v~~~~~~~-----~~   77 (312)
T 4ery_A           18 TLAGH-TKAVSSVKFS-------PNGEWLASSSADK--LIKIWGAYDGKFEKT-I-SGHKLG---ISDVAWSS-----DS   77 (312)
T ss_dssp             EECCC-SSCEEEEEEC-------TTSSEEEEEETTS--CEEEEETTTCCEEEE-E-CCCSSC---EEEEEECT-----TS
T ss_pred             EEccc-CCcEEEEEEC-------CCCCEEEEeeCCC--eEEEEeCCCcccchh-h-ccCCCc---eEEEEEcC-----CC
Confidence            55667 8899999999       9999999999999  899999988766553 3 488877   555 8999     79


Q ss_pred             cEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         157 ACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+|++|+.|+.|++||+++   ++++..+.+|...|.++.|+|++++|++|+.|+.|++||+++++
T Consensus        78 ~~l~s~~~d~~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  140 (312)
T 4ery_A           78 NLLVSASDDKTLKIWDVSS---GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK  140 (312)
T ss_dssp             SEEEEEETTSEEEEEETTT---CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred             CEEEEECCCCEEEEEECCC---CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE
Confidence            9999999999999999999   88999999999999999999999999999999999999998764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.82  E-value=4.7e-19  Score=154.00  Aligned_cols=149  Identities=18%  Similarity=0.269  Sum_probs=121.9

Q ss_pred             ccccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEE
Q psy3599          55 QLRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCI  116 (223)
Q Consensus        55 ~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (223)
                      +.+|.+.|.++.++++++++.+.                  .+..| ...|.+++|+       +++.+|++++.|+  .
T Consensus       426 ~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h-~~~v~~~~~s-------~~~~~l~s~s~D~--~  495 (694)
T 3dm0_A          426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGH-TKDVLSVAFS-------LDNRQIVSASRDR--T  495 (694)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEEC-------TTSSCEEEEETTS--C
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCC-CCCEEEEEEe-------CCCCEEEEEeCCC--E
Confidence            34788999999999988876543                  34456 8899999999       9999999999999  8


Q ss_pred             EEEecCCCceEEeeee-eccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEE
Q psy3599         117 LKVLDKEGAVQLKRKF-NVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLG  194 (223)
Q Consensus       117 v~i~d~~~~~~~~~~~-~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~  194 (223)
                      +++||........... ..+|...   +.+ .|+|..   ....+++|+.|+.|++||+++   .++...+.+|...|.+
T Consensus       496 i~iwd~~~~~~~~~~~~~~~h~~~---v~~~~~~~~~---~~~~l~s~s~d~~v~vwd~~~---~~~~~~~~~h~~~v~~  566 (694)
T 3dm0_A          496 IKLWNTLGECKYTISEGGEGHRDW---VSCVRFSPNT---LQPTIVSASWDKTVKVWNLSN---CKLRSTLAGHTGYVST  566 (694)
T ss_dssp             EEEECTTSCEEEEECSSTTSCSSC---EEEEEECSCS---SSCEEEEEETTSCEEEEETTT---CCEEEEECCCSSCEEE
T ss_pred             EEEEECCCCcceeeccCCCCCCCc---EEEEEEeCCC---CcceEEEEeCCCeEEEEECCC---CcEEEEEcCCCCCEEE
Confidence            9999986553322110 1257666   666 899831   136899999999999999999   8888999999999999


Q ss_pred             EEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         195 VSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       195 v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ++|+|++.+|++|+.||.|++||+++++
T Consensus       567 v~~spdg~~l~sg~~Dg~i~iwd~~~~~  594 (694)
T 3dm0_A          567 VAVSPDGSLCASGGKDGVVLLWDLAEGK  594 (694)
T ss_dssp             EEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred             EEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence            9999999999999999999999998764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.82  E-value=5.2e-19  Score=141.29  Aligned_cols=121  Identities=16%  Similarity=0.226  Sum_probs=104.4

Q ss_pred             eeeecCCCCeeEEEE-----eecccccCCCCeEEEEEeCCCeEEEEEecCCCce------EEeeeeeccccCcceeEEE-
Q psy3599          78 RLVLSQDCPITCLSW-----RSWISREARDPTLLVNIAANAVCILKVLDKEGAV------QLKRKFNVNHKSSKYQVRS-  145 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~-----~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~------~~~~~~~~~h~~~~~~i~~-  145 (223)
                      .+.+| ...|++++|     +      ++++.+|++++.|+  .+++||...+.      .....+ .+|...   +.+ 
T Consensus        16 ~l~gH-~~~V~~~~~~~s~~~------~~d~~~l~sgs~D~--~v~iWd~~~~~~~~~~~~~~~~l-~~h~~~---V~~~   82 (343)
T 2xzm_R           16 ILEGH-SDWVTSIVAGFSQKE------NEDSPVLISGSRDK--TVMIWKLYEEEQNGYFGIPHKAL-TGHNHF---VSDL   82 (343)
T ss_dssp             EEECC-SSCEEEEEECCCSST------TCCCCEEEEEETTS--CEEEEEECSSCCSSBSEEEEEEE-CCCSSC---EEEE
T ss_pred             eeccc-hhhhhheeeEEEeec------CCCCCEEEEEcCCC--EEEEEECCcCCcccccccccchh-ccCCCc---eEEE
Confidence            56777 899999999     5      24899999999999  89999986432      222234 488888   555 


Q ss_pred             eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         146 TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       146 ~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      +|+|     ++.++++|+.|+.|++||+++   ++++..+.+|...|.+++|+|++.+|++++.|++|++||+.
T Consensus        83 ~~~~-----~~~~l~s~s~D~~v~lwd~~~---~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~  148 (343)
T 2xzm_R           83 ALSQ-----ENCFAISSSWDKTLRLWDLRT---GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL  148 (343)
T ss_dssp             EECS-----STTEEEEEETTSEEEEEETTS---SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred             EECC-----CCCEEEEEcCCCcEEEEECCC---CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence            8999     799999999999999999999   88899999999999999999999999999999999999986

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.82  E-value=5e-19  Score=145.83  Aligned_cols=145  Identities=15%  Similarity=0.143  Sum_probs=112.8

Q ss_pred             ccCCcEEEEEECC-CCceeeee--------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeE
Q psy3599          57 RSTGVIVSILCDD-LGRLSKGK--------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVC  115 (223)
Q Consensus        57 ~~~~~i~~~~~~~-~~~~~~~~--------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~  115 (223)
                      +++..|.+++|+| ++.+++++                    .+..| ..+|++++|+      |.++.+|++++.|+  
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH-~~~V~~l~f~------p~~~~~l~s~s~D~--  187 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGA-GGSITGLKFN------PLNTNQFYASSMEG--  187 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSS-SCCCCEEEEC------SSCTTEEEEECSSS--
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCC-CCCEEEEEEe------CCCCCEEEEEeCCC--
Confidence            5778899999998 45555433                    12235 7899999999      24789999999999  


Q ss_pred             EEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEE
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLG  194 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~  194 (223)
                      .+++||++++.. .... ..+..... +.+ .|+|     ++.+|++|+.||.|++||++.    +.+..+.+|...|.+
T Consensus       188 ~v~iwd~~~~~~-~~~~-~~~~~~~~-~~~~~~~~-----~~~~l~~g~~dg~i~~wd~~~----~~~~~~~~h~~~v~~  255 (435)
T 4e54_B          188 TTRLQDFKGNIL-RVFA-SSDTINIW-FCSLDVSA-----SSRMVVTGDNVGNVILLNMDG----KELWNLRMHKKKVTH  255 (435)
T ss_dssp             CEEEEETTSCEE-EEEE-CCSSCSCC-CCCEEEET-----TTTEEEEECSSSBEEEEESSS----CBCCCSBCCSSCEEE
T ss_pred             EEEEeeccCCce-eEEe-ccCCCCcc-EEEEEECC-----CCCEEEEEeCCCcEeeeccCc----ceeEEEecccceEEe
Confidence            899999987643 2222 13332211 334 7899     799999999999999999875    457788999999999


Q ss_pred             EEEecCCC-EEEEEeCCCcEEEeeCCCCC
Q psy3599         195 VSFNYDES-LLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       195 v~~~~~~~-~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ++|+|++. +|++|+.|+.|++||+++.+
T Consensus       256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~  284 (435)
T 4e54_B          256 VALNPCCDWFLATASVDQTVKIWDLRQVR  284 (435)
T ss_dssp             EEECTTCSSEEEEEETTSBCCEEETTTCC
T ss_pred             eeecCCCceEEEEecCcceeeEEeccccc
Confidence            99999865 78899999999999998754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.82  E-value=3.4e-19  Score=143.44  Aligned_cols=149  Identities=12%  Similarity=0.134  Sum_probs=113.6

Q ss_pred             cccccCCcEEEEEECCCCceeeee---------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCC
Q psy3599          54 DQLRSTGVIVSILCDDLGRLSKGK---------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAAN  112 (223)
Q Consensus        54 ~~~~~~~~i~~~~~~~~~~~~~~~---------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~  112 (223)
                      .+.+|.+.|.++.|+|+++++.+.                     .+..| ...|.+++|+       +++.+|++++.+
T Consensus        50 ~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~-------~~~~~l~~~~~d  121 (377)
T 3dwl_C           50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRL-NRAATFVRWS-------PNEDKFAVGSGA  121 (377)
T ss_dssp             CBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCC-SSCEEEEECC-------TTSSCCEEEESS
T ss_pred             EEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeccc-CCceEEEEEC-------CCCCEEEEEecC
Confidence            334678888888888877655432                     12234 7799999999       899999999999


Q ss_pred             CeEEEEEecCCCceE--Eeeeeecc-ccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCc-----------
Q psy3599         113 AVCILKVLDKEGAVQ--LKRKFNVN-HKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKE-----------  177 (223)
Q Consensus       113 ~~~~v~i~d~~~~~~--~~~~~~~~-h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~-----------  177 (223)
                      +  .+++||+.++..  +...+. + |...   +.+ +|+|     ++.+|++|+.|+.|++||+....           
T Consensus       122 ~--~i~iwd~~~~~~~~~~~~~~-~~h~~~---v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  190 (377)
T 3dwl_C          122 R--VISVCYFEQENDWWVSKHLK-RPLRST---ILSLDWHP-----NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWG  190 (377)
T ss_dssp             S--CEEECCC-----CCCCEEEC-SSCCSC---EEEEEECT-----TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSC
T ss_pred             C--eEEEEEECCcccceeeeEee-cccCCC---eEEEEEcC-----CCCEEEEEeCCCEEEEEEEEecccCCCccccccc
Confidence            8  899999987753  222332 4 7777   555 8999     79999999999999999985200           


Q ss_pred             ----ccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         178 ----HKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       178 ----~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                          .++++..+ +|...|.+++|+|++.+|++++.|+.|++||+++++
T Consensus       191 ~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~  238 (377)
T 3dwl_C          191 SRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE  238 (377)
T ss_dssp             SCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred             cccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence                04566666 899999999999999999999999999999998765

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.81  E-value=5.6e-19  Score=143.81  Aligned_cols=143  Identities=15%  Similarity=0.251  Sum_probs=117.0

Q ss_pred             ccCCcEEEEEECCCCceee-eeeeeecCCCCeeEEEEeecccccCC-CCeEEEEEeCCCeEEEEEecCCCce-------E
Q psy3599          57 RSTGVIVSILCDDLGRLSK-GKRLVLSQDCPITCLSWRSWISREAR-DPTLLVNIAANAVCILKVLDKEGAV-------Q  127 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~v~i~d~~~~~-------~  127 (223)
                      ..+|.|..+.++..+++.. ...+..| ..+|++++|+       + ++.+|++++.|+  .+++|+..++.       .
T Consensus        54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h-~~~V~~~~~~-------p~~~~~l~s~s~dg--~v~vw~~~~~~~~~~~~~~  123 (402)
T 2aq5_A           54 SGGGAFLVLPLGKTGRVDKNVPLVCGH-TAPVLDIAWC-------PHNDNVIASGSEDC--TVMVWEIPDGGLVLPLREP  123 (402)
T ss_dssp             SSSCCEEEEETTCCEECCTTCCCBCCC-SSCEEEEEEC-------TTCTTEEEEEETTS--EEEEEECCTTCCSSCBCSC
T ss_pred             cCCCEEEEEECccCCCCCCCCceEecC-CCCEEEEEeC-------CCCCCEEEEEeCCC--eEEEEEccCCCCccccCCc
Confidence            3467777666665554422 2245566 8999999999       7 899999999999  89999998763       2


Q ss_pred             EeeeeeccccCcceeEEE-eeecCcccCCC-cEEEEecCCCcEEEEEcccCcccccceee--cccccCEEEEEEecCCCE
Q psy3599         128 LKRKFNVNHKSSKYQVRS-TFCPIMSFREG-ACVVTGSEDSCVYFLDIQSKEHKNAVNKL--QGHACPVLGVSFNYDESL  203 (223)
Q Consensus       128 ~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~-~~l~sgs~dg~v~iwd~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~  203 (223)
                      +. .+ .+|...   +.+ .|+|     ++ .++++|+.||.|++||+++   ++++..+  .+|...|.+++|+|++.+
T Consensus       124 ~~-~~-~~h~~~---v~~~~~~p-----~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~  190 (402)
T 2aq5_A          124 VI-TL-EGHTKR---VGIVAWHP-----TAQNVLLSAGCDNVILVWDVGT---GAAVLTLGPDVHPDTIYSVDWSRDGAL  190 (402)
T ss_dssp             SE-EE-ECCSSC---EEEEEECS-----SBTTEEEEEETTSCEEEEETTT---TEEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred             eE-Ee-cCCCCe---EEEEEECc-----CCCCEEEEEcCCCEEEEEECCC---CCccEEEecCCCCCceEEEEECCCCCE
Confidence            22 33 388877   555 8999     55 7999999999999999999   8888888  789999999999999999


Q ss_pred             EEEEeCCCcEEEeeCCCCC
Q psy3599         204 LATSDYQGLIILWSREKHE  222 (223)
Q Consensus       204 l~s~s~d~~i~iwd~~~~~  222 (223)
                      |++++.|+.|++||+++++
T Consensus       191 l~~~~~d~~i~iwd~~~~~  209 (402)
T 2aq5_A          191 ICTSCRDKRVRVIEPRKGT  209 (402)
T ss_dssp             EEEEETTSEEEEEETTTTE
T ss_pred             EEEEecCCcEEEEeCCCCc
Confidence            9999999999999998764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.81  E-value=1.9e-18  Score=136.73  Aligned_cols=119  Identities=12%  Similarity=0.167  Sum_probs=95.5

Q ss_pred             eeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCc
Q psy3599          79 LVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGA  157 (223)
Q Consensus        79 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~  157 (223)
                      +..| ..+|++++|+       |++.+|++++.|+  .+++||..+...+...   .+...   +.+ .|+|     ++ 
T Consensus       211 ~~~h-~~~v~~~~~s-------~~~~~l~s~s~Dg--~i~iwd~~~~~~~~~~---~~~~~---v~~~~~~~-----~~-  268 (340)
T 4aow_A          211 HIGH-TGYLNTVTVS-------PDGSLCASGGKDG--QAMLWDLNEGKHLYTL---DGGDI---INALCFSP-----NR-  268 (340)
T ss_dssp             ECCC-SSCEEEEEEC-------TTSSEEEEEETTC--EEEEEETTTTEEEEEE---ECSSC---EEEEEECS-----SS-
T ss_pred             ecCC-CCcEEEEEEC-------CCCCEEEEEeCCC--eEEEEEeccCceeeee---cCCce---EEeeecCC-----CC-
Confidence            4455 7899999999       9999999999999  9999999988776542   33344   555 7888     44 


Q ss_pred             EEEEecCCCcEEEEEcccCcccccceee---------cccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         158 CVVTGSEDSCVYFLDIQSKEHKNAVNKL---------QGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       158 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~---------~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+++++.|+.|++||++.   +.++..+         .+|...|++++|+|++++|++|+.||.|+|||+++|+
T Consensus       269 ~~~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          269 YWLCAATGPSIKIWDLEG---KIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             SEEEEEETTEEEEEETTT---TEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             ceeeccCCCEEEEEECCC---CeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            455677899999999987   5544433         4688899999999999999999999999999999875

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.81  E-value=3.7e-18  Score=137.85  Aligned_cols=146  Identities=15%  Similarity=0.127  Sum_probs=117.3

Q ss_pred             cccccCCcEEEEEECCCC-ceeeee------------------eee--ecCCCCeeEEEEeecccccCC-CCeEEEEEeC
Q psy3599          54 DQLRSTGVIVSILCDDLG-RLSKGK------------------RLV--LSQDCPITCLSWRSWISREAR-DPTLLVNIAA  111 (223)
Q Consensus        54 ~~~~~~~~i~~~~~~~~~-~~~~~~------------------~~~--~~~~~~i~~l~~~~~~~~~~~-~~~~l~~~~~  111 (223)
                      .+.+|.+.|.++.|++++ +++.+.                  .+.  .| ...|.+++|+       + ++.+|++++.
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h-~~~v~~~~~~-------~~~~~~l~s~~~  139 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGP-GDAITGMKFN-------QFNTNQLFVSSI  139 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCST-TCBEEEEEEE-------TTEEEEEEEEET
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCc-CCceeEEEeC-------CCCCCEEEEEeC
Confidence            445788999999999987 665443                  121  24 8899999999       7 7899999999


Q ss_pred             CCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeeccccc
Q psy3599         112 NAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHAC  190 (223)
Q Consensus       112 ~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~  190 (223)
                      ++  .+++||..+. .+...  ..+......+.+ +|+|     ++.++++|+.|+.|++||+ .   ++++..+.+|..
T Consensus       140 d~--~i~iwd~~~~-~~~~~--~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~i~d~-~---~~~~~~~~~h~~  205 (383)
T 3ei3_B          140 RG--ATTLRDFSGS-VIQVF--AKTDSWDYWYCCVDVSV-----SRQMLATGDSTGRLLLLGL-D---GHEIFKEKLHKA  205 (383)
T ss_dssp             TT--EEEEEETTSC-EEEEE--ECCCCSSCCEEEEEEET-----TTTEEEEEETTSEEEEEET-T---SCEEEEEECSSS
T ss_pred             CC--EEEEEECCCC-ceEEE--eccCCCCCCeEEEEECC-----CCCEEEEECCCCCEEEEEC-C---CCEEEEeccCCC
Confidence            99  8999999864 33322  233321112666 8999     7999999999999999999 4   567888999999


Q ss_pred             CEEEEEEecCCC-EEEEEeCCCcEEEeeCCCC
Q psy3599         191 PVLGVSFNYDES-LLATSDYQGLIILWSREKH  221 (223)
Q Consensus       191 ~v~~v~~~~~~~-~l~s~s~d~~i~iwd~~~~  221 (223)
                      .|.+++|+|++. +|++++.|+.|++||++++
T Consensus       206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  237 (383)
T 3ei3_B          206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNI  237 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEEGGGC
T ss_pred             cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCC
Confidence            999999999998 9999999999999999873

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.81  E-value=5.2e-18  Score=139.08  Aligned_cols=144  Identities=13%  Similarity=0.224  Sum_probs=111.2

Q ss_pred             ccCCcEEEEEECCCCceeeee----------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEE--eCC
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK----------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNI--AAN  112 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~----------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~--~~~  112 (223)
                      +|.+.+..+.++++++.+.+.                      ....| ...|.+++|+      |.++.+++++  +.|
T Consensus       228 ~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~-~~~V~~~~~~------p~~~~~la~~~gs~D  300 (420)
T 4gga_A          228 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH-QGAVKAVAWC------PWQSNVLATGGGTSD  300 (420)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCC-SSCEEEEEEC------TTCTTEEEEEECTTT
T ss_pred             ccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeeccc-CCceeeeeeC------CCcccEEEEEeecCC
Confidence            567778888888876655432                      12223 6789999999      2455666654  467


Q ss_pred             CeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEe--cCCCcEEEEEcccCcccccceeeccccc
Q psy3599         113 AVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTG--SEDSCVYFLDIQSKEHKNAVNKLQGHAC  190 (223)
Q Consensus       113 ~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sg--s~dg~v~iwd~~~~~~~~~~~~~~~h~~  190 (223)
                      +  .|++||..++..+...   .+...+  ..+.|+|     ++..++++  +.|+.|++||+.+   ++++..+.+|..
T Consensus       301 ~--~I~iwd~~t~~~~~~~---~~~~~v--~~~~~~~-----~~~~lv~~sg~~d~~I~iwd~~~---~~~v~~l~gH~~  365 (420)
T 4gga_A          301 R--HIRIWNVCSGACLSAV---DAHSQV--CSILWSP-----HYKELISGHGFAQNQLVIWKYPT---MAKVAELKGHTS  365 (420)
T ss_dssp             C--EEEEEETTTTEEEEEE---ECSSCE--EEEEEET-----TTTEEEEEECTTTCCEEEEETTT---CCEEEEECCCSS
T ss_pred             C--EEEEEeCCccccceee---ccccce--eeeeecC-----CCCeEEEEEecCCCEEEEEECCC---CcEEEEEcCCCC
Confidence            8  8999999999776643   233332  4458888     57766654  4799999999999   899999999999


Q ss_pred             CEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         191 PVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       191 ~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .|++++|+|+|.+|+||+.|++|+|||+....
T Consensus       366 ~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          366 RVLSLTMSPDGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             CEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            99999999999999999999999999987644

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.81  E-value=4.7e-18  Score=135.56  Aligned_cols=117  Identities=19%  Similarity=0.371  Sum_probs=102.7

Q ss_pred             CCCeeEEEEeecccccCCC----CeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcE
Q psy3599          84 DCPITCLSWRSWISREARD----PTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGAC  158 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~----~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~  158 (223)
                      ...|.+++|+       ++    +.+|++++.++  .+++||..++..+.. + .+|...   +.+ .|+|.    ++.+
T Consensus        69 ~~~v~~~~~~-------~~~~~~~~~l~~~~~dg--~i~v~d~~~~~~~~~-~-~~~~~~---i~~~~~~~~----~~~~  130 (366)
T 3k26_A           69 DENFYTCAWT-------YDSNTSHPLLAVAGSRG--IIRIINPITMQCIKH-Y-VGHGNA---INELKFHPR----DPNL  130 (366)
T ss_dssp             TCCEEEEEEE-------ECTTTCCEEEEEEETTC--EEEEECTTTCCEEEE-E-ESCCSC---EEEEEECSS----CTTE
T ss_pred             CCcEEEEEec-------cCCCCCCCEEEEecCCC--EEEEEEchhceEeee-e-cCCCCc---EEEEEECCC----CCCE
Confidence            5789999999       66    78999999999  999999998876654 4 378877   565 89984    5899


Q ss_pred             EEEecCCCcEEEEEcccCcccccceee---cccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         159 VVTGSEDSCVYFLDIQSKEHKNAVNKL---QGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       159 l~sgs~dg~v~iwd~~~~~~~~~~~~~---~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      +++|+.||.|++||+++   ++.+..+   .+|...|.+++|+|++..|++++.||.|++||++++
T Consensus       131 l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  193 (366)
T 3k26_A          131 LLSVSKDHALRLWNIQT---DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK  193 (366)
T ss_dssp             EEEEETTSCEEEEETTT---TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSH
T ss_pred             EEEEeCCCeEEEEEeec---CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCC
Confidence            99999999999999998   7777777   789999999999999999999999999999999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.80  E-value=3e-19  Score=143.75  Aligned_cols=119  Identities=15%  Similarity=0.202  Sum_probs=94.4

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCce---EEeeeeeccccCcceeEEE-eeecCccc
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAV---QLKRKFNVNHKSSKYQVRS-TFCPIMSF  153 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~---~~~~~~~~~h~~~~~~i~~-~~s~~~~~  153 (223)
                      .+..| ...|.+++|+       +++.+|++++.|+  .+++||..++.   ... .+ .+|...   +.+ .|+|    
T Consensus        50 ~~~~h-~~~v~~~~~s-------~~~~~l~s~s~d~--~v~vwd~~~~~~~~~~~-~~-~~~~~~---v~~~~~~~----  110 (377)
T 3dwl_C           50 TFSDH-DKIVTCVDWA-------PKSNRIVTCSQDR--NAYVYEKRPDGTWKQTL-VL-LRLNRA---ATFVRWSP----  110 (377)
T ss_dssp             CBCCC-SSCEEEEEEC-------TTTCCEEEEETTS--SEEEC------CCCCEE-EC-CCCSSC---EEEEECCT----
T ss_pred             EEecC-CceEEEEEEe-------CCCCEEEEEeCCC--eEEEEEcCCCCceeeee-Ee-cccCCc---eEEEEECC----
Confidence            34556 8899999999       9999999999988  89999998775   222 22 477777   555 8999    


Q ss_pred             CCCcEEEEecCCCcEEEEEcccCcccc---cceeecc-cccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         154 REGACVVTGSEDSCVYFLDIQSKEHKN---AVNKLQG-HACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       154 ~~~~~l~sgs~dg~v~iwd~~~~~~~~---~~~~~~~-h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                       ++.+|++|+.|+.|++||++.   ++   +...+.. |...|.+++|+|++.+|++++.|+.|++||++
T Consensus       111 -~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  176 (377)
T 3dwl_C          111 -NEDKFAVGSGARVISVCYFEQ---ENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAY  176 (377)
T ss_dssp             -TSSCCEEEESSSCEEECCC--------CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEEC
T ss_pred             -CCCEEEEEecCCeEEEEEECC---cccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEE
Confidence             799999999999999999998   55   4677777 99999999999999999999999999999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.80  E-value=3.7e-18  Score=144.70  Aligned_cols=138  Identities=21%  Similarity=0.406  Sum_probs=116.9

Q ss_pred             ccCCcEEEEEECCCCceeeee-----------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK-----------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKV  119 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~-----------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i  119 (223)
                      +|.+.|.++.|+|+|+.+.+.                 .+..| ...|++++|+       |++.+|++++.++  .+++
T Consensus       383 ~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~-~~~v~~~~~s-------~d~~~l~~~~~d~--~v~~  452 (577)
T 2ymu_A          383 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH-SSSVWGVAFS-------PDDQTIASASDDK--TVKL  452 (577)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECC-SSCEEEEEEC-------TTSSEEEEEETTS--EEEE
T ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCC-CCCeEEEEEC-------CCCCEEEEEcCCC--EEEE
Confidence            577889999999988766443                 23445 7899999999       9999999999999  8999


Q ss_pred             ecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEe
Q psy3599         120 LDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFN  198 (223)
Q Consensus       120 ~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~  198 (223)
                      ||.... .+. .+ .+|...   +.+ +|+|     ++.+|++++.|+.|++||. +   ++++..+.+|...|++++|+
T Consensus       453 w~~~~~-~~~-~~-~~~~~~---v~~~~~sp-----d~~~las~~~d~~i~iw~~-~---~~~~~~~~~h~~~v~~l~~s  517 (577)
T 2ymu_A          453 WNRNGQ-LLQ-TL-TGHSSS---VRGVAFSP-----DGQTIASASDDKTVKLWNR-N---GQLLQTLTGHSSSVRGVAFS  517 (577)
T ss_dssp             EETTSC-EEE-EE-ECCSSC---EEEEEECT-----TSCEEEEEETTSEEEEEET-T---SCEEEEEECCSSCEEEEEEC
T ss_pred             EECCCC-EEE-EE-cCCCCC---EEEEEEcC-----CCCEEEEEeCCCEEEEEcC-C---CCEEEEEeCCCCCEEEEEEc
Confidence            997543 444 33 488877   665 8999     8999999999999999995 4   57888999999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEeeCC
Q psy3599         199 YDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       199 ~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      |++.+|++++.|+.|++||..
T Consensus       518 ~dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          518 PDGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             TTSSCEEEEETTSEEEEECTT
T ss_pred             CCCCEEEEEECcCEEEEEeCC
Confidence            999999999999999999963

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.80  E-value=4.3e-18  Score=136.43  Aligned_cols=145  Identities=18%  Similarity=0.285  Sum_probs=116.5

Q ss_pred             ccccCCcEEEEEECCCCceeeee--------------------eeeecCCCCeeEEEEeecccccCCC--CeEEEEEeCC
Q psy3599          55 QLRSTGVIVSILCDDLGRLSKGK--------------------RLVLSQDCPITCLSWRSWISREARD--PTLLVNIAAN  112 (223)
Q Consensus        55 ~~~~~~~i~~~~~~~~~~~~~~~--------------------~~~~~~~~~i~~l~~~~~~~~~~~~--~~~l~~~~~~  112 (223)
                      +.+|.+.|.++.|+++++++.+.                    .+..| ..+|++++|+       ++  +.+|++++.|
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h-~~~v~~~~~~-------~~~~~~~l~s~~~d   78 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWA-------HPKFGTILASCSYD   78 (379)
T ss_dssp             EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEEC-------CGGGCSEEEEEETT
T ss_pred             ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCC-CCcEEEEEeC-------CCCCCCEEEEeccC
Confidence            34678888888888877665433                    23345 7899999998       55  8999999999


Q ss_pred             CeEEEEEecCCCce--EEeeeeeccccCcceeEEE-eeecCcccCC--CcEEEEecCCCcEEEEEcccCccc--ccceee
Q psy3599         113 AVCILKVLDKEGAV--QLKRKFNVNHKSSKYQVRS-TFCPIMSFRE--GACVVTGSEDSCVYFLDIQSKEHK--NAVNKL  185 (223)
Q Consensus       113 ~~~~v~i~d~~~~~--~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~--~~~l~sgs~dg~v~iwd~~~~~~~--~~~~~~  185 (223)
                      +  .+++||..++.  .+. .+ .+|...   +.+ .|+|     +  +.++++++.|+.|++||+..   .  .....+
T Consensus        79 g--~v~iwd~~~~~~~~~~-~~-~~~~~~---v~~~~~~~-----~~~~~~l~~~~~d~~i~v~d~~~---~~~~~~~~~  143 (379)
T 3jrp_A           79 G--KVLIWKEENGRWSQIA-VH-AVHSAS---VNSVQWAP-----HEYGPLLLVASSDGKVSVVEFKE---NGTTSPIII  143 (379)
T ss_dssp             S--CEEEEEEETTEEEEEE-EE-CCCSSC---EEEEEECC-----GGGCSEEEEEETTSEEEEEECCT---TSCCCEEEE
T ss_pred             C--EEEEEEcCCCceeEee-ee-cCCCcc---eEEEEeCC-----CCCCCEEEEecCCCcEEEEecCC---CCceeeEEe
Confidence            8  89999998875  332 22 467777   665 8999     6  89999999999999999988   4  334566


Q ss_pred             cccccCEEEEEEec-------------CCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         186 QGHACPVLGVSFNY-------------DESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       186 ~~h~~~v~~v~~~~-------------~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+|...|.+++|+|             ++.+|++++.|+.|++||+++++
T Consensus       144 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  193 (379)
T 3jrp_A          144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA  193 (379)
T ss_dssp             ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT
T ss_pred             cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC
Confidence            78999999999999             69999999999999999987653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.80  E-value=2.6e-18  Score=151.09  Aligned_cols=147  Identities=16%  Similarity=0.228  Sum_probs=124.8

Q ss_pred             ccccccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCe
Q psy3599          53 NDQLRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAV  114 (223)
Q Consensus        53 ~~~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~  114 (223)
                      ..+.+|.+.|.+++|+|+|+++...                  .+..| ..+|.+++|+       +++.+|++++.++ 
T Consensus         7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~-~~~v~~~~~s-------~~~~~l~~~~~dg-   77 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVT-ETPVRAGKFI-------ARKNWIIVGSDDF-   77 (814)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEEE-------GGGTEEEEEETTS-
T ss_pred             eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecC-CCcEEEEEEe-------CCCCEEEEEeCCC-
Confidence            3445788889999999988766443                  33445 8899999999       9999999999999 


Q ss_pred             EEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCccc-ccceeecccccCE
Q psy3599         115 CILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHK-NAVNKLQGHACPV  192 (223)
Q Consensus       115 ~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~h~~~v  192 (223)
                       .+++||..++..+...  .+|...   +.+ .|+|     ++.++++|+.||.|++||+.+   + .+...+.+|...|
T Consensus        78 -~i~vw~~~~~~~~~~~--~~~~~~---v~~~~~s~-----~~~~l~~~~~dg~i~vw~~~~---~~~~~~~~~~~~~~v  143 (814)
T 3mkq_A           78 -RIRVFNYNTGEKVVDF--EAHPDY---IRSIAVHP-----TKPYVLSGSDDLTVKLWNWEN---NWALEQTFEGHEHFV  143 (814)
T ss_dssp             -EEEEEETTTCCEEEEE--ECCSSC---EEEEEECS-----SSSEEEEEETTSEEEEEEGGG---TSEEEEEEECCSSCE
T ss_pred             -eEEEEECCCCcEEEEE--ecCCCC---EEEEEEeC-----CCCEEEEEcCCCEEEEEECCC---CceEEEEEcCCCCcE
Confidence             8999999988766643  478877   665 8999     799999999999999999998   5 6677888999999


Q ss_pred             EEEEEec-CCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         193 LGVSFNY-DESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       193 ~~v~~~~-~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+++|+| ++..|++++.||.|++||+++++
T Consensus       144 ~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~  174 (814)
T 3mkq_A          144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQST  174 (814)
T ss_dssp             EEEEEETTEEEEEEEEETTSEEEEEETTCSS
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            9999999 78999999999999999997654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.80  E-value=5.7e-18  Score=133.61  Aligned_cols=145  Identities=15%  Similarity=0.197  Sum_probs=118.6

Q ss_pred             cccCCcEEEEEECCCCceeeee--------------------eee--ecCCCCeeEEEEeecccccCCCCeEEEEEeCCC
Q psy3599          56 LRSTGVIVSILCDDLGRLSKGK--------------------RLV--LSQDCPITCLSWRSWISREARDPTLLVNIAANA  113 (223)
Q Consensus        56 ~~~~~~i~~~~~~~~~~~~~~~--------------------~~~--~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~  113 (223)
                      .+|.+.|.++.|+++++++...                    .+.  .| ...|.+++|+       +++.+|++++.++
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~-------~~~~~l~~~~~d~  119 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNR-DNYIRSCKLL-------PDGCTLIVGGEAS  119 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCT-TSBEEEEEEC-------TTSSEEEEEESSS
T ss_pred             ccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCC-CCcEEEEEEc-------CCCCEEEEEcCCC
Confidence            3677788888888877665432                    111  23 7889999999       9999999999999


Q ss_pred             eEEEEEecCCCceEE-eeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccC
Q psy3599         114 VCILKVLDKEGAVQL-KRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACP  191 (223)
Q Consensus       114 ~~~v~i~d~~~~~~~-~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~  191 (223)
                        .+++||..++... ...+ .+|...   +.+ .|+|     ++.++++++.||.|++||+++   ++.+..+..|...
T Consensus       120 --~i~~~d~~~~~~~~~~~~-~~~~~~---i~~~~~~~-----~~~~l~~~~~dg~v~~~d~~~---~~~~~~~~~~~~~  185 (337)
T 1gxr_A          120 --TLSIWDLAAPTPRIKAEL-TSSAPA---CYALAISP-----DSKVCFSCCSDGNIAVWDLHN---QTLVRQFQGHTDG  185 (337)
T ss_dssp             --EEEEEECCCC--EEEEEE-ECSSSC---EEEEEECT-----TSSEEEEEETTSCEEEEETTT---TEEEEEECCCSSC
T ss_pred             --cEEEEECCCCCcceeeec-ccCCCc---eEEEEECC-----CCCEEEEEeCCCcEEEEeCCC---CceeeeeecccCc
Confidence              8999999876522 2233 367666   555 8999     799999999999999999999   8889999999999


Q ss_pred             EEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         192 VLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       192 v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      |.+++|+|++..|++++.|+.|++||+++++
T Consensus       186 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  216 (337)
T 1gxr_A          186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGR  216 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             eEEEEECCCCCEEEEEecCCcEEEEECCCCc
Confidence            9999999999999999999999999998754

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.80  E-value=6.2e-19  Score=139.45  Aligned_cols=123  Identities=19%  Similarity=0.169  Sum_probs=99.8

Q ss_pred             eeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceE-EeeeeeccccCcceeEEE-eeecCcccCCC
Q psy3599          79 LVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQ-LKRKFNVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        79 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~-~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      +..| ..+|++++|+       +++.+|++++.|+  .+++||+.++.. ....+. +|...   +.+ +|+|..   ++
T Consensus         9 ~~~H-~~~V~~v~~s-------~~g~~lasgs~D~--~v~lwd~~~~~~~~~~~l~-gH~~~---V~~v~~~~~~---~~   71 (316)
T 3bg1_A            9 DTSH-EDMIHDAQMD-------YYGTRLATCSSDR--SVKIFDVRNGGQILIADLR-GHEGP---VWQVAWAHPM---YG   71 (316)
T ss_dssp             ------CCEEEEEEC-------GGGCEEEEEETTT--EEEEEEEETTEEEEEEEEE-CCSSC---EEEEEECCGG---GS
T ss_pred             cccc-cCeEEEeeEc-------CCCCEEEEEeCCC--eEEEEEecCCCcEEEEEEc-CCCcc---EEEEEeCCCC---CC
Confidence            3456 8999999999       9999999999999  999999987643 233443 89888   555 787510   37


Q ss_pred             cEEEEecCCCcEEEEEcccCccc--ccceeecccccCEEEEEEecC--CCEEEEEeCCCcEEEeeCCCC
Q psy3599         157 ACVVTGSEDSCVYFLDIQSKEHK--NAVNKLQGHACPVLGVSFNYD--ESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~~~~~--~~~~~~~~h~~~v~~v~~~~~--~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      .+|++|+.|+.|++||+++   +  +.+..+.+|...|.+++|+|+  +.+|++|+.|++|++||++.+
T Consensus        72 ~~l~s~s~D~~v~iWd~~~---~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~  137 (316)
T 3bg1_A           72 NILASCSYDRKVIIWREEN---GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE  137 (316)
T ss_dssp             SCEEEEETTSCEEEECCSS---SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred             CEEEEEECCCEEEEEECCC---CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence            8999999999999999987   5  456678889999999999998  789999999999999998754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.80  E-value=6.4e-18  Score=155.02  Aligned_cols=146  Identities=19%  Similarity=0.300  Sum_probs=126.3

Q ss_pred             ccccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEE
Q psy3599          55 QLRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCI  116 (223)
Q Consensus        55 ~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (223)
                      +.+|.+.|.++.|+|+|+++.+.                  .+..| ...|.+++|+       +++.+|++++.++  .
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h-~~~v~~~~~s-------~~~~~l~s~~~d~--~  680 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH-EDEVLCCAFS-------SDDSYIATCSADK--K  680 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEEC-------TTSSEEEEEETTS--E
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccC-CCCEEEEEEe-------cCCCEEEEEeCCC--e
Confidence            34789999999999998877554                  33445 8899999999       9999999999999  8


Q ss_pred             EEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEE
Q psy3599         117 LKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGV  195 (223)
Q Consensus       117 v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v  195 (223)
                      +++||..++..+.. + .+|...   +.+ .|+|..   ++.++++|+.|+.|++||+.+   ++++..+.+|...|.++
T Consensus       681 v~vwd~~~~~~~~~-~-~~~~~~---v~~~~~~~~~---~~~~l~sg~~d~~v~vwd~~~---~~~~~~~~~h~~~v~~~  749 (1249)
T 3sfz_A          681 VKIWDSATGKLVHT-Y-DEHSEQ---VNCCHFTNKS---NHLLLATGSNDFFLKLWDLNQ---KECRNTMFGHTNSVNHC  749 (1249)
T ss_dssp             EEEEETTTCCEEEE-E-ECCSSC---EEEEEECSSS---SCCEEEEEETTSCEEEEETTS---SSEEEEECCCSSCEEEE
T ss_pred             EEEEECCCCceEEE-E-cCCCCc---EEEEEEecCC---CceEEEEEeCCCeEEEEECCC---cchhheecCCCCCEEEE
Confidence            99999999877664 4 488877   555 898832   356899999999999999999   88999999999999999


Q ss_pred             EEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         196 SFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       196 ~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      +|+|++..+++++.||.|++||++++
T Consensus       750 ~~sp~~~~l~s~s~dg~v~vwd~~~~  775 (1249)
T 3sfz_A          750 RFSPDDELLASCSADGTLRLWDVRSA  775 (1249)
T ss_dssp             EECSSTTEEEEEESSSEEEEEEGGGT
T ss_pred             EEecCCCEEEEEECCCeEEEEeCCCC
Confidence            99999999999999999999998765

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.80  E-value=1.1e-17  Score=136.42  Aligned_cols=147  Identities=12%  Similarity=0.189  Sum_probs=116.8

Q ss_pred             cccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEE
Q psy3599          56 LRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCIL  117 (223)
Q Consensus        56 ~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v  117 (223)
                      .+|.+.|.++.|+|+++++.+.                  .+..| ...|.+++|+       +++.+|++++.++  .+
T Consensus       136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~-------~~~~~l~s~~~d~--~v  205 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH-RATVTDIAII-------DRGRNVLSASLDG--TI  205 (420)
T ss_dssp             TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC-SSCEEEEEEE-------TTTTEEEEEETTS--CE
T ss_pred             ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC-CCcEEEEEEc-------CCCCEEEEEcCCC--cE
Confidence            3688999999999988766443                  34445 8899999999       9999999999999  89


Q ss_pred             EEecCCCceEEeeeeeccccCcceeEEE----------------------eeecCcccCCCcEEEEecCCCcEEEEEccc
Q psy3599         118 KVLDKEGAVQLKRKFNVNHKSSKYQVRS----------------------TFCPIMSFREGACVVTGSEDSCVYFLDIQS  175 (223)
Q Consensus       118 ~i~d~~~~~~~~~~~~~~h~~~~~~i~~----------------------~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~  175 (223)
                      ++||..++..+... . .|......+.+                      .|+|     ++.++++|+.||.|++||+++
T Consensus       206 ~iwd~~~~~~~~~~-~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~i~d~~~  278 (420)
T 3vl1_A          206 RLWECGTGTTIHTF-N-RKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-----YGKYVIAGHVSGVITVHNVFS  278 (420)
T ss_dssp             EEEETTTTEEEEEE-C-BTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-----TTEEEEEEETTSCEEEEETTT
T ss_pred             EEeECCCCceeEEe-e-cCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-----CCCEEEEEcCCCeEEEEECCC
Confidence            99999988766543 2 32211111222                      3456     789999999999999999998


Q ss_pred             Ccccccceeec-ccccCEEEEEEecCCC-EEEEEeCCCcEEEeeCCCCC
Q psy3599         176 KEHKNAVNKLQ-GHACPVLGVSFNYDES-LLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       176 ~~~~~~~~~~~-~h~~~v~~v~~~~~~~-~l~s~s~d~~i~iwd~~~~~  222 (223)
                         ++.+..+. .|...|.+++|+|++. +|++|+.||.|++||+++++
T Consensus       279 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  324 (420)
T 3vl1_A          279 ---KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE  324 (420)
T ss_dssp             ---CCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred             ---CceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence               66666554 5888999999999998 99999999999999998763

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.80  E-value=4.2e-18  Score=135.99  Aligned_cols=117  Identities=9%  Similarity=0.085  Sum_probs=98.9

Q ss_pred             CCCeeEEEEeecccccCC--CCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEE
Q psy3599          84 DCPITCLSWRSWISREAR--DPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVV  160 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~--~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~  160 (223)
                      ..+|.+++|+       |  ++.+|++++.|+  .+++||+.++..+.. +...|...   +.+ +|+|     ++.+++
T Consensus       125 ~~~v~~~~~~-------~~~~~~~l~s~s~dg--~i~~wd~~~~~~~~~-~~~~~~~~---i~~~~~~p-----dg~~la  186 (343)
T 3lrv_A          125 ANEIIYMYGH-------NEVNTEYFIWADNRG--TIGFQSYEDDSQYIV-HSAKSDVE---YSSGVLHK-----DSLLLA  186 (343)
T ss_dssp             SSCEEEEECC-------C---CCEEEEEETTC--CEEEEESSSSCEEEE-ECCCSSCC---CCEEEECT-----TSCEEE
T ss_pred             CCCEEEEEcC-------CCCCCCEEEEEeCCC--cEEEEECCCCcEEEE-EecCCCCc---eEEEEECC-----CCCEEE
Confidence            5789999999       8  999999999999  899999998876543 22133334   555 8999     799999


Q ss_pred             EecCCCcEEEEEcccCcccccc-eeecc-cccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         161 TGSEDSCVYFLDIQSKEHKNAV-NKLQG-HACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       161 sgs~dg~v~iwd~~~~~~~~~~-~~~~~-h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +|+.||.|++||+++   ++.+ ..+.. |...|.+++|+|++.+|++++ |+.|++||+++++
T Consensus       187 sg~~dg~i~iwd~~~---~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~  246 (343)
T 3lrv_A          187 LYSPDGILDVYNLSS---PDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDV  246 (343)
T ss_dssp             EECTTSCEEEEESSC---TTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSST
T ss_pred             EEcCCCEEEEEECCC---CCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCC
Confidence            999999999999999   7777 77888 999999999999999999999 5599999998865

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.80  E-value=4.6e-19  Score=140.20  Aligned_cols=149  Identities=19%  Similarity=0.241  Sum_probs=109.3

Q ss_pred             cccCCcEEEEEECCCCceeeee--------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeE
Q psy3599          56 LRSTGVIVSILCDDLGRLSKGK--------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVC  115 (223)
Q Consensus        56 ~~~~~~i~~~~~~~~~~~~~~~--------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~  115 (223)
                      .+|.+.|.+++|+++|+++.+.                    .+..| ..+|.+++|++     +.++.+|++++.|+  
T Consensus        10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH-~~~V~~v~~~~-----~~~~~~l~s~s~D~--   81 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGH-EGPVWQVAWAH-----PMYGNILASCSYDR--   81 (316)
T ss_dssp             ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECC-SSCEEEEEECC-----GGGSSCEEEEETTS--
T ss_pred             ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCC-CccEEEEEeCC-----CCCCCEEEEEECCC--
Confidence            3577777777777766654332                    24456 88999999981     02488999999999  


Q ss_pred             EEEEecCCCce--EEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCE
Q psy3599         116 ILKVLDKEGAV--QLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPV  192 (223)
Q Consensus       116 ~v~i~d~~~~~--~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v  192 (223)
                      .+++||..++.  .+. .+ .+|...   +.+ +|+|..   ++.+|++|+.|+.|++||++..........+.+|...|
T Consensus        82 ~v~iWd~~~~~~~~~~-~~-~~h~~~---V~~v~~~p~~---~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v  153 (316)
T 3bg1_A           82 KVIIWREENGTWEKSH-EH-AGHDSS---VNSVCWAPHD---YGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGC  153 (316)
T ss_dssp             CEEEECCSSSCCCEEE-EE-CCCSSC---CCEEEECCTT---TCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCB
T ss_pred             EEEEEECCCCcceEEE-Ec-cCCCCc---eEEEEECCCC---CCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCc
Confidence            89999998763  222 33 378887   444 899821   27899999999999999998711012345677899999


Q ss_pred             EEEEEecC-----------------CCEEEEEeCCCcEEEeeCCC
Q psy3599         193 LGVSFNYD-----------------ESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       193 ~~v~~~~~-----------------~~~l~s~s~d~~i~iwd~~~  220 (223)
                      .+++|+|+                 +.+|++|+.|++|++||++.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~  198 (316)
T 3bg1_A          154 NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE  198 (316)
T ss_dssp             CCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECT
T ss_pred             ceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCC
Confidence            99999997                 46899999999999999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.79  E-value=5e-18  Score=137.32  Aligned_cols=117  Identities=17%  Similarity=0.197  Sum_probs=102.2

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCC---CeEEEEEecCCCceEEeeeeecc-------------ccCcceeEEE-e
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAAN---AVCILKVLDKEGAVQLKRKFNVN-------------HKSSKYQVRS-T  146 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~---~~~~v~i~d~~~~~~~~~~~~~~-------------h~~~~~~i~~-~  146 (223)
                      ..+|.+++|+       +++.+|++++.+   +  .+++||..++..+...  .+             |...   +.+ .
T Consensus       233 ~~~i~~i~~~-------~~~~~l~~~~~d~~~g--~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---v~~~~  298 (397)
T 1sq9_A          233 SNSIRSVKFS-------PQGSLLAIAHDSNSFG--CITLYETEFGERIGSL--SVPTHSSQASLGEFAHSSW---VMSLS  298 (397)
T ss_dssp             CCCEEEEEEC-------SSTTEEEEEEEETTEE--EEEEEETTTCCEEEEE--CBC--------CCBSBSSC---EEEEE
T ss_pred             CCccceEEEC-------CCCCEEEEEecCCCCc--eEEEEECCCCccccee--ccCcccccccccccccCCc---EEEEE
Confidence            6789999999       899999999987   7  8999999888766543  35             7777   555 8


Q ss_pred             eecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeec------cc---------------ccCEEEEEEecCC----
Q psy3599         147 FCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQ------GH---------------ACPVLGVSFNYDE----  201 (223)
Q Consensus       147 ~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~------~h---------------~~~v~~v~~~~~~----  201 (223)
                      |+|     ++.+|++|+.||.|++||+++   ++++..+.      +|               ...|.+++|+|++    
T Consensus       299 ~~~-----~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~  370 (397)
T 1sq9_A          299 FND-----SGETLCSAGWDGKLRFWDVKT---KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSG  370 (397)
T ss_dssp             ECS-----SSSEEEEEETTSEEEEEETTT---TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBS
T ss_pred             ECC-----CCCEEEEEeCCCeEEEEEcCC---CceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccc
Confidence            999     799999999999999999999   88888888      78               8999999999998    


Q ss_pred             ------CEEEEEeCCCcEEEeeCCCCC
Q psy3599         202 ------SLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       202 ------~~l~s~s~d~~i~iwd~~~~~  222 (223)
                            .+|++++.||.|++||+++++
T Consensus       371 ~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          371 MGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ccccccceEEEecCCCcEEEEEcCCCC
Confidence                  799999999999999998864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.79  E-value=6.8e-18  Score=136.21  Aligned_cols=147  Identities=10%  Similarity=0.143  Sum_probs=108.9

Q ss_pred             cCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEE
Q psy3599          58 STGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKV  119 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i  119 (223)
                      +...+..++|+|+|+++...                  .....+...|.+++|+       |++.+|++++++.  .+ +
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fs-------pdg~~l~s~s~~~--~~-~  201 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFS-------TDGKVVAYITGSS--LE-V  201 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEEC-------TTSSEEEEECSSC--EE-E
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEc-------cCCceEEecccee--EE-E
Confidence            34568888999988875422                  1122336789999999       9999999999888  44 4


Q ss_pred             ecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCC----cEEEEEcccCcc-cccceeecccccCEE
Q psy3599         120 LDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDS----CVYFLDIQSKEH-KNAVNKLQGHACPVL  193 (223)
Q Consensus       120 ~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg----~v~iwd~~~~~~-~~~~~~~~~h~~~v~  193 (223)
                      |+..++..+......+|...   +.+ .|+|     ++..+++++.|+    .+++|++..... ......+.+|...|+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~---v~~v~fsp-----dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~  273 (365)
T 4h5i_A          202 ISTVTGSCIARKTDFDKNWS---LSKINFIA-----DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGIT  273 (365)
T ss_dssp             EETTTCCEEEEECCCCTTEE---EEEEEEEE-----TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEE
T ss_pred             EEeccCcceeeeecCCCCCC---EEEEEEcC-----CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeE
Confidence            44444544433322366655   555 8999     799999999887    578888876110 112356778999999


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         194 GVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       194 ~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +++|+|+|.+||+|+.|++|+|||+++++
T Consensus       274 ~~~~Spdg~~lasgs~D~~V~iwd~~~~~  302 (365)
T 4h5i_A          274 SMDVDMKGELAVLASNDNSIALVKLKDLS  302 (365)
T ss_dssp             EEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred             eEEECCCCCceEEEcCCCEEEEEECCCCc
Confidence            99999999999999999999999998865

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.79  E-value=1e-18  Score=147.35  Aligned_cols=145  Identities=12%  Similarity=0.149  Sum_probs=113.4

Q ss_pred             cccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEE--EEeecccccCCCC-eEEEEEeCCCe
Q psy3599          56 LRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCL--SWRSWISREARDP-TLLVNIAANAV  114 (223)
Q Consensus        56 ~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l--~~~~~~~~~~~~~-~~l~~~~~~~~  114 (223)
                      .+|.+.|.++.|++.+.+....                  .+..| ..+|.++  .|+       +++ .+|++++.|+ 
T Consensus       263 ~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H-~~~V~sv~~~~s-------~~g~~~laS~S~D~-  333 (524)
T 2j04_B          263 SLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVH-DSYILSVSTAYS-------DFEDTVVSTVAVDG-  333 (524)
T ss_dssp             CCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECS-SSCEEEEEEECC-------TTSCCEEEEEETTS-
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecc-cccEEEEEEEcC-------CCCCeEEEEeccCC-
Confidence            3567788888887644332111                  24455 7899999  466       777 8999999999 


Q ss_pred             EEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEE
Q psy3599         115 CILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLG  194 (223)
Q Consensus       115 ~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~  194 (223)
                       .+++||+.++..+...  .+|.........+|+|     ++..+++++.|+.|++||++.   +.++..+.+|...|++
T Consensus       334 -tvklWD~~~~~~~~~~--~~~~~~~~v~~v~fsp-----~~~~l~s~~~d~tv~lwd~~~---~~~~~~l~gH~~~V~s  402 (524)
T 2j04_B          334 -YFYIFNPKDIATTKTT--VSRFRGSNLVPVVYCP-----QIYSYIYSDGASSLRAVPSRA---AFAVHPLVSRETTITA  402 (524)
T ss_dssp             -EEEEECGGGHHHHCEE--EEECSCCSCCCEEEET-----TTTEEEEECSSSEEEEEETTC---TTCCEEEEECSSCEEE
T ss_pred             -eEEEEECCCCCccccc--ccccccCcccceEeCC-----CcCeEEEeCCCCcEEEEECcc---cccceeeecCCCceEE
Confidence             9999999877554432  2554321102337999     788999999999999999999   8888889999999999


Q ss_pred             EEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         195 VSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       195 v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      ++|+|++..|++|+.|++|++||+..
T Consensus       403 va~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          403 IGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             EECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             EEeCCCCCeEEEEECCCEEEEEechH
Confidence            99999999999999999999999754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.79  E-value=8.5e-18  Score=146.11  Aligned_cols=145  Identities=17%  Similarity=0.218  Sum_probs=117.1

Q ss_pred             ccccCCcEEEEEECCC-Cceeeee-----------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEe
Q psy3599          55 QLRSTGVIVSILCDDL-GRLSKGK-----------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIA  110 (223)
Q Consensus        55 ~~~~~~~i~~~~~~~~-~~~~~~~-----------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~  110 (223)
                      +.+|.+.|.++.++++ ++++.+.                       .+..| ...|.+++|+       +++.+|++++
T Consensus       378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h-~~~v~~v~~s-------~~g~~l~sgs  449 (694)
T 3dm0_A          378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH-SHFVEDVVLS-------SDGQFALSGS  449 (694)
T ss_dssp             EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECC-SSCEEEEEEC-------TTSSEEEEEE
T ss_pred             cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCC-CCcEEEEEEC-------CCCCEEEEEe
Confidence            3478899999998874 3444332                       23445 7899999999       9999999999


Q ss_pred             CCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCccccc---ceeec
Q psy3599         111 ANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNA---VNKLQ  186 (223)
Q Consensus       111 ~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~---~~~~~  186 (223)
                      .|+  .+++||+.++..+.. + .+|...   +.+ +|+|     ++.+|++|+.|+.|++||...   ...   .....
T Consensus       450 ~Dg--~v~vwd~~~~~~~~~-~-~~h~~~---v~~~~~s~-----~~~~l~s~s~D~~i~iwd~~~---~~~~~~~~~~~  514 (694)
T 3dm0_A          450 WDG--ELRLWDLAAGVSTRR-F-VGHTKD---VLSVAFSL-----DNRQIVSASRDRTIKLWNTLG---ECKYTISEGGE  514 (694)
T ss_dssp             TTS--EEEEEETTTTEEEEE-E-ECCSSC---EEEEEECT-----TSSCEEEEETTSCEEEECTTS---CEEEEECSSTT
T ss_pred             CCC--cEEEEECCCCcceeE-E-eCCCCC---EEEEEEeC-----CCCEEEEEeCCCEEEEEECCC---CcceeeccCCC
Confidence            999  999999998876654 3 489888   555 8999     799999999999999999865   322   22235


Q ss_pred             ccccCEEEEEEecCC--CEEEEEeCCCcEEEeeCCCCC
Q psy3599         187 GHACPVLGVSFNYDE--SLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       187 ~h~~~v~~v~~~~~~--~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +|...|.+++|+|++  ..+++++.|++|++||+++++
T Consensus       515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~  552 (694)
T 3dm0_A          515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK  552 (694)
T ss_dssp             SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC
T ss_pred             CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc
Confidence            789999999999986  689999999999999998754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.79  E-value=6.3e-18  Score=133.40  Aligned_cols=124  Identities=15%  Similarity=0.171  Sum_probs=103.9

Q ss_pred             eeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCce---EEeeeeeccccCcceeEEE-eeecCcccC
Q psy3599          79 LVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAV---QLKRKFNVNHKSSKYQVRS-TFCPIMSFR  154 (223)
Q Consensus        79 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~---~~~~~~~~~h~~~~~~i~~-~~s~~~~~~  154 (223)
                      +.+| ...|++++|+       +++.+|++++.++  .+++||..++.   .....+ .+|...   +.+ +|+|..   
T Consensus         7 ~~gH-~~~v~~~~~~-------~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~-~~~~~~---v~~~~~~~~~---   69 (351)
T 3f3f_A            7 DSGH-DDLVHDVVYD-------FYGRHVATCSSDQ--HIKVFKLDKDTSNWELSDSW-RAHDSS---IVAIDWASPE---   69 (351)
T ss_dssp             ECCC-SSCEEEEEEC-------SSSSEEEEEETTS--EEEEEEECSSSCCEEEEEEE-ECCSSC---EEEEEECCGG---
T ss_pred             Cccc-ccceeEEEEc-------CCCCEEEEeeCCC--eEEEEECCCCCCcceeccee-ccCCCc---EEEEEEcCCC---
Confidence            4566 8999999999       9999999999999  89999987652   223333 378887   555 898821   


Q ss_pred             CCcEEEEecCCCcEEEEEcccCccc---------ccceeecccccCEEEEEEecC--CCEEEEEeCCCcEEEeeCCCCC
Q psy3599         155 EGACVVTGSEDSCVYFLDIQSKEHK---------NAVNKLQGHACPVLGVSFNYD--ESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       155 ~~~~l~sgs~dg~v~iwd~~~~~~~---------~~~~~~~~h~~~v~~v~~~~~--~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ++.+|++|+.||.|++||++.   +         +++..+.+|...|.+++|+|+  +.+|++++.||.|++||+++++
T Consensus        70 d~~~l~s~~~dg~v~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~  145 (351)
T 3f3f_A           70 YGRIIASASYDKTVKLWEEDP---DQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS  145 (351)
T ss_dssp             GCSEEEEEETTSCEEEEEECT---TSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred             CCCEEEEEcCCCeEEEEecCC---CcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH
Confidence            288999999999999999987   4         457788899999999999999  9999999999999999998764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.79  E-value=1.8e-17  Score=131.11  Aligned_cols=149  Identities=15%  Similarity=0.223  Sum_probs=120.2

Q ss_pred             ccccCCcEEEEEECCCCceeeee-----------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEE
Q psy3599          55 QLRSTGVIVSILCDDLGRLSKGK-----------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCIL  117 (223)
Q Consensus        55 ~~~~~~~i~~~~~~~~~~~~~~~-----------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v  117 (223)
                      +.+|.+.|.++.|+++|+++.+.                 .........+..+.++       +++.+|++++.|+  .+
T Consensus        82 l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~s~s~d~--~~  152 (340)
T 4aow_A           82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS-------SDNRQIVSGSRDK--TI  152 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-------TTSSCEEEEETTS--CE
T ss_pred             EeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEe-------ecCccceeecCCC--eE
Confidence            34788999999999998877543                 1111225677788888       8899999999998  89


Q ss_pred             EEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEE
Q psy3599         118 KVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVS  196 (223)
Q Consensus       118 ~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~  196 (223)
                      ++||........... .+|...   +.+ .|++..   ...++++++.|+.|++||+++   ++++..+.+|...|.+++
T Consensus       153 ~~~d~~~~~~~~~~~-~~~~~~---v~~~~~~~~~---~~~~~~s~~~d~~i~i~d~~~---~~~~~~~~~h~~~v~~~~  222 (340)
T 4aow_A          153 KLWNTLGVCKYTVQD-ESHSEW---VSCVRFSPNS---SNPIIVSCGWDKLVKVWNLAN---CKLKTNHIGHTGYLNTVT  222 (340)
T ss_dssp             EEECTTSCEEEEECS-SSCSSC---EEEEEECSCS---SSCEEEEEETTSCEEEEETTT---TEEEEEECCCSSCEEEEE
T ss_pred             EEEEeCCCceEEEEe-ccccCc---ccceEEccCC---CCcEEEEEcCCCEEEEEECCC---CceeeEecCCCCcEEEEE
Confidence            999988765544333 477777   444 676631   356889999999999999999   889999999999999999


Q ss_pred             EecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         197 FNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       197 ~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      |+|++.+|++|+.|+.|++||+++.+
T Consensus       223 ~s~~~~~l~s~s~Dg~i~iwd~~~~~  248 (340)
T 4aow_A          223 VSPDGSLCASGGKDGQAMLWDLNEGK  248 (340)
T ss_dssp             ECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred             ECCCCCEEEEEeCCCeEEEEEeccCc
Confidence            99999999999999999999998754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.79  E-value=2.2e-18  Score=141.99  Aligned_cols=145  Identities=19%  Similarity=0.185  Sum_probs=113.0

Q ss_pred             cccCCcEEEEEECC-CCceeeee-----------------eeeecC--CCCeeEEEEeecccccCCCCeEEEEEeCCCeE
Q psy3599          56 LRSTGVIVSILCDD-LGRLSKGK-----------------RLVLSQ--DCPITCLSWRSWISREARDPTLLVNIAANAVC  115 (223)
Q Consensus        56 ~~~~~~i~~~~~~~-~~~~~~~~-----------------~~~~~~--~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~  115 (223)
                      .+|.+.|.++.|+| ++.++.+.                 .+..++  ...+.+++|+       +++.+|++++.++  
T Consensus       161 ~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~g~~dg--  231 (435)
T 4e54_B          161 IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVS-------ASSRMVVTGDNVG--  231 (435)
T ss_dssp             CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEE-------TTTTEEEEECSSS--
T ss_pred             cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEEC-------CCCCEEEEEeCCC--
Confidence            36888999999997 56555433                 111111  3357889999       9999999999999  


Q ss_pred             EEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccc---eeecccccC
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAV---NKLQGHACP  191 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~---~~~~~h~~~  191 (223)
                      .+++||..+. .+. .+ .+|...   +.+ .|+|.    ...++++|+.|+.|++||+++   .+..   ....+|...
T Consensus       232 ~i~~wd~~~~-~~~-~~-~~h~~~---v~~v~~~p~----~~~~~~s~s~d~~v~iwd~~~---~~~~~~~~~~~~h~~~  298 (435)
T 4e54_B          232 NVILLNMDGK-ELW-NL-RMHKKK---VTHVALNPC----CDWFLATASVDQTVKIWDLRQ---VRGKASFLYSLPHRHP  298 (435)
T ss_dssp             BEEEEESSSC-BCC-CS-BCCSSC---EEEEEECTT----CSSEEEEEETTSBCCEEETTT---CCSSSCCSBCCBCSSC
T ss_pred             cEeeeccCcc-eeE-EE-ecccce---EEeeeecCC----CceEEEEecCcceeeEEeccc---ccccceEEEeeecccc
Confidence            8999998754 333 33 488887   555 89994    356899999999999999987   4433   344679999


Q ss_pred             EEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         192 VLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       192 v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      |.+++|+|++.+|++++.||.|++||+++++
T Consensus       299 v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~  329 (435)
T 4e54_B          299 VNAACFSPDGARLLTTDQKSEIRVYSASQWD  329 (435)
T ss_dssp             EEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred             ccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence            9999999999999999999999999998754

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.79  E-value=2.3e-17  Score=129.37  Aligned_cols=145  Identities=14%  Similarity=0.251  Sum_probs=107.9

Q ss_pred             ccCCcEEEEEECCCCceeeee----------------------eeeecCCCCeeEEEEeecccccCCCCeEEE--EEeCC
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK----------------------RLVLSQDCPITCLSWRSWISREARDPTLLV--NIAAN  112 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~----------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~--~~~~~  112 (223)
                      +|.+.+..+.+.++++.+.+.                      ....+ ...|.++.++      +.++.++.  +++.+
T Consensus       148 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~------~~~~~~~~~~~~~~~  220 (318)
T 4ggc_A          148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH-QGAVKAVAWC------PWQSNVLATGGGTSD  220 (318)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCC-CSCEEEEEEC------TTSTTEEEEEECTTT
T ss_pred             CccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeeccc-CCceEEEEec------CCCCcEEEEEecCCC
Confidence            566677777777766655332                      11122 5678899998      23344443  44566


Q ss_pred             CeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEE--ecCCCcEEEEEcccCcccccceeeccccc
Q psy3599         113 AVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVT--GSEDSCVYFLDIQSKEHKNAVNKLQGHAC  190 (223)
Q Consensus       113 ~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~s--gs~dg~v~iwd~~~~~~~~~~~~~~~h~~  190 (223)
                      +  .+++||.........   ..+....  ....|+|     ++..+++  |+.|+.|++||+++   ++++..+++|..
T Consensus       221 ~--~i~lwd~~~~~~~~~---~~~~~~v--~~~~~~~-----~~~~~~~~sg~~d~~i~iwd~~~---~~~~~~l~gH~~  285 (318)
T 4ggc_A          221 R--HIRIWNVCSGACLSA---VDAHSQV--CSILWSP-----HYKELISGHGFAQNQLVIWKYPT---MAKVAELKGHTS  285 (318)
T ss_dssp             C--EEEEEETTTCCEEEE---EECSSCE--EEEEEET-----TTTEEEEEECTTTCCEEEEETTT---CCEEEEECCCSS
T ss_pred             C--EEEEEeccccccccc---ccceeee--eeeeecc-----cccceEEEEEcCCCEEEEEECCC---CcEEEEEcCCCC
Confidence            6  899999987765543   2445553  3347888     4665554  45899999999999   899999999999


Q ss_pred             CEEEEEEecCCCEEEEEeCCCcEEEeeCCCCCC
Q psy3599         191 PVLGVSFNYDESLLATSDYQGLIILWSREKHEP  223 (223)
Q Consensus       191 ~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~  223 (223)
                      .|++++|+|++.+|+|||.||+|+|||+...+|
T Consensus       286 ~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~dP  318 (318)
T 4ggc_A          286 RVLSLTMSPDGATVASAAADETLRLWRCFELDP  318 (318)
T ss_dssp             CEEEEEECTTSSCEEEEETTTEEEEECCSCCCC
T ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEECCCCCC
Confidence            999999999999999999999999999998877

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.78  E-value=8.6e-18  Score=136.81  Aligned_cols=146  Identities=15%  Similarity=0.210  Sum_probs=119.7

Q ss_pred             cccCCcEEEEEECC-CCceeeee-------------------------eeeecCCCCeeEEEEeecccccCCCC-eEEEE
Q psy3599          56 LRSTGVIVSILCDD-LGRLSKGK-------------------------RLVLSQDCPITCLSWRSWISREARDP-TLLVN  108 (223)
Q Consensus        56 ~~~~~~i~~~~~~~-~~~~~~~~-------------------------~~~~~~~~~i~~l~~~~~~~~~~~~~-~~l~~  108 (223)
                      .+|.+.|.++.|+| ++.++.+.                         .+..| ...|.+++|+       +++ .+|++
T Consensus        78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~-------p~~~~~l~s  149 (402)
T 2aq5_A           78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH-TKRVGIVAWH-------PTAQNVLLS  149 (402)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC-SSCEEEEEEC-------SSBTTEEEE
T ss_pred             ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC-CCeEEEEEEC-------cCCCCEEEE
Confidence            46788888888888 66665433                         22335 7899999999       887 69999


Q ss_pred             EeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceee-c
Q psy3599         109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKL-Q  186 (223)
Q Consensus       109 ~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~  186 (223)
                      ++.|+  .+++||+.++..+......+|...   +.+ +|+|     ++.+|++++.||.|++||+++   ++.+..+ .
T Consensus       150 ~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~  216 (402)
T 2aq5_A          150 AGCDN--VILVWDVGTGAAVLTLGPDVHPDT---IYSVDWSR-----DGALICTSCRDKRVRVIEPRK---GTVVAEKDR  216 (402)
T ss_dssp             EETTS--CEEEEETTTTEEEEEECTTTCCSC---EEEEEECT-----TSSCEEEEETTSEEEEEETTT---TEEEEEEEC
T ss_pred             EcCCC--EEEEEECCCCCccEEEecCCCCCc---eEEEEECC-----CCCEEEEEecCCcEEEEeCCC---Cceeeeecc
Confidence            99988  899999998876654311267777   555 8999     799999999999999999999   8888888 7


Q ss_pred             ccccC-EEEEEEecCCCEEEEE---eCCCcEEEeeCCCCC
Q psy3599         187 GHACP-VLGVSFNYDESLLATS---DYQGLIILWSREKHE  222 (223)
Q Consensus       187 ~h~~~-v~~v~~~~~~~~l~s~---s~d~~i~iwd~~~~~  222 (223)
                      +|... +.++.|+|++.+|++|   +.|+.|++||+++++
T Consensus       217 ~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~  256 (402)
T 2aq5_A          217 PHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE  256 (402)
T ss_dssp             SSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred             CCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence            88775 8999999999999999   789999999998753

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.78  E-value=1.8e-17  Score=132.19  Aligned_cols=99  Identities=19%  Similarity=0.333  Sum_probs=78.1

Q ss_pred             cccCCcEEEEEECCC---Cceeeee--------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCC
Q psy3599          56 LRSTGVIVSILCDDL---GRLSKGK--------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAAN  112 (223)
Q Consensus        56 ~~~~~~i~~~~~~~~---~~~~~~~--------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~  112 (223)
                      .+|.+.|.++.|+|+   |+++.+.                    .+..| ..+|.+++|+       +++.+|++++.+
T Consensus        36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h-~~~v~~~~~~-------~~~~~l~s~~~d  107 (368)
T 3mmy_A           36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMH-TGPVLDVCWS-------DDGSKVFTASCD  107 (368)
T ss_dssp             SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEEC-SSCEEEEEEC-------TTSSEEEEEETT
T ss_pred             cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccc-cCCEEEEEEC-------cCCCEEEEEcCC
Confidence            367788888888886   4655332                    23445 8899999999       999999999999


Q ss_pred             CeEEEEEecCCCceEEeeeeeccccCcceeEEE-ee--ecCcccCCCcEEEEecCCCcEEEEEccc
Q psy3599         113 AVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TF--CPIMSFREGACVVTGSEDSCVYFLDIQS  175 (223)
Q Consensus       113 ~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~--s~~~~~~~~~~l~sgs~dg~v~iwd~~~  175 (223)
                      +  .+++||..++..+..   .+|...   +.+ .|  +|     ++.++++++.||.|++||+++
T Consensus       108 g--~v~iwd~~~~~~~~~---~~~~~~---v~~~~~~~~~-----~~~~l~~~~~dg~i~vwd~~~  160 (368)
T 3mmy_A          108 K--TAKMWDLSSNQAIQI---AQHDAP---VKTIHWIKAP-----NYSCVMTGSWDKTLKFWDTRS  160 (368)
T ss_dssp             S--EEEEEETTTTEEEEE---EECSSC---EEEEEEEECS-----SCEEEEEEETTSEEEEECSSC
T ss_pred             C--cEEEEEcCCCCceee---ccccCc---eEEEEEEeCC-----CCCEEEEccCCCcEEEEECCC
Confidence            9  999999998876653   478777   555 77  66     688899999999999999765

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.78  E-value=1.4e-17  Score=136.70  Aligned_cols=148  Identities=15%  Similarity=0.146  Sum_probs=114.9

Q ss_pred             cccCCcEEEEEECC-CCceeeee----------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCC
Q psy3599          56 LRSTGVIVSILCDD-LGRLSKGK----------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAAN  112 (223)
Q Consensus        56 ~~~~~~i~~~~~~~-~~~~~~~~----------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~  112 (223)
                      .+|.+.|.+++|+| +++++.+.                      .....+..+|.+++|+       +++.+|++++.|
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~-------~~~~~l~s~s~d  132 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMI-------PNFDAFAVSSKD  132 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEEC-------TTSSEEEEEETT
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEe-------CCCCEEEEEeCC
Confidence            35788999999999 88776543                      1121338899999999       899999999999


Q ss_pred             CeEEEEEecCC---CceEEeee-------eec-c--ccCcceeEEEe--eecCcccCCCcEEEEecCCCcEEEEEcccCc
Q psy3599         113 AVCILKVLDKE---GAVQLKRK-------FNV-N--HKSSKYQVRST--FCPIMSFREGACVVTGSEDSCVYFLDIQSKE  177 (223)
Q Consensus       113 ~~~~v~i~d~~---~~~~~~~~-------~~~-~--h~~~~~~i~~~--~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~  177 (223)
                      +  .+++||+.   .+..+...       +.. .  +....  +...  +++     ++.++++|+.|+.|++||+++  
T Consensus       133 g--~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~--  201 (437)
T 3gre_A          133 G--QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYA--VRMRAFVNE-----EKSLLVALTNLSRVIIFDIRT--  201 (437)
T ss_dssp             S--EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCE--EEEEEEECS-----SCEEEEEEETTSEEEEEETTT--
T ss_pred             C--EEEEEEeccccCCceeeccccceeEEEEccCcccccCc--eEEEEEEcC-----CCCEEEEEeCCCeEEEEeCCC--
Confidence            9  89999984   33222211       000 0  22232  2223  455     789999999999999999999  


Q ss_pred             ccccceeecc--cccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         178 HKNAVNKLQG--HACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       178 ~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                       ++++..+.+  |...|.+++|+|++.+|++|+.||.|++||+++++
T Consensus       202 -~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  247 (437)
T 3gre_A          202 -LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV  247 (437)
T ss_dssp             -CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred             -CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc
Confidence             888998888  88999999999999999999999999999998754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.78  E-value=1.1e-17  Score=134.01  Aligned_cols=145  Identities=13%  Similarity=0.125  Sum_probs=114.7

Q ss_pred             ccCCcEEEEEECCCCceeeee--------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK--------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCI  116 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~--------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (223)
                      +|.+.|.++.|+++++++.+.                    .+..| ...|.+++|+       +++.+|++++.++  .
T Consensus        50 ~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~~-------~~~~~l~~~~~d~--~  119 (372)
T 1k8k_C           50 EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI-NRAARCVRWA-------PNEKKFAVGSGSR--V  119 (372)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCC-SSCEEEEEEC-------TTSSEEEEEETTS--S
T ss_pred             CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecC-CCceeEEEEC-------CCCCEEEEEeCCC--E
Confidence            566777777777766655332                    11223 7789999999       9999999999888  7


Q ss_pred             EEEecCCCceE--EeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcc------------------c
Q psy3599         117 LKVLDKEGAVQ--LKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQ------------------S  175 (223)
Q Consensus       117 v~i~d~~~~~~--~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~------------------~  175 (223)
                      +++||...+..  ....+..+|...   +.+ .|+|     ++.++++|+.||.|++||++                  .
T Consensus       120 v~i~d~~~~~~~~~~~~~~~~~~~~---i~~~~~~~-----~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~  191 (372)
T 1k8k_C          120 ISICYFEQENDWWVCKHIKKPIRST---VLSLDWHP-----NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPF  191 (372)
T ss_dssp             EEEEEEETTTTEEEEEEECTTCCSC---EEEEEECT-----TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCT
T ss_pred             EEEEEecCCCcceeeeeeecccCCC---eeEEEEcC-----CCCEEEEEcCCCCEEEEEcccccccccccccccccccch
Confidence            89999876542  111222367666   555 8999     79999999999999999964                  4


Q ss_pred             CcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         176 KEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       176 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                         ++++..+.+|...|.+++|+|++.+|++++.|+.|++||+++++
T Consensus       192 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  235 (372)
T 1k8k_C          192 ---GELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM  235 (372)
T ss_dssp             ---TCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred             ---hhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence               67788888999999999999999999999999999999998765

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.78  E-value=1.1e-17  Score=133.44  Aligned_cols=122  Identities=18%  Similarity=0.303  Sum_probs=104.7

Q ss_pred             eeeecCCCCeeEEEEeecccccCCC---CeEEEEEeCCCeEEEEEecCCC-ceEEeeeeeccccCcceeEEE-eeecCcc
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARD---PTLLVNIAANAVCILKVLDKEG-AVQLKRKFNVNHKSSKYQVRS-TFCPIMS  152 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~---~~~l~~~~~~~~~~v~i~d~~~-~~~~~~~~~~~h~~~~~~i~~-~~s~~~~  152 (223)
                      .+..| ...|++++|+       ++   +.+|++++.++  .+++||..+ +..+...+. +|...   +.+ .|+|   
T Consensus        34 ~~~~h-~~~v~~~~~~-------~~~~~g~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~-~h~~~---v~~~~~~~---   96 (368)
T 3mmy_A           34 VTSSP-DDSIGCLSFS-------PPTLPGNFLIAGSWAN--DVRCWEVQDSGQTIPKAQQ-MHTGP---VLDVCWSD---   96 (368)
T ss_dssp             CSSCC-SSCEEEEEEC-------CTTSSSEEEEEEETTS--EEEEEEECTTSCEEEEEEE-ECSSC---EEEEEECT---
T ss_pred             eccCC-CCceEEEEEc-------CCCCCceEEEEECCCC--cEEEEEcCCCCceeEEEec-cccCC---EEEEEECc---
Confidence            55666 8999999999       77   69999999999  899999986 555544553 88888   555 8999   


Q ss_pred             cCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEE--ecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         153 FREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSF--NYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       153 ~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                        ++.+|++|+.||.|++||+.+   ++.+. +..|...|.++.|  +|++.+|++++.|+.|++||+++++
T Consensus        97 --~~~~l~s~~~dg~v~iwd~~~---~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  162 (368)
T 3mmy_A           97 --DGSKVFTASCDKTAKMWDLSS---NQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN  162 (368)
T ss_dssp             --TSSEEEEEETTSEEEEEETTT---TEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred             --CCCEEEEEcCCCcEEEEEcCC---CCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence              799999999999999999998   66555 5569999999999  8899999999999999999998765

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.77  E-value=1.5e-17  Score=136.59  Aligned_cols=118  Identities=12%  Similarity=0.184  Sum_probs=94.6

Q ss_pred             CCeeEEEEeecccccCCCC--eEEEEEeCCCeEEEEEecCCCceEEe---------------------------------
Q psy3599          85 CPITCLSWRSWISREARDP--TLLVNIAANAVCILKVLDKEGAVQLK---------------------------------  129 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~--~~l~~~~~~~~~~v~i~d~~~~~~~~---------------------------------  129 (223)
                      .+|++++|+       +++  .+|++++.|+  .+++|+..++....                                 
T Consensus        94 ~~V~~l~~~-------~~~~~~~l~s~s~d~--~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  164 (447)
T 3dw8_B           94 EKINKIRWL-------PQKNAAQFLLSTNDK--TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMV  164 (447)
T ss_dssp             CCCCEEEEC-------CCCSSSEEEEEECSS--CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEE
T ss_pred             CceEEEEEc-------CCCCcceEEEeCCCC--eEEEEecccccCCcceecccCccccccCcccccceEeccccchheee
Confidence            789999999       777  7888889888  89999987643311                                 


Q ss_pred             -----eeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccce-------eecccccCEEEEE
Q psy3599         130 -----RKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVN-------KLQGHACPVLGVS  196 (223)
Q Consensus       130 -----~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-------~~~~h~~~v~~v~  196 (223)
                           ..+..+|...   +.+ +|+|     ++.+|++| .|+.|++||++..  ..++.       .+.+|...|.+++
T Consensus       165 ~~~~~~~~~~~h~~~---v~~~~~~~-----~~~~l~s~-~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~  233 (447)
T 3dw8_B          165 EASPRRIFANAHTYH---INSISINS-----DYETYLSA-DDLRINLWHLEIT--DRSFNIVDIKPANMEELTEVITAAE  233 (447)
T ss_dssp             EEEEEEEECSCCSSC---CCEEEECT-----TSSEEEEE-CSSEEEEEETTEE--EEEEEEEECCCSSGGGCCCCEEEEE
T ss_pred             eccceEEeccCCCcc---eEEEEEcC-----CCCEEEEe-CCCeEEEEECCCC--CceeeeeecccccccccCcceEEEE
Confidence                 0111367777   444 8999     79999998 7999999999941  34443       4678999999999


Q ss_pred             EecCC-CEEEEEeCCCcEEEeeCCCCC
Q psy3599         197 FNYDE-SLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       197 ~~~~~-~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      |+|++ .+|++|+.||.|++||+++++
T Consensus       234 ~~p~~~~~l~s~~~dg~i~iwd~~~~~  260 (447)
T 3dw8_B          234 FHPNSCNTFVYSSSKGTIRLCDMRASA  260 (447)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred             ECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence            99998 999999999999999998765

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.77  E-value=3e-17  Score=133.26  Aligned_cols=139  Identities=12%  Similarity=0.104  Sum_probs=117.0

Q ss_pred             ccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK  118 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~  118 (223)
                      .|.+.|..+.|+++++.+.+.                  .+..| ...|.++.|+       +++ +|++++.++  .++
T Consensus       245 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~-------~~~-~l~~~~~d~--~i~  313 (425)
T 1r5m_A          245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH-SQSIVSASWV-------GDD-KVISCSMDG--SVR  313 (425)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC-SSCEEEEEEE-------TTT-EEEEEETTS--EEE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC-CccEEEEEEC-------CCC-EEEEEeCCC--cEE
Confidence            577888888998877665433                  23334 7899999999       888 889999999  899


Q ss_pred             EecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccc-----------------
Q psy3599         119 VLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKN-----------------  180 (223)
Q Consensus       119 i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~-----------------  180 (223)
                      +||..++..+.. + ..|...   +.+ .|+|     ++.+|++++.||.|++||+.+   .+                 
T Consensus       314 i~d~~~~~~~~~-~-~~~~~~---i~~~~~s~-----~~~~l~~~~~dg~i~i~~~~~---~~~~~~~~~~~~~~~~~~~  380 (425)
T 1r5m_A          314 LWSLKQNTLLAL-S-IVDGVP---IFAGRISQ-----DGQKYAVAFMDGQVNVYDLKK---LNSKSRSLYGNRDGILNPL  380 (425)
T ss_dssp             EEETTTTEEEEE-E-ECTTCC---EEEEEECT-----TSSEEEEEETTSCEEEEECHH---HHC--------------CE
T ss_pred             EEECCCCcEeEe-c-ccCCcc---EEEEEEcC-----CCCEEEEEECCCeEEEEECCC---CccceeeeecccccccCcc
Confidence            999998876654 3 367666   555 8999     799999999999999999998   77                 


Q ss_pred             ---cceeeccccc--CEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         181 ---AVNKLQGHAC--PVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       181 ---~~~~~~~h~~--~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                         ++..+.+|..  .|.+++|+|++.+|++++.||.|++||++
T Consensus       381 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          381 PIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             ECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             cchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence               7888999976  99999999999999999999999999986

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.77  E-value=3.1e-17  Score=131.29  Aligned_cols=121  Identities=15%  Similarity=0.179  Sum_probs=99.5

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      .+..| ...|.+++|+       +++.+|++++.++  .+++||..++.........+|...   +.+ .|+|     ++
T Consensus        47 ~~~~h-~~~v~~~~~~-------~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~---v~~~~~~~-----~~  108 (372)
T 1k8k_C           47 ELKEH-NGQVTGVDWA-------PDSNRIVTCGTDR--NAYVWTLKGRTWKPTLVILRINRA---ARCVRWAP-----NE  108 (372)
T ss_dssp             EEECC-SSCEEEEEEE-------TTTTEEEEEETTS--CEEEEEEETTEEEEEEECCCCSSC---EEEEEECT-----TS
T ss_pred             eecCC-CCcccEEEEe-------CCCCEEEEEcCCC--eEEEEECCCCeeeeeEEeecCCCc---eeEEEECC-----CC
Confidence            34455 8899999999       8999999999988  899999987764433222367666   555 8999     79


Q ss_pred             cEEEEecCCCcEEEEEcccCccccc---ce-eecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         157 ACVVTGSEDSCVYFLDIQSKEHKNA---VN-KLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~~~~~~~---~~-~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      .++++|+.|+.|++||+..   ...   .. ...+|...|.+++|+|++.+|++++.|+.|++||++
T Consensus       109 ~~l~~~~~d~~v~i~d~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (372)
T 1k8k_C          109 KKFAVGSGSRVISICYFEQ---ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY  172 (372)
T ss_dssp             SEEEEEETTSSEEEEEEET---TTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECC
T ss_pred             CEEEEEeCCCEEEEEEecC---CCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcc
Confidence            9999999999999999998   442   23 336788999999999999999999999999999964

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.77  E-value=8e-17  Score=127.00  Aligned_cols=141  Identities=18%  Similarity=0.267  Sum_probs=117.0

Q ss_pred             ccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILK  118 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~  118 (223)
                      .+.+.|..+.++++++.+...                  .+..| ...|.+++|+       +++.+|++++.++  .++
T Consensus       139 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~-~~~i~~~~~~-------~~~~~l~~~~~dg--~i~  208 (337)
T 1gxr_A          139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH-TDGASCIDIS-------NDGTKLWTGGLDN--TVR  208 (337)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEC-------TTSSEEEEEETTS--EEE
T ss_pred             cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecc-cCceEEEEEC-------CCCCEEEEEecCC--cEE
Confidence            566778888888877655332                  23344 7899999999       8999999999999  899


Q ss_pred             EecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEE
Q psy3599         119 VLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSF  197 (223)
Q Consensus       119 i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~  197 (223)
                      +||..++..+..   ..+...   +.+ .|+|     ++.++++++.|+.|++||+++   .+. ..+..|...|.+++|
T Consensus       209 ~~d~~~~~~~~~---~~~~~~---v~~~~~s~-----~~~~l~~~~~~~~i~~~~~~~---~~~-~~~~~~~~~v~~~~~  273 (337)
T 1gxr_A          209 SWDLREGRQLQQ---HDFTSQ---IFSLGYCP-----TGEWLAVGMESSNVEVLHVNK---PDK-YQLHLHESCVLSLKF  273 (337)
T ss_dssp             EEETTTTEEEEE---EECSSC---EEEEEECT-----TSSEEEEEETTSCEEEEETTS---SCE-EEECCCSSCEEEEEE
T ss_pred             EEECCCCceEee---ecCCCc---eEEEEECC-----CCCEEEEEcCCCcEEEEECCC---CCe-EEEcCCccceeEEEE
Confidence            999998876654   355555   555 8999     799999999999999999998   553 467789999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         198 NYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       198 ~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +|++.+|++++.||.|++||+++++
T Consensus       274 ~~~~~~l~~~~~dg~i~~~~~~~~~  298 (337)
T 1gxr_A          274 AYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             CCCCCEEEEecCCCcEEEEECCCCe
Confidence            9999999999999999999998765

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.77  E-value=1.4e-17  Score=140.48  Aligned_cols=120  Identities=13%  Similarity=0.021  Sum_probs=97.5

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCC-cEEEEe
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREG-ACVVTG  162 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~-~~l~sg  162 (223)
                      ...|++++|+       +++ .|++|+.|+  .+++||+.++......+ .+|...+..+...|+|     ++ .+|+||
T Consensus       266 ~~~v~sv~~s-------~~~-~lasgs~Dg--tV~lWD~~~~~~~~~~~-~~H~~~V~sv~~~~s~-----~g~~~laS~  329 (524)
T 2j04_B          266 DSLITTFDFL-------SPT-TVVCGFKNG--FVAEFDLTDPEVPSFYD-QVHDSYILSVSTAYSD-----FEDTVVSTV  329 (524)
T ss_dssp             TTCEEEEEES-------SSS-EEEEEETTS--EEEEEETTBCSSCSEEE-ECSSSCEEEEEEECCT-----TSCCEEEEE
T ss_pred             CCCEEEEEec-------CCC-eEEEEeCCC--EEEEEECCCCCCceEEe-ecccccEEEEEEEcCC-----CCCeEEEEe
Confidence            5789999998       554 799999999  99999998764333334 3898885323224666     66 899999


Q ss_pred             cCCCcEEEEEcccCcccccceeeccccc--CEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         163 SEDSCVYFLDIQSKEHKNAVNKLQGHAC--PVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       163 s~dg~v~iwd~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +.|++|++||+++   ++++..+.+|..  .|.+++|+|++..+++++.|++|++||++++.
T Consensus       330 S~D~tvklWD~~~---~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~  388 (524)
T 2j04_B          330 AVDGYFYIFNPKD---IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF  388 (524)
T ss_dssp             ETTSEEEEECGGG---HHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT
T ss_pred             ccCCeEEEEECCC---CCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc
Confidence            9999999999999   888888877754  47899999999999999999999999998764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.77  E-value=4.9e-17  Score=131.27  Aligned_cols=145  Identities=19%  Similarity=0.209  Sum_probs=113.1

Q ss_pred             ccCCcEEEEEECC-CCceeeee-----------------eeeecC--CCCeeEEEEeecccccCCCCeEEEEEeCCCeEE
Q psy3599          57 RSTGVIVSILCDD-LGRLSKGK-----------------RLVLSQ--DCPITCLSWRSWISREARDPTLLVNIAANAVCI  116 (223)
Q Consensus        57 ~~~~~i~~~~~~~-~~~~~~~~-----------------~~~~~~--~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (223)
                      +|.+.|.++.|+| ++.++.+.                 .+..+.  ...|.+++|+       +++.+|++++.++  .
T Consensus       116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-------~~~~~l~~~~~d~--~  186 (383)
T 3ei3_B          116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVS-------VSRQMLATGDSTG--R  186 (383)
T ss_dssp             STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEE-------TTTTEEEEEETTS--E
T ss_pred             CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEEC-------CCCCEEEEECCCC--C
Confidence            5778888888888 55555433                 112221  3679999999       9999999999999  9


Q ss_pred             EEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCc-EEEEecCCCcEEEEEcccCcc-cccceeecccccCEE
Q psy3599         117 LKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGA-CVVTGSEDSCVYFLDIQSKEH-KNAVNKLQGHACPVL  193 (223)
Q Consensus       117 v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~-~l~sgs~dg~v~iwd~~~~~~-~~~~~~~~~h~~~v~  193 (223)
                      +++||+. +..+.. + .+|...   +.+ +|+|     ++. ++++|+.|+.|++||+++... ..++..+ +|...|.
T Consensus       187 i~i~d~~-~~~~~~-~-~~h~~~---v~~~~~~~-----~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~  254 (383)
T 3ei3_B          187 LLLLGLD-GHEIFK-E-KLHKAK---VTHAEFNP-----RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVN  254 (383)
T ss_dssp             EEEEETT-SCEEEE-E-ECSSSC---EEEEEECS-----SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEE
T ss_pred             EEEEECC-CCEEEE-e-ccCCCc---EEEEEECC-----CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceE
Confidence            9999995 444443 3 478877   555 8999     576 999999999999999987211 2344444 6999999


Q ss_pred             EEEEec-CCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         194 GVSFNY-DESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       194 ~v~~~~-~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +++|+| ++.+|++++.|+.|++||+++++
T Consensus       255 ~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~  284 (383)
T 3ei3_B          255 AAYFNPTDSTKLLTTDQRNEIRVYSSYDWS  284 (383)
T ss_dssp             EEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred             EEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence            999999 99999999999999999998764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.77  E-value=2e-17  Score=134.80  Aligned_cols=107  Identities=19%  Similarity=0.260  Sum_probs=96.3

Q ss_pred             CCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCccc
Q psy3599         101 RDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHK  179 (223)
Q Consensus       101 ~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~  179 (223)
                      +++.+|++++.++  .+++||..++.... .+ .+|...   +.+ +|+|     ++.+|++|+.|+.|++||+.+   +
T Consensus       107 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~-~~-~~h~~~---v~~~~~~~-----~~~~l~s~s~d~~i~iwd~~~---~  171 (420)
T 3vl1_A          107 LQMRRFILGTTEG--DIKVLDSNFNLQRE-ID-QAHVSE---ITKLKFFP-----SGEALISSSQDMQLKIWSVKD---G  171 (420)
T ss_dssp             SSSCEEEEEETTS--CEEEECTTSCEEEE-ET-TSSSSC---EEEEEECT-----TSSEEEEEETTSEEEEEETTT---C
T ss_pred             cCCCEEEEEECCC--CEEEEeCCCcceee-ec-ccccCc---cEEEEECC-----CCCEEEEEeCCCeEEEEeCCC---C
Confidence            8999999999998  89999999886554 33 388887   666 8999     799999999999999999999   8


Q ss_pred             ccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         180 NAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       180 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +.+..+.+|...|.+++|+|++.+|++++.|+.|++||+++++
T Consensus       172 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~  214 (420)
T 3vl1_A          172 SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT  214 (420)
T ss_dssp             CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence            8899999999999999999999999999999999999998764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.77  E-value=3.8e-17  Score=135.10  Aligned_cols=144  Identities=14%  Similarity=0.093  Sum_probs=115.0

Q ss_pred             ccCCcEEEEEECCCCcee-eee--------------------eeee-cCCCCeeEEEEeecccccCCCCeEEEEEeCCCe
Q psy3599          57 RSTGVIVSILCDDLGRLS-KGK--------------------RLVL-SQDCPITCLSWRSWISREARDPTLLVNIAANAV  114 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~-~~~--------------------~~~~-~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~  114 (223)
                      ++.+.|.++.|+|+++.+ .+.                    .+.. .+...|++++|+       +++.+|++++.++ 
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s-------p~~~~l~~~~~~g-  171 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA-------EDDTTVIIADKFG-  171 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC-------TTSSEEEEEETTS-
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc-------CCCCEEEEEeCCC-
Confidence            456678888888887764 322                    1110 125789999999       9999999999888 


Q ss_pred             EEEEEecCCCceEEe---eeeeccccCcceeEEE-eeecCcccCC---CcEEEEecCCCcEEEEEcccCccccccee-ec
Q psy3599         115 CILKVLDKEGAVQLK---RKFNVNHKSSKYQVRS-TFCPIMSFRE---GACVVTGSEDSCVYFLDIQSKEHKNAVNK-LQ  186 (223)
Q Consensus       115 ~~v~i~d~~~~~~~~---~~~~~~h~~~~~~i~~-~~s~~~~~~~---~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~  186 (223)
                       .+.+|++.++....   ..+ .+|...   +.+ .|+|     +   +.+|++|+.|+.|++||+++   ++++.. +.
T Consensus       172 -~v~~~~~~~~~~~~~~~~~~-~~h~~~---v~~~~~sp-----~~~~~~~l~s~~~d~~i~vwd~~~---~~~~~~~~~  238 (450)
T 2vdu_B          172 -DVYSIDINSIPEEKFTQEPI-LGHVSM---LTDVHLIK-----DSDGHQFIITSDRDEHIKISHYPQ---CFIVDKWLF  238 (450)
T ss_dssp             -EEEEEETTSCCCSSCCCCCS-EECSSC---EEEEEEEE-----CTTSCEEEEEEETTSCEEEEEESC---TTCEEEECC
T ss_pred             -cEEEEecCCcccccccceee-ecccCc---eEEEEEcC-----CCCCCcEEEEEcCCCcEEEEECCC---Cceeeeeec
Confidence             78888877654332   123 378777   666 8999     7   88999999999999999998   777776 56


Q ss_pred             ccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         187 GHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       187 ~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +|...|.+++|+ ++.+|++++.|+.|++||+++++
T Consensus       239 ~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~  273 (450)
T 2vdu_B          239 GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGK  273 (450)
T ss_dssp             CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCC
T ss_pred             CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCc
Confidence            899999999999 99999999999999999998875

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.76  E-value=6.2e-17  Score=130.01  Aligned_cols=76  Identities=16%  Similarity=0.235  Sum_probs=68.7

Q ss_pred             cccCcceeEEE-eeecCcccCCCcEEEEecCCCc-EEEEEcccCcccccceeec-c-cccCEEEEEEecCCCEEEEEeCC
Q psy3599         135 NHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSC-VYFLDIQSKEHKNAVNKLQ-G-HACPVLGVSFNYDESLLATSDYQ  210 (223)
Q Consensus       135 ~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~-v~iwd~~~~~~~~~~~~~~-~-h~~~v~~v~~~~~~~~l~s~s~d  210 (223)
                      +|...   +.+ +|+|     ++.+|++|+.|+. |++||+++   ++++..+. + |...|.+++|+|++.+|++++.|
T Consensus       193 ~h~~~---v~~~~~s~-----~g~~l~s~s~d~~~v~iwd~~~---~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d  261 (355)
T 3vu4_A          193 AHTNP---IKMVRLNR-----KSDMVATCSQDGTIIRVFKTED---GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDK  261 (355)
T ss_dssp             CCSSC---EEEEEECT-----TSSEEEEEETTCSEEEEEETTT---CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETT
T ss_pred             ccCCc---eEEEEECC-----CCCEEEEEeCCCCEEEEEECCC---CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECC
Confidence            56555   555 8999     7999999999998 99999999   88999998 5 99999999999999999999999


Q ss_pred             CcEEEeeCCCC
Q psy3599         211 GLIILWSREKH  221 (223)
Q Consensus       211 ~~i~iwd~~~~  221 (223)
                      ++|++||++.+
T Consensus       262 ~~v~iw~~~~~  272 (355)
T 3vu4_A          262 WTLHVFEIFND  272 (355)
T ss_dssp             CEEEEEESSCC
T ss_pred             CEEEEEEccCC
Confidence            99999999764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.76  E-value=1.8e-17  Score=132.82  Aligned_cols=123  Identities=13%  Similarity=0.111  Sum_probs=104.0

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCC--CceEEeeeeeccccCcceeEEE-eeecCcccC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKE--GAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFR  154 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~--~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~  154 (223)
                      .+..| ..+|++++|+       +++.+|++++.++  .+++|+..  ++..+. .+ .+|...   +.+ .|+|..   
T Consensus         6 ~~~~h-~~~v~~~~~s-------~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~-~~-~~h~~~---v~~~~~~~~~---   67 (379)
T 3jrp_A            6 IANAH-NELIHDAVLD-------YYGKRLATCSSDK--TIKIFEVEGETHKLID-TL-TGHEGP---VWRVDWAHPK---   67 (379)
T ss_dssp             CEEEC-CCCEEEEEEC-------SSSSEEEEEETTS--CEEEEEEETTEEEEEE-EE-CCCSSC---EEEEEECCGG---
T ss_pred             EecCC-cccEEEEEEc-------CCCCEEEEEECCC--cEEEEecCCCcceeee-Ee-cCCCCc---EEEEEeCCCC---
Confidence            45677 9999999999       9999999999888  89999987  333333 33 488877   555 888710   


Q ss_pred             CCcEEEEecCCCcEEEEEcccCcccc--cceeecccccCEEEEEEecC--CCEEEEEeCCCcEEEeeCCCC
Q psy3599         155 EGACVVTGSEDSCVYFLDIQSKEHKN--AVNKLQGHACPVLGVSFNYD--ESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       155 ~~~~l~sgs~dg~v~iwd~~~~~~~~--~~~~~~~h~~~v~~v~~~~~--~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      ++.+|++|+.||.|++||+.+   ++  .+..+..|...|.+++|+|+  +.+|++++.|+.|++||++.+
T Consensus        68 ~~~~l~s~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  135 (379)
T 3jrp_A           68 FGTILASCSYDGKVLIWKEEN---GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN  135 (379)
T ss_dssp             GCSEEEEEETTSCEEEEEEET---TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTT
T ss_pred             CCCEEEEeccCCEEEEEEcCC---CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCC
Confidence            289999999999999999998   65  67788889999999999999  999999999999999999875

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.76  E-value=3.8e-17  Score=130.42  Aligned_cols=144  Identities=13%  Similarity=0.154  Sum_probs=108.1

Q ss_pred             ccCCcEEEEEECC--CCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEE
Q psy3599          57 RSTGVIVSILCDD--LGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCI  116 (223)
Q Consensus        57 ~~~~~i~~~~~~~--~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (223)
                      +|.+.|.++.++|  +++++.+.                  ....++...|.+++|+       |++.+|++|+.|+  .
T Consensus       123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~-------pdg~~lasg~~dg--~  193 (343)
T 3lrv_A          123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLH-------KDSLLLALYSPDG--I  193 (343)
T ss_dssp             CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEEC-------TTSCEEEEECTTS--C
T ss_pred             CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEEC-------CCCCEEEEEcCCC--E
Confidence            4557788888888  77766433                  1123435679999999       9999999999999  8


Q ss_pred             EEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecc---cccCE
Q psy3599         117 LKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQG---HACPV  192 (223)
Q Consensus       117 v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~---h~~~v  192 (223)
                      +++||..++..+...+..+|...   +.+ .|+|     ++.+|++++ |+.|++||+++   .+.+..+..   |...+
T Consensus       194 i~iwd~~~~~~~~~~~~~~h~~~---v~~l~fs~-----~g~~l~s~~-~~~v~iwd~~~---~~~~~~~~~~~~~~~~~  261 (343)
T 3lrv_A          194 LDVYNLSSPDQASSRFPVDEEAK---IKEVKFAD-----NGYWMVVEC-DQTVVCFDLRK---DVGTLAYPTYTIPEFKT  261 (343)
T ss_dssp             EEEEESSCTTSCCEECCCCTTSC---EEEEEECT-----TSSEEEEEE-SSBEEEEETTS---STTCBSSCCCBC-----
T ss_pred             EEEEECCCCCCCccEEeccCCCC---EEEEEEeC-----CCCEEEEEe-CCeEEEEEcCC---CCcceeecccccccccc
Confidence            99999998876633443238877   666 8999     799999999 45999999998   666555443   44444


Q ss_pred             E--EEEEecCCCEEEEEeC-CCcEEEeeCCCC
Q psy3599         193 L--GVSFNYDESLLATSDY-QGLIILWSREKH  221 (223)
Q Consensus       193 ~--~v~~~~~~~~l~s~s~-d~~i~iwd~~~~  221 (223)
                      .  +++|+|++.+|++++. |+.+++|++.+.
T Consensus       262 ~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          262 GTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence            4  6999999999999998 999999998553

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.75  E-value=1.3e-16  Score=128.91  Aligned_cols=148  Identities=21%  Similarity=0.303  Sum_probs=119.4

Q ss_pred             cccccCCcEEEEEECC-CCceeeee------------------eee-------------ecCCCCeeEEEEeecccccCC
Q psy3599          54 DQLRSTGVIVSILCDD-LGRLSKGK------------------RLV-------------LSQDCPITCLSWRSWISREAR  101 (223)
Q Consensus        54 ~~~~~~~~i~~~~~~~-~~~~~~~~------------------~~~-------------~~~~~~i~~l~~~~~~~~~~~  101 (223)
                      .+.+|.+.|.++.|+| +++++.+.                  ...             .| ...|.+++|+       +
T Consensus        38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~-------~  109 (408)
T 4a11_B           38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH-RYSVETVQWY-------P  109 (408)
T ss_dssp             ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC-SSCEEEEEEC-------T
T ss_pred             eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccC-CCcEEEEEEc-------c
Confidence            3346899999999999 88877554                  111             24 8899999999       6


Q ss_pred             -CCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCccc
Q psy3599         102 -DPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHK  179 (223)
Q Consensus       102 -~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~  179 (223)
                       ++.+|++++.++  .+++||..++..+..   ..+...   +.+ .++|.  ..++.++++|+.|+.|++||+++   +
T Consensus       110 ~~~~~l~s~~~d~--~i~iwd~~~~~~~~~---~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~v~~~d~~~---~  176 (408)
T 4a11_B          110 HDTGMFTSSSFDK--TLKVWDTNTLQTADV---FNFEET---VYSHHMSPV--STKHCLVAVGTRGPKVQLCDLKS---G  176 (408)
T ss_dssp             TCTTCEEEEETTS--EEEEEETTTTEEEEE---EECSSC---EEEEEECSS--CSSCCEEEEEESSSSEEEEESSS---S
T ss_pred             CCCcEEEEEeCCC--eEEEeeCCCCcccee---ccCCCc---eeeeEeecC--CCCCcEEEEEcCCCeEEEEeCCC---c
Confidence             788999999999  899999998876654   245555   333 66663  11456999999999999999999   8


Q ss_pred             ccceeecccccCEEEEEEecCCC-EEEEEeCCCcEEEeeCCCCC
Q psy3599         180 NAVNKLQGHACPVLGVSFNYDES-LLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       180 ~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +++..+.+|...|.+++|+|++. +|++++.||.|++||+++++
T Consensus       177 ~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~  220 (408)
T 4a11_B          177 SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS  220 (408)
T ss_dssp             CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSS
T ss_pred             ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCC
Confidence            88999999999999999999988 69999999999999997653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.75  E-value=6.8e-17  Score=126.26  Aligned_cols=115  Identities=17%  Similarity=0.250  Sum_probs=99.5

Q ss_pred             CCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEE
Q psy3599          83 QDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVT  161 (223)
Q Consensus        83 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~s  161 (223)
                      +...|.+++|+       +++. +++++.++  .+++||..++..+...  .+|...   +.+ .|+|     ++ .+++
T Consensus       183 ~~~~i~~~~~~-------~~~~-~~~~~~dg--~i~i~d~~~~~~~~~~--~~~~~~---i~~~~~~~-----~~-~l~~  241 (313)
T 3odt_A          183 HNDVVRHLAVV-------DDGH-FISCSNDG--LIKLVDMHTGDVLRTY--EGHESF---VYCIKLLP-----NG-DIVS  241 (313)
T ss_dssp             CSSCEEEEEEE-------ETTE-EEEEETTS--EEEEEETTTCCEEEEE--ECCSSC---EEEEEECT-----TS-CEEE
T ss_pred             CcccEEEEEEc-------CCCe-EEEccCCC--eEEEEECCchhhhhhh--hcCCce---EEEEEEec-----CC-CEEE
Confidence            47899999999       8888 88888888  8999999988766543  478877   555 8999     56 5889


Q ss_pred             ecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         162 GSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       162 gs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ++.||.|++||+.+   ++++..+..|...|.+++|+|++. +++++.||.|++||+++++
T Consensus       242 ~~~dg~v~iwd~~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~  298 (313)
T 3odt_A          242 CGEDRTVRIWSKEN---GSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR  298 (313)
T ss_dssp             EETTSEEEEECTTT---CCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred             EecCCEEEEEECCC---CceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence            99999999999999   889999999999999999999998 6678899999999998754

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.75  E-value=1.4e-17  Score=139.58  Aligned_cols=142  Identities=13%  Similarity=0.114  Sum_probs=109.5

Q ss_pred             cccCCcEEEEEECCCCceeee-----e---eee-ecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCce
Q psy3599          56 LRSTGVIVSILCDDLGRLSKG-----K---RLV-LSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAV  126 (223)
Q Consensus        56 ~~~~~~i~~~~~~~~~~~~~~-----~---~~~-~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~  126 (223)
                      -+|.+.|..++++|+|..-..     .   .+. .+ ...|.+++|+       |+|.+||+++.++  .+++||.++  
T Consensus        49 ~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~-~~~V~~vawS-------PdG~~LAs~s~dg--~V~iwd~~~--  116 (588)
T 2j04_A           49 NCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQP-VCYPRVCKPS-------PIDDWMAVLSNNG--NVSVFKDNK--  116 (588)
T ss_dssp             SSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSC-SCCEEEEEEC-------SSSSCEEEEETTS--CEEEEETTE--
T ss_pred             cCCCccEEEEEECCCCCcceEEEEeCCCceEeecCC-CCcEEEEEEC-------CCCCEEEEEeCCC--cEEEEeCCc--
Confidence            368899999999997732110     0   222 33 6789999999       9999999999999  899999654  


Q ss_pred             EEeeeeeccccCc--ceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCccccc-------ceee----cccccCE
Q psy3599         127 QLKRKFNVNHKSS--KYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNA-------VNKL----QGHACPV  192 (223)
Q Consensus       127 ~~~~~~~~~h~~~--~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~-------~~~~----~~h~~~v  192 (223)
                      .+. .+  .|...  ...+.+ +|+|     ++.+|++|+.||.|++||+..   +..       +..+    .+|...|
T Consensus       117 ~l~-~l--~~~~~~~~~sv~svafSP-----DG~~LAsgs~DGtVkIWd~~~---~~l~~~~~i~l~ti~~~~~gh~~~V  185 (588)
T 2j04_A          117 MLT-NL--DSKGNLSSRTYHCFEWNP-----IESSIVVGNEDGELQFFSIRK---NSENTPEFYFESSIRLSDAGSKDWV  185 (588)
T ss_dssp             EEE-EC--CCSSCSTTTCEEEEEECS-----SSSCEEEEETTSEEEEEECCC---CTTTCCCCEEEEEEECSCTTCCCCE
T ss_pred             eee-ec--cCCCccccccEEEEEEcC-----CCCEEEEEcCCCEEEEEECCC---CccccccceeeeeeecccccccccE
Confidence            333 22  24431  111666 8999     899999999999999999998   542       4565    6788899


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         193 LGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       193 ~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+++|+|+|  +++++.|++|++||+..++
T Consensus       186 ~sVawSPdg--Laass~D~tVrlWd~~~~~  213 (588)
T 2j04_A          186 THIVWYEDV--LVAALSNNSVFSMTVSASS  213 (588)
T ss_dssp             EEEEEETTE--EEEEETTCCEEEECCCSSS
T ss_pred             EEEEEcCCc--EEEEeCCCeEEEEECCCCc
Confidence            999999999  8888899999999987653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.75  E-value=1.6e-16  Score=126.70  Aligned_cols=147  Identities=12%  Similarity=0.110  Sum_probs=118.8

Q ss_pred             ccccccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCe
Q psy3599          53 NDQLRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAV  114 (223)
Q Consensus        53 ~~~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~  114 (223)
                      ..+.+|.+.|.++.|+++++++.+.                  .+..| ...|.+++|+       +++.+|++++.++ 
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~-------~~~~~l~s~~~dg-   96 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGH-TGTIWSIDVD-------CFTKYCVTGSADY-   96 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCC-SSCEEEEEEC-------TTSSEEEEEETTT-
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhc-CCcEEEEEEc-------CCCCEEEEEeCCC-
Confidence            3445899999999999988776543                  33445 7899999999       8999999999999 


Q ss_pred             EEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCC-----CcEEEEEcccCcc--------cc
Q psy3599         115 CILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSED-----SCVYFLDIQSKEH--------KN  180 (223)
Q Consensus       115 ~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~d-----g~v~iwd~~~~~~--------~~  180 (223)
                       .+++||+.++..+...   .+...   +.+ .|+|     ++.++++++.+     +.|++||+.....        ..
T Consensus        97 -~i~iwd~~~~~~~~~~---~~~~~---v~~~~~~~-----~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~  164 (369)
T 3zwl_B           97 -SIKLWDVSNGQCVATW---KSPVP---VKRVEFSP-----CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE  164 (369)
T ss_dssp             -EEEEEETTTCCEEEEE---ECSSC---EEEEEECT-----TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS
T ss_pred             -eEEEEECCCCcEEEEe---ecCCC---eEEEEEcc-----CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccc
Confidence             8999999988766642   35555   555 8999     79999999999     9999999987210        02


Q ss_pred             cceeeccccc--CEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         181 AVNKLQGHAC--PVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       181 ~~~~~~~h~~--~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      .+..+..|..  .+.+++|+|++..|++++.||.|++||+++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  206 (369)
T 3zwl_B          165 PIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN  206 (369)
T ss_dssp             CSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred             eeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence            3445556666  899999999999999999999999999987

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.75  E-value=1.2e-16  Score=130.17  Aligned_cols=141  Identities=19%  Similarity=0.255  Sum_probs=114.8

Q ss_pred             cCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEE
Q psy3599          58 STGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKV  119 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i  119 (223)
                      +.+.|.++.|+++++++...                  .+..| ...|.+++|+         +.+|++++.++  .+++
T Consensus       133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~---------~~~l~~~~~dg--~i~i  200 (401)
T 4aez_A          133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGH-QARVGCLSWN---------RHVLSSGSRSG--AIHH  200 (401)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEEE---------TTEEEEEETTS--EEEE
T ss_pred             CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCC-CCceEEEEEC---------CCEEEEEcCCC--CEEE
Confidence            57789999999988766443                  23345 7789999987         46899999999  8999


Q ss_pred             ecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEe
Q psy3599         120 LDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFN  198 (223)
Q Consensus       120 ~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~  198 (223)
                      ||..........+ .+|...   +.+ .|+|     ++.++++|+.|+.|++||+++   ++++..+..|...|.+++|+
T Consensus       201 ~d~~~~~~~~~~~-~~~~~~---v~~~~~~~-----~~~~l~s~~~d~~v~iwd~~~---~~~~~~~~~~~~~v~~~~~~  268 (401)
T 4aez_A          201 HDVRIANHQIGTL-QGHSSE---VCGLAWRS-----DGLQLASGGNDNVVQIWDARS---SIPKFTKTNHNAAVKAVAWC  268 (401)
T ss_dssp             EETTSSSCEEEEE-ECCSSC---EEEEEECT-----TSSEEEEEETTSCEEEEETTC---SSEEEEECCCSSCCCEEEEC
T ss_pred             EecccCcceeeEE-cCCCCC---eeEEEEcC-----CCCEEEEEeCCCeEEEccCCC---CCccEEecCCcceEEEEEEC
Confidence            9998443333344 388887   555 8999     799999999999999999999   88888999999999999999


Q ss_pred             cCC-CEEEEEe--CCCcEEEeeCCCCC
Q psy3599         199 YDE-SLLATSD--YQGLIILWSREKHE  222 (223)
Q Consensus       199 ~~~-~~l~s~s--~d~~i~iwd~~~~~  222 (223)
                      |++ .++++++  .|+.|++||+++++
T Consensus       269 p~~~~ll~~~~gs~d~~i~i~d~~~~~  295 (401)
T 4aez_A          269 PWQSNLLATGGGTMDKQIHFWNAATGA  295 (401)
T ss_dssp             TTSTTEEEEECCTTTCEEEEEETTTCC
T ss_pred             CCCCCEEEEecCCCCCEEEEEECCCCC
Confidence            975 5667765  79999999998765

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.75  E-value=5e-17  Score=129.30  Aligned_cols=122  Identities=15%  Similarity=0.165  Sum_probs=97.9

Q ss_pred             CCCeeEEEEeecccccCC---CCeEEEEEeCCCeEEEEEecCCCceEEeeee---eccccCcceeEEE-eeecCcccCCC
Q psy3599          84 DCPITCLSWRSWISREAR---DPTLLVNIAANAVCILKVLDKEGAVQLKRKF---NVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~---~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~---~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      ...|.+++|+       |   ++.+|++++.++  .+++||..++..+....   ..+|...   +.+ .|+|     ++
T Consensus       209 ~~~v~~~~~~-------~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~-----~~  271 (357)
T 3i2n_A          209 KNGVCSLEFD-------RKDISMNKLVATSLEG--KFHVFDMRTQHPTKGFASVSEKAHKST---VWQVRHLP-----QN  271 (357)
T ss_dssp             SSCEEEEEES-------CSSSSCCEEEEEESTT--EEEEEEEEEEETTTEEEEEEEECCSSC---EEEEEEET-----TE
T ss_pred             CCceEEEEcC-------CCCCCCCEEEEECCCC--eEEEEeCcCCCcccceeeeccCCCcCC---EEEEEECC-----CC
Confidence            7899999999       7   899999999999  89999987654332210   0267777   555 8999     67


Q ss_pred             c-EEEEecCCCcEEEEEcccCcc----------------cccceeecccccCEEEEEEecCCCEEE-EEeCCCcEEEeeC
Q psy3599         157 A-CVVTGSEDSCVYFLDIQSKEH----------------KNAVNKLQGHACPVLGVSFNYDESLLA-TSDYQGLIILWSR  218 (223)
Q Consensus       157 ~-~l~sgs~dg~v~iwd~~~~~~----------------~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~s~d~~i~iwd~  218 (223)
                      . ++++|+.||.|++||++....                .+++..+.+|...|.+++|+|++..|+ +++.|+.|++||+
T Consensus       272 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~  351 (357)
T 3i2n_A          272 RELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIV  351 (357)
T ss_dssp             EEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred             CcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence            6 899999999999999985110                135677889999999999999999888 8999999999999


Q ss_pred             CCCC
Q psy3599         219 EKHE  222 (223)
Q Consensus       219 ~~~~  222 (223)
                      .+.+
T Consensus       352 ~~~~  355 (357)
T 3i2n_A          352 TKLN  355 (357)
T ss_dssp             CC--
T ss_pred             CCcc
Confidence            8754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.74  E-value=3.1e-17  Score=146.48  Aligned_cols=142  Identities=14%  Similarity=0.079  Sum_probs=115.6

Q ss_pred             cccCCcEEEEEECCCCceeeee----------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEE
Q psy3599          56 LRSTGVIVSILCDDLGRLSKGK----------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKV  119 (223)
Q Consensus        56 ~~~~~~i~~~~~~~~~~~~~~~----------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i  119 (223)
                      .+|.+.|.+++|+|+++++++.                .....+..+|.+++|+       + +.+|++++.|+  .+++
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fs-------p-g~~L~S~s~D~--~v~l   83 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFV-------K-GIYLVVINAKD--TVYV   83 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEE-------T-TTEEEEEETTC--EEEE
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEc-------C-CCEEEEEECcC--eEEE
Confidence            4788899999999988877654                1122236789999999       7 77999999999  9999


Q ss_pred             ecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccc-----------eeecc
Q psy3599         120 LDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAV-----------NKLQG  187 (223)
Q Consensus       120 ~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-----------~~~~~  187 (223)
                      ||+.++..+...   .|...   +.+ .|+|     ++.++++|+.||.|++||+++   +++.           ..+.+
T Consensus        84 Wd~~~~~~~~~~---~~~~~---V~~v~~sp-----~g~~l~sgs~dg~V~lwd~~~---~~~~~~~i~~~~~~~~~~~~  149 (902)
T 2oaj_A           84 LSLYSQKVLTTV---FVPGK---ITSIDTDA-----SLDWMLIGLQNGSMIVYDIDR---DQLSSFKLDNLQKSSFFPAA  149 (902)
T ss_dssp             EETTTCSEEEEE---ECSSC---EEEEECCT-----TCSEEEEEETTSCEEEEETTT---TEEEEEEECCHHHHHTCSSS
T ss_pred             EECCCCcEEEEE---cCCCC---EEEEEECC-----CCCEEEEEcCCCcEEEEECCC---Cccccceecccccccccccc
Confidence            999988766543   35555   666 8999     799999999999999999988   5542           34577


Q ss_pred             cccCEEEEEEecC-CCEEEEEeCCCcEEEeeCCCCC
Q psy3599         188 HACPVLGVSFNYD-ESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       188 h~~~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      |...|.+++|+|+ +..+++|+.|+.| +||+++++
T Consensus       150 h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~  184 (902)
T 2oaj_A          150 RLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE  184 (902)
T ss_dssp             CCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE
T ss_pred             CCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc
Confidence            9999999999996 5789999999999 99998754

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.74  E-value=1.2e-16  Score=130.04  Aligned_cols=143  Identities=13%  Similarity=0.192  Sum_probs=112.7

Q ss_pred             cccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCC-eEEEEEe--CCCe
Q psy3599          56 LRSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDP-TLLVNIA--ANAV  114 (223)
Q Consensus        56 ~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~-~~l~~~~--~~~~  114 (223)
                      .+|.+.|.++.|+++++.+.+.                  .+..| ...|.+++|+       +++ .++++++  .++ 
T Consensus       214 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~-------p~~~~ll~~~~gs~d~-  284 (401)
T 4aez_A          214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNH-NAAVKAVAWC-------PWQSNLLATGGGTMDK-  284 (401)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCC-SSCCCEEEEC-------TTSTTEEEEECCTTTC-
T ss_pred             cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCC-cceEEEEEEC-------CCCCCEEEEecCCCCC-
Confidence            3688889999999987766443                  22334 7899999999       654 6677765  688 


Q ss_pred             EEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEE--ecCCCcEEEEEcccCcccccc--eeecccc
Q psy3599         115 CILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVT--GSEDSCVYFLDIQSKEHKNAV--NKLQGHA  189 (223)
Q Consensus       115 ~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~s--gs~dg~v~iwd~~~~~~~~~~--~~~~~h~  189 (223)
                       .+++||..++..+...   .+...   +.+ .|+|     ++..+++  |+.||.|++||+.+   ++..  ..+.+|.
T Consensus       285 -~i~i~d~~~~~~~~~~---~~~~~---v~~~~~s~-----~~~~l~~~~g~~dg~i~v~~~~~---~~~~~~~~~~~h~  349 (401)
T 4aez_A          285 -QIHFWNAATGARVNTV---DAGSQ---VTSLIWSP-----HSKEIMSTHGFPDNNLSIWSYSS---SGLTKQVDIPAHD  349 (401)
T ss_dssp             -EEEEEETTTCCEEEEE---ECSSC---EEEEEECS-----SSSEEEEEECTTTCEEEEEEEET---TEEEEEEEEECCS
T ss_pred             -EEEEEECCCCCEEEEE---eCCCc---EEEEEECC-----CCCeEEEEeecCCCcEEEEecCC---ccceeEEEecCCC
Confidence             8999999988766542   44445   555 8999     7888888  66999999999998   5443  4467899


Q ss_pred             cCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         190 CPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       190 ~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ..|.+++|+|++.+|++++.||.|++||+.+++
T Consensus       350 ~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          350 TRVLYSALSPDGRILSTAASDENLKFWRVYDGD  382 (401)
T ss_dssp             SCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            999999999999999999999999999998765

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.74  E-value=5.2e-17  Score=142.56  Aligned_cols=144  Identities=18%  Similarity=0.293  Sum_probs=112.9

Q ss_pred             ccCCcEEEEEECCCCceeeee--------------------eeeecCCCCeeEEEEeecccccCCC--CeEEEEEeCCCe
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK--------------------RLVLSQDCPITCLSWRSWISREARD--PTLLVNIAANAV  114 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~--------------------~~~~~~~~~i~~l~~~~~~~~~~~~--~~~l~~~~~~~~  114 (223)
                      +|.+.|.++.|+++|+.+.+.                    .+..| ..+|++++|+       ++  +.+|++++.|+ 
T Consensus         7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h-~~~V~~l~~s-------~~~~~~~l~s~s~Dg-   77 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWA-------HPKFGTILASCSYDG-   77 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCC-SSCEEEEEEC-------CTTSCSEEEEEETTS-
T ss_pred             cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCC-cCceEEEEec-------CCCCCCEEEEEeCCC-
Confidence            566667777776655544322                    33455 8899999999       66  89999999999 


Q ss_pred             EEEEEecCCCce--EEeeeeeccccCcceeEEE-eeecCcccCC--CcEEEEecCCCcEEEEEcccCcccccceeecccc
Q psy3599         115 CILKVLDKEGAV--QLKRKFNVNHKSSKYQVRS-TFCPIMSFRE--GACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHA  189 (223)
Q Consensus       115 ~~v~i~d~~~~~--~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~--~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~  189 (223)
                       .+++||..++.  .+. .+ .+|...   +.+ .|+|     +  +..+++|+.||.|++||++... ......+.+|.
T Consensus        78 -~I~vwd~~~~~~~~~~-~~-~~h~~~---V~~v~~sp-----~~~~~~l~sgs~dg~I~vwdl~~~~-~~~~~~~~~~~  145 (753)
T 3jro_A           78 -KVLIWKEENGRWSQIA-VH-AVHSAS---VNSVQWAP-----HEYGPLLLVASSDGKVSVVEFKENG-TTSPIIIDAHA  145 (753)
T ss_dssp             -CEEEEEEETTEEEEEE-EE-CCCSSC---EEEEEECC-----GGGCSEEEEEETTSEEEEEECCSSS-CCCCEEEECCS
T ss_pred             -eEEEEECCCCcccccc-cc-cCCCCC---eEEEEECC-----CCCCCEEEEEeCCCcEEEEEeecCC-CcceeEeecCC
Confidence             89999998875  333 22 478777   666 8999     6  8999999999999999998811 23455667899


Q ss_pred             cCEEEEEEec-------------CCCEEEEEeCCCcEEEeeCCCC
Q psy3599         190 CPVLGVSFNY-------------DESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       190 ~~v~~v~~~~-------------~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      ..|.++.|+|             ++..+++|+.||.|++||++++
T Consensus       146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~  190 (753)
T 3jro_A          146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD  190 (753)
T ss_dssp             SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT
T ss_pred             CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC
Confidence            9999999999             5899999999999999999865

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.74  E-value=6.4e-17  Score=132.77  Aligned_cols=146  Identities=13%  Similarity=0.150  Sum_probs=113.1

Q ss_pred             ccCCcEEEEEECCCCceeeee-------eeeec-------------------------CCCCeeEEEEeecccccCCCCe
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK-------RLVLS-------------------------QDCPITCLSWRSWISREARDPT  104 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~-------~~~~~-------------------------~~~~i~~l~~~~~~~~~~~~~~  104 (223)
                      +|.+.|.++.|+++++.+.+.       .+...                         ....+.++.+..     .+++.
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~  183 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFV-----NEEKS  183 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEE-----CSSCE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEE-----cCCCC
Confidence            578889999998877665433       11110                         244555555221     17899


Q ss_pred             EEEEEeCCCeEEEEEecCCCceEEeeeeecc--ccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCccccc
Q psy3599         105 LLVNIAANAVCILKVLDKEGAVQLKRKFNVN--HKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNA  181 (223)
Q Consensus       105 ~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~--h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~  181 (223)
                      +|++++.++  .+++||+.++..+...  .+  |...   +.+ +|+|     ++.+|++|+.||.|++||+++   +++
T Consensus       184 ~l~~~~~d~--~i~iwd~~~~~~~~~~--~~~~h~~~---v~~~~~s~-----~~~~l~s~~~dg~i~iwd~~~---~~~  248 (437)
T 3gre_A          184 LLVALTNLS--RVIIFDIRTLERLQII--ENSPRHGA---VSSICIDE-----ECCVLILGTTRGIIDIWDIRF---NVL  248 (437)
T ss_dssp             EEEEEETTS--EEEEEETTTCCEEEEE--ECCGGGCC---EEEEEECT-----TSCEEEEEETTSCEEEEETTT---TEE
T ss_pred             EEEEEeCCC--eEEEEeCCCCeeeEEE--ccCCCCCc---eEEEEECC-----CCCEEEEEcCCCeEEEEEcCC---ccE
Confidence            999999999  9999999988776644  24  6666   666 8999     799999999999999999999   888


Q ss_pred             ceeec-ccccCEEEEEEec----CCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         182 VNKLQ-GHACPVLGVSFNY----DESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       182 ~~~~~-~h~~~v~~v~~~~----~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +..+. .|...|.+++|+|    ++.+|++|+.||.|++||+++++
T Consensus       249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  294 (437)
T 3gre_A          249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH  294 (437)
T ss_dssp             EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred             EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence            88876 6888999997765    57799999999999999998754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.74  E-value=9.1e-17  Score=128.08  Aligned_cols=128  Identities=20%  Similarity=0.240  Sum_probs=111.4

Q ss_pred             CCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eee
Q psy3599          70 LGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFC  148 (223)
Q Consensus        70 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s  148 (223)
                      .|.......+..| ..+|++++|+       +++.+|++++.++  .+++||..++..+.. + .+|...   +.+ .|+
T Consensus        19 ~G~~~~~~~l~~h-~~~v~~~~~s-------~~~~~l~~~~~dg--~i~vwd~~~~~~~~~-~-~~h~~~---v~~~~~~   83 (369)
T 3zwl_B           19 QGSHMKAIKLTGH-ERPLTQVKYN-------KEGDLLFSCSKDS--SASVWYSLNGERLGT-L-DGHTGT---IWSIDVD   83 (369)
T ss_dssp             SCCSEEEEEEECC-SSCEEEEEEC-------TTSCEEEEEESSS--CEEEEETTTCCEEEE-E-CCCSSC---EEEEEEC
T ss_pred             eccccccEEEEEe-eceEEEEEEc-------CCCCEEEEEeCCC--EEEEEeCCCchhhhh-h-hhcCCc---EEEEEEc
Confidence            4555555567778 9999999999       9999999999888  899999998876654 3 478887   555 899


Q ss_pred             cCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCC-----CcEEEeeCCCC
Q psy3599         149 PIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQ-----GLIILWSREKH  221 (223)
Q Consensus       149 ~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d-----~~i~iwd~~~~  221 (223)
                      |     ++.+|++++.||.|++||+.+   ++++..+. |...|.+++|+|++.++++++.+     +.|++||++.+
T Consensus        84 ~-----~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~  152 (369)
T 3zwl_B           84 C-----FTKYCVTGSADYSIKLWDVSN---GQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD  152 (369)
T ss_dssp             T-----TSSEEEEEETTTEEEEEETTT---CCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred             C-----CCCEEEEEeCCCeEEEEECCC---CcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence            9     799999999999999999999   88888887 88899999999999999999988     99999998765

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.74  E-value=5.7e-17  Score=129.24  Aligned_cols=122  Identities=20%  Similarity=0.284  Sum_probs=100.4

Q ss_pred             eeeecCCCCeeEEEEeecccccCC-CCeEEEEEeCCCeEEEEEecCCCceEEeeeee-ccccCcceeEEE-eeecCcccC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREAR-DPTLLVNIAANAVCILKVLDKEGAVQLKRKFN-VNHKSSKYQVRS-TFCPIMSFR  154 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~-~~h~~~~~~i~~-~~s~~~~~~  154 (223)
                      .+..| ..+|.+++|+       + ++.+|++++.++  .+++||..++..+..... .+|...   +.+ .|+|     
T Consensus       110 ~~~~~-~~~i~~~~~~-------~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~---v~~~~~~~-----  171 (366)
T 3k26_A          110 HYVGH-GNAINELKFH-------PRDPNLLLSVSKDH--ALRLWNIQTDTLVAIFGGVEGHRDE---VLSADYDL-----  171 (366)
T ss_dssp             EEESC-CSCEEEEEEC-------SSCTTEEEEEETTS--CEEEEETTTTEEEEEECSTTSCSSC---EEEEEECT-----
T ss_pred             eecCC-CCcEEEEEEC-------CCCCCEEEEEeCCC--eEEEEEeecCeEEEEecccccccCc---eeEEEECC-----
Confidence            34445 8899999999       7 899999999999  899999998876654210 267776   555 8999     


Q ss_pred             CCcEEEEecCCCcEEEEEcccCcccccceeecc----------------------------cccCEEEEEEecCCCEEEE
Q psy3599         155 EGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQG----------------------------HACPVLGVSFNYDESLLAT  206 (223)
Q Consensus       155 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~----------------------------h~~~v~~v~~~~~~~~l~s  206 (223)
                      ++.++++|+.||.|++||+++   ++.+..+..                            |...|.+++|+  +.++++
T Consensus       172 ~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~  246 (366)
T 3k26_A          172 LGEKIMSCGMDHSLKLWRINS---KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILS  246 (366)
T ss_dssp             TSSEEEEEETTSCEEEEESCS---HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEE
T ss_pred             CCCEEEEecCCCCEEEEECCC---CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEE
Confidence            799999999999999999998   655544443                            89999999998  779999


Q ss_pred             EeCCCcEEEeeCCCCC
Q psy3599         207 SDYQGLIILWSREKHE  222 (223)
Q Consensus       207 ~s~d~~i~iwd~~~~~  222 (223)
                      ++.|+.|++||+++++
T Consensus       247 ~~~d~~i~~wd~~~~~  262 (366)
T 3k26_A          247 KSCENAIVCWKPGKME  262 (366)
T ss_dssp             ECSSSEEEEEEESSTT
T ss_pred             EecCCEEEEEeCCCcc
Confidence            9999999999988753

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.74  E-value=1.5e-16  Score=131.53  Aligned_cols=145  Identities=19%  Similarity=0.298  Sum_probs=114.9

Q ss_pred             ccCCcEEEEEECCCCceeeee-----------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK-----------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKV  119 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~-----------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i  119 (223)
                      +|.+.|.++.|++++.++...                 .+..| ..+|.+++|++.     +++.+|++++.++  .+++
T Consensus       160 ~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~-----~~~~~l~s~s~d~--~i~v  231 (464)
T 3v7d_B          160 GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGH-NSTVRCLDIVEY-----KNIKYIVTGSRDN--TLHV  231 (464)
T ss_dssp             CCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEEES-----SSCEEEEEEETTS--CEEE
T ss_pred             CCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCC-CCccEEEEEecC-----CCCCEEEEEcCCC--cEEE
Confidence            578888888888866433221                 33445 889999999832     5779999999999  8999


Q ss_pred             ecCCCceEEe----------------------eeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCc
Q psy3599         120 LDKEGAVQLK----------------------RKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKE  177 (223)
Q Consensus       120 ~d~~~~~~~~----------------------~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~  177 (223)
                      ||..++....                      ..+ .+|...   +.+ +++     ++.++++|+.||.|++||+.+  
T Consensus       232 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---v~~-~~~-----~~~~l~~~~~d~~i~vwd~~~--  299 (464)
T 3v7d_B          232 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL-RGHMAS---VRT-VSG-----HGNIVVSGSYDNTLIVWDVAQ--  299 (464)
T ss_dssp             EECCCCCCC------CCSSEEESCGGGCTTEEEEE-CCCSSC---EEE-EEE-----ETTEEEEEETTSCEEEEETTT--
T ss_pred             eeCCCCcccccccccCCcceEeeccCCCeEEEEEc-cCccce---EEE-EcC-----CCCEEEEEeCCCeEEEEECCC--
Confidence            9988664321                      122 356555   332 355     689999999999999999999  


Q ss_pred             ccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         178 HKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       178 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                       ++++..+.+|...|.+++|+|++..+++|+.||.|++||+++++
T Consensus       300 -~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~  343 (464)
T 3v7d_B          300 -MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE  343 (464)
T ss_dssp             -TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             -CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence             89999999999999999999999999999999999999998764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.74  E-value=1.2e-16  Score=129.74  Aligned_cols=144  Identities=16%  Similarity=0.299  Sum_probs=114.3

Q ss_pred             cCCcEEEEEECCCCceeeee-----------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEe
Q psy3599          58 STGVIVSILCDDLGRLSKGK-----------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVL  120 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~-----------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~  120 (223)
                      |.+.|.++.|+|+++++...                 .+..| ..+|.+++|+       +++.+|++++.++  .+++|
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-~~~v~~~~~~-------~~~~~l~~~~~d~--~i~iw  176 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFH-RAPIVSVKWN-------KDGTHIISMDVEN--VTILW  176 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCC-CSCEEEEEEC-------TTSSEEEEEETTC--CEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCC-CccEEEEEEC-------CCCCEEEEEecCC--eEEEE
Confidence            56788889998887766443                 23335 7899999999       9999999999888  89999


Q ss_pred             cCCCceEEeeeeeccccCcce-------------eEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecc
Q psy3599         121 DKEGAVQLKRKFNVNHKSSKY-------------QVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQG  187 (223)
Q Consensus       121 d~~~~~~~~~~~~~~h~~~~~-------------~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~  187 (223)
                      |..++..+... . .+.....             .....|+|      +..+++++.||.|++||+.+   ++.+..+.+
T Consensus       177 d~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~g~i~~~d~~~---~~~~~~~~~  245 (425)
T 1r5m_A          177 NVISGTVMQHF-E-LKETGGSSINAENHSGDGSLGVDVEWVD------DDKFVIPGPKGAIFVYQITE---KTPTGKLIG  245 (425)
T ss_dssp             ETTTTEEEEEE-C-CC---------------CCCBSCCEEEE------TTEEEEECGGGCEEEEETTC---SSCSEEECC
T ss_pred             ECCCCcEEEEe-e-ccccCccceeeccccCCcceeeEEEEcC------CCEEEEEcCCCeEEEEEcCC---Cceeeeecc
Confidence            99988766543 2 3333200             02336777      46688999999999999999   888889999


Q ss_pred             cccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         188 HACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       188 h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      |...|.+++|+|++.+|++++.|+.|++||+++++
T Consensus       246 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  280 (425)
T 1r5m_A          246 HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN  280 (425)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence            99999999999999999999999999999998764

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.74  E-value=1.8e-16  Score=130.11  Aligned_cols=114  Identities=13%  Similarity=0.187  Sum_probs=95.2

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeee-------eeccccCcceeEEE-eeecCcccCC
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRK-------FNVNHKSSKYQVRS-TFCPIMSFRE  155 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~-------~~~~h~~~~~~i~~-~~s~~~~~~~  155 (223)
                      ...|.+++|+       +++.+|+++ .|+  .+++||+.........       + .+|...   +.+ +|+|     +
T Consensus       177 ~~~v~~~~~~-------~~~~~l~s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~---v~~~~~~p-----~  237 (447)
T 3dw8_B          177 TYHINSISIN-------SDYETYLSA-DDL--RINLWHLEITDRSFNIVDIKPANM-EELTEV---ITAAEFHP-----N  237 (447)
T ss_dssp             SSCCCEEEEC-------TTSSEEEEE-CSS--EEEEEETTEEEEEEEEEECCCSSG-GGCCCC---EEEEEECS-----S
T ss_pred             CcceEEEEEc-------CCCCEEEEe-CCC--eEEEEECCCCCceeeeeecccccc-cccCcc---eEEEEECC-----C
Confidence            7899999999       899999998 688  8999999844333221       2 377777   555 8999     6


Q ss_pred             C-cEEEEecCCCcEEEEEcccCccccc----ceeeccccc------------CEEEEEEecCCCEEEEEeCCCcEEEeeC
Q psy3599         156 G-ACVVTGSEDSCVYFLDIQSKEHKNA----VNKLQGHAC------------PVLGVSFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       156 ~-~~l~sgs~dg~v~iwd~~~~~~~~~----~~~~~~h~~------------~v~~v~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      + .+|++|+.||.|++||+++   ++.    +..+.+|..            .|.+++|+|++.+|++++. +.|++||+
T Consensus       238 ~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~  313 (447)
T 3dw8_B          238 SCNTFVYSSSKGTIRLCDMRA---SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDL  313 (447)
T ss_dssp             CTTEEEEEETTSCEEEEETTT---CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEET
T ss_pred             CCcEEEEEeCCCeEEEEECcC---CccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeC
Confidence            6 9999999999999999998   665    678888876            8999999999999999998 99999999


Q ss_pred             CC
Q psy3599         219 EK  220 (223)
Q Consensus       219 ~~  220 (223)
                      ++
T Consensus       314 ~~  315 (447)
T 3dw8_B          314 NM  315 (447)
T ss_dssp             TC
T ss_pred             CC
Confidence            86

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.74  E-value=1.5e-16  Score=128.58  Aligned_cols=116  Identities=19%  Similarity=0.356  Sum_probs=102.1

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeecc---c---cCcceeEEE-eeecCcccCCC
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVN---H---KSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~---h---~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      ...|.+++|+       +++ +|++++.++  .+++||+.++..+.. + ..   |   ...   +.+ .|+|     ++
T Consensus       186 ~~~i~~~~~~-------~~~-~l~~~~~dg--~i~i~d~~~~~~~~~-~-~~~~~h~~~~~~---i~~i~~~~-----~~  245 (397)
T 1sq9_A          186 SQFATSVDIS-------ERG-LIATGFNNG--TVQISELSTLRPLYN-F-ESQHSMINNSNS---IRSVKFSP-----QG  245 (397)
T ss_dssp             CCCCCEEEEC-------TTS-EEEEECTTS--EEEEEETTTTEEEEE-E-ECCC---CCCCC---EEEEEECS-----ST
T ss_pred             CCCceEEEEC-------CCc-eEEEEeCCC--cEEEEECCCCceeEE-E-eccccccccCCc---cceEEECC-----CC
Confidence            6789999999       888 999999999  899999998866654 3 35   6   666   666 8999     79


Q ss_pred             cEEEEecCC---CcEEEEEcccCcccccceeecc-------------cccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         157 ACVVTGSED---SCVYFLDIQSKEHKNAVNKLQG-------------HACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       157 ~~l~sgs~d---g~v~iwd~~~~~~~~~~~~~~~-------------h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      .+|++++.|   |.|++||+++   ++++..+.+             |...|.+++|+|++.+|++++.||.|++||+++
T Consensus       246 ~~l~~~~~d~~~g~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  322 (397)
T 1sq9_A          246 SLLAIAHDSNSFGCITLYETEF---GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  322 (397)
T ss_dssp             TEEEEEEEETTEEEEEEEETTT---CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             CEEEEEecCCCCceEEEEECCC---CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            999999999   9999999999   888899988             999999999999999999999999999999987


Q ss_pred             CC
Q psy3599         221 HE  222 (223)
Q Consensus       221 ~~  222 (223)
                      ++
T Consensus       323 ~~  324 (397)
T 1sq9_A          323 KE  324 (397)
T ss_dssp             TE
T ss_pred             Cc
Confidence            64

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.73  E-value=3.4e-16  Score=133.17  Aligned_cols=142  Identities=17%  Similarity=0.156  Sum_probs=120.4

Q ss_pred             ccCCcEEEEEECCCCceeeee--------------------eeeecCCCCeeEEEEeecccccCCCCe-EEEEEeCCCeE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK--------------------RLVLSQDCPITCLSWRSWISREARDPT-LLVNIAANAVC  115 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~--------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~-~l~~~~~~~~~  115 (223)
                      .+.+.|..+.|+|+++.+...                    .+..| ...|.+++|+       +++. +|++++.++  
T Consensus       114 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~v~~~~~~-------~~~~~~l~~~~~d~--  183 (615)
T 1pgu_A          114 VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGH-SQRINACHLK-------QSRPMRSMTVGDDG--  183 (615)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSC-SSCEEEEEEC-------SSSSCEEEEEETTT--
T ss_pred             cccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecC-CccEEEEEEC-------CCCCcEEEEEeCCC--
Confidence            577889999999988766432                    22344 7789999999       8886 899999999  


Q ss_pred             EEEEecCCCceEEeeeeeccccC---cceeEEE-eeecCcccCC-CcEEEEecCCCcEEEEEcccCcccccceee-c---
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKS---SKYQVRS-TFCPIMSFRE-GACVVTGSEDSCVYFLDIQSKEHKNAVNKL-Q---  186 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~---~~~~i~~-~~s~~~~~~~-~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~---  186 (223)
                      .+++||..++..+.. + .+|..   .   +.+ .|+|     + +.++++|+.||.|++||+++   ++.+..+ .   
T Consensus       184 ~v~vwd~~~~~~~~~-~-~~~~~~~~~---v~~~~~~~-----~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~  250 (615)
T 1pgu_A          184 SVVFYQGPPFKFSAS-D-RTHHKQGSF---VRDVEFSP-----DSGEFVITVGSDRKISCFDGKS---GEFLKYIEDDQE  250 (615)
T ss_dssp             EEEEEETTTBEEEEE-E-CSSSCTTCC---EEEEEECS-----TTCCEEEEEETTCCEEEEETTT---CCEEEECCBTTB
T ss_pred             cEEEEeCCCcceeee-e-cccCCCCce---EEEEEECC-----CCCCEEEEEeCCCeEEEEECCC---CCEeEEeccccc
Confidence            899999998876654 3 37777   5   666 8999     7 99999999999999999999   8888888 6   


Q ss_pred             ccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         187 GHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       187 ~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +|...|.++.|+ ++.+|++++.|+.|++||+++++
T Consensus       251 ~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~  285 (615)
T 1pgu_A          251 PVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSK  285 (615)
T ss_dssp             CCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTE
T ss_pred             ccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCc
Confidence            899999999999 99999999999999999998754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.73  E-value=9.4e-17  Score=141.22  Aligned_cols=121  Identities=11%  Similarity=0.236  Sum_probs=109.2

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      .+..| ...|.+++|+       |++.+|++++.++  .+++||..++..+.. + .+|...   +.+ .|+|     ++
T Consensus         8 ~~~~h-~~~v~~i~~s-------p~~~~la~~~~~g--~v~iwd~~~~~~~~~-~-~~~~~~---v~~~~~s~-----~~   67 (814)
T 3mkq_A            8 TFSNR-SDRVKGIDFH-------PTEPWVLTTLYSG--RVEIWNYETQVEVRS-I-QVTETP---VRAGKFIA-----RK   67 (814)
T ss_dssp             EEEEE-CSCEEEEEEC-------SSSSEEEEEETTS--EEEEEETTTTEEEEE-E-ECCSSC---EEEEEEEG-----GG
T ss_pred             eeecC-CCceEEEEEC-------CCCCEEEEEeCCC--EEEEEECCCCceEEE-E-ecCCCc---EEEEEEeC-----CC
Confidence            56677 8999999999       9999999999999  899999998876664 3 378877   666 8999     79


Q ss_pred             cEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         157 ACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      .+|++|+.||.|++||+.+   ++.+..+.+|...|.+++|+|++..|++++.||.|++||++++
T Consensus        68 ~~l~~~~~dg~i~vw~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~  129 (814)
T 3mkq_A           68 NWIIVGSDDFRIRVFNYNT---GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN  129 (814)
T ss_dssp             TEEEEEETTSEEEEEETTT---CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT
T ss_pred             CEEEEEeCCCeEEEEECCC---CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC
Confidence            9999999999999999999   8889999999999999999999999999999999999998765

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1.1e-16  Score=134.25  Aligned_cols=139  Identities=8%  Similarity=0.095  Sum_probs=109.1

Q ss_pred             ccCCcEEEEEECCCCceeeee-------e---------eeecCCC-----CeeEEEEeecccccCCCCeEEEEEeCCCeE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK-------R---------LVLSQDC-----PITCLSWRSWISREARDPTLLVNIAANAVC  115 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~-------~---------~~~~~~~-----~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~  115 (223)
                      .+...|.+++|+|+|+.+++.       .         +. | ..     .+.+++|+       |||++|+++++|+  
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~-~~~~~~~sv~svafS-------PDG~~LAsgs~DG--  151 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-S-KGNLSSRTYHCFEWN-------PIESSIVVGNEDG--  151 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-C-SSCSTTTCEEEEEEC-------SSSSCEEEEETTS--
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-C-CCccccccEEEEEEc-------CCCCEEEEEcCCC--
Confidence            457889999999999877654       1         22 3 33     59999999       9999999999999  


Q ss_pred             EEEEecCCCceE------Eeeeee---ccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCccccc---c
Q psy3599         116 ILKVLDKEGAVQ------LKRKFN---VNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNA---V  182 (223)
Q Consensus       116 ~v~i~d~~~~~~------~~~~~~---~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~---~  182 (223)
                      .+++||..++..      ....+.   .+|...   +.+ +|+|     ++  +++++.|+.|++||+..   ...   .
T Consensus       152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~---V~sVawSP-----dg--Laass~D~tVrlWd~~~---~~~~~~~  218 (588)
T 2j04_A          152 ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDW---VTHIVWYE-----DV--LVAALSNNSVFSMTVSA---SSHQPVS  218 (588)
T ss_dssp             EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCC---EEEEEEET-----TE--EEEEETTCCEEEECCCS---SSSCCCE
T ss_pred             EEEEEECCCCccccccceeeeeeeccccccccc---EEEEEEcC-----Cc--EEEEeCCCeEEEEECCC---Cccccce
Confidence            999999987742      122331   367777   555 8999     67  88889999999999988   553   3


Q ss_pred             eee-cccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         183 NKL-QGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       183 ~~~-~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .++ .+|...|.+++|+  ++.+|+++ +++|++||+..++
T Consensus       219 ~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~  256 (588)
T 2j04_A          219 RMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYS  256 (588)
T ss_dssp             EEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTE
T ss_pred             eeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCe
Confidence            456 4788899999999  68999997 7999999987653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.73  E-value=2e-16  Score=138.87  Aligned_cols=153  Identities=18%  Similarity=0.248  Sum_probs=114.7

Q ss_pred             cccCCcEEEEEECCC--Cceeeee--------------------eeeecCCCCeeEEEEeecccccCCC--CeEEEEEeC
Q psy3599          56 LRSTGVIVSILCDDL--GRLSKGK--------------------RLVLSQDCPITCLSWRSWISREARD--PTLLVNIAA  111 (223)
Q Consensus        56 ~~~~~~i~~~~~~~~--~~~~~~~--------------------~~~~~~~~~i~~l~~~~~~~~~~~~--~~~l~~~~~  111 (223)
                      .+|.+.|.++.|+++  ++.+.+.                    .+..| ..+|++++|+       |+  +.+|++++.
T Consensus        50 ~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h-~~~V~~v~~s-------p~~~~~~l~sgs~  121 (753)
T 3jro_A           50 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH-SASVNSVQWA-------PHEYGPLLLVASS  121 (753)
T ss_dssp             CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEEC-------CGGGCSEEEEEET
T ss_pred             cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCC-CCCeEEEEEC-------CCCCCCEEEEEeC
Confidence            356777777777664  5544332                    22334 7899999999       77  899999999


Q ss_pred             CCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcc--------cCCCcEEEEecCCCcEEEEEcccCcc-ccc
Q psy3599         112 NAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMS--------FREGACVVTGSEDSCVYFLDIQSKEH-KNA  181 (223)
Q Consensus       112 ~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~--------~~~~~~l~sgs~dg~v~iwd~~~~~~-~~~  181 (223)
                      ++  .+++||..++.........+|...   +.+ .|+|...        ..++..+++|+.||.|++||+++... ..+
T Consensus       122 dg--~I~vwdl~~~~~~~~~~~~~~~~~---v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~  196 (753)
T 3jro_A          122 DG--KVSVVEFKENGTTSPIIIDAHAIG---VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL  196 (753)
T ss_dssp             TS--EEEEEECCSSSCCCCEEEECCSSC---EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEE
T ss_pred             CC--cEEEEEeecCCCcceeEeecCCCc---eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccccee
Confidence            99  999999887632222211477776   555 7888210        00278999999999999999987110 155


Q ss_pred             ceeecccccCEEEEEEecC---CCEEEEEeCCCcEEEeeCCCC
Q psy3599         182 VNKLQGHACPVLGVSFNYD---ESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       182 ~~~~~~h~~~v~~v~~~~~---~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      +..+.+|...|.+++|+|+   +.+|++++.||.|++||++++
T Consensus       197 ~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          197 ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             EEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             eeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence            6778899999999999999   899999999999999999875

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.8e-16  Score=128.88  Aligned_cols=145  Identities=15%  Similarity=0.304  Sum_probs=115.7

Q ss_pred             cccCCcEEEEEECCC-Cceeeee--------------e-------------eeecCCCCeeEEEEeecccccCCC-CeEE
Q psy3599          56 LRSTGVIVSILCDDL-GRLSKGK--------------R-------------LVLSQDCPITCLSWRSWISREARD-PTLL  106 (223)
Q Consensus        56 ~~~~~~i~~~~~~~~-~~~~~~~--------------~-------------~~~~~~~~i~~l~~~~~~~~~~~~-~~~l  106 (223)
                      .+|.+.|.++.|+|+ ++++.+.              .             ...| ...|.+++|+       ++ +.+|
T Consensus       110 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~-------~~~~~~l  181 (416)
T 2pm9_A          110 SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS-VDEVISLAWN-------QSLAHVF  181 (416)
T ss_dssp             CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS-SCCCCEEEEC-------SSCTTEE
T ss_pred             cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC-CCCeeEEEeC-------CCCCcEE
Confidence            367788888888886 5555332              1             0123 6789999999       77 7899


Q ss_pred             EEEeCCCeEEEEEecCCCceEEeeeeeccc------cCcceeEEE-eeecCcccCCCcEEEEecCCC---cEEEEEcccC
Q psy3599         107 VNIAANAVCILKVLDKEGAVQLKRKFNVNH------KSSKYQVRS-TFCPIMSFREGACVVTGSEDS---CVYFLDIQSK  176 (223)
Q Consensus       107 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h------~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg---~v~iwd~~~~  176 (223)
                      ++++.++  .+++||+.++..+...  ..+      ...   +.+ .|+|.    +..++++++.|+   .|++||+++ 
T Consensus       182 ~~~~~dg--~v~iwd~~~~~~~~~~--~~~~~~~~~~~~---v~~~~~~~~----~~~~l~~~~~d~~~~~i~~~d~~~-  249 (416)
T 2pm9_A          182 ASAGSSN--FASIWDLKAKKEVIHL--SYTSPNSGIKQQ---LSVVEWHPK----NSTRVATATGSDNDPSILIWDLRN-  249 (416)
T ss_dssp             EEESSSS--CEEEEETTTTEEEEEE--CCCCCSSCCCCC---EEEEEECSS----CTTEEEEEECCSSSCCCCEEETTS-
T ss_pred             EEEcCCC--CEEEEECCCCCcceEE--eccccccccCCc---eEEEEECCC----CCCEEEEEECCCCCceEEEEeCCC-
Confidence            9999888  8999999988766543  233      344   666 89993    247999999999   999999998 


Q ss_pred             ccc-ccceeec-ccccCEEEEEEec-CCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         177 EHK-NAVNKLQ-GHACPVLGVSFNY-DESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       177 ~~~-~~~~~~~-~h~~~v~~v~~~~-~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                        + .++..+. +|...|.+++|+| ++.+|++++.|+.|++||+++++
T Consensus       250 --~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~  296 (416)
T 2pm9_A          250 --ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE  296 (416)
T ss_dssp             --TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC
T ss_pred             --CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc
Confidence              5 5677888 8999999999999 89999999999999999998765

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.72  E-value=6.9e-17  Score=131.29  Aligned_cols=148  Identities=11%  Similarity=0.223  Sum_probs=113.9

Q ss_pred             ccCCcEEEEEECCC-Cceeeee------------------eeeecC-----CCCeeEEEEeecccccCCCC-eEEEEEeC
Q psy3599          57 RSTGVIVSILCDDL-GRLSKGK------------------RLVLSQ-----DCPITCLSWRSWISREARDP-TLLVNIAA  111 (223)
Q Consensus        57 ~~~~~i~~~~~~~~-~~~~~~~------------------~~~~~~-----~~~i~~l~~~~~~~~~~~~~-~~l~~~~~  111 (223)
                      .|.+.|.++.|+++ +.++.+.                  .+..+.     ...|.+++|+       +++ .+|++++.
T Consensus       163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~~~~~l~~~~~  235 (416)
T 2pm9_A          163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH-------PKNSTRVATATG  235 (416)
T ss_dssp             CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC-------SSCTTEEEEEEC
T ss_pred             CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC-------CCCCCEEEEEEC
Confidence            56777888888886 4554332                  122221     5789999999       776 68888886


Q ss_pred             CC-eEEEEEecCCCceEEeeeeec-cccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeeccc
Q psy3599         112 NA-VCILKVLDKEGAVQLKRKFNV-NHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGH  188 (223)
Q Consensus       112 ~~-~~~v~i~d~~~~~~~~~~~~~-~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h  188 (223)
                      ++ ...+++||..++......+ . +|...   +.+ .|+|.    ++.+|++++.||.|++||+++   ++++..+.+|
T Consensus       236 d~~~~~i~~~d~~~~~~~~~~~-~~~~~~~---v~~~~~s~~----~~~~l~s~~~dg~v~~wd~~~---~~~~~~~~~~  304 (416)
T 2pm9_A          236 SDNDPSILIWDLRNANTPLQTL-NQGHQKG---ILSLDWCHQ----DEHLLLSSGRDNTVLLWNPES---AEQLSQFPAR  304 (416)
T ss_dssp             CSSSCCCCEEETTSTTSCSBCC-CSCCSSC---EEEEEECSS----CSSCEEEEESSSEEEEECSSS---CCEEEEEECS
T ss_pred             CCCCceEEEEeCCCCCCCcEEe-ecCccCc---eeEEEeCCC----CCCeEEEEeCCCCEEEeeCCC---CccceeecCC
Confidence            52 0137889988753332232 3 67777   555 89984    589999999999999999999   8899999999


Q ss_pred             ccCEEEEEEecCC-CEEEEEeCCCcEEEeeCCCCC
Q psy3599         189 ACPVLGVSFNYDE-SLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       189 ~~~v~~v~~~~~~-~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ...|.+++|+|++ .+|++++.|+.|++||+.+++
T Consensus       305 ~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          305 GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred             CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence            9999999999998 899999999999999998754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.72  E-value=2.4e-16  Score=129.60  Aligned_cols=117  Identities=20%  Similarity=0.355  Sum_probs=97.1

Q ss_pred             CCCeeEEEEeecccccCC-CCeEEEEEeCCCeEEEEEecCCCce---EEeeeeeccccCcceeEEE-eeecCcccCCCcE
Q psy3599          84 DCPITCLSWRSWISREAR-DPTLLVNIAANAVCILKVLDKEGAV---QLKRKFNVNHKSSKYQVRS-TFCPIMSFREGAC  158 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~v~i~d~~~~~---~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~  158 (223)
                      ...|.+++|+       + ++.+|++++.++  .+++||+.++.   .+. .+ ..|...   +.+ +|+|.    ...+
T Consensus       231 ~~~v~~v~~~-------p~~~~~l~s~~~dg--~i~i~d~~~~~~~~~~~-~~-~~~~~~---v~~i~~~p~----~~~~  292 (430)
T 2xyi_A          231 TAVVEDVAWH-------LLHESLFGSVADDQ--KLMIWDTRNNNTSKPSH-TV-DAHTAE---VNCLSFNPY----SEFI  292 (430)
T ss_dssp             SSCEEEEEEC-------SSCTTEEEEEETTS--EEEEEETTCSCSSSCSE-EE-ECCSSC---EEEEEECSS----CTTE
T ss_pred             CCCEeeeEEe-------CCCCCEEEEEeCCC--eEEEEECCCCCCCccee-Ee-ecCCCC---eEEEEeCCC----CCCE
Confidence            7789999999       6 788999999999  89999998662   222 33 377777   555 89994    2348


Q ss_pred             EEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCC-CEEEEEeCCCcEEEeeCCC
Q psy3599         159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDE-SLLATSDYQGLIILWSREK  220 (223)
Q Consensus       159 l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~d~~i~iwd~~~  220 (223)
                      +++|+.||.|++||++..  ..++..+..|...|.+++|+|++ .+|++++.|+.|++||++.
T Consensus       293 l~tg~~dg~v~vwd~~~~--~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          293 LATGSADKTVALWDLRNL--KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             EEEEETTSEEEEEETTCT--TSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             EEEEeCCCeEEEEeCCCC--CCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            999999999999999872  35688888999999999999998 4799999999999999976

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.3e-16  Score=142.55  Aligned_cols=118  Identities=11%  Similarity=0.067  Sum_probs=98.6

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEee----------eeeccccCcceeEEE-eeecCcc
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKR----------KFNVNHKSSKYQVRS-TFCPIMS  152 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~----------~~~~~h~~~~~~i~~-~~s~~~~  152 (223)
                      ...|++++|+       |++.+|++++.++  .+++||+.++.....          .+ .+|...   +.+ +|+|.  
T Consensus        98 ~~~V~~v~~s-------p~g~~l~sgs~dg--~V~lwd~~~~~~~~~~i~~~~~~~~~~-~~h~~~---V~sl~~sp~--  162 (902)
T 2oaj_A           98 PGKITSIDTD-------ASLDWMLIGLQNG--SMIVYDIDRDQLSSFKLDNLQKSSFFP-AARLSP---IVSIQWNPR--  162 (902)
T ss_dssp             SSCEEEEECC-------TTCSEEEEEETTS--CEEEEETTTTEEEEEEECCHHHHHTCS-SSCCCC---CCEEEEETT--
T ss_pred             CCCEEEEEEC-------CCCCEEEEEcCCC--cEEEEECCCCccccceecccccccccc-ccCCCC---eEEEEEccC--
Confidence            5789999999       9999999999999  899999988764311          11 367776   444 89994  


Q ss_pred             cCCCcEEEEecCCCcEEEEEcccCcccccceeeccc------------------ccCEEEEEEecCCCEEEEEeCCCcEE
Q psy3599         153 FREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGH------------------ACPVLGVSFNYDESLLATSDYQGLII  214 (223)
Q Consensus       153 ~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h------------------~~~v~~v~~~~~~~~l~s~s~d~~i~  214 (223)
                        ++..+++|+.||.| +||+++   ++++..+..|                  ...|.+++|+|++.+|++|+.||+|+
T Consensus       163 --~~~~l~~g~~dg~v-lWd~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~  236 (902)
T 2oaj_A          163 --DIGTVLISYEYVTL-TYSLVE---NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLV  236 (902)
T ss_dssp             --EEEEEEEECSSCEE-EEETTT---TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEE
T ss_pred             --CCCEEEEEeCCCcE-EEECCC---CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEE
Confidence              35789999999999 999998   7777777655                  57799999999999999999999999


Q ss_pred             EeeCCCCC
Q psy3599         215 LWSREKHE  222 (223)
Q Consensus       215 iwd~~~~~  222 (223)
                      +||+++++
T Consensus       237 lWd~~~g~  244 (902)
T 2oaj_A          237 FWDANSGH  244 (902)
T ss_dssp             EEETTTCC
T ss_pred             EEECCCCc
Confidence            99998765

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.71  E-value=7.3e-16  Score=126.75  Aligned_cols=146  Identities=14%  Similarity=0.247  Sum_probs=112.1

Q ss_pred             ccCCcEEEEEECC-CCceeeee---------------------eeeecCCCCeeEEEEeecccccCCCCe-EEEEEeCCC
Q psy3599          57 RSTGVIVSILCDD-LGRLSKGK---------------------RLVLSQDCPITCLSWRSWISREARDPT-LLVNIAANA  113 (223)
Q Consensus        57 ~~~~~i~~~~~~~-~~~~~~~~---------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~-~l~~~~~~~  113 (223)
                      +|.+.|..+.|+| ++.++.+.                     .+..| ...|++++|+       +++. +|++++.++
T Consensus       229 ~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~v~~i~~~-------p~~~~~l~tg~~dg  300 (430)
T 2xyi_A          229 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH-TAEVNCLSFN-------PYSEFILATGSADK  300 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC-SSCEEEEEEC-------SSCTTEEEEEETTS
T ss_pred             CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC-CCCeEEEEeC-------CCCCCEEEEEeCCC
Confidence            6777888888888 44444322                     22344 7889999999       7765 788999999


Q ss_pred             eEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcc-----------ccc
Q psy3599         114 VCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEH-----------KNA  181 (223)
Q Consensus       114 ~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~-----------~~~  181 (223)
                        .+++||+.........+. +|...   +.+ .|+|.    +..++++++.|+.|++||+.....           .++
T Consensus       301 --~v~vwd~~~~~~~~~~~~-~h~~~---v~~i~~sp~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  370 (430)
T 2xyi_A          301 --TVALWDLRNLKLKLHSFE-SHKDE---IFQVQWSPH----NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL  370 (430)
T ss_dssp             --EEEEEETTCTTSCSEEEE-CCSSC---EEEEEECSS----CTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTE
T ss_pred             --eEEEEeCCCCCCCeEEee-cCCCC---EEEEEECCC----CCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcce
Confidence              899999987433333443 78777   555 89994    236899999999999999986210           145


Q ss_pred             ceeecccccCEEEEEEecCCC-EEEEEeCCCcEEEeeCCC
Q psy3599         182 VNKLQGHACPVLGVSFNYDES-LLATSDYQGLIILWSREK  220 (223)
Q Consensus       182 ~~~~~~h~~~v~~v~~~~~~~-~l~s~s~d~~i~iwd~~~  220 (223)
                      +..+.+|...|.+++|+|++. ++++++.||.|++|++..
T Consensus       371 ~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          371 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             EEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             EEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            667788999999999999998 999999999999999864

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.71  E-value=3.7e-16  Score=129.15  Aligned_cols=119  Identities=19%  Similarity=0.180  Sum_probs=97.9

Q ss_pred             CCCeeEEEEeecccccCCCCeEE-EEEeCCCeEEEEEecCC--CceEEeeeeeccccCcceeEEE-eeecCcccCCCcEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLL-VNIAANAVCILKVLDKE--GAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACV  159 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l-~~~~~~~~~~v~i~d~~--~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l  159 (223)
                      ...|.+++|+       +++.+| ++++.++  .+++||..  ++..+.......|...   +.+ +|+|     ++.+|
T Consensus       102 ~~~v~~~~~s-------~d~~~l~~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~---v~~~~~sp-----~~~~l  164 (450)
T 2vdu_B          102 YSYIRNLRLT-------SDESRLIACADSDK--SLLVFDVDKTSKNVLKLRKRFCFSKR---PNAISIAE-----DDTTV  164 (450)
T ss_dssp             CCCEEEEEEC-------TTSSEEEEEEGGGT--EEEEEEECSSSSSCEEEEEEEECSSC---EEEEEECT-----TSSEE
T ss_pred             CCceEEEEEc-------CCCCEEEEEECCCC--eEEEEECcCCCCceeeeeecccCCCC---ceEEEEcC-----CCCEE
Confidence            3479999999       899886 8888888  89999988  6655543211244455   555 8999     79999


Q ss_pred             EEecCCCcEEEEEcccCcccccc----eeecccccCEEEEEEecC---CCEEEEEeCCCcEEEeeCCCCC
Q psy3599         160 VTGSEDSCVYFLDIQSKEHKNAV----NKLQGHACPVLGVSFNYD---ESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       160 ~sgs~dg~v~iwd~~~~~~~~~~----~~~~~h~~~v~~v~~~~~---~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ++|+.||.+++|++..   +...    ..+.+|...|.+++|+|+   +.+|++|+.|+.|++||+++++
T Consensus       165 ~~~~~~g~v~~~~~~~---~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~  231 (450)
T 2vdu_B          165 IIADKFGDVYSIDINS---IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF  231 (450)
T ss_dssp             EEEETTSEEEEEETTS---CCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT
T ss_pred             EEEeCCCcEEEEecCC---cccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc
Confidence            9999999999999987   5543    377889999999999999   9999999999999999998764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.71  E-value=1.1e-15  Score=130.08  Aligned_cols=145  Identities=14%  Similarity=0.132  Sum_probs=118.3

Q ss_pred             ccccccCCc-EEEEEECC--CCceeeee--------------------------eeeecCCCCeeEEEEeecccccCCCC
Q psy3599          53 NDQLRSTGV-IVSILCDD--LGRLSKGK--------------------------RLVLSQDCPITCLSWRSWISREARDP  103 (223)
Q Consensus        53 ~~~~~~~~~-i~~~~~~~--~~~~~~~~--------------------------~~~~~~~~~i~~l~~~~~~~~~~~~~  103 (223)
                      ..+.+|.+. |.++.|+|  +++++.+.                          .+..| ..+|.+++|+       +++
T Consensus        57 ~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s-------~~~  128 (615)
T 1pgu_A           57 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL-AGPISDISWD-------FEG  128 (615)
T ss_dssp             EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC-SSCEEEEEEC-------TTS
T ss_pred             eEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcc-cccEEEEEEe-------CCC
Confidence            344578888 99999999  88766433                          11224 7799999999       999


Q ss_pred             eEEEEEeCC----CeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCc-EEEEecCCCcEEEEEcccCc
Q psy3599         104 TLLVNIAAN----AVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGA-CVVTGSEDSCVYFLDIQSKE  177 (223)
Q Consensus       104 ~~l~~~~~~----~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~-~l~sgs~dg~v~iwd~~~~~  177 (223)
                      .+|++++.+    +  .+.+||.  +..+. .+ .+|...   +.+ .|+|     ++. .+++++.|+.|++||..+  
T Consensus       129 ~~l~~~~~~~~~~~--~v~~~d~--~~~~~-~~-~~~~~~---v~~~~~~~-----~~~~~l~~~~~d~~v~vwd~~~--  192 (615)
T 1pgu_A          129 RRLCVVGEGRDNFG--VFISWDS--GNSLG-EV-SGHSQR---INACHLKQ-----SRPMRSMTVGDDGSVVFYQGPP--  192 (615)
T ss_dssp             SEEEEEECCSSCSE--EEEETTT--CCEEE-EC-CSCSSC---EEEEEECS-----SSSCEEEEEETTTEEEEEETTT--
T ss_pred             CEEEEeccCCCCcc--EEEEEEC--CCcce-ee-ecCCcc---EEEEEECC-----CCCcEEEEEeCCCcEEEEeCCC--
Confidence            999998876    5  7888983  33443 33 488877   555 8999     565 899999999999999999  


Q ss_pred             ccccceeeccccc---CEEEEEEecC-CCEEEEEeCCCcEEEeeCCCCC
Q psy3599         178 HKNAVNKLQGHAC---PVLGVSFNYD-ESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       178 ~~~~~~~~~~h~~---~v~~v~~~~~-~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                       ++++..+.+|..   .|.+++|+|+ +.+|++++.|+.|++||+++++
T Consensus       193 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  240 (615)
T 1pgu_A          193 -FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE  240 (615)
T ss_dssp             -BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred             -cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence             889999999999   9999999999 9999999999999999998765

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.71  E-value=1.4e-16  Score=129.71  Aligned_cols=130  Identities=11%  Similarity=0.102  Sum_probs=96.2

Q ss_pred             eeecCCCCeeEEEEeecccc-cCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCc
Q psy3599          79 LVLSQDCPITCLSWRSWISR-EARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGA  157 (223)
Q Consensus        79 ~~~~~~~~i~~l~~~~~~~~-~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~  157 (223)
                      +.+| ...|.+++|+|.... .+.++.+|+++++|+  ++++||+.++..+...  .+|...+  ...+|+|.    ++.
T Consensus       132 ~~gH-~~~v~~v~~~p~~~~~~~~d~~~las~s~D~--tv~~Wd~~~~~~~~~~--~~~~~~v--~~v~~~p~----~~~  200 (393)
T 4gq1_A          132 KSGH-HNFVNDIDIADVYSADNRLAEQVIASVGDDC--TLIIWRLTDEGPILAG--YPLSSPG--ISVQFRPS----NPN  200 (393)
T ss_dssp             TTSC-SSCEEEEEEEEEECTTCSEEEEEEEEEETTS--EEEEEEEETTEEEEEE--EECSSCE--EEEEEETT----EEE
T ss_pred             cCCC-CCceEEEEEccccccccCCCCCEEEEEECCC--eEEEEECCCCceeeee--cCCCCCc--EEEEECCC----CCc
Confidence            4556 889999999942111 123889999999999  9999999877666544  4777774  33489994    346


Q ss_pred             EEEEecCCCcEEEEEcccCcccccce-------------------------eecccccCEEEEEEe-cCCCEEEEEeCCC
Q psy3599         158 CVVTGSEDSCVYFLDIQSKEHKNAVN-------------------------KLQGHACPVLGVSFN-YDESLLATSDYQG  211 (223)
Q Consensus       158 ~l~sgs~dg~v~iwd~~~~~~~~~~~-------------------------~~~~h~~~v~~v~~~-~~~~~l~s~s~d~  211 (223)
                      +|++|+.|+.|++||+++   ++...                         ...+|...+.++.|. |++..+++++.|+
T Consensus       201 ~l~~~~~d~~v~~wd~~t---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~  277 (393)
T 4gq1_A          201 QLIVGERNGNIRIFDWTL---NLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSG  277 (393)
T ss_dssp             EEEEEETTSEEEEEETTC---CC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTS
T ss_pred             eEEecCCCCEEEEEECCC---CcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCC
Confidence            899999999999999987   33221                         124677889999987 7899999999999


Q ss_pred             cEEEeeCCCCC
Q psy3599         212 LIILWSREKHE  222 (223)
Q Consensus       212 ~i~iwd~~~~~  222 (223)
                      ++++||++.++
T Consensus       278 ~i~vwd~~~~~  288 (393)
T 4gq1_A          278 AWLRWNLFANN  288 (393)
T ss_dssp             EEEEEEC----
T ss_pred             CEEEEECccCC
Confidence            99999987643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.71  E-value=3.1e-16  Score=124.71  Aligned_cols=123  Identities=9%  Similarity=0.159  Sum_probs=100.1

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCe-EEEEEeC---CCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcc
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPT-LLVNIAA---NAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMS  152 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~-~l~~~~~---~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~  152 (223)
                      ....| ...|.+++|+       |++. ++++++.   ++  .+++||..++....... .+|...   +.+ .|+|   
T Consensus        13 ~~~~h-~~~v~~~~~~-------p~~~~l~~~~s~~~~d~--~v~iw~~~~~~~~~~~~-~~~~~~---v~~~~~~~---   75 (357)
T 3i2n_A           13 IQKGF-NYTVFDCKWV-------PCSAKFVTMGNFARGTG--VIQLYEIQHGDLKLLRE-IEKAKP---IKCGTFGA---   75 (357)
T ss_dssp             EEEEC-SSCEEEEEEC-------TTSSEEEEEEC--CCCE--EEEEEEECSSSEEEEEE-EEESSC---EEEEECTT---
T ss_pred             hccCC-CCceEEEEEc-------CCCceEEEecCccCCCc--EEEEEeCCCCcccceee-ecccCc---EEEEEEcC---
Confidence            34556 8999999999       8774 5556665   77  89999998876544332 377777   555 8999   


Q ss_pred             cCC---CcEEEEecCCCcEEEEEcccCcccc-cceeecccccCEEEEEE------ecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         153 FRE---GACVVTGSEDSCVYFLDIQSKEHKN-AVNKLQGHACPVLGVSF------NYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       153 ~~~---~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~------~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                        +   +.++++|+.||.|++||+.+   ++ ++..+.+|...|.++.|      +|+++.|++++.|+.|++||+++++
T Consensus        76 --~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~  150 (357)
T 3i2n_A           76 --TSLQQRYLATGDFGGNLHIWNLEA---PEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD  150 (357)
T ss_dssp             --CCTTTCCEEEEETTSCEEEECTTS---CSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS
T ss_pred             --CCCCCceEEEecCCCeEEEEeCCC---CCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC
Confidence              5   69999999999999999998   66 88899999999999965      6789999999999999999998764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.70  E-value=1.8e-16  Score=129.07  Aligned_cols=113  Identities=10%  Similarity=0.144  Sum_probs=92.4

Q ss_pred             CCCeEEEEEeCCCeEEEEEecCCCceEEe----eeeeccccCcceeEEE-eeecCcc---cCCCcEEEEecCCCcEEEEE
Q psy3599         101 RDPTLLVNIAANAVCILKVLDKEGAVQLK----RKFNVNHKSSKYQVRS-TFCPIMS---FREGACVVTGSEDSCVYFLD  172 (223)
Q Consensus       101 ~~~~~l~~~~~~~~~~v~i~d~~~~~~~~----~~~~~~h~~~~~~i~~-~~s~~~~---~~~~~~l~sgs~dg~v~iwd  172 (223)
                      +++.+|++++.|+  .+++||..++....    ..+ .+|.+.   |.+ +|+|...   ..++.+|++|+.|++|++||
T Consensus        99 ~~~~~las~~~d~--~v~lw~~~~~~~~~~~~~~~~-~gH~~~---v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd  172 (393)
T 4gq1_A           99 VYSLFLACVCQDN--TVRLIITKNETIITQHVLGGK-SGHHNF---VNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR  172 (393)
T ss_dssp             EEEEEEEEEETTS--CEEEEEEETTEEEEEEEECTT-TSCSSC---EEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred             CCCCEEEEEeCCC--cEEEEECCCCccceeeeeccc-CCCCCc---eEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence            6677899999999  89999988775432    123 489888   555 7887321   12678999999999999999


Q ss_pred             cccCcccccceeecccccCEEEEEEecCC-CEEEEEeCCCcEEEeeCCCCC
Q psy3599         173 IQSKEHKNAVNKLQGHACPVLGVSFNYDE-SLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       173 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +.+   ..++..+..|...|.+++|+|++ .+|++++.|++|++||+++++
T Consensus       173 ~~~---~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~  220 (393)
T 4gq1_A          173 LTD---EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNL  220 (393)
T ss_dssp             EET---TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC
T ss_pred             CCC---CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCc
Confidence            998   77777778899999999999986 589999999999999998764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.70  E-value=1.9e-15  Score=122.15  Aligned_cols=147  Identities=15%  Similarity=0.161  Sum_probs=112.0

Q ss_pred             ccCCcEEEEEECC-CCceeeee----------------eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEE
Q psy3599          57 RSTGVIVSILCDD-LGRLSKGK----------------RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKV  119 (223)
Q Consensus        57 ~~~~~i~~~~~~~-~~~~~~~~----------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i  119 (223)
                      +|.+.|.++.|++ ++.++.+.                .........+.++.|++    ..+++.++++++.++  .+++
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~v~~  170 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSP----VSTKHCLVAVGTRGP--KVQL  170 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECS----SCSSCCEEEEEESSS--SEEE
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeec----CCCCCcEEEEEcCCC--eEEE
Confidence            3778899999988 55554332                11122367888999981    112556899999888  8999


Q ss_pred             ecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCc-EEEEecCCCcEEEEEcccCcccc-cceee-----------
Q psy3599         120 LDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGA-CVVTGSEDSCVYFLDIQSKEHKN-AVNKL-----------  185 (223)
Q Consensus       120 ~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~-~l~sgs~dg~v~iwd~~~~~~~~-~~~~~-----------  185 (223)
                      ||+.++..+.. + .+|...   +.+ .|+|     ++. ++++|+.||.|++||++.   .. ++..+           
T Consensus       171 ~d~~~~~~~~~-~-~~~~~~---v~~~~~~~-----~~~~ll~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~~  237 (408)
T 4a11_B          171 CDLKSGSCSHI-L-QGHRQE---ILAVSWSP-----RYDYILATASADSRVKLWDVRR---ASGCLITLDQHNGKKSQAV  237 (408)
T ss_dssp             EESSSSCCCEE-E-CCCCSC---EEEEEECS-----SCTTEEEEEETTSCEEEEETTC---SSCCSEECCTTTTCSCCCT
T ss_pred             EeCCCcceeee-e-cCCCCc---EEEEEECC-----CCCcEEEEEcCCCcEEEEECCC---CCcccccccccccccceee
Confidence            99988765553 3 378777   555 8999     566 699999999999999987   33 33333           


Q ss_pred             ----cccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         186 ----QGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       186 ----~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                          .+|...|.+++|+|++.+|++++.||.|++||+++++
T Consensus       238 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  278 (408)
T 4a11_B          238 ESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE  278 (408)
T ss_dssp             TTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             ccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Confidence                6788999999999999999999999999999998764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.70  E-value=9.4e-17  Score=132.49  Aligned_cols=116  Identities=16%  Similarity=0.180  Sum_probs=96.2

Q ss_pred             CCCeeEEEEeecccccCCCCeEEE----EEeCCCeEEEEEecCCCc--------eEE--eeeeeccccCcceeEEE-eee
Q psy3599          84 DCPITCLSWRSWISREARDPTLLV----NIAANAVCILKVLDKEGA--------VQL--KRKFNVNHKSSKYQVRS-TFC  148 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~----~~~~~~~~~v~i~d~~~~--------~~~--~~~~~~~h~~~~~~i~~-~~s  148 (223)
                      ...|.+++|+       +++.+|+    +++.++  .+++||+.++        ..+  ...+ .+|...   +.+ +|+
T Consensus        92 ~~~v~~l~~s-------pdg~~lav~~~sgs~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~h~~~---V~~v~~~  158 (434)
T 2oit_A           92 KFPIHHLALS-------CDNLTLSACMMSSEYGS--IIAFFDVRTFSNEAKQQKRPFAYHKLL-KDAGGM---VIDMKWN  158 (434)
T ss_dssp             SSCEEEEEEC-------TTSCEEEEEEEETTTEE--EEEEEEHHHHHCTTCSSCCCSEEEECC-CSGGGS---EEEEEEC
T ss_pred             CCcccEEEEc-------CCCCEEEEEEeccCCCc--eEEEEEccccccCCcCCcceeeeeecc-CCCCCc---eEEEEEC
Confidence            5679999999       9999999    677788  8999997654        111  1222 367777   555 899


Q ss_pred             cCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         149 PIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       149 ~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      |.    ++.+|++++.||.|++||+++   +..+....+|...|.+++|+|+|.+|++|+.||.|++||++
T Consensus       159 p~----~~~~las~s~Dg~v~iwD~~~---~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          159 PT----VPSMVAVCLADGSIAVLQVTE---TVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             SS----CTTEEEEEETTSCEEEEEESS---SEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             CC----CCCEEEEEECCCeEEEEEcCC---CcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence            94    388999999999999999998   66666677789999999999999999999999999999987

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.69  E-value=1.3e-15  Score=118.99  Aligned_cols=119  Identities=16%  Similarity=0.288  Sum_probs=98.0

Q ss_pred             eeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCc
Q psy3599          79 LVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGA  157 (223)
Q Consensus        79 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~  157 (223)
                      +..| ..++.++.|.|      +++.+|++++.++  .+++||...  .+. .+...|...   +.+ .|+|     ++.
T Consensus       138 ~~~~-~~~v~~~~~~~------~~~~~l~~~~~d~--~i~i~d~~~--~~~-~~~~~~~~~---i~~~~~~~-----~~~  197 (313)
T 3odt_A          138 LQAH-NASVWDAKVVS------FSENKFLTASADK--TIKLWQNDK--VIK-TFSGIHNDV---VRHLAVVD-----DGH  197 (313)
T ss_dssp             EECC-SSCEEEEEEEE------TTTTEEEEEETTS--CEEEEETTE--EEE-EECSSCSSC---EEEEEEEE-----TTE
T ss_pred             cccC-CCceeEEEEcc------CCCCEEEEEECCC--CEEEEecCc--eEE-EEeccCccc---EEEEEEcC-----CCe
Confidence            3445 88999999982      4899999999988  899999432  333 232236666   555 8998     566


Q ss_pred             EEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         158 CVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       158 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                       +++|+.||.|++||+++   ++++..+.+|...|.+++|+|++ .|++++.||.|++||+++++
T Consensus       198 -~~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~  257 (313)
T 3odt_A          198 -FISCSNDGLIKLVDMHT---GDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS  257 (313)
T ss_dssp             -EEEEETTSEEEEEETTT---CCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCC
T ss_pred             -EEEccCCCeEEEEECCc---hhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCc
Confidence             99999999999999999   88999999999999999999999 58899999999999998865

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.69  E-value=4.7e-16  Score=142.73  Aligned_cols=122  Identities=20%  Similarity=0.262  Sum_probs=108.8

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      .+..| ...|++++|+       +++.+|++++.++  .+++||..++..+...  .+|...   +.+ +|+|     ++
T Consensus       610 ~~~~h-~~~v~~~~~s-------~~~~~l~s~~~d~--~i~vw~~~~~~~~~~~--~~h~~~---v~~~~~s~-----~~  669 (1249)
T 3sfz_A          610 VVRPH-TDAVYHACFS-------QDGQRIASCGADK--TLQVFKAETGEKLLDI--KAHEDE---VLCCAFSS-----DD  669 (1249)
T ss_dssp             EECCC-SSCEEEEEEC-------TTSSEEEEEETTS--CEEEEETTTCCEEEEE--CCCSSC---EEEEEECT-----TS
T ss_pred             EEecc-cccEEEEEEC-------CCCCEEEEEeCCC--eEEEEECCCCCEEEEe--ccCCCC---EEEEEEec-----CC
Confidence            34566 8999999999       9999999999999  8999999998776643  488888   555 8999     79


Q ss_pred             cEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEec--CCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         157 ACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNY--DESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .++++|+.||.|++||+.+   ++++..+.+|...|.++.|+|  ++.++++|+.|+.|++||+++++
T Consensus       670 ~~l~s~~~d~~v~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~  734 (1249)
T 3sfz_A          670 SYIATCSADKKVKIWDSAT---GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE  734 (1249)
T ss_dssp             SEEEEEETTSEEEEEETTT---CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS
T ss_pred             CEEEEEeCCCeEEEEECCC---CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc
Confidence            9999999999999999999   899999999999999999999  56689999999999999998764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.69  E-value=3.1e-15  Score=117.13  Aligned_cols=130  Identities=19%  Similarity=0.310  Sum_probs=105.5

Q ss_pred             CCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeec
Q psy3599          70 LGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCP  149 (223)
Q Consensus        70 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~  149 (223)
                      +|+++.......| ...|++++|+       +++.+|++|+.|+  .+++|+..+++.+...  .+|...   +.+ +++
T Consensus        54 tg~~~~~~~~~~~-~~~V~~v~~~-------~~~~~l~sgs~Dg--~v~iw~~~~~~~~~~~--~~h~~~---~~~-~~~  117 (318)
T 4ggc_A           54 SGDILQLLQMEQP-GEYISSVAWI-------KEGNYLAVGTSSA--EVQLWDVQQQKRLRNM--TSHSAR---VGS-LSW  117 (318)
T ss_dssp             TCCEEEEEECCST-TCCEEEEEEC-------TTSSEEEEEETTS--EEEEEETTTTEEEEEE--ECCSSC---EEE-EEE
T ss_pred             CCCEEEEEEecCC-CCeEEEEEEC-------CCCCEEEEEECCC--cEEEeecCCceeEEEe--cCccce---EEE-eec
Confidence            3444443233334 7789999999       9999999999999  9999999999877643  488776   333 344


Q ss_pred             CcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         150 IMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       150 ~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                           ++..+++|+.++.+++|+....  ...+..+.+|...+..+.+++++.++++++.|+.|++||+++++
T Consensus       118 -----~~~~l~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  183 (318)
T 4ggc_A          118 -----NSYILSSGSRSGHIHHHDVRVA--EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  183 (318)
T ss_dssp             -----ETTEEEEEETTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred             -----CCCEEEEEecCCceEeeecCCC--ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence                 5789999999999999998872  35567788999999999999999999999999999999998754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.69  E-value=2.5e-15  Score=123.11  Aligned_cols=117  Identities=21%  Similarity=0.342  Sum_probs=100.7

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS  163 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs  163 (223)
                      ...|++++|+       ++|.+|++|+.|+  .+++||..++..+...  .+|...   +.+ +++     ++.++++|+
T Consensus       147 ~~~V~sv~fs-------pdg~~lasgs~Dg--~v~iWd~~~~~~~~~~--~~h~~~---v~~-~s~-----~~~~l~sgs  206 (420)
T 4gga_A          147 GEYISSVAWI-------KEGNYLAVGTSSA--EVQLWDVQQQKRLRNM--TSHSAR---VGS-LSW-----NSYILSSGS  206 (420)
T ss_dssp             TCCEEEEEEC-------TTSSEEEEEETTS--CEEEEETTTTEEEEEE--CCCSSC---EEE-EEE-----ETTEEEEEE
T ss_pred             CCcEEEEEEC-------CCCCEEEEEECCC--eEEEEEcCCCcEEEEE--eCCCCc---eEE-Eee-----CCCEEEEEe
Confidence            6789999999       9999999999999  8999999999877643  488777   443 233     478999999


Q ss_pred             CCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         164 EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       164 ~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .|+.+++||....  ...+..+.+|...+..+.|+|++..+++++.|+.+++||..+++
T Consensus       207 ~d~~i~~~d~~~~--~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~  263 (420)
T 4gga_A          207 RSGHIHHHDVRVA--EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  263 (420)
T ss_dssp             TTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred             CCCceeEeeeccc--ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccc
Confidence            9999999998872  34567888999999999999999999999999999999998754

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.68  E-value=2.1e-15  Score=124.70  Aligned_cols=120  Identities=21%  Similarity=0.341  Sum_probs=101.3

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      .+..|....+.++.+.         +.+|++++.|+  .+++||..++..+.. + .+|...   +.+ .|+|     ++
T Consensus       116 ~l~~h~~~v~~~~~~~---------~~~l~sgs~dg--~i~vwd~~~~~~~~~-~-~~h~~~---V~~l~~~~-----~~  174 (464)
T 3v7d_B          116 TLRGHMTSVITCLQFE---------DNYVITGADDK--MIRVYDSINKKFLLQ-L-SGHDGG---VWALKYAH-----GG  174 (464)
T ss_dssp             EEECCSSSCEEEEEEE---------TTEEEEEETTS--CEEEEETTTTEEEEE-E-CCCSSC---EEEEEECS-----TT
T ss_pred             EEcCCCCCcEEEEEEC---------CCEEEEEcCCC--cEEEEECCCCcEEEE-E-eCCCcC---EEEEEEcC-----CC
Confidence            5667744456777765         56999999999  899999999876664 4 489888   555 8888     45


Q ss_pred             cEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEec--CCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         157 ACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNY--DESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                       .+++|+.||.|++||+++   ++++..+.+|...|.+++|++  ++.++++++.|+.|++||+++++
T Consensus       175 -~l~s~s~dg~i~vwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~  238 (464)
T 3v7d_B          175 -ILVSGSTDRTVRVWDIKK---GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES  238 (464)
T ss_dssp             -EEEEEETTSCEEEEETTT---TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCC
T ss_pred             -EEEEEeCCCCEEEEECCC---CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCc
Confidence             999999999999999999   889999999999999999994  67899999999999999998754

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.67  E-value=6.2e-16  Score=122.45  Aligned_cols=116  Identities=14%  Similarity=0.132  Sum_probs=98.6

Q ss_pred             eecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCce---EEeeeeeccccCcceeEEE-eeecCcccCC
Q psy3599          80 VLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAV---QLKRKFNVNHKSSKYQVRS-TFCPIMSFRE  155 (223)
Q Consensus        80 ~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~---~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~  155 (223)
                      ..| ...|++++|+       +++.+|++++.++  .+++|+..++.   .+. .+ .+|...   +.+ +|+|     +
T Consensus         8 ~~h-~~~v~~~~~s-------~~~~~l~~~~~d~--~v~iw~~~~~~~~~~~~-~~-~~~~~~---v~~~~~~~-----~   67 (342)
T 1yfq_A            8 QAP-KDYISDIKII-------PSKSLLLITSWDG--SLTVYKFDIQAKNVDLL-QS-LRYKHP---LLCCNFID-----N   67 (342)
T ss_dssp             SCC-SSCEEEEEEE-------GGGTEEEEEETTS--EEEEEEEETTTTEEEEE-EE-EECSSC---EEEEEEEE-----S
T ss_pred             cCC-CCcEEEEEEc-------CCCCEEEEEcCCC--eEEEEEeCCCCccccce-ee-eecCCc---eEEEEECC-----C
Confidence            345 8899999999       8999999999999  89999987665   222 22 377777   555 8999     7


Q ss_pred             Cc-EEEEecCCCcEEEEEc-ccCcccccceeecc--cccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         156 GA-CVVTGSEDSCVYFLDI-QSKEHKNAVNKLQG--HACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       156 ~~-~l~sgs~dg~v~iwd~-~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      +. ++++|+.||.|++||+ ..   ++ ...+.+  |...|.+++|+| +..|++++.|+.|++||+++
T Consensus        68 ~~~~l~~~~~dg~i~~wd~~~~---~~-~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~  131 (342)
T 1yfq_A           68 TDLQIYVGTVQGEILKVDLIGS---PS-FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             SSEEEEEEETTSCEEEECSSSS---SS-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHH
T ss_pred             CCcEEEEEcCCCeEEEEEeccC---Cc-eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccc
Confidence            99 9999999999999999 77   54 477788  999999999999 99999999999999999875

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.65  E-value=6.7e-15  Score=116.49  Aligned_cols=117  Identities=15%  Similarity=0.130  Sum_probs=95.1

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCC-ceEEeeeeeccccCcceeEEE-eeec-CcccCCCcEEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEG-AVQLKRKFNVNHKSSKYQVRS-TFCP-IMSFREGACVV  160 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~-~~~~~~~~~~~h~~~~~~i~~-~~s~-~~~~~~~~~l~  160 (223)
                      ...|.+++|+       +++  +++++.++  .+++||..+ +..........|...   +.+ .|+| .     +.+++
T Consensus       150 ~~~v~~~~~~-------~~~--l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~---i~~i~~~~~~-----~~~l~  210 (342)
T 1yfq_A          150 KNKIFTMDTN-------SSR--LIVGMNNS--QVQWFRLPLCEDDNGTIEESGLKYQ---IRDVALLPKE-----QEGYA  210 (342)
T ss_dssp             CCCEEEEEEC-------SSE--EEEEESTT--EEEEEESSCCTTCCCEEEECSCSSC---EEEEEECSGG-----GCEEE
T ss_pred             CCceEEEEec-------CCc--EEEEeCCC--eEEEEECCccccccceeeecCCCCc---eeEEEECCCC-----CCEEE
Confidence            6789999999       666  78888888  899999987 433222222356555   555 8888 5     78999


Q ss_pred             EecCCCcEEEEEcccCccc------ccceeeccccc---------CEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         161 TGSEDSCVYFLDIQSKEHK------NAVNKLQGHAC---------PVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       161 sgs~dg~v~iwd~~~~~~~------~~~~~~~~h~~---------~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +|+.||.+++|+++.   .      +....+..|..         .|.+++|+|++.+|++++.||.|++||+++++
T Consensus       211 ~~~~dg~i~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  284 (342)
T 1yfq_A          211 CSSIDGRVAVEFFDD---QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             EEETTSEEEEEECCT---TCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             EEecCCcEEEEEEcC---CCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence            999999999999988   5      67778888765         99999999999999999999999999998764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.64  E-value=1e-14  Score=120.11  Aligned_cols=116  Identities=23%  Similarity=0.374  Sum_probs=93.5

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      .+..| ..+|.++.|+         +.+|++++.|+  .+++||..++..+.. + .+|...   +.+ .|+       +
T Consensus       154 ~~~~h-~~~v~~~~~~---------~~~l~s~~~dg--~i~vwd~~~~~~~~~-~-~~h~~~---v~~~~~~-------~  209 (445)
T 2ovr_B          154 TLVGH-TGGVWSSQMR---------DNIIISGSTDR--TLKVWNAETGECIHT-L-YGHTST---VRCMHLH-------E  209 (445)
T ss_dssp             ECCCC-SSCEEEEEEE---------TTEEEEEETTS--CEEEEETTTTEEEEE-E-CCCSSC---EEEEEEE-------T
T ss_pred             EEcCC-CCCEEEEEec---------CCEEEEEeCCC--eEEEEECCcCcEEEE-E-CCCCCc---EEEEEec-------C
Confidence            34556 7899999997         45899999888  899999998876654 3 478777   554 563       5


Q ss_pred             cEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         157 ACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ..+++|+.||.|++||+.+   ++++..+.+|...|.++.|  ++..+++|+.||.|++||+++++
T Consensus       210 ~~l~s~s~dg~i~~wd~~~---~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~  270 (445)
T 2ovr_B          210 KRVVSGSRDATLRVWDIET---GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETET  270 (445)
T ss_dssp             TEEEEEETTSEEEEEESSS---CCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTE
T ss_pred             CEEEEEeCCCEEEEEECCC---CcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCc
Confidence            6788999999999999988   7888888888888988888  67788888889999999887653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.64  E-value=5e-15  Score=121.75  Aligned_cols=116  Identities=23%  Similarity=0.389  Sum_probs=92.9

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREG  156 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~  156 (223)
                      .+..| ...|.++.|+         +.+|++++.++  .+++||..++..+.. + .+|...   +.+ .|       ++
T Consensus       291 ~~~~~-~~~v~~~~~~---------~~~l~~g~~dg--~i~iwd~~~~~~~~~-~-~~h~~~---v~~~~~-------~~  346 (435)
T 1p22_A          291 TLNGH-KRGIACLQYR---------DRLVVSGSSDN--TIRLWDIECGACLRV-L-EGHEEL---VRCIRF-------DN  346 (435)
T ss_dssp             EEECC-SSCEEEEEEE---------TTEEEEEETTS--CEEEEETTTCCEEEE-E-CCCSSC---EEEEEC-------CS
T ss_pred             EEcCC-CCcEEEEEeC---------CCEEEEEeCCC--eEEEEECCCCCEEEE-E-eCCcCc---EEEEEe-------cC
Confidence            34445 7788888886         57899999888  899999998877664 3 478777   554 55       47


Q ss_pred             cEEEEecCCCcEEEEEcccCcccc---------cceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         157 ACVVTGSEDSCVYFLDIQSKEHKN---------AVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~~~~~~---------~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .++++|+.||.|++||+.+   +.         ++..+.+|...|.+++|  ++..|++++.||.|++||+.+..
T Consensus       347 ~~l~sg~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          347 KRIVSGAYDGKIKVWDLVA---ALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             SEEEEEETTSCEEEEEHHH---HTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred             CEEEEEeCCCcEEEEECCC---CCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence            8999999999999999987   55         77888999999999999  78889999999999999987643

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.63  E-value=4.2e-15  Score=119.32  Aligned_cols=124  Identities=12%  Similarity=0.190  Sum_probs=96.7

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEE-EEEecCCCceEEeeeeecc-ccCcceeEEE-eeecCcccC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCI-LKVLDKEGAVQLKRKFNVN-HKSSKYQVRS-TFCPIMSFR  154 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-v~i~d~~~~~~~~~~~~~~-h~~~~~~i~~-~~s~~~~~~  154 (223)
                      .+..| ..+|++++|+       |++.+|++++.|+  . +++||..++..+.... .+ |...   +.+ +|+|     
T Consensus       190 ~~~~h-~~~v~~~~~s-------~~g~~l~s~s~d~--~~v~iwd~~~~~~~~~~~-~g~h~~~---v~~~~~s~-----  250 (355)
T 3vu4_A          190 LIKAH-TNPIKMVRLN-------RKSDMVATCSQDG--TIIRVFKTEDGVLVREFR-RGLDRAD---VVDMKWST-----  250 (355)
T ss_dssp             EECCC-SSCEEEEEEC-------TTSSEEEEEETTC--SEEEEEETTTCCEEEEEE-CTTCCSC---EEEEEECT-----
T ss_pred             EEEcc-CCceEEEEEC-------CCCCEEEEEeCCC--CEEEEEECCCCcEEEEEE-cCCCCCc---EEEEEECC-----
Confidence            45566 8899999999       9999999999998  8 9999999887776542 25 7776   665 8999     


Q ss_pred             CCcEEEEecCCCcEEEEEcccCcccccceeec---------------------ccccCEEEEEEecCCCEEEEEeCCCcE
Q psy3599         155 EGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQ---------------------GHACPVLGVSFNYDESLLATSDYQGLI  213 (223)
Q Consensus       155 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~---------------------~h~~~v~~v~~~~~~~~l~s~s~d~~i  213 (223)
                      ++.+|++|+.|+.|++||++... ......+.                     .+......++|++++..+++++.||.+
T Consensus       251 ~~~~l~s~s~d~~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~  329 (355)
T 3vu4_A          251 DGSKLAVVSDKWTLHVFEIFNDQ-DNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMI  329 (355)
T ss_dssp             TSCEEEEEETTCEEEEEESSCCS-CCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEE
T ss_pred             CCCEEEEEECCCEEEEEEccCCC-CcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeE
Confidence            79999999999999999997611 11111111                     112223668999999999999999999


Q ss_pred             EEeeCCCC
Q psy3599         214 ILWSREKH  221 (223)
Q Consensus       214 ~iwd~~~~  221 (223)
                      ++|++..+
T Consensus       330 ~~~~~~~~  337 (355)
T 3vu4_A          330 ETFKVVFD  337 (355)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEcC
Confidence            99998654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.63  E-value=3.4e-14  Score=116.98  Aligned_cols=115  Identities=25%  Similarity=0.407  Sum_probs=97.2

Q ss_pred             eeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCc
Q psy3599          79 LVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGA  157 (223)
Q Consensus        79 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~  157 (223)
                      +..| ...|.++.|+         +..|++++.++  .+++||..++..+.. + .+|...   +.+ .|       ++.
T Consensus       195 ~~~h-~~~v~~~~~~---------~~~l~s~s~dg--~i~~wd~~~~~~~~~-~-~~~~~~---v~~~~~-------~~~  250 (445)
T 2ovr_B          195 LYGH-TSTVRCMHLH---------EKRVVSGSRDA--TLRVWDIETGQCLHV-L-MGHVAA---VRCVQY-------DGR  250 (445)
T ss_dssp             ECCC-SSCEEEEEEE---------TTEEEEEETTS--EEEEEESSSCCEEEE-E-ECCSSC---EEEEEE-------CSS
T ss_pred             ECCC-CCcEEEEEec---------CCEEEEEeCCC--EEEEEECCCCcEEEE-E-cCCccc---EEEEEE-------CCC
Confidence            3445 7889999987         45689999999  899999998876654 3 478777   554 55       478


Q ss_pred             EEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         158 CVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       158 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+++|+.||.|++||+++   ++++..+.+|...|.++.|  ++..+++++.|+.|++||+++++
T Consensus       251 ~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~  310 (445)
T 2ovr_B          251 RVVSGAYDFMVKVWDPET---ETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN  310 (445)
T ss_dssp             CEEEEETTSCEEEEEGGG---TEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC
T ss_pred             EEEEEcCCCEEEEEECCC---CcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC
Confidence            899999999999999999   8899999999999999998  78899999999999999998765

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.63  E-value=1.4e-14  Score=119.13  Aligned_cols=113  Identities=20%  Similarity=0.397  Sum_probs=96.0

Q ss_pred             eecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcE
Q psy3599          80 VLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGAC  158 (223)
Q Consensus        80 ~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~  158 (223)
                      ..| ...|.+++|.         +.+|++++.++  .+++||..++..+.. + .+|...   +.+ .+       ++.+
T Consensus       253 ~~~-~~~v~~~~~~---------~~~l~s~~~dg--~i~vwd~~~~~~~~~-~-~~~~~~---v~~~~~-------~~~~  308 (435)
T 1p22_A          253 VGH-RAAVNVVDFD---------DKYIVSASGDR--TIKVWNTSTCEFVRT-L-NGHKRG---IACLQY-------RDRL  308 (435)
T ss_dssp             CCC-SSCEEEEEEE---------TTEEEEEETTS--EEEEEETTTCCEEEE-E-ECCSSC---EEEEEE-------ETTE
T ss_pred             cCC-CCcEEEEEeC---------CCEEEEEeCCC--eEEEEECCcCcEEEE-E-cCCCCc---EEEEEe-------CCCE
Confidence            344 7788888876         67899999999  899999998876664 3 478777   554 55       3679


Q ss_pred             EEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       159 l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      +++|+.||.|++||+++   ++++..+.+|...|.+++|  ++.+|++|+.||.|++||++++
T Consensus       309 l~~g~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~  366 (435)
T 1p22_A          309 VVSGSSDNTIRLWDIEC---GACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA  366 (435)
T ss_dssp             EEEEETTSCEEEEETTT---CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred             EEEEeCCCeEEEEECCC---CCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence            99999999999999999   8999999999999999998  7889999999999999998643

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.58  E-value=2.6e-14  Score=113.09  Aligned_cols=97  Identities=7%  Similarity=0.005  Sum_probs=66.6

Q ss_pred             EEEEecCCC-ceEEeeeeeccccCcceeEEEeeec-CcccCCCcEEEEecCCCcEEEEEcccCcccccceeeccccc---
Q psy3599         116 ILKVLDKEG-AVQLKRKFNVNHKSSKYQVRSTFCP-IMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHAC---  190 (223)
Q Consensus       116 ~v~i~d~~~-~~~~~~~~~~~h~~~~~~i~~~~s~-~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~---  190 (223)
                      .|++|++.+ ++.+.. . .+|...+..+  +|+| .+   ++..|++|+.|++|++||+.+   ++++.++.+|..   
T Consensus       158 ~V~~~~~s~dG~~~~s-~-~~~~~~v~~l--~fs~~~g---~~~~LaSgS~D~TIkIWDl~T---Gk~l~tL~g~~~~v~  227 (356)
T 2w18_A          158 QVEVMTFAEDGGGKEN-Q-FLMPPEETIL--TFAEVQG---MQEALLGTTIMNNIVIWNLKT---GQLLKKMHIDDSYQA  227 (356)
T ss_dssp             EEEEEEECTTSCEEEE-E-EECCCSSCEE--EEEEEET---STTEEEEEETTSEEEEEETTT---CCEEEEEECCC---C
T ss_pred             cEEEEEECCCCceeee-e-ccCCCceeeE--EeeccCC---CCceEEEecCCCcEEEEECCC---CcEEEEEcCCCccee
Confidence            566666633 433332 2 2555553212  3444 11   568999999999999999999   999999987543   


Q ss_pred             CEEEEEEecCCCEE------------EEEeCCCcEEEeeCCCCC
Q psy3599         191 PVLGVSFNYDESLL------------ATSDYQGLIILWSREKHE  222 (223)
Q Consensus       191 ~v~~v~~~~~~~~l------------~s~s~d~~i~iwd~~~~~  222 (223)
                      .+.+++|+|++.++            ++|+.|++|++||..+++
T Consensus       228 ~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk  271 (356)
T 2w18_A          228 SVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL  271 (356)
T ss_dssp             CCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred             eeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence            67788999999876            668889999999988764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.55  E-value=2.4e-13  Score=112.07  Aligned_cols=141  Identities=14%  Similarity=0.124  Sum_probs=104.3

Q ss_pred             ccCCcEEEEEECCCCceee----ee-------e----------------------eeecCCCCeeEEEEeecccccCCC-
Q psy3599          57 RSTGVIVSILCDDLGRLSK----GK-------R----------------------LVLSQDCPITCLSWRSWISREARD-  102 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~----~~-------~----------------------~~~~~~~~i~~l~~~~~~~~~~~~-  102 (223)
                      .+.+.|.+++|+++|+.+.    +.       .                      +..| ...|.+++|+       |+ 
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~~-------p~~  161 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDA-GGMVIDMKWN-------PTV  161 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSG-GGSEEEEEEC-------SSC
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCC-CCceEEEEEC-------CCC
Confidence            3456799999999888776    21       0                      1113 6789999999       66 


Q ss_pred             CeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCccccc
Q psy3599         103 PTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNA  181 (223)
Q Consensus       103 ~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~  181 (223)
                      +.+|++++.|+  .+++||+.++..+...  .+|...   +.+ +|+|     ++.+|++|+.||.|++||.+.   . .
T Consensus       162 ~~~las~s~Dg--~v~iwD~~~~~~~~~~--~~~~~~---v~~v~wsp-----dg~~lasgs~dg~v~iwd~~~---~-~  225 (434)
T 2oit_A          162 PSMVAVCLADG--SIAVLQVTETVKVCAT--LPSTVA---VTSVCWSP-----KGKQLAVGKQNGTVVQYLPTL---Q-E  225 (434)
T ss_dssp             TTEEEEEETTS--CEEEEEESSSEEEEEE--ECGGGC---EEEEEECT-----TSSCEEEEETTSCEEEECTTC---C-E
T ss_pred             CCEEEEEECCC--eEEEEEcCCCcceeec--cCCCCc---eeEEEEcC-----CCCEEEEEcCCCcEEEEccCC---c-c
Confidence            88999999999  8999999887554432  367766   555 8999     799999999999999999873   1 1


Q ss_pred             ceeec-------ccccCEEEEEEecCCCEEEEEe-CCC------cEEEeeCCCC
Q psy3599         182 VNKLQ-------GHACPVLGVSFNYDESLLATSD-YQG------LIILWSREKH  221 (223)
Q Consensus       182 ~~~~~-------~h~~~v~~v~~~~~~~~l~s~s-~d~------~i~iwd~~~~  221 (223)
                      ...+.       .|...|.++.|++++.++++.+ .||      .+++|++++.
T Consensus       226 ~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          226 KKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             cccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            22222       2334799999999887775533 443      3899999864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.51  E-value=2.4e-12  Score=103.78  Aligned_cols=116  Identities=15%  Similarity=0.146  Sum_probs=90.7

Q ss_pred             CCCeeEEEEeecccccCCCCeEEE-EEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEE-EE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLV-NIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACV-VT  161 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~-~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l-~s  161 (223)
                      ...+.+++|+       +++.+|+ +++.++  .+++||..++..+...   .+...+  ....|+|     ++..+ ++
T Consensus        73 ~~~v~~~~~s-------pdg~~l~~~~~~~~--~v~v~d~~~~~~~~~~---~~~~~~--~~~~~s~-----dg~~l~~~  133 (391)
T 1l0q_A           73 GSSPQGVAVS-------PDGKQVYVTNMASS--TLSVIDTTSNTVAGTV---KTGKSP--LGLALSP-----DGKKLYVT  133 (391)
T ss_dssp             SSSEEEEEEC-------TTSSEEEEEETTTT--EEEEEETTTTEEEEEE---ECSSSE--EEEEECT-----TSSEEEEE
T ss_pred             CCCccceEEC-------CCCCEEEEEECCCC--EEEEEECCCCeEEEEE---eCCCCc--ceEEECC-----CCCEEEEE
Confidence            4489999999       8888775 555668  8999999988766542   233332  3338999     67766 78


Q ss_pred             ecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEE-EEEeCCCcEEEeeCCCCC
Q psy3599         162 GSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLL-ATSDYQGLIILWSREKHE  222 (223)
Q Consensus       162 gs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~s~d~~i~iwd~~~~~  222 (223)
                      ++.|+.|++||+.+   ++.+..+..+. .+.+++|+|++..+ ++++.++.|++||+++++
T Consensus       134 ~~~~~~v~~~d~~~---~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~  191 (391)
T 1l0q_A          134 NNGDKTVSVINTVT---KAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS  191 (391)
T ss_dssp             ETTTTEEEEEETTT---TEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             eCCCCEEEEEECCC---CcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence            89999999999998   88888877654 57999999999877 677789999999998754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.49  E-value=4.1e-12  Score=102.45  Aligned_cols=141  Identities=11%  Similarity=0.127  Sum_probs=104.0

Q ss_pred             CCcEEEEEECCCCceeee-e----------------eeeecCCCCeeEEEEeecccccCCCCeEE-EEEeCCCeEEEEEe
Q psy3599          59 TGVIVSILCDDLGRLSKG-K----------------RLVLSQDCPITCLSWRSWISREARDPTLL-VNIAANAVCILKVL  120 (223)
Q Consensus        59 ~~~i~~~~~~~~~~~~~~-~----------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l-~~~~~~~~~~v~i~  120 (223)
                      .+.+..+.|+|+++.+.. .                .........+.+++|+       +++..| ++++.++  .+++|
T Consensus        73 ~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s-------~dg~~l~~~~~~~~--~v~~~  143 (391)
T 1l0q_A           73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS-------PDGKKLYVTNNGDK--TVSVI  143 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEEC-------TTSSEEEEEETTTT--EEEEE
T ss_pred             CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEEC-------CCCCEEEEEeCCCC--EEEEE
Confidence            347778888887764421 1                1111225578899999       888876 6777788  89999


Q ss_pred             cCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEE-EEecCCCcEEEEEcccCcccccceeecccccCEEEEEEec
Q psy3599         121 DKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACV-VTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNY  199 (223)
Q Consensus       121 d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l-~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~  199 (223)
                      |..+++.+... . .+ ..+  ....|+|     ++..+ ++++.++.|++||+++   ++++..+. +...+.+++|+|
T Consensus       144 d~~~~~~~~~~-~-~~-~~~--~~~~~~~-----dg~~l~~~~~~~~~v~~~d~~~---~~~~~~~~-~~~~~~~~~~~~  209 (391)
T 1l0q_A          144 NTVTKAVINTV-S-VG-RSP--KGIAVTP-----DGTKVYVANFDSMSISVIDTVT---NSVIDTVK-VEAAPSGIAVNP  209 (391)
T ss_dssp             ETTTTEEEEEE-E-CC-SSE--EEEEECT-----TSSEEEEEETTTTEEEEEETTT---TEEEEEEE-CSSEEEEEEECT
T ss_pred             ECCCCcEEEEE-e-cC-CCc--ceEEECC-----CCCEEEEEeCCCCEEEEEECCC---CeEEEEEe-cCCCccceEECC
Confidence            99988766542 2 33 332  3337999     67666 7888999999999998   77777666 456789999999


Q ss_pred             CCCEEEEEe---CCCcEEEeeCCCCC
Q psy3599         200 DESLLATSD---YQGLIILWSREKHE  222 (223)
Q Consensus       200 ~~~~l~s~s---~d~~i~iwd~~~~~  222 (223)
                      ++..+++++   .++.|++||+++++
T Consensus       210 ~g~~l~~~~~~~~~~~v~~~d~~~~~  235 (391)
T 1l0q_A          210 EGTKAYVTNVDKYFNTVSMIDTGTNK  235 (391)
T ss_dssp             TSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             CCCEEEEEecCcCCCcEEEEECCCCe
Confidence            999888887   68999999998754

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.46  E-value=6.5e-13  Score=108.55  Aligned_cols=119  Identities=9%  Similarity=0.035  Sum_probs=96.4

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeee---ccccCcceeEEE-eeecCcccCCCcEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFN---VNHKSSKYQVRS-TFCPIMSFREGACV  159 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~---~~h~~~~~~i~~-~~s~~~~~~~~~~l  159 (223)
                      ...+.+++|+       +++.++++++.++  .+++||..++..+.....   .+|...   +.+ .|+|     ++.++
T Consensus       122 ~~~~~~~~~s-------~~~~~~~~~~~~~--~i~~~d~~~g~~~~~~~~~~~~~~~~~---v~~~~~~~-----~~~~~  184 (433)
T 3bws_A          122 GFQPKSVRFI-------DNTRLAIPLLEDE--GMDVLDINSGQTVRLSPPEKYKKKLGF---VETISIPE-----HNELW  184 (433)
T ss_dssp             SSCBCCCEES-------SSSEEEEEBTTSS--SEEEEETTTCCEEEECCCHHHHTTCCE---EEEEEEGG-----GTEEE
T ss_pred             CCCceEEEEe-------CCCeEEEEeCCCC--eEEEEECCCCeEeeecCcccccccCCc---eeEEEEcC-----CCEEE
Confidence            3456689999       7888888888887  789999998866542110   256555   555 7888     79999


Q ss_pred             EEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEE-EEeCCCcEEEeeCCCCC
Q psy3599         160 VTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLA-TSDYQGLIILWSREKHE  222 (223)
Q Consensus       160 ~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~s~d~~i~iwd~~~~~  222 (223)
                      ++++.|+.|++||+++   ++.+..+..|...+.+++|+|++..++ +++.|+.|++||+++++
T Consensus       185 ~s~~~d~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~  245 (433)
T 3bws_A          185 VSQMQANAVHVFDLKT---LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL  245 (433)
T ss_dssp             EEEGGGTEEEEEETTT---CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred             EEECCCCEEEEEECCC---ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence            9999999999999998   888888888999999999999998775 55579999999998754

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.45  E-value=5.6e-12  Score=102.99  Aligned_cols=142  Identities=8%  Similarity=0.114  Sum_probs=104.9

Q ss_pred             ccCCcEEEEEECCCCceeeee------------------eeeecCCCCeeEEEEeecccccCCCCeEEE-EEeCCCeEEE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK------------------RLVLSQDCPITCLSWRSWISREARDPTLLV-NIAANAVCIL  117 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~-~~~~~~~~~v  117 (223)
                      +|.+.|..+.++++++++.+.                  .+..+ ...+.+++|+       +++.+++ +++.++  .+
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~l~~~~~~~~--~i  236 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLT-GKWSKILLYD-------PIRDLVYCSNWISE--DI  236 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECS-SSSEEEEEEE-------TTTTEEEEEETTTT--EE
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCC-CCCeeEEEEc-------CCCCEEEEEecCCC--cE
Confidence            566778888887777665432                  22233 6789999999       8887775 555778  89


Q ss_pred             EEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec--------CCCcEEEEEcccCcccccceeecccc
Q psy3599         118 KVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS--------EDSCVYFLDIQSKEHKNAVNKLQGHA  189 (223)
Q Consensus       118 ~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs--------~dg~v~iwd~~~~~~~~~~~~~~~h~  189 (223)
                      ++||..++..+...   .+...+  ....|+|     ++..+++++        .|+.|++||+.+   ++.+..+ .|.
T Consensus       237 ~~~d~~~~~~~~~~---~~~~~~--~~~~~~~-----~g~~l~~~~~~~~~~~~~dg~i~~~d~~~---~~~~~~~-~~~  302 (433)
T 3bws_A          237 SVIDRKTKLEIRKT---DKIGLP--RGLLLSK-----DGKELYIAQFSASNQESGGGRLGIYSMDK---EKLIDTI-GPP  302 (433)
T ss_dssp             EEEETTTTEEEEEC---CCCSEE--EEEEECT-----TSSEEEEEEEESCTTCSCCEEEEEEETTT---TEEEEEE-EEE
T ss_pred             EEEECCCCcEEEEe---cCCCCc--eEEEEcC-----CCCEEEEEECCCCccccCCCeEEEEECCC---CcEEeec-cCC
Confidence            99999888665532   222332  3338999     788888887        588999999998   7766655 456


Q ss_pred             cCEEEEEEecCCC-EEEEEeCCCcEEEeeCCCCC
Q psy3599         190 CPVLGVSFNYDES-LLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       190 ~~v~~v~~~~~~~-~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ..+.+++|+|++. ++++++.|+.|++||+++++
T Consensus       303 ~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~  336 (433)
T 3bws_A          303 GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK  336 (433)
T ss_dssp             ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence            6889999999987 55677899999999998653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.43  E-value=1.5e-11  Score=100.78  Aligned_cols=143  Identities=13%  Similarity=0.082  Sum_probs=103.8

Q ss_pred             ccCCcEEEEEECCCCceeeee--------------------eeeecCCCCeeEEEEeecccccCCCCeEEE-EEeCCCeE
Q psy3599          57 RSTGVIVSILCDDLGRLSKGK--------------------RLVLSQDCPITCLSWRSWISREARDPTLLV-NIAANAVC  115 (223)
Q Consensus        57 ~~~~~i~~~~~~~~~~~~~~~--------------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~-~~~~~~~~  115 (223)
                      ++.+.+..+.|+|+|+.+...                    .+..+ ...+.+++|+       |+|..|+ +++.++-.
T Consensus       176 ~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~-~~~~~~~~~s-------pdg~~la~~~~~~g~~  247 (415)
T 2hqs_A          176 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-PRHNGAPAFS-------PDGSKLAFALSKTGSL  247 (415)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-SSCEEEEEEC-------TTSSEEEEEECTTSSC
T ss_pred             CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC-CCcccCEEEc-------CCCCEEEEEEecCCCc
Confidence            567789999999988765332                    12223 5678899999       9999877 66554422


Q ss_pred             EEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecC-CC--cEEEEEcccCcccccceeecccccC
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSE-DS--CVYFLDIQSKEHKNAVNKLQGHACP  191 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~-dg--~v~iwd~~~~~~~~~~~~~~~h~~~  191 (223)
                      .+.+||+.++...  .+ ..|...   +.. .|+|     ++..|+.++. ++  .|++||+.+   ++ ...+..|...
T Consensus       248 ~i~~~d~~~~~~~--~l-~~~~~~---~~~~~~sp-----dg~~l~~~s~~~g~~~i~~~d~~~---~~-~~~l~~~~~~  312 (415)
T 2hqs_A          248 NLYVMDLASGQIR--QV-TDGRSN---NTEPTWFP-----DSQNLAFTSDQAGRPQVYKVNING---GA-PQRITWEGSQ  312 (415)
T ss_dssp             EEEEEETTTCCEE--EC-CCCSSC---EEEEEECT-----TSSEEEEEECTTSSCEEEEEETTS---SC-CEECCCSSSE
T ss_pred             eEEEEECCCCCEE--eC-cCCCCc---ccceEECC-----CCCEEEEEECCCCCcEEEEEECCC---CC-EEEEecCCCc
Confidence            6888999877543  22 366655   555 8999     7888887776 45  677778887   55 3445556678


Q ss_pred             EEEEEEecCCCEEEEEeCC---CcEEEeeCCCCC
Q psy3599         192 VLGVSFNYDESLLATSDYQ---GLIILWSREKHE  222 (223)
Q Consensus       192 v~~v~~~~~~~~l~s~s~d---~~i~iwd~~~~~  222 (223)
                      +.+++|+|+|.+|++++.+   ..|++||+.+++
T Consensus       313 ~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~  346 (415)
T 2hqs_A          313 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG  346 (415)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred             ccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence            8999999999999888764   589999998764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.40  E-value=4e-11  Score=98.18  Aligned_cols=122  Identities=14%  Similarity=0.178  Sum_probs=92.9

Q ss_pred             eeeecCCCCeeEEEEeecccccCCCCeEEEEEeCC-CeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCC
Q psy3599          78 RLVLSQDCPITCLSWRSWISREARDPTLLVNIAAN-AVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFRE  155 (223)
Q Consensus        78 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~  155 (223)
                      .+..| ...+.+++|+       |+|..|++++.+ +-..+.+||+.++....  + ..|...   +.+ .|+|     +
T Consensus       173 ~l~~~-~~~v~~~~~S-------pdg~~la~~s~~~~~~~i~~~d~~tg~~~~--l-~~~~~~---~~~~~~sp-----d  233 (415)
T 2hqs_A          173 VVHRS-PQPLMSPAWS-------PDGSKLAYVTFESGRSALVIQTLANGAVRQ--V-ASFPRH---NGAPAFSP-----D  233 (415)
T ss_dssp             EEEEE-SSCEEEEEEC-------TTSSEEEEEECTTSSCEEEEEETTTCCEEE--E-ECCSSC---EEEEEECT-----T
T ss_pred             EEeCC-CCcceeeEEc-------CCCCEEEEEEecCCCcEEEEEECCCCcEEE--e-ecCCCc---ccCEEEcC-----C
Confidence            44556 7899999999       999999988754 12278999998886543  2 366655   555 8999     7


Q ss_pred             CcEEE-EecCCCc--EEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeC-CC--cEEEeeCCCCC
Q psy3599         156 GACVV-TGSEDSC--VYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDY-QG--LIILWSREKHE  222 (223)
Q Consensus       156 ~~~l~-sgs~dg~--v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-d~--~i~iwd~~~~~  222 (223)
                      +..|+ +++.++.  |++||+.+   +++ ..+..|...+.+++|+|+|..|++++. ++  .|.+||+.+++
T Consensus       234 g~~la~~~~~~g~~~i~~~d~~~---~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~  302 (415)
T 2hqs_A          234 GSKLAFALSKTGSLNLYVMDLAS---GQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA  302 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTT---CCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             CCEEEEEEecCCCceEEEEECCC---CCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence            88666 7777665  99999988   654 566778888999999999999988876 44  67778987654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.27  E-value=1.4e-10  Score=89.14  Aligned_cols=117  Identities=9%  Similarity=0.160  Sum_probs=84.9

Q ss_pred             CCCeeEEEEeecccccCCCCeEEE-EEeCCCeEEEEEecC--CCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLV-NIAANAVCILKVLDK--EGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACV  159 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~-~~~~~~~~~v~i~d~--~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l  159 (223)
                      ...+..++|+       +++.+|+ +++.++  .+++|+.  .++...  .+ ..+...   +.. .|+|     ++..+
T Consensus       128 ~~~~~~~~~s-------pdg~~l~~~~~~~~--~~~l~~~~~~~~~~~--~~-~~~~~~---~~~~~~s~-----dg~~l  187 (297)
T 2ojh_A          128 NLPSYWHGWS-------PDGKSFTYCGIRDQ--VFDIYSMDIDSGVET--RL-THGEGR---NDGPDYSP-----DGRWI  187 (297)
T ss_dssp             SSSEEEEEEC-------TTSSEEEEEEEETT--EEEEEEEETTTCCEE--EC-CCSSSC---EEEEEECT-----TSSEE
T ss_pred             CCCccceEEC-------CCCCEEEEEECCCC--ceEEEEEECCCCcce--Ec-ccCCCc---cccceECC-----CCCEE
Confidence            3458889999       8998777 666667  5677774  444332  22 255544   454 8999     68876


Q ss_pred             EEec-CCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCC-----------CcEEEeeCCCCC
Q psy3599         160 VTGS-EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQ-----------GLIILWSREKHE  222 (223)
Q Consensus       160 ~sgs-~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d-----------~~i~iwd~~~~~  222 (223)
                      +.++ .++.+.+|++...  ...+..+..|...+.++.|+|++..|++++.+           +.|.+||+.+++
T Consensus       188 ~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  260 (297)
T 2ojh_A          188 YFNSSRTGQMQIWRVRVD--GSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN  260 (297)
T ss_dssp             EEEECTTSSCEEEEEETT--SSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred             EEEecCCCCccEEEECCC--CCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence            6555 5899999998731  45567777788889999999999999888765           569999998764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.20  E-value=9e-10  Score=86.65  Aligned_cols=139  Identities=14%  Similarity=0.023  Sum_probs=95.9

Q ss_pred             cCCcEEEEEECCCCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCC-CeEEEEEecCC--CceEE-eeeee
Q psy3599          58 STGVIVSILCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAAN-AVCILKVLDKE--GAVQL-KRKFN  133 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~v~i~d~~--~~~~~-~~~~~  133 (223)
                      .++.|..+..+.++.+..... ..+ ...+.+++|+       +++.+|++++.+ +  .+.+|++.  ++... ...+.
T Consensus        13 ~~~~v~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~s-------pdg~~l~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~   81 (343)
T 1ri6_A           13 ESQQIHVWNLNHEGALTLTQV-VDV-PGQVQPMVVS-------PDKRYLYVGVRPEF--RVLAYRIAPDDGALTFAAESA   81 (343)
T ss_dssp             GGTEEEEEEECTTSCEEEEEE-EEC-SSCCCCEEEC-------TTSSEEEEEETTTT--EEEEEEECTTTCCEEEEEEEE
T ss_pred             CCCeEEEEEECCCCcEEEeee-Eec-CCCCceEEEC-------CCCCEEEEeecCCC--eEEEEEecCCCCceeeccccc
Confidence            467888877776565433222 223 6788999999       999988877754 6  78888876  44322 12222


Q ss_pred             ccccCcceeEEEeeecCcccCCCcEEEEec-CCCcEEEEEc---ccCcccccceeecccccCEEEEEEecCCCEEEEEe-
Q psy3599         134 VNHKSSKYQVRSTFCPIMSFREGACVVTGS-EDSCVYFLDI---QSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSD-  208 (223)
Q Consensus       134 ~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs-~dg~v~iwd~---~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s-  208 (223)
                       .+. .+  ...+|+|     ++..+++++ .++.|++||+   ..   .+.+..+..+ ..+.+++|+|++..+++++ 
T Consensus        82 -~~~-~~--~~~~~s~-----dg~~l~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~  148 (343)
T 1ri6_A           82 -LPG-SL--THISTDH-----QGQFVFVGSYNAGNVSVTRLEDGLP---VGVVDVVEGL-DGCHSANISPDNRTLWVPAL  148 (343)
T ss_dssp             -CSS-CC--SEEEECT-----TSSEEEEEETTTTEEEEEEEETTEE---EEEEEEECCC-TTBCCCEECTTSSEEEEEEG
T ss_pred             -cCC-CC--cEEEEcC-----CCCEEEEEecCCCeEEEEECCCCcc---ccccccccCC-CCceEEEECCCCCEEEEecC
Confidence             222 32  3447999     687665554 5889999999   44   4555666544 3588899999999887777 


Q ss_pred             CCCcEEEeeCCC
Q psy3599         209 YQGLIILWSREK  220 (223)
Q Consensus       209 ~d~~i~iwd~~~  220 (223)
                      .++.|++||+.+
T Consensus       149 ~~~~v~~~d~~~  160 (343)
T 1ri6_A          149 KQDRICLFTVSD  160 (343)
T ss_dssp             GGTEEEEEEECT
T ss_pred             CCCEEEEEEecC
Confidence            899999999976

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.12  E-value=1.1e-09  Score=95.56  Aligned_cols=120  Identities=8%  Similarity=0.016  Sum_probs=90.2

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeC-CC---eEEEEEecCCCceEEeeeeeccccCcc-------------------
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAA-NA---VCILKVLDKEGAVQLKRKFNVNHKSSK-------------------  140 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~-~~---~~~v~i~d~~~~~~~~~~~~~~h~~~~-------------------  140 (223)
                      ...+.+++|+       |||++|++++. ++   ...+.+||..++...... . .+....                   
T Consensus        36 ~~~~~~~~~S-------pdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~  106 (741)
T 2ecf_A           36 GPTLMKPKVA-------PDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-D-SKVVLPGTETLSDEEKARRERQRIA  106 (741)
T ss_dssp             CCCCEEEEEC-------TTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-C-GGGTC--------------------
T ss_pred             CCCCCCceEe-------cCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-c-hhhcccccccccchhhhhhhhhhhc
Confidence            5579999999       99999998875 44   336889999887654322 1 221110                   


Q ss_pred             --eeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccc--cceeecccccCEEEEEEecCCCEEEEEeCCCcEEE
Q psy3599         141 --YQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKN--AVNKLQGHACPVLGVSFNYDESLLATSDYQGLIIL  215 (223)
Q Consensus       141 --~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~i  215 (223)
                        ..+.. .|+|     +++.|++++. +.|++||+.+   +.  .+..+..|...+.+++|+|||+.|++++ ++.|++
T Consensus       107 ~~~~v~~~~~Sp-----Dg~~l~~~~~-~~i~~~d~~~---~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~  176 (741)
T 2ecf_A          107 AMTGIVDYQWSP-----DAQRLLFPLG-GELYLYDLKQ---EGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWV  176 (741)
T ss_dssp             CCEESCCCEECT-----TSSEEEEEET-TEEEEEESSS---CSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEE
T ss_pred             cccCcceeEECC-----CCCEEEEEeC-CcEEEEECCC---CCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEE
Confidence              01334 7999     8999998886 8999999998   62  3556667888899999999999999987 568999


Q ss_pred             eeCCCCC
Q psy3599         216 WSREKHE  222 (223)
Q Consensus       216 wd~~~~~  222 (223)
                      ||+.+++
T Consensus       177 ~d~~~g~  183 (741)
T 2ecf_A          177 IDLASGR  183 (741)
T ss_dssp             EETTTTE
T ss_pred             EecCCCC
Confidence            9997653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.12  E-value=4e-10  Score=97.98  Aligned_cols=105  Identities=10%  Similarity=0.023  Sum_probs=75.3

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeCC---------CeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCC
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAAN---------AVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFRE  155 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~~---------~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~  155 (223)
                      .|.+++|+       |||++|++++.+         .  .+.+||..++.........+|...   +.. .|+|     +
T Consensus        62 ~v~~~~~S-------pDg~~l~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~l~~~~~~~~~---~~~~~~SP-----d  124 (723)
T 1xfd_A           62 RAIRYEIS-------PDREYALFSYNVEPIYQHSYTG--YYVLSKIPHGDPQSLDPPEVSNAK---LQYAGWGP-----K  124 (723)
T ss_dssp             TCSEEEEC-------TTSSEEEEEESCCCCSSSCCCS--EEEEEESSSCCCEECCCTTCCSCC---CSBCCBCS-----S
T ss_pred             ccceEEEC-------CCCCEEEEEecCccceeeccee--eEEEEECCCCceEeccCCcccccc---ccccEECC-----C
Confidence            48999999       999999988753         4  678999988754211100133333   333 7999     7


Q ss_pred             CcEEEEecCCCcEEEEEcccCcccccceeecccccCE------------------EEEEEecCCCEEEEEeCCC
Q psy3599         156 GACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPV------------------LGVSFNYDESLLATSDYQG  211 (223)
Q Consensus       156 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v------------------~~v~~~~~~~~l~s~s~d~  211 (223)
                      ++.|+.++. +.|++||+.+   ++.......+...+                  .++.|+|||+.|++++.|+
T Consensus       125 G~~la~~~~-~~i~~~~~~~---g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~  194 (723)
T 1xfd_A          125 GQQLIFIFE-NNIYYCAHVG---KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND  194 (723)
T ss_dssp             TTCEEEEET-TEEEEESSSS---SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC
T ss_pred             CCEEEEEEC-CeEEEEECCC---CceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECC
Confidence            999988876 7899999988   66655544433333                  7899999999999987553

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.12  E-value=1.5e-08  Score=80.31  Aligned_cols=123  Identities=7%  Similarity=0.037  Sum_probs=79.4

Q ss_pred             CCeeEEEEeecccccCCCCeEEEE-EeCCCeEEEEEecCCC--ceEE-eeeeeccccC----cceeEEEeeecCcccCCC
Q psy3599          85 CPITCLSWRSWISREARDPTLLVN-IAANAVCILKVLDKEG--AVQL-KRKFNVNHKS----SKYQVRSTFCPIMSFREG  156 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~~-~~~~~~~~v~i~d~~~--~~~~-~~~~~~~h~~----~~~~i~~~~s~~~~~~~~  156 (223)
                      ..+..++|+       |+|++|++ +..++  .+.+|+...  +... ...+. ....    .......+|+|     ++
T Consensus       187 ~~p~~~~~s-------pdg~~l~v~~~~~~--~v~v~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~i~~sp-----dG  251 (347)
T 3hfq_A          187 FGPRHLVFS-------PDGQYAFLAGELSS--QIASLKYDTQTGAFTQLGIVK-TIPADYTAHNGAAAIRLSH-----DG  251 (347)
T ss_dssp             CCEEEEEEC-------TTSSEEEEEETTTT--EEEEEEEETTTTEEEEEEEEE-SSCTTCCSCCEEEEEEECT-----TS
T ss_pred             CCCceEEEC-------CCCCEEEEEeCCCC--EEEEEEecCCCCceEEeeeee-ecCCCCCCCCcceeEEECC-----CC
Confidence            356778999       89986555 45666  677887663  4321 11111 1111    01113337999     78


Q ss_pred             cEE-EEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeC-CCcEEEe--eCCCCC
Q psy3599         157 ACV-VTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDY-QGLIILW--SREKHE  222 (223)
Q Consensus       157 ~~l-~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-d~~i~iw--d~~~~~  222 (223)
                      ++| ++...++.|.+|++...+..+.+..+..+...+..++|+|++.+|++++. ++.|.+|  |..+++
T Consensus       252 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~  321 (347)
T 3hfq_A          252 HFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGK  321 (347)
T ss_dssp             CEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred             CEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence            866 56667899999999741113455566666667889999999998888775 4899999  555554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.11  E-value=9.6e-09  Score=80.71  Aligned_cols=120  Identities=8%  Similarity=0.088  Sum_probs=77.7

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEE-EeCCCeEEEEEecCCC--ceE--Eee--eeeccccCcceeEEEeeecCcccCCC
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVN-IAANAVCILKVLDKEG--AVQ--LKR--KFNVNHKSSKYQVRSTFCPIMSFREG  156 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~-~~~~~~~~v~i~d~~~--~~~--~~~--~~~~~h~~~~~~i~~~~s~~~~~~~~  156 (223)
                      ...+..+.|+       +++.+|+. +..++  .+.+|+...  +..  ...  .+..++..........|+|     ++
T Consensus       177 ~~~~~~~~~~-------pdg~~l~~~~~~~~--~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-----dg  242 (343)
T 1ri6_A          177 GAGPRHMVFH-------PNEQYAYCVNELNS--SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-----DG  242 (343)
T ss_dssp             TCCEEEEEEC-------TTSSEEEEEETTTT--EEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-----TS
T ss_pred             CCCcceEEEC-------CCCCEEEEEeCCCC--EEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-----CC
Confidence            4577889999       88886654 44677  788999853  321  111  1111222121112347999     67


Q ss_pred             cEEE-EecCCCcEEEEEcccC-cccccceeecccccCEEEEEEecCCCEEEEEe-CCCcEEEeeC
Q psy3599         157 ACVV-TGSEDSCVYFLDIQSK-EHKNAVNKLQGHACPVLGVSFNYDESLLATSD-YQGLIILWSR  218 (223)
Q Consensus       157 ~~l~-sgs~dg~v~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s-~d~~i~iwd~  218 (223)
                      .+++ ++..++.|.+||+... ...+.+..+..+.. +.+++|+|+++.|++++ .++.+.+|++
T Consensus       243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~  306 (343)
T 1ri6_A          243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEI  306 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             CEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEE
Confidence            6665 6668999999999820 01344555554444 88999999999888777 6899999954

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.10  E-value=1.4e-09  Score=94.78  Aligned_cols=100  Identities=15%  Similarity=0.188  Sum_probs=75.1

Q ss_pred             eeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCc---eEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEe
Q psy3599          87 ITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGA---VQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTG  162 (223)
Q Consensus        87 i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~---~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sg  162 (223)
                      +.+++|+       |||++|++++. +  .+.+||..++   ... . + ..|...   +.. .|+|     +++.|+.+
T Consensus       111 v~~~~~S-------pDg~~l~~~~~-~--~i~~~d~~~~~~~~~~-~-l-~~~~~~---~~~~~~SP-----DG~~la~~  169 (741)
T 2ecf_A          111 IVDYQWS-------PDAQRLLFPLG-G--ELYLYDLKQEGKAAVR-Q-L-THGEGF---ATDAKLSP-----KGGFVSFI  169 (741)
T ss_dssp             SCCCEEC-------TTSSEEEEEET-T--EEEEEESSSCSTTSCC-B-C-CCSSSC---EEEEEECT-----TSSEEEEE
T ss_pred             cceeEEC-------CCCCEEEEEeC-C--cEEEEECCCCCcceEE-E-c-ccCCcc---cccccCCC-----CCCEEEEE
Confidence            7899999       99999998887 5  6889999877   332 2 2 355555   454 8999     89999988


Q ss_pred             cCCCcEEEEEcccCcccccceeecccccC----------------EEEEEEecCCCEEEEEeCCC
Q psy3599         163 SEDSCVYFLDIQSKEHKNAVNKLQGHACP----------------VLGVSFNYDESLLATSDYQG  211 (223)
Q Consensus       163 s~dg~v~iwd~~~~~~~~~~~~~~~h~~~----------------v~~v~~~~~~~~l~s~s~d~  211 (223)
                      +. +.|++||+.+   ++.......+...                +.++.|+|||..|++++.|+
T Consensus       170 ~~-~~i~~~d~~~---g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~  230 (741)
T 2ecf_A          170 RG-RNLWVIDLAS---GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE  230 (741)
T ss_dssp             ET-TEEEEEETTT---TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred             eC-CcEEEEecCC---CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence            74 5899999988   6654444433332                47799999999999988765

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.09  E-value=6.5e-10  Score=100.83  Aligned_cols=138  Identities=9%  Similarity=-0.009  Sum_probs=100.4

Q ss_pred             CcEEEEEEC-CCCceeeee----------------eeeecCCC-CeeEEEEeecccccCCCCeEEEEEeCCCeEEEE-Ee
Q psy3599          60 GVIVSILCD-DLGRLSKGK----------------RLVLSQDC-PITCLSWRSWISREARDPTLLVNIAANAVCILK-VL  120 (223)
Q Consensus        60 ~~i~~~~~~-~~~~~~~~~----------------~~~~~~~~-~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~-i~  120 (223)
                      +.+..+.|+ |+|+.+...                .+..+ .. .+..+.|+        ++..|+.++++.  .+. +|
T Consensus       296 ~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~s--------dg~~l~~~s~~~--~l~~~~  364 (1045)
T 1k32_A          296 PSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEP-LRIRYVRRGGD--------TKVAFIHGTREG--DFLGIY  364 (1045)
T ss_dssp             GGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCC-SCEEEEEECSS--------SEEEEEEEETTE--EEEEEE
T ss_pred             cccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCC-CcceEEeeeEc--------CCCeEEEEECCC--ceEEEE
Confidence            356778888 887754322                11112 22 45555553        677888877755  555 88


Q ss_pred             cCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEec
Q psy3599         121 DKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNY  199 (223)
Q Consensus       121 d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~  199 (223)
                      +..++....  + .+|...   +.. .|+|     ++..|++++.++.|++||+.+   ++....+.+|...+.+++|+|
T Consensus       365 d~~~~~~~~--l-~~~~~~---~~~~~~Sp-----DG~~la~~~~~~~v~~~d~~t---g~~~~~~~~~~~~v~~~~~Sp  430 (1045)
T 1k32_A          365 DYRTGKAEK--F-EENLGN---VFAMGVDR-----NGKFAVVANDRFEIMTVDLET---GKPTVIERSREAMITDFTISD  430 (1045)
T ss_dssp             ETTTCCEEE--C-CCCCCS---EEEEEECT-----TSSEEEEEETTSEEEEEETTT---CCEEEEEECSSSCCCCEEECT
T ss_pred             ECCCCCceE--e-cCCccc---eeeeEECC-----CCCEEEEECCCCeEEEEECCC---CceEEeccCCCCCccceEECC
Confidence            988765332  2 255555   444 8999     899999999999999999998   777777768888899999999


Q ss_pred             CCCEEEEEeCCC----------cEEEeeCCCCC
Q psy3599         200 DESLLATSDYQG----------LIILWSREKHE  222 (223)
Q Consensus       200 ~~~~l~s~s~d~----------~i~iwd~~~~~  222 (223)
                      +|..|++++.++          .|++||+.+++
T Consensus       431 DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          431 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             CCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            999998887654          89999997653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.08  E-value=1.3e-09  Score=92.24  Aligned_cols=106  Identities=10%  Similarity=0.132  Sum_probs=86.7

Q ss_pred             CCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEc--ccCcc
Q psy3599         101 RDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDI--QSKEH  178 (223)
Q Consensus       101 ~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~--~~~~~  178 (223)
                      +++.++++++.++  .+.+||..+++.+... ..++.  +  -...|+|     ++.++++++.|+.|++||+  .+   
T Consensus       147 p~~~~~vs~~~d~--~V~v~D~~t~~~~~~i-~~g~~--~--~~v~~sp-----dg~~l~v~~~d~~V~v~D~~~~t---  211 (543)
T 1nir_A          147 LPNLFSVTLRDAG--QIALVDGDSKKIVKVI-DTGYA--V--HISRMSA-----SGRYLLVIGRDARIDMIDLWAKE---  211 (543)
T ss_dssp             GGGEEEEEEGGGT--EEEEEETTTCCEEEEE-ECSTT--E--EEEEECT-----TSCEEEEEETTSEEEEEETTSSS---
T ss_pred             CCCEEEEEEcCCC--eEEEEECCCceEEEEE-ecCcc--c--ceEEECC-----CCCEEEEECCCCeEEEEECcCCC---
Confidence            7889999999888  8999999998776543 22443  2  2237999     8999999999999999999  77   


Q ss_pred             cccceeecccccCEEEEEEec----CCCEEEEEe-CCCcEEEeeCCCCC
Q psy3599         179 KNAVNKLQGHACPVLGVSFNY----DESLLATSD-YQGLIILWSREKHE  222 (223)
Q Consensus       179 ~~~~~~~~~h~~~v~~v~~~~----~~~~l~s~s-~d~~i~iwd~~~~~  222 (223)
                      ++++..+.. ...+..++|+|    +|.++++++ .+++|.+||..+++
T Consensus       212 ~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~  259 (543)
T 1nir_A          212 PTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE  259 (543)
T ss_dssp             CEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred             CcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence            778888874 44579999999    999999888 48999999988765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.08  E-value=6e-09  Score=79.83  Aligned_cols=133  Identities=12%  Similarity=0.075  Sum_probs=88.3

Q ss_pred             CCcEEEEEECC-CCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCC-ceEEeeeeeccc
Q psy3599          59 TGVIVSILCDD-LGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEG-AVQLKRKFNVNH  136 (223)
Q Consensus        59 ~~~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~-~~~~~~~~~~~h  136 (223)
                      ++.|..  |+. +++..   .+..+ ...|.+++|+       |++.+|+++++ +  .+.+||..+ +.... .. .++
T Consensus        21 ~~~i~~--~d~~~~~~~---~~~~~-~~~v~~~~~s-------pdg~~l~~~~~-~--~i~~~d~~~~~~~~~-~~-~~~   82 (297)
T 2ojh_A           21 RSSIEI--FNIRTRKMR---VVWQT-PELFEAPNWS-------PDGKYLLLNSE-G--LLYRLSLAGDPSPEK-VD-TGF   82 (297)
T ss_dssp             CEEEEE--EETTTTEEE---EEEEE-SSCCEEEEEC-------TTSSEEEEEET-T--EEEEEESSSCCSCEE-CC-CTT
T ss_pred             ceeEEE--EeCCCCcee---eeccC-CcceEeeEEC-------CCCCEEEEEcC-C--eEEEEeCCCCCCceE-ec-ccc
Confidence            455553  444 34433   23345 7889999999       99999999875 4  588899887 64433 22 244


Q ss_pred             cCcceeEEE-eeecCcccCCCcEEEEec--CCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEE-EEeCCCc
Q psy3599         137 KSSKYQVRS-TFCPIMSFREGACVVTGS--EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLA-TSDYQGL  212 (223)
Q Consensus       137 ~~~~~~i~~-~~s~~~~~~~~~~l~sgs--~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~s~d~~  212 (223)
                      ....  +.+ .|+|     ++..+++++  .++...+|.+.... ++ ...+..+. .+..++|+|++..|+ +++.++.
T Consensus        83 ~~~~--~~~~~~sp-----dg~~l~~~~~~~~~~~~l~~~~~~~-~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~  152 (297)
T 2ojh_A           83 ATIC--NNDHGISP-----DGALYAISDKVEFGKSAIYLLPSTG-GT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQV  152 (297)
T ss_dssp             CCCB--CSCCEECT-----TSSEEEEEECTTTSSCEEEEEETTC-CC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTE
T ss_pred             cccc--ccceEECC-----CCCEEEEEEeCCCCcceEEEEECCC-Cc-eEEeecCC-CccceEECCCCCEEEEEECCCCc
Confidence            3222  444 7999     799999988  34556666554310 33 34444333 489999999999877 7778999


Q ss_pred             EEEeeCC
Q psy3599         213 IILWSRE  219 (223)
Q Consensus       213 i~iwd~~  219 (223)
                      ++||++.
T Consensus       153 ~~l~~~~  159 (297)
T 2ojh_A          153 FDIYSMD  159 (297)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEE
Confidence            9999853

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.07  E-value=8.4e-09  Score=81.54  Aligned_cols=121  Identities=13%  Similarity=0.124  Sum_probs=87.9

Q ss_pred             CCCeeEEEEeecccccCCCCeEEE-EEeCCCeEEEEEecCCCceEEeeeeeccccCc-----ceeEE-EeeecCcccCCC
Q psy3599          84 DCPITCLSWRSWISREARDPTLLV-NIAANAVCILKVLDKEGAVQLKRKFNVNHKSS-----KYQVR-STFCPIMSFREG  156 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~-~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~-----~~~i~-~~~s~~~~~~~~  156 (223)
                      ...+..+.|+       +++.+++ +...++  .+.+||..+++.+... ..+....     ..... ..|+|     ++
T Consensus        88 ~~~~~~~~~s-------~dg~~l~v~~~~~~--~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~-----dg  152 (353)
T 3vgz_A           88 DLKPFGATIN-------NTTQTLWFGNTVNS--AVTAIDAKTGEVKGRL-VLDDRKRTEEVRPLQPRELVADD-----AT  152 (353)
T ss_dssp             SSCCCSEEEE-------TTTTEEEEEETTTT--EEEEEETTTCCEEEEE-ESCCCCCCSSCCCCEEEEEEEET-----TT
T ss_pred             CCCcceEEEC-------CCCCEEEEEecCCC--EEEEEeCCCCeeEEEE-ecCCCccccccCCCCCceEEECC-----CC
Confidence            3457789999       8887554 555667  7899999888765532 2121111     00123 37999     67


Q ss_pred             cEEEEec--CCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         157 ACVVTGS--EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       157 ~~l~sgs--~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +.++.++  .++.|.+||..+   ++.+..+..+...+.++.|+|++..+++++.++.+.+||+.+++
T Consensus       153 ~~l~~~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~  217 (353)
T 3vgz_A          153 NTVYISGIGKESVIWVVDGGN---IKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK  217 (353)
T ss_dssp             TEEEEEEESSSCEEEEEETTT---TEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE
T ss_pred             CEEEEEecCCCceEEEEcCCC---CceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe
Confidence            7666555  578899999998   88777777555667889999999999999999999999998754

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.06  E-value=2.3e-09  Score=93.09  Aligned_cols=118  Identities=10%  Similarity=0.128  Sum_probs=85.4

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCC-----ceEEeeeeeccccCcc-----------eeEEE-e
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEG-----AVQLKRKFNVNHKSSK-----------YQVRS-T  146 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~-----~~~~~~~~~~~h~~~~-----------~~i~~-~  146 (223)
                      ...+.+++|+       |||+.|+.+.+ +  .+.+|++.+     +......  ..+....           ..+.. .
T Consensus       120 ~~~~~~~~~S-------pdG~~la~~~~-~--~i~v~~~~~~~~~~g~~~~~~--~~~~~~~~~g~~~~~ee~~~~~~~~  187 (706)
T 2z3z_A          120 NEETASLDFS-------PVGDRVAYVRN-H--NLYIARGGKLGEGMSRAIAVT--IDGTETLVYGQAVHQREFGIEKGTF  187 (706)
T ss_dssp             TTCCTTCEEC-------TTSSEEEEEET-T--EEEEEECBCTTSCCCCCEESC--SCCBTTEEESSCCGGGCTTCCCSEE
T ss_pred             cccccCCcCC-------CCCCEEEEEEC-C--eEEEEecCcccccCCCcEEec--cCCCCCeEcccchhhhhcCCCceEE
Confidence            5678889999       99999998654 5  688999887     6543321  1222210           00133 6


Q ss_pred             eecCcccCCCcEEEEec---------------------------------CCCcEEEEEcccCcccccceee--cccccC
Q psy3599         147 FCPIMSFREGACVVTGS---------------------------------EDSCVYFLDIQSKEHKNAVNKL--QGHACP  191 (223)
Q Consensus       147 ~s~~~~~~~~~~l~sgs---------------------------------~dg~v~iwd~~~~~~~~~~~~~--~~h~~~  191 (223)
                      |+|     +++.|++++                                 .+..|++||+.+   ++.....  ..|...
T Consensus       188 ~Sp-----Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~---~~~~~~~~~~~~~~~  259 (706)
T 2z3z_A          188 WSP-----KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT---GKTVYLQTGEPKEKF  259 (706)
T ss_dssp             ECT-----TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT---TEEEECCCCSCTTCE
T ss_pred             ECC-----CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC---CceEeeccCCCCcee
Confidence            999     899999887                                 446799999988   6543332  246677


Q ss_pred             EEEEEEecCCCEEEEEeCCC-----cEEEeeCCCC
Q psy3599         192 VLGVSFNYDESLLATSDYQG-----LIILWSREKH  221 (223)
Q Consensus       192 v~~v~~~~~~~~l~s~s~d~-----~i~iwd~~~~  221 (223)
                      +.+++|+|+|..|++++.++     .|++||+.++
T Consensus       260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g  294 (706)
T 2z3z_A          260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG  294 (706)
T ss_dssp             EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred             EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence            99999999999999988775     8999999876

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.05  E-value=3e-08  Score=78.34  Aligned_cols=115  Identities=10%  Similarity=0.058  Sum_probs=86.2

Q ss_pred             eeEEEEeecccccCCCCeEEEEEe--CCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecC
Q psy3599          87 ITCLSWRSWISREARDPTLLVNIA--ANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE  164 (223)
Q Consensus        87 i~~l~~~~~~~~~~~~~~~l~~~~--~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~  164 (223)
                      +.++.|+       +++.++++++  .++  .+.+||..++..+... . .+...+  ....|+|     ++..++.++.
T Consensus       143 ~~~~~~s-------~dg~~l~~~~~~~~~--~i~~~d~~~~~~~~~~-~-~~~~~~--~~~~~s~-----dg~~l~~~~~  204 (353)
T 3vgz_A          143 PRELVAD-------DATNTVYISGIGKES--VIWVVDGGNIKLKTAI-Q-NTGKMS--TGLALDS-----EGKRLYTTNA  204 (353)
T ss_dssp             EEEEEEE-------TTTTEEEEEEESSSC--EEEEEETTTTEEEEEE-C-CCCTTC--CCCEEET-----TTTEEEEECT
T ss_pred             CceEEEC-------CCCCEEEEEecCCCc--eEEEEcCCCCceEEEe-c-CCCCcc--ceEEECC-----CCCEEEEEcC
Confidence            6889999       8888766555  466  7889999988766542 1 233332  2236899     7898999999


Q ss_pred             CCcEEEEEcccCcccccceeecc----cccCEEEEEEecCCCEEEEEeC-CCcEEEeeCCCCC
Q psy3599         165 DSCVYFLDIQSKEHKNAVNKLQG----HACPVLGVSFNYDESLLATSDY-QGLIILWSREKHE  222 (223)
Q Consensus       165 dg~v~iwd~~~~~~~~~~~~~~~----h~~~v~~v~~~~~~~~l~s~s~-d~~i~iwd~~~~~  222 (223)
                      ++.+.+||..+   ++.+..+..    +...+..++|+|++..++.++. ++.|.+||+.+++
T Consensus       205 ~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~  264 (353)
T 3vgz_A          205 DGELITIDTAD---NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN  264 (353)
T ss_dssp             TSEEEEEETTT---TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC
T ss_pred             CCeEEEEECCC---CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence            99999999998   777666543    4556889999999997666654 5999999998765

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.04  E-value=1.6e-08  Score=80.06  Aligned_cols=142  Identities=9%  Similarity=0.022  Sum_probs=92.5

Q ss_pred             CCcEEEEEECC-CCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeC--CCeEEEEEecCCCceEE-eeeeec
Q psy3599          59 TGVIVSILCDD-LGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAA--NAVCILKVLDKEGAVQL-KRKFNV  134 (223)
Q Consensus        59 ~~~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~v~i~d~~~~~~~-~~~~~~  134 (223)
                      .+.|..+.+++ +|++..... ..+ ...+..++|+       |++++++++..  ++  .+.+|++.++... ...+ .
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~-~~~-~~~p~~~a~s-------pdg~l~~~~~~~~~~--~v~~~~~~~g~~~~~~~~-~   82 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGL-LAA-TQNPTYLALS-------AKDCLYSVDKEDDEG--GIAAWQIDGQTAHKLNTV-V   82 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEE-EEE-CSCCCCEEEC-------TTCEEEEEEEETTEE--EEEEEEEETTEEEEEEEE-E
T ss_pred             CCCEEEEEEcCCCCeEEEeee-eec-cCCcceEEEc-------cCCeEEEEEecCCCc--eEEEEEecCCcEEEeeee-e
Confidence            45688888888 566544322 233 5667889999       89994444432  34  7888988766421 1111 1


Q ss_pred             cccCcceeEEEeeecCcccCCCcEEEEec-CCCcEEEEEcccCcccccceeecc---------cccCEEEEEEecCCCEE
Q psy3599         135 NHKSSKYQVRSTFCPIMSFREGACVVTGS-EDSCVYFLDIQSKEHKNAVNKLQG---------HACPVLGVSFNYDESLL  204 (223)
Q Consensus       135 ~h~~~~~~i~~~~s~~~~~~~~~~l~sgs-~dg~v~iwd~~~~~~~~~~~~~~~---------h~~~v~~v~~~~~~~~l  204 (223)
                      .+...+  ...+|+|     ++.+|++++ .++.+.+|++...+....+..+..         +...+.+++|+|++.++
T Consensus        83 ~~~~~p--~~~a~sp-----dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~  155 (347)
T 3hfq_A           83 APGTPP--AYVAVDE-----ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLA  155 (347)
T ss_dssp             EESCCC--SEEEEET-----TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEE
T ss_pred             cCCCCC--EEEEECC-----CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEE
Confidence            344443  3447999     788777776 789999999963111233333321         12248899999999977


Q ss_pred             EEEeCCCcEEEeeCC
Q psy3599         205 ATSDYQGLIILWSRE  219 (223)
Q Consensus       205 ~s~s~d~~i~iwd~~  219 (223)
                      ++...++.|.+||+.
T Consensus       156 v~~~~~~~v~~~~~~  170 (347)
T 3hfq_A          156 VIDLGSDKVYVYNVS  170 (347)
T ss_dssp             EEETTTTEEEEEEEC
T ss_pred             EEeCCCCEEEEEEEC
Confidence            777778899999987

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.04  E-value=1.1e-09  Score=93.21  Aligned_cols=109  Identities=10%  Similarity=-0.004  Sum_probs=86.3

Q ss_pred             eEEEEeecccccCCCCeEEEEEeCC--CeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecC
Q psy3599          88 TCLSWRSWISREARDPTLLVNIAAN--AVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSE  164 (223)
Q Consensus        88 ~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~  164 (223)
                      .++.|+       |||++|++++.+  ....+.+||+.++...  .+ .+|...   +.. .|+|     |++.|+++..
T Consensus       153 ~~~~~s-------pDG~~la~~~~~~~~~~~i~~~d~~~g~~~--~l-~~~~~~---~~~~~~Sp-----DG~~l~~~~~  214 (582)
T 3o4h_A          153 FGFVSD-------IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR--VF-DSGEGS---FSSASISP-----GMKVTAGLET  214 (582)
T ss_dssp             CEEEEE-------EETTEEEEEEEEETTEEEEEEEETTTCCCE--EE-CCSSCE---EEEEEECT-----TSCEEEEEEC
T ss_pred             ceEEEC-------CCCCEEEEEEEcCCCCeEEEEEcCCCCCce--Ee-ecCCCc---cccceECC-----CCCEEEEccC
Confidence            788999       999999977654  1126889998877543  22 366555   455 8999     8999998888


Q ss_pred             CC--cEEEEEcccCcccccceeecccccCEEEEE--------EecCCCEEEEEeCCCcEEEeeC
Q psy3599         165 DS--CVYFLDIQSKEHKNAVNKLQGHACPVLGVS--------FNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       165 dg--~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~--------~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      ++  .|++||+.+   ++.. .+.+|...+..+.        |+|+|.++++++.|+.+++|++
T Consensus       215 ~~~~~i~~~d~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          215 AREARLVTVDPRD---GSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             SSCEEEEEECTTT---CCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             CCeeEEEEEcCCC---CcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            88  899999998   6666 6667776666667        9999998999999999999997

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.02  E-value=2.4e-09  Score=93.04  Aligned_cols=116  Identities=10%  Similarity=0.119  Sum_probs=83.3

Q ss_pred             eeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcc-e--------------eEEE-eeecC
Q psy3599          87 ITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSK-Y--------------QVRS-TFCPI  150 (223)
Q Consensus        87 i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~-~--------------~i~~-~~s~~  150 (223)
                      +..++|+       |||+.|+.++++   .+.+||..++......  ..+.... +              .+.. .|+| 
T Consensus       116 ~~~~~~S-------PdG~~la~~~~~---~i~~~~~~~g~~~~~~--~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-  182 (723)
T 1xfd_A          116 LQYAGWG-------PKGQQLIFIFEN---NIYYCAHVGKQAIRVV--STGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-  182 (723)
T ss_dssp             CSBCCBC-------SSTTCEEEEETT---EEEEESSSSSCCEEEE--CCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-
T ss_pred             ccccEEC-------CCCCEEEEEECC---eEEEEECCCCceEEEe--cCCCCCceECcccceeEEEEeccCcceEEECC-
Confidence            7789999       999999998874   5889998877544322  1222211 0              0134 7999 


Q ss_pred             cccCCCcEEEEecCCC----------------------------------cEEEEEcccCcccccceeeccc------cc
Q psy3599         151 MSFREGACVVTGSEDS----------------------------------CVYFLDIQSKEHKNAVNKLQGH------AC  190 (223)
Q Consensus       151 ~~~~~~~~l~sgs~dg----------------------------------~v~iwd~~~~~~~~~~~~~~~h------~~  190 (223)
                          +++.|++++.|+                                  .|++||+.+   ++....+..+      ..
T Consensus       183 ----Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~---~~~~~~l~~~~~~~~~~~  255 (723)
T 1xfd_A          183 ----DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG---PTHDLEMMPPDDPRMREY  255 (723)
T ss_dssp             ----TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS---SCCCEECCCCCCGGGSSE
T ss_pred             ----CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC---CceeEEeeCCccCCCccc
Confidence                899998887553                                  799999988   6655555543      56


Q ss_pred             CEEEEEEecCCCEEEEEeC----CCcEEEeeCCCCC
Q psy3599         191 PVLGVSFNYDESLLATSDY----QGLIILWSREKHE  222 (223)
Q Consensus       191 ~v~~v~~~~~~~~l~s~s~----d~~i~iwd~~~~~  222 (223)
                      .+.+++|+|||..+++.+.    +..|++||+.+++
T Consensus       256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~  291 (723)
T 1xfd_A          256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV  291 (723)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred             eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc
Confidence            7899999999998877653    3579999998764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.00  E-value=2.6e-08  Score=84.30  Aligned_cols=114  Identities=9%  Similarity=0.087  Sum_probs=87.4

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecC--CCceEEeeeeeccccCcceeEEEeeec----CcccCCCcEE
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAANAVCILKVLDK--EGAVQLKRKFNVNHKSSKYQVRSTFCP----IMSFREGACV  159 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~--~~~~~~~~~~~~~h~~~~~~i~~~~s~----~~~~~~~~~l  159 (223)
                      .+..+.|+       +++++|++++.++  .+.+||+  .++..+...   .+...+  ...+|+|    .     ++++
T Consensus       180 ~~~~v~~s-------pdg~~l~v~~~d~--~V~v~D~~~~t~~~~~~i---~~g~~p--~~va~sp~~~~d-----g~~l  240 (543)
T 1nir_A          180 AVHISRMS-------ASGRYLLVIGRDA--RIDMIDLWAKEPTKVAEI---KIGIEA--RSVESSKFKGYE-----DRYT  240 (543)
T ss_dssp             TEEEEEEC-------TTSCEEEEEETTS--EEEEEETTSSSCEEEEEE---ECCSEE--EEEEECCSTTCT-----TTEE
T ss_pred             ccceEEEC-------CCCCEEEEECCCC--eEEEEECcCCCCcEEEEE---ecCCCc--ceEEeCCCcCCC-----CCEE
Confidence            38899999       9999999999888  8999999  777665542   232332  3337887    5     7778


Q ss_pred             EEec-CCCcEEEEEcccCcccccceeecc----------ccc-CEEEEEEecCCC-EEEEEeCCCcEEEeeCCCC
Q psy3599         160 VTGS-EDSCVYFLDIQSKEHKNAVNKLQG----------HAC-PVLGVSFNYDES-LLATSDYQGLIILWSREKH  221 (223)
Q Consensus       160 ~sgs-~dg~v~iwd~~~~~~~~~~~~~~~----------h~~-~v~~v~~~~~~~-~l~s~s~d~~i~iwd~~~~  221 (223)
                      ++++ .++.|.+||..+   .+++..+..          |.. .+.++.++|++. ++++...++.|.+||+.+.
T Consensus       241 ~v~~~~~~~v~v~D~~t---~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~  312 (543)
T 1nir_A          241 IAGAYWPPQFAIMDGET---LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI  312 (543)
T ss_dssp             EEEEEESSEEEEEETTT---CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTS
T ss_pred             EEEEccCCeEEEEeccc---cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCC
Confidence            7777 489999999998   888777754          223 789999999755 5667778999999998764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.99  E-value=8.7e-08  Score=76.34  Aligned_cols=122  Identities=7%  Similarity=0.051  Sum_probs=78.7

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEe-CCCeEEEEEecCCCceEEe-eeee--ccccCcceeEEEeeecCcccCCCcEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIA-ANAVCILKVLDKEGAVQLK-RKFN--VNHKSSKYQVRSTFCPIMSFREGACV  159 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~v~i~d~~~~~~~~-~~~~--~~h~~~~~~i~~~~s~~~~~~~~~~l  159 (223)
                      ...+..++|+       |+++++++++ .++  .+.+|+..++.... ..+.  ..+....  ....|+|     ++++|
T Consensus       210 ~~~~~~~~~s-------pdg~~l~v~~~~~~--~v~v~~~~~g~~~~~~~~~~~~~~~~~~--~~i~~sp-----dg~~l  273 (361)
T 3scy_A          210 GSGPRHLIFN-------SDGKFAYLINEIGG--TVIAFRYADGMLDEIQTVAADTVNAQGS--GDIHLSP-----DGKYL  273 (361)
T ss_dssp             TCCEEEEEEC-------TTSSEEEEEETTTC--EEEEEEEETTEEEEEEEEESCSSCCCCE--EEEEECT-----TSSEE
T ss_pred             CCCCeEEEEc-------CCCCEEEEEcCCCC--eEEEEEecCCceEEeEEEecCCCCCCCc--ccEEECC-----CCCEE
Confidence            3456789999       9998777665 566  78899987664311 1111  1111221  2337999     78887


Q ss_pred             EEecC--CCcEEEEEcccC-cccccceeecccccCEEEEEEecCCCEEEEEe-CCCcEEEe--eCCCCC
Q psy3599         160 VTGSE--DSCVYFLDIQSK-EHKNAVNKLQGHACPVLGVSFNYDESLLATSD-YQGLIILW--SREKHE  222 (223)
Q Consensus       160 ~sgs~--dg~v~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s-~d~~i~iw--d~~~~~  222 (223)
                      +.+..  ++.|.+|++... +..+.+..+.. ...+.+++|+|++++|++++ .++.|.+|  |..+++
T Consensus       274 ~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~  341 (361)
T 3scy_A          274 YASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGL  341 (361)
T ss_dssp             EEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred             EEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCc
Confidence            66555  489999999620 10223444443 44678999999999888887 67899996  444443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.98  E-value=2.3e-08  Score=78.49  Aligned_cols=116  Identities=10%  Similarity=0.085  Sum_probs=77.5

Q ss_pred             CCCeeEEEEeecccccCCCCeEEE-EEeCCCeEEEEEecCCCceE---EeeeeeccccCcceeEEEeeecCcccCCCcEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLV-NIAANAVCILKVLDKEGAVQ---LKRKFNVNHKSSKYQVRSTFCPIMSFREGACV  159 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~-~~~~~~~~~v~i~d~~~~~~---~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l  159 (223)
                      ...+..+.|+       +++++++ ++..++  .+.+||..++..   +.. +  .....+  ....|+|     ++.++
T Consensus       175 ~~~~~~~~~s-------pdg~~l~v~~~~~~--~v~v~d~~~~~~~~~~~~-~--~~~~~~--~~~~~sp-----dg~~l  235 (331)
T 3u4y_A          175 GTRPFNITFT-------PDGNFAFVANLIGN--SIGILETQNPENITLLNA-V--GTNNLP--GTIVVSR-----DGSTV  235 (331)
T ss_dssp             SSSEEEEEEC-------TTSSEEEEEETTTT--EEEEEECSSTTSCEEEEE-E--ECSSCC--CCEEECT-----TSSEE
T ss_pred             CCCccceEEC-------CCCCEEEEEeCCCC--eEEEEECCCCcccceeee-c--cCCCCC--ceEEECC-----CCCEE
Confidence            4567889999       8998554 555677  789999987765   433 2  222232  3337999     78865


Q ss_pred             EE-ecCCCcEEEEEcccCccccc--ceeeccc----cc---CEEEEEEecCCCEEEEEe-CCCcEEEeeCCCC
Q psy3599         160 VT-GSEDSCVYFLDIQSKEHKNA--VNKLQGH----AC---PVLGVSFNYDESLLATSD-YQGLIILWSREKH  221 (223)
Q Consensus       160 ~s-gs~dg~v~iwd~~~~~~~~~--~~~~~~h----~~---~v~~v~~~~~~~~l~s~s-~d~~i~iwd~~~~  221 (223)
                      +. ...++.|.+||..+   ++.  +..+..+    ..   .+..++|+|++..|++++ .++.|.+||+...
T Consensus       236 ~v~~~~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          236 YVLTESTVDVFNFNQLS---GTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             EEECSSEEEEEEEETTT---TEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             EEEEcCCCEEEEEECCC---CceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence            54 44578899999988   554  3332211    11   235689999999876555 5679999998764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.96  E-value=5.4e-08  Score=76.38  Aligned_cols=135  Identities=9%  Similarity=0.012  Sum_probs=91.8

Q ss_pred             cCCcEEEEEECC-CCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEe-CCCeEEEEEecCCCceEEeeeeecc
Q psy3599          58 STGVIVSILCDD-LGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIA-ANAVCILKVLDKEGAVQLKRKFNVN  135 (223)
Q Consensus        58 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~v~i~d~~~~~~~~~~~~~~  135 (223)
                      .++.|..  ||. ++++..  .+..+ ...+ .++|+       +++.++++++ .+.  .+.+||..++......+. .
T Consensus        18 ~~~~v~~--~d~~~~~~~~--~~~~~-~~~~-~~~~s-------~dg~~l~~~~~~~~--~i~~~d~~~~~~~~~~~~-~   81 (331)
T 3u4y_A           18 HLRRISF--FSTDTLEILN--QITLG-YDFV-DTAIT-------SDCSNVVVTSDFCQ--TLVQIETQLEPPKVVAIQ-E   81 (331)
T ss_dssp             GGTEEEE--EETTTCCEEE--EEECC-CCEE-EEEEC-------SSSCEEEEEESTTC--EEEEEECSSSSCEEEEEE-E
T ss_pred             CCCeEEE--EeCcccceee--eEEcc-CCcc-eEEEc-------CCCCEEEEEeCCCC--eEEEEECCCCceeEEecc-c
Confidence            3456663  444 455544  23333 4556 99999       8998666555 466  788999988765222322 3


Q ss_pred             ccCcceeEE-EeeecCcccCCCcEEEEecCCC---cEEEEEcccCcccccceeecccccCEEEEEEecCCCEE-EEEeCC
Q psy3599         136 HKSSKYQVR-STFCPIMSFREGACVVTGSEDS---CVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLL-ATSDYQ  210 (223)
Q Consensus       136 h~~~~~~i~-~~~s~~~~~~~~~~l~sgs~dg---~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~s~d  210 (223)
                      +...   .. ..|+|     ++.+++++..++   .|.+||+.+   ++.+..+..+ ....+++|+|+++.+ ++...+
T Consensus        82 ~~~~---~~~~~~s~-----dg~~l~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~  149 (331)
T 3u4y_A           82 GQSS---MADVDITP-----DDQFAVTVTGLNHPFNMQSYSFLK---NKFISTIPIP-YDAVGIAISPNGNGLILIDRSS  149 (331)
T ss_dssp             CSSC---CCCEEECT-----TSSEEEECCCSSSSCEEEEEETTT---TEEEEEEECC-TTEEEEEECTTSSCEEEEEETT
T ss_pred             CCCC---ccceEECC-----CCCEEEEecCCCCcccEEEEECCC---CCeEEEEECC-CCccceEECCCCCEEEEEecCC
Confidence            3333   45 47899     788888666653   899999998   7777777644 446899999999755 455566


Q ss_pred             Cc-EEEeeCCC
Q psy3599         211 GL-IILWSREK  220 (223)
Q Consensus       211 ~~-i~iwd~~~  220 (223)
                      +. +.+|++..
T Consensus       150 ~~~i~~~~~~~  160 (331)
T 3u4y_A          150 ANTVRRFKIDA  160 (331)
T ss_dssp             TTEEEEEEECT
T ss_pred             CceEEEEEECC
Confidence            88 99999764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.95  E-value=1e-08  Score=93.08  Aligned_cols=114  Identities=11%  Similarity=0.035  Sum_probs=92.5

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS  163 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs  163 (223)
                      ...+..++|+       |+|.+|++++.++  .+.+||+.++.... .. .+|....  ....|+|     ++.+|++++
T Consensus       378 ~~~~~~~~~S-------pDG~~la~~~~~~--~v~~~d~~tg~~~~-~~-~~~~~~v--~~~~~Sp-----DG~~la~~~  439 (1045)
T 1k32_A          378 LGNVFAMGVD-------RNGKFAVVANDRF--EIMTVDLETGKPTV-IE-RSREAMI--TDFTISD-----NSRFIAYGF  439 (1045)
T ss_dssp             CCSEEEEEEC-------TTSSEEEEEETTS--EEEEEETTTCCEEE-EE-ECSSSCC--CCEEECT-----TSCEEEEEE
T ss_pred             ccceeeeEEC-------CCCCEEEEECCCC--eEEEEECCCCceEE-ec-cCCCCCc--cceEECC-----CCCeEEEEe
Confidence            5678999999       9999999999888  89999999886544 32 2666663  2237999     799888877


Q ss_pred             CCC----------cEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         164 EDS----------CVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       164 ~dg----------~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      .++          .|++||+.+   ++ +..+..|...+.++.|+|+|..|++++.++..++|+..
T Consensus       440 ~~~~~~~~~~~~~~i~l~d~~~---g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~  501 (1045)
T 1k32_A          440 PLKHGETDGYVMQAIHVYDMEG---RK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  501 (1045)
T ss_dssp             EECSSTTCSCCEEEEEEEETTT---TE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             cCccccccCCCCCeEEEEECCC---Cc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence            654          899999998   66 66677788889999999999999999988888888754

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.94  E-value=2.6e-08  Score=79.87  Aligned_cols=142  Identities=12%  Similarity=0.109  Sum_probs=92.4

Q ss_pred             CcEEEEEECC-CCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCC-CceEEeeeeecccc
Q psy3599          60 GVIVSILCDD-LGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKE-GAVQLKRKFNVNHK  137 (223)
Q Consensus        60 ~~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~-~~~~~~~~~~~~h~  137 (223)
                      +.|..+.+++ +|.+.............+..++|+       +++++|++++.+   .+.+|++. ++..... ......
T Consensus        14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~s-------pdg~~l~~~~~~---~v~~~~~~~~g~~~~~-~~~~~~   82 (365)
T 1jof_A           14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFD-------HERKNIYGAAMK---KWSSFAVKSPTEIVHE-ASHPIG   82 (365)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEEC-------TTSSEEEEEEBT---EEEEEEEEETTEEEEE-EEEECC
T ss_pred             CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEEC-------CCCCEEEEEccc---eEEEEEECCCCCEEEe-eEeecC
Confidence            5688888887 666644332221224578899999       999988887765   57788876 5644321 110101


Q ss_pred             CcceeEEEeeecCcccCCCc--EEEEec-------------CCCcEEEEEcccCcccccceeec----ccccCEEEEEEe
Q psy3599         138 SSKYQVRSTFCPIMSFREGA--CVVTGS-------------EDSCVYFLDIQSKEHKNAVNKLQ----GHACPVLGVSFN  198 (223)
Q Consensus       138 ~~~~~i~~~~s~~~~~~~~~--~l~sgs-------------~dg~v~iwd~~~~~~~~~~~~~~----~h~~~v~~v~~~  198 (223)
                      +.+  ....|+|     +++  ++++++             .+|.+.+|++...  ++....+.    .+...+.+++|+
T Consensus        83 g~~--~~~~~sp-----dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~s  153 (365)
T 1jof_A           83 GHP--RANDADT-----NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET--GKLEKNVQNYEYQENTGIHGMVFD  153 (365)
T ss_dssp             SSG--GGGCTTS-----CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT--CCEEEEEEEEECCTTCCEEEEEEC
T ss_pred             CCC--ccEEECC-----CCCEEEEEEecCCcceeccceeecCCceEEEEccCCC--CcCcceEeeEEeCCCCcceEEEEC
Confidence            122  2236888     788  455654             6899999999731  44333332    245578999999


Q ss_pred             cCCCEEEEEe-CCCcEEEeeCC-CC
Q psy3599         199 YDESLLATSD-YQGLIILWSRE-KH  221 (223)
Q Consensus       199 ~~~~~l~s~s-~d~~i~iwd~~-~~  221 (223)
                      |+|+++++++ .++.|++||+. ++
T Consensus       154 pdG~~l~~~~~~~~~v~~~~~~~~g  178 (365)
T 1jof_A          154 PTETYLYSADLTANKLWTHRKLASG  178 (365)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTS
T ss_pred             CCCCEEEEEcCCCCEEEEEEECCCC
Confidence            9999887765 46899999987 44

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.94  E-value=1.5e-07  Score=72.47  Aligned_cols=117  Identities=9%  Similarity=0.138  Sum_probs=81.9

Q ss_pred             CCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecC
Q psy3599          85 CPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE  164 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~  164 (223)
                      ..+..++++       +++.++++...+.  .+.+|+.... .+...-..++...+  ...++++     ++.++++...
T Consensus       164 ~~p~~i~~~-------~~g~l~v~~~~~~--~i~~~~~~g~-~~~~~~~~g~~~~p--~~i~~d~-----~G~l~v~~~~  226 (286)
T 1q7f_A          164 EFPNGVVVN-------DKQEIFISDNRAH--CVKVFNYEGQ-YLRQIGGEGITNYP--IGVGINS-----NGEILIADNH  226 (286)
T ss_dssp             SSEEEEEEC-------SSSEEEEEEGGGT--EEEEEETTCC-EEEEESCTTTSCSE--EEEEECT-----TCCEEEEECS
T ss_pred             CCcEEEEEC-------CCCCEEEEECCCC--EEEEEcCCCC-EEEEEccCCccCCC--cEEEECC-----CCCEEEEeCC
Confidence            457889999       8899888877677  7888987543 33322111222332  3347888     7888888887


Q ss_pred             CC-cEEEEEcccCcccccceeecccc--cCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCCC
Q psy3599         165 DS-CVYFLDIQSKEHKNAVNKLQGHA--CPVLGVSFNYDESLLATSDYQGLIILWSREKHEP  223 (223)
Q Consensus       165 dg-~v~iwd~~~~~~~~~~~~~~~h~--~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~~  223 (223)
                      ++ .|.+||..    ++.+..+..+.  ..+.+++++|+|+++++ +.|+.|++|++....|
T Consensus       227 ~~~~i~~~~~~----g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          227 NNFNLTIFTQD----GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP  283 (286)
T ss_dssp             SSCEEEEECTT----SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred             CCEEEEEECCC----CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence            76 99999954    45555554433  24789999999987777 5799999999876544

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.93  E-value=3e-08  Score=77.69  Aligned_cols=138  Identities=12%  Similarity=0.098  Sum_probs=93.1

Q ss_pred             cCCcEEEEEECC-CCceeeeeeeeecCCC-CeeEEEEeecccccCCCCeEE-EEEeCCCeEEEEEecCCCceEEeeeeec
Q psy3599          58 STGVIVSILCDD-LGRLSKGKRLVLSQDC-PITCLSWRSWISREARDPTLL-VNIAANAVCILKVLDKEGAVQLKRKFNV  134 (223)
Q Consensus        58 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~~-~i~~l~~~~~~~~~~~~~~~l-~~~~~~~~~~v~i~d~~~~~~~~~~~~~  134 (223)
                      .++.|..  +|. +++.+.  .+...... .+..++|+       +++..+ +++..++  .+.+||..++..+... ..
T Consensus         9 ~~~~v~~--~d~~~~~~~~--~~~~~~~~~~~~~~~~s-------~dg~~l~v~~~~~~--~v~~~d~~~~~~~~~~-~~   74 (337)
T 1pby_B            9 RPDKLVV--IDTEKMAVDK--VITIADAGPTPMVPMVA-------PGGRIAYATVNKSE--SLVKIDLVTGETLGRI-DL   74 (337)
T ss_dssp             TTTEEEE--EETTTTEEEE--EEECTTCTTCCCCEEEC-------TTSSEEEEEETTTT--EEEEEETTTCCEEEEE-EC
T ss_pred             CCCeEEE--EECCCCcEEE--EEEcCCCCCCccceEEc-------CCCCEEEEEeCCCC--eEEEEECCCCCeEeeE-Ec
Confidence            3455664  344 455443  22222111 57899999       888655 5566677  7899999888665432 22


Q ss_pred             ccc----CcceeEEEeeecCcccCCCcEEEEec------------CCCcEEEEEcccCcccccceeecccccCEEEEEEe
Q psy3599         135 NHK----SSKYQVRSTFCPIMSFREGACVVTGS------------EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFN  198 (223)
Q Consensus       135 ~h~----~~~~~i~~~~s~~~~~~~~~~l~sgs------------~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~  198 (223)
                      ++.    ..+  ....|+|     +++.+++++            .++.|.+||+.+   ++.+..+.. ...+.+++|+
T Consensus        75 ~~~~~~~~~~--~~~~~s~-----dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~-~~~~~~~~~s  143 (337)
T 1pby_B           75 STPEERVKSL--FGAALSP-----DGKTLAIYESPVRLELTHFEVQPTRVALYDAET---LSRRKAFEA-PRQITMLAWA  143 (337)
T ss_dssp             CBTTEEEECT--TCEEECT-----TSSEEEEEEEEEEECSSCEEECCCEEEEEETTT---TEEEEEEEC-CSSCCCEEEC
T ss_pred             CCcccccccc--cceEECC-----CCCEEEEEecccccccccccccCceEEEEECCC---CcEEEEEeC-CCCcceeEEC
Confidence            321    122  2236888     788888775            579999999988   777666664 3457889999


Q ss_pred             cCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         199 YDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       199 ~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      |++..++++  ++.|.+||+.+++
T Consensus       144 ~dg~~l~~~--~~~i~~~d~~~~~  165 (337)
T 1pby_B          144 RDGSKLYGL--GRDLHVMDPEAGT  165 (337)
T ss_dssp             TTSSCEEEE--SSSEEEEETTTTE
T ss_pred             CCCCEEEEe--CCeEEEEECCCCc
Confidence            999988877  6889999998754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.92  E-value=8.5e-09  Score=81.30  Aligned_cols=107  Identities=10%  Similarity=0.075  Sum_probs=79.2

Q ss_pred             CCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcE-EEEecCCCcEEEEEcccCccc
Q psy3599         101 RDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGAC-VVTGSEDSCVYFLDIQSKEHK  179 (223)
Q Consensus       101 ~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~-l~sgs~dg~v~iwd~~~~~~~  179 (223)
                      +++.++++++.++  .+.+||..+++.+... ..+....+  ....|+|     ++.. ++++..++.|++||+.+   +
T Consensus         9 ~~~~~~v~~~~~~--~v~~~d~~~~~~~~~~-~~~~~~~~--~~~~~s~-----dg~~~~v~~~~~~~i~~~d~~t---~   75 (349)
T 1jmx_B            9 AGHEYMIVTNYPN--NLHVVDVASDTVYKSC-VMPDKFGP--GTAMMAP-----DNRTAYVLNNHYGDIYGIDLDT---C   75 (349)
T ss_dssp             TTCEEEEEEETTT--EEEEEETTTTEEEEEE-ECSSCCSS--CEEEECT-----TSSEEEEEETTTTEEEEEETTT---T
T ss_pred             CCCEEEEEeCCCC--eEEEEECCCCcEEEEE-ecCCCCCC--ceeEECC-----CCCEEEEEeCCCCcEEEEeCCC---C
Confidence            7788999998888  8999999988765542 21221122  3447898     6764 56667789999999998   7


Q ss_pred             ccceeeccc------ccCEEEEEEecCCCEEEEEeCC------------CcEEEeeCCC
Q psy3599         180 NAVNKLQGH------ACPVLGVSFNYDESLLATSDYQ------------GLIILWSREK  220 (223)
Q Consensus       180 ~~~~~~~~h------~~~v~~v~~~~~~~~l~s~s~d------------~~i~iwd~~~  220 (223)
                      +.+..+..+      ...+.+++|+|++..+++++.+            +.|.+||+.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~  134 (349)
T 1jmx_B           76 KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD  134 (349)
T ss_dssp             EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred             cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC
Confidence            766665532      2236789999999999988865            8999999876

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.89  E-value=1.4e-08  Score=88.94  Aligned_cols=114  Identities=12%  Similarity=0.096  Sum_probs=87.1

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeE--E-EeeecCcccCCCcEEEEe
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQV--R-STFCPIMSFREGACVVTG  162 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i--~-~~~s~~~~~~~~~~l~sg  162 (223)
                      ...++.|+       +++.+|+++  ++  .+++||..++.... .+ .+|......+  . ..|||     |++.|+.+
T Consensus        18 ~~~~~~w~-------~dg~~~~~~--~~--~i~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~Sp-----dg~~l~~~   79 (740)
T 4a5s_A           18 KLYSLRWI-------SDHEYLYKQ--EN--NILVFNAEYGNSSV-FL-ENSTFDEFGHSINDYSISP-----DGQFILLE   79 (740)
T ss_dssp             CCCCEEEC-------SSSEEEEEE--TT--EEEEEETTTCCEEE-EE-CTTTTTTCCSCCCEEEECT-----TSSEEEEE
T ss_pred             cccccEEC-------CCCcEEEEc--CC--cEEEEECCCCceEE-EE-echhhhhhcccccceEECC-----CCCEEEEE
Confidence            46689999       999999886  66  78999999886543 33 3665432111  1 25799     89999988


Q ss_pred             cCC---------CcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         163 SED---------SCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       163 s~d---------g~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +.+         +.+++||+.+   +++. .+..|...+..++|||||+.||.++ ++.|++||+.+++
T Consensus        80 ~~~~~~~r~~~~~~~~~~d~~~---~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~  143 (740)
T 4a5s_A           80 YNYVKQWRHSYTASYDIYDLNK---RQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLP  143 (740)
T ss_dssp             EEEEECSSSCEEEEEEEEETTT---TEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSC
T ss_pred             ECCeeeEEEccceEEEEEECCC---CcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCc
Confidence            876         5667999998   6643 4566777899999999999999985 7899999987754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.88  E-value=1e-08  Score=89.22  Aligned_cols=118  Identities=12%  Similarity=0.191  Sum_probs=81.1

Q ss_pred             CCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcce--------------eEEE-eeec
Q psy3599          85 CPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKY--------------QVRS-TFCP  149 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~--------------~i~~-~~s~  149 (223)
                      ..+..++|+       |||+.|+.+.++   .+++|+..++....... .++....+              .... .|+|
T Consensus       110 ~~~~~~~~S-------PDG~~la~~~~~---~i~~~~~~~g~~~~l~~-~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP  178 (719)
T 1z68_A          110 RPIQYLCWS-------PVGSKLAYVYQN---NIYLKQRPGDPPFQITF-NGRENKIFNGIPDWVYEEEMLATKYALWWSP  178 (719)
T ss_dssp             SSBCCEEEC-------SSTTCEEEEETT---EEEEESSTTSCCEECCC-CCBTTTEEESSCCHHHHHHTTCSSCCEEECT
T ss_pred             cccccceEC-------CCCCEEEEEECC---eEEEEeCCCCCcEEEec-CCCcCCeEcccccceeeeecccCcccEEECC
Confidence            457889999       999999988754   58899998775443221 13322110              0023 7999


Q ss_pred             CcccCCCcEEEEecCCC----------------------------------cEEEEEcccCcccccc--------eeecc
Q psy3599         150 IMSFREGACVVTGSEDS----------------------------------CVYFLDIQSKEHKNAV--------NKLQG  187 (223)
Q Consensus       150 ~~~~~~~~~l~sgs~dg----------------------------------~v~iwd~~~~~~~~~~--------~~~~~  187 (223)
                           |++.|++++.|.                                  .|++||+.+   ++..        ..+.+
T Consensus       179 -----DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~---~~~~~~~~~~~~~~~~~  250 (719)
T 1z68_A          179 -----NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY---PAYVGPQEVPVPAMIAS  250 (719)
T ss_dssp             -----TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC---HHHHCCEECCCCHHHHT
T ss_pred             -----CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC---CCccceeEccCCccCCC
Confidence                 899999887652                                  788999988   6543        22446


Q ss_pred             cccCEEEEEEecCCCEEEEEeCC----CcEEEee----CCCC
Q psy3599         188 HACPVLGVSFNYDESLLATSDYQ----GLIILWS----REKH  221 (223)
Q Consensus       188 h~~~v~~v~~~~~~~~l~s~s~d----~~i~iwd----~~~~  221 (223)
                      |...+.+++|+||+.++++....    ..|.+||    +.++
T Consensus       251 ~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g  292 (719)
T 1z68_A          251 SDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW  292 (719)
T ss_dssp             SCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE
T ss_pred             CcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC
Confidence            78889999999998777774422    2488889    6654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.84  E-value=3e-08  Score=84.29  Aligned_cols=111  Identities=7%  Similarity=-0.008  Sum_probs=82.0

Q ss_pred             CeeEEEEeecccccCCCC--eEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec
Q psy3599          86 PITCLSWRSWISREARDP--TLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS  163 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~--~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs  163 (223)
                      .+...+|+       +++  ..+++++.+.  .+ +||+.++.... ..  .+..    ....|+|     +|+.|++++
T Consensus       111 ~~~~~~~s-------~dg~~~~~~s~~~~~--~~-l~d~~~g~~~~-l~--~~~~----~~~~~sp-----DG~~la~~~  168 (582)
T 3o4h_A          111 PMRILSGV-------DTGEAVVFTGATEDR--VA-LYALDGGGLRE-LA--RLPG----FGFVSDI-----RGDLIAGLG  168 (582)
T ss_dssp             SBEEEEEE-------ECSSCEEEEEECSSC--EE-EEEEETTEEEE-EE--EESS----CEEEEEE-----ETTEEEEEE
T ss_pred             CceeeeeC-------CCCCeEEEEecCCCC--ce-EEEccCCcEEE-ee--cCCC----ceEEECC-----CCCEEEEEE
Confidence            34566777       555  4566666666  33 89988875433 21  2222    2225899     899999888


Q ss_pred             CC----CcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCC--cEEEeeCCCCC
Q psy3599         164 ED----SCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSREKHE  222 (223)
Q Consensus       164 ~d----g~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~--~i~iwd~~~~~  222 (223)
                      .+    +.|++||+.+   ++. ..+..|...+..++|+|||..|++++.++  .|++||+.+++
T Consensus       169 ~~~~~~~~i~~~d~~~---g~~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~  229 (582)
T 3o4h_A          169 FFGGGRVSLFTSNLSS---GGL-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS  229 (582)
T ss_dssp             EEETTEEEEEEEETTT---CCC-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred             EcCCCCeEEEEEcCCC---CCc-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence            77    7899999988   664 46677888899999999999999888888  89999998765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.84  E-value=9.1e-09  Score=89.53  Aligned_cols=101  Identities=9%  Similarity=0.173  Sum_probs=72.2

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeC---------CCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCC
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAA---------NAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFRE  155 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~---------~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~  155 (223)
                      .+.+++|+       |||++|+.++.         ++  .+.+||+.++..+... ...  ..   +.. .|+|     +
T Consensus        61 ~~~~~~~S-------pDg~~la~~~~~~~~~~~s~~~--~i~~~d~~~g~~~~~~-~l~--~~---~~~~~~SP-----D  120 (719)
T 1z68_A           61 NASNYGLS-------PDRQFVYLESDYSKLWRYSYTA--TYYIYDLSNGEFVRGN-ELP--RP---IQYLCWSP-----V  120 (719)
T ss_dssp             TCSEEEEC-------TTSSEEEEEEEEEECSSSCEEE--EEEEEETTTTEECCSS-CCC--SS---BCCEEECS-----S
T ss_pred             ceeeEEEC-------CCCCeEEEEecCceeEEeecce--EEEEEECCCCccccce-ecC--cc---cccceECC-----C
Confidence            48999999       99999998775         34  8999999988652110 011  22   333 7999     7


Q ss_pred             CcEEEEecCCCcEEEEEcccCcccccceee-cccccCE-----------------EEEEEecCCCEEEEEeCC
Q psy3599         156 GACVVTGSEDSCVYFLDIQSKEHKNAVNKL-QGHACPV-----------------LGVSFNYDESLLATSDYQ  210 (223)
Q Consensus       156 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~h~~~v-----------------~~v~~~~~~~~l~s~s~d  210 (223)
                      |+.|+.+. ++.|++||+.+   ++..... .++...|                 .+++|+|||..|++++.|
T Consensus       121 G~~la~~~-~~~i~~~~~~~---g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d  189 (719)
T 1z68_A          121 GSKLAYVY-QNNIYLKQRPG---DPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFN  189 (719)
T ss_dssp             TTCEEEEE-TTEEEEESSTT---SCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred             CCEEEEEE-CCeEEEEeCCC---CCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEEC
Confidence            99888875 77999999987   5543322 2333222                 489999999999998865

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.82  E-value=5.4e-07  Score=71.72  Aligned_cols=114  Identities=11%  Similarity=0.125  Sum_probs=74.2

Q ss_pred             eeEEEEeecccccCCCCeEEEEEe-CCCeEEEEEecCCCceE------Ee-----eeeeccccCcceeEEEeeecCcccC
Q psy3599          87 ITCLSWRSWISREARDPTLLVNIA-ANAVCILKVLDKEGAVQ------LK-----RKFNVNHKSSKYQVRSTFCPIMSFR  154 (223)
Q Consensus        87 i~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~v~i~d~~~~~~------~~-----~~~~~~h~~~~~~i~~~~s~~~~~~  154 (223)
                      +.+++|+       |++++|++++ .+.  .+.+|++.....      +.     ......+...+  ....|+|     
T Consensus       157 ~~~~~~s-------pdg~~l~~~~~~~~--~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~sp-----  220 (361)
T 3scy_A          157 LHCVRIT-------PDGKYLLADDLGTD--QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGP--RHLIFNS-----  220 (361)
T ss_dssp             EEEEEEC-------TTSSEEEEEETTTT--EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCE--EEEEECT-----
T ss_pred             ceEEEEC-------CCCCEEEEEeCCCC--EEEEEEEcCCCCcccccceeecccccceecCCCCCC--eEEEEcC-----
Confidence            4779999       9998665544 456  678887653321      10     11111222232  3348999     


Q ss_pred             CCcEEEEec-CCCcEEEEEcccCccccc--ceee---cccccCEEEEEEecCCCEEEEEeC--CCcEEEeeCC
Q psy3599         155 EGACVVTGS-EDSCVYFLDIQSKEHKNA--VNKL---QGHACPVLGVSFNYDESLLATSDY--QGLIILWSRE  219 (223)
Q Consensus       155 ~~~~l~sgs-~dg~v~iwd~~~~~~~~~--~~~~---~~h~~~v~~v~~~~~~~~l~s~s~--d~~i~iwd~~  219 (223)
                      ++++++.++ .++.|.+||+.+   +..  +..+   ..+......++|+|+|++|++++.  ++.|.+|++.
T Consensus       221 dg~~l~v~~~~~~~v~v~~~~~---g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          221 DGKFAYLINEIGGTVIAFRYAD---GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             TSSEEEEEETTTCEEEEEEEET---TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             CCCEEEEEcCCCCeEEEEEecC---CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            788776665 689999999986   432  2222   333445789999999998866654  4899999985

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.79  E-value=2.1e-07  Score=73.25  Aligned_cols=137  Identities=11%  Similarity=-0.018  Sum_probs=88.3

Q ss_pred             cCCcEEEEEECC-CCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEE-EEeCCCeEEEEEecCCCceEEeeeeecc
Q psy3599          58 STGVIVSILCDD-LGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLV-NIAANAVCILKVLDKEGAVQLKRKFNVN  135 (223)
Q Consensus        58 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~-~~~~~~~~~v~i~d~~~~~~~~~~~~~~  135 (223)
                      .++.|..  +|. +++...  .+.......+..++|+       +++.+++ ++..++  .+.+||..+++.+... ..+
T Consensus        19 ~~~~v~~--~d~~~~~~~~--~~~~~~~~~~~~~~~s-------~dg~~~~v~~~~~~--~i~~~d~~t~~~~~~~-~~~   84 (349)
T 1jmx_B           19 YPNNLHV--VDVASDTVYK--SCVMPDKFGPGTAMMA-------PDNRTAYVLNNHYG--DIYGIDLDTCKNTFHA-NLS   84 (349)
T ss_dssp             TTTEEEE--EETTTTEEEE--EEECSSCCSSCEEEEC-------TTSSEEEEEETTTT--EEEEEETTTTEEEEEE-ESC
T ss_pred             CCCeEEE--EECCCCcEEE--EEecCCCCCCceeEEC-------CCCCEEEEEeCCCC--cEEEEeCCCCcEEEEE-Ecc
Confidence            4556663  343 455443  2333312267899999       8887554 555677  7899999888665432 112


Q ss_pred             cc-----CcceeEEEeeecCcccCCCcEEEEecCC------------CcEEEEEcccCcccccc---eeecccccCEEEE
Q psy3599         136 HK-----SSKYQVRSTFCPIMSFREGACVVTGSED------------SCVYFLDIQSKEHKNAV---NKLQGHACPVLGV  195 (223)
Q Consensus       136 h~-----~~~~~i~~~~s~~~~~~~~~~l~sgs~d------------g~v~iwd~~~~~~~~~~---~~~~~h~~~v~~v  195 (223)
                      +.     ..+  ....|+|     +++++++++.+            +.|.+||+.+   ++..   ..+. +...+.++
T Consensus        85 ~~~~~~~~~~--~~~~~sp-----dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~---~~~~~~~~~~~-~~~~~~~~  153 (349)
T 1jmx_B           85 SVPGEVGRSM--YSFAISP-----DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD---GLEAKPVRTFP-MPRQVYLM  153 (349)
T ss_dssp             CSTTEEEECS--SCEEECT-----TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG---GGGBCCSEEEE-CCSSCCCE
T ss_pred             cccccccccc--cceEECC-----CCCEEEEEcccccccccccccCCCeEEEEECCC---ccccceeeecc-CCCcccce
Confidence            21     111  2236899     78888888865            8999999987   5433   3333 33468889


Q ss_pred             EEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         196 SFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       196 ~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +|+|++. ++.++  +.|.+||+.+++
T Consensus       154 ~~s~dg~-l~~~~--~~i~~~d~~~~~  177 (349)
T 1jmx_B          154 RAADDGS-LYVAG--PDIYKMDVKTGK  177 (349)
T ss_dssp             EECTTSC-EEEES--SSEEEECTTTCC
T ss_pred             eECCCCc-EEEcc--CcEEEEeCCCCc
Confidence            9999999 55554  349999998765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.72  E-value=1e-07  Score=74.61  Aligned_cols=106  Identities=15%  Similarity=0.208  Sum_probs=76.8

Q ss_pred             eEEEEEeCCCeEEEEEecCCCceEEeeeeeccccC-cceeEEEeeecCcccCCCc-EEEEecCCCcEEEEEcccCccccc
Q psy3599         104 TLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKS-SKYQVRSTFCPIMSFREGA-CVVTGSEDSCVYFLDIQSKEHKNA  181 (223)
Q Consensus       104 ~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~-~~~~i~~~~s~~~~~~~~~-~l~sgs~dg~v~iwd~~~~~~~~~  181 (223)
                      .+|++++.++  .+.+||..+++.+... ..++.. .+  ....|+|     ++. ++++++.++.|.+||+.+   ++.
T Consensus         2 ~~~v~~~~~~--~v~~~d~~~~~~~~~~-~~~~~~~~~--~~~~~s~-----dg~~l~v~~~~~~~v~~~d~~~---~~~   68 (337)
T 1pby_B            2 DYILAPARPD--KLVVIDTEKMAVDKVI-TIADAGPTP--MVPMVAP-----GGRIAYATVNKSESLVKIDLVT---GET   68 (337)
T ss_dssp             EEEEEEETTT--EEEEEETTTTEEEEEE-ECTTCTTCC--CCEEECT-----TSSEEEEEETTTTEEEEEETTT---CCE
T ss_pred             cEEEEcCCCC--eEEEEECCCCcEEEEE-EcCCCCCCc--cceEEcC-----CCCEEEEEeCCCCeEEEEECCC---CCe
Confidence            5788888888  8999999988766543 223321 22  3336999     675 456777789999999998   776


Q ss_pred             ceeecc-c----ccCEEEEEEecCCCEEEEEe------------CCCcEEEeeCCCCC
Q psy3599         182 VNKLQG-H----ACPVLGVSFNYDESLLATSD------------YQGLIILWSREKHE  222 (223)
Q Consensus       182 ~~~~~~-h----~~~v~~v~~~~~~~~l~s~s------------~d~~i~iwd~~~~~  222 (223)
                      +..+.. +    ...+.+++|+|++..+++++            .++.|.+||+.+++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~  126 (337)
T 1pby_B           69 LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS  126 (337)
T ss_dssp             EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE
T ss_pred             EeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc
Confidence            665543 1    22567899999999888886            57999999997653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.72  E-value=2.6e-06  Score=68.15  Aligned_cols=145  Identities=12%  Similarity=0.065  Sum_probs=88.0

Q ss_pred             cCCcEEEEEECCCCceeeeee-eeecCCCCeeEEEEeecccccCCCCeEEEEEe-CCCeEEEEEecCC-CceEEe-eeee
Q psy3599          58 STGVIVSILCDDLGRLSKGKR-LVLSQDCPITCLSWRSWISREARDPTLLVNIA-ANAVCILKVLDKE-GAVQLK-RKFN  133 (223)
Q Consensus        58 ~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~v~i~d~~-~~~~~~-~~~~  133 (223)
                      .++.+..+..+.+|++..... +.......+.++.|+       |+|++|+++. .+.  .+.+|+.. ++.... ..+.
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s-------pdG~~l~~~~~~~~--~v~~~~~~~~g~~~~~~~~~  187 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD-------PTETYLYSADLTAN--KLWTHRKLASGEVELVGSVD  187 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC-------TTSSEEEEEETTTT--EEEEEEECTTSCEEEEEEEE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC-------CCCCEEEEEcCCCC--EEEEEEECCCCCEEEeeeEe
Confidence            345566566665565543211 111225678999999       9998877665 345  68888887 554321 1111


Q ss_pred             c-cccCcceeEEEeeecCcccCCCcEEEEecC-CCcEEEEEcccCcccccc------eeec----cccc------CEEEE
Q psy3599         134 V-NHKSSKYQVRSTFCPIMSFREGACVVTGSE-DSCVYFLDIQSKEHKNAV------NKLQ----GHAC------PVLGV  195 (223)
Q Consensus       134 ~-~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~-dg~v~iwd~~~~~~~~~~------~~~~----~h~~------~v~~v  195 (223)
                      . .|...+  ....|+|     +++++++++. ++.|.+|++... .++..      ..+.    +|..      .+..+
T Consensus       188 ~~~~g~~p--~~~~~sp-----dg~~l~v~~~~~~~v~v~~~~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  259 (365)
T 1jof_A          188 APDPGDHP--RWVAMHP-----TGNYLYALMEAGNRICEYVIDPA-THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADV  259 (365)
T ss_dssp             CSSTTCCE--EEEEECT-----TSSEEEEEETTTTEEEEEEECTT-TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEE
T ss_pred             cCCCCCCC--CEeEECC-----CCCEEEEEECCCCeEEEEEEeCC-CCcEEEccceEEcCCCCcCCcccccccccccccE
Confidence            0 122332  3348999     7888777664 689999987530 03321      1222    2232      48899


Q ss_pred             E-EecCCCEEEEEeCC-C-----cEEEeeCC
Q psy3599         196 S-FNYDESLLATSDYQ-G-----LIILWSRE  219 (223)
Q Consensus       196 ~-~~~~~~~l~s~s~d-~-----~i~iwd~~  219 (223)
                      + |+|+|++|++++.+ +     .|.+|++.
T Consensus       260 ~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          260 CALTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             EEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             EEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence            9 99999988776533 2     89999985

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.72  E-value=6e-07  Score=77.83  Aligned_cols=126  Identities=15%  Similarity=0.158  Sum_probs=84.0

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCC---eEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANA---VCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACV  159 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~---~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l  159 (223)
                      ...+.++.|+       |||+.|++++.+.   ...+.+||..++..........+......+.. .|+|..   ++.++
T Consensus       257 ~~~~~~~~~s-------pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~---dg~~l  326 (706)
T 2z3z_A          257 EKFLTNLSWS-------PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGS---NNQFI  326 (706)
T ss_dssp             TCEEEEEEEC-------TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTC---SSEEE
T ss_pred             ceeEeeEEEE-------CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCC---CCEEE
Confidence            5678999999       9999888765332   22688899988733333321122211100222 688710   37789


Q ss_pred             EEecCCCcEEEEEcc-cCcccccceeecccccCEEE-EEEecCCCEEEEEeC-CC----cEEEeeCCCCC
Q psy3599         160 VTGSEDSCVYFLDIQ-SKEHKNAVNKLQGHACPVLG-VSFNYDESLLATSDY-QG----LIILWSREKHE  222 (223)
Q Consensus       160 ~sgs~dg~v~iwd~~-~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~l~s~s~-d~----~i~iwd~~~~~  222 (223)
                      ++++.|+.+++|++. .   +..+..+..|...+.. +.|+|++..|+.++. ++    .|..||+.+++
T Consensus       327 ~~~~~~g~~~l~~~~~~---~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          327 WQSRRDGWNHLYLYDTT---GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             EEECTTSSCEEEEEETT---SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             EEEccCCccEEEEEECC---CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence            999999999999987 4   5566777777777876 799999987766554 44    56777776553

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.72  E-value=1.1e-07  Score=81.84  Aligned_cols=117  Identities=13%  Similarity=0.089  Sum_probs=81.5

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCC--------CeEEEEEecCCC------ceEEeeeeec-cccCcceeEEE-ee
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAAN--------AVCILKVLDKEG------AVQLKRKFNV-NHKSSKYQVRS-TF  147 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~--------~~~~v~i~d~~~------~~~~~~~~~~-~h~~~~~~i~~-~~  147 (223)
                      ...+.+++|+       |||+.|+.++.+        ....+.+||..+      +.. ...  . .+...   +.. .|
T Consensus       129 ~~~~~~~~~s-------pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l--~~~~~~~---~~~~~~  195 (662)
T 3azo_A          129 GLRWADPVLL-------PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-REL--SDDAHRF---VTGPRL  195 (662)
T ss_dssp             CEEEEEEEEE-------TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EES--SCSCSSE---ECCCEE
T ss_pred             CccccCcEEC-------CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEE--EecCCCc---ccCceE
Confidence            3467889999       999998877754        223688899887      532 222  2 22222   444 79


Q ss_pred             ecCcccCCCcEEEEecCC--------CcEEEEEcc-cCccc---ccceeecccccCEEEEEEecCCCEEEEEeCCC--cE
Q psy3599         148 CPIMSFREGACVVTGSED--------SCVYFLDIQ-SKEHK---NAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LI  213 (223)
Q Consensus       148 s~~~~~~~~~~l~sgs~d--------g~v~iwd~~-~~~~~---~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~--~i  213 (223)
                      +|     +++.|+.++.+        ..|++||+. +   +   +......+|...+..+.|+|+|.++++++.++  .|
T Consensus       196 Sp-----DG~~la~~~~~~~~~~~~~~~i~~~d~~~~---g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l  267 (662)
T 3azo_A          196 SP-----DGRQAVWLAWDHPRMPWEGTELKTARVTED---GRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNL  267 (662)
T ss_dssp             CT-----TSSEEEEEEECTTCCTTTCEEEEEEEECTT---SCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEE
T ss_pred             CC-----CCCEEEEEECCCCCCCCCCcEEEEEEECCC---CcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEE
Confidence            99     89988877755        379999998 5   4   33334444567899999999999888888888  56


Q ss_pred             EEeeCCCC
Q psy3599         214 ILWSREKH  221 (223)
Q Consensus       214 ~iwd~~~~  221 (223)
                      .+||+.++
T Consensus       268 ~~~~~~~~  275 (662)
T 3azo_A          268 HRVDPATG  275 (662)
T ss_dssp             EEECTTTC
T ss_pred             EEEECCCC
Confidence            66666444

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.69  E-value=3.1e-06  Score=66.75  Aligned_cols=120  Identities=8%  Similarity=0.059  Sum_probs=84.6

Q ss_pred             eeEEEEeecccccCCC-CeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCc-ccCCCcEEEEecC
Q psy3599          87 ITCLSWRSWISREARD-PTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIM-SFREGACVVTGSE  164 (223)
Q Consensus        87 i~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~-~~~~~~~l~sgs~  164 (223)
                      ...++++       ++ +.++++...+.  .|++|+..++..+.......+....  ...+++|.. ...++..+++...
T Consensus       198 p~gia~d-------~~~g~l~v~d~~~~--~I~~~~~~~G~~~~~~~~~~~~~~~--~~~~~~pg~~~~~~g~~~v~~~~  266 (329)
T 3fvz_A          198 PHSLALV-------PHLDQLCVADRENG--RIQCFKTDTKEFVREIKHASFGRNV--FAISYIPGFLFAVNGKPYFGDQE  266 (329)
T ss_dssp             EEEEEEE-------TTTTEEEEEETTTT--EEEEEETTTCCEEEEECCTTTTTCE--EEEEEETTEEEEEECCCCTTCSC
T ss_pred             CcEEEEE-------CCCCEEEEEECCCC--EEEEEECCCCcEEEEEeccccCCCc--ceeeecCCEEEEeCCCEEeccCC
Confidence            7789999       77 88888887888  8999999877666543211233332  222566610 0012334444455


Q ss_pred             CCcEEEEEcccCcccccceee---cccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         165 DSCVYFLDIQSKEHKNAVNKL---QGHACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       165 dg~v~iwd~~~~~~~~~~~~~---~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      +..|++||..+   ++.+..+   .++-..+..++++|+|.++++...++.|++|++..
T Consensus       267 ~~~v~~~~~~~---g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          267 PVQGFVMNFSS---GEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CCCEEEEETTT---CCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             CcEEEEEEcCC---CeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            56899999998   8877776   35667789999999998888888999999999754

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.65  E-value=6.3e-06  Score=63.28  Aligned_cols=115  Identities=10%  Similarity=0.172  Sum_probs=81.6

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS  163 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs  163 (223)
                      ...+..++++       +++.++++...+.  .+.+|+.... .+...-..++...+  ...+++|     ++.++++..
T Consensus       120 ~~~~~~i~~~-------~~g~l~v~~~~~~--~i~~~~~~g~-~~~~~~~~~~~~~p--~~i~~~~-----~g~l~v~~~  182 (286)
T 1q7f_A          120 LQHPRGVTVD-------NKGRIIVVECKVM--RVIIFDQNGN-VLHKFGCSKHLEFP--NGVVVND-----KQEIFISDN  182 (286)
T ss_dssp             CSCEEEEEEC-------TTSCEEEEETTTT--EEEEECTTSC-EEEEEECTTTCSSE--EEEEECS-----SSEEEEEEG
T ss_pred             CCCceEEEEe-------CCCCEEEEECCCC--EEEEEcCCCC-EEEEeCCCCccCCc--EEEEECC-----CCCEEEEEC
Confidence            3567899999       8899888877777  7888886543 33322101222232  3337888     688888888


Q ss_pred             CCCcEEEEEcccCcccccceeeccc--ccCEEEEEEecCCCEEEEEeCCC-cEEEeeCC
Q psy3599         164 EDSCVYFLDIQSKEHKNAVNKLQGH--ACPVLGVSFNYDESLLATSDYQG-LIILWSRE  219 (223)
Q Consensus       164 ~dg~v~iwd~~~~~~~~~~~~~~~h--~~~v~~v~~~~~~~~l~s~s~d~-~i~iwd~~  219 (223)
                      .++.|++||...    +.+..+..+  ...+..++++++|+++++...++ .|.+||..
T Consensus       183 ~~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~  237 (286)
T 1q7f_A          183 RAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD  237 (286)
T ss_dssp             GGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred             CCCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence            899999999754    445555432  35688999999999988888776 99999964

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.63  E-value=2.2e-07  Score=80.79  Aligned_cols=115  Identities=11%  Similarity=0.101  Sum_probs=81.3

Q ss_pred             CCeeEEEEeecccccCCCCeEEEEE-----eCCCeEEEEEecCCCceEE-eeeeeccccCcceeEEEeeecCcccCCCcE
Q psy3599          85 CPITCLSWRSWISREARDPTLLVNI-----AANAVCILKVLDKEGAVQL-KRKFNVNHKSSKYQVRSTFCPIMSFREGAC  158 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~~~-----~~~~~~~v~i~d~~~~~~~-~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~  158 (223)
                      ..+..+.||       |||++|+.+     +++.  .+++||+.++..+ ...+  .....   ....|+|     ++..
T Consensus       121 ~~~~~~~~S-------PDG~~la~~~~~~G~~~~--~i~v~dl~tg~~~~~~~~--~~~~~---~~~~wsp-----Dg~~  181 (695)
T 2bkl_A          121 VSLGTWAVS-------WDGKKVAFAQKPNAADEA--VLHVIDVDSGEWSKVDVI--EGGKY---ATPKWTP-----DSKG  181 (695)
T ss_dssp             EEEEEEEEC-------TTSSEEEEEEEETTCSCC--EEEEEETTTCCBCSSCCB--SCCTT---CCCEECT-----TSSE
T ss_pred             EEEEEEEEC-------CCCCEEEEEECCCCCceE--EEEEEECCCCCCcCCccc--Ccccc---cceEEec-----CCCE
Confidence            368899999       999998843     2335  8999999988654 2111  11110   1126999     7999


Q ss_pred             EEEecCCCc-------------EEEEEcccCcccc----cceeecccccCEEEEEEecCCCEEEEEeCCC----cEEEee
Q psy3599         159 VVTGSEDSC-------------VYFLDIQSKEHKN----AVNKLQGHACPVLGVSFNYDESLLATSDYQG----LIILWS  217 (223)
Q Consensus       159 l~sgs~dg~-------------v~iwd~~~~~~~~----~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~----~i~iwd  217 (223)
                      |+.++.|..             |++|++.+   +.    ++.....|...+..+.|+|+|..|+.++.++    .|.+||
T Consensus       182 l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t---~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~  258 (695)
T 2bkl_A          182 FYYEWLPTDPSIKVDERPGYTTIRYHTLGT---EPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKR  258 (695)
T ss_dssp             EEEEECCCCTTSCGGGGGGGCEEEEEETTS---CGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEEC
T ss_pred             EEEEEecCCCCCccccCCCCCEEEEEECCC---CchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEc
Confidence            998888776             99999987   43    4444455666789999999999888877665    677776


Q ss_pred             CCCC
Q psy3599         218 REKH  221 (223)
Q Consensus       218 ~~~~  221 (223)
                      ..++
T Consensus       259 ~~~~  262 (695)
T 2bkl_A          259 PGEK  262 (695)
T ss_dssp             TTCS
T ss_pred             CCCC
Confidence            5443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.60  E-value=5.1e-07  Score=72.98  Aligned_cols=105  Identities=11%  Similarity=0.070  Sum_probs=74.4

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS  163 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs  163 (223)
                      .. |+.++|.         +.+|+++ .++  .+++||..+...... . ..|....  ....+.+      ++ +++++
T Consensus        88 p~-V~~l~fd---------~~~L~v~-~~~--~l~v~dv~sl~~~~~-~-~~~~~~v--~~i~~~~------p~-~av~~  143 (388)
T 1xip_A           88 PD-VIFVCFH---------GDQVLVS-TRN--ALYSLDLEELSEFRT-V-TSFEKPV--FQLKNVN------NT-LVILN  143 (388)
T ss_dssp             TT-EEEEEEE---------TTEEEEE-ESS--EEEEEESSSTTCEEE-E-EECSSCE--EEEEECS------SE-EEEEE
T ss_pred             CC-eeEEEEC---------CCEEEEE-cCC--cEEEEEchhhhccCc-c-ceeecce--eeEEecC------CC-EEEEE
Confidence            44 8888885         6777777 566  789999875543322 2 2454442  2223433      23 88889


Q ss_pred             CCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         164 EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       164 ~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      .||.+.+||+..   +....    +...|+|++|+|+|  ++.|..||++++|+...+
T Consensus       144 ~dG~L~v~dl~~---~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~  192 (388)
T 1xip_A          144 SVNDLSALDLRT---KSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNG  192 (388)
T ss_dssp             TTSEEEEEETTT---CCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETT
T ss_pred             CCCCEEEEEccC---Ccccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCc
Confidence            999999999997   55432    45679999999999  678889999999987643

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.57  E-value=7.7e-06  Score=62.05  Aligned_cols=116  Identities=13%  Similarity=0.044  Sum_probs=81.5

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCC
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSED  165 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~d  165 (223)
                      .+..++++       +++.++++...++  .+.+|+..+.......  ..+...+  ...++.+     ++.++++...+
T Consensus       151 ~p~~i~~~-------~~g~l~v~~~~~~--~i~~~~~~~~~~~~~~--~~~~~~p--~~i~~d~-----~g~l~v~~~~~  212 (270)
T 1rwi_B          151 DPDGVAVD-------NSGNVYVTDTDNN--RVVKLEAESNNQVVLP--FTDITAP--WGIAVDE-----AGTVYVTEHNT  212 (270)
T ss_dssp             SCCCEEEC-------TTCCEEEEEGGGT--EEEEECTTTCCEEECC--CSSCCSE--EEEEECT-----TCCEEEEETTT
T ss_pred             CceeEEEe-------CCCCEEEEECCCC--EEEEEecCCCceEeec--ccCCCCc--eEEEECC-----CCCEEEEECCC
Confidence            56778888       8888877776666  6788898766443321  1222232  3336787     68888888888


Q ss_pred             CcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         166 SCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       166 g~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +.|.+||...   .........+-..+.+++++++|+++++...++.|+++++...+
T Consensus       213 ~~v~~~~~~~---~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          213 NQVVKLLAGS---TTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             SCEEEECTTC---SCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CcEEEEcCCC---CcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            8999999876   43322222333568999999999988898899999999986543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.56  E-value=1.6e-06  Score=75.85  Aligned_cols=122  Identities=8%  Similarity=0.080  Sum_probs=78.3

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcce--------------eEE-Eeee
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKY--------------QVR-STFC  148 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~--------------~i~-~~~s  148 (223)
                      ...+....||       |||+.|+.+.++   .+.+|+..++....... .++....+              ... ..||
T Consensus       111 ~~~~~~~~~S-------PdG~~la~~~~~---~i~~~~~~~~~~~~lt~-~g~~~~~~~g~~~~v~~ee~~~~~~~~~wS  179 (740)
T 4a5s_A          111 PNNTQWVTWS-------PVGHKLAYVWNN---DIYVKIEPNLPSYRITW-TGKEDIIYNGITDWVYEEEVFSAYSALWWS  179 (740)
T ss_dssp             CTTEEEEEEC-------SSTTCEEEEETT---EEEEESSTTSCCEECCS-CCBTTTEEESBCCHHHHHHTSSSSBCEEEC
T ss_pred             CCcceeeEEC-------CCCCEEEEEECC---eEEEEECCCCceEEEcC-CCCccceecCcccccccchhcCCCcceEEC
Confidence            5678999999       999999988764   47889988775443222 13332210              011 2699


Q ss_pred             cCcccCCCcEEEEecCCC------------------------------------cEEEEEccc---Ccccccceeec---
Q psy3599         149 PIMSFREGACVVTGSEDS------------------------------------CVYFLDIQS---KEHKNAVNKLQ---  186 (223)
Q Consensus       149 ~~~~~~~~~~l~sgs~dg------------------------------------~v~iwd~~~---~~~~~~~~~~~---  186 (223)
                      |     ||+.|+.++.|.                                    .|++||+.+   .... ....+.   
T Consensus       180 p-----Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~-~~~~l~~~~  253 (740)
T 4a5s_A          180 P-----NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA-TSIQITAPA  253 (740)
T ss_dssp             T-----TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC-CEEEECCCH
T ss_pred             C-----CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc-eEEEecCCc
Confidence            9     899888875432                                    366677654   2100 112222   


Q ss_pred             ---ccccCEEEEEEecCCCEEEEEe----CCCcEEEeeCCCCC
Q psy3599         187 ---GHACPVLGVSFNYDESLLATSD----YQGLIILWSREKHE  222 (223)
Q Consensus       187 ---~h~~~v~~v~~~~~~~~l~s~s----~d~~i~iwd~~~~~  222 (223)
                         +|...+..++|+|||..++...    .+..|++||+.+++
T Consensus       254 ~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence               3677799999999999666553    23469999988765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.54  E-value=5.1e-06  Score=65.48  Aligned_cols=92  Identities=22%  Similarity=0.207  Sum_probs=65.4

Q ss_pred             EEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccc-cceee---------
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKN-AVNKL---------  185 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~---------  185 (223)
                      .+.+||..++..+.. +..++...+  ...+++|     ++.++++...++.|++||...   .. .+..+         
T Consensus        70 ~i~~~d~~~g~~~~~-~~~~~~~~p--~gia~d~-----~g~l~v~d~~~~~v~~~~~~g---~~~~~~~~~~~~~~g~~  138 (329)
T 3fvz_A           70 TILVIDPNNAEILQS-SGKNLFYLP--HGLSIDT-----DGNYWVTDVALHQVFKLDPHS---KEGPLLILGRSMQPGSD  138 (329)
T ss_dssp             CEEEECTTTCCEEEE-ECTTTCSSE--EEEEECT-----TSCEEEEETTTTEEEEECTTC---SSCCSEEESBTTBCCCS
T ss_pred             cEEEEECCCCeEEec-cCCCccCCc--eEEEECC-----CCCEEEEECCCCEEEEEeCCC---CeEEEEEecccCCCCCC
Confidence            477889887765543 221333332  3347888     788999999999999999765   32 44444         


Q ss_pred             cccccCEEEEEEec-CCCEEEEEe-CCCcEEEeeC
Q psy3599         186 QGHACPVLGVSFNY-DESLLATSD-YQGLIILWSR  218 (223)
Q Consensus       186 ~~h~~~v~~v~~~~-~~~~l~s~s-~d~~i~iwd~  218 (223)
                      .++-.....++++| ++.++++.+ .++.|++||.
T Consensus       139 ~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~  173 (329)
T 3fvz_A          139 QNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP  173 (329)
T ss_dssp             TTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT
T ss_pred             ccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC
Confidence            23444689999999 788888886 6899999994

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.53  E-value=2e-06  Score=74.04  Aligned_cols=115  Identities=12%  Similarity=0.051  Sum_probs=75.6

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeCCC------eEEEEEecCC-Cc--eEEeeeeeccccCcceeEEE-eeecCcccCC
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAANA------VCILKVLDKE-GA--VQLKRKFNVNHKSSKYQVRS-TFCPIMSFRE  155 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~~~------~~~v~i~d~~-~~--~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~  155 (223)
                      .+..+.|+       |||++|+.++.+.      -..+.+||+. ++  ....... .+|...   +.. .|+|     +
T Consensus       189 ~~~~~~~S-------pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-~~~~~~---~~~~~~sp-----d  252 (662)
T 3azo_A          189 FVTGPRLS-------PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL-GGPEEA---IAQAEWAP-----D  252 (662)
T ss_dssp             EECCCEEC-------TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE-EETTBC---EEEEEECT-----T
T ss_pred             cccCceEC-------CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC-CCCCce---EcceEECC-----C
Confidence            45567888       9999998766321      1268888988 45  1222222 244444   444 7999     7


Q ss_pred             CcEEEEecCCC--cEEEEEcccCcccccceeecccccC--------EEEEEEecCCCEEEEEeCCCcEEEe--eCCC
Q psy3599         156 GACVVTGSEDS--CVYFLDIQSKEHKNAVNKLQGHACP--------VLGVSFNYDESLLATSDYQGLIILW--SREK  220 (223)
Q Consensus       156 ~~~l~sgs~dg--~v~iwd~~~~~~~~~~~~~~~h~~~--------v~~v~~~~~~~~l~s~s~d~~i~iw--d~~~  220 (223)
                      +.++++++.++  .|++||..+   ++.......+...        +.+++|+|++.++++++. +.++||  |+.+
T Consensus       253 g~l~~~~~~~~~~~l~~~~~~~---~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~  325 (662)
T 3azo_A          253 GSLIVATDRTGWWNLHRVDPAT---GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES  325 (662)
T ss_dssp             SCEEEEECTTSSCEEEEECTTT---CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT
T ss_pred             CeEEEEECCCCCeEEEEEECCC---CceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC
Confidence            88888888888  566666655   4443333333222        567889999999999998 999999  5543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.51  E-value=1.7e-06  Score=69.30  Aligned_cols=114  Identities=14%  Similarity=0.007  Sum_probs=78.9

Q ss_pred             EEEeecccccCCCCeEEEEEeC-CCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcE
Q psy3599          90 LSWRSWISREARDPTLLVNIAA-NAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV  168 (223)
Q Consensus        90 l~~~~~~~~~~~~~~~l~~~~~-~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v  168 (223)
                      .+|+       |||+.|+.++. ++...+.+||..++..... . .++....  ....|+|     ++..|+.++.++.+
T Consensus        41 ~~~S-------pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-t-~~~~~~~--~~~~~sp-----dg~~l~~~~~~~~l  104 (388)
T 3pe7_A           41 KCFT-------RDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-T-EGRGDNT--FGGFLSP-----DDDALFYVKDGRNL  104 (388)
T ss_dssp             CCBC-------TTSCEEEEEECTTSSCEEEEEETTTCEEEEC-C-CSSCBCS--SSCEECT-----TSSEEEEEETTTEE
T ss_pred             ccCC-------CCCCEEEEEEcCCCCceEEEEeCCCCceEEe-e-eCCCCCc--cceEEcC-----CCCEEEEEeCCCeE
Confidence            7899       99999888775 5522466788888765432 2 2443331  1236999     89999999999999


Q ss_pred             EEEEcccCcccccceeecccccCEEEEE--EecCCCEEEEE----------------------eCCCcEEEeeCCCCC
Q psy3599         169 YFLDIQSKEHKNAVNKLQGHACPVLGVS--FNYDESLLATS----------------------DYQGLIILWSREKHE  222 (223)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~h~~~v~~v~--~~~~~~~l~s~----------------------s~d~~i~iwd~~~~~  222 (223)
                      ++||+.+   ++....+..+...+....  ++|++..++..                      +.+..|.+||+.+++
T Consensus       105 ~~~d~~~---g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~  179 (388)
T 3pe7_A          105 MRVDLAT---LEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE  179 (388)
T ss_dssp             EEEETTT---CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred             EEEECCC---CcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence            9999998   665555555555454343  48899888742                      234679999998765

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.50  E-value=1.5e-06  Score=75.70  Aligned_cols=115  Identities=9%  Similarity=0.101  Sum_probs=82.3

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeC-CC--eEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEe
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAA-NA--VCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTG  162 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~-~~--~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sg  162 (223)
                      .+..+.||       |||++|+.+++ ++  ...+++||+.++..+....  .+.. .  -...|+|     |++.|+.+
T Consensus       126 ~~~~~~~S-------PDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~--~~~~-~--~~~~wsp-----Dg~~l~~~  188 (710)
T 2xdw_A          126 ALRGYAFS-------EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--ERVK-F--SCMAWTH-----DGKGMFYN  188 (710)
T ss_dssp             EEEEEEEC-------TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE--EEEC-S--CCEEECT-----TSSEEEEE
T ss_pred             EEEEEEEC-------CCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc--cCcc-c--ceEEEEe-----CCCEEEEE
Confidence            57889999       99999886553 22  2268999999987665332  2211 1  1226999     79988888


Q ss_pred             cCCCc----------------EEEEEcccCcccc----cceeecccccCEEEEEEecCCCEEEEEeC-----CCcEEEee
Q psy3599         163 SEDSC----------------VYFLDIQSKEHKN----AVNKLQGHACPVLGVSFNYDESLLATSDY-----QGLIILWS  217 (223)
Q Consensus       163 s~dg~----------------v~iwd~~~~~~~~----~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-----d~~i~iwd  217 (223)
                      +.++.                |++|++.+   +.    ++.....|...+..+.|+|+|..|+.++.     +..|++||
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~t---~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d  265 (710)
T 2xdw_A          189 AYPQQDGKSDGTETSTNLHQKLYYHVLGT---DQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD  265 (710)
T ss_dssp             ECCCCSSCCSSSCCCCCCCCEEEEEETTS---CGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred             EECCccccccccccccCCCCEEEEEECCC---CcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEE
Confidence            87765                99999987   43    23333345666889999999998887764     56899999


Q ss_pred             CCC
Q psy3599         218 REK  220 (223)
Q Consensus       218 ~~~  220 (223)
                      +.+
T Consensus       266 ~~~  268 (710)
T 2xdw_A          266 LQQ  268 (710)
T ss_dssp             GGG
T ss_pred             Ccc
Confidence            875

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.49  E-value=5.4e-06  Score=66.28  Aligned_cols=118  Identities=8%  Similarity=-0.092  Sum_probs=79.6

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEE--
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVT--  161 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~s--  161 (223)
                      ...+....|+       ||++.|+.++.+.  .+.+||+.+++.... + ..+..........++|     ++..++.  
T Consensus        80 ~~~~~~~~~s-------pdg~~l~~~~~~~--~l~~~d~~~g~~~~~-~-~~~~~~~~~~~~~~~~-----dg~~l~~~~  143 (388)
T 3pe7_A           80 GDNTFGGFLS-------PDDDALFYVKDGR--NLMRVDLATLEENVV-Y-QVPAEWVGYGTWVANS-----DCTKLVGIE  143 (388)
T ss_dssp             CBCSSSCEEC-------TTSSEEEEEETTT--EEEEEETTTCCEEEE-E-ECCTTEEEEEEEEECT-----TSSEEEEEE
T ss_pred             CCCccceEEc-------CCCCEEEEEeCCC--eEEEEECCCCcceee-e-echhhcccccceeECC-----CCCeecccc
Confidence            3445567899       9999999988877  788999988764432 2 1333321001113466     6777763  


Q ss_pred             --------------------ecCCCcEEEEEcccCcccccceeecccccCEEEEEEec-CCCEEEEEeCC------CcEE
Q psy3599         162 --------------------GSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNY-DESLLATSDYQ------GLII  214 (223)
Q Consensus       162 --------------------gs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~d------~~i~  214 (223)
                                          ...+..|++||+.+   ++. ..+..+...+..+.|+| ++..|+.++.+      ..|.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~---g~~-~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~  219 (388)
T 3pe7_A          144 IRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT---GES-TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMW  219 (388)
T ss_dssp             EEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT---CCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEE
T ss_pred             ccCcccccccccchhhhhhccCCcceEEEEECCC---Cce-EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEE
Confidence                                23446799999988   653 34445667789999999 99988877753      3688


Q ss_pred             EeeCCCC
Q psy3599         215 LWSREKH  221 (223)
Q Consensus       215 iwd~~~~  221 (223)
                      ++|+..+
T Consensus       220 ~~d~~~~  226 (388)
T 3pe7_A          220 LINEDGT  226 (388)
T ss_dssp             EEETTSC
T ss_pred             EEeCCCC
Confidence            8887654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.41  E-value=1.2e-05  Score=61.97  Aligned_cols=135  Identities=9%  Similarity=0.088  Sum_probs=90.0

Q ss_pred             cCCcEEEEEECC-CCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccc
Q psy3599          58 STGVIVSILCDD-LGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNH  136 (223)
Q Consensus        58 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h  136 (223)
                      .++.|.  .+|+ +|+++-  .+..+....+.++.++       ++|++|++ . +.  .+..+|. +++.+... . .+
T Consensus        13 ~~~~v~--~~d~~tG~~~w--~~~~~~~~~~~~~~~~-------pdG~ilvs-~-~~--~V~~~d~-~G~~~W~~-~-~~   74 (276)
T 3no2_A           13 GWNKIA--IINKDTKEIVW--EYPLEKGWECNSVAAT-------KAGEILFS-Y-SK--GAKMITR-DGRELWNI-A-AP   74 (276)
T ss_dssp             TCSEEE--EEETTTTEEEE--EEECCTTCCCCEEEEC-------TTSCEEEE-C-BS--EEEEECT-TSCEEEEE-E-CC
T ss_pred             CCCEEE--EEECCCCeEEE--EeCCCccCCCcCeEEC-------CCCCEEEe-C-CC--CEEEECC-CCCEEEEE-c-CC
Confidence            456666  5566 788764  2333312468899999       89999883 3 44  5778898 67666643 2 22


Q ss_pred             cCcceeEEE-eeecCcccCCCcEEEEecC-CCcEEEEEcccCcccccceeec------ccccCEEEEEEecCCCEEEEEe
Q psy3599         137 KSSKYQVRS-TFCPIMSFREGACVVTGSE-DSCVYFLDIQSKEHKNAVNKLQ------GHACPVLGVSFNYDESLLATSD  208 (223)
Q Consensus       137 ~~~~~~i~~-~~s~~~~~~~~~~l~sgs~-dg~v~iwd~~~~~~~~~~~~~~------~h~~~v~~v~~~~~~~~l~s~s  208 (223)
                      ....  +.. .+.+     +++++++.+. ++.+..+|. .   ++.+..+.      .+......+...++|+++++..
T Consensus        75 ~~~~--~~~~~~~~-----dG~~lv~~~~~~~~v~~vd~-~---Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~  143 (276)
T 3no2_A           75 AGCE--MQTARILP-----DGNALVAWCGHPSTILEVNM-K---GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF  143 (276)
T ss_dssp             TTCE--EEEEEECT-----TSCEEEEEESTTEEEEEECT-T---SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET
T ss_pred             CCcc--ccccEECC-----CCCEEEEecCCCCEEEEEeC-C---CCEEEEEeccCCCCcccccccCceECCCCCEEEEec
Confidence            2222  444 6777     7999998877 777777775 3   45554443      2222345567789999999999


Q ss_pred             CCCcEEEeeCCCCC
Q psy3599         209 YQGLIILWSREKHE  222 (223)
Q Consensus       209 ~d~~i~iwd~~~~~  222 (223)
                      .++.|..||.. ++
T Consensus       144 ~~~~v~~~d~~-G~  156 (276)
T 3no2_A          144 ATSEVREIAPN-GQ  156 (276)
T ss_dssp             TTTEEEEECTT-SC
T ss_pred             CCCEEEEECCC-CC
Confidence            99999999987 54

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.37  E-value=6e-05  Score=58.98  Aligned_cols=116  Identities=13%  Similarity=0.151  Sum_probs=73.5

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCC----CeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAAN----AVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGAC  158 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~----~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~  158 (223)
                      ...+.++.++       +++.++++...+    .  .+.+||..++..........+...   +.. .++|     ++.+
T Consensus        86 ~~~~~~i~~~-------~dg~l~v~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~---~~~i~~d~-----~g~l  148 (333)
T 2dg1_A           86 KANPAAIKIH-------KDGRLFVCYLGDFKSTG--GIFAATENGDNLQDIIEDLSTAYC---IDDMVFDS-----KGGF  148 (333)
T ss_dssp             SSSEEEEEEC-------TTSCEEEEECTTSSSCC--EEEEECTTSCSCEEEECSSSSCCC---EEEEEECT-----TSCE
T ss_pred             CCCcceEEEC-------CCCcEEEEeCCCCCCCc--eEEEEeCCCCEEEEEEccCccCCc---ccceEECC-----CCCE
Confidence            5678899999       899988887665    4  567788876643211100112222   444 7888     6887


Q ss_pred             EEEecC------CCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEE-EEEeCCCcEEEeeCCC
Q psy3599         159 VVTGSE------DSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLL-ATSDYQGLIILWSREK  220 (223)
Q Consensus       159 l~sgs~------dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~s~d~~i~iwd~~~  220 (223)
                      +++...      .+.|+.+|...   ++.. .+..+...+..++|+|++..+ ++.+.++.|.+||+.+
T Consensus       149 ~v~~~~~~~~~~~~~l~~~~~~~---~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          149 YFTDFRGYSTNPLGGVYYVSPDF---RTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             EEEECCCBTTBCCEEEEEECTTS---CCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             EEEeccccccCCCceEEEEeCCC---CEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence            777654      24566666554   3332 222233457889999999855 5555678999999853

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.36  E-value=3.7e-06  Score=73.62  Aligned_cols=115  Identities=10%  Similarity=0.046  Sum_probs=78.9

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeCC-C--eEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEe
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAAN-A--VCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTG  162 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~~-~--~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sg  162 (223)
                      .+..+.|+       |||++|+.+++. +  ...+++||+.++..+.....   ....  ....|+|     + +.|+.+
T Consensus       164 ~~~~~~~S-------PDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~---~~~~--~~~~wsp-----D-~~l~~~  225 (741)
T 1yr2_A          164 ALDAWAAS-------DDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK---WVKF--SGLAWLG-----N-DALLYS  225 (741)
T ss_dssp             EEEEEEEC-------TTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE---EEES--CCCEEST-----T-SEEEEE
T ss_pred             EEEeEEEC-------CCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC---Ccee--ccEEEEC-----C-CEEEEE
Confidence            57789999       999998876532 2  23789999998876543211   1110  1126999     8 888777


Q ss_pred             cCCCc--------------EEEEEcccCcccc----cceeecccccCEEEEEEecCCCEEEEEeCCC-----cEEEeeCC
Q psy3599         163 SEDSC--------------VYFLDIQSKEHKN----AVNKLQGHACPVLGVSFNYDESLLATSDYQG-----LIILWSRE  219 (223)
Q Consensus       163 s~dg~--------------v~iwd~~~~~~~~----~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~-----~i~iwd~~  219 (223)
                      +.++.              |++|++.+   +.    ++.....+...+..+.|+|+|..|+..+.++     .|++||+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~v~~~~lgt---~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~  302 (741)
T 1yr2_A          226 RFAEPKEGQAFQALNYNQTVWLHRLGT---PQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVT  302 (741)
T ss_dssp             ECCCC--------CCCCCEEEEEETTS---CGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEE
T ss_pred             EecCcccccccccCCCCCEEEEEECCC---CchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECC
Confidence            76654              88999877   33    3333333444688999999999888777543     79999987


Q ss_pred             CC
Q psy3599         220 KH  221 (223)
Q Consensus       220 ~~  221 (223)
                      ++
T Consensus       303 ~~  304 (741)
T 1yr2_A          303 NG  304 (741)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.34  E-value=4.1e-05  Score=58.93  Aligned_cols=133  Identities=11%  Similarity=0.038  Sum_probs=89.6

Q ss_pred             EECCCCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeC-CCeEEEEEecCCCceEEeeeeec----cccCcc
Q psy3599          66 LCDDLGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAA-NAVCILKVLDKEGAVQLKRKFNV----NHKSSK  140 (223)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~v~i~d~~~~~~~~~~~~~----~h~~~~  140 (223)
                      .++++|+++-.  +.......+.++.+.       ++|.++++.+. +.  .+..+|. .++.+...-..    ++....
T Consensus        60 ~~d~~G~~~W~--~~~~~~~~~~~~~~~-------~dG~~lv~~~~~~~--~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~  127 (276)
T 3no2_A           60 MITRDGRELWN--IAAPAGCEMQTARIL-------PDGNALVAWCGHPS--TILEVNM-KGEVLSKTEFETGIERPHAQF  127 (276)
T ss_dssp             EECTTSCEEEE--EECCTTCEEEEEEEC-------TTSCEEEEEESTTE--EEEEECT-TSCEEEEEEECCSCSSGGGSC
T ss_pred             EECCCCCEEEE--EcCCCCccccccEEC-------CCCCEEEEecCCCC--EEEEEeC-CCCEEEEEeccCCCCcccccc
Confidence            67777776642  333323568888898       99999998776 55  5556676 45444432100    111111


Q ss_pred             eeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         141 YQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       141 ~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                        -.....+     +++++++...++.|..||..    ++.+.++... ....++...++++++++++.++.|..+|..+
T Consensus       128 --~~v~~~~-----~G~~lv~~~~~~~v~~~d~~----G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t  195 (276)
T 3no2_A          128 --RQINKNK-----KGNYLVPLFATSEVREIAPN----GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLES  195 (276)
T ss_dssp             --SCCEECT-----TSCEEEEETTTTEEEEECTT----SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTT
T ss_pred             --cCceECC-----CCCEEEEecCCCEEEEECCC----CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcC
Confidence              1113455     79999999999999999965    4666666653 3456677789999999998888999999887


Q ss_pred             CC
Q psy3599         221 HE  222 (223)
Q Consensus       221 ~~  222 (223)
                      ++
T Consensus       196 G~  197 (276)
T 3no2_A          196 NR  197 (276)
T ss_dssp             CC
T ss_pred             Cc
Confidence            75

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.32  E-value=5.3e-05  Score=59.31  Aligned_cols=115  Identities=15%  Similarity=0.144  Sum_probs=79.6

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEe
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTG  162 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sg  162 (223)
                      ...+.++.|+       +++.+++++..++  .+.+||..++.... .. ..+...   +.. +++|     ++.++++.
T Consensus        44 ~~~~~~~~~~-------~~g~l~~~~~~~~--~i~~~d~~~~~~~~-~~-~~~~~~---~~~i~~~~-----dg~l~v~~  104 (333)
T 2dg1_A           44 GLQLEGLNFD-------RQGQLFLLDVFEG--NIFKINPETKEIKR-PF-VSHKAN---PAAIKIHK-----DGRLFVCY  104 (333)
T ss_dssp             CCCEEEEEEC-------TTSCEEEEETTTC--EEEEECTTTCCEEE-EE-ECSSSS---EEEEEECT-----TSCEEEEE
T ss_pred             CccccCcEEC-------CCCCEEEEECCCC--EEEEEeCCCCcEEE-Ee-eCCCCC---cceEEECC-----CCcEEEEe
Confidence            4567899999       8999888877777  78889988775433 22 133333   444 7888     78888877


Q ss_pred             cCC----CcEEEEEcccCcccccceeec--ccccCEEEEEEecCCCEEEEEeC------CCcEEEeeCCC
Q psy3599         163 SED----SCVYFLDIQSKEHKNAVNKLQ--GHACPVLGVSFNYDESLLATSDY------QGLIILWSREK  220 (223)
Q Consensus       163 s~d----g~v~iwd~~~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~s~------d~~i~iwd~~~  220 (223)
                      ..+    +.|.+||..+   +.....+.  .+...+.++.++|++.++++...      .+.|..+|..+
T Consensus       105 ~~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~  171 (333)
T 2dg1_A          105 LGDFKSTGGIFAATENG---DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF  171 (333)
T ss_dssp             CTTSSSCCEEEEECTTS---CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS
T ss_pred             CCCCCCCceEEEEeCCC---CEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC
Confidence            666    6899999887   54432222  23457899999999998877653      24566666554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.27  E-value=6.6e-05  Score=57.87  Aligned_cols=115  Identities=11%  Similarity=0.094  Sum_probs=74.4

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcc-eeEE-EeeecCcccCCCcEEEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSK-YQVR-STFCPIMSFREGACVVT  161 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~-~~i~-~~~s~~~~~~~~~~l~s  161 (223)
                      ...+.++.++       +++.++++...+.  .+.+||..++.... ... ...... ..+. .+++|     ++.++++
T Consensus        68 ~~~~~~l~~~-------~dg~l~v~~~~~~--~i~~~d~~~g~~~~-~~~-~~~~~~~~~~~~i~~d~-----~G~l~vt  131 (296)
T 3e5z_A           68 SHHQNGHCLN-------KQGHLIACSHGLR--RLERQREPGGEWES-IAD-SFEGKKLNSPNDVCLAP-----DGSLWFS  131 (296)
T ss_dssp             CSSEEEEEEC-------TTCCEEEEETTTT--EEEEECSTTCCEEE-EEC-EETTEECCCCCCEEECT-----TSCEEEE
T ss_pred             CCCcceeeEC-------CCCcEEEEecCCC--eEEEEcCCCCcEEE-Eee-ccCCCCCCCCCCEEECC-----CCCEEEE
Confidence            5678899999       8999888877666  68889987665332 111 111110 0022 35788     7888887


Q ss_pred             ----ecC-------------CCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         162 ----GSE-------------DSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       162 ----gs~-------------dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                          |+.             .+.|+.++...    + +..+..+......++|+|++..+++.+.++.|.+||+.
T Consensus       132 d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g----~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~  201 (296)
T 3e5z_A          132 DPTYGIDKPEEGYGGEMELPGRWVFRLAPDG----T-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLN  201 (296)
T ss_dssp             ECSHHHHCGGGSSCCCCCSSSCEEEEECTTS----C-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred             CCccccccccccccccccCCCcEEEEECCCC----C-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEEC
Confidence                431             23444444322    2 33334455667899999999988777778999999986

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.25  E-value=5.8e-05  Score=65.68  Aligned_cols=120  Identities=10%  Similarity=0.024  Sum_probs=74.6

Q ss_pred             eeEEEEeecccccCCCCeEEEEEeCCC--------------eEEEEEecCCCceEEe-eeee-ccccCcceeEEEeeecC
Q psy3599          87 ITCLSWRSWISREARDPTLLVNIAANA--------------VCILKVLDKEGAVQLK-RKFN-VNHKSSKYQVRSTFCPI  150 (223)
Q Consensus        87 i~~l~~~~~~~~~~~~~~~l~~~~~~~--------------~~~v~i~d~~~~~~~~-~~~~-~~h~~~~~~i~~~~s~~  150 (223)
                      +..++|+       |||+.|+.++.+.              ...+.+|++.++.... ..+. ..|....  ....|+| 
T Consensus       173 ~~~~~ws-------pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~--~~~~~Sp-  242 (710)
T 2xdw_A          173 FSCMAWT-------HDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWM--GGAELSD-  242 (710)
T ss_dssp             SCCEEEC-------TTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCE--EEEEECT-
T ss_pred             cceEEEE-------eCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEE--EEEEEcC-
Confidence            5678999       9999888777543              1237788887654110 1111 1233332  3447999 


Q ss_pred             cccCCCcEEEEecC-----CCcEEEEEcccCc----ccccceeecccccCEEEEEEecCCCEEEEEeCC----CcEEEee
Q psy3599         151 MSFREGACVVTGSE-----DSCVYFLDIQSKE----HKNAVNKLQGHACPVLGVSFNYDESLLATSDYQ----GLIILWS  217 (223)
Q Consensus       151 ~~~~~~~~l~sgs~-----dg~v~iwd~~~~~----~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d----~~i~iwd  217 (223)
                          ++.+|+.++.     +..|++||+.+..    ....+..+..+...+.. .|+|+|..|+..+..    +.|.+||
T Consensus       243 ----Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d  317 (710)
T 2xdw_A          243 ----DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINID  317 (710)
T ss_dssp             ----TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEE
T ss_pred             ----CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEe
Confidence                7888877664     5689999987500    01135555556665554 488888877766543    3599999


Q ss_pred             CCCC
Q psy3599         218 REKH  221 (223)
Q Consensus       218 ~~~~  221 (223)
                      +.++
T Consensus       318 ~~~~  321 (710)
T 2xdw_A          318 FTDP  321 (710)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            8765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.24  E-value=8.3e-05  Score=56.25  Aligned_cols=116  Identities=13%  Similarity=0.044  Sum_probs=78.3

Q ss_pred             CCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecC
Q psy3599          85 CPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE  164 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~  164 (223)
                      ..+..+.++       +++.++++...++  .+.+++..+.......  ......+  ...++++     ++.++++...
T Consensus       108 ~~p~~i~~~-------~~g~l~v~~~~~~--~i~~~~~~~~~~~~~~--~~~~~~p--~~i~~~~-----~g~l~v~~~~  169 (270)
T 1rwi_B          108 NYPEGLAVD-------TQGAVYVADRGNN--RVVKLAAGSKTQTVLP--FTGLNDP--DGVAVDN-----SGNVYVTDTD  169 (270)
T ss_dssp             SSEEEEEEC-------TTCCEEEEEGGGT--EEEEECTTCCSCEECC--CCSCCSC--CCEEECT-----TCCEEEEEGG
T ss_pred             CCCcceEEC-------CCCCEEEEECCCC--EEEEEECCCceeEeec--cccCCCc--eeEEEeC-----CCCEEEEECC
Confidence            568899999       8888887766666  5666775544322211  1221221  2235777     6888888777


Q ss_pred             CCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         165 DSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       165 dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      ++.|.+||...   .........+-..+.+++++++|.++++...++.|.+||....
T Consensus       170 ~~~i~~~~~~~---~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          170 NNRVVKLEAES---NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             GTEEEEECTTT---CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred             CCEEEEEecCC---CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence            88999999877   4433332333356889999999988888877889999998653

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.19  E-value=5.9e-05  Score=60.32  Aligned_cols=65  Identities=14%  Similarity=0.267  Sum_probs=53.4

Q ss_pred             eeecCcccCCCcEEEEecC-----------CCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEE
Q psy3599         146 TFCPIMSFREGACVVTGSE-----------DSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLII  214 (223)
Q Consensus       146 ~~s~~~~~~~~~~l~sgs~-----------dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~  214 (223)
                      .|+|     ++..++....           .+.|.+||..+   .+.+..+..+.  +.+++|+|+|++|++++. ++|.
T Consensus       260 a~~~-----dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t---~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~  328 (361)
T 2oiz_A          260 GLHR-----ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT---KQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVN  328 (361)
T ss_dssp             EEET-----TTTEEEEEEESSCCTTCTTCCCSEEEEEETTT---TEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEE
T ss_pred             EEec-----CCCeEEEEEccCCCcccccCCCceEEEEECCC---CcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEE
Confidence            5777     5665555432           34799999999   88899988776  899999999999988886 9999


Q ss_pred             EeeCCCC
Q psy3599         215 LWSREKH  221 (223)
Q Consensus       215 iwd~~~~  221 (223)
                      +||..++
T Consensus       329 v~D~~t~  335 (361)
T 2oiz_A          329 VYDISQP  335 (361)
T ss_dssp             EEECSSS
T ss_pred             EEECCCC
Confidence            9999887

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.19  E-value=2.7e-05  Score=66.19  Aligned_cols=105  Identities=10%  Similarity=0.127  Sum_probs=78.3

Q ss_pred             CCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcc--cCccc
Q psy3599         102 DPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQ--SKEHK  179 (223)
Q Consensus       102 ~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~--~~~~~  179 (223)
                      .+.++++..+++  .+.++|..+++.+... ..+.  .+  -...|+|     ++.++++++.|+.|.+||+.  +   .
T Consensus       166 ~~~~~V~~~~~~--~V~viD~~t~~v~~~i-~~g~--~p--~~v~~Sp-----DGr~lyv~~~dg~V~viD~~~~t---~  230 (567)
T 1qks_A          166 ENLFSVTLRDAG--QIALIDGSTYEIKTVL-DTGY--AV--HISRLSA-----SGRYLFVIGRDGKVNMIDLWMKE---P  230 (567)
T ss_dssp             GGEEEEEETTTT--EEEEEETTTCCEEEEE-ECSS--CE--EEEEECT-----TSCEEEEEETTSEEEEEETTSSS---C
T ss_pred             CceEEEEeCCCC--eEEEEECCCCeEEEEE-eCCC--Cc--cceEECC-----CCCEEEEEcCCCeEEEEECCCCC---C
Confidence            456677777788  8999999988766543 2232  21  2226999     89999999999999999996  6   6


Q ss_pred             ccceeecccccCEEEEEEe----cCCCEEEEEe-CCCcEEEeeCCCCC
Q psy3599         180 NAVNKLQGHACPVLGVSFN----YDESLLATSD-YQGLIILWSREKHE  222 (223)
Q Consensus       180 ~~~~~~~~h~~~v~~v~~~----~~~~~l~s~s-~d~~i~iwd~~~~~  222 (223)
                      +.+..+..... ...++|+    |+|.++++++ .++.+.++|..+.+
T Consensus       231 ~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~  277 (567)
T 1qks_A          231 TTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE  277 (567)
T ss_dssp             CEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred             cEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc
Confidence            67777765433 5789999    6998877766 46999999987765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.17  E-value=6e-05  Score=65.45  Aligned_cols=143  Identities=8%  Similarity=-0.011  Sum_probs=85.6

Q ss_pred             CcEEEEEECCCCceeeee------------eeeecC--------CCCe--eEEEEeecccccCCCCeEEEEEeCCC----
Q psy3599          60 GVIVSILCDDLGRLSKGK------------RLVLSQ--------DCPI--TCLSWRSWISREARDPTLLVNIAANA----  113 (223)
Q Consensus        60 ~~i~~~~~~~~~~~~~~~------------~~~~~~--------~~~i--~~l~~~~~~~~~~~~~~~l~~~~~~~----  113 (223)
                      ..+...+|+|+|+.+...            .+....        ...+  ..+.|+       +||+.|+.++.+.    
T Consensus       121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~ws-------pDg~~l~~~~~d~~~~~  193 (695)
T 2bkl_A          121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWT-------PDSKGFYYEWLPTDPSI  193 (695)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEEC-------TTSSEEEEEECCCCTTS
T ss_pred             EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEe-------cCCCEEEEEEecCCCCC
Confidence            357788899988876511            111110        1112  678999       9999888877544    


Q ss_pred             -------eEEEEEecCCCceE---EeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCC----cEEEEEcccCccc
Q psy3599         114 -------VCILKVLDKEGAVQ---LKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDS----CVYFLDIQSKEHK  179 (223)
Q Consensus       114 -------~~~v~i~d~~~~~~---~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg----~v~iwd~~~~~~~  179 (223)
                             ...+.+|++.++..   +.... ..+....  ....|+|     ++.+|+.++.++    .|++|+...   +
T Consensus       194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~-~~~~~~~--~~~~~Sp-----DG~~l~~~~~~~~~~~~l~~~~~~~---~  262 (695)
T 2bkl_A          194 KVDERPGYTTIRYHTLGTEPSKDTVVHER-TGDPTTF--LQSDLSR-----DGKYLFVYILRGWSENDVYWKRPGE---K  262 (695)
T ss_dssp             CGGGGGGGCEEEEEETTSCGGGCEEEECC-CCCTTCE--EEEEECT-----TSCCEEEEEEETTTEEEEEEECTTC---S
T ss_pred             ccccCCCCCEEEEEECCCCchhceEEEec-CCCCEEE--EEEEECC-----CCCEEEEEEeCCCCceEEEEEcCCC---C
Confidence                   12388888876641   21111 1233332  3337999     788887777665    677776554   4


Q ss_pred             ccceeecccccCEEEEEEecCCCEEEEEe---CCCcEEEeeCCCCC
Q psy3599         180 NAVNKLQGHACPVLGVSFNYDESLLATSD---YQGLIILWSREKHE  222 (223)
Q Consensus       180 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s---~d~~i~iwd~~~~~  222 (223)
                      + ...+..+...+....+ +++.+++++.   .++.|.+||+.+++
T Consensus       263 ~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          263 D-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             S-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred             c-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence            3 3444445555666666 5555555544   35789999987653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.16  E-value=2.7e-05  Score=61.26  Aligned_cols=102  Identities=13%  Similarity=0.108  Sum_probs=68.6

Q ss_pred             CCeeEEEEeecccccCCCCeEEEEEeCC---CeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEE
Q psy3599          85 CPITCLSWRSWISREARDPTLLVNIAAN---AVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVT  161 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~~~~~~---~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~s  161 (223)
                      ..+..+.|+       |||..|+..+.+   +...+.+++..++.... ..  .+.. .  ....|+|     ++..|+.
T Consensus        59 ~~~~~~~~S-------pDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~-l~--~~~~-~--~~~~wsp-----dg~~l~~  120 (347)
T 2gop_A           59 ENATMPRIS-------PDGKKIAFMRANEEKKVSEIWVADLETLSSKK-IL--EAKN-I--RSLEWNE-----DSRKLLI  120 (347)
T ss_dssp             ESCEEEEEC-------TTSSEEEEEEEETTTTEEEEEEEETTTTEEEE-EE--EESE-E--EEEEECT-----TSSEEEE
T ss_pred             ccCCCeEEC-------CCCCEEEEEEeccCCCcceEEEEECCCCceEE-EE--cCCC-c--cceeECC-----CCCEEEE
Confidence            357789999       999988876632   33356777887775433 21  2211 2  3337999     7887777


Q ss_pred             ecCC---------------------------CcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCC
Q psy3599         162 GSED---------------------------SCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQ  210 (223)
Q Consensus       162 gs~d---------------------------g~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d  210 (223)
                      ++.+                           ..|++||+.+   ++.+..+.. . .+..+.|+|+| ++++++.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~---~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~  190 (347)
T 2gop_A          121 VGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES---EEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHR  190 (347)
T ss_dssp             EEECCCC---------CCCC---------CEEEEEEEETTT---TEEEEEEEE-E-TTCEEEEETTE-EEEEEECC
T ss_pred             EEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC---CeEEeeecC-C-CcccccCCCCe-EEEEEecc
Confidence            6632                           4689999988   665344444 3 68899999999 77777654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.14  E-value=1.7e-05  Score=64.07  Aligned_cols=112  Identities=13%  Similarity=0.156  Sum_probs=76.0

Q ss_pred             CCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceE--------EeeeeeccccCcceeEEEeeecCcccCCC
Q psy3599          85 CPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQ--------LKRKFNVNHKSSKYQVRSTFCPIMSFREG  156 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~--------~~~~~~~~h~~~~~~i~~~~s~~~~~~~~  156 (223)
                      .+++.++++       +...++++++.+++   .+|+++....        ........+.. +  ...+|       ++
T Consensus        38 ~~~nlLais-------~~~gll~a~~~~~l---~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V--~~l~f-------d~   97 (388)
T 1xip_A           38 ASLQNLDIS-------NSKSLFVAASGSKA---VVGELQLLRDHITSDSTPLTFKWEKEIPD-V--IFVCF-------HG   97 (388)
T ss_dssp             SCCBCEEEE-------TTTTEEEEEETTEE---EEEEHHHHHHHHHSSSCCCCCSEEEECTT-E--EEEEE-------ET
T ss_pred             ccccEEEEc-------CCCCEEEEeCCCEE---EEEEhhHhhhhhccccccccceEEeeCCC-e--eEEEE-------CC
Confidence            368999999       88899999988873   4465432210        00000012323 3  33356       37


Q ss_pred             cEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         157 ACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       157 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+|+.+ .++.|++||+++   .........|+..+.++.+.+.  .+++++.||.+.+||++.+.
T Consensus        98 ~~L~v~-~~~~l~v~dv~s---l~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~  157 (388)
T 1xip_A           98 DQVLVS-TRNALYSLDLEE---LSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS  157 (388)
T ss_dssp             TEEEEE-ESSEEEEEESSS---TTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC
T ss_pred             CEEEEE-cCCcEEEEEchh---hhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc
Confidence            888888 889999999988   5544556667778888776543  38888999999999998653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.13  E-value=0.00078  Score=51.35  Aligned_cols=112  Identities=11%  Similarity=0.024  Sum_probs=76.2

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEe
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTG  162 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sg  162 (223)
                      ...+..+.+.       +++.++++...+.  .+..+|. ++....... ......   ... .+.+     ++.++++.
T Consensus        98 ~~~~~~i~~~-------~~g~l~v~~~~~~--~i~~~d~-~g~~~~~~~-~~~~~~---~~~i~~~~-----~g~l~v~~  158 (299)
T 2z2n_A           98 DSAPYGITEG-------PNGDIWFTEMNGN--RIGRITD-DGKIREYEL-PNKGSY---PSFITLGS-----DNALWFTE  158 (299)
T ss_dssp             TCCEEEEEEC-------TTSCEEEEETTTT--EEEEECT-TCCEEEEEC-SSTTCC---EEEEEECT-----TSCEEEEE
T ss_pred             CCCceeeEEC-------CCCCEEEEecCCc--eEEEECC-CCCEEEecC-CCCCCC---CceEEEcC-----CCCEEEEe
Confidence            4467888888       8888888776666  6777787 443332111 122222   333 6777     68888877


Q ss_pred             cCCCcEEEEEcccCccccccee-ecccccCEEEEEEecCCCEEEEEeCCCcEEEeeC
Q psy3599         163 SEDSCVYFLDIQSKEHKNAVNK-LQGHACPVLGVSFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       163 s~dg~v~iwd~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      ..++.|..||. +   ++.... +..+...+.++++++++.+.++...++.|..||.
T Consensus       159 ~~~~~i~~~~~-~---g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          159 NQNNAIGRITE-S---GDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT  211 (299)
T ss_dssp             TTTTEEEEECT-T---CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             CCCCEEEEEcC-C---CcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence            77889999998 5   443322 3333456889999999998877767888999987

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.12  E-value=0.00092  Score=50.94  Aligned_cols=113  Identities=16%  Similarity=0.127  Sum_probs=75.7

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS  163 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs  163 (223)
                      ...+.++.++       +++.++++...++  .+..|+.... ...... ......+  ....+.+     ++.++++..
T Consensus        56 ~~~~~~i~~~-------~~g~l~v~~~~~~--~i~~~~~~g~-~~~~~~-~~~~~~~--~~i~~~~-----~g~l~v~~~  117 (299)
T 2z2n_A           56 DAKVMCLTIS-------SDGEVWFTENAAN--KIGRITKKGI-IKEYTL-PNPDSAP--YGITEGP-----NGDIWFTEM  117 (299)
T ss_dssp             TCCEEEEEEC-------TTSCEEEEETTTT--EEEEECTTSC-EEEEEC-SSTTCCE--EEEEECT-----TSCEEEEET
T ss_pred             cCceeeEEEC-------CCCCEEEeCCCCC--eEEEECCCCc-EEEEeC-CCcCCCc--eeeEECC-----CCCEEEEec
Confidence            4578889998       8888888776566  5677787632 211111 1122222  3336777     688888877


Q ss_pred             CCCcEEEEEcccCcccccce-eecccccCEEEEEEecCCCEEEEEeCCCcEEEeeC
Q psy3599         164 EDSCVYFLDIQSKEHKNAVN-KLQGHACPVLGVSFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       164 ~dg~v~iwd~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      .++.|..||. .   ++... ....+...+..+++.+++.++++...++.|..||.
T Consensus       118 ~~~~i~~~d~-~---g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  169 (299)
T 2z2n_A          118 NGNRIGRITD-D---GKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE  169 (299)
T ss_dssp             TTTEEEEECT-T---CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             CCceEEEECC-C---CCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC
Confidence            7889999998 4   33222 22334456899999999998887777788999987

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.10  E-value=5e-06  Score=66.50  Aligned_cols=116  Identities=9%  Similarity=-0.083  Sum_probs=74.3

Q ss_pred             eeEEEEeecccccCCCCeEEEEEeCC-CeEEEEEecCCCceEEeeeeeccccCcceeEE-EeeecCcccCCCcEEEEecC
Q psy3599          87 ITCLSWRSWISREARDPTLLVNIAAN-AVCILKVLDKEGAVQLKRKFNVNHKSSKYQVR-STFCPIMSFREGACVVTGSE  164 (223)
Q Consensus        87 i~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~-~~~s~~~~~~~~~~l~sgs~  164 (223)
                      +..++|+       |+|++|+..... +...+.++|..++..... .  .+....  .. ..|+|     ++..|+..+.
T Consensus        38 ~~~~~~S-------pdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-~--~~~~~~--~~~~~~sp-----dg~~l~~~~~  100 (396)
T 3c5m_A           38 FYQKCFT-------QDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-T--EGKGDN--TFGGFIST-----DERAFFYVKN  100 (396)
T ss_dssp             TTSCCBC-------TTSCEEEEEECTTSSCEEEEEETTTTEEEEC-C--CSSCBC--TTTCEECT-----TSSEEEEEET
T ss_pred             eecCcCC-------CCCCEEEEEEecCCCceEEEEECCCCcEEEe-e--cCCCCc--cccceECC-----CCCEEEEEEc
Confidence            6788999       999988766532 222567788887754332 1  222221  22 25899     8999999999


Q ss_pred             CCcEEEEEcccCcccccceeecccccCEEE-------------------EEEecCCCEEEEE-----eCCCcEEEeeCCC
Q psy3599         165 DSCVYFLDIQSKEHKNAVNKLQGHACPVLG-------------------VSFNYDESLLATS-----DYQGLIILWSREK  220 (223)
Q Consensus       165 dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~-------------------v~~~~~~~~l~s~-----s~d~~i~iwd~~~  220 (223)
                      ++.|++||+.+   ++.......+......                   +.|+|++..++.+     ..+..|.+||+.+
T Consensus       101 ~~~l~~~d~~~---~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~  177 (396)
T 3c5m_A          101 ELNLMKVDLET---LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIET  177 (396)
T ss_dssp             TTEEEEEETTT---CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTT
T ss_pred             CCcEEEEECCC---CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCC
Confidence            98999999988   6544444433332222                   3456666655543     3566789999877


Q ss_pred             CC
Q psy3599         221 HE  222 (223)
Q Consensus       221 ~~  222 (223)
                      ++
T Consensus       178 g~  179 (396)
T 3c5m_A          178 GE  179 (396)
T ss_dssp             CC
T ss_pred             Cc
Confidence            64

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.04  E-value=0.00026  Score=54.48  Aligned_cols=113  Identities=9%  Similarity=0.008  Sum_probs=73.7

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCC-CceE-E-eeeeeccccCcceeEEEeeecCcccCCCcEEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKE-GAVQ-L-KRKFNVNHKSSKYQVRSTFCPIMSFREGACVV  160 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~-~~~~-~-~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~  160 (223)
                      ......++|+       +++.+|++.+.+.  .+.+|+.. ++.. . ...+ ..+...+  -..++.+     ++.+++
T Consensus       171 ~~~~~gi~~s-------~dg~~lv~~~~~~--~i~~~~~~~~g~~~~~~~~~-~~~~~~p--~~i~~d~-----~G~l~v  233 (296)
T 3e5z_A          171 RVKPNGLAFL-------PSGNLLVSDTGDN--ATHRYCLNARGETEYQGVHF-TVEPGKT--DGLRVDA-----GGLIWA  233 (296)
T ss_dssp             CSSEEEEEEC-------TTSCEEEEETTTT--EEEEEEECSSSCEEEEEEEE-CCSSSCC--CSEEEBT-----TSCEEE
T ss_pred             CCCCccEEEC-------CCCCEEEEeCCCC--eEEEEEECCCCcCcCCCeEe-eCCCCCC--CeEEECC-----CCCEEE
Confidence            3456789999       9998886666666  67788875 3432 1 1122 1222222  1225777     688777


Q ss_pred             EecCCCcEEEEEcccCcccccceeecccccCEEEEEE-ecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         161 TGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSF-NYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       161 sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~-~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      +.  ++.|.+||...    +.+..+..+.. +.+++| .|++..|..++.++ +.-++.++.
T Consensus       234 ~~--~~~v~~~~~~g----~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~  287 (296)
T 3e5z_A          234 SA--GDGVHVLTPDG----DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR  287 (296)
T ss_dssp             EE--TTEEEEECTTS----CEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred             Ec--CCeEEEECCCC----CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence            66  78899999754    56667766666 889999 58888888887654 444455543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.98  E-value=0.00024  Score=60.34  Aligned_cols=117  Identities=7%  Similarity=0.048  Sum_probs=78.3

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCC--CceEEeeeeeccccCcceeEEEeee----cCcccCCCc
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKE--GAVQLKRKFNVNHKSSKYQVRSTFC----PIMSFREGA  157 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~--~~~~~~~~~~~~h~~~~~~i~~~~s----~~~~~~~~~  157 (223)
                      +..+..+.|+       +|++++.+++.++  .+.++|+.  ++..+... ..+.  .+  ....|+    |     +++
T Consensus       196 g~~p~~v~~S-------pDGr~lyv~~~dg--~V~viD~~~~t~~~v~~i-~~G~--~P--~~ia~s~~~~p-----DGk  256 (567)
T 1qks_A          196 GYAVHISRLS-------ASGRYLFVIGRDG--KVNMIDLWMKEPTTVAEI-KIGS--EA--RSIETSKMEGW-----EDK  256 (567)
T ss_dssp             SSCEEEEEEC-------TTSCEEEEEETTS--EEEEEETTSSSCCEEEEE-ECCS--EE--EEEEECCSTTC-----TTT
T ss_pred             CCCccceEEC-------CCCCEEEEEcCCC--eEEEEECCCCCCcEeEEE-ecCC--CC--ceeEEccccCC-----CCC
Confidence            4567799999       9999999888888  78889985  66555432 2222  22  444788    6     687


Q ss_pred             EEEEecC-CCcEEEEEcccCcccccceeecc----------c--------------------------------------
Q psy3599         158 CVVTGSE-DSCVYFLDIQSKEHKNAVNKLQG----------H--------------------------------------  188 (223)
Q Consensus       158 ~l~sgs~-dg~v~iwd~~~~~~~~~~~~~~~----------h--------------------------------------  188 (223)
                      +++.++. ++.+.++|..+   .+.+..+..          |                                      
T Consensus       257 ~l~v~n~~~~~v~ViD~~t---~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~  333 (567)
T 1qks_A          257 YAIAGAYWPPQYVIMDGET---LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL  333 (567)
T ss_dssp             EEEEEEEETTEEEEEETTT---CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE
T ss_pred             EEEEEEccCCeEEEEECCC---CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccc
Confidence            7776665 58899999877   555443321          0                                      


Q ss_pred             -------ccCEEEEEEecCCCEEEEEe-CCCcEEEeeCCCCC
Q psy3599         189 -------ACPVLGVSFNYDESLLATSD-YQGLIILWSREKHE  222 (223)
Q Consensus       189 -------~~~v~~v~~~~~~~~l~s~s-~d~~i~iwd~~~~~  222 (223)
                             .....++.|+|++.++++++ .++.|.++|+.+++
T Consensus       334 ~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k  375 (567)
T 1qks_A          334 KTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK  375 (567)
T ss_dssp             EEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             eeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence                   01223567888888766554 57888899987754

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=97.96  E-value=0.00013  Score=58.28  Aligned_cols=72  Identities=18%  Similarity=0.188  Sum_probs=57.1

Q ss_pred             EEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCccc--ccceeecccccCEE
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHK--NAVNKLQGHACPVL  193 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~--~~~~~~~~h~~~v~  193 (223)
                      .+.+||..+++.+... . .+.  +  ....|+|     ++++|++++. +.|.+||..+   +  +.+..+..+.....
T Consensus       287 ~v~viD~~t~~~v~~i-~-~~~--p--~~ia~sp-----dg~~l~v~n~-~~v~v~D~~t---~~l~~~~~i~~~G~~P~  351 (361)
T 2oiz_A          287 EIWVMDTKTKQRVARI-P-GRD--A--LSMTIDQ-----QRNLMLTLDG-GNVNVYDISQ---PEPKLLRTIEGAAEASL  351 (361)
T ss_dssp             EEEEEETTTTEEEEEE-E-CTT--C--CEEEEET-----TTTEEEEECS-SCEEEEECSS---SSCEEEEEETTSCSSEE
T ss_pred             eEEEEECCCCcEEEEE-e-cCC--e--eEEEECC-----CCCEEEEeCC-CeEEEEECCC---CcceeeEEeccCCCCcE
Confidence            6889999999776643 3 333  3  5557999     7888888886 9999999999   8  88888766666778


Q ss_pred             EEEEecCCC
Q psy3599         194 GVSFNYDES  202 (223)
Q Consensus       194 ~v~~~~~~~  202 (223)
                      .+.++|+|.
T Consensus       352 ~~~~~p~G~  360 (361)
T 2oiz_A          352 QVQFHPVGG  360 (361)
T ss_dssp             EEEECCCSC
T ss_pred             EEEecCCCC
Confidence            899999875

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.96  E-value=5.9e-05  Score=60.17  Aligned_cols=117  Identities=9%  Similarity=0.111  Sum_probs=71.0

Q ss_pred             CCCeeEEEEeecccccCC-CCeEEEEEeCCCe----EEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCc
Q psy3599          84 DCPITCLSWRSWISREAR-DPTLLVNIAANAV----CILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGA  157 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~-~~~~l~~~~~~~~----~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~  157 (223)
                      ...+..+.|+       | ++..|+..+.+..    ..+.+++..++.. ...  ..+... ..+.. .|+|     ++.
T Consensus       187 ~~~~~~~~~s-------p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l--~~~~~~-~~~~~~~~sp-----dg~  250 (396)
T 3c5m_A          187 TAWLGHPIYR-------PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKI--KEHAEG-ESCTHEFWIP-----DGS  250 (396)
T ss_dssp             SSCEEEEEEE-------TTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EES--SCCCTT-EEEEEEEECT-----TSS
T ss_pred             CcccccceEC-------CCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEe--eccCCC-ccccceEECC-----CCC
Confidence            5567889999       7 7887776554321    1456677765532 222  122211 11444 7999     788


Q ss_pred             EEEEecCC-----CcEEEEEcccCcccccceeecccccCEEEEEEec-CCCEEEEEe----------------CCCcEEE
Q psy3599         158 CVVTGSED-----SCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNY-DESLLATSD----------------YQGLIIL  215 (223)
Q Consensus       158 ~l~sgs~d-----g~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s----------------~d~~i~i  215 (223)
                      .|+..+.+     +.|++||+.+   ++...... ... .. +.|+| ++..+++++                .+..|.+
T Consensus       251 ~l~~~~~~~~~~~~~l~~~d~~~---g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~  324 (396)
T 3c5m_A          251 AMAYVSYFKGQTDRVIYKANPET---LENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYV  324 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEECTTT---CCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEE
T ss_pred             EEEEEecCCCCccceEEEEECCC---CCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEE
Confidence            66665443     4499999987   54322211 111 23 88999 999888754                3478999


Q ss_pred             eeCCCCC
Q psy3599         216 WSREKHE  222 (223)
Q Consensus       216 wd~~~~~  222 (223)
                      ||+.+++
T Consensus       325 ~d~~~~~  331 (396)
T 3c5m_A          325 LNTKAKS  331 (396)
T ss_dssp             EETTTTB
T ss_pred             EecccCc
Confidence            9987654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.91  E-value=0.00037  Score=54.75  Aligned_cols=115  Identities=11%  Similarity=0.094  Sum_probs=76.9

Q ss_pred             CCeeEEEEeecccccCCCCeEEEEEeCC----------CeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccC
Q psy3599          85 CPITCLSWRSWISREARDPTLLVNIAAN----------AVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFR  154 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~~~~~~----------~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~  154 (223)
                      .....+.++       +++++++++..+          .  .+.++|..+++.... +.......+  ...+++|     
T Consensus       172 ~~p~~i~~~-------~dG~l~v~~~~~~~~~~~~~~~~--~v~~id~~t~~v~~~-~~~~~g~~p--~~la~~~-----  234 (328)
T 3dsm_A          172 IQPTSLVMD-------KYNKMWTITDGGYEGSPYGYEAP--SLYRIDAETFTVEKQ-FKFKLGDWP--SEVQLNG-----  234 (328)
T ss_dssp             SCBCCCEEC-------TTSEEEEEBCCBCTTCSSCBCCC--EEEEEETTTTEEEEE-EECCTTCCC--EEEEECT-----
T ss_pred             CCccceEEc-------CCCCEEEEECCCccCCccccCCc--eEEEEECCCCeEEEE-EecCCCCCc--eeEEEec-----
Confidence            345678888       889988776643          5  678889888865543 221111222  4447898     


Q ss_pred             CCcEEEEecCCCcEEEEEcccCcccccce--eecccccCEEEEEEec-CCCEEEEE----eCCCcEEEeeCCCCC
Q psy3599         155 EGACVVTGSEDSCVYFLDIQSKEHKNAVN--KLQGHACPVLGVSFNY-DESLLATS----DYQGLIILWSREKHE  222 (223)
Q Consensus       155 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~--~~~~h~~~v~~v~~~~-~~~~l~s~----s~d~~i~iwd~~~~~  222 (223)
                      ++..++.+..  .|++||..+   ++...  .+.........++++| ++.++++.    ..++.|.+||.. ++
T Consensus       235 d~~~lyv~~~--~v~~~d~~t---~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~  303 (328)
T 3dsm_A          235 TRDTLYWINN--DIWRMPVEA---DRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK  303 (328)
T ss_dssp             TSCEEEEESS--SEEEEETTC---SSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred             CCCEEEEEcc--EEEEEECCC---CceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence            6777776654  899999987   55432  1222235678999999 56777776    678899999987 43

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.90  E-value=0.0039  Score=47.39  Aligned_cols=113  Identities=13%  Similarity=0.023  Sum_probs=75.5

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEe
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTG  162 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sg  162 (223)
                      ...+..+.+.       +++.++++...++  .+..+|.. +........ .....   ... .+.+     ++.++++.
T Consensus        61 ~~~~~~i~~~-------~~g~l~v~~~~~~--~v~~~d~~-g~~~~~~~~-~~~~~---~~~i~~~~-----~g~l~v~~  121 (300)
T 2qc5_A           61 DAKVMCLIVS-------SLGDIWFTENGAN--KIGKLSKK-GGFTEYPLP-QPDSG---PYGITEGL-----NGDIWFTQ  121 (300)
T ss_dssp             TCCEEEEEEC-------TTSCEEEEETTTT--EEEEECTT-SCEEEEECS-STTCC---EEEEEECS-----TTCEEEEE
T ss_pred             CCcceeEEEC-------CCCCEEEEecCCC--eEEEECCC-CCeEEecCC-CCCCC---CccceECC-----CCCEEEEc
Confidence            3578889998       8888888776566  67778877 433221111 12222   333 6777     68888887


Q ss_pred             cCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeC
Q psy3599         163 SEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       163 s~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      ..++.|..+|...   ......+......+.++.+.+++++.++...++.|..||.
T Consensus       122 ~~~~~i~~~~~~g---~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  174 (300)
T 2qc5_A          122 LNGDRIGKLTADG---TIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN  174 (300)
T ss_dssp             TTTTEEEEECTTS---CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             cCCCeEEEECCCC---CEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC
Confidence            7788899988764   2222223333456889999999997777766788998887

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.89  E-value=0.0023  Score=49.21  Aligned_cols=107  Identities=10%  Similarity=0.060  Sum_probs=69.6

Q ss_pred             CCCeEE-EEEeCCCeEEEEEecCC-CceE----Eeeeeecccc-CcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEc
Q psy3599         101 RDPTLL-VNIAANAVCILKVLDKE-GAVQ----LKRKFNVNHK-SSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDI  173 (223)
Q Consensus       101 ~~~~~l-~~~~~~~~~~v~i~d~~-~~~~----~~~~~~~~h~-~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~  173 (223)
                      +++..| ++...+.  .+.+|+.. ++..    ....+. ++. ..+  ...++++     ++.++++...++.|.+||.
T Consensus       185 ~dg~~l~v~~~~~~--~i~~~~~~~~g~~~~~~~~~~~~-~~~~~~p--~~i~~d~-----~G~l~v~~~~~~~i~~~d~  254 (314)
T 1pjx_A          185 GRPYQLIVAETPTK--KLWSYDIKGPAKIENKKVWGHIP-GTHEGGA--DGMDFDE-----DNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             SCEEEEEEEETTTT--EEEEEEEEETTEEEEEEEEEECC-CCSSCEE--EEEEEBT-----TCCEEEEEETTTEEEEECT
T ss_pred             CCCCEEEEEECCCC--eEEEEECCCCCccccceEEEECC-CCCCCCC--CceEECC-----CCCEEEEEcCCCEEEEEcC
Confidence            456444 4444555  56777765 3321    111111 221 221  3336777     7888888777889999999


Q ss_pred             ccCcccccceeecccccCEEEEEEecCCC-EEEEEeCCCcEEEeeCCC
Q psy3599         174 QSKEHKNAVNKLQGHACPVLGVSFNYDES-LLATSDYQGLIILWSREK  220 (223)
Q Consensus       174 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~d~~i~iwd~~~  220 (223)
                      .+   ++.+..+..+...+.+++++|+++ ++++...++.|..|++..
T Consensus       255 ~~---g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          255 DG---GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TC---BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CC---CcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            87   666666666667899999999998 555555678899999764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.85  E-value=0.00024  Score=61.74  Aligned_cols=119  Identities=16%  Similarity=0.165  Sum_probs=76.0

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeC-CC--eEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAA-NA--VCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVV  160 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~-~~--~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~  160 (223)
                      ...+..+.||       |||++|+-+.+ ++  ...++++|+.+++.+...+. +...    ....|+ .     ++.|+
T Consensus       128 ~~~l~~~~~S-------pDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~k~----~~~~Ws-D-----g~~l~  189 (693)
T 3iuj_A          128 TTALDQLSFS-------RDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK-DVKF----SGISWL-G-----NEGFF  189 (693)
T ss_dssp             CCEEEEEEEC-------TTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE-EEES----CCCEEE-T-----TTEEE
T ss_pred             cEEEEEEEEC-------CCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC-Ccee----ccEEEe-C-----CCEEE
Confidence            3468889999       99998885432 22  24789999999876543221 1100    011466 4     66666


Q ss_pred             EecCCC-------------cEEEEEcccCccc--ccceeecc-cccCEEEEEEecCCCEEEEEe----CCCcEEEeeCCC
Q psy3599         161 TGSEDS-------------CVYFLDIQSKEHK--NAVNKLQG-HACPVLGVSFNYDESLLATSD----YQGLIILWSREK  220 (223)
Q Consensus       161 sgs~dg-------------~v~iwd~~~~~~~--~~~~~~~~-h~~~v~~v~~~~~~~~l~s~s----~d~~i~iwd~~~  220 (223)
                      .++.+.             .|++|++.+.. .  .++..... |......+.|+|+|..|+...    .+..|+++|+.+
T Consensus       190 y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~-~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~  268 (693)
T 3iuj_A          190 YSSYDKPDGSELSARTDQHKVYFHRLGTAQ-EDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQ  268 (693)
T ss_dssp             EEESSCCC-------CCCCEEEEEETTSCG-GGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTS
T ss_pred             EEEecCcccccccccCCCcEEEEEECCCCc-ccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCC
Confidence            666663             39999988711 1  23444444 556678899999999775443    235799999876


Q ss_pred             C
Q psy3599         221 H  221 (223)
Q Consensus       221 ~  221 (223)
                      +
T Consensus       269 ~  269 (693)
T 3iuj_A          269 E  269 (693)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.81  E-value=0.00087  Score=51.65  Aligned_cols=115  Identities=10%  Similarity=0.098  Sum_probs=73.9

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeCC---------------CeEEEEEecCCCceEEeeeeeccccCcceeEEEeee--
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAAN---------------AVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFC--  148 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~~---------------~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s--  148 (223)
                      .+.++.++       +++.++++...+               .  .+..++.. +.... ..  .+....  -..+++  
T Consensus       118 ~~~~i~~d-------~~g~l~v~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~-g~~~~-~~--~~~~~~--~~i~~~~~  182 (314)
T 1pjx_A          118 GCNDCAFD-------YEGNLWITAPAGEVAPADYTRSMQEKFG--SIYCFTTD-GQMIQ-VD--TAFQFP--NGIAVRHM  182 (314)
T ss_dssp             CCCEEEEC-------TTSCEEEEECBCBCTTSCCCBTTSSSCE--EEEEECTT-SCEEE-EE--EEESSE--EEEEEEEC
T ss_pred             CCcCEEEC-------CCCCEEEEecCcccccccccccccCCCC--eEEEECCC-CCEEE-ec--cCCCCc--ceEEEecc
Confidence            47889998       888888776643               3  45556665 43222 11  222221  222677  


Q ss_pred             --cCcccCCCc-EEEEecCCCcEEEEEcccCcccc-----cceeecccc-cCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         149 --PIMSFREGA-CVVTGSEDSCVYFLDIQSKEHKN-----AVNKLQGHA-CPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       149 --~~~~~~~~~-~l~sgs~dg~v~iwd~~~~~~~~-----~~~~~~~h~-~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                        |     ++. ++++...++.|.+||....  +.     ....+..+. ..+..++++++|+++++...++.|..||..
T Consensus       183 ~d~-----dg~~l~v~~~~~~~i~~~~~~~~--g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~  255 (314)
T 1pjx_A          183 NDG-----RPYQLIVAETPTKKLWSYDIKGP--AKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             TTS-----CEEEEEEEETTTTEEEEEEEEET--TEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             cCC-----CCCEEEEEECCCCeEEEEECCCC--CccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence              7     665 4555567889999997620  22     233344443 557889999999998888788899999987


Q ss_pred             CCC
Q psy3599         220 KHE  222 (223)
Q Consensus       220 ~~~  222 (223)
                      +++
T Consensus       256 ~g~  258 (314)
T 1pjx_A          256 GGQ  258 (314)
T ss_dssp             CBS
T ss_pred             CCc
Confidence            543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.81  E-value=0.00066  Score=55.20  Aligned_cols=114  Identities=10%  Similarity=0.011  Sum_probs=76.8

Q ss_pred             CCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecC
Q psy3599          85 CPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE  164 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~  164 (223)
                      .....++|+       +++.++++...+.  .++.||..++.... ... . ....  . .+|+|     ++..|+.+..
T Consensus       131 ~~P~~la~d-------~~g~lyv~d~~~~--~I~~id~~~g~~~~-~~~-~-~~~~--~-ia~~~-----~g~~l~~~d~  190 (409)
T 3hrp_A          131 KYMWGIAAV-------GNNTVLAYQRDDP--RVRLISVDDNKVTT-VHP-G-FKGG--K-PAVTK-----DKQRVYSIGW  190 (409)
T ss_dssp             CCEEEEEEC-------STTEEEEEETTTT--EEEEEETTTTEEEE-EEE-T-CCBC--B-CEECT-----TSSEEEEEBS
T ss_pred             CCceEEEEe-------CCCCEEEEecCCC--cEEEEECCCCEEEE-eec-c-CCCC--c-eeEec-----CCCcEEEEec
Confidence            467789999       8999888877777  78899998775432 221 2 1221  2 46888     6888888777


Q ss_pred             CC--cEEEEEcccCcccccceee---cc-cccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         165 DS--CVYFLDIQSKEHKNAVNKL---QG-HACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       165 dg--~v~iwd~~~~~~~~~~~~~---~~-h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      ++  .|++++...   ......+   .. ....+.+++++|++..|..+..++.|+.||..++
T Consensus       191 ~~~~~I~~~d~~~---~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~  250 (409)
T 3hrp_A          191 EGTHTVYVYMKAS---GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQ  250 (409)
T ss_dssp             STTCEEEEEEGGG---TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTC
T ss_pred             CCCceEEEEEcCC---CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCC
Confidence            65  788888776   4332333   12 3455788999995444444667889999998754

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.80  E-value=2.1e-06  Score=69.00  Aligned_cols=134  Identities=13%  Similarity=0.152  Sum_probs=60.5

Q ss_pred             cCCcEEEEEECC-CCceeeeeeeeecCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccc
Q psy3599          58 STGVIVSILCDD-LGRLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNH  136 (223)
Q Consensus        58 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h  136 (223)
                      .++.|.  .+|. +|+.+-..    . ..++.+..+.       .++.++++++.++  .+..||..+++.+... . .+
T Consensus        17 ~dg~v~--a~d~~tG~~~W~~----~-~~~~~s~p~~-------~~g~~~v~~s~dg--~l~a~d~~tG~~~w~~-~-~~   78 (369)
T 2hz6_A           17 LDGSLH--AVSKRTGSIKWTL----K-EDPVLQVPTH-------VEEPAFLPDPNDG--SLYTLGSKNNEGLTKL-P-FT   78 (369)
T ss_dssp             TTSEEE--EEETTTCCEEEEE----E-CCCSCCCC------------CCEEECTTTC--CEEEC-----CCSEEC-S-CC
T ss_pred             CCCEEE--EEECCCCCEEEEe----c-CCCceecceE-------cCCCEEEEeCCCC--EEEEEECCCCceeeee-e-cc
Confidence            346566  4443 66655322    1 1344444444       5666777767777  6888998877654432 1 22


Q ss_pred             cCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEe
Q psy3599         137 KSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILW  216 (223)
Q Consensus       137 ~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iw  216 (223)
                      ....  +.  .+|..  ..+..+++|+.|+.++.||..+   ++.+..+..+.    ...++|++..+++++.|+.|+.|
T Consensus        79 ~~~~--~~--~sp~~--~~~~~v~~g~~dg~v~a~D~~t---G~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~  145 (369)
T 2hz6_A           79 IPEL--VQ--ASPCR--SSDGILYMGKKQDIWYVIDLLT---GEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMY  145 (369)
T ss_dssp             HHHH--HT--TCSCC-------CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEECC
T ss_pred             Cccc--cc--cCceE--ecCCEEEEEeCCCEEEEEECCC---CcEEEEecCCC----cccccccCCEEEEEecCCEEEEE
Confidence            1111  11  12210  0355778888999999999999   88877776543    23456788889999999999999


Q ss_pred             eCCCCC
Q psy3599         217 SREKHE  222 (223)
Q Consensus       217 d~~~~~  222 (223)
                      |.++++
T Consensus       146 d~~tG~  151 (369)
T 2hz6_A          146 DTKTRE  151 (369)
T ss_dssp             CSSSSS
T ss_pred             ECCCCC
Confidence            998876

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.79  E-value=0.0006  Score=59.64  Aligned_cols=115  Identities=11%  Similarity=0.012  Sum_probs=69.0

Q ss_pred             eEEEEeecccccCCCCeEEEEEeCCC------------eEEEEEecCCCceEEe-eeee-ccccCcceeEEEeeecCccc
Q psy3599          88 TCLSWRSWISREARDPTLLVNIAANA------------VCILKVLDKEGAVQLK-RKFN-VNHKSSKYQVRSTFCPIMSF  153 (223)
Q Consensus        88 ~~l~~~~~~~~~~~~~~~l~~~~~~~------------~~~v~i~d~~~~~~~~-~~~~-~~h~~~~~~i~~~~s~~~~~  153 (223)
                      ..+.|+       +| +.|+.++.+.            ...+.+|++.++.... ..+. ..+....  ....|+|    
T Consensus       212 ~~~~ws-------pD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~--~~~~~Sp----  277 (741)
T 1yr2_A          212 SGLAWL-------GN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRG--HGASVSS----  277 (741)
T ss_dssp             CCCEES-------TT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCE--EEEEECT----
T ss_pred             ccEEEE-------CC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEE--EEEEECC----
Confidence            467788       88 7777665432            1146778876553110 1111 1222222  3447999    


Q ss_pred             CCCcEEEEecCCC-----cEEEEEcccCccc--ccceeecccccCEEEEEEecCCCEEEEEeC----CCcEEEeeCCCC
Q psy3599         154 REGACVVTGSEDS-----CVYFLDIQSKEHK--NAVNKLQGHACPVLGVSFNYDESLLATSDY----QGLIILWSREKH  221 (223)
Q Consensus       154 ~~~~~l~sgs~dg-----~v~iwd~~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~----d~~i~iwd~~~~  221 (223)
                       ++.+|+..+.++     .|++||+.+   +  ++...+..+...+.... +|++..|+..+.    ++.|.+||+.++
T Consensus       278 -DG~~l~~~~~~~~~~~~~l~~~d~~~---~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~  351 (741)
T 1yr2_A          278 -DGRWVVITSSEGTDPVNTVHVARVTN---GKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGS  351 (741)
T ss_dssp             -TSCEEEEEEECTTCSCCEEEEEEEET---TEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred             -CCCEEEEEEEccCCCcceEEEEECCC---CCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence             788887766543     799999987   5  32455555555555543 488888877764    345999998763

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.79  E-value=0.00057  Score=53.72  Aligned_cols=117  Identities=8%  Similarity=-0.024  Sum_probs=79.2

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeecccc----CcceeEEEeeecCcccCCCcEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHK----SSKYQVRSTFCPIMSFREGACV  159 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~----~~~~~i~~~~s~~~~~~~~~~l  159 (223)
                      ......++++       +++.++++...++  .+.++|..++..... +..+..    ..+  ...++ .     ++.++
T Consensus        83 ~~~p~~i~~~-------~~g~lyv~~~~~~--~v~~iD~~t~~~~~~-i~~g~~~~~~~~p--~~i~~-~-----~~~ly  144 (328)
T 3dsm_A           83 FTSPRYIHFL-------SDEKAYVTQIWDY--RIFIINPKTYEITGY-IECPDMDMESGST--EQMVQ-Y-----GKYVY  144 (328)
T ss_dssp             CSSEEEEEEE-------ETTEEEEEEBSCS--EEEEEETTTTEEEEE-EECTTCCTTTCBC--CCEEE-E-----TTEEE
T ss_pred             CCCCcEEEEe-------CCCeEEEEECCCC--eEEEEECCCCeEEEE-EEcCCccccCCCc--ceEEE-E-----CCEEE
Confidence            5678899998       7787666664666  788899998865543 222320    021  11233 2     46666


Q ss_pred             EEec-CCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCC----------CcEEEeeCCCCC
Q psy3599         160 VTGS-EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQ----------GLIILWSREKHE  222 (223)
Q Consensus       160 ~sgs-~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d----------~~i~iwd~~~~~  222 (223)
                      ++.. .++.|.++|..+   ++.+..+... .....+.++|+|.+++++..+          +.|.++|..+++
T Consensus       145 v~~~~~~~~v~viD~~t---~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~  214 (328)
T 3dsm_A          145 VNCWSYQNRILKIDTET---DKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT  214 (328)
T ss_dssp             EEECTTCCEEEEEETTT---TEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE
T ss_pred             EEcCCCCCEEEEEECCC---CeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe
Confidence            6654 488999999998   7777666543 235678899999987777654          789999987653

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.75  E-value=0.0015  Score=50.39  Aligned_cols=115  Identities=13%  Similarity=0.036  Sum_probs=70.9

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeCC----------CeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCC
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAAN----------AVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFRE  155 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~~----------~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~  155 (223)
                      .+.++.++       ++|.++++....          .. .+..++.. +.. ....  ......  -..+|+|     +
T Consensus        99 ~~~di~~d-------~dG~l~~~~~~~~~~~~~~~~~~~-~l~~~d~~-g~~-~~~~--~~~~~p--ngi~~sp-----d  159 (297)
T 3g4e_A           99 RFNDGKVD-------PAGRYFAGTMAEETAPAVLERHQG-ALYSLFPD-HHV-KKYF--DQVDIS--NGLDWSL-----D  159 (297)
T ss_dssp             EEEEEEEC-------TTSCEEEEEEECCSBTTBCCTTCE-EEEEECTT-SCE-EEEE--EEESBE--EEEEECT-----T
T ss_pred             CCCCEEEC-------CCCCEEEecCCcccccccccCCCc-EEEEEECC-CCE-EEEe--eccccc--cceEEcC-----C
Confidence            46778888       889877765321          11 22233443 222 1111  222221  2237898     6


Q ss_pred             Cc-EEEEecCCCcEEEEEcc--cCcccc-----cceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         156 GA-CVVTGSEDSCVYFLDIQ--SKEHKN-----AVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       156 ~~-~l~sgs~dg~v~iwd~~--~~~~~~-----~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ++ ++++.+.++.|.+||+.  +   +.     .+..+..+......+++.++|++.++...++.|..||..+++
T Consensus       160 g~~lyv~~~~~~~i~~~~~d~~~---G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~  231 (297)
T 3g4e_A          160 HKIFYYIDSLSYSVDAFDYDLQT---GQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK  231 (297)
T ss_dssp             SCEEEEEEGGGTEEEEEEECTTT---CCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred             CCEEEEecCCCCcEEEEeccCCC---CcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence            76 45667778899999974  3   32     233333344567889999999988888778889999987664

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.74  E-value=0.0024  Score=49.38  Aligned_cols=114  Identities=15%  Similarity=0.066  Sum_probs=70.2

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeee--cccc-CcceeEEEeeecCcccCCCcEEE
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFN--VNHK-SSKYQVRSTFCPIMSFREGACVV  160 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~--~~h~-~~~~~i~~~~s~~~~~~~~~~l~  160 (223)
                      ...+..+.++       ++|.++++...+.  .+..++.+ +... ....  .+.. ..+  -...+.|     ++.+++
T Consensus        85 ~~~~~gl~~d-------~dG~l~v~~~~~~--~v~~~~~~-g~~~-~~~~~~~~~~~~~~--~~i~~d~-----dG~l~~  146 (305)
T 3dr2_A           85 TAFTNGNAVD-------AQQRLVHCEHGRR--AITRSDAD-GQAH-LLVGRYAGKRLNSP--NDLIVAR-----DGAIWF  146 (305)
T ss_dssp             CSCEEEEEEC-------TTSCEEEEETTTT--EEEEECTT-SCEE-EEECEETTEECSCC--CCEEECT-----TSCEEE
T ss_pred             CCccceeeEC-------CCCCEEEEECCCC--EEEEECCC-CCEE-EEEeccCCCccCCC--CCEEECC-----CCCEEE
Confidence            5568889999       8999777765555  57777876 3321 1110  0111 111  1125777     788888


Q ss_pred             E----ecC-------------CCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCC------CcEEEee
Q psy3599         161 T----GSE-------------DSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQ------GLIILWS  217 (223)
Q Consensus       161 s----gs~-------------dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d------~~i~iwd  217 (223)
                      +    |..             .+.|+.+|..+   ++.....  .-.....++|+|++..|..+...      +.|..||
T Consensus       147 td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~---g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~  221 (305)
T 3dr2_A          147 TDPPFGLRKPSQGCPADPELAHHSVYRLPPDG---SPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFA  221 (305)
T ss_dssp             ECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS---CCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEE
T ss_pred             eCcCCCccccccccccccccCCCeEEEEcCCC---CcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEE
Confidence            6    442             24577777765   4433222  33456889999999977776654      6899998


Q ss_pred             CCC
Q psy3599         218 REK  220 (223)
Q Consensus       218 ~~~  220 (223)
                      +..
T Consensus       222 ~~~  224 (305)
T 3dr2_A          222 WRD  224 (305)
T ss_dssp             EET
T ss_pred             ecC
Confidence            753

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.70  E-value=0.0035  Score=47.70  Aligned_cols=114  Identities=11%  Similarity=0.000  Sum_probs=76.9

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEe
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTG  162 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sg  162 (223)
                      ...+.++.+.       +++.+.++...++  .+.++|.. +........ .....   ... .+.+     ++.++++.
T Consensus        19 ~~~p~~i~~d-------~~g~l~v~~~~~~--~v~~~~~~-~~~~~~~~~-~~~~~---~~~i~~~~-----~g~l~v~~   79 (300)
T 2qc5_A           19 DSGPYGITSS-------EDGKVWFTQHKAN--KISSLDQS-GRIKEFEVP-TPDAK---VMCLIVSS-----LGDIWFTE   79 (300)
T ss_dssp             TCCEEEEEEC-------TTSCEEEEETTTT--EEEEECTT-SCEEEEECS-STTCC---EEEEEECT-----TSCEEEEE
T ss_pred             CCCcceeeEC-------CCCCEEEEcCCCC--eEEEECCC-CceEEEECC-CCCCc---ceeEEECC-----CCCEEEEe
Confidence            4578899998       8898888776666  67788877 543321111 22222   333 6777     68888877


Q ss_pred             cCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         163 SEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       163 s~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      ..++.|..+|...   ......+......+.++++.+++.++++...++.|..||..
T Consensus        80 ~~~~~v~~~d~~g---~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~  133 (300)
T 2qc5_A           80 NGANKIGKLSKKG---GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD  133 (300)
T ss_dssp             TTTTEEEEECTTS---CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             cCCCeEEEECCCC---CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC
Confidence            7788899998764   22222223234568999999999988887767889888865

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.65  E-value=8.3e-06  Score=65.53  Aligned_cols=105  Identities=14%  Similarity=0.098  Sum_probs=58.2

Q ss_pred             CCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccc
Q psy3599         101 RDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKN  180 (223)
Q Consensus       101 ~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~  180 (223)
                      -++..|++++.++  .+..||..+|+.+... . .  ...  ....+..     ++..+++++.||.|+.||..+   ++
T Consensus         7 v~~~~v~~gs~dg--~v~a~d~~tG~~~W~~-~-~--~~~--~s~p~~~-----~g~~~v~~s~dg~l~a~d~~t---G~   70 (369)
T 2hz6_A            7 LPETLLFVSTLDG--SLHAVSKRTGSIKWTL-K-E--DPV--LQVPTHV-----EEPAFLPDPNDGSLYTLGSKN---NE   70 (369)
T ss_dssp             -CTTEEEEEETTS--EEEEEETTTCCEEEEE-E-C--CCS--CCCC----------CCEEECTTTCCEEEC--------C
T ss_pred             eeCCEEEEEcCCC--EEEEEECCCCCEEEEe-c-C--CCc--eecceEc-----CCCEEEEeCCCCEEEEEECCC---Cc
Confidence            4567777888888  7889999999877643 2 2  222  2222333     566888889999999999988   77


Q ss_pred             cceeeccccc-CEE-EEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         181 AVNKLQGHAC-PVL-GVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       181 ~~~~~~~h~~-~v~-~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+..+..+.. .+. +.... .+..+++++.|+.++.||.++|+
T Consensus        71 ~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~  113 (369)
T 2hz6_A           71 GLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGE  113 (369)
T ss_dssp             CSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC---
T ss_pred             eeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCc
Confidence            6655543321 110 00111 34567778889999999998876

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.61  E-value=0.00069  Score=53.06  Aligned_cols=104  Identities=15%  Similarity=0.192  Sum_probs=65.2

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeCCC-------eEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcE
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAANA-------VCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGAC  158 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~~~-------~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~  158 (223)
                      .+..+.|+       +++ +++++..+.       ...+.++|  ++. .....  .+ ..   +.. ++|     ++..
T Consensus       172 ~~~~~~~s-------pdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~--~~-~~---~~~-~sp-----dg~~  228 (347)
T 2gop_A          172 RFSSGIWH-------RDK-IVVNVPHREIIPQYFKFWDIYIWE--DGK-EEKMF--EK-VS---FYA-VDS-----DGER  228 (347)
T ss_dssp             TTCEEEEE-------TTE-EEEEEECCCSSCCSSCCEEEEEEE--TTE-EEEEE--EE-ES---EEE-EEE-----CSSC
T ss_pred             CcccccCC-------CCe-EEEEEecccccccccccccEEEeC--CCc-eEEec--cC-cc---eee-ECC-----CCCE
Confidence            45577888       888 766665321       11333445  443 22221  23 22   322 377     7887


Q ss_pred             EEEecCC--------CcEEEEEcccCcccccceeecccccCEEE-EEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         159 VVTGSED--------SCVYFLDIQSKEHKNAVNKLQGHACPVLG-VSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       159 l~sgs~d--------g~v~iwd~~~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      |+.++.+        ..|++||  +   ++.......|...+.. +.|+ ++ ++++++.++.++|| +.+
T Consensus       229 l~~~~~~~~~~~~~~~~l~~~d--~---~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~  291 (347)
T 2gop_A          229 ILLYGKPEKKYMSEHNKLYIYD--G---KEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD  291 (347)
T ss_dssp             EEEEECCSSSCCCSSCEEEEEC--S---SCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred             EEEEEccccCCccccceEEEEC--C---CceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence            7766644        3688888  5   5544445556677886 8999 88 88999999999999 753

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.60  E-value=0.0072  Score=46.52  Aligned_cols=103  Identities=13%  Similarity=0.069  Sum_probs=66.2

Q ss_pred             eeEEEEeecccccCCCCeEEE-EEeCCCeEEEEEecC--CCceEEe-eeee-c-cccCcceeEEEeeecCcccCCCcEEE
Q psy3599          87 ITCLSWRSWISREARDPTLLV-NIAANAVCILKVLDK--EGAVQLK-RKFN-V-NHKSSKYQVRSTFCPIMSFREGACVV  160 (223)
Q Consensus        87 i~~l~~~~~~~~~~~~~~~l~-~~~~~~~~~v~i~d~--~~~~~~~-~~~~-~-~h~~~~~~i~~~~s~~~~~~~~~~l~  160 (223)
                      ...++|+       ++++.|. +.+.+.  .+.+|+.  .++.... ..+. . .+...+  -..++.+     ++.+.+
T Consensus       151 pngi~~s-------pdg~~lyv~~~~~~--~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p--~g~~~d~-----~G~lwv  214 (297)
T 3g4e_A          151 SNGLDWS-------LDHKIFYYIDSLSY--SVDAFDYDLQTGQISNRRSVYKLEKEEQIP--DGMCIDA-----EGKLWV  214 (297)
T ss_dssp             EEEEEEC-------TTSCEEEEEEGGGT--EEEEEEECTTTCCEEEEEEEEECCGGGCEE--EEEEEBT-----TSCEEE
T ss_pred             ccceEEc-------CCCCEEEEecCCCC--cEEEEeccCCCCcccCcEEEEECCCCCCCC--CeeEECC-----CCCEEE
Confidence            4568888       8887554 545555  5666765  4443211 1111 1 111221  2226777     788888


Q ss_pred             EecCCCcEEEEEcccCcccccceeecccccCEEEEEEe-cCCCEEEEEe
Q psy3599         161 TGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFN-YDESLLATSD  208 (223)
Q Consensus       161 sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~l~s~s  208 (223)
                      +....+.|..||..+   ++.+..+..+...+++++|. |++..|..++
T Consensus       215 a~~~~~~v~~~d~~t---G~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          215 ACYNGGRVIRLDPVT---GKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             EEETTTEEEEECTTT---CCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             EEcCCCEEEEEcCCC---ceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence            887788899999998   88888888776789999998 8876554433

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.56  E-value=0.00045  Score=55.72  Aligned_cols=106  Identities=11%  Similarity=0.022  Sum_probs=74.0

Q ss_pred             CCCeEEEEEeC-----CCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec----------CC
Q psy3599         101 RDPTLLVNIAA-----NAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS----------ED  165 (223)
Q Consensus       101 ~~~~~l~~~~~-----~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs----------~d  165 (223)
                      |++..+.....     +.  .+.+.|..+++.+... ..+...     ...++|     +++.++.++          .+
T Consensus        42 pd~~~vyV~~~~~~~~~~--~V~ViD~~t~~v~~~I-~vG~~P-----~va~sp-----DG~~lyVan~~~~r~~~G~~~  108 (386)
T 3sjl_D           42 PDARRVYVNDPAHFAAVT--QQFVIDGEAGRVIGMI-DGGFLP-----NPVVAD-----DGSFIAHASTVFSRIARGERT  108 (386)
T ss_dssp             CCTTEEEEEECGGGCSSE--EEEEEETTTTEEEEEE-EECSSC-----EEEECT-----TSSCEEEEEEEEEETTEEEEE
T ss_pred             CCCCEEEEEcCcccCCCC--EEEEEECCCCeEEEEE-ECCCCC-----cEEECC-----CCCEEEEEcccccccccCCCC
Confidence            77766665543     44  7888899988776643 324332     146899     787776654          35


Q ss_pred             CcEEEEEcccCcccccceeecccc-------cCEEEEEEecCCCEEEEEeC--CCcEEEeeCCCCC
Q psy3599         166 SCVYFLDIQSKEHKNAVNKLQGHA-------CPVLGVSFNYDESLLATSDY--QGLIILWSREKHE  222 (223)
Q Consensus       166 g~v~iwd~~~~~~~~~~~~~~~h~-------~~v~~v~~~~~~~~l~s~s~--d~~i~iwd~~~~~  222 (223)
                      +.|.+||..+   .+.+..+....       .....+.++|+|.++..++.  ++.|.++|+.+++
T Consensus       109 ~~VsviD~~t---~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~  171 (386)
T 3sjl_D          109 DYVEVFDPVT---LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA  171 (386)
T ss_dssp             EEEEEECTTT---CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred             CEEEEEECCC---CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc
Confidence            7899999999   77777664211       13456899999998887763  6899999998764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.48  E-value=0.0036  Score=47.78  Aligned_cols=113  Identities=8%  Similarity=0.012  Sum_probs=74.8

Q ss_pred             eeEEEEeecccccCCCCeEEEEEeC--CCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecC
Q psy3599          87 ITCLSWRSWISREARDPTLLVNIAA--NAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE  164 (223)
Q Consensus        87 i~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~  164 (223)
                      ...+.|+       +++.++++.+.  +.  .+++.|+.+++.+.... .+.....  ....+.      ++.+.++.-.
T Consensus        23 ~~Gl~~~-------~dg~Lyvstg~~~~s--~v~~iD~~tg~v~~~i~-l~~~~fg--eGi~~~------g~~lyv~t~~   84 (266)
T 2iwa_A           23 TQGLVYA-------ENDTLFESTGLYGRS--SVRQVALQTGKVENIHK-MDDSYFG--EGLTLL------NEKLYQVVWL   84 (266)
T ss_dssp             EEEEEEC-------STTEEEEEECSTTTC--EEEEEETTTCCEEEEEE-CCTTCCE--EEEEEE------TTEEEEEETT
T ss_pred             cccEEEe-------CCCeEEEECCCCCCC--EEEEEECCCCCEEEEEe-cCCCcce--EEEEEe------CCEEEEEEec
Confidence            5789999       77777777653  45  78889999998776532 1222121  222232      2456666667


Q ss_pred             CCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         165 DSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       165 dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ++.+.++|..+   .+.+..+......-  ..+++++..+..+..++.|.++|..+.+
T Consensus        85 ~~~v~viD~~t---~~v~~~i~~g~~~g--~glt~Dg~~l~vs~gs~~l~viD~~t~~  137 (266)
T 2iwa_A           85 KNIGFIYDRRT---LSNIKNFTHQMKDG--WGLATDGKILYGSDGTSILYEIDPHTFK  137 (266)
T ss_dssp             CSEEEEEETTT---TEEEEEEECCSSSC--CEEEECSSSEEEECSSSEEEEECTTTCC
T ss_pred             CCEEEEEECCC---CcEEEEEECCCCCe--EEEEECCCEEEEECCCCeEEEEECCCCc
Confidence            88999999998   88888775321111  3355677766666678999999988754

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.45  E-value=0.0042  Score=53.88  Aligned_cols=53  Identities=13%  Similarity=0.203  Sum_probs=41.9

Q ss_pred             CcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         166 SCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       166 g~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      |.|..||+.+   ++.+-.++ +..++....+...+..++.++.||.+++||.++++
T Consensus       457 g~l~A~D~~t---G~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~  509 (677)
T 1kb0_A          457 GRLLAWDPVA---QKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE  509 (677)
T ss_dssp             EEEEEEETTT---TEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cEEEEEeCCC---CcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence            7799999999   88776665 33344555566778888889999999999999886

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.39  E-value=0.0047  Score=49.53  Aligned_cols=107  Identities=12%  Similarity=-0.037  Sum_probs=70.1

Q ss_pred             CCCeEEEEEeC---CCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec----------CCCc
Q psy3599         101 RDPTLLVNIAA---NAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS----------EDSC  167 (223)
Q Consensus       101 ~~~~~l~~~~~---~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs----------~dg~  167 (223)
                      +++..+..+..   +.+..+.++|..+++.+.. ++.+...     ...++|     +++.++.+.          .++.
T Consensus        30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-i~~g~~p-----~i~~sp-----Dg~~lyv~n~~~~~~~rg~~~~~   98 (373)
T 2mad_H           30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-VNGGFLP-----NPVAAH-----SGSEFALASTSFSRIAKGKRTDY   98 (373)
T ss_pred             CCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-ecCCCCC-----CeEECC-----CCCEEEEEeccccccccCCCCCe
Confidence            55655554432   2111567889888876543 3323222     225899     788887775          3678


Q ss_pred             EEEEEcccCcccccceeeccc-------ccCEEEEEEecCCCEEEEEeC--CCcEEEeeCCCCC
Q psy3599         168 VYFLDIQSKEHKNAVNKLQGH-------ACPVLGVSFNYDESLLATSDY--QGLIILWSREKHE  222 (223)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~l~s~s~--d~~i~iwd~~~~~  222 (223)
                      |.+||..+   .+.+..+...       ......+.|+|+|.+|..++.  ++.|.++| .+++
T Consensus        99 v~viD~~t---~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~  158 (373)
T 2mad_H           99 VEVFDPVT---FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS  158 (373)
T ss_pred             EEEEECCC---CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC
Confidence            99999988   6666655321       122457899999999988874  57899999 8765

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.31  E-value=0.0085  Score=52.08  Aligned_cols=54  Identities=13%  Similarity=0.116  Sum_probs=42.4

Q ss_pred             CCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         165 DSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       165 dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +|.|+.||+.+   ++.+-.++.+. .+....+...+.+++.++.||.++.||.++++
T Consensus       454 ~g~l~A~D~~t---G~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~  507 (689)
T 1yiq_A          454 SGKLIAWDPVK---QQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGE  507 (689)
T ss_dssp             EEEEEEEETTT---TEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ceeEEEEECCC---CCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence            37799999999   88777776443 23334556678889999999999999999986

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.27  E-value=0.0089  Score=48.52  Aligned_cols=118  Identities=8%  Similarity=0.028  Sum_probs=75.1

Q ss_pred             CCCeeEEEEeecccccCC-CCeEEEEEeCCCeEEEEEecCCCceEEee-ee-eccccCcceeE-EEeeecCcccCCCcEE
Q psy3599          84 DCPITCLSWRSWISREAR-DPTLLVNIAANAVCILKVLDKEGAVQLKR-KF-NVNHKSSKYQV-RSTFCPIMSFREGACV  159 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~v~i~d~~~~~~~~~-~~-~~~h~~~~~~i-~~~~s~~~~~~~~~~l  159 (223)
                      ...+.+++++       + ++.+++ +..++  .+..||..++..... .. ..++.... +. ..+|+|.    ++.++
T Consensus       218 ~~~p~~iav~-------p~~g~lyv-~d~~~--~I~~~d~~~~~~~~~~~~~~~g~~~~~-P~~~ia~~p~----~g~ly  282 (409)
T 3hrp_A          218 SGKIGAVALD-------ETEEWLYF-VDSNK--NFGRFNVKTQEVTLIKQLELSGSLGTN-PGPYLIYYFV----DSNFY  282 (409)
T ss_dssp             CSCCCBCEEC-------TTSSEEEE-ECTTC--EEEEEETTTCCEEEEEECCCCSCCCCS-SCCEEEEETT----TTEEE
T ss_pred             cCCcEEEEEe-------CCCCeEEE-EECCC--cEEEEECCCCCEEEEecccccCCCCCC-ccccEEEeCC----CCEEE
Confidence            4566788888       6 666666 55566  677888876643221 00 11222111 02 4468884    47777


Q ss_pred             EEecCCCcEEEEEcccCcccccceeeccc---------------ccCEEEEEEecCCCEEEEEe-CCCcEEEeeCCCC
Q psy3599         160 VTGSEDSCVYFLDIQSKEHKNAVNKLQGH---------------ACPVLGVSFNYDESLLATSD-YQGLIILWSREKH  221 (223)
Q Consensus       160 ~sgs~dg~v~iwd~~~~~~~~~~~~~~~h---------------~~~v~~v~~~~~~~~l~s~s-~d~~i~iwd~~~~  221 (223)
                      ++-...+.|+.|+...   .  +..+.++               -.....++++++|+++++-+ .++.|+.||+.++
T Consensus       283 v~d~~~~~I~~~~~~g---~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G  355 (409)
T 3hrp_A          283 MSDQNLSSVYKITPDG---E--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG  355 (409)
T ss_dssp             EEETTTTEEEEECTTC---C--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred             EEeCCCCEEEEEecCC---C--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence            8877888999998765   2  2222222               13478999999999888877 8899999996554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.16  E-value=0.026  Score=44.37  Aligned_cols=115  Identities=12%  Similarity=0.027  Sum_probs=70.8

Q ss_pred             CCCeeEEEEeecccccCCCCeEEEEEeC-----CCeEEEEEecCCCceEEeeeeecc-----ccCcceeEEEeeecCccc
Q psy3599          84 DCPITCLSWRSWISREARDPTLLVNIAA-----NAVCILKVLDKEGAVQLKRKFNVN-----HKSSKYQVRSTFCPIMSF  153 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~~l~~~~~-----~~~~~v~i~d~~~~~~~~~~~~~~-----h~~~~~~i~~~~s~~~~~  153 (223)
                      ...+..+.++       +++.++++-..     +.  .+.+||+.+++.+... ...     +....  -..++++.   
T Consensus        66 ~~~p~gv~~d-------~~g~L~v~D~g~~~~~~~--~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~--~~v~vd~~---  130 (343)
T 2qe8_A           66 FDTVLGIKSD-------GNGIVWMLDNGNQSKSVP--KLVAWDTLNNQLSRVI-YLPPPITLSNSFV--NDLAVDLI---  130 (343)
T ss_dssp             CSCEEEEEEC-------SSSEEEEEECHHHHTSCC--EEEEEETTTTEEEEEE-ECCTTTSCTTCCC--CEEEEETT---
T ss_pred             eeEeeEEEEc-------CCCcEEEEcCCCCcCCCC--eEEEEECCCCeEEEEE-ECChhhccccccc--ceEEEecC---
Confidence            4578899999       88887776543     34  6778899888644432 111     11111  22257762   


Q ss_pred             CCCcEEEEec---CCCcEEEEEcccCcccccceeeccc-----------------------------ccCEEEEEEecCC
Q psy3599         154 REGACVVTGS---EDSCVYFLDIQSKEHKNAVNKLQGH-----------------------------ACPVLGVSFNYDE  201 (223)
Q Consensus       154 ~~~~~l~sgs---~dg~v~iwd~~~~~~~~~~~~~~~h-----------------------------~~~v~~v~~~~~~  201 (223)
                       ++..+++-.   .++.|.+||..+   ++....+.+|                             ...+..++|+|++
T Consensus       131 -~g~~yvtd~~~~~~~~i~v~d~~~---g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg  206 (343)
T 2qe8_A          131 -HNFVYISDPAPDDKAALIRVDLQT---GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN  206 (343)
T ss_dssp             -TTEEEEEECCSGGGCEEEEEETTT---CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS
T ss_pred             -CCEEEEEcCccCCCCeEEEEECCC---CCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCC
Confidence             355556655   678899999886   4443333221                             1236889999999


Q ss_pred             CEEEEEeCCC-cEEEee
Q psy3599         202 SLLATSDYQG-LIILWS  217 (223)
Q Consensus       202 ~~l~s~s~d~-~i~iwd  217 (223)
                      ..|..+..++ .+..++
T Consensus       207 ~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          207 EWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             CEEEEEESSCSEEEEEE
T ss_pred             CEEEEEeCCCCeEEEEE
Confidence            9888877665 344333

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.15  E-value=0.057  Score=42.08  Aligned_cols=101  Identities=15%  Similarity=0.041  Sum_probs=61.6

Q ss_pred             eeEEEEeecccccCCCCeEEEEE-eCCCeEEEEEecCC--Cc-eEEe-eeee-c-cccCcceeEEE-eeecCcccCCCcE
Q psy3599          87 ITCLSWRSWISREARDPTLLVNI-AANAVCILKVLDKE--GA-VQLK-RKFN-V-NHKSSKYQVRS-TFCPIMSFREGAC  158 (223)
Q Consensus        87 i~~l~~~~~~~~~~~~~~~l~~~-~~~~~~~v~i~d~~--~~-~~~~-~~~~-~-~h~~~~~~i~~-~~s~~~~~~~~~~  158 (223)
                      ...++|+       ++++.|..+ +.++  .+.+|+..  ++ .... ..+. . .....   ... .+.+     ++.+
T Consensus       181 ~~~i~~s-------~dg~~lyv~~~~~~--~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~---p~gi~~d~-----~G~l  243 (326)
T 2ghs_A          181 PNSICFS-------PDGTTGYFVDTKVN--RLMRVPLDARTGLPTGKAEVFIDSTGIKGG---MDGSVCDA-----EGHI  243 (326)
T ss_dssp             EEEEEEC-------TTSCEEEEEETTTC--EEEEEEBCTTTCCBSSCCEEEEECTTSSSE---EEEEEECT-----TSCE
T ss_pred             cCCeEEc-------CCCCEEEEEECCCC--EEEEEEcccccCCcccCceEEEECCCCCCC---CCeeEECC-----CCCE
Confidence            4567888       888765544 4455  67777764  44 2100 1110 1 11122   233 5666     6887


Q ss_pred             EEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEe-cCCCEEEEEe
Q psy3599         159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFN-YDESLLATSD  208 (223)
Q Consensus       159 l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~l~s~s  208 (223)
                      .++...++.|.+||. .   ++.+..+..+...+.+++|. +++..|..++
T Consensus       244 wva~~~~~~v~~~d~-~---g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          244 WNARWGEGAVDRYDT-D---GNHIARYEVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             EEEEETTTEEEEECT-T---CCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             EEEEeCCCEEEEECC-C---CCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence            777766788999997 4   55666666666679999998 8877654443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.14  E-value=0.016  Score=44.11  Aligned_cols=110  Identities=9%  Similarity=-0.018  Sum_probs=74.8

Q ss_pred             eeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCC
Q psy3599          87 ITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDS  166 (223)
Q Consensus        87 i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg  166 (223)
                      ...+.|+       . +.++++++.++  .++.+|+++++.+...+  ......  .-....      ++.+.+..-.++
T Consensus        57 tqGL~~~-------~-~~Ly~stG~~g--~v~~iD~~Tgkv~~~~l--~~~~Fg--eGit~~------g~~Ly~ltw~~~  116 (268)
T 3nok_A           57 TQGLVFH-------Q-GHFFESTGHQG--TLRQLSLESAQPVWMER--LGNIFA--EGLASD------GERLYQLTWTEG  116 (268)
T ss_dssp             EEEEEEE-------T-TEEEEEETTTT--EEEECCSSCSSCSEEEE--CTTCCE--EEEEEC------SSCEEEEESSSC
T ss_pred             cceEEEE-------C-CEEEEEcCCCC--EEEEEECCCCcEEeEEC--CCCcce--eEEEEe------CCEEEEEEccCC
Confidence            4678887       3 67777888888  68999999997776542  221111  112232      355666666788


Q ss_pred             cEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         167 CVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+.++|..+   .+.+.++..... -+.++  +++..|..+..++.|.++|..+.+
T Consensus       117 ~v~V~D~~T---l~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~  166 (268)
T 3nok_A          117 LLFTWSGMP---PQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFA  166 (268)
T ss_dssp             EEEEEETTT---TEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCC
T ss_pred             EEEEEECCc---CcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCe
Confidence            999999999   888888874322 23444  567777777678999999988754

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.10  E-value=0.045  Score=43.77  Aligned_cols=107  Identities=9%  Similarity=-0.055  Sum_probs=70.0

Q ss_pred             EEEEeecccccCCCCeEEEEEe----------CCCeEEEEEecCCCceEEeeeeecc-c-----cCcceeEEEeeecCcc
Q psy3599          89 CLSWRSWISREARDPTLLVNIA----------ANAVCILKVLDKEGAVQLKRKFNVN-H-----KSSKYQVRSTFCPIMS  152 (223)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~~~----------~~~~~~v~i~d~~~~~~~~~~~~~~-h-----~~~~~~i~~~~s~~~~  152 (223)
                      .+.++       ||+++|..+.          .+.  .+.++|..+.+.+...- .+ .     ...+  -...++|   
T Consensus        70 ~i~~s-------pDg~~lyv~n~~~~~~~rg~~~~--~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p--~~~~~sp---  134 (373)
T 2mad_H           70 NPVAA-------HSGSEFALASTSFSRIAKGKRTD--YVEVFDPVTFLPIADIE-LPDAPRFDVGPYS--WMNANTP---  134 (373)
T ss_pred             CeEEC-------CCCCEEEEEeccccccccCCCCC--eEEEEECCCCcEEEEEE-CCCccccccCCCc--cceEECC---
Confidence            99999       9998888764          234  57888988775554321 12 0     0111  2336899   


Q ss_pred             cCCCcEEEEecC--CCcEEEEEcccCccccccee-ecccccCEEEEEEecCC-CEEEEEeCCCcEEEeeCCCC
Q psy3599         153 FREGACVVTGSE--DSCVYFLDIQSKEHKNAVNK-LQGHACPVLGVSFNYDE-SLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       153 ~~~~~~l~sgs~--dg~v~iwd~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~-~~l~s~s~d~~i~iwd~~~~  221 (223)
                        ++++|+.++.  ++.|.++| .+   ++.+.. +... .   ++.+.|++ ..+++.+.||.+.++|. ++
T Consensus       135 --DG~~l~v~n~~~~~~v~viD-~t---~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g  196 (373)
T 2mad_H          135 --NNADLLFFQFAAGPAVGLVV-QG---GSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AG  196 (373)
T ss_pred             --CCCEEEEEecCCCCeEEEEE-CC---CCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CC
Confidence              7988888764  47899999 88   777666 5422 1   24445554 45566677888888887 54

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.10  E-value=0.027  Score=42.31  Aligned_cols=115  Identities=13%  Similarity=0.042  Sum_probs=74.2

Q ss_pred             CCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecC
Q psy3599          85 CPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE  164 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~  164 (223)
                      .-...+.|+       . +.++.+++..+-..++.+|+.+++.+...- .......  .-....      ++.+....-.
T Consensus        21 ~ftqGL~~~-------~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~-l~~~~fg--eGi~~~------~~~ly~ltw~   83 (243)
T 3mbr_X           21 AFTEGLFYL-------R-GHLYESTGETGRSSVRKVDLETGRILQRAE-VPPPYFG--AGIVAW------RDRLIQLTWR   83 (243)
T ss_dssp             CCEEEEEEE-------T-TEEEEEECCTTSCEEEEEETTTCCEEEEEE-CCTTCCE--EEEEEE------TTEEEEEESS
T ss_pred             cccccEEEE-------C-CEEEEECCCCCCceEEEEECCCCCEEEEEe-CCCCcce--eEEEEe------CCEEEEEEee
Confidence            345678998       5 677777775422278888999997776532 1221111  222222      3556666667


Q ss_pred             CCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         165 DSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       165 dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ++.+.++|..+   .+.+.++..... -+.++  +++..|..+..++.|.++|..+.+
T Consensus        84 ~~~v~v~D~~t---l~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~  135 (243)
T 3mbr_X           84 NHEGFVYDLAT---LTPRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQ  135 (243)
T ss_dssp             SSEEEEEETTT---TEEEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCC
T ss_pred             CCEEEEEECCc---CcEEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCe
Confidence            88999999999   888888874332 24444  566666666668899999988754

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.06  E-value=0.019  Score=43.57  Aligned_cols=113  Identities=12%  Similarity=0.099  Sum_probs=72.4

Q ss_pred             eeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCC
Q psy3599          87 ITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDS  166 (223)
Q Consensus        87 i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg  166 (223)
                      ...+.|+        ++.++.+++.++-..++.+|+.+++.+.... .+.....  .-  ..+.    ++.+.+..-.++
T Consensus        45 tqGL~~~--------~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~-l~~~~Fg--eG--it~~----g~~ly~ltw~~~  107 (262)
T 3nol_A           45 TEGFFYR--------NGYFYESTGLNGRSSIRKVDIESGKTLQQIE-LGKRYFG--EG--ISDW----KDKIVGLTWKNG  107 (262)
T ss_dssp             EEEEEEE--------TTEEEEEEEETTEEEEEEECTTTCCEEEEEE-CCTTCCE--EE--EEEE----TTEEEEEESSSS
T ss_pred             cceEEEE--------CCEEEEECCCCCCceEEEEECCCCcEEEEEe-cCCccce--eE--EEEe----CCEEEEEEeeCC
Confidence            3678887        4577777776543478889999998776532 2221111  21  2231    345555555688


Q ss_pred             cEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         167 CVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+.++|..+   .+.+.++..... -+.+  ++++..|..+..++.|.++|..+.+
T Consensus       108 ~v~v~D~~t---~~~~~ti~~~~e-G~gl--t~dg~~L~~SdGs~~i~~iDp~T~~  157 (262)
T 3nol_A          108 LGFVWNIRN---LRQVRSFNYDGE-GWGL--THNDQYLIMSDGTPVLRFLDPESLT  157 (262)
T ss_dssp             EEEEEETTT---CCEEEEEECSSC-CCCE--EECSSCEEECCSSSEEEEECTTTCS
T ss_pred             EEEEEECcc---CcEEEEEECCCC-ceEE--ecCCCEEEEECCCCeEEEEcCCCCe
Confidence            999999999   888888764322 2333  4566766666667889999988754

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.03  E-value=0.012  Score=47.32  Aligned_cols=109  Identities=10%  Similarity=0.046  Sum_probs=69.5

Q ss_pred             EEEEeecccccCCCCeEEEEEe----------CCCeEEEEEecCCCceEEeeeeeccc--c----CcceeEEEeeecCcc
Q psy3599          89 CLSWRSWISREARDPTLLVNIA----------ANAVCILKVLDKEGAVQLKRKFNVNH--K----SSKYQVRSTFCPIMS  152 (223)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~~~----------~~~~~~v~i~d~~~~~~~~~~~~~~h--~----~~~~~i~~~~s~~~~  152 (223)
                      .+.++       ||++++..+.          .+.  .+.+||..+.+.+.... .+.  .    ..+  -...++|   
T Consensus        82 ~va~s-------pDG~~lyVan~~~~r~~~G~~~~--~VsviD~~t~~v~~~I~-v~~g~r~~~g~~P--~~~a~sp---  146 (386)
T 3sjl_D           82 NPVVA-------DDGSFIAHASTVFSRIARGERTD--YVEVFDPVTLLPTADIE-LPDAPRFLVGTYP--WMTSLTP---  146 (386)
T ss_dssp             EEEEC-------TTSSCEEEEEEEEEETTEEEEEE--EEEEECTTTCCEEEEEE-ETTCCCCCBSCCG--GGEEECT---
T ss_pred             cEEEC-------CCCCEEEEEcccccccccCCCCC--EEEEEECCCCeEEEEEE-CCCccccccCCCC--ceEEEcC---
Confidence            49999       9998776654          234  68999999887665432 121  0    111  2235899   


Q ss_pred             cCCCcEEEEecC--CCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         153 FREGACVVTGSE--DSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       153 ~~~~~~l~sgs~--dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                        ++++++.+..  ++.|.++|+.+   ++.+..+....  + ...+......+++.+.||++.+.++.+
T Consensus       147 --DGk~lyVan~~~~~~VsVID~~t---~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~  208 (386)
T 3sjl_D          147 --DGKTLLFYQFSPAPAVGVVDLEG---KAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGT  208 (386)
T ss_dssp             --TSSEEEEEECSSSCEEEEEETTT---TEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred             --CCCEEEEEEcCCCCeEEEEECCC---CcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCC
Confidence              7888877764  68999999999   88877775321  1 122222334555666677777766654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.03  E-value=0.003  Score=51.64  Aligned_cols=106  Identities=11%  Similarity=0.018  Sum_probs=72.1

Q ss_pred             CCCeEEEEEe-CC----CeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec----------CC
Q psy3599         101 RDPTLLVNIA-AN----AVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS----------ED  165 (223)
Q Consensus       101 ~~~~~l~~~~-~~----~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs----------~d  165 (223)
                      +++..+..+. ..    +  .+.++|..+++.+... ..+...     ...++|     +++.++.+.          .+
T Consensus        82 ~~~~~vyV~n~~~~~~~~--~VsVID~~t~~vv~~I-~vG~~P-----gia~Sp-----Dgk~lyVan~~~~~~~~G~~~  148 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAIT--QQFVIDGSTGRILGMT-DGGFLP-----HPVAAE-----DGSFFAQASTVFERIARGKRT  148 (426)
T ss_dssp             CCTTEEEEEECTTTCSSE--EEEEEETTTTEEEEEE-EECSSC-----EEEECT-----TSSCEEEEEEEEEETTEEEEE
T ss_pred             CCCCEEEEECCCcCCCCC--eEEEEECCCCEEEEEE-ECCCCC-----ceEECC-----CCCEEEEEeccccccccCCCC
Confidence            5555444433 22    4  7888999998776643 334432     235899     677776665          36


Q ss_pred             CcEEEEEcccCcccccceeeccc-------ccCEEEEEEecCCCEEEEEeC--CCcEEEeeCCCCC
Q psy3599         166 SCVYFLDIQSKEHKNAVNKLQGH-------ACPVLGVSFNYDESLLATSDY--QGLIILWSREKHE  222 (223)
Q Consensus       166 g~v~iwd~~~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~l~s~s~--d~~i~iwd~~~~~  222 (223)
                      +.|.++|..+   .+.+..+.-.       ......+.++|+|.++..++.  ++.|.+.|+.+.+
T Consensus       149 ~~VsviD~~t---~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k  211 (426)
T 3c75_H          149 DYVEVFDPVT---FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT  211 (426)
T ss_dssp             EEEEEECTTT---CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred             CEEEEEECCC---CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe
Confidence            7899999998   7777666421       122346789999998888764  5789999998754

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=96.89  E-value=0.057  Score=42.08  Aligned_cols=111  Identities=9%  Similarity=0.048  Sum_probs=67.0

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeCC-----CeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEE-
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAAN-----AVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACV-  159 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~~-----~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l-  159 (223)
                      .+.++.++       ++|.++++...+     .. .+..++  ++.. ....  ......  -..+|+|     +++.+ 
T Consensus       135 ~~~~i~~d-------~~G~l~v~~~~~~~~~~~~-~l~~~~--~g~~-~~~~--~~~~~~--~~i~~s~-----dg~~ly  194 (326)
T 2ghs_A          135 RSNDGRMH-------PSGALWIGTMGRKAETGAG-SIYHVA--KGKV-TKLF--ADISIP--NSICFSP-----DGTTGY  194 (326)
T ss_dssp             EEEEEEEC-------TTSCEEEEEEETTCCTTCE-EEEEEE--TTEE-EEEE--EEESSE--EEEEECT-----TSCEEE
T ss_pred             CCCCEEEC-------CCCCEEEEeCCCcCCCCce-EEEEEe--CCcE-EEee--CCCccc--CCeEEcC-----CCCEEE
Confidence            46788898       888877765421     11 233334  3432 2111  221221  2236888     67654 


Q ss_pred             EEecCCCcEEEEEcc--cCccc-cc-----ceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCC
Q psy3599         160 VTGSEDSCVYFLDIQ--SKEHK-NA-----VNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE  219 (223)
Q Consensus       160 ~sgs~dg~v~iwd~~--~~~~~-~~-----~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~  219 (223)
                      ++.+.++.|.+||+.  +   + ..     +..+.........+.+.++|++.++...++.|..||..
T Consensus       195 v~~~~~~~I~~~d~~~~~---Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          195 FVDTKVNRLMRVPLDART---GLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             EEETTTCEEEEEEBCTTT---CCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred             EEECCCCEEEEEEccccc---CCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence            555667899999986  4   3 21     22233334456789999999988877667889999873

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=96.64  E-value=0.022  Score=44.80  Aligned_cols=116  Identities=7%  Similarity=-0.019  Sum_probs=70.5

Q ss_pred             CCeeEEEEeecccccCCCCeEEEEEe--CCC-eEEEEEecCCCceEEeeeee------ccccCcceeEEEeeecCcccCC
Q psy3599          85 CPITCLSWRSWISREARDPTLLVNIA--ANA-VCILKVLDKEGAVQLKRKFN------VNHKSSKYQVRSTFCPIMSFRE  155 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~~~~--~~~-~~~v~i~d~~~~~~~~~~~~------~~h~~~~~~i~~~~s~~~~~~~  155 (223)
                      ..+..++++       ++|+++++..  .++ .+.+.+ +  ++. +. .++      .++...+  ....+.+     +
T Consensus        17 ~~p~~va~~-------~~g~~~v~~~~~~~~~~~l~~~-~--~g~-~~-~~p~~~~~~~~~~~~p--~gv~~d~-----~   77 (343)
T 2qe8_A           17 LAPGNITLT-------PDGRLFLSLHQFYQPEMQVAEL-T--QDG-LI-PFPPQSGNAIITFDTV--LGIKSDG-----N   77 (343)
T ss_dssp             SCEEEEEEC-------TTSCEEEEECGGGCCSCSEEEE-E--TTE-EE-ESCCCCSSCCCCCSCE--EEEEECS-----S
T ss_pred             CCcceEEEC-------CCCCEEEEeCCCCCCceEEEEE-C--CCC-ee-cCCCcccCcccceeEe--eEEEEcC-----C
Confidence            567889998       8999888864  122 113333 2  343 22 111      0122232  3337888     6


Q ss_pred             CcEEEEecC-----CCcEEEEEcccCcccccceeecc------cccCEEEEEEecC-CCEEEEEe---CCCcEEEeeCCC
Q psy3599         156 GACVVTGSE-----DSCVYFLDIQSKEHKNAVNKLQG------HACPVLGVSFNYD-ESLLATSD---YQGLIILWSREK  220 (223)
Q Consensus       156 ~~~l~sgs~-----dg~v~iwd~~~~~~~~~~~~~~~------h~~~v~~v~~~~~-~~~l~s~s---~d~~i~iwd~~~  220 (223)
                      +.++++-..     ++.|.+||..+   ++.+..+..      +......++++++ +..+++.+   .++.|.+||+.+
T Consensus        78 g~L~v~D~g~~~~~~~~i~~~d~~t---g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~  154 (343)
T 2qe8_A           78 GIVWMLDNGNQSKSVPKLVAWDTLN---NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT  154 (343)
T ss_dssp             SEEEEEECHHHHTSCCEEEEEETTT---TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT
T ss_pred             CcEEEEcCCCCcCCCCeEEEEECCC---CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC
Confidence            776665433     57899999988   665554432      2235688999986 44556655   678899999876


Q ss_pred             CC
Q psy3599         221 HE  222 (223)
Q Consensus       221 ~~  222 (223)
                      ++
T Consensus       155 g~  156 (343)
T 2qe8_A          155 GL  156 (343)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.53  E-value=0.04  Score=43.64  Aligned_cols=105  Identities=12%  Similarity=0.154  Sum_probs=63.5

Q ss_pred             CeEEEEEeCCCeEEEEEecCCCceEEeeeeecccc-------CcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEccc
Q psy3599         103 PTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHK-------SSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQS  175 (223)
Q Consensus       103 ~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~-------~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~  175 (223)
                      +..+..++.++  .+..+|..+++.+...- ....       ...  +......     ++..++.++.++.|+.+|..+
T Consensus        53 ~~~v~~~~~~g--~v~a~d~~tG~~~W~~~-~~~~~~~~~~~~~~--~~~~~~~-----~~~~v~v~~~~g~l~a~d~~t  122 (376)
T 3q7m_A           53 DNVVYAADRAG--LVKALNADDGKEIWSVS-LAEKDGWFSKEPAL--LSGGVTV-----SGGHVYIGSEKAQVYALNTSD  122 (376)
T ss_dssp             TTEEEEECTTS--EEEEEETTTCCEEEEEE-CCC---CCSCCCCC--EEEEEEE-----ETTEEEEEETTSEEEEEETTT
T ss_pred             CCEEEEEcCCC--eEEEEEccCCceeeeec-CccccccccccCcc--cccCceE-----eCCEEEEEcCCCEEEEEECCC
Confidence            34455555555  57778988887665421 1111       111  3222222     466777888999999999998


Q ss_pred             CcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         176 KEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       176 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                         ++.+...............  .+..++.++.++.+..+|.++++
T Consensus       123 ---G~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~  164 (376)
T 3q7m_A          123 ---GTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGA  164 (376)
T ss_dssp             ---CCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred             ---CCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCc
Confidence               7766555433221111122  24567778889999999998875

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=96.50  E-value=0.038  Score=42.50  Aligned_cols=105  Identities=12%  Similarity=0.073  Sum_probs=60.2

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeCC------CeEEEEEecCCCceEEe--eeeeccccCcceeEEEeeecCcccCCCc
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAAN------AVCILKVLDKEGAVQLK--RKFNVNHKSSKYQVRSTFCPIMSFREGA  157 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~~------~~~~v~i~d~~~~~~~~--~~~~~~h~~~~~~i~~~~s~~~~~~~~~  157 (223)
                      ....++|+       +++..|..+...      .  .+.+|+...+. +.  ..+.......+  -...+.+     +++
T Consensus       189 ~p~gl~~s-------pdg~~lyv~~~~~~~~~~~--~i~~~~~~~~~-l~~~~~~~~~~~~~p--dgi~~d~-----~G~  251 (305)
T 3dr2_A          189 HPNGLAFS-------PDEQTLYVSQTPEQGHGSV--EITAFAWRDGA-LHDRRHFASVPDGLP--DGFCVDR-----GGW  251 (305)
T ss_dssp             SEEEEEEC-------TTSSEEEEEECCC---CCC--EEEEEEEETTE-EEEEEEEECCSSSCC--CSEEECT-----TSC
T ss_pred             CCcceEEc-------CCCCEEEEEecCCcCCCCC--EEEEEEecCCC-ccCCeEEEECCCCCC--CeEEECC-----CCC
Confidence            34568888       888866655433      4  56677766443 21  11110111111  1114566     677


Q ss_pred             EEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEE
Q psy3599         158 CVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLII  214 (223)
Q Consensus       158 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~  214 (223)
                      +.++ +.+| |.+|+..    ++.+..+..+. .+.+++|.++++.|..++.++..+
T Consensus       252 lwv~-~~~g-v~~~~~~----g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          252 LWSS-SGTG-VCVFDSD----GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             EEEC-CSSE-EEEECTT----SCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             EEEe-cCCc-EEEECCC----CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence            5544 4554 8899974    45566665444 578899999888777776654333

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.46  E-value=0.19  Score=38.19  Aligned_cols=102  Identities=13%  Similarity=0.098  Sum_probs=67.4

Q ss_pred             eEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccce
Q psy3599         104 TLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVN  183 (223)
Q Consensus       104 ~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~  183 (223)
                      .+.++.-.++  .+.++|..+.+.+.. ++.+ ....  .  .+++     ++..++.+..++.|.++|..+   .+.+.
T Consensus        77 ~lyv~t~~~~--~v~viD~~t~~v~~~-i~~g-~~~g--~--glt~-----Dg~~l~vs~gs~~l~viD~~t---~~v~~  140 (266)
T 2iwa_A           77 KLYQVVWLKN--IGFIYDRRTLSNIKN-FTHQ-MKDG--W--GLAT-----DGKILYGSDGTSILYEIDPHT---FKLIK  140 (266)
T ss_dssp             EEEEEETTCS--EEEEEETTTTEEEEE-EECC-SSSC--C--EEEE-----CSSSEEEECSSSEEEEECTTT---CCEEE
T ss_pred             EEEEEEecCC--EEEEEECCCCcEEEE-EECC-CCCe--E--EEEE-----CCCEEEEECCCCeEEEEECCC---CcEEE
Confidence            4444444666  788899998877664 4334 1222  2  2555     555555555688999999988   77666


Q ss_pred             eecccc-----cCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         184 KLQGHA-----CPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       184 ~~~~h~-----~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+.--.     ...+.+.|. ++...+....++.|.+-|..+++
T Consensus       141 ~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~  183 (266)
T 2iwa_A          141 KHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGT  183 (266)
T ss_dssp             EEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCC
T ss_pred             EEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCc
Confidence            665321     136778888 67666666568899999998875

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.46  E-value=0.0054  Score=49.18  Aligned_cols=91  Identities=12%  Similarity=-0.118  Sum_probs=64.7

Q ss_pred             EEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec----------CCCcEEEEEcccCcccccceee
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS----------EDSCVYFLDIQSKEHKNAVNKL  185 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs----------~dg~v~iwd~~~~~~~~~~~~~  185 (223)
                      .+.+.|..+++.+.. +..+...     ...++|     ++..++.+.          .++.|.+||..+   .+.+..+
T Consensus        47 ~vsvID~~t~~v~~~-i~vG~~P-----~i~~sp-----Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T---~~vv~~I  112 (368)
T 1mda_H           47 ENWVSCAGCGVTLGH-SLGAFLS-----LAVAGH-----SGSDFALASTSFARSAKGKRTDYVEVFDPVT---FLPIADI  112 (368)
T ss_dssp             EEEEEETTTTEEEEE-EEECTTC-----EEEECT-----TSSCEEEEEEEETTTTSSSEEEEEEEECTTT---CCEEEEE
T ss_pred             eEEEEECCCCeEEEE-EeCCCCC-----ceEECC-----CCCEEEEEcccccccccCCCCCEEEEEECCC---CCEEEEE
Confidence            466789999877764 3335443     235899     677777665          368899999999   8888887


Q ss_pred             cccc-------cCEEEEEEecCCCEEEEEeC--CCcEEE--eeCCC
Q psy3599         186 QGHA-------CPVLGVSFNYDESLLATSDY--QGLIIL--WSREK  220 (223)
Q Consensus       186 ~~h~-------~~v~~v~~~~~~~~l~s~s~--d~~i~i--wd~~~  220 (223)
                      ....       .....+.++|||..+..+..  +..+.+  +|+.+
T Consensus       113 ~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          113 ELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             EETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             ECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            5330       12456899999998888864  467888  88743

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.40  E-value=0.04  Score=48.35  Aligned_cols=116  Identities=9%  Similarity=0.026  Sum_probs=68.9

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeC-CC--eEEEEEecCCCc-eEEeeeeeccccCcceeEEEeeecCcccCCCcEEEE
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAA-NA--VCILKVLDKEGA-VQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVT  161 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~-~~--~~~v~i~d~~~~-~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~s  161 (223)
                      .+....||      ||||++|+.+.+ ++  ...+.++|+.++ ..+...+. ...     ....|+|     +++.|+.
T Consensus       175 ~~~~~~~S------~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-~~~-----~~~~Wsp-----Dg~~l~y  237 (751)
T 2xe4_A          175 DVMEVKPA------PPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-GTN-----GEIVWGP-----DHTSLFY  237 (751)
T ss_dssp             EEEEEEEC------TTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-EEC-----SCCEECS-----STTEEEE
T ss_pred             EEeeeEec------CCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-Cce-----eeEEEec-----CCCEEEE
Confidence            56677887      368888875442 21  225888899887 53321111 110     1125899     6776666


Q ss_pred             ecCC-----CcEEEEEcccCccccc--ceeec-ccccCEEEEEEecCCCEEEEEeC---CCcEEEeeCCCC
Q psy3599         162 GSED-----SCVYFLDIQSKEHKNA--VNKLQ-GHACPVLGVSFNYDESLLATSDY---QGLIILWSREKH  221 (223)
Q Consensus       162 gs~d-----g~v~iwd~~~~~~~~~--~~~~~-~h~~~v~~v~~~~~~~~l~s~s~---d~~i~iwd~~~~  221 (223)
                      ...|     ..|+.+++.+   +..  ...+. ........+.|+|||..|+..+.   ...|.++|+.++
T Consensus       238 ~~~d~~~~~~~v~~~~lgt---~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          238 VTKDETLRENKVWRHVMGK---LQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEECTTCCEEEEEEEETTS---CGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEECCCCCCCEEEEEECCC---CchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            5554     2577888876   332  12222 22345678899999998776552   345788888764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.35  E-value=0.11  Score=42.62  Aligned_cols=151  Identities=13%  Similarity=0.204  Sum_probs=86.3

Q ss_pred             cCCcEEEEEECC----CCceeeeeeeeecCCCCeeEEEEeecccc----cC--CCCeEEEEEe-CCCeEEEEEecCCCc-
Q psy3599          58 STGVIVSILCDD----LGRLSKGKRLVLSQDCPITCLSWRSWISR----EA--RDPTLLVNIA-ANAVCILKVLDKEGA-  125 (223)
Q Consensus        58 ~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~i~~l~~~~~~~~----~~--~~~~~l~~~~-~~~~~~v~i~d~~~~-  125 (223)
                      +...+..+..+|    -++++....+... +.....+.|+--.++    ..  .++++|+..+ .+.  .|.++|..+. 
T Consensus        41 ~~d~la~vDvdp~s~ty~~vi~~~~~p~~-gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~--~I~viD~~t~p  117 (462)
T 2ece_A           41 RADFIAVVDVNPKSETYSKIVHKVELPYI-NDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSS--RIYIIDTKPNP  117 (462)
T ss_dssp             CCCEEEEEECCTTSTTTTSEEEEEECSSS-CCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTC--CEEEEECCSCT
T ss_pred             CCCeEEEEECCCCCCCcceEEEEEECCCC-CCcccccchhhhhhhcccccCCCccCCEEEEccCCCC--eEEEEECCCCC
Confidence            345677777777    3555553333222 445555556210011    01  4566666544 555  6778887533 


Q ss_pred             ---eEEeeeee---c-cccCcceeEEEeeecCcccCCCcEEEEecCC------CcEEEEEcccCcccccceeeccccc--
Q psy3599         126 ---VQLKRKFN---V-NHKSSKYQVRSTFCPIMSFREGACVVTGSED------SCVYFLDIQSKEHKNAVNKLQGHAC--  190 (223)
Q Consensus       126 ---~~~~~~~~---~-~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~d------g~v~iwd~~~~~~~~~~~~~~~h~~--  190 (223)
                         +... ...   . ...+....-...+.|     ++ ++++...+      |.|.+.|..+   .+.+..+..-..  
T Consensus       118 ~~p~~~k-~ie~~~~~~~~g~s~Ph~~~~~p-----dG-i~Vs~~g~~~g~~~g~v~vlD~~T---~~v~~~~~~~~~~~  187 (462)
T 2ece_A          118 REPKIIK-VIEPEEVKKVSGYSRLHTVHCGP-----DA-IYISALGNEEGEGPGGILMLDHYS---FEPLGKWEIDRGDQ  187 (462)
T ss_dssp             TSCEEEE-EECHHHHHHHHCEEEEEEEEECS-----SC-EEEEEEEETTSCSCCEEEEECTTT---CCEEEECCSBCTTC
T ss_pred             CCceeee-eechhhcccccCCCcccceeECC-----Ce-EEEEcCCCcCCCCCCeEEEEECCC---CeEEEEEccCCCCc
Confidence               2222 210   0 001111112234667     67 66665555      7899999998   888887763222  


Q ss_pred             -CEEEEEEecCCCEEEEEe-------------------CCCcEEEeeCCCC
Q psy3599         191 -PVLGVSFNYDESLLATSD-------------------YQGLIILWSREKH  221 (223)
Q Consensus       191 -~v~~v~~~~~~~~l~s~s-------------------~d~~i~iwd~~~~  221 (223)
                       .-..+.|+|+++.+++..                   .+.+|.+||+.++
T Consensus       188 ~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~  238 (462)
T 2ece_A          188 YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR  238 (462)
T ss_dssp             CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred             cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence             234578899999888885                   3689999999764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.31  E-value=0.07  Score=43.79  Aligned_cols=106  Identities=12%  Similarity=0.112  Sum_probs=67.1

Q ss_pred             CCCeEEEEEeCC------CeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec-----------
Q psy3599         101 RDPTLLVNIAAN------AVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS-----------  163 (223)
Q Consensus       101 ~~~~~l~~~~~~------~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs-----------  163 (223)
                      |+| +++++..+      +  .+.+.|..+.+.+...- .+.....+.....|+|     +++.+++..           
T Consensus       147 pdG-i~Vs~~g~~~g~~~g--~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p-----~~~~mvsS~wg~p~~~~~g~  217 (462)
T 2ece_A          147 PDA-IYISALGNEEGEGPG--GILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNL-----PNEVLVSSEWAVPNTIEDGL  217 (462)
T ss_dssp             SSC-EEEEEEEETTSCSCC--EEEEECTTTCCEEEECC-SBCTTCCCCCCEEEET-----TTTEEEECBCCCHHHHTTCC
T ss_pred             CCe-EEEEcCCCcCCCCCC--eEEEEECCCCeEEEEEc-cCCCCccccceEEECC-----CCCEEEEccCcCcccccccc
Confidence            888 65555543      4  57788999887666432 2322221112234788     788888875           


Q ss_pred             --------CCCcEEEEEcccCcccccceeeccc-c-cCEEEEEE--ecCCCEEEEEe------CCCcEEEeeC
Q psy3599         164 --------EDSCVYFLDIQSKEHKNAVNKLQGH-A-CPVLGVSF--NYDESLLATSD------YQGLIILWSR  218 (223)
Q Consensus       164 --------~dg~v~iwd~~~~~~~~~~~~~~~h-~-~~v~~v~~--~~~~~~l~s~s------~d~~i~iwd~  218 (223)
                              .+..|.+||+.+   ++.+.++..- . .....+.|  +|++.++..++      .+++|.+|..
T Consensus       218 ~~~~~~~~~~d~V~v~D~~~---~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~  287 (462)
T 2ece_A          218 KLEHLKDRYGNRIHFWDLRK---RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY  287 (462)
T ss_dssp             CTTTHHHHSCCEEEEEETTT---TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred             chhhhhhccCCEEEEEECCC---CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence                    367899999998   7777776542 1 23455656  99998766665      4567766543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.29  E-value=0.1  Score=41.28  Aligned_cols=102  Identities=8%  Similarity=-0.041  Sum_probs=60.7

Q ss_pred             CeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccc
Q psy3599         103 PTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAV  182 (223)
Q Consensus       103 ~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~  182 (223)
                      +..+..++.++  .+..+|..+++.+....  . ...   +..  .|..   .+..++.++.++.++.+|..+   ++.+
T Consensus       103 ~~~v~v~~~~g--~l~a~d~~tG~~~W~~~--~-~~~---~~~--~p~~---~~~~v~v~~~~g~l~~~d~~t---G~~~  166 (376)
T 3q7m_A          103 GGHVYIGSEKA--QVYALNTSDGTVAWQTK--V-AGE---ALS--RPVV---SDGLVLIHTSNGQLQALNEAD---GAVK  166 (376)
T ss_dssp             TTEEEEEETTS--EEEEEETTTCCEEEEEE--C-SSC---CCS--CCEE---ETTEEEEECTTSEEEEEETTT---CCEE
T ss_pred             CCEEEEEcCCC--EEEEEECCCCCEEEEEe--C-CCc---eEc--CCEE---ECCEEEEEcCCCeEEEEECCC---CcEE
Confidence            34444555556  57778988887665431  1 111   111  1110   355777788899999999988   7766


Q ss_pred             eeecccccCE-----EEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         183 NKLQGHACPV-----LGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       183 ~~~~~h~~~v-----~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ..........     .....  .+..+..++.++.+..+|.++++
T Consensus       167 W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~  209 (376)
T 3q7m_A          167 WTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQ  209 (376)
T ss_dssp             EEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCC
T ss_pred             EEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCc
Confidence            6554322110     11112  24567778888999999988765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=96.29  E-value=0.16  Score=41.37  Aligned_cols=79  Identities=10%  Similarity=0.072  Sum_probs=54.4

Q ss_pred             EEEEeecccccCCCCeEEEEEe----------CCCeEEEEEecCCCceEEeeeeecc-c-----cCcceeEEEeeecCcc
Q psy3599          89 CLSWRSWISREARDPTLLVNIA----------ANAVCILKVLDKEGAVQLKRKFNVN-H-----KSSKYQVRSTFCPIMS  152 (223)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~~~----------~~~~~~v~i~d~~~~~~~~~~~~~~-h-----~~~~~~i~~~~s~~~~  152 (223)
                      .+.++       +|++.|..+.          .+.  .+.++|..+++.+.... .+ .     ...+  -...++|   
T Consensus       122 gia~S-------pDgk~lyVan~~~~~~~~G~~~~--~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P--~~~~~sp---  186 (426)
T 3c75_H          122 HPVAA-------EDGSFFAQASTVFERIARGKRTD--YVEVFDPVTFLPIADIE-LPDAPRFLVGTYQ--WMNALTP---  186 (426)
T ss_dssp             EEEEC-------TTSSCEEEEEEEEEETTEEEEEE--EEEEECTTTCCEEEEEE-ETTCCCCCBSCCG--GGSEECT---
T ss_pred             ceEEC-------CCCCEEEEEeccccccccCCCCC--EEEEEECCCCcEEEEEE-CCCccccccCCCc--ceEEEcC---
Confidence            89999       8998777654          234  68889999887665432 22 0     0111  2225888   


Q ss_pred             cCCCcEEEEecC--CCcEEEEEcccCcccccceeecc
Q psy3599         153 FREGACVVTGSE--DSCVYFLDIQSKEHKNAVNKLQG  187 (223)
Q Consensus       153 ~~~~~~l~sgs~--dg~v~iwd~~~~~~~~~~~~~~~  187 (223)
                        ++++++.+..  ++.|.+.|..+   .+.+..+..
T Consensus       187 --DGk~lyV~n~~~~~~VsVID~~t---~kvv~~I~v  218 (426)
T 3c75_H          187 --DNKNLLFYQFSPAPAVGVVDLEG---KTFDRMLDV  218 (426)
T ss_dssp             --TSSEEEEEECSSSCEEEEEETTT---TEEEEEEEC
T ss_pred             --CCCEEEEEecCCCCeEEEEECCC---CeEEEEEEc
Confidence              7888887764  57899999999   777776653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.27  E-value=0.13  Score=44.55  Aligned_cols=55  Identities=16%  Similarity=0.116  Sum_probs=40.9

Q ss_pred             CCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         164 EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       164 ~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+|.|..||..+   ++.+-..+.+. ......+...+.+++.++.|+.++.||.++++
T Consensus       436 ~~g~l~A~D~~t---G~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~  490 (668)
T 1kv9_A          436 VSGALLAWDPVK---QKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE  490 (668)
T ss_dssp             CEEEEEEEETTT---TEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ccceEEEEeCCC---CcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence            347899999999   88766665332 23333445578888889999999999999876

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.27  E-value=0.079  Score=45.92  Aligned_cols=114  Identities=13%  Similarity=0.023  Sum_probs=67.3

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEe-CCC-eEEEEEecCCCce-EEeeeeeccccCcceeEEEeeecCcccCCCcEEEEe
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIA-ANA-VCILKVLDKEGAV-QLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTG  162 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~-~~~-~~~v~i~d~~~~~-~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sg  162 (223)
                      ....+.|+       +||++|+... .+. -..+.++|+.++. ... .+ ..+....   ...+++.    ++.+++..
T Consensus       235 ~~~~~~~S-------pDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~-~l-~~~~~~~---~~~~~~~----g~~l~~~t  298 (693)
T 3iuj_A          235 RYVGATVT-------EDDRFLLISAANSTSGNRLYVKDLSQENAPLL-TV-QGDLDAD---VSLVDNK----GSTLYLLT  298 (693)
T ss_dssp             SEEEEEEC-------TTSCEEEEEEESSSSCCEEEEEETTSTTCCCE-EE-ECSSSSC---EEEEEEE----TTEEEEEE
T ss_pred             EEEEEEEc-------CCCCEEEEEEccCCCCcEEEEEECCCCCCceE-EE-eCCCCce---EEEEecc----CCEEEEEE
Confidence            35678899       9998876433 221 1157778876552 122 22 2444332   2224552    34555555


Q ss_pred             cCC---CcEEEEEcccCccccc--ceeecccccCEEEEEEecCCCEEEEEeC-CC--cEEEeeCCC
Q psy3599         163 SED---SCVYFLDIQSKEHKNA--VNKLQGHACPVLGVSFNYDESLLATSDY-QG--LIILWSREK  220 (223)
Q Consensus       163 s~d---g~v~iwd~~~~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~s~-d~--~i~iwd~~~  220 (223)
                      ..+   +.|..+|+.+   +..  ...+..|...+.  .|+++++.|+.... ++  .|++||+..
T Consensus       299 ~~~~~~~~l~~~d~~~---~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g  359 (693)
T 3iuj_A          299 NRDAPNRRLVTVDAAN---PGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG  359 (693)
T ss_dssp             CTTCTTCEEEEEETTS---CCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred             CCCCCCCEEEEEeCCC---CCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence            544   5788899887   433  345555666555  88999888776654 43  588888764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.01  E-value=0.19  Score=38.21  Aligned_cols=101  Identities=8%  Similarity=-0.013  Sum_probs=66.2

Q ss_pred             eEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccce
Q psy3599         104 TLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVN  183 (223)
Q Consensus       104 ~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~  183 (223)
                      .+.+..-.++  .+.++|.++.+.+.+. ..+..+..      +++     ++..|+.+..++.|.++|..+   .+.+.
T Consensus       107 ~Ly~ltw~~~--~v~V~D~~Tl~~~~ti-~~~~eGwG------Lt~-----Dg~~L~vSdGs~~l~~iDp~T---~~v~~  169 (268)
T 3nok_A          107 RLYQLTWTEG--LLFTWSGMPPQRERTT-RYSGEGWG------LCY-----WNGKLVRSDGGTMLTFHEPDG---FALVG  169 (268)
T ss_dssp             CEEEEESSSC--EEEEEETTTTEEEEEE-ECSSCCCC------EEE-----ETTEEEEECSSSEEEEECTTT---CCEEE
T ss_pred             EEEEEEccCC--EEEEEECCcCcEEEEE-eCCCceeE------Eec-----CCCEEEEECCCCEEEEEcCCC---CeEEE
Confidence            3333444566  7889999998777653 22322222      334     466666666688999999988   77776


Q ss_pred             eecccc-----cCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         184 KLQGHA-----CPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       184 ~~~~h~-----~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+....     ..++.+.|. +|.+.+..-.++.|.+-|.++++
T Consensus       170 ~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~  212 (268)
T 3nok_A          170 AVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGT  212 (268)
T ss_dssp             EEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB
T ss_pred             EEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCc
Confidence            665322     145667776 67666666567889998988875

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.83  E-value=0.32  Score=41.22  Aligned_cols=55  Identities=11%  Similarity=0.081  Sum_probs=37.8

Q ss_pred             CCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         164 EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       164 ~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+|.|..||..+   ++.+-.+... ..+........+..+..++.|+.++.||.++++
T Consensus       442 ~~g~l~a~D~~t---G~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~  496 (571)
T 2ad6_A          442 EMGQIRAFDLTT---GKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             CCEEEEEECTTT---CCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CCCeEEEEECCC---CCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence            357899999988   7766665422 222222223346677778899999999999886

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=95.74  E-value=0.062  Score=46.60  Aligned_cols=77  Identities=13%  Similarity=0.063  Sum_probs=51.4

Q ss_pred             EEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccc-cCEEE
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHA-CPVLG  194 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~-~~v~~  194 (223)
                      .+..||+.+++.+...   .+....  ....+..     .+.+++.|+.||.+++||..+   ++.+..+.... ....-
T Consensus       458 ~l~A~D~~tG~~~W~~---~~~~~~--~~g~~~~-----~g~~v~~g~~dg~l~a~D~~t---G~~lw~~~~~~~~~~~p  524 (677)
T 1kb0_A          458 RLLAWDPVAQKAAWSV---EHVSPW--NGGTLTT-----AGNVVFQGTADGRLVAYHAAT---GEKLWEAPTGTGVVAAP  524 (677)
T ss_dssp             EEEEEETTTTEEEEEE---EESSSC--CCCEEEE-----TTTEEEEECTTSEEEEEETTT---CCEEEEEECSSCCCSCC
T ss_pred             EEEEEeCCCCcEEeec---CCCCCC--cCcceEe-----CCCEEEEECCCCcEEEEECCC---CceeeeeeCCCCcccCC
Confidence            6788899998776653   222221  1113444     577888899999999999999   89888886433 22334


Q ss_pred             EEEecCCCEEE
Q psy3599         195 VSFNYDESLLA  205 (223)
Q Consensus       195 v~~~~~~~~l~  205 (223)
                      +.|..+|..++
T Consensus       525 ~~y~~~G~~~v  535 (677)
T 1kb0_A          525 STYMVDGRQYV  535 (677)
T ss_dssp             EEEEETTEEEE
T ss_pred             EEEEeCCEEEE
Confidence            56667776443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=95.67  E-value=0.045  Score=47.56  Aligned_cols=76  Identities=14%  Similarity=0.048  Sum_probs=51.4

Q ss_pred             EEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeeccccc-CEEE
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHAC-PVLG  194 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~-~v~~  194 (223)
                      .+..||+.+++.+...   .+....  ....+..     .+.+++.|+.||.++.||.++   ++.+.+++.... ...-
T Consensus       456 ~l~A~D~~tG~~~W~~---~~~~~~--~~g~~~t-----agglvf~gt~dg~l~a~D~~t---G~~lw~~~~~~~~~~~p  522 (689)
T 1yiq_A          456 KLIAWDPVKQQAAWEV---PYVTIF--NGGTLST-----AGNLVFEGSADGRVIAYAADT---GEKLWEQPAASGVMAAP  522 (689)
T ss_dssp             EEEEEETTTTEEEEEE---EESSSC--CCCEEEE-----TTTEEEEECTTSEEEEEETTT---CCEEEEEECSSCCCSCC
T ss_pred             eEEEEECCCCCeEeEc---cCCCCc--cCccceE-----CCCEEEEECCCCcEEEEECCC---CccceeeeCCCCcccCc
Confidence            6888999998776653   222211  1123444     578999999999999999999   998888765432 2234


Q ss_pred             EEEecCCCEE
Q psy3599         195 VSFNYDESLL  204 (223)
Q Consensus       195 v~~~~~~~~l  204 (223)
                      +.|..+|...
T Consensus       523 ~ty~~~G~qy  532 (689)
T 1yiq_A          523 VTYSVDGEQY  532 (689)
T ss_dssp             EEEEETTEEE
T ss_pred             eEEEECCEEE
Confidence            6677777643

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=95.60  E-value=0.52  Score=35.70  Aligned_cols=101  Identities=14%  Similarity=0.104  Sum_probs=65.3

Q ss_pred             eEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccce
Q psy3599         104 TLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVN  183 (223)
Q Consensus       104 ~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~  183 (223)
                      .+.+..-.++  .+.++|.++.+.+... ..+..+..      +++     ++..|+.+..++.|.++|..+   .+.+.
T Consensus        98 ~ly~ltw~~~--~v~v~D~~t~~~~~ti-~~~~eG~g------lt~-----dg~~L~~SdGs~~i~~iDp~T---~~v~~  160 (262)
T 3nol_A           98 KIVGLTWKNG--LGFVWNIRNLRQVRSF-NYDGEGWG------LTH-----NDQYLIMSDGTPVLRFLDPES---LTPVR  160 (262)
T ss_dssp             EEEEEESSSS--EEEEEETTTCCEEEEE-ECSSCCCC------EEE-----CSSCEEECCSSSEEEEECTTT---CSEEE
T ss_pred             EEEEEEeeCC--EEEEEECccCcEEEEE-ECCCCceE------Eec-----CCCEEEEECCCCeEEEEcCCC---CeEEE
Confidence            3333444566  7889999988776643 22322222      344     566666655577899999998   77766


Q ss_pred             eecccc-----cCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         184 KLQGHA-----CPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       184 ~~~~h~-----~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+....     ..++.+.|. +|...+..-.++.|.+-|.++++
T Consensus       161 ~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~  203 (262)
T 3nol_A          161 TITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGK  203 (262)
T ss_dssp             EEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCB
T ss_pred             EEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCc
Confidence            654321     235567776 67766666568889988988775

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=95.58  E-value=0.23  Score=38.01  Aligned_cols=110  Identities=13%  Similarity=0.094  Sum_probs=62.3

Q ss_pred             CCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEec
Q psy3599          85 CPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGS  163 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs  163 (223)
                      ..+.++...       +++.+.+.+.+++   +..++.. +..+... . .....   ... ...+      +..|..++
T Consensus       215 ~~~~~~~~~-------~~g~l~v~t~~~g---l~~~~~~-g~~~~~~-~-~~~~~---~~~~~~~~------~g~l~v~t  272 (330)
T 3hxj_A          215 WTVTRPAIS-------EDGTIYVTSLDGH---LYAINPD-GTEKWRF-K-TGKRI---ESSPVIGN------TDTIYFGS  272 (330)
T ss_dssp             CCCSCCEEC-------TTSCEEEEETTTE---EEEECTT-SCEEEEE-E-CSSCC---CSCCEECT------TSCEEEEC
T ss_pred             cceeceEEC-------CCCeEEEEcCCCe---EEEECCC-CCEeEEe-e-CCCCc---cccceEcC------CCeEEEec
Confidence            456666666       6777666554555   3444654 4344322 1 11111   111 2332      44566678


Q ss_pred             CCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         164 EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       164 ~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      .+|.+..+|. +   ++.+..+......+.++...+++.+ ..++.+|.+++...+..
T Consensus       273 ~~ggl~~~d~-~---g~~~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          273 YDGHLYAINP-D---GTEKWNFETGSWIIATPVIDENGTI-YFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             TTCEEEEECT-T---SCEEEEEECSSCCCSCCEECTTCCE-EEECTTSCEEEEEC---
T ss_pred             CCCCEEEECC-C---CcEEEEEEcCCccccceEEcCCCEE-EEEcCCCeEEEEecccc
Confidence            8888999985 5   5555555444455666776677774 45778999998876543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=95.40  E-value=0.58  Score=35.00  Aligned_cols=102  Identities=13%  Similarity=0.017  Sum_probs=64.5

Q ss_pred             CeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccc
Q psy3599         103 PTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAV  182 (223)
Q Consensus       103 ~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~  182 (223)
                      +.+.+..-.++  .+.++|.++.+.+.+. +.+..+.    .  +++     ++..|+.+..++.|.++|..+   .+.+
T Consensus        75 ~~ly~ltw~~~--~v~v~D~~tl~~~~ti-~~~~~Gw----g--lt~-----dg~~L~vSdgs~~l~~iDp~t---~~~~  137 (243)
T 3mbr_X           75 DRLIQLTWRNH--EGFVYDLATLTPRARF-RYPGEGW----A--LTS-----DDSHLYMSDGTAVIRKLDPDT---LQQV  137 (243)
T ss_dssp             TEEEEEESSSS--EEEEEETTTTEEEEEE-ECSSCCC----E--EEE-----CSSCEEEECSSSEEEEECTTT---CCEE
T ss_pred             CEEEEEEeeCC--EEEEEECCcCcEEEEE-eCCCCce----E--Eee-----CCCEEEEECCCCeEEEEeCCC---CeEE
Confidence            34444444566  7889999998777643 3232222    2  334     455555555688899999998   7776


Q ss_pred             eeecccc-----cCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         183 NKLQGHA-----CPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       183 ~~~~~h~-----~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      ..++-..     ..++.+.|. +|..++..-.+..|.+-|.++++
T Consensus       138 ~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~  181 (243)
T 3mbr_X          138 GSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGK  181 (243)
T ss_dssp             EEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCB
T ss_pred             EEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCC
Confidence            6665322     245666665 56666655567788888888765

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=95.39  E-value=0.045  Score=43.77  Aligned_cols=52  Identities=2%  Similarity=-0.071  Sum_probs=41.7

Q ss_pred             cEEEEEcccCcccccceeecccccCEEEEEEecCCC-EEEEEe-CCCcEEEeeCCCCC
Q psy3599         167 CVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDES-LLATSD-YQGLIILWSREKHE  222 (223)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s-~d~~i~iwd~~~~~  222 (223)
                      .+.++|..+   .+.+..+.... ....+.|+|++. .+++.. .++.|.++|+.+.+
T Consensus       295 ~~~ViD~~t---~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          295 NTSSVTASV---GQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EEEEEESSS---CCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             CEEEEECCC---CeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence            466999999   88888776543 578999999987 566666 59999999998764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=95.20  E-value=0.41  Score=36.60  Aligned_cols=105  Identities=12%  Similarity=0.144  Sum_probs=58.4

Q ss_pred             CCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEec
Q psy3599          85 CPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGS  163 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs  163 (223)
                      ..+.++...       +++.+++ ++.++  .+..+|.. +..+... . .....   +.. ...+     ++.+++ ++
T Consensus       137 ~~~~~~~~~-------~~g~l~v-gt~~~--~l~~~d~~-g~~~~~~-~-~~~~~---~~~~~~d~-----~g~l~v-~t  194 (330)
T 3hxj_A          137 AIYATPIVS-------EDGTIYV-GSNDN--YLYAINPD-GTEKWRF-K-TNDAI---TSAASIGK-----DGTIYF-GS  194 (330)
T ss_dssp             CCCSCCEEC-------TTSCEEE-ECTTS--EEEEECTT-SCEEEEE-E-CSSCC---CSCCEECT-----TCCEEE-ES
T ss_pred             ceeeeeEEc-------CCCEEEE-EcCCC--EEEEECCC-CCEeEEE-e-cCCCc---eeeeEEcC-----CCEEEE-Ee
Confidence            344555555       5777555 44445  56677887 5444332 1 11111   222 2333     455544 44


Q ss_pred             CCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeC
Q psy3599         164 EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       164 ~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                        +.+..+| .+   ++.+.........+.++...+++.+.+ ++.++.+..+|.
T Consensus       195 --~~l~~~d-~~---g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~  242 (330)
T 3hxj_A          195 --DKVYAIN-PD---GTEKWNFYAGYWTVTRPAISEDGTIYV-TSLDGHLYAINP  242 (330)
T ss_dssp             --SSEEEEC-TT---SCEEEEECCSSCCCSCCEECTTSCEEE-EETTTEEEEECT
T ss_pred             --CEEEEEC-CC---CcEEEEEccCCcceeceEECCCCeEEE-EcCCCeEEEECC
Confidence              7788899 55   555555554445577777777776444 455667777764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.06  E-value=0.83  Score=37.25  Aligned_cols=116  Identities=19%  Similarity=0.243  Sum_probs=70.8

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCc---------eEEeeeeeccc-----cCcceeEEEeeecCc
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGA---------VQLKRKFNVNH-----KSSKYQVRSTFCPIM  151 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~---------~~~~~~~~~~h-----~~~~~~i~~~~s~~~  151 (223)
                      .|..+..+       |+|.+||..+...+..+.+-+....         .... .+..+.     ...+  ....|+|.+
T Consensus        67 ~i~qlvlS-------psG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~-ty~l~~~~~~~~s~I--~qVlWHPl~  136 (452)
T 3pbp_A           67 DTFHVISS-------TSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIF-HYSIDEEEVGPKSSI--KKVLFHPKS  136 (452)
T ss_dssp             TTCEEEEC-------TTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEE-EEEGGGCC--CCCCE--EEEEECTTB
T ss_pred             ceeEEEEC-------CCCCEEEEecCCeEEEEEecCccccCccccccccccee-EEEcCCcccCCCCce--eEEEecccc
Confidence            67889999       9999999988877555544311110         0111 222232     2222  334899964


Q ss_pred             ccCCCcEEEEecCCCcEEEEEcccCcccccceeec---------ccccCEEEEEEecCCCEEEEEe--CCCcEEE
Q psy3599         152 SFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQ---------GHACPVLGVSFNYDESLLATSD--YQGLIIL  215 (223)
Q Consensus       152 ~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~---------~h~~~v~~v~~~~~~~~l~s~s--~d~~i~i  215 (223)
                      ..  +..|++-..|+.|++||+.... .++. .++         .....|.+++|.+++-.|-..+  .+|.|+-
T Consensus       137 ~~--ds~LVVLtsD~~Ir~yDl~~s~-~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          137 YR--DSCIVVLKEDDTITMFDILNSQ-EKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             GG--GCEEEEEETTSCEEEEETTCTT-SCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             CC--CCeEEEEecCCEEEEEEcccCC-CCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            33  6688888999999999998611 2222 221         2225688999988776555533  6676653

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=94.70  E-value=0.08  Score=44.92  Aligned_cols=106  Identities=16%  Similarity=0.096  Sum_probs=65.0

Q ss_pred             CCeeEEEEeecccccCCCCeEEEEEe-CCCeEEEEEecCCCceE-----------EeeeeeccccCcceeEEEeeecCcc
Q psy3599          85 CPITCLSWRSWISREARDPTLLVNIA-ANAVCILKVLDKEGAVQ-----------LKRKFNVNHKSSKYQVRSTFCPIMS  152 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~v~i~d~~~~~~-----------~~~~~~~~h~~~~~~i~~~~s~~~~  152 (223)
                      ....++.++       |||+++++++ .+.  .+.++|..+...           +......|  ..+  ...+|+|   
T Consensus       277 ~~PhGv~~s-------PDGk~v~V~~~~s~--~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG--~gP--~h~aF~~---  340 (595)
T 1fwx_A          277 NNPHGCNMA-------PDKKHLCVAGKLSP--TVTVLDVTRFDAVFYENADPRSAVVAEPELG--LGP--LHTAFDG---  340 (595)
T ss_dssp             SSCCCEEEC-------TTSSEEEEECTTSS--BEEEEEGGGHHHHHHSCCCGGGGEEECCBCC--SCE--EEEEECT---
T ss_pred             CCceEEEEc-------CCCCEEEEeCCCCC--eEEEEECcccccccccccCcccceEEEcCCC--CCc--ceEEECC---
Confidence            345678888       9999888766 444  678888875421           11111112  112  6668999   


Q ss_pred             cCCCcEEEEecCCCcEEEEEcccCc-------ccccceeecccccCE-----EEEEEecCCCEEEEEe
Q psy3599         153 FREGACVVTGSEDSCVYFLDIQSKE-------HKNAVNKLQGHACPV-----LGVSFNYDESLLATSD  208 (223)
Q Consensus       153 ~~~~~~l~sgs~dg~v~iwd~~~~~-------~~~~~~~~~~h~~~v-----~~v~~~~~~~~l~s~s  208 (223)
                        +|...++.-.|+.|.+||+....       ..+.+.++..|-.+-     ..+..+|||.+|+++.
T Consensus       341 --dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N  406 (595)
T 1fwx_A          341 --RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  406 (595)
T ss_dssp             --TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             --CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence              78666677779999999987610       023455555443321     2224478999988876

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=94.65  E-value=0.65  Score=39.91  Aligned_cols=109  Identities=13%  Similarity=0.079  Sum_probs=63.8

Q ss_pred             CCeEEEEEeCC---------CeEEEEEecCCCceEEee-eeeccccCcceeEEEeeecCcccCCCcEEEEecC-CCcEEE
Q psy3599         102 DPTLLVNIAAN---------AVCILKVLDKEGAVQLKR-KFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE-DSCVYF  170 (223)
Q Consensus       102 ~~~~l~~~~~~---------~~~~v~i~d~~~~~~~~~-~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~-dg~v~i  170 (223)
                      ++.+++.|+.+         ....+.+||+.++..... .+...+....  ...++.+     ++.+++.|+. +..+.+
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~--~~~~~~~-----~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFC--PGISMDG-----NGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSS--CEEEECT-----TSCEEEECSSSTTCEEE
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCcc--ccccCCC-----CCCEEEeCCCCCCceEE
Confidence            88888887632         233578899887642211 1111111110  1123445     7889999985 457999


Q ss_pred             EEcccCcccccc--eeecccccCEEEEEEecCCCEEEEEe-CC-----CcEEEeeCCCC
Q psy3599         171 LDIQSKEHKNAV--NKLQGHACPVLGVSFNYDESLLATSD-YQ-----GLIILWSREKH  221 (223)
Q Consensus       171 wd~~~~~~~~~~--~~~~~h~~~v~~v~~~~~~~~l~s~s-~d-----~~i~iwd~~~~  221 (223)
                      ||..+   .+..  ..+..... -.++...+++.+++.|+ .+     ..+.+||..+.
T Consensus       270 yd~~t---~~W~~~~~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          270 YDSSS---DSWIPGPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             EEGGG---TEEEECCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             ecCcC---CceeECCCCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            99887   4322  22222111 23445567899999998 34     56899998764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=94.09  E-value=0.73  Score=39.81  Aligned_cols=59  Identities=8%  Similarity=0.086  Sum_probs=36.5

Q ss_pred             EEEecCCCceEEeeeeeccccCcc-----eeEEEeeecCcccCCCc---EEEEecCCCcEEEEEcccCcccccce
Q psy3599         117 LKVLDKEGAVQLKRKFNVNHKSSK-----YQVRSTFCPIMSFREGA---CVVTGSEDSCVYFLDIQSKEHKNAVN  183 (223)
Q Consensus       117 v~i~d~~~~~~~~~~~~~~h~~~~-----~~i~~~~s~~~~~~~~~---~l~sgs~dg~v~iwd~~~~~~~~~~~  183 (223)
                      +..+|..+++.+.......|....     ..+...+..     ++.   .++.++.+|.++++|..+   ++++.
T Consensus       272 v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-----~G~~~~~v~~~~~~G~l~~lD~~t---G~~l~  338 (668)
T 1kv9_A          272 ILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-----DGKPRKVLMQAPKNGFFYVLDRTN---GKLIS  338 (668)
T ss_dssp             EEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-----TTEEEEEEEECCTTSEEEEEETTT---CCEEE
T ss_pred             EEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc-----CCcEEEEEEEECCCCEEEEEECCC---CCEec
Confidence            667799999877654321232111     002212222     454   688999999999999998   77663

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=93.93  E-value=0.75  Score=39.08  Aligned_cols=66  Identities=15%  Similarity=0.242  Sum_probs=47.3

Q ss_pred             eeecCcccCCCcEEE-EecCCCcEEEEEcccCcccc------------cceeecccccCEEEEEEecCCCEEEEEeCCCc
Q psy3599         146 TFCPIMSFREGACVV-TGSEDSCVYFLDIQSKEHKN------------AVNKLQGHACPVLGVSFNYDESLLATSDYQGL  212 (223)
Q Consensus       146 ~~s~~~~~~~~~~l~-sgs~dg~v~iwd~~~~~~~~------------~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~  212 (223)
                      .++|     ||++++ ++..+..|.++|+.+   .+            .+..+.. ......++|+|+|...++.-.|+.
T Consensus       283 ~~sP-----DGk~v~V~~~~s~~VsVid~~~---~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsq  353 (595)
T 1fwx_A          283 NMAP-----DKKHLCVAGKLSPTVTVLDVTR---FDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQ  353 (595)
T ss_dssp             EECT-----TSSEEEEECTTSSBEEEEEGGG---HHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTSEEEEEETTTTE
T ss_pred             EEcC-----CCCEEEEeCCCCCeEEEEECcc---cccccccccCcccceEEEcCC-CCCcceEEECCCCeEEEEEecCCc
Confidence            5888     677555 555678999999997   42            2233332 235788999999965566678999


Q ss_pred             EEEeeCCC
Q psy3599         213 IILWSREK  220 (223)
Q Consensus       213 i~iwd~~~  220 (223)
                      |..||+.+
T Consensus       354 V~kwdi~~  361 (595)
T 1fwx_A          354 VVKWNIED  361 (595)
T ss_dssp             EEEEEHHH
T ss_pred             EEEEEhhH
Confidence            99999764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=93.78  E-value=0.32  Score=41.37  Aligned_cols=54  Identities=15%  Similarity=0.138  Sum_probs=37.3

Q ss_pred             CCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         165 DSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       165 dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      +|.|..||..+   ++.+-..+... ++..-.....+.+++.++.|+.++.||.++++
T Consensus       465 ~G~l~A~D~~t---G~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~  518 (582)
T 1flg_A          465 VGSLRAMDPVS---GKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             SEEEEEECTTT---CCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cceEEEEECCC---CCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCC
Confidence            57899999998   77665554322 22211122246778889999999999999886

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=92.76  E-value=4.7  Score=35.31  Aligned_cols=141  Identities=15%  Similarity=0.169  Sum_probs=79.9

Q ss_pred             CCcEEEEEECCCCceeeee-------------eee-e-c-------CCCCeeEEEEeecccccCCCCeEEEEEeCCCeEE
Q psy3599          59 TGVIVSILCDDLGRLSKGK-------------RLV-L-S-------QDCPITCLSWRSWISREARDPTLLVNIAANAVCI  116 (223)
Q Consensus        59 ~~~i~~~~~~~~~~~~~~~-------------~~~-~-~-------~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (223)
                      .+.|.++..|.+|.++...             .+. . +       ....|.++...       .++.+-+....++   
T Consensus       309 ~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d-------~~g~lWiGt~~~G---  378 (795)
T 4a2l_A          309 QRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED-------KDKNLWIGTNDGG---  378 (795)
T ss_dssp             SSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC-------TTSCEEEEESSSC---
T ss_pred             CCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC-------CCCCEEEEECCCC---
Confidence            3567788888877776532             000 0 0       12357888877       7777666544556   


Q ss_pred             EEEecCCCceEEeeeeec-----cccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeec----
Q psy3599         117 LKVLDKEGAVQLKRKFNV-----NHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQ----  186 (223)
Q Consensus       117 v~i~d~~~~~~~~~~~~~-----~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~----  186 (223)
                      +..++..++....-....     +-....  +.+ ...+     ++..|..|+.++-+..+|..+   ++......    
T Consensus       379 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~--v~~i~~d~-----~g~~lWigt~~~Gl~~~d~~~---~~~~~~~~~~~~  448 (795)
T 4a2l_A          379 LNLYNPITQRFTSYTLQEDESARGIGSNN--IKAVYVDE-----KKSLVYIGTHAGGLSILHRNS---GQVENFNQRNSQ  448 (795)
T ss_dssp             EEEECTTTCCEEEECCC------CCSCSC--EEEEEEET-----TTTEEEEEETTTEEEEEETTT---CCEEEECTTTSC
T ss_pred             eEEEcCCCCcEEEEecCCCCcccCCCCcc--EEEEEEcC-----CCCEEEEEeCcCceeEEeCCC---CcEEEeecCCCC
Confidence            456677665432211000     001111  555 4444     566455677766689999877   44322111    


Q ss_pred             ccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         187 GHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       187 ~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      .....|.++...+++.+.+... + -+.+||..++
T Consensus       449 l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~  481 (795)
T 4a2l_A          449 LVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQR  481 (795)
T ss_dssp             CSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTT
T ss_pred             cCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCC
Confidence            1345789998888888665554 4 4778887653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=92.67  E-value=3.4  Score=33.47  Aligned_cols=66  Identities=14%  Similarity=0.141  Sum_probs=43.9

Q ss_pred             eeecCcccCCCcEEEEecCCCcEEEEEcccCccccc--ceeecccccCEEEEEEecCCC-EEEEEeCCCcEEEeeCC
Q psy3599         146 TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNA--VNKLQGHACPVLGVSFNYDES-LLATSDYQGLIILWSRE  219 (223)
Q Consensus       146 ~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~--~~~~~~h~~~v~~v~~~~~~~-~l~s~s~d~~i~iwd~~  219 (223)
                      +++|.    ++.++++-...+.|+.++...   +..  +..... ......++|+|+++ ++++-...+.|..++..
T Consensus       232 avdp~----~g~lyv~d~~~~~V~~~~~~~---~~~~~~~~~~~-~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          232 ETHPI----NGELYFNSWNAGQVFRYDFTT---QETTPLFTIQD-SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EECTT----TCCEEEEETTTTEEEEEETTT---TEEEEEEECSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEeCC----CCEEEEEECCCCEEEEEECCC---CcEEEEEEcCC-CCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            46663    467777776778899999876   433  222221 23457899999999 45555567888887754

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=92.39  E-value=3.2  Score=32.54  Aligned_cols=117  Identities=12%  Similarity=0.086  Sum_probs=70.0

Q ss_pred             CeeEEEE---eecccccCCCCeEEEEEeC-------------CCeEEEEEecCC---CceEEeeeeeccccC--------
Q psy3599          86 PITCLSW---RSWISREARDPTLLVNIAA-------------NAVCILKVLDKE---GAVQLKRKFNVNHKS--------  138 (223)
Q Consensus        86 ~i~~l~~---~~~~~~~~~~~~~l~~~~~-------------~~~~~v~i~d~~---~~~~~~~~~~~~h~~--------  138 (223)
                      .+..|.|   .       +++.++++...             +.  .+..+|+.   +++.+...--.+...        
T Consensus        64 ~~sGl~~~~~D-------~~grL~vv~~~~~af~~~g~~~~g~~--~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~  134 (334)
T 2p9w_A           64 QMSGLSLLTHD-------NSKRLFAVMKNAKSFNFADQSSHGAS--SFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGK  134 (334)
T ss_dssp             EEEEEEESSSS-------SCCEEEEEEEETTTTCTTSCCSSSCC--EEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSS
T ss_pred             eeeEEEEeccC-------CCCcEEEEEcccccccccccccCCCC--EEEEEcCCcCCCCCEEEEecCccccccccccccc
Confidence            3578888   6       66888875331             33  67778887   554433210001111        


Q ss_pred             c-ceeEEEeeecCcccCCCcEEEEecCC-CcEEEEEcccCcccccceeec------ccccCEEEEEEecCCCEEEEEeCC
Q psy3599         139 S-KYQVRSTFCPIMSFREGACVVTGSED-SCVYFLDIQSKEHKNAVNKLQ------GHACPVLGVSFNYDESLLATSDYQ  210 (223)
Q Consensus       139 ~-~~~i~~~~s~~~~~~~~~~l~sgs~d-g~v~iwd~~~~~~~~~~~~~~------~h~~~v~~v~~~~~~~~l~s~s~d  210 (223)
                      . ......+..+     +|+..++++.- +.|...+...   . .+..+.      ......+.|+++|++..|+....+
T Consensus       135 ~~~~~nDvavD~-----~GnaYVt~s~~~~~I~rV~pdG---~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~  205 (334)
T 2p9w_A          135 RPFGVVQSAQDR-----DGNSYVAFALGMPAIARVSADG---K-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGP  205 (334)
T ss_dssp             CCEEEEEEEECT-----TSCEEEEEEESSCEEEEECTTS---C-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSS
T ss_pred             cccCCceeEECC-----CCCEEEeCCCCCCeEEEEeCCC---C-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCC
Confidence            1 1113335677     78988888877 7766555543   2 122111      112235689999999988888779


Q ss_pred             CcEEEeeCCC
Q psy3599         211 GLIILWSREK  220 (223)
Q Consensus       211 ~~i~iwd~~~  220 (223)
                      +.+.-+|+++
T Consensus       206 g~L~~fD~~~  215 (334)
T 2p9w_A          206 RALTAFDVSK  215 (334)
T ss_dssp             SSEEEEECSS
T ss_pred             CeEEEEcCCC
Confidence            9999999763

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=92.34  E-value=1.3  Score=37.76  Aligned_cols=55  Identities=7%  Similarity=0.007  Sum_probs=36.5

Q ss_pred             CCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCCC
Q psy3599         164 EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHE  222 (223)
Q Consensus       164 ~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~~  222 (223)
                      .+|.+..||..+   ++.+-..+. ..++..-.....+.++..++.|+.++.||.++++
T Consensus       451 ~~G~l~A~D~~t---G~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~  505 (599)
T 1w6s_A          451 GLGQIKAYNAIT---GDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD  505 (599)
T ss_dssp             CCEEEEEECTTT---CCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CcCeEEEEECCC---CCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCC
Confidence            347888899888   776655532 1112111122356777778999999999999886

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=92.31  E-value=3.5  Score=33.61  Aligned_cols=70  Identities=7%  Similarity=0.095  Sum_probs=48.2

Q ss_pred             EeeecCcccCCCcEEEEecCCCcEEEEEcccCccc-c--------cceeecc------cccCEEEEEEecC---CCEEEE
Q psy3599         145 STFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHK-N--------AVNKLQG------HACPVLGVSFNYD---ESLLAT  206 (223)
Q Consensus       145 ~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~-~--------~~~~~~~------h~~~v~~v~~~~~---~~~l~s  206 (223)
                      ...+|     +|++|+.-+.. .|.|-.+...... .        ..+.+.-      ...+|..+.|+|-   +..|++
T Consensus        71 lvlSp-----sG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV  144 (452)
T 3pbp_A           71 VISST-----SGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV  144 (452)
T ss_dssp             EEECT-----TSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred             EEECC-----CCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence            36788     78888877554 6888887731000 0        0112221      2467999999995   678999


Q ss_pred             EeCCCcEEEeeCCC
Q psy3599         207 SDYQGLIILWSREK  220 (223)
Q Consensus       207 ~s~d~~i~iwd~~~  220 (223)
                      -..|+.||+||+..
T Consensus       145 LtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          145 LKEDDTITMFDILN  158 (452)
T ss_dssp             EETTSCEEEEETTC
T ss_pred             EecCCEEEEEEccc
Confidence            99999999999975

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=91.72  E-value=3.3  Score=31.13  Aligned_cols=116  Identities=11%  Similarity=0.289  Sum_probs=65.4

Q ss_pred             CCCeeEEEEeecccccCCCCe-EEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEE
Q psy3599          84 DCPITCLSWRSWISREARDPT-LLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVT  161 (223)
Q Consensus        84 ~~~i~~l~~~~~~~~~~~~~~-~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~s  161 (223)
                      ...+..++|+       +++. ++++...+.  .+...|.. +..+... +.+-...   ... ++.+     ++.++++
T Consensus        26 ~~~lSGla~~-------~~~~~L~aV~d~~~--~I~~ld~~-g~v~~~i-~l~g~~D---~EGIa~~~-----~g~~~vs   86 (255)
T 3qqz_A           26 TNNISSLTWS-------AQSNTLFSTINKPA--AIVEMTTN-GDLIRTI-PLDFVKD---LETIEYIG-----DNQFVIS   86 (255)
T ss_dssp             CSCEEEEEEE-------TTTTEEEEEEETTE--EEEEEETT-CCEEEEE-ECSSCSS---EEEEEECS-----TTEEEEE
T ss_pred             ccCcceeEEe-------CCCCEEEEEECCCC--eEEEEeCC-CCEEEEE-ecCCCCC---hHHeEEeC-----CCEEEEE
Confidence            4569999999       6655 444444444  45555776 5555433 2121122   222 4555     5666666


Q ss_pred             ecCCCcEEEEEcccCcccccceee------cccccCEEEEEEecCCCEEEEEeCCCcEEEeeC
Q psy3599         162 GSEDSCVYFLDIQSKEHKNAVNKL------QGHACPVLGVSFNYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       162 gs~dg~v~iwd~~~~~~~~~~~~~------~~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      .-.++.+.++++........+...      ...+.....++|+|.++.|.++.......+|.+
T Consensus        87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~  149 (255)
T 3qqz_A           87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV  149 (255)
T ss_dssp             ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred             ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence            556678888887652100111111      113345689999999877777765555555544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=91.54  E-value=3.2  Score=30.72  Aligned_cols=115  Identities=9%  Similarity=-0.040  Sum_probs=65.1

Q ss_pred             CCeeEEEEeecccccCCC-CeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec
Q psy3599          85 CPITCLSWRSWISREARD-PTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS  163 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs  163 (223)
                      ..+..++|+       ++ +.++++...++  .+..++..++.. ..... .....+  -..++.+.    .+.++++-.
T Consensus        36 ~~~~gi~~d-------~~~~~ly~~d~~~~--~I~~~~~~g~~~-~~~~~-~~~~~p--~~ia~d~~----~~~lyv~d~   98 (267)
T 1npe_A           36 KVIIGLAFD-------CVDKVVYWTDISEP--SIGRASLHGGEP-TTIIR-QDLGSP--EGIALDHL----GRTIFWTDS   98 (267)
T ss_dssp             EEEEEEEEE-------TTTTEEEEEETTTT--EEEEEESSSCCC-EEEEC-TTCCCE--EEEEEETT----TTEEEEEET
T ss_pred             CcEEEEEEe-------cCCCEEEEEECCCC--EEEEEecCCCCc-EEEEE-CCCCCc--cEEEEEec----CCeEEEEEC
Confidence            346789998       64 45555555566  677778765532 22211 111221  33367773    355666666


Q ss_pred             CCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeC---CCcEEEeeCC
Q psy3599         164 EDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDY---QGLIILWSRE  219 (223)
Q Consensus       164 ~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~---d~~i~iwd~~  219 (223)
                      ..+.|.+++...   ..........-.....++++|++..|..+..   .+.|..+++.
T Consensus        99 ~~~~I~~~~~~g---~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d  154 (267)
T 1npe_A           99 QLDRIEVAKMDG---TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD  154 (267)
T ss_dssp             TTTEEEEEETTS---CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred             CCCEEEEEEcCC---CCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence            678899999865   3221112212235688999996554444432   3677777654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=90.42  E-value=2.6  Score=36.85  Aligned_cols=115  Identities=10%  Similarity=0.033  Sum_probs=58.6

Q ss_pred             EEEEeecccccCCCCeEEEEEeCC---CeEEEEEecCCCceEE-eeeeeccccCcceeEEEeeecCcccCCCcEEEEecC
Q psy3599          89 CLSWRSWISREARDPTLLVNIAAN---AVCILKVLDKEGAVQL-KRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE  164 (223)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~~~~~---~~~~v~i~d~~~~~~~-~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~  164 (223)
                      .+.|+       +|++.|+....+   ....+..+++.++... ...+.......  .+...|+|     ++.+|+..+.
T Consensus       225 ~~~Ws-------pDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~--~~~~~~Sp-----Dg~~l~~~~~  290 (751)
T 2xe4_A          225 EIVWG-------PDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLF--SAFMYKAA-----DTNTLCIGSQ  290 (751)
T ss_dssp             CCEEC-------SSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTC--EEEEEECT-----TSSEEEEEEE
T ss_pred             eEEEe-------cCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCce--EEEEEECC-----CCCEEEEEec
Confidence            57788       888766655432   1124556676654211 01111111122  14347999     7887765442


Q ss_pred             ---CCcEEEEEcccCccc--cc--ceeecccccCEEEEEEecCCCEEEEEeCC----CcEEEeeCCC
Q psy3599         165 ---DSCVYFLDIQSKEHK--NA--VNKLQGHACPVLGVSFNYDESLLATSDYQ----GLIILWSREK  220 (223)
Q Consensus       165 ---dg~v~iwd~~~~~~~--~~--~~~~~~h~~~v~~v~~~~~~~~l~s~s~d----~~i~iwd~~~  220 (223)
                         ...|+++|+.+   +  +.  .............+.|+..+.+++....+    ..|..+|+.+
T Consensus       291 ~~~~~~l~~~d~~~---~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          291 SPETAEVHLLDLRK---GNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             CSSCEEEEEEESSS---CTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CCCCceEEEEECCC---CCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence               33578888876   3  22  22223334455666665544444444443    2466666653

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=89.56  E-value=1.7  Score=32.19  Aligned_cols=108  Identities=13%  Similarity=0.037  Sum_probs=59.3

Q ss_pred             CCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceE-E----eeeeeccccCcceeEEEeeecCcccCCCcEE
Q psy3599          85 CPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQ-L----KRKFNVNHKSSKYQVRSTFCPIMSFREGACV  159 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~-~----~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l  159 (223)
                      ..+.+++|+       |++.+.+. ..+.  ++++ +..+... .    .+.  .+..+....-...|.|     ++.+.
T Consensus        41 ~~~~~laf~-------P~G~LYaV-~~G~--Ly~~-~~~t~~~~~W~~s~t~--IG~~Gw~~F~a~~fD~-----~G~LY  102 (236)
T 1tl2_A           41 SNFKFLFLS-------PGGELYGV-LNDK--IYKG-TPPTHDNDNWMGRAKK--IGNGGWNQFQFLFFDP-----NGYLY  102 (236)
T ss_dssp             TTCSEEEEC-------TTSCEEEE-ETTE--EEEE-SCCCSTTCCHHHHCEE--EECSCGGGCSEEEECT-----TSCEE
T ss_pred             ccceeEEEC-------CCccEEEE-eCCe--EEEE-CCCCCCcccccccccE--ecccccccceEEEECC-----CCCEE
Confidence            467799999       89998887 5555  4444 4332100 0    001  1221221112225777     68877


Q ss_pred             EEecCCCcEEEEEcccCccccccee---e-cccccCEEEEEEecCCCEEEEEeCCCcEE
Q psy3599         160 VTGSEDSCVYFLDIQSKEHKNAVNK---L-QGHACPVLGVSFNYDESLLATSDYQGLII  214 (223)
Q Consensus       160 ~sgs~dg~v~iwd~~~~~~~~~~~~---~-~~h~~~v~~v~~~~~~~~l~s~s~d~~i~  214 (223)
                      ++  .||.|+-++-.+..+..-+..   + ..-=..+..|.+.|+|.+.+..  |+.+.
T Consensus       103 av--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          103 AV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             EE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             Ee--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            77  569888777644111111111   1 1001357899999999988777  66643

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=89.54  E-value=5.7  Score=30.31  Aligned_cols=115  Identities=15%  Similarity=0.036  Sum_probs=61.7

Q ss_pred             CeeEEEEeecccccCC-CCeEEEEEeCCCeEEEEEecCCCceEEeeeee--ccccCcceeEEEeeecCcccCCCcEEEEe
Q psy3599          86 PITCLSWRSWISREAR-DPTLLVNIAANAVCILKVLDKEGAVQLKRKFN--VNHKSSKYQVRSTFCPIMSFREGACVVTG  162 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~--~~h~~~~~~i~~~~s~~~~~~~~~~l~sg  162 (223)
                      .+..+.+.       + ++.++++....+   +..+|..++. +.....  .+..... .-...+.+.    ++.++++-
T Consensus        81 ~p~gi~~~-------~~~g~l~v~d~~~~---i~~~d~~~g~-~~~~~~~~~~~~~~~-p~~i~~d~~----~G~l~v~d  144 (322)
T 2fp8_A           81 RTYDISYN-------LQNNQLYIVDCYYH---LSVVGSEGGH-ATQLATSVDGVPFKW-LYAVTVDQR----TGIVYFTD  144 (322)
T ss_dssp             CEEEEEEE-------TTTTEEEEEETTTE---EEEECTTCEE-CEEEESEETTEECSC-EEEEEECTT----TCCEEEEE
T ss_pred             CCceEEEc-------CCCCcEEEEECCCC---EEEEeCCCCE-EEEecccCCCCcccc-cceEEEecC----CCEEEEEC
Confidence            46789998       6 677766655544   4556766553 211110  0111010 022245551    25655553


Q ss_pred             cC-----------------CCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEE-eCCCcEEEeeCCC
Q psy3599         163 SE-----------------DSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATS-DYQGLIILWSREK  220 (223)
Q Consensus       163 s~-----------------dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-s~d~~i~iwd~~~  220 (223)
                      ..                 ++.|+.+|..+   ++...... .-.....++++|++..|..+ +..+.|..|++..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~---~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          145 VSTLYDDRGVQQIMDTSDKTGRLIKYDPST---KETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             SCSSCCTTCHHHHHHHTCCCEEEEEEETTT---TEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             CcccccccccceehcccCCCceEEEEeCCC---CEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            22                 36688888765   43222111 11234678999999855444 5568899998764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=89.47  E-value=1.2  Score=37.75  Aligned_cols=75  Identities=17%  Similarity=0.175  Sum_probs=46.7

Q ss_pred             EEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCE-EE
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPV-LG  194 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v-~~  194 (223)
                      .+..||+.+++.+..... +  ...  .......     .+.+++.|+.||.++.||.++   ++.+..++...... .-
T Consensus       467 ~l~A~D~~tG~~~W~~~~-~--~~~--~~g~~~t-----agglvf~g~~dg~l~A~D~~t---G~~lW~~~~~~g~~a~P  533 (582)
T 1flg_A          467 SLRAMDPVSGKVVWEHKE-H--LPL--WAGVLAT-----AGNLVFTGTGDGYFKAFDAKS---GKELWKFQTGSGIVSPP  533 (582)
T ss_dssp             EEEEECTTTCCEEEEEEE-S--SCC--CSCCEEE-----TTTEEEEECTTSEEEEEETTT---CCEEEEEECSSCCCSCC
T ss_pred             eEEEEECCCCCEEEEecC-C--CCC--cccceEe-----CCCEEEEECCCCcEEEEECCC---CCEEEEecCCCCcccCc
Confidence            577788888876654311 1  111  1011222     467888899999999999999   89888776533311 22


Q ss_pred             EEEecCCCE
Q psy3599         195 VSFNYDESL  203 (223)
Q Consensus       195 v~~~~~~~~  203 (223)
                      +.|..+|..
T Consensus       534 ~~y~~~G~q  542 (582)
T 1flg_A          534 ITWEQDGEQ  542 (582)
T ss_dssp             EEEEETTEE
T ss_pred             eEEEECCEE
Confidence            556667763

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=89.19  E-value=2.2  Score=36.09  Aligned_cols=78  Identities=12%  Similarity=0.094  Sum_probs=46.2

Q ss_pred             EEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeeccccc-CEEE
Q psy3599         116 ILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHAC-PVLG  194 (223)
Q Consensus       116 ~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~-~v~~  194 (223)
                      .+..+|..+++.+...-   +....  .......     .+..++.++.||.++.+|.++   ++.+..++.... ...-
T Consensus       445 ~l~a~D~~tG~~~W~~~---~~~~~--~~~~~~t-----~gg~v~~g~~dg~l~a~D~~t---G~~lw~~~~~~~~~~~p  511 (571)
T 2ad6_A          445 QIRAFDLTTGKAKWTKW---EKFAA--WGGTLYT-----KGGLVWYATLDGYLKALDNKD---GKELWNFKMPSGGIGSP  511 (571)
T ss_dssp             EEEEECTTTCCEEEEEE---ESSCC--CSBCEEE-----TTTEEEEECTTSEEEEEETTT---CCEEEEEECSSCCCSCC
T ss_pred             eEEEEECCCCCEEEEec---CCCCc--cceeEEE-----CCCEEEEEcCCCeEEEEECCC---CCEEEEEeCCCCcEeee
Confidence            56777888887665421   11111  1111222     366777799999999999999   888877764322 1122


Q ss_pred             EEEecCCCEEEE
Q psy3599         195 VSFNYDESLLAT  206 (223)
Q Consensus       195 v~~~~~~~~l~s  206 (223)
                      +.+..++..++.
T Consensus       512 ~~~~~~G~~yv~  523 (571)
T 2ad6_A          512 MTYSFKGKQYIG  523 (571)
T ss_dssp             EEEEETTEEEEE
T ss_pred             EEEEECCEEEEE
Confidence            345567665443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=88.48  E-value=6.7  Score=29.75  Aligned_cols=113  Identities=19%  Similarity=0.157  Sum_probs=62.9

Q ss_pred             CCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEecC
Q psy3599          85 CPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSE  164 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs~  164 (223)
                      .....++|+       +++.++++...++  .+..+|..+.. .. .+..+  ..+  ...++.+     +++++++...
T Consensus        32 ~~pegia~~-------~~g~lyv~d~~~~--~I~~~d~~g~~-~~-~~~~~--~~p--~gia~~~-----dG~l~vad~~   91 (306)
T 2p4o_A           32 TFLENLASA-------PDGTIFVTNHEVG--EIVSITPDGNQ-QI-HATVE--GKV--SGLAFTS-----NGDLVATGWN   91 (306)
T ss_dssp             CCEEEEEEC-------TTSCEEEEETTTT--EEEEECTTCCE-EE-EEECS--SEE--EEEEECT-----TSCEEEEEEC
T ss_pred             CCcceEEEC-------CCCCEEEEeCCCC--eEEEECCCCce-EE-EEeCC--CCc--eeEEEcC-----CCcEEEEecc
Confidence            456789998       8888777766666  67777876542 22 22111  221  2336788     6777666543


Q ss_pred             CC--cEEEEEcccCcccccceeec-ccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         165 DS--CVYFLDIQSKEHKNAVNKLQ-GHACPVLGVSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       165 dg--~v~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      ..  .|..+|..+   ++...... ........++..+++..+++-..++.|..+|...
T Consensus        92 ~~~~~v~~~d~~~---g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~  147 (306)
T 2p4o_A           92 ADSIPVVSLVKSD---GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ  147 (306)
T ss_dssp             TTSCEEEEEECTT---SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred             CCcceEEEEcCCC---CeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCC
Confidence            22  466667666   44322111 1122234444444444455544578888888653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=88.01  E-value=13  Score=32.50  Aligned_cols=116  Identities=8%  Similarity=-0.006  Sum_probs=65.6

Q ss_pred             CCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeec---cccCcceeEEE-eeecCcccCCCcEEE
Q psy3599          85 CPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNV---NHKSSKYQVRS-TFCPIMSFREGACVV  160 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~---~h~~~~~~i~~-~~s~~~~~~~~~~l~  160 (223)
                      ..|.++...       ++|.+-+....++   +..++..++....-....   +-....  +.+ ...+     ++. |-
T Consensus       310 ~~i~~i~~D-------~~g~lWigt~~~G---l~~~~~~~~~~~~~~~~~~~~~l~~~~--V~~i~~d~-----~g~-lW  371 (795)
T 4a2l_A          310 RSVRSIFMD-------SQGGMWLGTYFGG---LNYYHPIRNRFKNIRNIPYKNSLSDNV--VSCIVEDK-----DKN-LW  371 (795)
T ss_dssp             SCEEEEEEC-------TTSCEEEEESSSC---EEEECGGGGSSEEECCCTTSSSCSCSS--EEEEEECT-----TSC-EE
T ss_pred             CcEEEEEEe-------CCcCEEEEECCCC---eEEeCCCcccceEEcCCCCCCCCCCCe--eEEEEECC-----CCC-EE
Confidence            467788877       7777666555566   445565544221100000   101111  555 3343     444 44


Q ss_pred             EecCCCcEEEEEcccCcccccceeec--------ccccCEEEEEEecCCCEEEEEeCCCcEEEeeCCCC
Q psy3599         161 TGSEDSCVYFLDIQSKEHKNAVNKLQ--------GHACPVLGVSFNYDESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       161 sgs~dg~v~iwd~~~~~~~~~~~~~~--------~h~~~v~~v~~~~~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      .|+.++-+..||..+   +.......        .....|.++...+++..|-.|+.++-+..||.+++
T Consensus       372 iGt~~~Gl~~~~~~~---~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~  437 (795)
T 4a2l_A          372 IGTNDGGLNLYNPIT---QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG  437 (795)
T ss_dssp             EEESSSCEEEECTTT---CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred             EEECCCCeEEEcCCC---CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence            577776688899876   43222111        12356899988888884555666667888887764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=87.71  E-value=7.7  Score=29.55  Aligned_cols=117  Identities=5%  Similarity=0.011  Sum_probs=63.6

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeecc-----------------ccCcceeEEEeee
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVN-----------------HKSSKYQVRSTFC  148 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~-----------------h~~~~~~i~~~~s  148 (223)
                      ...+++|.       +++.++.++..++  .+..|+..++..........                 ....+  ...++.
T Consensus        20 ~p~~i~~d-------~~g~~l~v~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p--~gi~~~   88 (322)
T 2fp8_A           20 APNSFTFD-------STNKGFYTSVQDG--RVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRT--YDISYN   88 (322)
T ss_dssp             CCCCEECC-------TTCSSEEEECTTS--EEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCE--EEEEEE
T ss_pred             CceEEEEc-------CCCCEEEEEcCCC--eEEEECCCCCceEEEecccccccccccccccchhccccCCCC--ceEEEc
Confidence            45678888       8888666666666  56677877653221110000                 00111  233566


Q ss_pred             cCcccCCCcEEEEecCCCcEEEEEcccCccccc--cee-ecc-cccCEEEEEEec-CCCEEEEEeC--------------
Q psy3599         149 PIMSFREGACVVTGSEDSCVYFLDIQSKEHKNA--VNK-LQG-HACPVLGVSFNY-DESLLATSDY--------------  209 (223)
Q Consensus       149 ~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~--~~~-~~~-h~~~v~~v~~~~-~~~~l~s~s~--------------  209 (223)
                      +.    ++.++++ ...+.+..+|..+   ++.  +.. ..+ .......+++.+ +|++.++-..              
T Consensus        89 ~~----~g~l~v~-d~~~~i~~~d~~~---g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~  160 (322)
T 2fp8_A           89 LQ----NNQLYIV-DCYYHLSVVGSEG---GHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDT  160 (322)
T ss_dssp             TT----TTEEEEE-ETTTEEEEECTTC---EECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHH
T ss_pred             CC----CCcEEEE-ECCCCEEEEeCCC---CEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcc
Confidence            52    3555554 3344478888765   432  111 111 113468899999 8987776532              


Q ss_pred             ---CCcEEEeeCCCC
Q psy3599         210 ---QGLIILWSREKH  221 (223)
Q Consensus       210 ---d~~i~iwd~~~~  221 (223)
                         ++.|..||..++
T Consensus       161 ~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A          161 SDKTGRLIKYDPSTK  175 (322)
T ss_dssp             TCCCEEEEEEETTTT
T ss_pred             cCCCceEEEEeCCCC
Confidence               366888886543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=87.06  E-value=11  Score=30.51  Aligned_cols=112  Identities=13%  Similarity=0.138  Sum_probs=61.3

Q ss_pred             CeeEEEEeecccccCC-CCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCc-EEEEec
Q psy3599          86 PITCLSWRSWISREAR-DPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGA-CVVTGS  163 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~-~l~sgs  163 (223)
                      ....++++       | +...|..+....  .+..+|+.++. +....  .....+  ...++++     +++ ++++..
T Consensus       138 ~P~~lavd-------p~~~g~Lyv~d~~~--~I~~id~~~~~-v~~~~--~~~~~P--~~ia~d~-----~G~~lyvad~  198 (430)
T 3tc9_A          138 GAVWLSFD-------PKNHNHLYLVGEQH--PTRLIDFEKEY-VSTVY--SGLSKV--RTICWTH-----EADSMIITND  198 (430)
T ss_dssp             CCCEEEEE-------TTEEEEEEEEEBTE--EEEEEETTTTE-EEEEE--CCCSCE--EEEEECT-----TSSEEEEEEC
T ss_pred             CCCEEEEC-------CCCCCeEEEEeCCC--cEEEEECCCCE-EEEEe--cCCCCc--ceEEEeC-----CCCEEEEEeC
Confidence            45678888       6 344454444433  67778887764 32221  222222  4447888     677 455544


Q ss_pred             CCC----cEEEEEcccCcccccc--eeecccccCEEEEEEec-CCCEEEEEeCCCcEEEeeCCCC
Q psy3599         164 EDS----CVYFLDIQSKEHKNAV--NKLQGHACPVLGVSFNY-DESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       164 ~dg----~v~iwd~~~~~~~~~~--~~~~~h~~~v~~v~~~~-~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      .++    .+...+. .   +...  ..+.. -.....++++| ++.++++-..++.|..++...+
T Consensus       199 ~~~~~~~~v~~~~~-~---g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~  258 (430)
T 3tc9_A          199 QNNNDRPNNYILTR-E---SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ  258 (430)
T ss_dssp             CSCTTSEEEEEEEG-G---GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT
T ss_pred             CCCcccceEEEEeC-C---Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC
Confidence            322    2333333 3   2222  22221 22346678899 6777777667788988887643

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=86.32  E-value=8.2  Score=28.43  Aligned_cols=115  Identities=12%  Similarity=0.025  Sum_probs=64.2

Q ss_pred             CCeeEEEEeecccccCCC-CeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec
Q psy3599          85 CPITCLSWRSWISREARD-PTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS  163 (223)
Q Consensus        85 ~~i~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs  163 (223)
                      .....++++       ++ +.++++...+.  .+.+++.+... .......+ ...+  ...+++|.    ++.++++..
T Consensus        79 ~~p~~ia~d-------~~~~~lyv~d~~~~--~I~~~~~~g~~-~~~~~~~~-~~~P--~~i~vd~~----~g~lyv~~~  141 (267)
T 1npe_A           79 GSPEGIALD-------HLGRTIFWTDSQLD--RIEVAKMDGTQ-RRVLFDTG-LVNP--RGIVTDPV----RGNLYWTDW  141 (267)
T ss_dssp             CCEEEEEEE-------TTTTEEEEEETTTT--EEEEEETTSCS-CEEEECSS-CSSE--EEEEEETT----TTEEEEEEC
T ss_pred             CCccEEEEE-------ecCCeEEEEECCCC--EEEEEEcCCCC-EEEEEECC-CCCc--cEEEEeeC----CCEEEEEEC
Confidence            467889998       65 45555555555  56677766432 11111111 1222  33468873    244444443


Q ss_pred             C--CCcEEEEEcccCcccccceee-cccccCEEEEEEecCCCEE-EEEeCCCcEEEeeCCC
Q psy3599         164 E--DSCVYFLDIQSKEHKNAVNKL-QGHACPVLGVSFNYDESLL-ATSDYQGLIILWSREK  220 (223)
Q Consensus       164 ~--dg~v~iwd~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l-~s~s~d~~i~iwd~~~  220 (223)
                      .  .+.|..++...   .. ...+ ...-.....+++++++..| ++-...+.|..+|+..
T Consensus       142 ~~~~~~I~~~~~dg---~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g  198 (267)
T 1npe_A          142 NRDNPKIETSHMDG---TN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ  198 (267)
T ss_dssp             CSSSCEEEEEETTS---CC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred             CCCCcEEEEEecCC---CC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC
Confidence            3  36788888764   22 2222 1222356889999986655 4555567899888753

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=86.06  E-value=5.2  Score=30.40  Aligned_cols=66  Identities=17%  Similarity=0.186  Sum_probs=43.3

Q ss_pred             eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeecccccCEEEEEEecCCCEEEEEeCCC--cEEEeeCCCC
Q psy3599         146 TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSREKH  221 (223)
Q Consensus       146 ~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~d~--~i~iwd~~~~  221 (223)
                      +|++     ++.++++-..++.|..||...   .. ...+. -......+++.++++++++.....  .|..+|..++
T Consensus        38 a~~~-----~g~lyv~d~~~~~I~~~d~~g---~~-~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g  105 (306)
T 2p4o_A           38 ASAP-----DGTIFVTNHEVGEIVSITPDG---NQ-QIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG  105 (306)
T ss_dssp             EECT-----TSCEEEEETTTTEEEEECTTC---CE-EEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred             EECC-----CCCEEEEeCCCCeEEEECCCC---ce-EEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC
Confidence            6777     688888877888999998765   32 22222 124578899999998766654332  3656665554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=85.56  E-value=13  Score=30.07  Aligned_cols=114  Identities=10%  Similarity=0.122  Sum_probs=65.1

Q ss_pred             eEEEEeecccccCC-CCeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCc-EEEEecCC
Q psy3599          88 TCLSWRSWISREAR-DPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGA-CVVTGSED  165 (223)
Q Consensus        88 ~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~-~l~sgs~d  165 (223)
                      ..++++       + ++.++++-..++  .+..++..++......+..+.....  ...+++|     +++ ++++-...
T Consensus       231 ~giavd-------~~~G~lyv~d~~~~--~V~~~d~~~g~~~~~~~~~~~~~~~--~~ia~dp-----dG~~LYvad~~~  294 (433)
T 4hw6_A          231 KTCAVH-------PQNGKIYYTRYHHA--MISSYDPATGTLTEEEVMMDTKGSN--FHIVWHP-----TGDWAYIIYNGK  294 (433)
T ss_dssp             CCCEEC-------TTTCCEEECBTTCS--EEEEECTTTCCEEEEEEECSCCSSC--EEEEECT-----TSSEEEEEETTT
T ss_pred             CEEEEe-------CCCCeEEEEECCCC--EEEEEECCCCeEEEEEeccCCCCCc--ccEEEeC-----CCCEEEEEeCCC
Confidence            446666       5 677766665666  6777788766442322222222222  3347888     677 66666667


Q ss_pred             CcEEEEEcccCccccc--ceeeccc---------------ccCEEEEEE---------ecCCCEEEEEeCCCcEEEeeC
Q psy3599         166 SCVYFLDIQSKEHKNA--VNKLQGH---------------ACPVLGVSF---------NYDESLLATSDYQGLIILWSR  218 (223)
Q Consensus       166 g~v~iwd~~~~~~~~~--~~~~~~h---------------~~~v~~v~~---------~~~~~~l~s~s~d~~i~iwd~  218 (223)
                      +.|+.++..... +..  ...+.+.               -.....+++         .+++.+.++-...+.|+.++.
T Consensus       295 ~~I~~~~~d~~~-~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          295 HCIYRVDYNRET-GKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             TEEEEEEBCTTT-CCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             CEEEEEeCCCCC-cccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence            889998865200 211  1111110               113566888         666777777666778888874

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=83.89  E-value=14  Score=28.97  Aligned_cols=115  Identities=7%  Similarity=-0.004  Sum_probs=66.8

Q ss_pred             CeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEecCCCceEEeeeeecccc--Cc-ceeEEE-ee---ecCcccCCCcE
Q psy3599          86 PITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHK--SS-KYQVRS-TF---CPIMSFREGAC  158 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~--~~-~~~i~~-~~---s~~~~~~~~~~  158 (223)
                      -..++.|.      +.++.++++.-.++  .|..|+...+......+. +-.  .. ...... .+   .|     ++.+
T Consensus        14 yPE~~~wd------~~~g~~~vs~l~~g--~V~~~~~~~~~~~~~~~~-~~s~~g~~~~~~sGl~~~~~D~-----~grL   79 (334)
T 2p9w_A           14 TPEDTIYD------RTRQVFYQSNLYKG--RIEVYNPKTQSHFNVVID-GASSNGDGEQQMSGLSLLTHDN-----SKRL   79 (334)
T ss_dssp             CCSCEEEE------TTTTEEEEEETTTT--EEEEECTTTCCEEEECCT-TTCCSSCCSEEEEEEEESSSSS-----CCEE
T ss_pred             CCcCccCc------CCCCEEEEEeccCC--EEEEEcCCCCeEEEEecC-CccccCCCcceeeEEEEeccCC-----CCcE
Confidence            34578887      23555555555677  788889875543332322 211  11 111222 56   46     5666


Q ss_pred             EEEec-------------CCCcEEEEEcc---cCcccccceeec--cc----------c-cCEEEEEEecCCCEEEEEeC
Q psy3599         159 VVTGS-------------EDSCVYFLDIQ---SKEHKNAVNKLQ--GH----------A-CPVLGVSFNYDESLLATSDY  209 (223)
Q Consensus       159 l~sgs-------------~dg~v~iwd~~---~~~~~~~~~~~~--~h----------~-~~v~~v~~~~~~~~l~s~s~  209 (223)
                      +++..             .+..|..+|+.   +   ++.+....  +.          . .....++..++|+..++++.
T Consensus        80 ~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~t---g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~  156 (334)
T 2p9w_A           80 FAVMKNAKSFNFADQSSHGASSFHSFNLPLSEN---SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL  156 (334)
T ss_dssp             EEEEEETTTTCTTSCCSSSCCEEEEEESSCCTT---CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE
T ss_pred             EEEEcccccccccccccCCCCEEEEEcCCcCCC---CCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC
Confidence            66533             15779999998   6   55443332  11          1 24789999999999988876


Q ss_pred             C-CcEEEee
Q psy3599         210 Q-GLIILWS  217 (223)
Q Consensus       210 d-~~i~iwd  217 (223)
                      . +.|...+
T Consensus       157 ~~~~I~rV~  165 (334)
T 2p9w_A          157 GMPAIARVS  165 (334)
T ss_dssp             SSCEEEEEC
T ss_pred             CCCeEEEEe
Confidence            6 5544433

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=83.57  E-value=5.2  Score=34.09  Aligned_cols=69  Identities=14%  Similarity=0.177  Sum_probs=37.1

Q ss_pred             EEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEec------CCCcEEEEEcccCccc
Q psy3599         106 LVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGS------EDSCVYFLDIQSKEHK  179 (223)
Q Consensus       106 l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sgs------~dg~v~iwd~~~~~~~  179 (223)
                      |+.++.++  .+..+|..+|+.+...-...+.. .+.+.  -+|..   .+..++.++      .+|.|+.+|..+   +
T Consensus       124 V~v~t~dg--~l~AlDa~TG~~~W~~~~~~~~~-~~~~~--ssP~v---~~g~V~vg~~g~e~g~~g~v~A~D~~T---G  192 (599)
T 1w6s_A          124 ILKTQLDG--NVAALNAETGETVWKVENSDIKV-GSTLT--IAPYV---VKDKVIIGSSGAELGVRGYLTAYDVKT---G  192 (599)
T ss_dssp             EEEECTTS--EEEEEETTTCCEEEEEECCCGGG-TCBCC--SCCEE---ETTEEEECCBCGGGTCCCEEEEEETTT---C
T ss_pred             EEEEcCCC--EEEEEECCCCCEEEeecCCCCCc-cceee--cCCEE---ECCEEEEEecccccCCCCeEEEEECCC---C
Confidence            55566566  56667888887776432111110 00011  11211   133455554      378999999998   7


Q ss_pred             ccceee
Q psy3599         180 NAVNKL  185 (223)
Q Consensus       180 ~~~~~~  185 (223)
                      +.+-.+
T Consensus       193 ~~~W~~  198 (599)
T 1w6s_A          193 EQVWRA  198 (599)
T ss_dssp             CEEEEE
T ss_pred             cEEEEE
Confidence            765544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=82.84  E-value=23  Score=30.81  Aligned_cols=137  Identities=12%  Similarity=0.104  Sum_probs=72.9

Q ss_pred             CcEEEEEECCCCceeeee-------------eeee------cCCCCeeEEEEeecccccCCCCeEEEEEeCCCeEEEEEe
Q psy3599          60 GVIVSILCDDLGRLSKGK-------------RLVL------SQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVL  120 (223)
Q Consensus        60 ~~i~~~~~~~~~~~~~~~-------------~~~~------~~~~~i~~l~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~  120 (223)
                      +.|.++..+++|.++...             .+..      -....|.++...       .++.+.+....++   +..+
T Consensus       363 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d-------~~g~lWigt~~~G---l~~~  432 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKD-------SEGNLWFGTYLGN---ISYY  432 (781)
T ss_dssp             SCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEEC-------TTSCEEEEETTEE---EEEE
T ss_pred             cceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEEC-------CCCCEEEEeccCC---EEEE
Confidence            457777777777776432             0100      002457777766       6777666443345   4566


Q ss_pred             cCCCceEEeeeeeccccCcceeEEE-eeecCcccCCCcEEEEecCCCcEEEEEcccCcccccceeeccc-----ccCEEE
Q psy3599         121 DKEGAVQLKRKFNVNHKSSKYQVRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGH-----ACPVLG  194 (223)
Q Consensus       121 d~~~~~~~~~~~~~~h~~~~~~i~~-~~s~~~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~h-----~~~v~~  194 (223)
                      +..++.... ....+.....  +.+ ...+     ++.+.+ |+.. -+..+|..+   ++........     ...|.+
T Consensus       433 ~~~~~~~~~-~~~~~~~~~~--v~~i~~d~-----~g~lwi-gt~~-Gl~~~~~~~---~~~~~~~~~~~~~~~~~~i~~  499 (781)
T 3v9f_A          433 NTRLKKFQI-IELEKNELLD--VRVFYEDK-----NKKIWI-GTHA-GVFVIDLAS---KKVIHHYDTSNSQLLENFVRS  499 (781)
T ss_dssp             CSSSCEEEE-CCSTTTCCCC--EEEEEECT-----TSEEEE-EETT-EEEEEESSS---SSCCEEECTTTSSCSCSCEEE
T ss_pred             cCCCCcEEE-eccCCCCCCe--EEEEEECC-----CCCEEE-EECC-ceEEEeCCC---CeEEecccCcccccccceeEE
Confidence            776664322 1100111111  444 3343     355444 4554 488888876   4432222111     357899


Q ss_pred             EEEecCCCEEEEEeCCCcEEEeeCCC
Q psy3599         195 VSFNYDESLLATSDYQGLIILWSREK  220 (223)
Q Consensus       195 v~~~~~~~~l~s~s~d~~i~iwd~~~  220 (223)
                      +...++|.+.+....+| +..||..+
T Consensus       500 i~~d~~g~lWigt~~~G-l~~~~~~~  524 (781)
T 3v9f_A          500 IAQDSEGRFWIGTFGGG-VGIYTPDM  524 (781)
T ss_dssp             EEECTTCCEEEEESSSC-EEEECTTC
T ss_pred             EEEcCCCCEEEEEcCCC-EEEEeCCC
Confidence            98888888665543344 66677654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=82.65  E-value=2.3  Score=36.42  Aligned_cols=64  Identities=13%  Similarity=0.076  Sum_probs=42.9

Q ss_pred             CCcEEEEecCCC-----------cEEEEEcccCccccc--ceeecc-cccCEEEEEEecCCCEEEEEeC-CCcEEEeeCC
Q psy3599         155 EGACVVTGSEDS-----------CVYFLDIQSKEHKNA--VNKLQG-HACPVLGVSFNYDESLLATSDY-QGLIILWSRE  219 (223)
Q Consensus       155 ~~~~l~sgs~dg-----------~v~iwd~~~~~~~~~--~~~~~~-h~~~v~~v~~~~~~~~l~s~s~-d~~i~iwd~~  219 (223)
                      ++.+++.|+.+.           .+.+||..+   .+.  +..+.. +.....++++..++.+++.|+. +..+.+||..
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t---~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~  273 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPST---GIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS  273 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTT---CCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGG
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCC---CcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCc
Confidence            577888877543           578899887   432  222321 3333445677889999999984 5679999986


Q ss_pred             CC
Q psy3599         220 KH  221 (223)
Q Consensus       220 ~~  221 (223)
                      +.
T Consensus       274 t~  275 (656)
T 1k3i_A          274 SD  275 (656)
T ss_dssp             GT
T ss_pred             CC
Confidence            53

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=82.22  E-value=18  Score=29.18  Aligned_cols=112  Identities=13%  Similarity=0.065  Sum_probs=59.2

Q ss_pred             CeeEEEEeecccccCCC---CeEEEEEeCCCeEEEEEecCCCceEEeeeeeccccCcceeEEEeeecCcccCCCcEEEEe
Q psy3599          86 PITCLSWRSWISREARD---PTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTG  162 (223)
Q Consensus        86 ~i~~l~~~~~~~~~~~~---~~~l~~~~~~~~~~v~i~d~~~~~~~~~~~~~~h~~~~~~i~~~~s~~~~~~~~~~l~sg  162 (223)
                      ....++|+       ++   +.++++-.. .  .++.+|+.++... ..  ......+  ...++++     ++.++++-
T Consensus       140 ~P~gvavd-------~~s~~g~Lyv~D~~-~--~I~~id~~~g~v~-~~--~~~~~~P--~giavd~-----dG~lyVad  199 (433)
T 4hw6_A          140 NIWRMMFD-------PNSNYDDLYWVGQR-D--AFRHVDFVNQYVD-IK--TTNIGQC--ADVNFTL-----NGDMVVVD  199 (433)
T ss_dssp             CCCEEEEC-------TTTTTCEEEEECBT-S--CEEEEETTTTEEE-EE--CCCCSCE--EEEEECT-----TCCEEEEE
T ss_pred             CCceEEEc-------cccCCCEEEEEeCC-C--CEEEEECCCCEEE-Ee--ecCCCCc--cEEEECC-----CCCEEEEc
Confidence            45688898       63   565555433 4  5677788766433 22  1222222  3337888     67766654


Q ss_pred             cCC---Cc-EEEEEcccCcccccc-eeecccccCEEEEEEec-CCCEEEEEeCCCcEEEeeCCCC
Q psy3599         163 SED---SC-VYFLDIQSKEHKNAV-NKLQGHACPVLGVSFNY-DESLLATSDYQGLIILWSREKH  221 (223)
Q Consensus       163 s~d---g~-v~iwd~~~~~~~~~~-~~~~~h~~~v~~v~~~~-~~~~l~s~s~d~~i~iwd~~~~  221 (223)
                      ...   .. +...+...   .... ..+. .-.....++++| ++.+.++-..++.|+.+|..++
T Consensus       200 ~~~~~~~~gv~~~~~~~---~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g  260 (433)
T 4hw6_A          200 DQSSDTNTGIYLFTRAS---GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG  260 (433)
T ss_dssp             CCSCTTSEEEEEECGGG---TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred             CCCCcccceEEEEECCC---Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence            321   11 22233222   1110 1111 122345678888 6776666666778888887644

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=81.56  E-value=22  Score=29.55  Aligned_cols=66  Identities=14%  Similarity=0.120  Sum_probs=42.5

Q ss_pred             eeecCcccCCCcEEEEecCCCcEEEEEcc-------cCccccc-----------ceee-c-ccccCEEEEEEecCCCE-E
Q psy3599         146 TFCPIMSFREGACVVTGSEDSCVYFLDIQ-------SKEHKNA-----------VNKL-Q-GHACPVLGVSFNYDESL-L  204 (223)
Q Consensus       146 ~~s~~~~~~~~~~l~sgs~dg~v~iwd~~-------~~~~~~~-----------~~~~-~-~h~~~v~~v~~~~~~~~-l  204 (223)
                      +.+|.    ++.++++-..++.|+.+|+.       +   +..           +..+ . +.......++|+|+++. .
T Consensus       253 avdp~----~g~LYvtd~~~g~V~r~d~~~~~~~~~t---g~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lY  325 (496)
T 3kya_A          253 TIHPI----NGELYFNSYEKGQVFRLDLVDYFKTIKN---GGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAY  325 (496)
T ss_dssp             EECTT----TCCEEEEETTTTEEEEECHHHHHHHHHT---TCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEE
T ss_pred             EEcCC----CCeEEEEECCCCEEEEEecccccccccC---ceeecccccccccccceeEecCCCCCceEEEEcCCCCEEE
Confidence            45664    56777788888899999987       4   332           1111 1 12234578999999995 4


Q ss_pred             EEEeCCCcEEEeeC
Q psy3599         205 ATSDYQGLIILWSR  218 (223)
Q Consensus       205 ~s~s~d~~i~iwd~  218 (223)
                      ++-+....|+.++.
T Consensus       326 vaD~~~h~I~kid~  339 (496)
T 3kya_A          326 FGVINNHYFMRSDY  339 (496)
T ss_dssp             EEETTTTEEEEEEE
T ss_pred             EEeCCCCEEEEEec
Confidence            44455677887553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	223
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.004
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.004
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.003
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.002

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.9 bits (120), Expect = 3e-08
 Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 3/97 (3%)

Query: 121 DKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKN 180
           D    +   R        S   +      +   + G  ++ G +D      D    +   
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR-- 304

Query: 181 AVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWS 217
               L GH   V  +    D   +AT  +   + +W+
Sbjct: 305 -AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 3/74 (4%)

Query: 148 CPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATS 207
             +    +    V+G+ D+     D++            GH   +  + F  + +  AT 
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMC---RQTFTGHESDINAICFFPNGNAFATG 244

Query: 208 DYQGLIILWSREKH 221
                  L+     
Sbjct: 245 SDDATCRLFDLRAD 258

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.6 bits (114), Expect = 1e-07
 Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 150 IMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDY 209
           ++    G  +++ ++D  +   D ++K     +  L  H   V  + F+     + T   
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKRC---MKTLNAHEHFVTSLDFHKTAPYVVTGSV 309

Query: 210 QGLIILW 216
              + +W
Sbjct: 310 DQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.0 bits (102), Expect = 5e-06
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 3/93 (3%)

Query: 131 KFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHAC 190
            +      S     +      S + G  +++GS D  +   D+ +      +  L GH  
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC---LMTLVGHDN 248

Query: 191 PVLGVSFNYDESLLATSDYQGLIILWSREKHEP 223
            V GV F+     + +      + +W  +    
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 281

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.6 bits (88), Expect = 3e-04
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 184 KLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHEP 223
            L GH  PV  V F+   S++ ++     I +W  E  + 
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF 51

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 2e-07
 Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 17/142 (11%)

Query: 86  PITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS 145
            +  + +        RD   +V+ + +    L  L         +  N       Y    
Sbjct: 256 SVYSVVF-------TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 308

Query: 146 TFCPIMSF-REGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGV------SFN 198
            F   ++  +    +++GS+D  V F D +S      +  LQGH   V+ V      S  
Sbjct: 309 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP---LLMLQGHRNSVISVAVANGSSLG 365

Query: 199 YDESLLATSDYQGLIILWSREK 220
            + ++ AT        +W  +K
Sbjct: 366 PEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 4e-04
 Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 4/81 (4%)

Query: 147 FCPIMSFREGACVVTGSEDSCVYFLDIQSKEH----KNAVNKLQGHACPVLGVSFNYDES 202
               +S  +G  +  GS D  V   D ++        +      GH   V  V F  D  
Sbjct: 208 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ 267

Query: 203 LLATSDYQGLIILWSREKHEP 223
            + +      + LW+ +    
Sbjct: 268 SVVSGSLDRSVKLWNLQNANN 288

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 9/79 (11%)

Query: 154 REGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHAC---------PVLGVSFNYDESLL 204
           R+G  VV+GS D  V   ++Q+  +K+         C          VL V+   ++  +
Sbjct: 264 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI 323

Query: 205 ATSDYQGLIILWSREKHEP 223
            +      ++ W ++   P
Sbjct: 324 LSGSKDRGVLFWDKKSGNP 342

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.2 bits (110), Expect = 5e-07
 Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 4/76 (5%)

Query: 149 PIMSF---REGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLA 205
           PI      ++   +     +  V+  +    +    V++L+ H   V GV +  D + + 
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ-VHELKEHNGQVTGVDWAPDSNRIV 67

Query: 206 TSDYQGLIILWSREKH 221
           T        +W+ +  
Sbjct: 68  TCGTDRNAYVWTLKGR 83

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 8e-06
 Identities = 7/62 (11%), Positives = 17/62 (27%), Gaps = 4/62 (6%)

Query: 156 GACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIIL 215
           G   V+  +D+ +                    +  VL    + D+  + T        +
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGASI----FQSKESSSVLSCDISVDDKYIVTGSGDKKATV 332

Query: 216 WS 217
           + 
Sbjct: 333 YE 334

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (97), Expect = 2e-05
 Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 132 FNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACP 191
           F  +  ++     +         E   V TGS D+ ++   ++       +  L  H   
Sbjct: 203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI--IKALNAHKDG 260

Query: 192 VLGVSFNYDESLLATSDYQGLIILWS 217
           V  + +    +L+++      I  W+
Sbjct: 261 VNNLLWETPSTLVSSGA-DACIKRWN 285

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 9/79 (11%), Positives = 26/79 (32%), Gaps = 2/79 (2%)

Query: 141 YQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD 200
                +   +    +G  + + S D  +   ++ + + +  +          LG+ +   
Sbjct: 235 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--T 292

Query: 201 ESLLATSDYQGLIILWSRE 219
           +  L +    G I   + E
Sbjct: 293 KQALVSISANGFINFVNPE 311

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 4e-04
 Identities = 9/39 (23%), Positives = 15/39 (38%)

Query: 185 LQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHEP 223
             GH   +  +S + D   L ++D +G I  W       
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS 46

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.9 bits (83), Expect = 0.001
 Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 1/86 (1%)

Query: 132 FNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACP 191
           F + H +S     +    +    +   + TGS D+ V   ++        +     HA  
Sbjct: 212 FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH-PIIIKGAHAMS 270

Query: 192 VLGVSFNYDESLLATSDYQGLIILWS 217
            +      +E+ + ++     I  W+
Sbjct: 271 SVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 8/88 (9%)

Query: 135 NHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNA------VNKLQGH 188
                +              +   +V+G+ D  +   D+ +     A      +  L  H
Sbjct: 207 CGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH 266

Query: 189 ACPVLGVSFNYDESLLATSDYQGLIILW 216
           +  V  + F  DE  + +S +   I++W
Sbjct: 267 SGRVFRLQF--DEFQIVSSSHDDTILIW 292

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 150 IMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDY 209
           I +F     ++    ++     +++S +  +A   +   A  +  V+F    +L+A  + 
Sbjct: 287 ITTFYVSDNILVSGSENQFNIYNLRSGKLVHAN--ILKDADQIWSVNFKGK-TLVAAVEK 343

Query: 210 QGLIILW 216
            G   L 
Sbjct: 344 DGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 155 EGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLII 214
           E   V+TG++D  +   D  +K+    + +L GH   V  + + +   L++ S  + + +
Sbjct: 22  EDNYVITGADDKMIRVYDSINKKF---LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRV 78

Query: 215 LWSREKH 221
              ++  
Sbjct: 79  WDIKKGC 85

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 7/67 (10%)

Query: 154 REGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLI 213
              A      E   +   D++++       K+      +  +  + D   +      G I
Sbjct: 286 EFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNLTDLRLSADRKTVMVRKDDGKI 338

Query: 214 ILWSREK 220
             +  EK
Sbjct: 339 YTFPLEK 345

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 12/131 (9%)

Query: 83  QDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQ 142
            +C  T    +S  S       +LV  + NA   +K+ D +    L+     N   S   
Sbjct: 207 GNCIHTLTGHQSLTSGMELKDNILV--SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 264

Query: 143 VRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQ--GHACPVLGVSFNYD 200
                   +        +T S+D  V   D+++ E    +  L+  G    V  +  +  
Sbjct: 265 CLQFNKNFV--------ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 316

Query: 201 ESLLATSDYQG 211
           + + A     G
Sbjct: 317 KLVCAVGSRNG 327