Psyllid ID: psy3710
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 424 | 2.2.26 [Sep-21-2011] | |||||||
| Q5R7W0 | 344 | WD repeat domain phosphoi | yes | N/A | 0.613 | 0.755 | 0.670 | 1e-98 | |
| Q5ZL16 | 344 | WD repeat domain phosphoi | yes | N/A | 0.613 | 0.755 | 0.662 | 4e-98 | |
| Q9CR39 | 344 | WD repeat domain phosphoi | yes | N/A | 0.613 | 0.755 | 0.666 | 1e-97 | |
| Q5MNZ6 | 344 | WD repeat domain phosphoi | yes | N/A | 0.613 | 0.755 | 0.666 | 1e-97 | |
| Q640T2 | 344 | WD repeat domain phosphoi | yes | N/A | 0.613 | 0.755 | 0.662 | 1e-97 | |
| Q7ZUW6 | 344 | WD repeat domain phosphoi | yes | N/A | 0.613 | 0.755 | 0.655 | 8e-97 | |
| Q68F45 | 344 | WD repeat domain phosphoi | N/A | N/A | 0.613 | 0.755 | 0.655 | 1e-96 | |
| Q9Y484 | 360 | WD repeat domain phosphoi | no | N/A | 0.787 | 0.927 | 0.377 | 2e-71 | |
| Q91VM3 | 360 | WD repeat domain phosphoi | no | N/A | 0.787 | 0.927 | 0.377 | 3e-71 | |
| Q6DCV0 | 355 | WD repeat domain phosphoi | N/A | N/A | 0.766 | 0.915 | 0.381 | 9e-71 |
| >sp|Q5R7W0|WIPI3_PONAB WD repeat domain phosphoinositide-interacting protein 3 OS=Pongo abelii GN=WDR45B PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 360 bits (923), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 177/264 (67%), Positives = 205/264 (77%), Gaps = 4/264 (1%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL + + NGLLYAGFNQD GCFACGME+GFR+YN DPLKEKE+Q+F +GG+GHVEML
Sbjct: 1 MNLLPCNPHGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEML 60
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVGGG PKYP N+VMIWDDLKK+ VI +EF+ VK V+LRRD+IVVVL+ +I
Sbjct: 61 FRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMI 120
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KV+TF P QLHVFET NPKGLCVLCPNSNNSLLAFPG +GHV LVDLA E+PP+D
Sbjct: 121 KVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVD 180
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSN- 236
I AHE LSCIALN GTR+ATAS KGTLIR+FDT SG + ELRRG + C NSN
Sbjct: 181 IPAHEGVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINSNQ 240
Query: 237 NSLLAFPGRKSGHVHLVDLADPER 260
++ L G VH+ DP+R
Sbjct: 241 DASLICVSSDHGTVHIFAAEDPKR 264
|
Pongo abelii (taxid: 9601) |
| >sp|Q5ZL16|WIPI3_CHICK WD repeat domain phosphoinositide-interacting protein 3 OS=Gallus gallus GN=WDR45B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 358 bits (919), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 175/264 (66%), Positives = 206/264 (78%), Gaps = 4/264 (1%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL ++ + NGLLYAGFNQD GCFACGME+GFR+YN DPLKEKE+Q+F +GG+GHVEML
Sbjct: 1 MNLLPANPHGNGLLYAGFNQDHGCFACGMENGFRVYNADPLKEKEKQEFPEGGVGHVEML 60
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVGGG PKYP N+VMIWDDLKK+ VI +EF+ VK V+LRRD+IVVVL+ +I
Sbjct: 61 FRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMI 120
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KV+TF P QLHVFET NPKGLCVLCPNSNNSLLAFPG +GHV +VDLA+ E+PP+D
Sbjct: 121 KVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQIVDLANTEKPPVD 180
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSN- 236
I AHE LSCIALN GTR+ATAS KGTLIR+FDT SG + ELRRG + C N N
Sbjct: 181 IPAHEGILSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQ 240
Query: 237 NSLLAFPGRKSGHVHLVDLADPER 260
++ L G VH+ DP+R
Sbjct: 241 DASLICVSSDHGTVHIFAAEDPKR 264
|
Gallus gallus (taxid: 9031) |
| >sp|Q9CR39|WIPI3_MOUSE WD repeat domain phosphoinositide-interacting protein 3 OS=Mus musculus GN=Wdr45b PE=2 SV=2 | Back alignment and function description |
|---|
Score = 357 bits (916), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 176/264 (66%), Positives = 204/264 (77%), Gaps = 4/264 (1%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL + + NGLLYAGFNQD GCFACGME+GFR+YN DPLKEKE+Q+F +GG+GHVEML
Sbjct: 1 MNLLPCNPHGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEML 60
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVGGG PKYP N+VMIWDDLKK+ VI +EF+ VK V+LRRD+IVVVL+ +I
Sbjct: 61 FRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMI 120
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KV+TF P QLHVFET NPKGLCVLCPNSNNSLLAFPG +GHV LVDLA E+PP+D
Sbjct: 121 KVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVD 180
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSN- 236
I AHE LSCIALN GTR+ATAS KGTLIR+FDT SG + ELRRG + C N N
Sbjct: 181 IPAHEGVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQ 240
Query: 237 NSLLAFPGRKSGHVHLVDLADPER 260
++ L G VH+ DP+R
Sbjct: 241 DASLICVSSDHGTVHIFAAEDPKR 264
|
Mus musculus (taxid: 10090) |
| >sp|Q5MNZ6|WIPI3_HUMAN WD repeat domain phosphoinositide-interacting protein 3 OS=Homo sapiens GN=WDR45B PE=2 SV=2 | Back alignment and function description |
|---|
Score = 357 bits (916), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 176/264 (66%), Positives = 204/264 (77%), Gaps = 4/264 (1%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL + + NGLLYAGFNQD GCFACGME+GFR+YN DPLKEKE+Q+F +GG+GHVEML
Sbjct: 1 MNLLPCNPHGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEML 60
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVGGG PKYP N+VMIWDDLKK+ VI +EF+ VK V+LRRD+IVVVL+ +I
Sbjct: 61 FRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMI 120
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KV+TF P QLHVFET NPKGLCVLCPNSNNSLLAFPG +GHV LVDLA E+PP+D
Sbjct: 121 KVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVD 180
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSN- 236
I AHE LSCIALN GTR+ATAS KGTLIR+FDT SG + ELRRG + C N N
Sbjct: 181 IPAHEGVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQ 240
Query: 237 NSLLAFPGRKSGHVHLVDLADPER 260
++ L G VH+ DP+R
Sbjct: 241 DASLICVSSDHGTVHIFAAEDPKR 264
|
Homo sapiens (taxid: 9606) |
| >sp|Q640T2|WIPI3_XENTR WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus tropicalis GN=wdr45b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 357 bits (916), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 175/264 (66%), Positives = 205/264 (77%), Gaps = 4/264 (1%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL S+ + NGLLYAGFNQD GCFACGME+GFR+YN DPLKEKE+Q+F +GG+G+VEML
Sbjct: 1 MNLLPSNPHGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGYVEML 60
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVGGG PKYP N+VMIWDDLKK+ VI +EF+ VK V+LRRD+IVVVL+ +I
Sbjct: 61 FRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMI 120
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KV+TF P QLHVFET NPKGLCVLCPNSNNSLLAFPG +GHV +VDLA E+PP+D
Sbjct: 121 KVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVD 180
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSN- 236
I AHE LSCIALN GTR+ATAS KGTLIR+FDT SG + ELRRG + C N N
Sbjct: 181 IPAHEGILSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNE 240
Query: 237 NSLLAFPGRKSGHVHLVDLADPER 260
++ L G VH+ DP+R
Sbjct: 241 DASLICVSSDHGTVHIFAAEDPKR 264
|
Xenopus tropicalis (taxid: 8364) |
| >sp|Q7ZUW6|WIPI3_DANRE WD repeat domain phosphoinositide-interacting protein 3 OS=Danio rerio GN=wdr45b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (908), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 173/264 (65%), Positives = 203/264 (76%), Gaps = 4/264 (1%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL S+ + NGLLYAGFNQD GCFACGME+GFR+YN DPLKEKE+ +F +GG+GHVEML
Sbjct: 1 MNLLPSNPHGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKHEFLEGGVGHVEML 60
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVGGG PKYP N+VMIWDDLKK+ VI +EF+ VK V+LRRD+IVVVL+ +I
Sbjct: 61 FRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMI 120
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KV+TF P QLHVFET NPKGLCVLCPNSNNSLLAFP SGHV +VDLA+ E+PP+D
Sbjct: 121 KVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPATHSGHVQIVDLANTEKPPVD 180
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSN- 236
I AHE L CI LN GTR+ATAS KGTLIR+FDT +GQ + ELRRG + C N N
Sbjct: 181 IPAHEGVLCCITLNLQGTRIATASEKGTLIRIFDTSAGQLIQELRRGSQTANIYCINFNQ 240
Query: 237 NSLLAFPGRKSGHVHLVDLADPER 260
++ L G VH+ DP+R
Sbjct: 241 DASLICVSSDHGTVHIFAAEDPKR 264
|
Danio rerio (taxid: 7955) |
| >sp|Q68F45|WIPI3_XENLA WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus laevis GN=wdr45b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (906), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 173/264 (65%), Positives = 204/264 (77%), Gaps = 4/264 (1%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL S+ + NGLLY+GFNQD GCFACGME+GFR+YN DPLKEKE+Q+F +GG+ +VEML
Sbjct: 1 MNLLPSNPHGNGLLYSGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVSYVEML 60
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVGGG PKYP N+VMIWDDLKK+ VI +EF+ VK V+LRRD+IVVVL+ +I
Sbjct: 61 FRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMI 120
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KV+TF P QLHVFET NPKGLCVLCPNSNNSLLAFPG +GHV +VDLA E+PP+D
Sbjct: 121 KVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVD 180
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSN- 236
I AHE LSCIALN GTR+ATAS KGTLIR+FDT SG + ELRRG + C N N
Sbjct: 181 IPAHEGILSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNE 240
Query: 237 NSLLAFPGRKSGHVHLVDLADPER 260
++ L G VH+ DP+R
Sbjct: 241 DASLICVSSDHGTVHIFAAEDPKR 264
|
Xenopus laevis (taxid: 8355) |
| >sp|Q9Y484|WIPI4_HUMAN WD repeat domain phosphoinositide-interacting protein 4 OS=Homo sapiens GN=WDR45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 160/424 (37%), Positives = 222/424 (52%), Gaps = 90/424 (21%)
Query: 12 GLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTD-GGLGHVEMLFRCNYLALVG 70
G+ FNQDQ CF C ME G RIYN +PL EK D G +G VEML R N LALVG
Sbjct: 8 GVTSLRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSMGLVEMLHRSNLLALVG 67
Query: 71 GGTHPKYPNNRVMIWDDL------KKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYT 124
GG+ PK+ V+IWDD K+++V+ F PV VR+R DKIV+VL+ I VY+
Sbjct: 68 GGSSPKFSEISVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLKNRIYVYS 127
Query: 125 FIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE----RPPLD 180
F P++L F+T NPKGLC LCP+ LL FPG K G + LVDLA + P
Sbjct: 128 FPDNPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFT 187
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLL 240
I AH++ ++C++LNQ GT +A+AS KGTLIR+FDT S +KL ELRRG
Sbjct: 188 INAHQSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRG------------- 234
Query: 241 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300
DP A L CI + + L +S KGT
Sbjct: 235 ---------------TDP-----------ATLYCINFSHDSSFLCASSDKGT-------- 260
Query: 301 SGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASAS----FLPKYFSSSWS 356
VH+F++ + ++N++S+LA + +Y S WS
Sbjct: 261 -----------------------VHIFALKDT-RLNRRSALARVGKVGPMIGQYVDSQWS 296
Query: 357 FCKFQIPSDPPCICAFGADS----NSIIVICADGSYYKFMFNSKGECWRDVYIQFLEMTN 412
F +P++ CICAFG ++ NS+I IC DG+++K++F G C R+ + +L++ +
Sbjct: 297 LASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTPDGNCNREAFDVYLDICD 356
Query: 413 DSNL 416
D +
Sbjct: 357 DDDF 360
|
Homo sapiens (taxid: 9606) |
| >sp|Q91VM3|WIPI4_MOUSE WD repeat domain phosphoinositide-interacting protein 4 OS=Mus musculus GN=Wdr45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 269 bits (688), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 160/424 (37%), Positives = 220/424 (51%), Gaps = 90/424 (21%)
Query: 12 GLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTD-GGLGHVEMLFRCNYLALVG 70
G+ FNQDQ CF C ME G RIYN +PL EK D G +G VEML R N LALVG
Sbjct: 8 GVTSLHFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSVGLVEMLHRSNLLALVG 67
Query: 71 GGTHPKYPNNRVMIWDDL------KKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYT 124
GG+ PK+ V+IWDD K ++V+ F PV VR+R DKIV+VL I VY+
Sbjct: 68 GGSSPKFSEISVLIWDDAREGKDSKDKLVLEFTFTKPVLAVRMRHDKIVIVLRNRIYVYS 127
Query: 125 FIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE----RPPLD 180
F P++L F+T NPKGLC LCP+ LL FPG K G + LVDLA + P
Sbjct: 128 FPDSPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFT 187
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLL 240
I AH++ ++C++LNQ GT +A+AS KGTLIR+FDT S +KL ELRRG
Sbjct: 188 INAHQSDVACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRG------------- 234
Query: 241 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300
DP A L CI + + L +S KGT
Sbjct: 235 ---------------TDP-----------ATLYCINFSHDSSFLCASSDKGT-------- 260
Query: 301 SGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASAS----FLPKYFSSSWS 356
VH+F++ + ++N++S+LA + +Y S WS
Sbjct: 261 -----------------------VHIFALKDT-RLNRRSALARVGKVGPMIGQYVDSQWS 296
Query: 357 FCKFQIPSDPPCICAFGADS----NSIIVICADGSYYKFMFNSKGECWRDVYIQFLEMTN 412
F +P++ CICAFG ++ NS+I IC DG+++K++F G C R+ + +L++ +
Sbjct: 297 LASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTPDGNCNREAFDVYLDICD 356
Query: 413 DSNL 416
D +
Sbjct: 357 DEDF 360
|
Mus musculus (taxid: 10090) |
| >sp|Q6DCV0|WIPI4_XENLA WD repeat domain phosphoinositide-interacting protein 4 OS=Xenopus laevis GN=wdr45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (684), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 157/412 (38%), Positives = 220/412 (53%), Gaps = 87/412 (21%)
Query: 18 FNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTD-GGLGHVEMLFRCNYLALVGGGTHPK 76
FNQDQ CF C ME G RI+N +PL EK D G +G VEML RCN LALVGGG++PK
Sbjct: 12 FNQDQSCFCCAMETGVRIFNIEPLMEKGHLDQEQVGSVGQVEMLHRCNLLALVGGGSNPK 71
Query: 77 YPNNRVMIWDDL---KKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLH 133
+ + V+IWDD K ++V+ F PV VRLR DKIV+ L+ I VY+F P +L
Sbjct: 72 FSDISVLIWDDSRDGKDKLVLEFTFTKPVLSVRLRSDKIVIALKNRIYVYSFPDNPTKLF 131
Query: 134 VFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE----RPPLDIAAHEAPLS 189
F+T NPKGLC LCP+ LL FPG K G + LVDL + + P I AH++ L
Sbjct: 132 EFDTRDNPKGLCDLCPSLEKQLLIFPGHKCGSLQLVDLCNAKPGSSSAPFTINAHQSELG 191
Query: 190 CIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGH 249
C+A+NQ GT +A+AS KGTLIR+FDT + ++L ELRRG
Sbjct: 192 CLAINQQGTLVASASRKGTLIRLFDTQTREQLVELRRG---------------------- 229
Query: 250 VHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR 309
DP A L CI + + L ++S KGT
Sbjct: 230 ------TDP-----------ATLYCINFSHDSSFLCSSSDKGT----------------- 255
Query: 310 RDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASAS----FLPKYFSSSWSFCKFQIPSD 365
VH+F++ + K+N++S+LA + +Y S WS F +P++
Sbjct: 256 --------------VHIFALKDT-KLNRRSALARVGKVGPMIGQYVDSQWSLASFTVPAE 300
Query: 366 PPCICAFGADS----NSIIVICADGSYYKFMFNSKGECWRDVYIQFLEMTND 413
CICAFG ++ NS+I +C DG+++K++F +G C R+ + +L++ +D
Sbjct: 301 SACICAFGKNTSKNVNSVIAVCVDGTFHKYVFTPEGNCNREAFDVYLDICDD 352
|
Xenopus laevis (taxid: 8355) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 424 | ||||||
| 332027856 | 344 | WD repeat domain phosphoinositide-intera | 0.806 | 0.994 | 0.641 | 1e-147 | |
| 307202660 | 344 | WD repeat domain phosphoinositide-intera | 0.806 | 0.994 | 0.639 | 1e-147 | |
| 307168371 | 344 | WD repeat domain phosphoinositide-intera | 0.806 | 0.994 | 0.639 | 1e-146 | |
| 156549567 | 342 | PREDICTED: WD repeat domain phosphoinosi | 0.801 | 0.994 | 0.632 | 1e-146 | |
| 340720893 | 343 | PREDICTED: WD repeat domain phosphoinosi | 0.804 | 0.994 | 0.627 | 1e-143 | |
| 383853906 | 343 | PREDICTED: WD repeat domain phosphoinosi | 0.804 | 0.994 | 0.629 | 1e-142 | |
| 350397998 | 343 | PREDICTED: WD repeat domain phosphoinosi | 0.804 | 0.994 | 0.624 | 1e-142 | |
| 110760757 | 343 | PREDICTED: WD repeat domain phosphoinosi | 0.804 | 0.994 | 0.619 | 1e-141 | |
| 242013704 | 345 | WD repeat domain phosphoinositide-intera | 0.806 | 0.991 | 0.617 | 1e-141 | |
| 322779446 | 349 | hypothetical protein SINV_02152 [Solenop | 0.818 | 0.994 | 0.631 | 1e-140 |
| >gi|332027856|gb|EGI67914.1| WD repeat domain phosphoinositide-interacting protein 3 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 265/413 (64%), Positives = 299/413 (72%), Gaps = 71/413 (17%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL + + NGLLYAGFNQDQGCFACGME+GFR+YNCDPLKEKER DF+DGGLG+VEML
Sbjct: 1 MNLTAGNAHGNGLLYAGFNQDQGCFACGMENGFRVYNCDPLKEKERHDFSDGGLGYVEML 60
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVGGG P YP N+VMIWDD+KK I LEFNAPVKGV+LRRD+IVVVLEG+I
Sbjct: 61 FRCNYLALVGGGVKPMYPTNKVMIWDDIKKLPAITLEFNAPVKGVKLRRDRIVVVLEGVI 120
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KVYTF Q PQQLHVFETNPNP+GLCVLCPNSNNSLLAFPGRK+GHV ++DLA+ E+ PL+
Sbjct: 121 KVYTFTQNPQQLHVFETNPNPRGLCVLCPNSNNSLLAFPGRKNGHVQVIDLANTEKQPLN 180
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLL 240
I AHE PLSCIALN GTRLATAS KGTLIRVFDT +G +NELRRG
Sbjct: 181 IEAHETPLSCIALNLQGTRLATASEKGTLIRVFDTQNGNMINELRRG------------- 227
Query: 241 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300
A+ A + CI N T L
Sbjct: 228 --------------------------ANHANIYCINFNHDSTWL---------------- 245
Query: 301 SGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKF 360
CV+SDHGTVHVF+V E QK+N+QSSLASA+FLPKYFSSSWSFCKF
Sbjct: 246 ---------------CVASDHGTVHVFAV-EDQKLNRQSSLASATFLPKYFSSSWSFCKF 289
Query: 361 QIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWRDVYIQFLEMTND 413
Q+PS P C+CAFG D+NSIIVICADGSYYKF+FN+KGEC RD Y QFLE+T+D
Sbjct: 290 QVPSGPQCMCAFGQDNNSIIVICADGSYYKFVFNNKGECTRDFYAQFLELTDD 342
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307202660|gb|EFN81980.1| WD repeat domain phosphoinositide-interacting protein 3 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/413 (63%), Positives = 300/413 (72%), Gaps = 71/413 (17%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL + + NGLLYAGFNQDQGCFACGME+GFR+YNCDPLKEKER DF+DGGLG+VEML
Sbjct: 1 MNLTAGNPHGNGLLYAGFNQDQGCFACGMENGFRVYNCDPLKEKERHDFSDGGLGYVEML 60
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVGGG P YP N+VMIWDD+KK VI LEFNAPVKGV+LRRD+IVVVLEG+I
Sbjct: 61 FRCNYLALVGGGAKPLYPTNKVMIWDDIKKSPVITLEFNAPVKGVKLRRDRIVVVLEGVI 120
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KVYTF Q PQQLHVFETNPNP+GLCVLCPNSNNSLLAFPGRK+GHV ++DLA+ E+ PL+
Sbjct: 121 KVYTFTQNPQQLHVFETNPNPRGLCVLCPNSNNSLLAFPGRKNGHVQVIDLANTEKQPLN 180
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLL 240
I AHE PLSCIALN GTRLATAS KGTLIRVFDT +G +NELRRG
Sbjct: 181 IEAHETPLSCIALNLQGTRLATASEKGTLIRVFDTQNGNMINELRRG------------- 227
Query: 241 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300
A+ A + CI N T L
Sbjct: 228 --------------------------ANHANIYCINFNHDSTWL---------------- 245
Query: 301 SGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKF 360
CV+SDHGTVHVF+V E QK+N+QSSLASA+FLPKYFSSSWSFCKF
Sbjct: 246 ---------------CVASDHGTVHVFAV-EDQKLNRQSSLASATFLPKYFSSSWSFCKF 289
Query: 361 QIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWRDVYIQFLEMTND 413
Q+P P C+CAFG D+NSIIVICADGSYYKF+FN+KGEC RD+Y QFLE+T++
Sbjct: 290 QVPGGPQCMCAFGQDNNSIIVICADGSYYKFVFNNKGECTRDLYAQFLELTDE 342
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307168371|gb|EFN61554.1| WD repeat domain phosphoinositide-interacting protein 3 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 264/413 (63%), Positives = 298/413 (72%), Gaps = 71/413 (17%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL + + NGLLYAGFNQDQGCFACGME+GFR+YNCDPLKEKER DF+DGGLG+VEML
Sbjct: 1 MNLTAGNPHGNGLLYAGFNQDQGCFACGMENGFRVYNCDPLKEKERHDFSDGGLGYVEML 60
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVGGG P YP N+VMIWDD+KK I LEFNA VKGV+LRRD+IVVVLEG+I
Sbjct: 61 FRCNYLALVGGGAKPMYPTNKVMIWDDIKKLPAITLEFNASVKGVKLRRDRIVVVLEGVI 120
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KVYTF Q PQQLHVFETNPNP+GLCVLCPNSNNSLLAFPGRK+GHV ++DLA+ E+ PL+
Sbjct: 121 KVYTFTQNPQQLHVFETNPNPRGLCVLCPNSNNSLLAFPGRKNGHVQVIDLANTEKQPLN 180
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLL 240
I AHE PLSCIALN GTRLATAS KGTLIRVFDT +G +NELRRG
Sbjct: 181 IEAHETPLSCIALNLQGTRLATASEKGTLIRVFDTQNGNMINELRRG------------- 227
Query: 241 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300
A+ A + CI N T L
Sbjct: 228 --------------------------ANHANIYCINFNHDSTWL---------------- 245
Query: 301 SGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKF 360
CV+SDHGTVHVF+V E QK+N+QSSLASA+FLPKYFSSSWSFCKF
Sbjct: 246 ---------------CVASDHGTVHVFAV-EDQKLNRQSSLASATFLPKYFSSSWSFCKF 289
Query: 361 QIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWRDVYIQFLEMTND 413
Q+PS P C+CAFG D+NSIIVICADGSYYKF+FN+KGEC RD Y QFLE+T+D
Sbjct: 290 QVPSGPQCMCAFGQDNNSIIVICADGSYYKFVFNNKGECTRDFYAQFLELTDD 342
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156549567|ref|XP_001607565.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust.
Identities = 260/411 (63%), Positives = 297/411 (72%), Gaps = 71/411 (17%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL + + NGLLYAGFNQDQGCFACGME+G+R+YNCDPLKEKER DF +GGLG+VEML
Sbjct: 1 MNLSSGNPNGNGLLYAGFNQDQGCFACGMENGYRVYNCDPLKEKERHDFAEGGLGYVEML 60
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVGGG +P YP NRV+IWDD+KK I LEFNAPVKGV+LRRD+IV+VLEG+I
Sbjct: 61 FRCNYLALVGGGKNPMYPTNRVVIWDDIKKSPAITLEFNAPVKGVKLRRDRIVIVLEGVI 120
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KVYTF Q PQQLHVFETNPNP+GLCVLCPNSNNSLLAFPGRK+GHV ++DLA+ E+ PL+
Sbjct: 121 KVYTFTQNPQQLHVFETNPNPRGLCVLCPNSNNSLLAFPGRKNGHVQVIDLANTEKQPLN 180
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLL 240
I AHE PLSCIALN GTRLATAS KGTLIRVFD+ SG +NELRRG
Sbjct: 181 IEAHETPLSCIALNLQGTRLATASEKGTLIRVFDSQSGAMINELRRG------------- 227
Query: 241 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300
H A + CI N T
Sbjct: 228 --------------------------THHANIYCINFNHDST------------------ 243
Query: 301 SGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKF 360
+LCV+SDHGTVHVF+V E QK+N+QSSLASA+FLPKYFSSSWSFCKF
Sbjct: 244 -------------WLCVASDHGTVHVFAV-EDQKLNRQSSLASATFLPKYFSSSWSFCKF 289
Query: 361 QIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWRDVYIQFLEMT 411
Q+P P C+CAFG D+NSIIV+CADGSYYKF+FN+KGEC RDVY QFLEM+
Sbjct: 290 QVPDGPQCMCAFGTDNNSIIVVCADGSYYKFVFNNKGECTRDVYEQFLEMS 340
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340720893|ref|XP_003398863.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 259/413 (62%), Positives = 297/413 (71%), Gaps = 72/413 (17%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL T + + NGLLYAGFNQDQGCFACGME+GFR+YNCDPLKEK R F+DGGLG+VEML
Sbjct: 1 MNLTTGNPHGNGLLYAGFNQDQGCFACGMENGFRVYNCDPLKEKVRH-FSDGGLGYVEML 59
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVG GT P YP N+VMIWDDLKK I LEFNAPV+GV+LRRD+IVV+LEG+I
Sbjct: 60 FRCNYLALVGSGTKPMYPTNKVMIWDDLKKSPAITLEFNAPVRGVKLRRDRIVVILEGVI 119
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KVYTF Q PQQLHVFETNPNP+GLCVLCPNS+NSLLAFPGRK+GHV ++DLA+ E+ PL+
Sbjct: 120 KVYTFTQNPQQLHVFETNPNPRGLCVLCPNSSNSLLAFPGRKNGHVQVIDLANTEKQPLN 179
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLL 240
I AHE PLSCIALN GTRLATAS KGTLIRVF+T +G +NELRRG
Sbjct: 180 IEAHETPLSCIALNLQGTRLATASEKGTLIRVFETQTGNMINELRRG------------- 226
Query: 241 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300
A+ A + CI N T L
Sbjct: 227 --------------------------ANHANIYCINFNHDSTWL---------------- 244
Query: 301 SGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKF 360
CV+SDHGTVHVF+V E QK+N+QSSLASA+FLPKYFSSSWSFCKF
Sbjct: 245 ---------------CVASDHGTVHVFAV-EDQKLNRQSSLASATFLPKYFSSSWSFCKF 288
Query: 361 QIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWRDVYIQFLEMTND 413
Q+P P C+CAFG D+NSIIVICADGSYYKF+FN+KGEC +D Y QFLE+T+D
Sbjct: 289 QVPGGPQCMCAFGTDNNSIIVICADGSYYKFVFNNKGECTKDFYAQFLELTDD 341
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383853906|ref|XP_003702463.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 260/413 (62%), Positives = 295/413 (71%), Gaps = 72/413 (17%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL + + NGLLYAGFNQDQGCFACGME+GFR+YNCDPLKEK R F+DGGLG+VEML
Sbjct: 1 MNLTAGNPHGNGLLYAGFNQDQGCFACGMENGFRVYNCDPLKEKARL-FSDGGLGYVEML 59
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVG G P YP N+VMIWDDLKK I LEFNAPVKGV+LRRD+IVV+LEG+I
Sbjct: 60 FRCNYLALVGSGAKPMYPTNKVMIWDDLKKSPAITLEFNAPVKGVKLRRDRIVVILEGVI 119
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KVYTF Q PQQLHVFETNPNP+GLCVLCPNS+NSLLAFPGRK+GHV ++DLA+ E+ PL+
Sbjct: 120 KVYTFTQNPQQLHVFETNPNPRGLCVLCPNSSNSLLAFPGRKNGHVQVIDLANTEKQPLN 179
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLL 240
I AHE PLSCIALN GTRLATAS KGTLIRVF+T SG +NELRRG
Sbjct: 180 IEAHETPLSCIALNLQGTRLATASEKGTLIRVFETQSGNMINELRRG------------- 226
Query: 241 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300
A+ A + CI N T L
Sbjct: 227 --------------------------ANHANIYCINFNHDSTWL---------------- 244
Query: 301 SGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKF 360
CV+SDHGTVHVF+V E QK+N+QSSLASA+FLPKYFSSSWSFCKF
Sbjct: 245 ---------------CVASDHGTVHVFAV-EDQKLNRQSSLASATFLPKYFSSSWSFCKF 288
Query: 361 QIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWRDVYIQFLEMTND 413
Q+P P C+CAFG D+NSIIVICADGSYYKF+FN+KGEC RD Y QFLE+T+D
Sbjct: 289 QVPGGPQCMCAFGTDNNSIIVICADGSYYKFVFNNKGECTRDFYAQFLELTDD 341
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350397998|ref|XP_003485056.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 258/413 (62%), Positives = 296/413 (71%), Gaps = 72/413 (17%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL T + + NGLLYAGFNQDQGCFACGME+GFR+YNCDPLKEK R F+DGGLG+VEML
Sbjct: 1 MNLTTGNPHGNGLLYAGFNQDQGCFACGMENGFRVYNCDPLKEKVRH-FSDGGLGYVEML 59
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVG G P YP N+VMIWDDLKK I LEFNAPV+GV+LRRD+IVV+LEG+I
Sbjct: 60 FRCNYLALVGSGAKPMYPTNKVMIWDDLKKLPAITLEFNAPVRGVKLRRDRIVVILEGVI 119
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KVYTF Q PQQLHVFETNPNP+GLCVLCPNS+NSLLAFPGRK+GHV ++DLA+ E+ PL+
Sbjct: 120 KVYTFTQNPQQLHVFETNPNPRGLCVLCPNSSNSLLAFPGRKNGHVQVIDLANTEKQPLN 179
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLL 240
I AHE PLSCIALN GTRLATAS KGTLIRVF+T +G +NELRRG
Sbjct: 180 IEAHETPLSCIALNLQGTRLATASEKGTLIRVFETQTGNMINELRRG------------- 226
Query: 241 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300
A+ A + CI N T L
Sbjct: 227 --------------------------ANHANIYCINFNHDSTWL---------------- 244
Query: 301 SGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKF 360
CV+SDHGTVHVF+V E QK+N+QSSLASA+FLPKYFSSSWSFCKF
Sbjct: 245 ---------------CVASDHGTVHVFAV-EDQKLNRQSSLASATFLPKYFSSSWSFCKF 288
Query: 361 QIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWRDVYIQFLEMTND 413
Q+P P C+CAFG D+NSIIVICADGSYYKF+FN+KGEC +D Y QFLE+T+D
Sbjct: 289 QVPGGPQCMCAFGTDNNSIIVICADGSYYKFVFNNKGECTKDFYAQFLELTDD 341
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|110760757|ref|XP_396423.3| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like isoform 1 [Apis mellifera] gi|380028856|ref|XP_003698101.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 256/413 (61%), Positives = 296/413 (71%), Gaps = 72/413 (17%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL T + + NGLLYAGFNQDQGCF CGME+GFR+YNCDPLKEK R F+DGGLG+VEML
Sbjct: 1 MNLTTGNPHGNGLLYAGFNQDQGCFVCGMENGFRVYNCDPLKEKVRH-FSDGGLGYVEML 59
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVG G P YP N+VMIWDDLKK+ I LEFNAPVKGV+LRRD+IVV+LEG+I
Sbjct: 60 FRCNYLALVGSGAKPMYPTNKVMIWDDLKKRSAITLEFNAPVKGVKLRRDRIVVILEGVI 119
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KVYTF + PQQLHVFETNPNP+GLCVLCPNS+NSLLAFPGRK+GHV ++DLA+ E+ PL+
Sbjct: 120 KVYTFTRNPQQLHVFETNPNPRGLCVLCPNSSNSLLAFPGRKNGHVQVIDLANTEKQPLN 179
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLL 240
I AHE PLSCIALN GTRLATAS KGTLIRVF+T +G +NELRRG
Sbjct: 180 IEAHETPLSCIALNLQGTRLATASEKGTLIRVFETQTGSMINELRRG------------- 226
Query: 241 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300
A+ A + CI N T L
Sbjct: 227 --------------------------ANHANIYCINFNHDSTWL---------------- 244
Query: 301 SGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKF 360
CV+SDHGTVHVF+V E QK+N+QSSLASA+FLPKYFSSSWSFCKF
Sbjct: 245 ---------------CVASDHGTVHVFAV-EDQKLNRQSSLASATFLPKYFSSSWSFCKF 288
Query: 361 QIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWRDVYIQFLEMTND 413
Q+P P C+CAFG D+NSIIVICADGSYYKF+FN+KGEC ++ Y QFLE+T+D
Sbjct: 289 QVPGGPQCMCAFGTDNNSIIVICADGSYYKFVFNNKGECTKEFYAQFLELTDD 341
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242013704|ref|XP_002427542.1| WD repeat domain phosphoinositide-interacting protein, putative [Pediculus humanus corporis] gi|212511944|gb|EEB14804.1| WD repeat domain phosphoinositide-interacting protein, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 255/413 (61%), Positives = 296/413 (71%), Gaps = 71/413 (17%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL ++ +KNGLL+AGFNQDQGCFACGME+GFR+YNCDPLKEKERQDF DGGL +VEML
Sbjct: 1 MNLSVNNPHKNGLLFAGFNQDQGCFACGMENGFRVYNCDPLKEKERQDFVDGGLSYVEML 60
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVGGG PKYP NRVM+WDDLKKQ VI LEFNAPVK VRLRRD+IVVVLEG+I
Sbjct: 61 FRCNYLALVGGGPCPKYPPNRVMVWDDLKKQTVIALEFNAPVKAVRLRRDRIVVVLEGVI 120
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KVYTF Q PQQLHVFETN NPKGLCVLCP+S NSLLAFP RK+GHV LVDLA+ +RPP+D
Sbjct: 121 KVYTFTQHPQQLHVFETNSNPKGLCVLCPSSINSLLAFPSRKTGHVQLVDLANTDRPPID 180
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLL 240
I AHE+PLS I+LN GTR+ATA KGTLIRVFDT +G K+ ELRRG
Sbjct: 181 IPAHESPLSAISLNHGGTRIATAGQKGTLIRVFDTSTGCKITELRRG------------- 227
Query: 241 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300
A+ A + CI NQ + L
Sbjct: 228 --------------------------ANAADIYCINFNQDSSLL---------------- 245
Query: 301 SGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKF 360
CVSSDHGT+HVF V+++ K+NKQSSLASA+FLPKYF+S WSFC+F
Sbjct: 246 ---------------CVSSDHGTIHVFGVEDS-KLNKQSSLASATFLPKYFNSKWSFCRF 289
Query: 361 QIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWRDVYIQFLEMTND 413
Q+P P ICAFG D+ S+IV+C+DGS+YKF+F+SKGEC RDV QFL+MT+D
Sbjct: 290 QVPGGPKSICAFGQDNKSVIVVCSDGSFYKFVFDSKGECCRDVSAQFLDMTDD 342
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322779446|gb|EFZ09638.1| hypothetical protein SINV_02152 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 261/413 (63%), Positives = 292/413 (70%), Gaps = 66/413 (15%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL +T+ NGLLYAGFNQDQGCFACGME+GFR+YNCDPLKEKER DF+DGGLG+VEML
Sbjct: 1 MNLTAGNTHGNGLLYAGFNQDQGCFACGMENGFRVYNCDPLKEKERHDFSDGGLGYVEML 60
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVGGG P YP N+VMIWDD+KK I LEFNAPVKGV+LRRD+IVVVLEG+I
Sbjct: 61 FRCNYLALVGGGDKPMYPTNKVMIWDDIKKLPAITLEFNAPVKGVKLRRDRIVVVLEGVI 120
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KVYTF Q PQQLHVFETNPNP+GLCVLCPNSNNSLLAFPGRK+GHV DLA+ E+ PL+
Sbjct: 121 KVYTFTQNPQQLHVFETNPNPRGLCVLCPNSNNSLLAFPGRKNGHVQ--DLANTEKQPLN 178
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLL 240
I AHE PLSCIALN GTRLATAS KGTLIRVFDT +G +NELRRG
Sbjct: 179 IEAHETPLSCIALNLQGTRLATASEKGTLIRVFDTQNGNMINELRRG------------- 225
Query: 241 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300
+ H +I I N T L AS GT
Sbjct: 226 ------ANHA-------------NIYCSRTFYFSINFNHDSTWLCVASDHGT-------- 258
Query: 301 SGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKF 360
VHVF+V E QK+N+QSSLASA+FLPKYFSSSWSFCKF
Sbjct: 259 -----------------------VHVFAV-EDQKLNRQSSLASATFLPKYFSSSWSFCKF 294
Query: 361 QIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWRDVYIQFLEMTND 413
Q+P P C+CAFG D+NSIIVICADGSYYKF+FN+KGEC RD Y QFLE+T+D
Sbjct: 295 QVPGGPQCMCAFGQDNNSIIVICADGSYYKFVFNNKGECTRDFYAQFLELTDD 347
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 424 | ||||||
| FB|FBgn0037648 | 340 | CG11975 [Drosophila melanogast | 0.625 | 0.779 | 0.649 | 1.3e-91 | |
| UNIPROTKB|Q5ZL16 | 344 | WDR45B "WD repeat domain phosp | 0.613 | 0.755 | 0.662 | 3.5e-91 | |
| UNIPROTKB|Q5MNZ6 | 344 | WDR45B "WD repeat domain phosp | 0.613 | 0.755 | 0.666 | 4.5e-91 | |
| MGI|MGI:1914090 | 344 | Wdr45b "WD repeat domain 45B" | 0.613 | 0.755 | 0.666 | 4.5e-91 | |
| RGD|1305141 | 344 | Wdr45b "WD repeat domain 45B" | 0.613 | 0.755 | 0.666 | 4.5e-91 | |
| UNIPROTKB|Q640T2 | 344 | wdr45b "WD repeat domain phosp | 0.613 | 0.755 | 0.662 | 1.2e-90 | |
| ZFIN|ZDB-GENE-040426-863 | 344 | wdr45l "wdr45 like" [Danio rer | 0.613 | 0.755 | 0.655 | 6.5e-90 | |
| DICTYBASE|DDB_G0282581 | 350 | wdr45l "WD repeat domain phosp | 0.596 | 0.722 | 0.5 | 2.8e-80 | |
| ZFIN|ZDB-GENE-040426-990 | 358 | wdr45 "WD repeat domain 45" [D | 0.566 | 0.670 | 0.454 | 7.6e-74 | |
| UNIPROTKB|Q5M8E0 | 329 | wdr45 "WD repeat domain 45" [X | 0.485 | 0.626 | 0.479 | 4.2e-67 |
| FB|FBgn0037648 CG11975 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
Identities = 176/271 (64%), Positives = 207/271 (76%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL + Y NGLLYA FNQDQGCFAC + GFR+YNCDPLKEKERQ F +GGL HVEML
Sbjct: 1 MNLTEQNPYGNGLLYAAFNQDQGCFACATDTGFRVYNCDPLKEKERQYFPEGGLSHVEML 60
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVGGG P YP N+V++WDDLKK I L+FN PV+ VRLRRD+IVVVLEG+I
Sbjct: 61 FRCNYLALVGGGIRPLYPPNKVIVWDDLKKSPAISLDFNQPVRAVRLRRDRIVVVLEGVI 120
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KV+TF Q PQQLHVFET+ NP GLCVLCP+SN SLLAFPGR++GHV +VDLA+ ER PL+
Sbjct: 121 KVFTFTQQPQQLHVFETSSNPNGLCVLCPHSNKSLLAFPGRRTGHVQIVDLANTERAPLE 180
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNN 237
+ AHEA +SCIALN GTRLATA KGTLIR+FDT SG+K++ELRRG + C N N+
Sbjct: 181 VIAHEAGISCIALNLQGTRLATAGEKGTLIRIFDTESGKKVSELRRGSNHANIFCINFNH 240
Query: 238 -SLLAFPGRKSGHVHLVDLAD--PERPPLDI 265
S + G +H+ +L D P L I
Sbjct: 241 QSTMVVVASDHGTIHVFNLEDNKPRESSLPI 271
|
|
| UNIPROTKB|Q5ZL16 WDR45B "WD repeat domain phosphoinositide-interacting protein 3" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
Identities = 175/264 (66%), Positives = 206/264 (78%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL ++ + NGLLYAGFNQD GCFACGME+GFR+YN DPLKEKE+Q+F +GG+GHVEML
Sbjct: 1 MNLLPANPHGNGLLYAGFNQDHGCFACGMENGFRVYNADPLKEKEKQEFPEGGVGHVEML 60
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVGGG PKYP N+VMIWDDLKK+ VI +EF+ VK V+LRRD+IVVVL+ +I
Sbjct: 61 FRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMI 120
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KV+TF P QLHVFET NPKGLCVLCPNSNNSLLAFPG +GHV +VDLA+ E+PP+D
Sbjct: 121 KVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQIVDLANTEKPPVD 180
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSN- 236
I AHE LSCIALN GTR+ATAS KGTLIR+FDT SG + ELRRG + C N N
Sbjct: 181 IPAHEGILSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQ 240
Query: 237 NSLLAFPGRKSGHVHLVDLADPER 260
++ L G VH+ DP+R
Sbjct: 241 DASLICVSSDHGTVHIFAAEDPKR 264
|
|
| UNIPROTKB|Q5MNZ6 WDR45B "WD repeat domain phosphoinositide-interacting protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
Identities = 176/264 (66%), Positives = 204/264 (77%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL + + NGLLYAGFNQD GCFACGME+GFR+YN DPLKEKE+Q+F +GG+GHVEML
Sbjct: 1 MNLLPCNPHGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEML 60
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVGGG PKYP N+VMIWDDLKK+ VI +EF+ VK V+LRRD+IVVVL+ +I
Sbjct: 61 FRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMI 120
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KV+TF P QLHVFET NPKGLCVLCPNSNNSLLAFPG +GHV LVDLA E+PP+D
Sbjct: 121 KVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVD 180
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSN- 236
I AHE LSCIALN GTR+ATAS KGTLIR+FDT SG + ELRRG + C N N
Sbjct: 181 IPAHEGVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQ 240
Query: 237 NSLLAFPGRKSGHVHLVDLADPER 260
++ L G VH+ DP+R
Sbjct: 241 DASLICVSSDHGTVHIFAAEDPKR 264
|
|
| MGI|MGI:1914090 Wdr45b "WD repeat domain 45B" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
Identities = 176/264 (66%), Positives = 204/264 (77%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL + + NGLLYAGFNQD GCFACGME+GFR+YN DPLKEKE+Q+F +GG+GHVEML
Sbjct: 1 MNLLPCNPHGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEML 60
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVGGG PKYP N+VMIWDDLKK+ VI +EF+ VK V+LRRD+IVVVL+ +I
Sbjct: 61 FRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMI 120
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KV+TF P QLHVFET NPKGLCVLCPNSNNSLLAFPG +GHV LVDLA E+PP+D
Sbjct: 121 KVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVD 180
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSN- 236
I AHE LSCIALN GTR+ATAS KGTLIR+FDT SG + ELRRG + C N N
Sbjct: 181 IPAHEGVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQ 240
Query: 237 NSLLAFPGRKSGHVHLVDLADPER 260
++ L G VH+ DP+R
Sbjct: 241 DASLICVSSDHGTVHIFAAEDPKR 264
|
|
| RGD|1305141 Wdr45b "WD repeat domain 45B" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
Identities = 176/264 (66%), Positives = 204/264 (77%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL + + NGLLYAGFNQD GCFACGME+GFR+YN DPLKEKE+Q+F +GG+GHVEML
Sbjct: 1 MNLLPCNPHGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEML 60
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVGGG PKYP N+VMIWDDLKK+ VI +EF+ VK V+LRRD+IVVVL+ +I
Sbjct: 61 FRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMI 120
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KV+TF P QLHVFET NPKGLCVLCPNSNNSLLAFPG +GHV LVDLA E+PP+D
Sbjct: 121 KVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVD 180
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSN- 236
I AHE LSCIALN GTR+ATAS KGTLIR+FDT SG + ELRRG + C N N
Sbjct: 181 IPAHEGVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQ 240
Query: 237 NSLLAFPGRKSGHVHLVDLADPER 260
++ L G VH+ DP+R
Sbjct: 241 DASLICVSSDHGTVHIFAAEDPKR 264
|
|
| UNIPROTKB|Q640T2 wdr45b "WD repeat domain phosphoinositide-interacting protein 3" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
Identities = 175/264 (66%), Positives = 205/264 (77%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL S+ + NGLLYAGFNQD GCFACGME+GFR+YN DPLKEKE+Q+F +GG+G+VEML
Sbjct: 1 MNLLPSNPHGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGYVEML 60
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVGGG PKYP N+VMIWDDLKK+ VI +EF+ VK V+LRRD+IVVVL+ +I
Sbjct: 61 FRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMI 120
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KV+TF P QLHVFET NPKGLCVLCPNSNNSLLAFPG +GHV +VDLA E+PP+D
Sbjct: 121 KVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVD 180
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSN- 236
I AHE LSCIALN GTR+ATAS KGTLIR+FDT SG + ELRRG + C N N
Sbjct: 181 IPAHEGILSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNE 240
Query: 237 NSLLAFPGRKSGHVHLVDLADPER 260
++ L G VH+ DP+R
Sbjct: 241 DASLICVSSDHGTVHIFAAEDPKR 264
|
|
| ZFIN|ZDB-GENE-040426-863 wdr45l "wdr45 like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
Identities = 173/264 (65%), Positives = 203/264 (76%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL S+ + NGLLYAGFNQD GCFACGME+GFR+YN DPLKEKE+ +F +GG+GHVEML
Sbjct: 1 MNLLPSNPHGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKHEFLEGGVGHVEML 60
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCNYLALVGGG PKYP N+VMIWDDLKK+ VI +EF+ VK V+LRRD+IVVVL+ +I
Sbjct: 61 FRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMI 120
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
KV+TF P QLHVFET NPKGLCVLCPNSNNSLLAFP SGHV +VDLA+ E+PP+D
Sbjct: 121 KVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPATHSGHVQIVDLANTEKPPVD 180
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSN- 236
I AHE L CI LN GTR+ATAS KGTLIR+FDT +GQ + ELRRG + C N N
Sbjct: 181 IPAHEGVLCCITLNLQGTRIATASEKGTLIRIFDTSAGQLIQELRRGSQTANIYCINFNQ 240
Query: 237 NSLLAFPGRKSGHVHLVDLADPER 260
++ L G VH+ DP+R
Sbjct: 241 DASLICVSSDHGTVHIFAAEDPKR 264
|
|
| DICTYBASE|DDB_G0282581 wdr45l "WD repeat domain phosphoinositide-interacting protein 3" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 626 (225.4 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
Identities = 132/264 (50%), Positives = 172/264 (65%)
Query: 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML 60
MNL LL+A FNQD CFACG E GF I++CDP KE+ + F DGG+G VEML
Sbjct: 1 MNLANCKDKHPNLLFANFNQDYSCFACGTEKGFLIFSCDPFKERFGRVF-DGGVGIVEML 59
Query: 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLI 120
FRCN LA+VGGG P+Y N+VMIWDD + + + LEF + VK V+LRRD+IVVVLE +
Sbjct: 60 FRCNILAIVGGGKKPRYTPNQVMIWDDYQNKCIAKLEFKSEVKAVKLRRDRIVVVLENKV 119
Query: 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180
+Y F Q +H ET NPKG+C +CP + N +LA PG K G+VH V+L D ++ +
Sbjct: 120 YLYNFSDL-QLVHQLETTNNPKGICAICPGTVN-VLACPGLKPGYVH-VELYDLKQTQI- 175
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGL------CVLCPN 234
I AHE LS IALN+ GT LATAS KGTLIR+FDT +G+K+ ELRRG + N
Sbjct: 176 IPAHEGALSQIALNKDGTLLATASEKGTLIRIFDTATGEKVKELRRGTNRAEIYSIAFNN 235
Query: 235 SNNSLLAFPGRKSGHVHLVDLADP 258
+ +L + +GH+ + +A P
Sbjct: 236 DSTALCVSSDKNTGHIFDLSMAKP 259
|
|
| ZFIN|ZDB-GENE-040426-990 wdr45 "WD repeat domain 45" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 525 (189.9 bits), Expect = 7.6e-74, Sum P(2) = 7.6e-74
Identities = 116/255 (45%), Positives = 152/255 (59%)
Query: 18 FNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTD-GGLGHVEMLFRCNYLALVGGGTHPK 76
FNQDQ CF C ME G RIYN +PL EK D G + ML R N LA+VGGG +PK
Sbjct: 12 FNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSIALCSMLHRSNLLAVVGGGVNPK 71
Query: 77 YPNNRVMIWDDL------KKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQ 130
+ V+IWDD K ++V+ F PV VR+R DKI+++L+ I VY+F P
Sbjct: 72 FSEISVLIWDDAREVRDPKDKLVLEFTFTKPVLAVRMRHDKIIIILKNRIYVYSFPDNPV 131
Query: 131 QLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE----RPPLDIAAHEA 186
+L F+T NPKGLC LCP+ LL FPG K G + LVDL++ + P I AH++
Sbjct: 132 KLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLSNTKPGTSSAPFTINAHQS 191
Query: 187 PLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGL---CVLCPN-SNNSLLAF 242
++C+ALNQ G+ +A+AS KGTLIR+FDT + KL ELRRG + C N S++S
Sbjct: 192 EIACLALNQPGSVVASASRKGTLIRLFDTTTRDKLVELRRGTDPATLYCINFSHDSSFLC 251
Query: 243 PGRKSGHVHLVDLAD 257
G VH+ L D
Sbjct: 252 ASSDKGTVHIFALKD 266
|
|
| UNIPROTKB|Q5M8E0 wdr45 "WD repeat domain 45" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 460 (167.0 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
Identities = 104/217 (47%), Positives = 135/217 (62%)
Query: 52 GGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL---KKQVVICLEFNAPVKGVRLR 108
G +G VEML RCN LALVGGG++PK+ + V+IWDD K ++V+ F PV VRLR
Sbjct: 21 GSVGQVEMLHRCNLLALVGGGSNPKFSDISVLIWDDSRDGKDKLVLEFTFTKPVLSVRLR 80
Query: 109 RDKIVVVLEGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHL 168
+KIV+ L+ I VY+F P +L F+T NPKGLC LCP+ LL FPG K G + L
Sbjct: 81 SEKIVIALKNRIYVYSFPDNPTKLFEFDTRDNPKGLCDLCPSLEKQLLLFPGHKCGSLQL 140
Query: 169 VDL--ADP--ERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNEL 224
VDL A P P I AH++ L C+A+NQ GT +A+AS KGTLIR+FDT + ++L EL
Sbjct: 141 VDLCNAKPGSSSAPFTINAHQSELGCLAVNQQGTLVASASRKGTLIRLFDTQTREQLVEL 200
Query: 225 RRGL---CVLCPN-SNNSLLAFPGRKSGHVHLVDLAD 257
RRG + C N S++S G VH+ L D
Sbjct: 201 RRGTDPATLYCINFSHDSSFLCSSSDKGTVHIFALKD 237
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7ZUW6 | WIPI3_DANRE | No assigned EC number | 0.6553 | 0.6132 | 0.7558 | yes | N/A |
| Q5MNZ6 | WIPI3_HUMAN | No assigned EC number | 0.6666 | 0.6132 | 0.7558 | yes | N/A |
| Q6FXC1 | HSV2_CANGA | No assigned EC number | 0.3186 | 0.7240 | 0.6898 | yes | N/A |
| Q640T2 | WIPI3_XENTR | No assigned EC number | 0.6628 | 0.6132 | 0.7558 | yes | N/A |
| Q6CEI9 | HSV2_YARLI | No assigned EC number | 0.3023 | 0.7405 | 0.8746 | yes | N/A |
| Q9CR39 | WIPI3_MOUSE | No assigned EC number | 0.6666 | 0.6132 | 0.7558 | yes | N/A |
| Q6BUX9 | HSV2_DEBHA | No assigned EC number | 0.3234 | 0.7287 | 0.7152 | yes | N/A |
| Q5ZL16 | WIPI3_CHICK | No assigned EC number | 0.6628 | 0.6132 | 0.7558 | yes | N/A |
| Q5R7W0 | WIPI3_PONAB | No assigned EC number | 0.6704 | 0.6132 | 0.7558 | yes | N/A |
| Q9P3W2 | HSV2_SCHPO | No assigned EC number | 0.3034 | 0.6674 | 0.7774 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 424 | |||
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-13 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-10 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-10 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-09 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-08 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.002 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.1 bits (170), Expect = 5e-13
Identities = 56/347 (16%), Positives = 113/347 (32%), Gaps = 23/347 (6%)
Query: 72 GTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVV---LEGLIKVYTFIQC 128
+ ++ + + D +++ +G IK++
Sbjct: 38 SGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNG 97
Query: 129 PQQLHVFETNPNPKGLCVLCPNSN-NSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAP 187
+ + E + + + + NS+L G V L DL+ P + + H
Sbjct: 98 EKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSES 157
Query: 188 LSCIALNQTGTRLATASYKGTLIRVFDTGSG---QKLNELRRGLCVLCPNSNNSLLAFPG 244
++ +A + G LA+ S I+++D +G L + L + + LL G
Sbjct: 158 VTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG 217
Query: 245 RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK 304
G + L DL+ + ++ H + + G+ LA+ S GT IR++D S
Sbjct: 218 SSDGTIRLWDLSTGKLLRSTLSGHSDS-VVSSFSPDGSLLASGSSDGT-IRLWDLRSSSS 275
Query: 305 LNELRR-------------DSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKY- 350
L D L S GTV ++ ++ + ++ + +
Sbjct: 276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335
Query: 351 FSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKG 397
FS S D + + + F+ G
Sbjct: 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDG 382
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.0 bits (149), Expect = 2e-10
Identities = 69/338 (20%), Positives = 120/338 (35%), Gaps = 21/338 (6%)
Query: 73 THPKYPNNRVMIWD--DLKKQVVICLEFNAPVKGVRLRRDKIVVVLE----GLIKVYTFI 126
+ V +WD K + + V + D ++ G IK++
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186
Query: 127 QCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEA 186
+ L + + L + + LL G G + L DL+ + ++ H
Sbjct: 187 T-GKPLSTL--AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD 243
Query: 187 PLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG-----LCVLCPNSNNSLLA 241
+ + G+ LA+ S GT IR++D S L G L V L +
Sbjct: 244 S-VVSSFSPDGSLLASGSSDGT-IRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS 301
Query: 242 FPGRKSGHVHLVDLADPE-RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300
G G V L DL + L + HE P+S ++ + G+ L + IR++D
Sbjct: 302 --GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359
Query: 301 SGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKF 360
+G+ L L S+ L VS V S + + L++ S L +
Sbjct: 360 TGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTV-RLWDLSTGSLLRNLDGHTSRVTSL 418
Query: 361 QIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGE 398
D + + G+ N+I + S F+ G+
Sbjct: 419 DFSPDGKSLAS-GSSDNTIRLWDLKTSLKSVSFSPDGK 455
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 3e-10
Identities = 52/242 (21%), Positives = 101/242 (41%), Gaps = 23/242 (9%)
Query: 64 NYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVLEGL--- 119
YLA + + +WD + V L + V V D ++
Sbjct: 64 TYLASGSS-------DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKT 116
Query: 120 IKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL 179
IKV+ + L + + + + + + + +A + G + L DL +
Sbjct: 117 IKVWDVET-GKCLTTLRGHTDW--VNSVAFSPDGTFVAS-SSQDGTIKLWDLRT-GKCVA 171
Query: 180 DIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR---RGLCVLCPNSN 236
+ H ++ +A + G +L ++S GT I+++D +G+ L LR G+ + + +
Sbjct: 172 TLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRGHENGVNSVAFSPD 230
Query: 237 NSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRV 296
LLA G + G + + DL ++ H ++ +A + G RLA+ S GT IR+
Sbjct: 231 GYLLAS-GSEDGTIRVWDL-RTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGT-IRI 287
Query: 297 FD 298
+D
Sbjct: 288 WD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 34/200 (17%)
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-----RGLCVLCPNS 235
+ H ++C+A + G LAT S GT I+V+D +G+ L L+ +
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGT-IKVWDLETGELLRTLKGHTGPVRDVAASADG 63
Query: 236 NNSLLAFPGRKSGHVHLVDLADPERPPL--DIAAHEAPLSCIALNQTGTRLATASYKGTL 293
L + + L D E + H + +S +A + G L+++S T
Sbjct: 64 -TYLAS-----GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKT- 116
Query: 294 IRVFDTGSGQKLNELR------------RDSSYLCVSSDHGTVHVFSVDEAQKINK---- 337
I+V+D +G+ L LR D +++ SS GT+ ++ + + +
Sbjct: 117 IKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH 176
Query: 338 QSSLASASFLP---KYFSSS 354
+ S +F P K SSS
Sbjct: 177 TGEVNSVAFSPDGEKLLSSS 196
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 5e-08
Identities = 34/164 (20%), Positives = 67/164 (40%), Gaps = 21/164 (12%)
Query: 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNEL----RRGLCVLCPNSN 236
+ H ++ +A + GT +A++S GT I+++D +G+ + L V + +
Sbjct: 131 LRGHTDWVNSVAFSPDGTFVASSSQDGT-IKLWDLRTGKCVATLTGHTGEVNSV-AFSPD 188
Query: 237 NSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRV 296
L G + L DL+ + + HE ++ +A + G L + + IRV
Sbjct: 189 GEKLLSSSS-DGTIKLWDLST-GKCLGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRV 245
Query: 297 FDTGSGQKLNELRR------------DSSYLCVSSDHGTVHVFS 328
+D +G+ + L D L S GT+ ++
Sbjct: 246 WDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 42/244 (17%), Positives = 75/244 (30%), Gaps = 66/244 (27%)
Query: 21 DQGCFACGMEDGF-RIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLA----LVGGGTHP 75
D A G D R++ D + + T GH + + L
Sbjct: 62 DGTYLASGSSDKTIRLW--DLETGECVRTLT----GHTSYVSSVAFSPDGRILSSSSR-- 113
Query: 76 KYPNNRVMIWDDLKKQVVICLEF-NAPVKGVRLRRDKIVVV---LEGLIKVY-------- 123
+ + +WD + + L V V D V +G IK++
Sbjct: 114 ---DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170
Query: 124 -TF--------------------------------IQCPQQLHVFETNPNPKGLCVLCPN 150
T + + L + N + + +
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG--VNSVAFS 228
Query: 151 SNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLI 210
+ LLA G + G + + DL ++ H ++ +A + G RLA+ S GT I
Sbjct: 229 PDGYLLAS-GSEDGTIRVWDL-RTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGT-I 285
Query: 211 RVFD 214
R++D
Sbjct: 286 RIWD 289
|
Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 424 | |||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0319|consensus | 775 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0306|consensus | 888 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG2111|consensus | 346 | 100.0 | ||
| KOG0319|consensus | 775 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0273|consensus | 524 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0265|consensus | 338 | 100.0 | ||
| KOG0306|consensus | 888 | 100.0 | ||
| KOG0284|consensus | 464 | 100.0 | ||
| KOG0296|consensus | 399 | 100.0 | ||
| KOG0276|consensus | 794 | 100.0 | ||
| KOG0293|consensus | 519 | 100.0 | ||
| KOG0273|consensus | 524 | 100.0 | ||
| KOG0643|consensus | 327 | 100.0 | ||
| KOG0285|consensus | 460 | 100.0 | ||
| KOG0263|consensus | 707 | 100.0 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0296|consensus | 399 | 100.0 | ||
| KOG0295|consensus | 406 | 100.0 | ||
| KOG0295|consensus | 406 | 100.0 | ||
| KOG1408|consensus | 1080 | 100.0 | ||
| KOG0284|consensus | 464 | 100.0 | ||
| KOG0645|consensus | 312 | 100.0 | ||
| KOG1539|consensus | 910 | 100.0 | ||
| KOG0285|consensus | 460 | 100.0 | ||
| KOG0266|consensus | 456 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0645|consensus | 312 | 100.0 | ||
| KOG0316|consensus | 307 | 100.0 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG2106|consensus | 626 | 100.0 | ||
| KOG0266|consensus | 456 | 100.0 | ||
| KOG0265|consensus | 338 | 100.0 | ||
| KOG0278|consensus | 334 | 100.0 | ||
| KOG0282|consensus | 503 | 100.0 | ||
| KOG0316|consensus | 307 | 100.0 | ||
| KOG0263|consensus | 707 | 100.0 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0282|consensus | 503 | 100.0 | ||
| KOG0276|consensus | 794 | 100.0 | ||
| KOG2110|consensus | 391 | 100.0 | ||
| KOG0281|consensus | 499 | 100.0 | ||
| KOG0293|consensus | 519 | 100.0 | ||
| KOG0292|consensus | 1202 | 100.0 | ||
| KOG0277|consensus | 311 | 100.0 | ||
| KOG1407|consensus | 313 | 100.0 | ||
| KOG0640|consensus | 430 | 100.0 | ||
| KOG0278|consensus | 334 | 100.0 | ||
| KOG0268|consensus | 433 | 100.0 | ||
| KOG0305|consensus | 484 | 100.0 | ||
| KOG0292|consensus | 1202 | 100.0 | ||
| KOG0275|consensus | 508 | 100.0 | ||
| KOG0277|consensus | 311 | 100.0 | ||
| KOG0281|consensus | 499 | 100.0 | ||
| KOG1446|consensus | 311 | 99.98 | ||
| KOG1446|consensus | 311 | 99.98 | ||
| KOG0310|consensus | 487 | 99.97 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0313|consensus | 423 | 99.97 | ||
| KOG0313|consensus | 423 | 99.97 | ||
| KOG0274|consensus | 537 | 99.97 | ||
| KOG0772|consensus | 641 | 99.97 | ||
| KOG2096|consensus | 420 | 99.97 | ||
| KOG1539|consensus | 910 | 99.97 | ||
| KOG0288|consensus | 459 | 99.97 | ||
| KOG1407|consensus | 313 | 99.97 | ||
| KOG0275|consensus | 508 | 99.97 | ||
| KOG0310|consensus | 487 | 99.97 | ||
| KOG0973|consensus | 942 | 99.97 | ||
| KOG0643|consensus | 327 | 99.97 | ||
| KOG1063|consensus | 764 | 99.97 | ||
| KOG0288|consensus | 459 | 99.97 | ||
| KOG2048|consensus | 691 | 99.97 | ||
| KOG0640|consensus | 430 | 99.97 | ||
| KOG0289|consensus | 506 | 99.97 | ||
| KOG0305|consensus | 484 | 99.97 | ||
| KOG0283|consensus | 712 | 99.97 | ||
| KOG1063|consensus | 764 | 99.96 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG2106|consensus | 626 | 99.96 | ||
| KOG0283|consensus | 712 | 99.96 | ||
| KOG0308|consensus | 735 | 99.96 | ||
| KOG0289|consensus | 506 | 99.96 | ||
| KOG1408|consensus | 1080 | 99.96 | ||
| KOG0274|consensus | 537 | 99.96 | ||
| KOG2096|consensus | 420 | 99.96 | ||
| KOG0647|consensus | 347 | 99.96 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0973|consensus | 942 | 99.96 | ||
| KOG1445|consensus | 1012 | 99.95 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0269|consensus | 839 | 99.95 | ||
| KOG1273|consensus | 405 | 99.95 | ||
| KOG0641|consensus | 350 | 99.95 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0300|consensus | 481 | 99.95 | ||
| KOG0299|consensus | 479 | 99.95 | ||
| KOG4283|consensus | 397 | 99.95 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.95 | |
| KOG0299|consensus | 479 | 99.95 | ||
| KOG0294|consensus | 362 | 99.95 | ||
| KOG2048|consensus | 691 | 99.95 | ||
| KOG0646|consensus | 476 | 99.95 | ||
| KOG0294|consensus | 362 | 99.95 | ||
| KOG0264|consensus | 422 | 99.95 | ||
| KOG0647|consensus | 347 | 99.95 | ||
| KOG0639|consensus | 705 | 99.95 | ||
| KOG0639|consensus | 705 | 99.95 | ||
| KOG0300|consensus | 481 | 99.95 | ||
| KOG0301|consensus | 745 | 99.94 | ||
| KOG1036|consensus | 323 | 99.94 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.94 | |
| KOG0268|consensus | 433 | 99.94 | ||
| KOG0772|consensus | 641 | 99.94 | ||
| KOG0646|consensus | 476 | 99.94 | ||
| KOG0641|consensus | 350 | 99.94 | ||
| KOG0269|consensus | 839 | 99.94 | ||
| KOG1332|consensus | 299 | 99.94 | ||
| KOG2055|consensus | 514 | 99.94 | ||
| KOG1274|consensus | 933 | 99.94 | ||
| KOG0308|consensus | 735 | 99.94 | ||
| KOG1036|consensus | 323 | 99.93 | ||
| KOG0264|consensus | 422 | 99.93 | ||
| KOG0650|consensus | 733 | 99.93 | ||
| KOG0301|consensus | 745 | 99.93 | ||
| KOG0270|consensus | 463 | 99.93 | ||
| KOG1963|consensus | 792 | 99.93 | ||
| KOG1538|consensus | 1081 | 99.92 | ||
| KOG4378|consensus | 673 | 99.92 | ||
| KOG1274|consensus | 933 | 99.92 | ||
| KOG2919|consensus | 406 | 99.92 | ||
| KOG1332|consensus | 299 | 99.92 | ||
| KOG2055|consensus | 514 | 99.92 | ||
| KOG4283|consensus | 397 | 99.92 | ||
| KOG1273|consensus | 405 | 99.92 | ||
| KOG0321|consensus | 720 | 99.91 | ||
| KOG1445|consensus | 1012 | 99.91 | ||
| KOG4328|consensus | 498 | 99.91 | ||
| KOG0650|consensus | 733 | 99.91 | ||
| KOG4378|consensus | 673 | 99.9 | ||
| KOG4328|consensus | 498 | 99.9 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.9 | |
| KOG0267|consensus | 825 | 99.9 | ||
| KOG0321|consensus | 720 | 99.9 | ||
| KOG2445|consensus | 361 | 99.89 | ||
| KOG4227|consensus | 609 | 99.89 | ||
| KOG0267|consensus | 825 | 99.89 | ||
| KOG1034|consensus | 385 | 99.88 | ||
| KOG1034|consensus | 385 | 99.88 | ||
| KOG0270|consensus | 463 | 99.88 | ||
| KOG2919|consensus | 406 | 99.88 | ||
| KOG1007|consensus | 370 | 99.87 | ||
| KOG0302|consensus | 440 | 99.87 | ||
| KOG1188|consensus | 376 | 99.87 | ||
| KOG1188|consensus | 376 | 99.87 | ||
| KOG0302|consensus | 440 | 99.87 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.87 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.86 | |
| KOG1009|consensus | 434 | 99.85 | ||
| KOG2445|consensus | 361 | 99.85 | ||
| KOG0307|consensus | 1049 | 99.85 | ||
| KOG0322|consensus | 323 | 99.85 | ||
| KOG0307|consensus | 1049 | 99.85 | ||
| KOG4497|consensus | 447 | 99.84 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG1538|consensus | 1081 | 99.84 | ||
| KOG4497|consensus | 447 | 99.84 | ||
| KOG0644|consensus | 1113 | 99.83 | ||
| KOG1007|consensus | 370 | 99.83 | ||
| KOG0649|consensus | 325 | 99.83 | ||
| KOG0303|consensus | 472 | 99.82 | ||
| KOG0290|consensus | 364 | 99.81 | ||
| KOG1009|consensus | 434 | 99.81 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.81 | |
| KOG0290|consensus | 364 | 99.81 | ||
| KOG4227|consensus | 609 | 99.8 | ||
| KOG1517|consensus | 1387 | 99.8 | ||
| KOG1310|consensus | 758 | 99.8 | ||
| KOG0649|consensus | 325 | 99.8 | ||
| KOG1963|consensus | 792 | 99.8 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.79 | |
| KOG1272|consensus | 545 | 99.79 | ||
| KOG1587|consensus | 555 | 99.79 | ||
| KOG1334|consensus | 559 | 99.79 | ||
| KOG2315|consensus | 566 | 99.79 | ||
| KOG0322|consensus | 323 | 99.78 | ||
| KOG2111|consensus | 346 | 99.78 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.78 | |
| KOG2110|consensus | 391 | 99.78 | ||
| KOG1587|consensus | 555 | 99.78 | ||
| KOG0642|consensus | 577 | 99.78 | ||
| KOG0771|consensus | 398 | 99.76 | ||
| KOG1517|consensus | 1387 | 99.76 | ||
| KOG1524|consensus | 737 | 99.76 | ||
| KOG1240|consensus | 1431 | 99.75 | ||
| KOG0303|consensus | 472 | 99.74 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.74 | |
| KOG0642|consensus | 577 | 99.74 | ||
| KOG2314|consensus | 698 | 99.73 | ||
| KOG0771|consensus | 398 | 99.73 | ||
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.73 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.73 | |
| KOG2139|consensus | 445 | 99.73 | ||
| KOG0644|consensus | 1113 | 99.72 | ||
| KOG1310|consensus | 758 | 99.71 | ||
| KOG1523|consensus | 361 | 99.71 | ||
| KOG2321|consensus | 703 | 99.7 | ||
| KOG1272|consensus | 545 | 99.69 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.69 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.68 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.67 | |
| KOG1524|consensus | 737 | 99.67 | ||
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.66 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.65 | |
| KOG1523|consensus | 361 | 99.65 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.65 | |
| KOG1354|consensus | 433 | 99.64 | ||
| KOG2394|consensus | 636 | 99.64 | ||
| KOG1334|consensus | 559 | 99.64 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.63 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.63 | |
| KOG3881|consensus | 412 | 99.63 | ||
| KOG2139|consensus | 445 | 99.63 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.62 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.62 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.62 | |
| KOG2394|consensus | 636 | 99.61 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.6 | |
| KOG1240|consensus | 1431 | 99.6 | ||
| KOG2321|consensus | 703 | 99.6 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.59 | |
| KOG2315|consensus | 566 | 99.59 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.59 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.57 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.55 | |
| KOG2314|consensus | 698 | 99.53 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.53 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.53 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG0974|consensus | 967 | 99.53 | ||
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG3881|consensus | 412 | 99.52 | ||
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.52 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.5 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.5 | |
| KOG2041|consensus | 1189 | 99.49 | ||
| KOG1912|consensus | 1062 | 99.49 | ||
| KOG1409|consensus | 404 | 99.49 | ||
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.48 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.47 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.46 | |
| KOG1409|consensus | 404 | 99.44 | ||
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.44 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.42 | |
| KOG0974|consensus | 967 | 99.42 | ||
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.4 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.39 | |
| KOG4547|consensus | 541 | 99.38 | ||
| KOG1354|consensus | 433 | 99.38 | ||
| KOG1064|consensus | 2439 | 99.36 | ||
| KOG0309|consensus | 1081 | 99.36 | ||
| KOG1912|consensus | 1062 | 99.34 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.33 | |
| KOG4714|consensus | 319 | 99.33 | ||
| KOG0280|consensus | 339 | 99.3 | ||
| KOG4532|consensus | 344 | 99.29 | ||
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.28 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.27 | |
| KOG4547|consensus | 541 | 99.27 | ||
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.27 | |
| KOG0309|consensus | 1081 | 99.25 | ||
| KOG2041|consensus | 1189 | 99.24 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.24 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.24 | |
| KOG4190|consensus | 1034 | 99.21 | ||
| KOG0280|consensus | 339 | 99.21 | ||
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.2 | |
| KOG4190|consensus | 1034 | 99.2 | ||
| KOG1064|consensus | 2439 | 99.14 | ||
| KOG3914|consensus | 390 | 99.11 | ||
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.1 | |
| KOG0882|consensus | 558 | 99.09 | ||
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.09 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 99.04 | |
| KOG3914|consensus | 390 | 99.03 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.02 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.02 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.0 | |
| KOG0882|consensus | 558 | 99.0 | ||
| KOG4714|consensus | 319 | 98.96 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.96 | |
| KOG1275|consensus | 1118 | 98.95 | ||
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.91 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.91 | |
| KOG4532|consensus | 344 | 98.9 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.89 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.82 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.79 | |
| KOG2066|consensus | 846 | 98.78 | ||
| KOG1832|consensus | 1516 | 98.78 | ||
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.77 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.75 | |
| KOG1645|consensus | 463 | 98.74 | ||
| KOG2695|consensus | 425 | 98.74 | ||
| KOG1645|consensus | 463 | 98.74 | ||
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.69 | |
| KOG1920|consensus | 1265 | 98.69 | ||
| KOG1832|consensus | 1516 | 98.68 | ||
| KOG3621|consensus | 726 | 98.68 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.67 | |
| KOG2114|consensus | 933 | 98.67 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.66 | |
| KOG1920|consensus | 1265 | 98.65 | ||
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.62 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.6 | |
| KOG4649|consensus | 354 | 98.59 | ||
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.59 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.55 | |
| KOG2695|consensus | 425 | 98.54 | ||
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.53 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.52 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 98.51 | |
| KOG4649|consensus | 354 | 98.48 | ||
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.44 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.42 | |
| KOG3617|consensus | 1416 | 98.4 | ||
| KOG2114|consensus | 933 | 98.32 | ||
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.29 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.29 | |
| KOG1275|consensus | 1118 | 98.27 | ||
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.25 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.24 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.22 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.18 | |
| KOG3617|consensus | 1416 | 98.17 | ||
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.17 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.17 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.16 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.14 | |
| KOG3621|consensus | 726 | 98.05 | ||
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.03 | |
| KOG1897|consensus | 1096 | 98.03 | ||
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.02 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.02 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.93 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.92 | |
| KOG2066|consensus | 846 | 97.91 | ||
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.9 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.87 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.84 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.79 | |
| KOG1008|consensus | 783 | 97.77 | ||
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.74 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.73 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.71 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.7 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.66 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.62 | |
| KOG2395|consensus | 644 | 97.55 | ||
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.53 | |
| KOG1008|consensus | 783 | 97.52 | ||
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.5 | |
| KOG2395|consensus | 644 | 97.49 | ||
| KOG4640|consensus | 665 | 97.43 | ||
| KOG4640|consensus | 665 | 97.42 | ||
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.4 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.39 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.34 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.27 | |
| KOG1897|consensus | 1096 | 97.24 | ||
| KOG2444|consensus | 238 | 97.23 | ||
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.2 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.15 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.12 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.01 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.01 | |
| KOG2444|consensus | 238 | 96.97 | ||
| KOG4441|consensus | 571 | 96.79 | ||
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.78 | |
| KOG2079|consensus | 1206 | 96.74 | ||
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.63 | |
| KOG2280|consensus | 829 | 96.61 | ||
| PHA02713 | 557 | hypothetical protein; Provisional | 96.57 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 96.57 | |
| KOG4499|consensus | 310 | 96.53 | ||
| KOG4499|consensus | 310 | 96.49 | ||
| PHA02713 | 557 | hypothetical protein; Provisional | 96.41 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.36 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 96.34 | |
| PRK10115 | 686 | protease 2; Provisional | 96.29 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.26 | |
| KOG4441|consensus | 571 | 96.22 | ||
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.14 | |
| KOG1916|consensus | 1283 | 96.07 | ||
| KOG2079|consensus | 1206 | 96.01 | ||
| KOG2280|consensus | 829 | 95.95 | ||
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 95.91 | |
| KOG2247|consensus | 615 | 95.91 | ||
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.72 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.68 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.51 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 95.42 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.41 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 95.36 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 95.29 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.03 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 95.0 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 94.93 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.91 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.9 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 94.88 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 94.82 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.69 | |
| KOG2377|consensus | 657 | 94.66 | ||
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.48 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.47 | |
| PRK10115 | 686 | protease 2; Provisional | 94.45 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 94.43 | |
| KOG2377|consensus | 657 | 94.32 | ||
| PHA03098 | 534 | kelch-like protein; Provisional | 94.32 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.25 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 94.2 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 94.0 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.98 | |
| KOG2247|consensus | 615 | 93.6 | ||
| KOG4460|consensus | 741 | 93.55 | ||
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 93.51 | |
| KOG1900|consensus | 1311 | 93.46 | ||
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 93.4 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 93.36 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 92.99 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 92.93 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 92.68 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 92.67 | |
| KOG3630|consensus | 1405 | 92.34 | ||
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 92.17 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 92.14 | |
| KOG4460|consensus | 741 | 91.71 | ||
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 91.37 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 91.32 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 91.32 | |
| KOG1916|consensus | 1283 | 90.99 | ||
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 90.97 | |
| KOG3630|consensus | 1405 | 90.96 | ||
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 90.93 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 90.81 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 90.61 | |
| KOG1983|consensus | 993 | 89.54 | ||
| PHA02790 | 480 | Kelch-like protein; Provisional | 89.41 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 88.86 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 88.75 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 88.48 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 88.41 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 88.41 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 88.39 | |
| KOG1520|consensus | 376 | 88.16 | ||
| PHA02790 | 480 | Kelch-like protein; Provisional | 87.91 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 87.58 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 87.31 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 87.16 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 86.99 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 85.97 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 85.4 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 84.72 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 84.64 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 84.29 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 84.07 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 84.03 | |
| KOG1898|consensus | 1205 | 83.9 | ||
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 83.79 | |
| KOG1520|consensus | 376 | 83.59 | ||
| PRK13684 | 334 | Ycf48-like protein; Provisional | 83.21 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 82.88 | |
| COG4880 | 603 | Secreted protein containing C-terminal beta-propel | 82.59 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 81.15 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 80.99 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 80.92 | |
| KOG0985|consensus | 1666 | 80.38 |
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=337.76 Aligned_cols=317 Identities=17% Similarity=0.206 Sum_probs=272.5
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEE
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVM 83 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~ 83 (424)
.+.||.++|.|++|+|+|.+||+|+.|. +|+||+++..+......|..-|.+++|+||++.+|+.+ .||+|+
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~-------~dg~I~ 182 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGS-------KDGSIR 182 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccc-------cCCeEE
Confidence 3789999999999999999999999988 99999999999888889999999999999999999888 689999
Q ss_pred EEECCCCcEEE-EEe-ecCCeEEEEecCCceEEEeeccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeec
Q psy3710 84 IWDDLKKQVVI-CLE-FNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGR 161 (424)
Q Consensus 84 iwd~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (424)
+||.++|+.+- .+. |...|.+++|.|-. ..|..+++++ ++
T Consensus 183 lwdpktg~~~g~~l~gH~K~It~Lawep~h-------------------------------------l~p~~r~las-~s 224 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALRGHKKWITALAWEPLH-------------------------------------LVPPCRRLAS-SS 224 (480)
T ss_pred EecCCCCCcccccccCcccceeEEeecccc-------------------------------------cCCCccceec-cc
Confidence 99999887654 333 66666666664311 1234567887 99
Q ss_pred cCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeee------
Q psy3710 162 KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLC------ 232 (424)
Q Consensus 162 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~------ 232 (424)
.||.++|||+..+ ..+..+.+|..+|+|+.|-.+| ++++++.|++ |++|+...|++.+++++| ++.++
T Consensus 225 kDg~vrIWd~~~~-~~~~~lsgHT~~VTCvrwGG~g-liySgS~Drt-Ikvw~a~dG~~~r~lkGHahwvN~lalsTdy~ 301 (480)
T KOG0271|consen 225 KDGSVRIWDTKLG-TCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRT-IKVWRALDGKLCRELKGHAHWVNHLALSTDYV 301 (480)
T ss_pred CCCCEEEEEccCc-eEEEEeccCccceEEEEEcCCc-eEEecCCCce-EEEEEccchhHHHhhcccchheeeeeccchhh
Confidence 9999999999976 7888999999999999998664 9999999999 999999999999888876 33333
Q ss_pred -----ecCCCCe------------------------EEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCE
Q psy3710 233 -----PNSNNSL------------------------LAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTR 283 (424)
Q Consensus 233 -----~~~~~~~------------------------~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 283 (424)
|.|.+.. .+++|++|.++.+|+....++++..+.+|...|+.+.||||+++
T Consensus 302 LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~ 381 (480)
T KOG0271|consen 302 LRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRY 381 (480)
T ss_pred hhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccE
Confidence 3333333 57789999999999999888888888999999999999999999
Q ss_pred EEEEeCCCcEEEEEECCCCceeeeec------------cCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccc
Q psy3710 284 LATASYKGTLIRVFDTGSGQKLNELR------------RDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYF 351 (424)
Q Consensus 284 l~~~~~d~~~i~iwd~~~~~~~~~~~------------~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 351 (424)
+|++|-|.. |++|+.++|+-+.+|+ .|.++|++|+.|.++++|++.+.+....++.
T Consensus 382 IASaSFDkS-VkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG----------- 449 (480)
T KOG0271|consen 382 IASASFDKS-VKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG----------- 449 (480)
T ss_pred EEEeecccc-eeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC-----------
Confidence 999999999 9999999999888764 5899999999999999999999655443332
Q ss_pred cCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEE
Q psy3710 352 SSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFM 392 (424)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~ 392 (424)
|...|-.+.|+|||..+++|+.|..+++|.
T Consensus 450 -----------h~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 450 -----------HADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -----------CCceEEEEEecCCCceeecCCCceEEEeec
Confidence 456677899999999999999999999995
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-47 Score=305.10 Aligned_cols=297 Identities=16% Similarity=0.217 Sum_probs=256.4
Q ss_pred EEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEE
Q psy3710 94 ICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLV 169 (424)
Q Consensus 94 ~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~ 169 (424)
..+. |.++|.+++|+|++..+++ |.++++||+. +..+..+.++|.+. +.+++|+|||+.||+ |+.||.|++|
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~-TeTp~~t~KgH~~W--VlcvawsPDgk~iAS-G~~dg~I~lw 184 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLD-TETPLFTCKGHKNW--VLCVAWSPDGKKIAS-GSKDGSIRLW 184 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccC-CCCcceeecCCccE--EEEEEECCCcchhhc-cccCCeEEEe
Confidence 3444 7899999999999999987 8899999997 88899999999855 899999999999998 9999999999
Q ss_pred eCCCCCCCCcccccccCCeEEEEEcc-----CCCEEEEEecCCcEEEEEECCCcceeeEEeccee-eeeecCCCCeEEEE
Q psy3710 170 DLADPERPPLDIAAHEAPLSCIALNQ-----TGTRLATASYKGTLIRVFDTGSGQKLNELRRGLC-VLCPNSNNSLLAFP 243 (424)
Q Consensus 170 d~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 243 (424)
|..++++....+.+|...|++++|.| ..++|++++.||. ++|||+..++++..+.+|.. ..|+-..|..++++
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~-vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliyS 263 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS-VRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYS 263 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCC-EEEEEccCceEEEEeccCccceEEEEEcCCceEEe
Confidence 99999888889999999999999976 5689999999999 99999999999999998843 34555567889999
Q ss_pred eecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEc-----------CCCC-------------------------EEEEE
Q psy3710 244 GRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALN-----------QTGT-------------------------RLATA 287 (424)
Q Consensus 244 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~~-------------------------~l~~~ 287 (424)
|+.|++|++|+...+. ..+.+++|...|+.++.+ |.++ .|++|
T Consensus 264 gS~DrtIkvw~a~dG~-~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg 342 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGK-LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG 342 (480)
T ss_pred cCCCceEEEEEccchh-HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence 9999999999999865 567888999999999876 3343 49999
Q ss_pred eCCCcEEEEEECCCCc-ee------------eeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCC
Q psy3710 288 SYKGTLIRVFDTGSGQ-KL------------NELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSS 354 (424)
Q Consensus 288 ~~d~~~i~iwd~~~~~-~~------------~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (424)
+.|.+ +.+|+....+ ++ ..|+||++++|+++.|..|++|+..+|+.+.
T Consensus 343 sDd~t-lflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~la------------------ 403 (480)
T KOG0271|consen 343 SDDFT-LFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLA------------------ 403 (480)
T ss_pred cCCce-EEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhh------------------
Confidence 99999 9999986544 22 1489999999999999999999999998653
Q ss_pred ceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCCcceee-----eeehhhheecCCCceeeEE
Q psy3710 355 WSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWR-----DVYIQFLEMTNDSNLLSCI 420 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~~~-----~~~~~~~~~~~d~~~l~~~ 420 (424)
.|+.|-++|..++|+.|.+.|++|+.|.++++|++. ..++.. ....-..+++|||+..+.+
T Consensus 404 ----sfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~-tkKl~~DLpGh~DEVf~vDwspDG~rV~sg 469 (480)
T KOG0271|consen 404 ----SFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVR-TKKLKQDLPGHADEVFAVDWSPDGQRVASG 469 (480)
T ss_pred ----hhhhccceeEEEEeccCccEEEEcCCCceEEEEEee-eeeecccCCCCCceEEEEEecCCCceeecC
Confidence 367778889999999999999999999999999997 433333 3334567899999998876
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=301.64 Aligned_cols=380 Identities=16% Similarity=0.204 Sum_probs=301.9
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCccccc--ccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeE
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKER--QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 82 (424)
..+|...++-..|||.|.|+|+|...| |||||....+.+.. .+.-.++|..++|.+++.+++.++.+. ++-.
T Consensus 55 YtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGr-----erfg 129 (603)
T KOG0318|consen 55 YTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGR-----ERFG 129 (603)
T ss_pred eccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCc-----ccee
Confidence 468999999999999999999999999 99999866444333 333589999999999999999999874 4444
Q ss_pred EEEECCCCcEEEEEe-ecCCeEEEEecCCc-eEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEE
Q psy3710 83 MIWDDLKKQVVICLE-FNAPVKGVRLRRDK-IVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLA 157 (424)
Q Consensus 83 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (424)
+++-.++|..+-++. |...|+++.|.|.. ..+++ |+.|.+|.-. ..+...++..|. ..+.++.++|||.+++
T Consensus 130 ~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGP-PFKFk~s~r~Hs--kFV~~VRysPDG~~Fa 206 (603)
T KOG0318|consen 130 HVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGP-PFKFKSSFREHS--KFVNCVRYSPDGSRFA 206 (603)
T ss_pred EEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCC-Ceeeeecccccc--cceeeEEECCCCCeEE
Confidence 444444888888888 89999999999887 33333 8999999853 445555566665 4688999999999999
Q ss_pred EeeccCCeEEEEeCCCCCCCCcccc---cccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEeccee-----
Q psy3710 158 FPGRKSGHVHLVDLADPERPPLDIA---AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLC----- 229 (424)
Q Consensus 158 ~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~----- 229 (424)
+ .+.||.+.+||-.++ ..+..+. +|++.|.+++|+||+..+++++.|.+ ++|||+.+.++++++..+..
T Consensus 207 t-~gsDgki~iyDGktg-e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt-~KIWdVs~~slv~t~~~~~~v~dqq 283 (603)
T KOG0318|consen 207 T-AGSDGKIYIYDGKTG-EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT-IKIWDVSTNSLVSTWPMGSTVEDQQ 283 (603)
T ss_pred E-ecCCccEEEEcCCCc-cEEEEecCCCCccccEEEEEECCCCceEEEecCCce-EEEEEeeccceEEEeecCCchhceE
Confidence 8 999999999999987 5666666 89999999999999999999999999 99999999999999875522
Q ss_pred eeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceee---
Q psy3710 230 VLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN--- 306 (424)
Q Consensus 230 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~--- 306 (424)
.-|+.+ + ..+++-+.+|.|.+++...+. +...+.+|...|++++.+||+++|++|+.||. |.-|+..+|..-.
T Consensus 284 vG~lWq-k-d~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~-I~~W~~~~g~~~~~~g 359 (603)
T KOG0318|consen 284 VGCLWQ-K-DHLITVSLSGTINYLNPSDPS-VLKVISGHNKSITALTVSPDGKTIYSGSYDGH-INSWDSGSGTSDRLAG 359 (603)
T ss_pred EEEEEe-C-CeEEEEEcCcEEEEecccCCC-hhheecccccceeEEEEcCCCCEEEeeccCce-EEEEecCCcccccccc
Confidence 224444 3 334457899999999999988 78888999999999999999999999999999 9999998765431
Q ss_pred --------eec---------------------------------------------------------------------
Q psy3710 307 --------ELR--------------------------------------------------------------------- 309 (424)
Q Consensus 307 --------~~~--------------------------------------------------------------------- 309 (424)
.+.
T Consensus 360 ~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~ 439 (603)
T KOG0318|consen 360 KGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSS 439 (603)
T ss_pred ccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCccee
Confidence 111
Q ss_pred -------------cCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCC
Q psy3710 310 -------------RDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADS 376 (424)
Q Consensus 310 -------------~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 376 (424)
|++..++.|+.|+.|+||.+..++... ......|.++++.+++|||+
T Consensus 440 ~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e--------------------e~~~~~h~a~iT~vaySpd~ 499 (603)
T KOG0318|consen 440 IPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE--------------------EAKLLEHRAAITDVAYSPDG 499 (603)
T ss_pred eccccccceEEEcCCCCEEEEecccceEEEEEecCCcccc--------------------eeeeecccCCceEEEECCCC
Confidence 345555555555555555555533211 12244577899999999999
Q ss_pred CeEEEEeccCcEEEEEecCCcceee------eeehhhheecCCCceeeEEE
Q psy3710 377 NSIIVICADGSYYKFMFNSKGECWR------DVYIQFLEMTNDSNLLSCIE 421 (424)
Q Consensus 377 ~~l~~~~~dg~v~~~~~~~~~~~~~------~~~~~~~~~~~d~~~l~~~~ 421 (424)
.||+++...+.+.+|++. ..+... +..+..+.++|+.+++|++.
T Consensus 500 ~yla~~Da~rkvv~yd~~-s~~~~~~~w~FHtakI~~~aWsP~n~~vATGS 549 (603)
T KOG0318|consen 500 AYLAAGDASRKVVLYDVA-SREVKTNRWAFHTAKINCVAWSPNNKLVATGS 549 (603)
T ss_pred cEEEEeccCCcEEEEEcc-cCceecceeeeeeeeEEEEEeCCCceEEEecc
Confidence 999999999999999998 444322 44456889999999999985
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=300.58 Aligned_cols=278 Identities=17% Similarity=0.203 Sum_probs=256.0
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEecc--CceEEEEeCCcCCCcCCCeE
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFR--CNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~~~~~d~~i 82 (424)
..|-+.+|..+.||+|++.||+|+-+| +++|+......+.....|.+.+.++.|.|. +..+++++ .||++
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s-------~Dgtv 243 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATAS-------ADGTV 243 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeec-------cCCce
Confidence 346788999999999999999999999 999999999888888889999999999998 45677777 69999
Q ss_pred EEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEE
Q psy3710 83 MIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAF 158 (424)
Q Consensus 83 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (424)
++|++.+...+..+. |...|..++|+|+|.++++ |.+-++||+. +...+...++|. .++.+++|.+||.++++
T Consensus 244 klw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~-tk~ElL~QEGHs--~~v~~iaf~~DGSL~~t 320 (459)
T KOG0272|consen 244 KLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLE-TKSELLLQEGHS--KGVFSIAFQPDGSLAAT 320 (459)
T ss_pred eeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccc-cchhhHhhcccc--cccceeEecCCCceeec
Confidence 999999989999998 8999999999999999987 9999999997 777777778887 44888999999999988
Q ss_pred eeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecC
Q psy3710 159 PGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNS 235 (424)
Q Consensus 159 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~ 235 (424)
|+.|..-+|||++++ ..+..+.+|..+|.+++|+|+|..|++|+.|++ ++|||++..+.+.+++.| +..+++.|
T Consensus 321 -GGlD~~~RvWDlRtg-r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p 397 (459)
T KOG0272|consen 321 -GGLDSLGRVWDLRTG-RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRMRSELYTIPAHSNLVSQVKYSP 397 (459)
T ss_pred -cCccchhheeecccC-cEEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeecccccceecccccchhhheEecc
Confidence 999999999999998 888899999999999999999999999999999 999999999999999988 56789999
Q ss_pred CCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEE
Q psy3710 236 NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298 (424)
Q Consensus 236 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd 298 (424)
..+.++++++.|++++||..++.. +.+.+.+|.+.|.++.++||+.++++++.|.+ +++|.
T Consensus 398 ~~g~fL~TasyD~t~kiWs~~~~~-~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT-~KLW~ 458 (459)
T KOG0272|consen 398 QEGYFLVTASYDNTVKIWSTRTWS-PLKSLAGHEGKVISLDISPDSQAIATSSFDRT-IKLWR 458 (459)
T ss_pred cCCeEEEEcccCcceeeecCCCcc-cchhhcCCccceEEEEeccCCceEEEeccCce-eeecc
Confidence 999999999999999999999876 57788899999999999999999999999999 99995
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=302.89 Aligned_cols=382 Identities=15% Similarity=0.201 Sum_probs=292.5
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcc--cccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCe
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKE--KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNR 81 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 81 (424)
+..+|-+.|.++.|+.|.++|++|+.|. +++|.++..+. ......|...|...-|..+...+.+++ .||.
T Consensus 140 ~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvs-------kdG~ 212 (893)
T KOG0291|consen 140 TYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVS-------KDGA 212 (893)
T ss_pred eecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEe-------cCce
Confidence 3678999999999999999999999999 99999988877 444566899998888999999999999 6899
Q ss_pred EEEEECCC-----------------------CcE-----EE-EE-e--e---cCCeEEEEecCCceEEEe---e------
Q psy3710 82 VMIWDDLK-----------------------KQV-----VI-CL-E--F---NAPVKGVRLRRDKIVVVL---E------ 117 (424)
Q Consensus 82 i~iwd~~~-----------------------~~~-----~~-~~-~--~---~~~v~~~~~~~~~~~~~~---~------ 117 (424)
+.+|.... ++. .. .. + . +..|++.+|++...++++ .
T Consensus 213 l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Ly 292 (893)
T KOG0291|consen 213 LFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLY 292 (893)
T ss_pred EEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEE
Confidence 99997650 111 00 00 0 1 134555555544333332 2
Q ss_pred -------------------------------------ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEee
Q psy3710 118 -------------------------------------GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPG 160 (424)
Q Consensus 118 -------------------------------------~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (424)
|.+-||++. ....+...++|. ..+.+++++|||+++++ |
T Consensus 293 elP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq-sEsYVlKQQgH~--~~i~~l~YSpDgq~iaT-G 368 (893)
T KOG0291|consen 293 ELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ-SESYVLKQQGHS--DRITSLAYSPDGQLIAT-G 368 (893)
T ss_pred ecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEee-ccceeeeccccc--cceeeEEECCCCcEEEe-c
Confidence 345555553 333333344444 45889999999999998 9
Q ss_pred ccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc----eeeeeecCC
Q psy3710 161 RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG----LCVLCPNSN 236 (424)
Q Consensus 161 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~ 236 (424)
++||.|++||...+ -+..++..|+..|+.+.|+..|+.+++++-||+ |+.||+...+..+++..+ ..+++..|.
T Consensus 369 ~eDgKVKvWn~~Sg-fC~vTFteHts~Vt~v~f~~~g~~llssSLDGt-VRAwDlkRYrNfRTft~P~p~QfscvavD~s 446 (893)
T KOG0291|consen 369 AEDGKVKVWNTQSG-FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGT-VRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS 446 (893)
T ss_pred cCCCcEEEEeccCc-eEEEEeccCCCceEEEEEEecCCEEEEeecCCe-EEeeeecccceeeeecCCCceeeeEEEEcCC
Confidence 99999999999987 788999999999999999999999999999999 999999999999988765 567788888
Q ss_pred CCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCc----ee-------
Q psy3710 237 NSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ----KL------- 305 (424)
Q Consensus 237 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~----~~------- 305 (424)
|..+++.+-+.=.|++|++++++ ....+.+|++||.+++|+|++..|+++|.|.+ ||+||+-... .+
T Consensus 447 GelV~AG~~d~F~IfvWS~qTGq-llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT-VRiW~if~s~~~vEtl~i~sdvl 524 (893)
T KOG0291|consen 447 GELVCAGAQDSFEIFVWSVQTGQ-LLDILSGHEGPVSGLSFSPDGSLLASGSWDKT-VRIWDIFSSSGTVETLEIRSDVL 524 (893)
T ss_pred CCEEEeeccceEEEEEEEeecCe-eeehhcCCCCcceeeEEccccCeEEeccccce-EEEEEeeccCceeeeEeecccee
Confidence 98888744444579999999987 46778899999999999999999999999999 9999986541 11
Q ss_pred -eeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEec
Q psy3710 306 -NELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICA 384 (424)
Q Consensus 306 -~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 384 (424)
.+|+|+|+.|++++.||.|.+||.+.+.....+....... +.......-.+.-...+...+.+++|+||++++.|+.
T Consensus 525 ~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~--~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~ 602 (893)
T KOG0291|consen 525 AVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLS--GGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE 602 (893)
T ss_pred EEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcc--ccccccceeehhhcccCCceEEEEEcCCCCEEEecCC
Confidence 2478999999999999999999999877664433322111 0000000011111223457889999999999999999
Q ss_pred cCcEEEEEecCCcceeeeee
Q psy3710 385 DGSYYKFMFNSKGECWRDVY 404 (424)
Q Consensus 385 dg~v~~~~~~~~~~~~~~~~ 404 (424)
...|.+|++. ++-+++.++
T Consensus 603 sn~iCiY~v~-~~vllkkfq 621 (893)
T KOG0291|consen 603 SNSICIYDVP-EGVLLKKFQ 621 (893)
T ss_pred cccEEEEECc-hhheeeeEE
Confidence 9999999997 555555443
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=285.84 Aligned_cols=353 Identities=17% Similarity=0.227 Sum_probs=287.4
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCccccccc---ccCCCeeeEEEeccCceEEEEeCCcCCCcCCC
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQD---FTDGGLGHVEMLFRCNYLALVGGGTHPKYPNN 80 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~ 80 (424)
+...|..-|+|+.|+|||+++|+.+.|+ +.|||-.+++.+...+ .|.+.|.+++|+||+..+++++ .|.
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S-------aDk 257 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS-------ADK 257 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec-------CCc
Confidence 4678999999999999999999888777 9999999998866655 7999999999999999999999 689
Q ss_pred eEEEEECCCCcEEEEEeecC----CeEEEEecCCceEEEe-eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCe
Q psy3710 81 RVMIWDDLKKQVVICLEFNA----PVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSL 155 (424)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (424)
+++|||+.+.++++++.... ....+-|..+.++.++ +|.|..++.. ....++.+.+|... +.++..++++++
T Consensus 258 t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~-d~~~~~~i~GHnK~--ITaLtv~~d~~~ 334 (603)
T KOG0318|consen 258 TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPS-DPSVLKVISGHNKS--ITALTVSPDGKT 334 (603)
T ss_pred eEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEeccc-CCChhheecccccc--eeEEEEcCCCCE
Confidence 99999999999999998543 3445566666665555 9999999997 66688999999855 889999999999
Q ss_pred EEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceee-------------
Q psy3710 156 LAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN------------- 222 (424)
Q Consensus 156 l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~------------- 222 (424)
|++ |+.||.|.-|+..++......-+.|...|.+++-+..+ .+++++.|.+ +++.++..+....
T Consensus 335 i~S-gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~-~~~t~g~Dd~-l~~~~~~~~~~t~~~~~~lg~QP~~l 411 (603)
T KOG0318|consen 335 IYS-GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG-ELFTIGWDDT-LRVISLKDNGYTKSEVVKLGSQPKGL 411 (603)
T ss_pred EEe-eccCceEEEEecCCccccccccccccceEEEEeecCCC-cEEEEecCCe-EEEEecccCcccccceeecCCCceeE
Confidence 998 99999999999998744444447899999999987654 5677788888 9999774321000
Q ss_pred ------------------EEe-----------cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCC-CCCeeeccCCCCe
Q psy3710 223 ------------------ELR-----------RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE-RPPLDIAAHEAPL 272 (424)
Q Consensus 223 ------------------~~~-----------~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v 272 (424)
.++ -...+++++|++..+++ |+.|+.+++|.+.... ........|.++|
T Consensus 412 av~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaV-GG~Dgkvhvysl~g~~l~ee~~~~~h~a~i 490 (603)
T KOG0318|consen 412 AVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAV-GGQDGKVHVYSLSGDELKEEAKLLEHRAAI 490 (603)
T ss_pred EEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEE-ecccceEEEEEecCCcccceeeeecccCCc
Confidence 000 01345688888888887 9999999999998865 3334566899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEECCCCceee-------------eeccCCcEEEEEeCCCcEEEEEccccccccccc
Q psy3710 273 SCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN-------------ELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQS 339 (424)
Q Consensus 273 ~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~-------------~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 339 (424)
++++||||+.+||++...+. +.+||+.+.+... .|+|++.++|+|+-|..|.||+++......
T Consensus 491 T~vaySpd~~yla~~Da~rk-vv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i--- 566 (603)
T KOG0318|consen 491 TDVAYSPDGAYLAAGDASRK-VVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHI--- 566 (603)
T ss_pred eEEEECCCCcEEEEeccCCc-EEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhhe---
Confidence 99999999999999999999 9999999876532 368999999999999999999998743321
Q ss_pred cceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 340 SLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
.....|...++.++|-.+ ..|++.+.|..|++|++.
T Consensus 567 ------------------~iknAH~~gVn~v~wlde-~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 567 ------------------IIKNAHLGGVNSVAWLDE-STVVSSGQDANIKVWNVT 602 (603)
T ss_pred ------------------EeccccccCceeEEEecC-ceEEeccCcceeEEeccc
Confidence 112245556888999655 578999999999999974
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-44 Score=290.49 Aligned_cols=266 Identities=17% Similarity=0.185 Sum_probs=241.2
Q ss_pred cCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCC--ceEEEe---eccEEEE
Q psy3710 50 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRD--KIVVVL---EGLIKVY 123 (424)
Q Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~--~~~~~~---~~~i~v~ 123 (424)
...++..+.|+.+++.+++++ .+|.+++|+..+...+.++. |...+.++.|+|. +..+++ ||++++|
T Consensus 174 d~rPis~~~fS~ds~~laT~s-------wsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGS-------WSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred CCCcceeeEeecCCCeEEEee-------cCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeee
Confidence 567899999999999999999 67999999999999999998 9999999999997 445554 9999999
Q ss_pred eecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEE
Q psy3710 124 TFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATA 203 (424)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 203 (424)
++. +..++..+.+|. ..+..++|+|+|++|++ ++.|.+-++||+.++ ..+....+|...|.+++|.|||..+++|
T Consensus 247 ~~~-~e~~l~~l~gH~--~RVs~VafHPsG~~L~T-asfD~tWRlWD~~tk-~ElL~QEGHs~~v~~iaf~~DGSL~~tG 321 (459)
T KOG0272|consen 247 KLS-QETPLQDLEGHL--ARVSRVAFHPSGKFLGT-ASFDSTWRLWDLETK-SELLLQEGHSKGVFSIAFQPDGSLAATG 321 (459)
T ss_pred ccC-CCcchhhhhcch--hhheeeeecCCCceeee-cccccchhhcccccc-hhhHhhcccccccceeEecCCCceeecc
Confidence 997 668888999988 44888999999999998 999999999999997 7778889999999999999999999999
Q ss_pred ecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCE
Q psy3710 204 SYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTR 283 (424)
Q Consensus 204 ~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 283 (424)
+.|.. -+|||+++++++..+. +|..+|.+++|+|+|..
T Consensus 322 GlD~~-~RvWDlRtgr~im~L~-----------------------------------------gH~k~I~~V~fsPNGy~ 359 (459)
T KOG0272|consen 322 GLDSL-GRVWDLRTGRCIMFLA-----------------------------------------GHIKEILSVAFSPNGYH 359 (459)
T ss_pred Cccch-hheeecccCcEEEEec-----------------------------------------ccccceeeEeECCCceE
Confidence 99999 9999999998876554 89999999999999999
Q ss_pred EEEEeCCCcEEEEEECCCCceeee------------ecc-CCcEEEEEeCCCcEEEEEccccccccccccceeeeccCcc
Q psy3710 284 LATASYKGTLIRVFDTGSGQKLNE------------LRR-DSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKY 350 (424)
Q Consensus 284 l~~~~~d~~~i~iwd~~~~~~~~~------------~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 350 (424)
|||||.|++ ++|||++..+++.+ |+| .|.+|++++.|++++||...+.+++..+.
T Consensus 360 lATgs~Dnt-~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa----------- 427 (459)
T KOG0272|consen 360 LATGSSDNT-CKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA----------- 427 (459)
T ss_pred EeecCCCCc-EEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc-----------
Confidence 999999999 99999998887765 455 78999999999999999999988876543
Q ss_pred ccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEE
Q psy3710 351 FSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFM 392 (424)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~ 392 (424)
+|.+.|.++.+++|+.++++++.|.++++|.
T Consensus 428 -----------GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 428 -----------GHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred -----------CCccceEEEEeccCCceEEEeccCceeeecc
Confidence 4677889999999999999999999999995
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-43 Score=303.50 Aligned_cols=378 Identities=15% Similarity=0.212 Sum_probs=295.4
Q ss_pred cCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEEC
Q psy3710 9 YKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDD 87 (424)
Q Consensus 9 h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~ 87 (424)
|+.||..++|+|.|..||+|+.++ +++||+..+.+......|.|.|..+.|.|+.++.++++++ .|+++++||+
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~-----~D~~v~vwnl 178 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGA-----TDGTVRVWNL 178 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecC-----CCceEEEEEc
Confidence 999999999999999999999999 9999999999988889999999999999999887777776 5999999999
Q ss_pred CCCcE-EEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeE-----------------
Q psy3710 88 LKKQV-VICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLC----------------- 145 (424)
Q Consensus 88 ~~~~~-~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~----------------- 145 (424)
.++.. +..+. |.+.|+++++++|+..+.+ |..+.+||+. ..+...+++....-.++.
T Consensus 179 ~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~-~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG 257 (775)
T KOG0319|consen 179 NDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLV-QYKKLKTLPLYESLESVVRLREELGGKGEYIITAG 257 (775)
T ss_pred ccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehh-hhhhhheechhhheeeEEEechhcCCcceEEEEec
Confidence 86655 55555 8999999999999866655 8899999985 433333322221111110
Q ss_pred ----------------------------------------------------------------------EEe-ecCCCC
Q psy3710 146 ----------------------------------------------------------------------VLC-PNSNNS 154 (424)
Q Consensus 146 ----------------------------------------------------------------------~~~-~~~~~~ 154 (424)
.++ +.|+.+
T Consensus 258 ~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~ 337 (775)
T KOG0319|consen 258 GSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEES 337 (775)
T ss_pred CCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccc
Confidence 011 123334
Q ss_pred eEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcc----eeeEEecc---
Q psy3710 155 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ----KLNELRRG--- 227 (424)
Q Consensus 155 ~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~----~~~~~~~~--- 227 (424)
++++ ++..+.+++|+..+. .-..+.+|...|.+++...+|.+|++|+.|.+ +++|.++++. ++....++
T Consensus 338 ~laV-ATNs~~lr~y~~~~~--~c~ii~GH~e~vlSL~~~~~g~llat~sKD~s-vilWr~~~~~~~~~~~a~~~gH~~s 413 (775)
T KOG0319|consen 338 HLAV-ATNSPELRLYTLPTS--YCQIIPGHTEAVLSLDVWSSGDLLATGSKDKS-VILWRLNNNCSKSLCVAQANGHTNS 413 (775)
T ss_pred eEEE-EeCCCceEEEecCCC--ceEEEeCchhheeeeeecccCcEEEEecCCce-EEEEEecCCcchhhhhhhhcccccc
Confidence 4444 555555555555442 22366789999999996667889999999999 9999885442 22233333
Q ss_pred eeeeeecCCCCeEEEEeecCCeEEEEeCCCCC--CCC------eeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEC
Q psy3710 228 LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE--RPP------LDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDT 299 (424)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~--~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~ 299 (424)
+..++++..+..++++++.|+++++|++...+ ... .....|...|++++++|+.+++||||.|.+ .+||++
T Consensus 414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt-aKiW~l 492 (775)
T KOG0319|consen 414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT-AKIWDL 492 (775)
T ss_pred cceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc-eeeecc
Confidence 67788888899999999999999999998732 111 133589999999999999999999999999 999999
Q ss_pred CCCceeee------------eccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCc
Q psy3710 300 GSGQKLNE------------LRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPP 367 (424)
Q Consensus 300 ~~~~~~~~------------~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (424)
+....+.+ |++..+.++++|.|++|+||.+.+..++.+ +.+|...|
T Consensus 493 e~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT----------------------~eGH~~aV 550 (775)
T KOG0319|consen 493 EQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKT----------------------FEGHTSAV 550 (775)
T ss_pred cCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeee----------------------ecCcccee
Confidence 98877765 457788999999999999999999998765 45566778
Q ss_pred eEEEEecCCCeEEEEeccCcEEEEEecCCcceee-----eeehhhheecCCCceeeEE
Q psy3710 368 CICAFGADSNSIIVICADGSYYKFMFNSKGECWR-----DVYIQFLEMTNDSNLLSCI 420 (424)
Q Consensus 368 ~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~~~-----~~~~~~~~~~~d~~~l~~~ 420 (424)
..+.|-.+|++|+++++||.+++|++. +++|.. +.....+..+|.++.++++
T Consensus 551 lra~F~~~~~qliS~~adGliKlWnik-t~eC~~tlD~H~DrvWaL~~~~~~~~~~tg 607 (775)
T KOG0319|consen 551 LRASFIRNGKQLISAGADGLIKLWNIK-TNECEMTLDAHNDRVWALSVSPLLDMFVTG 607 (775)
T ss_pred EeeeeeeCCcEEEeccCCCcEEEEecc-chhhhhhhhhccceeEEEeecCccceeEec
Confidence 889999999999999999999999998 888877 3334567778888877755
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=262.79 Aligned_cols=278 Identities=18% Similarity=0.243 Sum_probs=249.6
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEE
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVM 83 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~ 83 (424)
+|+||.+.|.++.|++|.++|++++.|| +.|||.-+..+......+..-|..++++|+++++|..+ -|+...
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGG-------LdN~Cs 122 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGG-------LDNKCS 122 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecC-------cCceeE
Confidence 4999999999999999999999999999 99999988887777777888999999999999998877 689999
Q ss_pred EEECCCC------cEEEEEe-ecCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecC-CC
Q psy3710 84 IWDDLKK------QVVICLE-FNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNS-NN 153 (424)
Q Consensus 84 iwd~~~~------~~~~~~~-~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 153 (424)
||++.+. +..+++. |.+-+.++.|-+|+.++.. |.+..+||++ +++.+..+.+|... +.+++++| ++
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie-~g~~~~~f~GH~gD--V~slsl~p~~~ 199 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIE-TGQQTQVFHGHTGD--VMSLSLSPSDG 199 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcc-cceEEEEecCCccc--EEEEecCCCCC
Confidence 9999855 3344555 8999999999999888776 8899999997 89999999998855 88888888 88
Q ss_pred CeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEec-----ce
Q psy3710 154 SLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR-----GL 228 (424)
Q Consensus 154 ~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-----~~ 228 (424)
+.+++ |+-|+..++||++.+ ...+.|.+|...|+++.|.|+|.-+++|+.|++ .++||++..+.+..+.. ++
T Consensus 200 ntFvS-g~cD~~aklWD~R~~-~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 200 NTFVS-GGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred CeEEe-cccccceeeeeccCc-ceeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCCcEEeeeccCcccCCc
Confidence 88887 999999999999998 889999999999999999999999999999999 99999999988887764 47
Q ss_pred eeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEE
Q psy3710 229 CVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298 (424)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd 298 (424)
..++|+..|+.+++ |..|.++.+||.-.++. ...+.+|++.|+++..+|||.-+++||.|.. +|||.
T Consensus 277 tSv~FS~SGRlLfa-gy~d~~c~vWDtlk~e~-vg~L~GHeNRvScl~~s~DG~av~TgSWDs~-lriW~ 343 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFA-GYDDFTCNVWDTLKGER-VGVLAGHENRVSCLGVSPDGMAVATGSWDST-LRIWA 343 (343)
T ss_pred eeEEEcccccEEEe-eecCCceeEeeccccce-EEEeeccCCeeEEEEECCCCcEEEecchhHh-eeecC
Confidence 88999999988877 89999999999988763 5567799999999999999999999999999 99994
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=284.54 Aligned_cols=378 Identities=15% Similarity=0.188 Sum_probs=308.7
Q ss_pred cCCceEEEEECCCCCeeEeecCCeEEEEeCCcCcc--------cccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCC
Q psy3710 9 YKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKE--------KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNN 80 (424)
Q Consensus 9 h~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~ 80 (424)
...+|.|+.|||+|+++|+|..+-+.||....... ...+..|...+.++.|+.|.+++++.+ .|-
T Consensus 95 fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gs-------rD~ 167 (893)
T KOG0291|consen 95 FKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGS-------RDL 167 (893)
T ss_pred ecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEecc-------ccc
Confidence 36789999999999999999998899998643222 222344778999999999999998888 689
Q ss_pred eEEEEECCCCcEEEEE--e-ecCCeEEEEecCCceEEEe---eccEEEEeecCC----------------------Cce-
Q psy3710 81 RVMIWDDLKKQVVICL--E-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQC----------------------PQQ- 131 (424)
Q Consensus 81 ~i~iwd~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~----------------------~~~- 131 (424)
+.++|+++..+..... . |...|.+.-|..+..-+.+ ||.+.+|..... ++.
T Consensus 168 s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek 247 (893)
T KOG0291|consen 168 SARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEK 247 (893)
T ss_pred eEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhh
Confidence 9999999876664433 3 8899999999887754443 999999987510 000
Q ss_pred --------eEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEE
Q psy3710 132 --------LHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATA 203 (424)
Q Consensus 132 --------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 203 (424)
....-....+..+.+.++++.-..|++ |-..|...+|.+... ..++.+.-...+|..++|+..|.+|+.|
T Consensus 248 ~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvv-gFssG~f~LyelP~f-~lih~LSis~~~I~t~~~N~tGDWiA~g 325 (893)
T KOG0291|consen 248 THKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVV-GFSSGEFGLYELPDF-NLIHSLSISDQKILTVSFNSTGDWIAFG 325 (893)
T ss_pred hcceEEEEEEeeeecccccceeeeeccCCceEEEE-EecCCeeEEEecCCc-eEEEEeecccceeeEEEecccCCEEEEc
Confidence 001111223356888899998888888 999999999999985 7778887778899999999999999998
Q ss_pred ecC-CcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcC
Q psy3710 204 SYK-GTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ 279 (424)
Q Consensus 204 ~~d-~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 279 (424)
+.. |. +-+|+..+...+...++| +.+++++|+|+.++. |++||.|++||..++-+ ..++..|.+.|+.+.|+.
T Consensus 326 ~~klgQ-LlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaT-G~eDgKVKvWn~~SgfC-~vTFteHts~Vt~v~f~~ 402 (893)
T KOG0291|consen 326 CSKLGQ-LLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIAT-GAEDGKVKVWNTQSGFC-FVTFTEHTSGVTAVQFTA 402 (893)
T ss_pred CCccce-EEEEEeeccceeeeccccccceeeEEECCCCcEEEe-ccCCCcEEEEeccCceE-EEEeccCCCceEEEEEEe
Confidence 876 56 999999999888888766 778899999988776 99999999999998774 567889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEECCCCceeeeec-------------cCCcEEEEEeCCC-cEEEEEccccccccccccceeee
Q psy3710 280 TGTRLATASYKGTLIRVFDTGSGQKLNELR-------------RDSSYLCVSSDHG-TVHVFSVDEAQKINKQSSLASAS 345 (424)
Q Consensus 280 ~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-------------~~~~~l~~~~~d~-~i~iw~~~~~~~~~~~~~~~~~~ 345 (424)
.|+.++++|-||+ ||.||+...+..++|. |.|.++++|+.|. .|++|++++|+.+..++
T Consensus 403 ~g~~llssSLDGt-VRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs------ 475 (893)
T KOG0291|consen 403 RGNVLLSSSLDGT-VRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS------ 475 (893)
T ss_pred cCCEEEEeecCCe-EEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc------
Confidence 9999999999999 9999999988888764 5688999998875 69999999999876543
Q ss_pred ccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCCcceeeeeeh----hhheecCCCceeeEEE
Q psy3710 346 FLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWRDVYI----QFLEMTNDSNLLSCIE 421 (424)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~ 421 (424)
+|.+||..++|+|++..|++++-|.+|++|++-.....+.+... ..+.+.|||+-++.+-
T Consensus 476 ----------------GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaT 539 (893)
T KOG0291|consen 476 ----------------GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVAT 539 (893)
T ss_pred ----------------CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEE
Confidence 57789999999999999999999999999999865333333332 3466899999999874
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=255.16 Aligned_cols=292 Identities=13% Similarity=0.143 Sum_probs=243.4
Q ss_pred ccccccCCceEEEEECCCC-CeeEeecCCe-EEEEeCCcC-----cccccccccCCCeeeEEEeccCceEEEEeCCcCCC
Q psy3710 4 GTSSTYKNGLLYAGFNQDQ-GCFACGMEDG-FRIYNCDPL-----KEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPK 76 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~g-~~la~g~~~~-i~iw~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 76 (424)
.+|.+|++.|+.++..+.+ +.+.+++.|. +.+|++... ..+.++..|...|..+..++++++.++++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s------ 82 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS------ 82 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc------
Confidence 4689999999999999885 5666888888 999997653 33556777999999999999999999998
Q ss_pred cCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCC
Q psy3710 77 YPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSN 152 (424)
Q Consensus 77 ~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (424)
.|+++++||+.+++..+.+. |...|.+++|++|...+++ |.+|++|+.. +.+..++....+...+.++.|+|+
T Consensus 83 -wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~--g~ck~t~~~~~~~~WVscvrfsP~ 159 (315)
T KOG0279|consen 83 -WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL--GVCKYTIHEDSHREWVSCVRFSPN 159 (315)
T ss_pred -ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec--ccEEEEEecCCCcCcEEEEEEcCC
Confidence 79999999999999988888 8999999999999987776 9999999984 555555555543566889999988
Q ss_pred --CCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceee
Q psy3710 153 --NSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCV 230 (424)
Q Consensus 153 --~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~ 230 (424)
...|+. ++.|++|++||+++. +....+.+|++.++.++++|||..+++|+.||. +.+||++.++.+..+
T Consensus 160 ~~~p~Ivs-~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~~k~lysl------ 230 (315)
T KOG0279|consen 160 ESNPIIVS-ASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNEGKNLYSL------ 230 (315)
T ss_pred CCCcEEEE-ccCCceEEEEccCCc-chhhccccccccEEEEEECCCCCEEecCCCCce-EEEEEccCCceeEec------
Confidence 566666 999999999999986 777889999999999999999999999999999 999999988876554
Q ss_pred eeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeecc
Q psy3710 231 LCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR 310 (424)
Q Consensus 231 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~ 310 (424)
+|...|.+++|+|+...|+.+...+ |+|||+.++.++.++++
T Consensus 231 ------------------------------------~a~~~v~sl~fspnrywL~~at~~s--IkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 231 ------------------------------------EAFDIVNSLCFSPNRYWLCAATATS--IKIWDLESKAVVEELKL 272 (315)
T ss_pred ------------------------------------cCCCeEeeEEecCCceeEeeccCCc--eEEEeccchhhhhhccc
Confidence 5778999999999976666665554 99999999999888887
Q ss_pred CCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEE
Q psy3710 311 DSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYK 390 (424)
Q Consensus 311 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~ 390 (424)
++.-- ....+. .....++|++||..|+.|..|+.|++
T Consensus 273 d~~g~------------s~~~~~-------------------------------~~clslaws~dG~tLf~g~td~~irv 309 (315)
T KOG0279|consen 273 DGIGP------------SSKAGD-------------------------------PICLSLAWSADGQTLFAGYTDNVIRV 309 (315)
T ss_pred ccccc------------ccccCC-------------------------------cEEEEEEEcCCCcEEEeeecCCcEEE
Confidence 64311 111111 12357899999999999999999999
Q ss_pred EEec
Q psy3710 391 FMFN 394 (424)
Q Consensus 391 ~~~~ 394 (424)
|.+.
T Consensus 310 ~qv~ 313 (315)
T KOG0279|consen 310 WQVA 313 (315)
T ss_pred EEee
Confidence 9985
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=291.26 Aligned_cols=352 Identities=15% Similarity=0.181 Sum_probs=291.2
Q ss_pred ccccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeE
Q psy3710 4 GTSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 82 (424)
.++.||...|+++.|+..|.+||+|+.|+ |.+||+-......+...|...|+..-|..+.+.+++++ .|+.|
T Consensus 101 ~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~s-------KDs~i 173 (888)
T KOG0306|consen 101 ITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVS-------KDSMI 173 (888)
T ss_pred eeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEec-------cCceE
Confidence 35789999999999999999999999999 99999987777888888888888888888778888887 67888
Q ss_pred EEEECCCCcEEEEEe-----------------------------------------------------------------
Q psy3710 83 MIWDDLKKQVVICLE----------------------------------------------------------------- 97 (424)
Q Consensus 83 ~iwd~~~~~~~~~~~----------------------------------------------------------------- 97 (424)
++||+++..+..+.-
T Consensus 174 K~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d 253 (888)
T KOG0306|consen 174 KFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTD 253 (888)
T ss_pred EEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeec
Confidence 888887644431111
Q ss_pred --------------------------------------------------------------------------------
Q psy3710 98 -------------------------------------------------------------------------------- 97 (424)
Q Consensus 98 -------------------------------------------------------------------------------- 97 (424)
T Consensus 254 ~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~ 333 (888)
T KOG0306|consen 254 FSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGG 333 (888)
T ss_pred CcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCC
Confidence
Q ss_pred --------------------------------------ecCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEee
Q psy3710 98 --------------------------------------FNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFET 137 (424)
Q Consensus 98 --------------------------------------~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~ 137 (424)
|...|++++++.+..++++ .+.+++|+.. +.+.++++..
T Consensus 334 ~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~-t~kciRTi~~ 412 (888)
T KOG0306|consen 334 TENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRD-TLKCIRTITC 412 (888)
T ss_pred cceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEcc-CcceeEEecc
Confidence 2334566666667766666 4678888875 6777777665
Q ss_pred CCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCC
Q psy3710 138 NPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS 217 (424)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~ 217 (424)
. .+.+..|-|.++++++ |...|.+.+||+.+. ..+...++|.+.|.+++.+||++.+++||.|.+ |++||..-
T Consensus 413 ~----y~l~~~Fvpgd~~Iv~-G~k~Gel~vfdlaS~-~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt-VkfWdf~l 485 (888)
T KOG0306|consen 413 G----YILASKFVPGDRYIVL-GTKNGELQVFDLASA-SLVETIRAHDGAIWSISLSPDNKGFVTGSADKT-VKFWDFKL 485 (888)
T ss_pred c----cEEEEEecCCCceEEE-eccCCceEEEEeehh-hhhhhhhccccceeeeeecCCCCceEEecCCcE-EEEEeEEE
Confidence 4 3667778888899988 999999999999986 677788899999999999999999999999999 99999742
Q ss_pred -----cc----------eeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCC
Q psy3710 218 -----GQ----------KLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT 282 (424)
Q Consensus 218 -----~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 282 (424)
+. ...+++..+-++.++|++.++++ +--|+++++|-+.+-+ ....+.+|.-||.||..|||++
T Consensus 486 ~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV-sLLdnTVkVyflDtlK-FflsLYGHkLPV~smDIS~DSk 563 (888)
T KOG0306|consen 486 VVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV-SLLDNTVKVYFLDTLK-FFLSLYGHKLPVLSMDISPDSK 563 (888)
T ss_pred EeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE-EeccCeEEEEEeccee-eeeeecccccceeEEeccCCcC
Confidence 11 22334455888999999999988 8899999999999866 3445669999999999999999
Q ss_pred EEEEEeCCCcEEEEEECCCCceeee------------eccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCcc
Q psy3710 283 RLATASYKGTLIRVFDTGSGQKLNE------------LRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKY 350 (424)
Q Consensus 283 ~l~~~~~d~~~i~iwd~~~~~~~~~------------~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 350 (424)
.++|||.|.+ |++|-+.=|.|-++ |-|....+.+++.|+.|+-||-...++++.+.
T Consensus 564 livTgSADKn-VKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~----------- 631 (888)
T KOG0306|consen 564 LIVTGSADKN-VKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD----------- 631 (888)
T ss_pred eEEeccCCCc-eEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-----------
Confidence 9999999999 99999988877654 55788899999999999999998888766543
Q ss_pred ccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecC
Q psy3710 351 FSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~ 395 (424)
.|...+++++.+|+|.++++++.|..|++|....
T Consensus 632 -----------~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 632 -----------GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred -----------cchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 4556788999999999999999999999999764
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=250.07 Aligned_cols=255 Identities=18% Similarity=0.299 Sum_probs=219.8
Q ss_pred CCCeEEEEECCCCcEEEEEee-cCCeEEEEecCCceEEEe--eccEEEEeecCCC-ceeEEEeeCCCCCeeEEEeecCCC
Q psy3710 78 PNNRVMIWDDLKKQVVICLEF-NAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCP-QQLHVFETNPNPKGLCVLCPNSNN 153 (424)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 153 (424)
.|.+|++|...+|.+.++++| .+.|+.+.+.|++..++. ...|++||++... .++.++++|.+. +.++.|..+|
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kN--VtaVgF~~dg 95 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKN--VTAVGFQCDG 95 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCc--eEEEEEeecC
Confidence 599999999999999999997 678999999999988886 6699999997444 378889988754 8888999999
Q ss_pred CeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe----ccee
Q psy3710 154 SLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR----RGLC 229 (424)
Q Consensus 154 ~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~----~~~~ 229 (424)
+++++ |++||+++|||++.. .......|.++|+++..+|+...|+++..+|. |++||+....+..++- ..+.
T Consensus 96 rWMyT-gseDgt~kIWdlR~~--~~qR~~~~~spVn~vvlhpnQteLis~dqsg~-irvWDl~~~~c~~~liPe~~~~i~ 171 (311)
T KOG0315|consen 96 RWMYT-GSEDGTVKIWDLRSL--SCQRNYQHNSPVNTVVLHPNQTELISGDQSGN-IRVWDLGENSCTHELIPEDDTSIQ 171 (311)
T ss_pred eEEEe-cCCCceEEEEeccCc--ccchhccCCCCcceEEecCCcceEEeecCCCc-EEEEEccCCccccccCCCCCccee
Confidence 99998 999999999999984 33444567899999999999999999999999 9999999886665553 3378
Q ss_pred eeeecCCCCeEEEEeecCCeEEEEeCCCCC-----CCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCC-c
Q psy3710 230 VLCPNSNNSLLAFPGRKSGHVHLVDLADPE-----RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG-Q 303 (424)
Q Consensus 230 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~-~ 303 (424)
.+.+.|+|..+++ +...|..++|++.+.. .++..++.|.+-+..+.+|||+++||++|.|.+ ++||+.++. +
T Consensus 172 sl~v~~dgsml~a-~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt-v~iwn~~~~~k 249 (311)
T KOG0315|consen 172 SLTVMPDGSMLAA-ANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT-VKIWNTDDFFK 249 (311)
T ss_pred eEEEcCCCcEEEE-ecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce-EEEEecCCcee
Confidence 8899999998887 8899999999998744 455678899999999999999999999999999 999999876 2
Q ss_pred eee------------eeccCCcEEEEEeCCCcEEEEEcccccccccccc
Q psy3710 304 KLN------------ELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSS 340 (424)
Q Consensus 304 ~~~------------~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 340 (424)
... .|+.||+||++|+.|+.+++|++..++.+....+
T Consensus 250 le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 250 LELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred eEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC
Confidence 211 3788999999999999999999999987665443
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=247.60 Aligned_cols=334 Identities=56% Similarity=0.969 Sum_probs=293.2
Q ss_pred ceEEEEECCCCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCc
Q psy3710 12 GLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ 91 (424)
Q Consensus 12 ~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~ 91 (424)
...+++|++|...+++|.++|.+||++++.++....+++.+.+..+++.+..+++++++|+..|+|+.+.+.|||-...+
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 45569999999999999999999999999988777777777788999999999999999999999999999999988999
Q ss_pred EEEEEeecCCeEEEEecCCceEEEeeccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeC
Q psy3710 92 VVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDL 171 (424)
Q Consensus 92 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~ 171 (424)
++.++.+..+|.++.+.++...++..+.|.||...++.+.++.++...+|.+.++++.+.+..+|+..|-.-|.|+|-|+
T Consensus 87 ~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL 166 (346)
T KOG2111|consen 87 CIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDL 166 (346)
T ss_pred EEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEh
Confidence 99999999999999999999999999999999997788999999999999999999999999999998999999999999
Q ss_pred CCCCC-CCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeE
Q psy3710 172 ADPER-PPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHV 250 (424)
Q Consensus 172 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i 250 (424)
..... +...+.+|.+.|.+++.+-+|..+|++|..|+.|||||..+|+.+.+++.+
T Consensus 167 ~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG----------------------- 223 (346)
T KOG2111|consen 167 ASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG----------------------- 223 (346)
T ss_pred hhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC-----------------------
Confidence 87533 357889999999999999999999999999999999999999999998765
Q ss_pred EEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeeccCCcEEEEEeCCCcEEEEEcc
Q psy3710 251 HLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYLCVSSDHGTVHVFSVD 330 (424)
Q Consensus 251 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~ 330 (424)
.....|.+|+|||+..+||++|..|+ +.|+.++....-.. +.
T Consensus 224 ----------------~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~~~--------------------~~- 265 (346)
T KOG2111|consen 224 ----------------VDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENTED--------------------ES- 265 (346)
T ss_pred ----------------CchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCCcc--------------------cc-
Confidence 34567999999999999999999999 99998875332111 00
Q ss_pred ccccccccccceee-eccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCC--cceeeeeehhh
Q psy3710 331 EAQKINKQSSLASA-SFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSK--GECWRDVYIQF 407 (424)
Q Consensus 331 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~--~~~~~~~~~~~ 407 (424)
+.+... ..+|++.+.+|.++.+.++.++...++|..+.+.++..+.||..+-+.+.+. |++.+..+..+
T Consensus 266 --------SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~~~g~~~~~~~~~~ 337 (346)
T KOG2111|consen 266 --------SSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFDPKNGGESSRHEYSYF 337 (346)
T ss_pred --------ccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccccccchhhhhhhhe
Confidence 111111 3678899999999999999999999999999888888999999998888865 99999988888
Q ss_pred heecCCC
Q psy3710 408 LEMTNDS 414 (424)
Q Consensus 408 ~~~~~d~ 414 (424)
+.+..++
T Consensus 338 ~~~~~~~ 344 (346)
T KOG2111|consen 338 LSLQDDD 344 (346)
T ss_pred eecccCC
Confidence 7766554
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=279.21 Aligned_cols=355 Identities=15% Similarity=0.199 Sum_probs=272.4
Q ss_pred ccccccCCceEEEEECCCCC--eeEeecCCe-EEEEeCCcCcc-cccccccCCCeeeEEEeccCceEEEEeCCcCCCcCC
Q psy3710 4 GTSSTYKNGLLYAGFNQDQG--CFACGMEDG-FRIYNCDPLKE-KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPN 79 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~g~--~la~g~~~~-i~iw~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d 79 (424)
+.+.||.+.|.++.|+|+-. .|++|..|+ +++||+..... ......|...++.+.+.+++.-+++++ .|
T Consensus 141 h~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~-------RD 213 (775)
T KOG0319|consen 141 HSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVG-------RD 213 (775)
T ss_pred EEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEec-------cC
Confidence 45899999999999999864 477888888 99999986555 556677899999999999999999888 58
Q ss_pred CeEEEEECCCCcEEEEEeecCCeEEEEecCC-----ceEEEe---eccEEEEeecC------------------------
Q psy3710 80 NRVMIWDDLKKQVVICLEFNAPVKGVRLRRD-----KIVVVL---EGLIKVYTFIQ------------------------ 127 (424)
Q Consensus 80 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~---~~~i~v~~~~~------------------------ 127 (424)
..+.+||+.+-+..+.+.....+.++.+-++ +.++.+ +|.+++||.+.
T Consensus 214 kvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~ 293 (775)
T KOG0319|consen 214 KVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESM 293 (775)
T ss_pred cEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceecccc
Confidence 9999999876655555543344444444333 222222 34444444321
Q ss_pred ------------------CCce------------------------------------------eEEEeeCCCCCeeEEE
Q psy3710 128 ------------------CPQQ------------------------------------------LHVFETNPNPKGLCVL 147 (424)
Q Consensus 128 ------------------~~~~------------------------------------------~~~~~~~~~~~~~~~~ 147 (424)
+.++ -..+.+|. ..+.++
T Consensus 294 ~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~--e~vlSL 371 (775)
T KOG0319|consen 294 SQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHT--EAVLSL 371 (775)
T ss_pred CceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCch--hheeee
Confidence 0000 01222222 224555
Q ss_pred eecCCCCeEEEeeccCCeEEEEeCCCCC---CCCcccccccCCeEEEEEccCC-CEEEEEecCCcEEEEEECCCccee--
Q psy3710 148 CPNSNNSLLAFPGRKSGHVHLVDLADPE---RPPLDIAAHEAPLSCIALNQTG-TRLATASYKGTLIRVFDTGSGQKL-- 221 (424)
Q Consensus 148 ~~~~~~~~l~~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~~i~iwd~~~~~~~-- 221 (424)
....+|-+|++ |+.|.++++|.++++. .++....+|.+.|.+++++..+ ..|+++|.|++ +++|++...+..
T Consensus 372 ~~~~~g~llat-~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~t-lK~W~l~~s~~~~~ 449 (775)
T KOG0319|consen 372 DVWSSGDLLAT-GSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCT-LKLWDLPKSKETAF 449 (775)
T ss_pred eecccCcEEEE-ecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCce-EEEecCCCcccccc
Confidence 54456767776 9999999999885432 2344677999999999997654 58999999999 999999763211
Q ss_pred -eEE---------ecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCC
Q psy3710 222 -NEL---------RRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKG 291 (424)
Q Consensus 222 -~~~---------~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 291 (424)
..+ ...+++++++|++..++ +|+.|.+.+||+++.. ....++.+|...|.++.|+|..+.+||+|.|+
T Consensus 450 ~~~~~~~~t~~aHdKdIN~Vaia~ndkLiA-T~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~ 527 (775)
T KOG0319|consen 450 PIVLTCRYTERAHDKDINCVAIAPNDKLIA-TGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDK 527 (775)
T ss_pred cceehhhHHHHhhcccccceEecCCCceEE-ecccccceeeecccCc-eEEEEeeCCccceEEEEeccccceeEeccCCc
Confidence 111 12378899999877665 5999999999999943 35678899999999999999999999999999
Q ss_pred cEEEEEECCCCceeeeec------------cCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeE
Q psy3710 292 TLIRVFDTGSGQKLNELR------------RDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCK 359 (424)
Q Consensus 292 ~~i~iwd~~~~~~~~~~~------------~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (424)
+ |+||.+.+..++++|+ .+|+.|++++.||-|++|++++++|+..
T Consensus 528 T-vKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~t---------------------- 584 (775)
T KOG0319|consen 528 T-VKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMT---------------------- 584 (775)
T ss_pred e-EEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhh----------------------
Confidence 9 9999999999999887 3789999999999999999999998765
Q ss_pred EeecCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 360 FQIPSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 360 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
...|+..++.++.+|++..+++|+.||.|.+|.=.
T Consensus 585 lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 585 LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred hhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 34566778889999999999999999999999754
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=243.81 Aligned_cols=260 Identities=20% Similarity=0.272 Sum_probs=218.2
Q ss_pred eEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCC-CCcccccccCC
Q psy3710 112 IVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER-PPLDIAAHEAP 187 (424)
Q Consensus 112 ~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~ 187 (424)
.++++ |.+|++|... ++.+..+++..+. .+..+...|+++.|++ .....|++||+++... ++..+.+|...
T Consensus 11 viLvsA~YDhTIRfWqa~-tG~C~rTiqh~ds--qVNrLeiTpdk~~LAa--a~~qhvRlyD~~S~np~Pv~t~e~h~kN 85 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQAL-TGICSRTIQHPDS--QVNRLEITPDKKDLAA--AGNQHVRLYDLNSNNPNPVATFEGHTKN 85 (311)
T ss_pred eEEEeccCcceeeeeehh-cCeEEEEEecCcc--ceeeEEEcCCcchhhh--ccCCeeEEEEccCCCCCceeEEeccCCc
Confidence 44444 8999999997 8999999987774 4888999999999996 4457899999998754 78899999999
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe--cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeee
Q psy3710 188 LSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR--RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDI 265 (424)
Q Consensus 188 v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~ 265 (424)
|+++.|..+|+.+++|++||+ ++|||++...+.+.++ .++..++.+|+...++. |..+|.|++||+.+.......+
T Consensus 86 VtaVgF~~dgrWMyTgseDgt-~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis-~dqsg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSEDGT-VKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELIS-GDQSGNIRVWDLGENSCTHELI 163 (311)
T ss_pred eEEEEEeecCeEEEecCCCce-EEEEeccCcccchhccCCCCcceEEecCCcceEEe-ecCCCcEEEEEccCCccccccC
Confidence 999999999999999999999 9999999976665554 55888999999988887 9999999999999886655666
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceee------------------eeccCCcEEEEEeCCCcEEEE
Q psy3710 266 AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN------------------ELRRDSSYLCVSSDHGTVHVF 327 (424)
Q Consensus 266 ~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~------------------~~~~~~~~l~~~~~d~~i~iw 327 (424)
+.....|.+++..|||.+|+.+...|+ .++|++-..+... .|+|++++||+++.|.+++||
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~nnkG~-cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAANNKGN-CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEecCCcc-EEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEE
Confidence 677789999999999999999999999 9999997643222 367999999999999999999
Q ss_pred EccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCCcceee
Q psy3710 328 SVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWR 401 (424)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~~~ 401 (424)
+.++.-++. ...+.|..-+.+|+||.||+||++|++|+.+++|++. .++.++
T Consensus 243 n~~~~~kle---------------------~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~-~~k~v~ 294 (311)
T KOG0315|consen 243 NTDDFFKLE---------------------LVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS-AGKEVR 294 (311)
T ss_pred ecCCceeeE---------------------EEeecCCceEEeeeeccCccEEEecCCCCceeecccc-cCceee
Confidence 999851111 1133445567899999999999999999999999998 444433
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=263.72 Aligned_cols=319 Identities=18% Similarity=0.296 Sum_probs=260.2
Q ss_pred ccccCCceEEEEECCCCC-eeEeecCCe-EEEEeCCc------Ccccccc--------cccCCCeeeEEEeccCceEEEE
Q psy3710 6 SSTYKNGLLYAGFNQDQG-CFACGMEDG-FRIYNCDP------LKEKERQ--------DFTDGGLGHVEMLFRCNYLALV 69 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~-~la~g~~~~-i~iw~~~~------~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~ 69 (424)
...|+.+|.+++|+|-.. .||+|+.+. .++|++.. .+...++ ......|++++|+.+|+.||+.
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG 253 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG 253 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence 344999999999999876 888888877 99999864 1111111 1134689999999999999999
Q ss_pred eCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeE
Q psy3710 70 GGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLC 145 (424)
Q Consensus 70 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 145 (424)
+ .||.+++|+. +|..+.++. |.++|.++.|+..|.++++ |+++.+||.. .+...+.+..|..+ ..
T Consensus 254 ~-------~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~-~g~~~q~f~~~s~~--~l 322 (524)
T KOG0273|consen 254 S-------EDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAH-TGTVKQQFEFHSAP--AL 322 (524)
T ss_pred e-------cCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEecc-CceEEEeeeeccCC--cc
Confidence 8 6899999996 677777777 9999999999999988876 9999999986 77788888887755 34
Q ss_pred EEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe
Q psy3710 146 VLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR 225 (424)
Q Consensus 146 ~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 225 (424)
.+.|-.+. .+++ .+.|+.|+++.+... .+..++.+|.++|.++.|+|.|.+|++++.|++ ++||.+........+.
T Consensus 323 DVdW~~~~-~F~t-s~td~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T-lkiWs~~~~~~~~~l~ 398 (524)
T KOG0273|consen 323 DVDWQSND-EFAT-SSTDGCIHVCKVGED-RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT-LKIWSMGQSNSVHDLQ 398 (524)
T ss_pred ceEEecCc-eEee-cCCCceEEEEEecCC-CcceeeecccCceEEEEECCCCceEEEecCCCe-eEeeecCCCcchhhhh
Confidence 45665443 4565 899999999999875 899999999999999999999999999999999 9999998877766666
Q ss_pred cc---eeeeeecC--------CCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q psy3710 226 RG---LCVLCPNS--------NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLI 294 (424)
Q Consensus 226 ~~---~~~~~~~~--------~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i 294 (424)
.+ +..+.++| ..+..+++++.|++|++||+..+. ++..+..|..+|.+++|+|+|+++|+|+.||. |
T Consensus 399 ~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv-~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~-V 476 (524)
T KOG0273|consen 399 AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV-PIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC-V 476 (524)
T ss_pred hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc-eeEeeccCCCceEEEEecCCCcEEEecCCCCe-e
Confidence 54 44555555 445678889999999999999987 46667789999999999999999999999999 9
Q ss_pred EEEECCCCceeeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEec
Q psy3710 295 RVFDTGSGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGA 374 (424)
Q Consensus 295 ~iwd~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 374 (424)
.+|+.++++..+++..++. | ..++|+.
T Consensus 477 ~iws~~~~~l~~s~~~~~~------------I-----------------------------------------fel~Wn~ 503 (524)
T KOG0273|consen 477 HIWSTKTGKLVKSYQGTGG------------I-----------------------------------------FELCWNA 503 (524)
T ss_pred EeccccchheeEeecCCCe------------E-----------------------------------------EEEEEcC
Confidence 9999999888777654432 1 2357888
Q ss_pred CCCeEEEEeccCcEEEEEec
Q psy3710 375 DSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 375 ~~~~l~~~~~dg~v~~~~~~ 394 (424)
+|.+|..+-+||.+.+-|+.
T Consensus 504 ~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 504 AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCEEEEEecCCCceEEEec
Confidence 88888888888888887764
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=245.25 Aligned_cols=270 Identities=13% Similarity=0.187 Sum_probs=235.2
Q ss_pred cccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEee-cCCeEEEEecCCceEEEe---eccEE
Q psy3710 46 RQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEF-NAPVKGVRLRRDKIVVVL---EGLIK 121 (424)
Q Consensus 46 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~---~~~i~ 121 (424)
.+..|.+.|.++.|+++.+++++++ .||.+.|||.-+...++-+.. ...|..++|+|.+.++|. |+...
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaS-------qDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSAS-------QDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred EecccccceeeeEecCCcCeEEeec-------cCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence 3566899999999999999999999 689999999999888888884 678999999999999997 88999
Q ss_pred EEeecCC--C---ceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEcc-
Q psy3710 122 VYTFIQC--P---QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ- 195 (424)
Q Consensus 122 v~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~- 195 (424)
||++... . +..+.+.+|..- +.+..|-+|+ .|++ ++.|.+..+||++++ +....+.+|.+.|.+++++|
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgy--lScC~f~dD~-~ilT-~SGD~TCalWDie~g-~~~~~f~GH~gDV~slsl~p~ 197 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGY--LSCCRFLDDN-HILT-GSGDMTCALWDIETG-QQTQVFHGHTGDVMSLSLSPS 197 (343)
T ss_pred EEecccccccccceeeeeecCccce--eEEEEEcCCC-ceEe-cCCCceEEEEEcccc-eEEEEecCCcccEEEEecCCC
Confidence 9999622 1 344556777643 5555666554 5666 999999999999998 78889999999999999999
Q ss_pred CCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEE
Q psy3710 196 TGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCI 275 (424)
Q Consensus 196 ~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 275 (424)
+++.+++|+.|+. .++||++.+.+.+.|. +|+..|+++
T Consensus 198 ~~ntFvSg~cD~~-aklWD~R~~~c~qtF~-----------------------------------------ghesDINsv 235 (343)
T KOG0286|consen 198 DGNTFVSGGCDKS-AKLWDVRSGQCVQTFE-----------------------------------------GHESDINSV 235 (343)
T ss_pred CCCeEEecccccc-eeeeeccCcceeEeec-----------------------------------------ccccccceE
Confidence 9999999999999 9999999998877775 899999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec--------------cCCcEEEEEeCCCcEEEEEccccccccccccc
Q psy3710 276 ALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR--------------RDSSYLCVSSDHGTVHVFSVDEAQKINKQSSL 341 (424)
Q Consensus 276 ~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~--------------~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~ 341 (424)
.|.|+|.-+++|+.|++ .|+||++..+.+..|+ ..|++|.+|..|.++.+||.-.++....
T Consensus 236 ~ffP~G~afatGSDD~t-cRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~---- 310 (343)
T KOG0286|consen 236 RFFPSGDAFATGSDDAT-CRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGV---- 310 (343)
T ss_pred EEccCCCeeeecCCCce-eEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEE----
Confidence 99999999999999999 9999999988887654 4789999999999999999988775433
Q ss_pred eeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEE
Q psy3710 342 ASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFM 392 (424)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~ 392 (424)
...|...|+.+..+|||.-|++|+-|.+++||.
T Consensus 311 ------------------L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 311 ------------------LAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ------------------eeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 446778899999999999999999999999994
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=246.12 Aligned_cols=276 Identities=16% Similarity=0.191 Sum_probs=236.6
Q ss_pred ccccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcc-cccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCe
Q psy3710 4 GTSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKE-KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNR 81 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 81 (424)
..+.+|++.|+.+.|+|+|.+||+|+.|. |.+|++..... ......|.+.|..+.|..+++.+++++ .|++
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~g-------tDk~ 113 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCG-------TDKT 113 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEec-------CCce
Confidence 34889999999999999999999998888 99999654333 555678999999999999999999999 7999
Q ss_pred EEEEECCCCcEEEEEe-ecCCeEEEEecCCce-EEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeE
Q psy3710 82 VMIWDDLKKQVVICLE-FNAPVKGVRLRRDKI-VVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLL 156 (424)
Q Consensus 82 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (424)
++.||+++|+.++.++ |..-|+++.-+.-+. ++.+ |+++++||++ ....+++++. ...+.++.|..++..+
T Consensus 114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R-~k~~~~t~~~---kyqltAv~f~d~s~qv 189 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR-KKEAIKTFEN---KYQLTAVGFKDTSDQV 189 (338)
T ss_pred EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec-ccchhhcccc---ceeEEEEEecccccce
Confidence 9999999999999998 888888888665554 4444 8999999998 5666665533 3568899999999999
Q ss_pred EEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCc----ceeeEEecc-----
Q psy3710 157 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG----QKLNELRRG----- 227 (424)
Q Consensus 157 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~----~~~~~~~~~----- 227 (424)
.+ |+-|+.|++||++.+ .....+.+|.++|+.+..+|+|.++.+-+.|.+ +++||++-. +++..+.++
T Consensus 190 ~s-ggIdn~ikvWd~r~~-d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp~~p~~R~v~if~g~~hnfe 266 (338)
T KOG0265|consen 190 IS-GGIDNDIKVWDLRKN-DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRPFAPSQRCVKIFQGHIHNFE 266 (338)
T ss_pred ee-ccccCceeeeccccC-cceEEeecccCceeeEEeccCCCccccccccce-EEEEEecccCCCCceEEEeecchhhhh
Confidence 98 999999999999986 788899999999999999999999999999999 999999743 446666655
Q ss_pred --eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q psy3710 228 --LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRV 296 (424)
Q Consensus 228 --~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~i 296 (424)
.-..+++|++..+-+ |+.|..+++||..... .+..+++|.+.|++++|+|...+|.+++.|.+ |.+
T Consensus 267 knlL~cswsp~~~~i~a-gs~dr~vyvwd~~~r~-~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~-i~l 334 (338)
T KOG0265|consen 267 KNLLKCSWSPNGTKITA-GSADRFVYVWDTTSRR-ILYKLPGHYGSVNEVDFHPTEPIILSCSSDKT-IYL 334 (338)
T ss_pred hhcceeeccCCCCcccc-ccccceEEEeeccccc-EEEEcCCcceeEEEeeecCCCcEEEEeccCce-eEe
Confidence 234578888887776 9999999999998754 46678899999999999999999999999998 775
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=267.91 Aligned_cols=370 Identities=16% Similarity=0.252 Sum_probs=297.9
Q ss_pred CCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECC
Q psy3710 10 KNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL 88 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~ 88 (424)
...|+|++-+|+...||+|..|| |+||+..+.........|...|+.+.|...|..+++.+ .|+.|.+||+-
T Consensus 65 k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGs-------kDt~IIvwDlV 137 (888)
T KOG0306|consen 65 KAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGS-------KDTDIIVWDLV 137 (888)
T ss_pred cceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecC-------CCccEEEEEec
Confidence 35899999999999999999999 99999998877777888999999999999999998887 79999999998
Q ss_pred CCcEEEEEe-ecCCeEEEEecCCceEEE-e--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCC
Q psy3710 89 KKQVVICLE-FNAPVKGVRLRRDKIVVV-L--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSG 164 (424)
Q Consensus 89 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg 164 (424)
...-...+. |+..|+..-|..+..++. + |+.|++||++ +..+..+.-.|... +.++++.+ +.+++ ++.|+
T Consensus 138 ~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~-tqhCf~Thvd~r~E--iw~l~~~~--~~lvt-~~~ds 211 (888)
T KOG0306|consen 138 GEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLE-TQHCFETHVDHRGE--IWALVLDE--KLLVT-AGTDS 211 (888)
T ss_pred cceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecc-cceeeeEEecccce--EEEEEEec--ceEEE-EecCC
Confidence 877788888 899999999988554444 3 9999999997 77777777766644 66777765 56666 88899
Q ss_pred eEEEEeCCCCC---------------------------------------------------------------------
Q psy3710 165 HVHLVDLADPE--------------------------------------------------------------------- 175 (424)
Q Consensus 165 ~i~i~d~~~~~--------------------------------------------------------------------- 175 (424)
.+++|++....
T Consensus 212 e~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~K 291 (888)
T KOG0306|consen 212 ELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAK 291 (888)
T ss_pred ceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhh
Confidence 99999982000
Q ss_pred ---------------------------------------------------------------CCC---------ccccc
Q psy3710 176 ---------------------------------------------------------------RPP---------LDIAA 183 (424)
Q Consensus 176 ---------------------------------------------------------------~~~---------~~~~~ 183 (424)
... ..+.+
T Consensus 292 kka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~G 371 (888)
T KOG0306|consen 292 KKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGG 371 (888)
T ss_pred hhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeecc
Confidence 000 23457
Q ss_pred ccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEeccee-eeeecCCCCeEEEEeecCCeEEEEeCCCCCCCC
Q psy3710 184 HEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLC-VLCPNSNNSLLAFPGRKSGHVHLVDLADPERPP 262 (424)
Q Consensus 184 ~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~ 262 (424)
|...|.+++++.+...+++++. +. +++|+..+.++++++..+.. +.+|-|.+.+++ .|...|.+.+||+.+.. .+
T Consensus 372 HR~dVRsl~vS~d~~~~~Sga~-~S-ikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv-~G~k~Gel~vfdlaS~~-l~ 447 (888)
T KOG0306|consen 372 HRSDVRSLCVSSDSILLASGAG-ES-IKIWNRDTLKCIRTITCGYILASKFVPGDRYIV-LGTKNGELQVFDLASAS-LV 447 (888)
T ss_pred chhheeEEEeecCceeeeecCC-Cc-EEEEEccCcceeEEeccccEEEEEecCCCceEE-EeccCCceEEEEeehhh-hh
Confidence 8889999999988777777655 44 99999999999999998844 345555555555 49999999999999866 35
Q ss_pred eeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCC-----Cce---e----------------eeeccCCcEEEEE
Q psy3710 263 LDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS-----GQK---L----------------NELRRDSSYLCVS 318 (424)
Q Consensus 263 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~-----~~~---~----------------~~~~~~~~~l~~~ 318 (424)
.+.++|.+.|.+++.+||++.+++||.|.+ |++||..- |.. + ..++|||++||++
T Consensus 448 Eti~AHdgaIWsi~~~pD~~g~vT~saDkt-VkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 448 ETIRAHDGAIWSISLSPDNKGFVTGSADKT-VKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred hhhhccccceeeeeecCCCCceEEecCCcE-EEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEE
Confidence 566699999999999999999999999999 99999742 111 1 1367999999999
Q ss_pred eCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCCcc
Q psy3710 319 SDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGE 398 (424)
Q Consensus 319 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~ 398 (424)
=-|.+++||-+++.+.. .+..+|.=||.+|..|||++.++|||.|.+|++|-++ -|+
T Consensus 527 LLdnTVkVyflDtlKFf----------------------lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd-FGD 583 (888)
T KOG0306|consen 527 LLDNTVKVYFLDTLKFF----------------------LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD-FGD 583 (888)
T ss_pred eccCeEEEEEecceeee----------------------eeecccccceeEEeccCCcCeEEeccCCCceEEeccc-cch
Confidence 99999999999996542 2345677889999999999999999999999999997 788
Q ss_pred eeeeeeh-----hhheecCCCce-eeEE
Q psy3710 399 CWRDVYI-----QFLEMTNDSNL-LSCI 420 (424)
Q Consensus 399 ~~~~~~~-----~~~~~~~d~~~-l~~~ 420 (424)
|-+..+. ..+.|-|+..+ |.|+
T Consensus 584 CHKS~fAHdDSvm~V~F~P~~~~FFt~g 611 (888)
T KOG0306|consen 584 CHKSFFAHDDSVMSVQFLPKTHLFFTCG 611 (888)
T ss_pred hhhhhhcccCceeEEEEcccceeEEEec
Confidence 8775443 45667777644 4443
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=261.82 Aligned_cols=277 Identities=18% Similarity=0.218 Sum_probs=240.9
Q ss_pred CCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECC
Q psy3710 10 KNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL 88 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~ 88 (424)
.-+|..+.|.|+|+.|++|+..| +.+|+.....-....+.|+..|..+.|++++.++++.. .++.|++|+..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD-------~gG~iKyWqpn 168 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGD-------KGGMIKYWQPN 168 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcC-------CCceEEecccc
Confidence 45899999999999999999999 99999866655555777999999999999999998887 57999999975
Q ss_pred CCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCC
Q psy3710 89 KKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSG 164 (424)
Q Consensus 89 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg 164 (424)
-........ |...|++++|+|+...+++ ||.|+|||.. ..+....+.+|. -.+.++.|+|...+|++ |+.|.
T Consensus 169 mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~-~~kee~vL~GHg--wdVksvdWHP~kgLias-gskDn 244 (464)
T KOG0284|consen 169 MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR-MPKEERVLRGHG--WDVKSVDWHPTKGLIAS-GSKDN 244 (464)
T ss_pred hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc-CCchhheeccCC--CCcceeccCCccceeEE-ccCCc
Confidence 444333333 4589999999987654443 9999999997 666666777776 44888999999999998 99999
Q ss_pred eEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEE
Q psy3710 165 HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLA 241 (424)
Q Consensus 165 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 241 (424)
.|++||.+++ .++.++.+|+..|..+.|+|++++|+++|.|.. ++++|+++.+.++.++++ +..+.++|-...++
T Consensus 245 lVKlWDprSg-~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~-~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lf 322 (464)
T KOG0284|consen 245 LVKLWDPRSG-SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS-CKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLF 322 (464)
T ss_pred eeEeecCCCc-chhhhhhhccceEEEEEEcCCCCeeEEccCCce-EEEEehhHhHHHHHhhcchhhheeeccccccccce
Confidence 9999999998 899999999999999999999999999999999 999999988888888766 78889999999999
Q ss_pred EEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 242 FPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 242 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
.+|+.||.|..|.+...+.....-.+|...|.+++|+|=|..|++|+.|.+ +++|.-.
T Consensus 323 tsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t-~rfw~r~ 380 (464)
T KOG0284|consen 323 TSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRT-VRFWTRN 380 (464)
T ss_pred eeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcc-eeeeccC
Confidence 999999999999998555444445589999999999999999999999999 9999754
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=242.40 Aligned_cols=312 Identities=17% Similarity=0.181 Sum_probs=265.2
Q ss_pred ccccccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCC
Q psy3710 2 NLGTSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNN 80 (424)
Q Consensus 2 ~~~~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~ 80 (424)
.+.++..|.++|.+++.+|+.+++|+|+.|. -.+|+..++........|+.+|.++.|+.++.+||+.. -+|
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGd-------msG 128 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGD-------MSG 128 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecC-------CCc
Confidence 4567889999999999999999999998888 99999999998888889999999999999999999888 579
Q ss_pred eEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeE
Q psy3710 81 RVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLL 156 (424)
Q Consensus 81 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (424)
.|+||...++.....+. .-+.+.-+.|+|...+++. ||.+.+|.+. .....+.+.+|..+ +.+=.+.|+|+.+
T Consensus 129 ~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip-~~~~~kv~~Gh~~~--ct~G~f~pdGKr~ 205 (399)
T KOG0296|consen 129 KVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP-SQALCKVMSGHNSP--CTCGEFIPDGKRI 205 (399)
T ss_pred cEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECC-CcceeeEecCCCCC--cccccccCCCceE
Confidence 99999999999998887 5678888999998876665 9999999995 55777888888755 6777889999999
Q ss_pred EEeeccCCeEEEEeCCCCCCCCcccc-cccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc--------
Q psy3710 157 AFPGRKSGHVHLVDLADPERPPLDIA-AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG-------- 227 (424)
Q Consensus 157 ~~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~-------- 227 (424)
++ ++.||+|++|++.++ ++...+. ....+..++.++..+..++.|+.++. +++-+..+++.+....+.
T Consensus 206 ~t-gy~dgti~~Wn~ktg-~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~-~~~~~~~sgKVv~~~n~~~~~l~~~~ 282 (399)
T KOG0296|consen 206 LT-GYDDGTIIVWNPKTG-QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV-ACGVNNGSGKVVNCNNGTVPELKPSQ 282 (399)
T ss_pred EE-EecCceEEEEecCCC-ceeEEecccccCcCCccccccccceeEeccCCcc-EEEEccccceEEEecCCCCccccccc
Confidence 98 999999999999998 5555444 33456788999999999999999999 999999999888776631
Q ss_pred ---eeeeeecCC--CCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCC
Q psy3710 228 ---LCVLCPNSN--NSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG 302 (424)
Q Consensus 228 ---~~~~~~~~~--~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~ 302 (424)
..++.+.|. .-.++++|+-||+|.|||+.... .+..-.|..+|+.+.|-+ ..+|++++.+|. |+.||.++|
T Consensus 283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~-v~~wDaRtG 358 (399)
T KOG0296|consen 283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST--LRHICEHEDGVTKLKWLN-TDYLLTACANGK-VRQWDARTG 358 (399)
T ss_pred hhhhhhhhhcccccccchhhcccccceEEEEecccch--hheeccCCCceEEEEEcC-cchheeeccCce-EEeeecccc
Confidence 233333332 23466779999999999998765 333447999999999998 689999999999 999999999
Q ss_pred ceeeee------------ccCCcEEEEEeCCCcEEEEEcc
Q psy3710 303 QKLNEL------------RRDSSYLCVSSDHGTVHVFSVD 330 (424)
Q Consensus 303 ~~~~~~------------~~~~~~l~~~~~d~~i~iw~~~ 330 (424)
+++.++ +|+.++++++|.|++.+||+..
T Consensus 359 ~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 359 QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 998864 5899999999999999999874
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=258.69 Aligned_cols=300 Identities=12% Similarity=0.193 Sum_probs=260.9
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEE
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMI 84 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 84 (424)
+..|++.|.++.|+|...++.++--+| |.|||.++...+...+..+-+|....|....+.+++.+ .|..|+|
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~Gs-------DD~~IrV 81 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGS-------DDMQIRV 81 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEec-------CCceEEE
Confidence 667999999999999999999998888 99999999998888888888999999999999998888 6899999
Q ss_pred EECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEee
Q psy3710 85 WDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPG 160 (424)
Q Consensus 85 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (424)
|+..+++.++.+. |++-|++++.+|..-++.+ |-.|++||.+....+.+++++|.+- +..++++|....-++++
T Consensus 82 fnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy--VMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 82 FNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY--VMQVAFNPKDPNTFASA 159 (794)
T ss_pred EecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE--EEEEEecCCCccceeee
Confidence 9999999999999 9999999999999977765 7899999998777888999999854 88899998665544459
Q ss_pred ccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCC--CEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecC
Q psy3710 161 RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTG--TRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNS 235 (424)
Q Consensus 161 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~ 235 (424)
+-|++|++|.+... .+..++++|...|+++.+-+.| .+|++|+.|.+ +++||..+..+++++.+| +..++++|
T Consensus 160 sLDrTVKVWslgs~-~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQtk~CV~TLeGHt~Nvs~v~fhp 237 (794)
T KOG0276|consen 160 SLDRTVKVWSLGSP-HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQTKSCVQTLEGHTNNVSFVFFHP 237 (794)
T ss_pred eccccEEEEEcCCC-CCceeeeccccCcceEEeccCCCcceEEecCCCce-EEEeecchHHHHHHhhcccccceEEEecC
Confidence 99999999999987 7889999999999999998854 69999999999 999999999999999987 56667777
Q ss_pred CCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeeccCCcEE
Q psy3710 236 NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYL 315 (424)
Q Consensus 236 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~l 315 (424)
.-+ ++++|++||+++||+..+.+. ..++.-.-..+.|++-.+.++.++.|..+| ..+..+-..++..+..+.|+.+
T Consensus 238 ~lp-iiisgsEDGTvriWhs~Ty~l-E~tLn~gleRvW~I~~~k~~~~i~vG~Deg--~i~v~lgreeP~vsMd~~gKIi 313 (794)
T KOG0276|consen 238 ELP-IIISGSEDGTVRIWNSKTYKL-EKTLNYGLERVWCIAAHKGDGKIAVGFDEG--SVTVKLGREEPAVSMDSNGKII 313 (794)
T ss_pred CCc-EEEEecCCccEEEecCcceeh-hhhhhcCCceEEEEeecCCCCeEEEeccCC--cEEEEccCCCCceeecCCccEE
Confidence 665 455699999999999988763 334445567899999999888899998888 5677888888888999998877
Q ss_pred EEEeC
Q psy3710 316 CVSSD 320 (424)
Q Consensus 316 ~~~~~ 320 (424)
-+...
T Consensus 314 wa~~~ 318 (794)
T KOG0276|consen 314 WAVHS 318 (794)
T ss_pred EEcCc
Confidence 76544
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=254.54 Aligned_cols=281 Identities=13% Similarity=0.151 Sum_probs=237.5
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcc---cccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCC
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKE---KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNN 80 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~ 80 (424)
.+..|.+.|..+.||++|++||+++.+. ..||.+..... ......|..+|..+.|+||.+++++++ .|.
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg-------~~e 291 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG-------FDE 291 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC-------chH
Confidence 3788999999999999999999999998 88998765544 555667899999999999999999999 567
Q ss_pred eEEEEECCCCcEEEEEee--cCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCe
Q psy3710 81 RVMIWDDLKKQVVICLEF--NAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSL 155 (424)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (424)
.+.+||+.+|.....+.+ ...+.+++|.||+..+++ |+.+..||++ +......++-.. ..+..++.++||++
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD--gn~~~~W~gvr~-~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD--GNILGNWEGVRD-PKVHDLAITYDGKY 368 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC--cchhhccccccc-ceeEEEEEcCCCcE
Confidence 899999999999998884 478999999999976665 9999999984 555555554433 34778999999999
Q ss_pred EEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc-----eee
Q psy3710 156 LAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG-----LCV 230 (424)
Q Consensus 156 l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~-----~~~ 230 (424)
+++ ...|..|++|+.++. .-..+.....+|+++..+.+++++++.-.+.. +++||++..+.++.+.++ +..
T Consensus 369 vl~-v~~d~~i~l~~~e~~--~dr~lise~~~its~~iS~d~k~~LvnL~~qe-i~LWDl~e~~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 369 VLL-VTVDKKIRLYNREAR--VDRGLISEEQPITSFSISKDGKLALVNLQDQE-IHLWDLEENKLVRKYFGHKQGHFIIR 444 (519)
T ss_pred EEE-Eecccceeeechhhh--hhhccccccCceeEEEEcCCCcEEEEEcccCe-eEEeecchhhHHHHhhcccccceEEE
Confidence 998 789999999999874 22223445678999999999999999989999 999999988888877765 334
Q ss_pred eeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEECCC
Q psy3710 231 LCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ-TGTRLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 231 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~~i~iwd~~~ 301 (424)
.||-..+..++++|++|+.|+||+..+++ ++..+.+|...|++++|+| +...+|+|+.||+ ||||.+..
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWhr~sgk-ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgt-IRIWg~~~ 514 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWHRISGK-LLAVLSGHSKTVNCVSWNPADPEMFASASDDGT-IRIWGPSD 514 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEEccCCc-eeEeecCCcceeeEEecCCCCHHHhhccCCCCe-EEEecCCc
Confidence 56767777899999999999999999977 6788899999999999999 5678999999999 99998764
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=247.23 Aligned_cols=273 Identities=22% Similarity=0.299 Sum_probs=242.0
Q ss_pred CCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECC
Q psy3710 10 KNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL 88 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~ 88 (424)
+..|++++|+.+|..||+|..+| ++||+.. +.....+..|.++|..+.|...++++++.+ .|+++.+||..
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~-------vD~ttilwd~~ 306 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGG-------VDGTTILWDAH 306 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEecc-------CCccEEEEecc
Confidence 46899999999999999999999 9999954 556666788999999999999999999988 79999999999
Q ss_pred CCcEEEEEe-ecCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCe
Q psy3710 89 KKQVVICLE-FNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGH 165 (424)
Q Consensus 89 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~ 165 (424)
+|...+.+. |..+-..+.|-.+..++.+ |+.|+|+.+. ...+..++.+|.++ +.++.|+|.+.+|++ ++.|++
T Consensus 307 ~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~-~~~P~~t~~GH~g~--V~alk~n~tg~LLaS-~SdD~T 382 (524)
T KOG0273|consen 307 TGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVG-EDRPVKTFIGHHGE--VNALKWNPTGSLLAS-CSDDGT 382 (524)
T ss_pred CceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEec-CCCcceeeecccCc--eEEEEECCCCceEEE-ecCCCe
Confidence 999999999 4555588999888877765 8999999996 77889999998866 889999999999998 999999
Q ss_pred EEEEeCCCCCCCCcccccccCCeEEEEEccCC---------CEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeee
Q psy3710 166 VHLVDLADPERPPLDIAAHEAPLSCIALNQTG---------TRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCP 233 (424)
Q Consensus 166 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~ 233 (424)
++||.+... .....+.+|...|..+.|+|+| ..+++++.|++ |++||+..+.++..|..| +..+++
T Consensus 383 lkiWs~~~~-~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst-V~lwdv~~gv~i~~f~kH~~pVysvaf 460 (524)
T KOG0273|consen 383 LKIWSMGQS-NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST-VKLWDVESGVPIHTLMKHQEPVYSVAF 460 (524)
T ss_pred eEeeecCCC-cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe-EEEEEccCCceeEeeccCCCceEEEEe
Confidence 999998875 7888999999999999999965 47999999999 999999999999999544 889999
Q ss_pred cCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 234 NSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 234 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
+|++.+++. |+.||.|++|+.++++. .+.. ...+.|..++|+.+|.+|..+-.|+. +++.|++
T Consensus 461 S~~g~ylAs-Gs~dg~V~iws~~~~~l-~~s~-~~~~~Ifel~Wn~~G~kl~~~~sd~~-vcvldlr 523 (524)
T KOG0273|consen 461 SPNGRYLAS-GSLDGCVHIWSTKTGKL-VKSY-QGTGGIFELCWNAAGDKLGACASDGS-VCVLDLR 523 (524)
T ss_pred cCCCcEEEe-cCCCCeeEeccccchhe-eEee-cCCCeEEEEEEcCCCCEEEEEecCCC-ceEEEec
Confidence 999998886 99999999999998773 3333 34567999999999999999999999 9998875
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=231.11 Aligned_cols=289 Identities=12% Similarity=0.136 Sum_probs=247.2
Q ss_pred CccccccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCC
Q psy3710 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPN 79 (424)
Q Consensus 1 m~~~~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d 79 (424)
|+...|+||+.+++.+.|+.+|.+|.+++.|. ..+|-...++.+..+..|.+.|.++....+.+.+++.+ .|
T Consensus 1 mrpi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGS-------AD 73 (327)
T KOG0643|consen 1 MRPILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGS-------AD 73 (327)
T ss_pred CCccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeecc-------cc
Confidence 66677999999999999999999999999888 99999889999999999999999999999999999888 68
Q ss_pred CeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe--------eccEEEEeecCC------CceeEEEeeCCCCCeeE
Q psy3710 80 NRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL--------EGLIKVYTFIQC------PQQLHVFETNPNPKGLC 145 (424)
Q Consensus 80 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--------~~~i~v~~~~~~------~~~~~~~~~~~~~~~~~ 145 (424)
.++++||+++|+++.+++.+.+|..+.|++++.++.. .+.|.++|++.. .++...+..+. ..+.
T Consensus 74 ~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--skit 151 (327)
T KOG0643|consen 74 QTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--SKIT 151 (327)
T ss_pred ceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc--ccee
Confidence 9999999999999999999999999999999855543 468999999632 23455555555 4577
Q ss_pred EEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe
Q psy3710 146 VLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR 225 (424)
Q Consensus 146 ~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 225 (424)
..-|.|-++.|++ |.+||.|.+||++++.+.+...+.|...|+.+.++|+..++++++.|.+ -++||+++-+.++++.
T Consensus 152 ~a~Wg~l~~~ii~-Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt-akl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 152 SALWGPLGETIIA-GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT-AKLVDVRTLEVLKTYT 229 (327)
T ss_pred eeeecccCCEEEE-ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc-ceeeeccceeeEEEee
Confidence 8889999999998 9999999999999987778888899999999999999999999999999 9999999999998886
Q ss_pred --cceeeeeecCCCCeEEEEeecCC-eEEEEeCCCCC-----------CCCeeeccCCCCeEEEEEcCCCCEEEEEeCCC
Q psy3710 226 --RGLCVLCPNSNNSLLAFPGRKSG-HVHLVDLADPE-----------RPPLDIAAHEAPLSCIALNQTGTRLATASYKG 291 (424)
Q Consensus 226 --~~~~~~~~~~~~~~~~~~~~~dg-~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 291 (424)
.+++..+++|....++..|+.+. .|.--+.+.++ +....+++|-++|++++|+|+|+..++|+.||
T Consensus 230 te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG 309 (327)
T KOG0643|consen 230 TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDG 309 (327)
T ss_pred ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCc
Confidence 45888999999988888666543 23222333322 12344579999999999999999999999999
Q ss_pred cEEEEEECCC
Q psy3710 292 TLIRVFDTGS 301 (424)
Q Consensus 292 ~~i~iwd~~~ 301 (424)
. ||+.-...
T Consensus 310 ~-VR~h~Fd~ 318 (327)
T KOG0643|consen 310 Y-VRLHHFDS 318 (327)
T ss_pred e-EEEEEecc
Confidence 9 99876543
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=244.27 Aligned_cols=280 Identities=19% Similarity=0.245 Sum_probs=241.4
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEE
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMI 84 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 84 (424)
+.+|.+.|.|+++.|..++|++|+.|+ ++|||+.+++.......|...+..+++++...|+++++ .|+.|+.
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g-------edk~VKC 219 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG-------EDKQVKC 219 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec-------CCCeeEE
Confidence 789999999999999999999999999 99999999999888888999999999999999999999 6899999
Q ss_pred EECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEee
Q psy3710 85 WDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPG 160 (424)
Q Consensus 85 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (424)
||++..+.++.+. |-..|.+++.+|....+++ |..++|||++ +...+..+.+|..+ +..+.+.|-...+++ |
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR-tr~~V~~l~GH~~~--V~~V~~~~~dpqvit-~ 295 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR-TRASVHVLSGHTNP--VASVMCQPTDPQVIT-G 295 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeec-ccceEEEecCCCCc--ceeEEeecCCCceEE-e
Confidence 9999999999888 8999999999999887776 8999999998 88889999999876 677777777777887 9
Q ss_pred ccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc-eeeeeecCCCCe
Q psy3710 161 RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG-LCVLCPNSNNSL 239 (424)
Q Consensus 161 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~ 239 (424)
+.|++|++||+..+ +....+..|+..|.+++.+|....+++++.|. |+-|++..+..+..+.++ ....++..+...
T Consensus 296 S~D~tvrlWDl~ag-kt~~tlt~hkksvral~lhP~e~~fASas~dn--ik~w~~p~g~f~~nlsgh~~iintl~~nsD~ 372 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAG-KTMITLTHHKKSVRALCLHPKENLFASASPDN--IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG 372 (460)
T ss_pred cCCceEEEeeeccC-ceeEeeecccceeeEEecCCchhhhhccCCcc--ceeccCCccchhhccccccceeeeeeeccCc
Confidence 99999999999987 77788889999999999999999999999988 899999999988887766 233444555555
Q ss_pred EEEEeecCCeEEEEeCCCCCCCCee--e--c---cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 240 LAFPGRKSGHVHLVDLADPERPPLD--I--A---AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 240 ~~~~~~~dg~i~i~d~~~~~~~~~~--~--~---~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
++++|+++|.+.+||.+++...... . . ..+..|++.+|...|..|++|..|.+ |++|.-.
T Consensus 373 v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKt-Ik~~keD 439 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKT-IKMYKED 439 (460)
T ss_pred eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcc-eEEEecc
Confidence 6777999999999999987643221 1 1 23456788888888888888888888 8888543
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=261.91 Aligned_cols=306 Identities=19% Similarity=0.320 Sum_probs=232.4
Q ss_pred CCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECC
Q psy3710 10 KNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL 88 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~ 88 (424)
...++|+.|++|+..||.|-.+. |++|.+.+.+....... ..+ ..+-+.+ +|-.+.+.|..
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~--~~l---------~~~d~~s-------ad~~~~~~D~~ 439 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDA--SDL---------SNIDTES-------ADVDVDMLDDD 439 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccch--hhh---------ccccccc-------cchhhhhcccc
Confidence 45799999999999999999888 99999987654322211 001 0010112 23446666666
Q ss_pred CCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCC
Q psy3710 89 KKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSG 164 (424)
Q Consensus 89 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg 164 (424)
.....+++- |.++|....|+|+..++.+ |+++++|.+. +...+-.+++|..| ++.+.|+|-|-++|+ ++.|+
T Consensus 440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~-t~s~~V~y~GH~~P--VwdV~F~P~GyYFat-as~D~ 515 (707)
T KOG0263|consen 440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLD-TWSCLVIYKGHLAP--VWDVQFAPRGYYFAT-ASHDQ 515 (707)
T ss_pred CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecc-cceeEEEecCCCcc--eeeEEecCCceEEEe-cCCCc
Confidence 655555554 9999999999999988876 8999999997 77888888888866 778889999999998 99999
Q ss_pred eEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEe
Q psy3710 165 HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPG 244 (424)
Q Consensus 165 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (424)
+-++|..... .+.+.+.+|.+.|.|+.|+|+..++++||.|.+ |++||+.+|..++.|.
T Consensus 516 tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~~G~~VRiF~------------------- 574 (707)
T KOG0263|consen 516 TARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVSTGNSVRIFT------------------- 574 (707)
T ss_pred eeeeeecccC-CchhhhcccccccceEEECCcccccccCCCCce-EEEEEcCCCcEEEEec-------------------
Confidence 9999999886 899999999999999999999999999999999 9999999887765553
Q ss_pred ecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceee------------eeccCC
Q psy3710 245 RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN------------ELRRDS 312 (424)
Q Consensus 245 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~------------~~~~~~ 312 (424)
+|.++|++++|||+|++|++|+.|+. |++||+.+++.+. +|+.+|
T Consensus 575 ----------------------GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg 631 (707)
T KOG0263|consen 575 ----------------------GHKGPVTALAFSPCGRYLASGDEDGL-IKIWDLANGSLVKQLKGHTGTIYSLSFSRDG 631 (707)
T ss_pred ----------------------CCCCceEEEEEcCCCceEeecccCCc-EEEEEcCCCcchhhhhcccCceeEEEEecCC
Confidence 79999999999999999999999999 9999999887665 367899
Q ss_pred cEEEEEeCCCcEEEEEccccccccccccceeee---ccCccccCCceeeEEeecCCCceEEEEecCCCeEEEE
Q psy3710 313 SYLCVSSDHGTVHVFSVDEAQKINKQSSLASAS---FLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVI 382 (424)
Q Consensus 313 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 382 (424)
..||+|+.|.+|++||+......... .+.... -.+........+..+.....++..+.|.-..-.|++|
T Consensus 632 ~vLasgg~DnsV~lWD~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 632 NVLASGGADNSVRLWDLTKVIELLNL-GHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred CEEEecCCCCeEEEEEchhhcccccc-cccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 99999999999999998764433100 000000 0111112233444566666777777777655444443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=250.50 Aligned_cols=280 Identities=22% Similarity=0.345 Sum_probs=238.5
Q ss_pred cccccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCe
Q psy3710 3 LGTSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNR 81 (424)
Q Consensus 3 ~~~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 81 (424)
+.++.+|.++|++++|+|++++|++++.++ +++|+..+.+.......|...+..+.|.++++.+++++ .|+.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~~~~ 74 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS-------SDKT 74 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEc-------CCCe
Confidence 356789999999999999999999999777 99999988876666666788888999999998888887 5899
Q ss_pred EEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEE
Q psy3710 82 VMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLA 157 (424)
Q Consensus 82 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (424)
+++|++.+++.+..+. +...+.++.|++++.++++ ++.+.+|++. ..+....+..+. ..+.++.++|++.+++
T Consensus 75 i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~--~~i~~~~~~~~~~~l~ 151 (289)
T cd00200 75 IRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-TGKCLTTLRGHT--DWVNSVAFSPDGTFVA 151 (289)
T ss_pred EEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC-CcEEEEEeccCC--CcEEEEEEcCcCCEEE
Confidence 9999999888887777 6779999999998766654 8899999996 667777776555 4488899999988888
Q ss_pred EeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEec---ceeeeeec
Q psy3710 158 FPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR---GLCVLCPN 234 (424)
Q Consensus 158 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~---~~~~~~~~ 234 (424)
+ ++.++.|++||++.. +....+..|...+.++.|+|+++.+++++.++. |++||+++++.+..+.. .+..++++
T Consensus 152 ~-~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 228 (289)
T cd00200 152 S-SSQDGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRGHENGVNSVAFS 228 (289)
T ss_pred E-EcCCCcEEEEEcccc-ccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCCCceecchhhcCCceEEEEEc
Confidence 7 777999999999875 667778889999999999999999999999999 99999998888777743 46778888
Q ss_pred CCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEE
Q psy3710 235 SNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298 (424)
Q Consensus 235 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd 298 (424)
++ ..++++++.+|.|++||+.+++ ....+..|...+.+++|+|++++|++++.|+. +++|+
T Consensus 229 ~~-~~~~~~~~~~~~i~i~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~iw~ 289 (289)
T cd00200 229 PD-GYLLASGSEDGTIRVWDLRTGE-CVQTLSGHTNSVTSLAWSPDGKRLASGSADGT-IRIWD 289 (289)
T ss_pred CC-CcEEEEEcCCCcEEEEEcCCce-eEEEccccCCcEEEEEECCCCCEEEEecCCCe-EEecC
Confidence 88 5555657789999999998755 34556688999999999999999999999999 99996
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=233.88 Aligned_cols=311 Identities=17% Similarity=0.200 Sum_probs=248.5
Q ss_pred cccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEE
Q psy3710 46 RQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIK 121 (424)
Q Consensus 46 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~ 121 (424)
.+..|..++.+++..|+.+..++.+ .|..-.+|+..+|+...++. |+..|.++.|+.++.++++ +|.|+
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGG-------gDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGG-------GDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVL 131 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecC-------CCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEE
Confidence 3556899999999999555555544 37899999999999888888 9999999999999999998 89999
Q ss_pred EEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEE
Q psy3710 122 VYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLA 201 (424)
Q Consensus 122 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 201 (424)
||+.. ++.....+.... ..+.=+.|+|-+..|++ |+.||.+.+|.+.+. ...+.+.+|+.++++=.|.|+|+.++
T Consensus 132 v~~~s-tg~~~~~~~~e~--~dieWl~WHp~a~illA-G~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~ 206 (399)
T KOG0296|consen 132 VFKVS-TGGEQWKLDQEV--EDIEWLKWHPRAHILLA-GSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKRIL 206 (399)
T ss_pred EEEcc-cCceEEEeeccc--CceEEEEecccccEEEe-ecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCCCceEE
Confidence 99997 666666654222 33667889999999998 999999999999986 67788999999999999999999999
Q ss_pred EEecCCcEEEEEECCCcceeeEEecc----eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCC-------CeeeccCCC
Q psy3710 202 TASYKGTLIRVFDTGSGQKLNELRRG----LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERP-------PLDIAAHEA 270 (424)
Q Consensus 202 ~~~~d~~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~ 270 (424)
++..||+ |++||..+++++..+... ...+.++..+..++ .|+.++.+++-+..+++.. ......+..
T Consensus 207 tgy~dgt-i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~-~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~ 284 (399)
T KOG0296|consen 207 TGYDDGT-IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLT-KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEE 284 (399)
T ss_pred EEecCce-EEEEecCCCceeEEecccccCcCCccccccccceeE-eccCCccEEEEccccceEEEecCCCCccccccchh
Confidence 9999999 999999999999887732 34444444444433 4777777766666554421 111124555
Q ss_pred CeEEEEE---cCCCCEEEEEeCCCcEEEEEECCCCceeeee-----------ccCCcEEEEEeCCCcEEEEEcccccccc
Q psy3710 271 PLSCIAL---NQTGTRLATASYKGTLIRVFDTGSGQKLNEL-----------RRDSSYLCVSSDHGTVHVFSVDEAQKIN 336 (424)
Q Consensus 271 ~v~~~~~---~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-----------~~~~~~l~~~~~d~~i~iw~~~~~~~~~ 336 (424)
.+.++.+ +..-.+.|+|+-||+ |.|||+.+.+....+ -+ ..+|++++.+|.|+.||.++|+++.
T Consensus 285 ~~esve~~~~ss~lpL~A~G~vdG~-i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~ 362 (399)
T KOG0296|consen 285 LDESVESIPSSSKLPLAACGSVDGT-IAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKF 362 (399)
T ss_pred hhhhhhhcccccccchhhcccccce-EEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEE
Confidence 5555554 446678999999999 999999887665543 23 5899999999999999999998743
Q ss_pred ccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 337 KQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
.+..|...|..++++|+.++++++|.|++.+||++.
T Consensus 363 ----------------------~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 363 ----------------------TYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ----------------------EEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 366788889999999999999999999999999874
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=236.76 Aligned_cols=278 Identities=15% Similarity=0.200 Sum_probs=248.3
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEE
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMI 84 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 84 (424)
+.+|..+|+.+-|.|+-...++++++. |++||..+++.......|...+..+.+...|+++++++ .|-.+++
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcS-------sDl~~~L 176 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCS-------SDLSAKL 176 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecC-------Cccchhh
Confidence 788999999999999999999999888 99999999999777888899999999999999999999 5777999
Q ss_pred EECCC-CcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEe
Q psy3710 85 WDDLK-KQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFP 159 (424)
Q Consensus 85 wd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (424)
||..+ .++++... |...|.++.|-|.+.++.+ |.+|+.|++. ++..+.++.+|... +..+.++.||..+++
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~-tg~cv~t~~~h~ew--vr~v~v~~DGti~As- 252 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD-TGYCVKTFPGHSEW--VRMVRVNQDGTIIAS- 252 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecc-cceeEEeccCchHh--EEEEEecCCeeEEEe-
Confidence 99876 44444444 8889999999999988876 9999999997 89999999998864 777888999999998
Q ss_pred eccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccC---------------CCEEEEEecCCcEEEEEECCCcceeeEE
Q psy3710 160 GRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT---------------GTRLATASYKGTLIRVFDTGSGQKLNEL 224 (424)
Q Consensus 160 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~d~~~i~iwd~~~~~~~~~~ 224 (424)
++.|.++++|-+.+. +....++.|..+|.+++|.|. +.++.+++.|++ |++||+.++.++.++
T Consensus 253 ~s~dqtl~vW~~~t~-~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik~wdv~tg~cL~tL 330 (406)
T KOG0295|consen 253 CSNDQTLRVWVVATK-QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT-IKIWDVSTGMCLFTL 330 (406)
T ss_pred cCCCceEEEEEeccc-hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce-EEEEeccCCeEEEEE
Confidence 999999999999986 677889999999999999773 258999999999 999999999999999
Q ss_pred ecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEC
Q psy3710 225 RRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDT 299 (424)
Q Consensus 225 ~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~ 299 (424)
.++ +..++++|.|++++- +.+|+++++||+++.++ ...+..|..-++++.|+.+-.++++|+-|.+ +++|..
T Consensus 331 ~ghdnwVr~~af~p~Gkyi~S-caDDktlrvwdl~~~~c-mk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt-~KvwEc 405 (406)
T KOG0295|consen 331 VGHDNWVRGVAFSPGGKYILS-CADDKTLRVWDLKNLQC-MKTLEAHEHFVTSLDFHKTAPYVVTGSVDQT-VKVWEC 405 (406)
T ss_pred ecccceeeeeEEcCCCeEEEE-EecCCcEEEEEecccee-eeccCCCcceeEEEecCCCCceEEeccccce-eeeeec
Confidence 987 778899998887765 88999999999999775 4556699999999999999999999999999 999974
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=236.36 Aligned_cols=268 Identities=16% Similarity=0.233 Sum_probs=234.8
Q ss_pred EeecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCC
Q psy3710 96 LEFNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLA 172 (424)
Q Consensus 96 ~~~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~ 172 (424)
..+..+|..+.|+|+..++++ |++|++||.. +++....+++|... +..++++..|+++++ ++.|-.+.+||..
T Consensus 105 ~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~-tg~~e~~LrGHt~s--v~di~~~a~Gk~l~t-cSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTE-TGELERSLRGHTDS--VFDISFDASGKYLAT-CSSDLSAKLWDFD 180 (406)
T ss_pred hccccceeeeeeccCceEEEEecCCceEEEEEcc-chhhhhhhhccccc--eeEEEEecCccEEEe-cCCccchhheeHH
Confidence 347889999999999876665 8999999997 88889999999865 888999999999998 9999889999999
Q ss_pred CCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEeecCCe
Q psy3710 173 DPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGRKSGH 249 (424)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~ 249 (424)
+..+.++...+|...|.++.|-|.|.++++++.|.+ |+.|++.++.++.+++++ +..+....+|..++ +++.|.+
T Consensus 181 ~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t-ik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~A-s~s~dqt 258 (406)
T KOG0295|consen 181 TFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNT-IKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIA-SCSNDQT 258 (406)
T ss_pred HHHHHHHHhcCcccceeeEEEEecCCeeeecccccc-eeEEecccceeEEeccCchHhEEEEEecCCeeEEE-ecCCCce
Confidence 865777888899999999999999999999999999 999999999999999988 56677777766554 5999999
Q ss_pred EEEEeCCCCCCCCeeeccCCCCeEEEEEcCC---------------CCEEEEEeCCCcEEEEEECCCCceeee-------
Q psy3710 250 VHLVDLADPERPPLDIAAHEAPLSCIALNQT---------------GTRLATASYKGTLIRVFDTGSGQKLNE------- 307 (424)
Q Consensus 250 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~d~~~i~iwd~~~~~~~~~------- 307 (424)
+++|-+.+.+. ...+..|+.+|.+++|.|. ++++.+++.|++ |++||+.++.++.+
T Consensus 259 l~vW~~~t~~~-k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik~wdv~tg~cL~tL~ghdnw 336 (406)
T KOG0295|consen 259 LRVWVVATKQC-KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT-IKIWDVSTGMCLFTLVGHDNW 336 (406)
T ss_pred EEEEEeccchh-hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce-EEEEeccCCeEEEEEecccce
Confidence 99999998753 4566789999999999763 359999999999 99999999999986
Q ss_pred -----eccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEE
Q psy3710 308 -----LRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVI 382 (424)
Q Consensus 308 -----~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 382 (424)
|+|.|+||+++.+|+++++||+++++++....+ |.+-++++.|..+-.|+++|
T Consensus 337 Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a----------------------h~hfvt~lDfh~~~p~VvTG 394 (406)
T KOG0295|consen 337 VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA----------------------HEHFVTSLDFHKTAPYVVTG 394 (406)
T ss_pred eeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC----------------------CcceeEEEecCCCCceEEec
Confidence 568999999999999999999999998766443 44557788999998999999
Q ss_pred eccCcEEEEEe
Q psy3710 383 CADGSYYKFMF 393 (424)
Q Consensus 383 ~~dg~v~~~~~ 393 (424)
+-|..+++|.-
T Consensus 395 sVdqt~KvwEc 405 (406)
T KOG0295|consen 395 SVDQTVKVWEC 405 (406)
T ss_pred cccceeeeeec
Confidence 99999999973
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=248.88 Aligned_cols=360 Identities=14% Similarity=0.151 Sum_probs=244.0
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe---EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeE
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG---FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~---i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 82 (424)
+..|..+++|++|||+|+|+|+|-.+. +++|++.....+....-|+-.+++++|+|.++++++++.. .|-.|
T Consensus 74 vnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQ-----HDMIV 148 (1080)
T KOG1408|consen 74 VNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQ-----HDMIV 148 (1080)
T ss_pred ecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccc-----cceEE
Confidence 456788999999999999999986444 9999999888777677789999999999999999999976 48889
Q ss_pred EEEECCCCcEEEEEeecCCeEEEEecCCceEEEe--eccEEEEeecCCCce-----------------------------
Q psy3710 83 MIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQ----------------------------- 131 (424)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~----------------------------- 131 (424)
.+||++.......-+....|.+++|+.|+.++.+ ...|++|.+....+.
T Consensus 149 nv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~g 228 (1080)
T KOG1408|consen 149 NVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVG 228 (1080)
T ss_pred EhhhhhhcccccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCc
Confidence 9998876555544445566777777777766555 456666665321100
Q ss_pred ----------------------------------------------------------------eEEEeeCC--------
Q psy3710 132 ----------------------------------------------------------------LHVFETNP-------- 139 (424)
Q Consensus 132 ----------------------------------------------------------------~~~~~~~~-------- 139 (424)
..++....
T Consensus 229 icAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~ 308 (1080)
T KOG1408|consen 229 ICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTAN 308 (1080)
T ss_pred ccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhh
Confidence 00000000
Q ss_pred ----C----------CCeeEEEeecCCCCe--------------------------------------------------
Q psy3710 140 ----N----------PKGLCVLCPNSNNSL-------------------------------------------------- 155 (424)
Q Consensus 140 ----~----------~~~~~~~~~~~~~~~-------------------------------------------------- 155 (424)
. -....++.|++....
T Consensus 309 ~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~a 388 (1080)
T KOG1408|consen 309 LSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAA 388 (1080)
T ss_pred cccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccc
Confidence 0 000112222222211
Q ss_pred ------EEEeeccCCeEEEEeCCCCC--CC----------Cc------------------------ccccccCCeEEEEE
Q psy3710 156 ------LAFPGRKSGHVHLVDLADPE--RP----------PL------------------------DIAAHEAPLSCIAL 193 (424)
Q Consensus 156 ------l~~~~~~dg~i~i~d~~~~~--~~----------~~------------------------~~~~~~~~v~~~~~ 193 (424)
+++ ++.|++|++|++.... .. .+ ..-.....+++++.
T Consensus 389 clp~~cF~T-CSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~v 467 (1080)
T KOG1408|consen 389 CLPRGCFTT-CSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAV 467 (1080)
T ss_pred cCCccceeE-ecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEE
Confidence 222 6677777777766410 00 00 00012345899999
Q ss_pred ccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecC--CCCeEEEEeecCCeEEEEeCCCCCCCCeeeccC
Q psy3710 194 NQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNS--NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAH 268 (424)
Q Consensus 194 ~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~ 268 (424)
+|+|++|++|...|. +++|++...+....++.| +-++.++. -+..++++++.|.-|++||......+..++.+|
T Consensus 468 Sp~gqhLAsGDr~Gn-lrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~H 546 (1080)
T KOG1408|consen 468 SPDGQHLASGDRGGN-LRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGH 546 (1080)
T ss_pred CCCcceecccCccCc-eEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccc
Confidence 999999999999999 999999888777777665 33343432 255788889999999999998776666666676
Q ss_pred CCCeEEEEEc-------------------------------------------------CCCCEEEEEeCCCcEEEEEEC
Q psy3710 269 EAPLSCIALN-------------------------------------------------QTGTRLATASYKGTLIRVFDT 299 (424)
Q Consensus 269 ~~~v~~~~~~-------------------------------------------------~~~~~l~~~~~d~~~i~iwd~ 299 (424)
...|+++.|. |..+++++++.|.. |+|||+
T Consensus 547 SssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrn-irif~i 625 (1080)
T KOG1408|consen 547 SSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRN-IRIFDI 625 (1080)
T ss_pred ccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccc-eEEEec
Confidence 6666655554 44445555666666 666666
Q ss_pred CCCceeeeec---------------cCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecC
Q psy3710 300 GSGQKLNELR---------------RDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPS 364 (424)
Q Consensus 300 ~~~~~~~~~~---------------~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (424)
++|+..+.|+ |.|-|+++...|.++.++|.-+|+++.+ ..+|.
T Consensus 626 ~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~----------------------m~GHs 683 (1080)
T KOG1408|consen 626 ESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ----------------------MTGHS 683 (1080)
T ss_pred cccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh----------------------hcCcc
Confidence 6665555543 4455666666666666666666655433 45677
Q ss_pred CCceEEEEecCCCeEEEEeccCcEEEEEecC
Q psy3710 365 DPPCICAFGADSNSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 365 ~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~ 395 (424)
+.|+.+.|.+|-+.|++++.||.|++|.+..
T Consensus 684 E~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 684 EAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hheeeeeecccchhheeecCCceEEEEECch
Confidence 8899999999999999999999999999974
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=242.41 Aligned_cols=273 Identities=18% Similarity=0.202 Sum_probs=228.5
Q ss_pred ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCC
Q psy3710 98 FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADP 174 (424)
Q Consensus 98 ~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~ 174 (424)
.+.+|..+.|.|+|+.+.+ .|.+.+|+.. .......++.|+.+ +.++.|++++.++++ |+.+|.|++|+...
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~-~fnFEtilQaHDs~--Vr~m~ws~~g~wmiS-gD~gG~iKyWqpnm- 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGT-SFNFETILQAHDSP--VRTMKWSHNGTWMIS-GDKGGMIKYWQPNM- 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCc-eeeHHHHhhhhccc--ceeEEEccCCCEEEE-cCCCceEEecccch-
Confidence 3568999999999865554 8999999973 33333445667755 889999999999998 99999999999987
Q ss_pred CCCCccccccc-CCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEeecCCeE
Q psy3710 175 ERPPLDIAAHE-APLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGRKSGHV 250 (424)
Q Consensus 175 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i 250 (424)
..++.+.+|. ..|++++|+|+...+++++.|++ |+|||....+....+.++ +.++.|+|....++. |+.|+.|
T Consensus 170 -nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~-ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLias-gskDnlV 246 (464)
T KOG0284|consen 170 -NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGT-IKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIAS-GSKDNLV 246 (464)
T ss_pred -hhhHHhhHhhhhhhheeccCCCCceeEEecCCCe-EEEEeccCCchhheeccCCCCcceeccCCccceeEE-ccCCcee
Confidence 5666666665 89999999999999999999999 999999998888888776 788999998877665 8999999
Q ss_pred EEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeecc-------------CCcEEEE
Q psy3710 251 HLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR-------------DSSYLCV 317 (424)
Q Consensus 251 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-------------~~~~l~~ 317 (424)
++||.+++.+ +.++.+|+..|..+.|+|++++|+++|.|.. ++++|+++-+.+.+++. ...+|.+
T Consensus 247 KlWDprSg~c-l~tlh~HKntVl~~~f~~n~N~Llt~skD~~-~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lfts 324 (464)
T KOG0284|consen 247 KLWDPRSGSC-LATLHGHKNTVLAVKFNPNGNWLLTGSKDQS-CKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTS 324 (464)
T ss_pred EeecCCCcch-hhhhhhccceEEEEEEcCCCCeeEEccCCce-EEEEehhHhHHHHHhhcchhhheeeccccccccceee
Confidence 9999999885 5667799999999999999999999999999 99999998777766542 4568999
Q ss_pred EeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCCc
Q psy3710 318 SSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKG 397 (424)
Q Consensus 318 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~ 397 (424)
|+.||.|..|.+...+++..++ ..|.+.|++++|+|-|..|++|+.|.++++|.-...+
T Consensus 325 gg~Dgsvvh~~v~~~~p~~~i~---------------------~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 325 GGSDGSVVHWVVGLEEPLGEIP---------------------PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred ccCCCceEEEeccccccccCCC---------------------cccccceeeeeccccceeEeecCCCcceeeeccCCCC
Confidence 9999999999998544433221 2466789999999999999999999999999877655
Q ss_pred ceee
Q psy3710 398 ECWR 401 (424)
Q Consensus 398 ~~~~ 401 (424)
+...
T Consensus 384 d~~~ 387 (464)
T KOG0284|consen 384 DKNA 387 (464)
T ss_pred Cccc
Confidence 5443
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=218.74 Aligned_cols=283 Identities=17% Similarity=0.185 Sum_probs=225.9
Q ss_pred ccccccccCCceEEEEECCC-CCeeEeecCCe-EEEEeCCcCc---cccc-ccccCCCeeeEEEeccCceEEEEeCCcCC
Q psy3710 2 NLGTSSTYKNGLLYAGFNQD-QGCFACGMEDG-FRIYNCDPLK---EKER-QDFTDGGLGHVEMLFRCNYLALVGGGTHP 75 (424)
Q Consensus 2 ~~~~l~~h~~~V~~~~~s~~-g~~la~g~~~~-i~iw~~~~~~---~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 75 (424)
....+++|.+.|..++|+|- |..||+++.+. |+||+...+. ++.. -..|...|..++|+|.+++|++++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS----- 80 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS----- 80 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee-----
Confidence 34568999999999999999 89999888888 9999987532 2211 345889999999999999999999
Q ss_pred CcCCCeEEEEECCCC--cEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecC--CCceeEEEeeCCCCCeeEEE
Q psy3710 76 KYPNNRVMIWDDLKK--QVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQ--CPQQLHVFETNPNPKGLCVL 147 (424)
Q Consensus 76 ~~~d~~i~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~--~~~~~~~~~~~~~~~~~~~~ 147 (424)
.|.++.||.-..+ +++..++ |...|.+++|+++|.++|+ |..|-||.+.. .......++.|.+. +-.+
T Consensus 81 --FD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD--VK~V 156 (312)
T KOG0645|consen 81 --FDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD--VKHV 156 (312)
T ss_pred --ccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc--ccEE
Confidence 7999999986544 5667777 8999999999999999997 89999999963 23556677777755 6667
Q ss_pred eecCCCCeEEEeeccCCeEEEEeCCCC--CCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe
Q psy3710 148 CPNSNNSLLAFPGRKSGHVHLVDLADP--ERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR 225 (424)
Q Consensus 148 ~~~~~~~~l~~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 225 (424)
.|+|...+|++ ++.|.+|++|+-... -....++.+|...|.+++|+|.|..|++++.|++ ++||...+.- .....
T Consensus 157 ~WHPt~dlL~S-~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~~~-~~~~s 233 (312)
T KOG0645|consen 157 IWHPTEDLLFS-CSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYTDL-SGMHS 233 (312)
T ss_pred EEcCCcceeEE-eccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeeccCc-chhcc
Confidence 89998888988 999999999987632 1457789999999999999999999999999999 9999865321 11122
Q ss_pred cceeeeeecCCCCeEEEEeecCCeEEEEeCCCC-CCC-----CeeeccCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEE
Q psy3710 226 RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADP-ERP-----PLDIAAHEAPLSCIALNQT-GTRLATASYKGTLIRVFD 298 (424)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~-~~~-----~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd 298 (424)
..+..+.+. .-++++++.|+.|++|..... ..+ ...-..|...|++++|.|. .++|++++.||. |++|.
T Consensus 234 r~~Y~v~W~---~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~-v~~W~ 309 (312)
T KOG0645|consen 234 RALYDVPWD---NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGI-VNFWE 309 (312)
T ss_pred cceEeeeec---ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCce-EEEEE
Confidence 334445555 456777999999999987643 111 1233479999999999994 679999999999 99998
Q ss_pred CC
Q psy3710 299 TG 300 (424)
Q Consensus 299 ~~ 300 (424)
+.
T Consensus 310 l~ 311 (312)
T KOG0645|consen 310 LE 311 (312)
T ss_pred ec
Confidence 74
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=246.66 Aligned_cols=365 Identities=15% Similarity=0.203 Sum_probs=274.9
Q ss_pred CCCeeEeecCCe-EEEEeCCcCc-cc----ccccccCCCeeeEEEeccC--ceEEEEeCCcCCCcCCCeEEEEECCCCcE
Q psy3710 21 DQGCFACGMEDG-FRIYNCDPLK-EK----ERQDFTDGGLGHVEMLFRC--NYLALVGGGTHPKYPNNRVMIWDDLKKQV 92 (424)
Q Consensus 21 ~g~~la~g~~~~-i~iw~~~~~~-~~----~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~~~~~~d~~i~iwd~~~~~~ 92 (424)
-|..+.++..++ +.||+....+ .. .........|+++. .|+. +.++..+ .+|.+.+||+++++.
T Consensus 123 fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs-------~~G~lql~Nvrt~K~ 194 (910)
T KOG1539|consen 123 FGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGS-------SQGRLQLWNVRTGKV 194 (910)
T ss_pred ecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEee-------cCCcEEEEEeccCcE
Confidence 355555555555 8888876641 11 11111122243332 1221 4455555 479999999999999
Q ss_pred EEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEE
Q psy3710 93 VICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHL 168 (424)
Q Consensus 93 ~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i 168 (424)
+.+++ +...|+++.-+|--..++. +|+|.+++++ ..+.+.+++... ..+..++|..||+.+.++|+..|.+.+
T Consensus 195 v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK-~dkil~sFk~d~--g~VtslSFrtDG~p~las~~~~G~m~~ 271 (910)
T KOG1539|consen 195 VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLK-FDKILMSFKQDW--GRVTSLSFRTDGNPLLASGRSNGDMAF 271 (910)
T ss_pred EEEecccccceeEeccCCcceEEEEeccCceEEEEEcc-cCcEEEEEEccc--cceeEEEeccCCCeeEEeccCCceEEE
Confidence 99999 6899999999998877775 9999999997 888888888764 448899999999998887999999999
Q ss_pred EeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcc-----------------------------
Q psy3710 169 VDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ----------------------------- 219 (424)
Q Consensus 169 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~----------------------------- 219 (424)
||++..+........|.+.|....|.|....+++++.|.. +++|-..++.
T Consensus 272 wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnS-lk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~i 350 (910)
T KOG1539|consen 272 WDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNS-LKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFI 350 (910)
T ss_pred EEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCc-eeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEE
Confidence 9999863333334478888888888888888888888887 7777443211
Q ss_pred ------------------------------------------------------------------------eee-----
Q psy3710 220 ------------------------------------------------------------------------KLN----- 222 (424)
Q Consensus 220 ------------------------------------------------------------------------~~~----- 222 (424)
...
T Consensus 351 lsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~ 430 (910)
T KOG1539|consen 351 LSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFR 430 (910)
T ss_pred EecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEecc
Confidence 000
Q ss_pred -------EE--------ecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCee--eccCCCCeEEEEEcCCCCEEE
Q psy3710 223 -------EL--------RRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD--IAAHEAPLSCIALNQTGTRLA 285 (424)
Q Consensus 223 -------~~--------~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~ 285 (424)
.+ .....+++.++.|+..++ |...|.|-+|+++++-..... -+.|+.+|++++.+.-++.++
T Consensus 431 n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~I-G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~v 509 (910)
T KOG1539|consen 431 NKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFI-GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLV 509 (910)
T ss_pred CcccccEEecCccccccCcceEEEEEeccCceEEE-eccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEE
Confidence 00 011345566777776666 999999999999987632221 258999999999999999999
Q ss_pred EEeCCCcEEEEEECCCCceeeeec-----------cCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCC
Q psy3710 286 TASYKGTLIRVFDTGSGQKLNELR-----------RDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSS 354 (424)
Q Consensus 286 ~~~~d~~~i~iwd~~~~~~~~~~~-----------~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (424)
+++.+|- +++||......+.+++ .....++.+..|-.|+++|+.+.+.++.
T Consensus 510 sa~~~Gi-lkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~----------------- 571 (910)
T KOG1539|consen 510 SAGADGI-LKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVRE----------------- 571 (910)
T ss_pred EccCcce-EEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHH-----------------
Confidence 9999999 9999999988777654 3556788889999999999998655443
Q ss_pred ceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCCcceeee----eehhhheecCCCceeeEEEe
Q psy3710 355 WSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWRD----VYIQFLEMTNDSNLLSCIEI 422 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~~~~----~~~~~~~~~~d~~~l~~~~~ 422 (424)
|+.|...+++++|||||++|++++.|++|++||+. ++.++.. .-...+.++|.|+|||+..+
T Consensus 572 -----f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp-t~~lID~~~vd~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 572 -----FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP-TGTLIDGLLVDSPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred -----hhccccceeeeEeCCCCcEEEEeecCCcEEEEecc-CcceeeeEecCCcceeeEECCCCCEEEEEEe
Confidence 66788899999999999999999999999999998 6665553 33457889999999999864
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=231.67 Aligned_cols=279 Identities=16% Similarity=0.259 Sum_probs=238.4
Q ss_pred ccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEE
Q psy3710 47 QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKV 122 (424)
Q Consensus 47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v 122 (424)
...|.+-|.++++.|.+.++++.+ .|++++|||+.+|+...++. |-..|..+++++-.-++++ |+.|+.
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs-------~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGS-------ADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecC-------CCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 445889999999999999988877 68999999999999999999 8999999999999888876 899999
Q ss_pred EeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEE
Q psy3710 123 YTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLAT 202 (424)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 202 (424)
||+. ..+.++.+.+|- .++.+++.+|.-..|++ |+.|..+++||+++. ..+..+.+|..+|.++.+.|....+++
T Consensus 220 wDLe-~nkvIR~YhGHl--S~V~~L~lhPTldvl~t-~grDst~RvWDiRtr-~~V~~l~GH~~~V~~V~~~~~dpqvit 294 (460)
T KOG0285|consen 220 WDLE-YNKVIRHYHGHL--SGVYCLDLHPTLDVLVT-GGRDSTIRVWDIRTR-ASVHVLSGHTNPVASVMCQPTDPQVIT 294 (460)
T ss_pred Eech-hhhhHHHhcccc--ceeEEEeccccceeEEe-cCCcceEEEeeeccc-ceEEEecCCCCcceeEEeecCCCceEE
Confidence 9997 778888888777 55889999999999998 999999999999996 788899999999999999998889999
Q ss_pred EecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCC
Q psy3710 203 ASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT 282 (424)
Q Consensus 203 ~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 282 (424)
|+.|++ |++||++.++....+. .|+..+.+++.+|...
T Consensus 295 ~S~D~t-vrlWDl~agkt~~tlt-----------------------------------------~hkksvral~lhP~e~ 332 (460)
T KOG0285|consen 295 GSHDST-VRLWDLRAGKTMITLT-----------------------------------------HHKKSVRALCLHPKEN 332 (460)
T ss_pred ecCCce-EEEeeeccCceeEeee-----------------------------------------cccceeeEEecCCchh
Confidence 999999 9999999887655443 7888999999999999
Q ss_pred EEEEEeCCCcEEEEEECCCCceeeeecc-----------CCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccc
Q psy3710 283 RLATASYKGTLIRVFDTGSGQKLNELRR-----------DSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYF 351 (424)
Q Consensus 283 ~l~~~~~d~~~i~iwd~~~~~~~~~~~~-----------~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 351 (424)
.+|+++.|. |+-|++..|..+..++. ...++++|++.|.+.+||.++|...++..... .|...
T Consensus 333 ~fASas~dn--ik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~v----qpGSl 406 (460)
T KOG0285|consen 333 LFASASPDN--IKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIV----QPGSL 406 (460)
T ss_pred hhhccCCcc--ceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccc----cCCcc
Confidence 999999998 89999999887776553 34588999999999999999987665432211 11100
Q ss_pred cCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecC
Q psy3710 352 SSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~ 395 (424)
.....|...+|...|..|++|..|.+|++|.=++
T Consensus 407 ----------~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 407 ----------ESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ----------ccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 0123577889999999999999999999998764
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=254.67 Aligned_cols=278 Identities=19% Similarity=0.277 Sum_probs=237.0
Q ss_pred cCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCc--ccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEE
Q psy3710 9 YKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLK--EKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIW 85 (424)
Q Consensus 9 h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iw 85 (424)
|...|.++.|+++|+.+++++.++ +++|+....+ .......|...|..++|+|+++++++++ .|++|+||
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s-------~D~tiriw 230 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGS-------DDKTLRIW 230 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEec-------CCceEEEe
Confidence 478999999999999999998888 9999997777 4444566889999999999999998888 68999999
Q ss_pred EC-CCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEee
Q psy3710 86 DD-LKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPG 160 (424)
Q Consensus 86 d~-~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (424)
|+ ..+..++++. |...|++++|+|++..+++ |++|++||++ ++++...+..|..+ +.++++++++.+|++ +
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~-~~~~~~~l~~hs~~--is~~~f~~d~~~l~s-~ 306 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR-TGECVRKLKGHSDG--ISGLAFSPDGNLLVS-A 306 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc-CCeEEEeeeccCCc--eEEEEECCCCCEEEE-c
Confidence 99 5568889887 9999999999999977776 9999999997 78999999999865 888999999999998 8
Q ss_pred ccCCeEEEEeCCCCCC-CCcccccccCC--eEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceee-eee---
Q psy3710 161 RKSGHVHLVDLADPER-PPLDIAAHEAP--LSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCV-LCP--- 233 (424)
Q Consensus 161 ~~dg~i~i~d~~~~~~-~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~-~~~--- 233 (424)
+.|+.|++||+.++.. ....+..+... ++++.|+|+++++++++.|+. +++||+..++....+..+... .++
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~-~~~w~l~~~~~~~~~~~~~~~~~~~~~~ 385 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT-LKLWDLRSGKSVGTYTGHSNLVRCIFSP 385 (456)
T ss_pred CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-EEEEEccCCcceeeecccCCcceeEecc
Confidence 9999999999998732 34566666554 999999999999999999999 999999999988888766332 111
Q ss_pred -cCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccC-CCCeEEEEEcCCCCEEEEEe--CCCcEEEEEECC
Q psy3710 234 -NSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAH-EAPLSCIALNQTGTRLATAS--YKGTLIRVFDTG 300 (424)
Q Consensus 234 -~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~d~~~i~iwd~~ 300 (424)
...+..++++|+.|+.|++||+.+.. ....+.+| ...+..++++|..+++++++ .|+. +++|...
T Consensus 386 ~~~~~~~~i~sg~~d~~v~~~~~~s~~-~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~-~~~w~~~ 454 (456)
T KOG0266|consen 386 TLSTGGKLIYSGSEDGSVYVWDSSSGG-ILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGL-IRLWKYD 454 (456)
T ss_pred cccCCCCeEEEEeCCceEEEEeCCccc-hhhhhcCCCCCceeccccCCCcCeeeecCcCCCce-EEEecCC
Confidence 23355666679999999999999855 45666788 89999999999999999998 6888 9999754
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=221.70 Aligned_cols=249 Identities=16% Similarity=0.163 Sum_probs=205.8
Q ss_pred cccccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCe
Q psy3710 3 LGTSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNR 81 (424)
Q Consensus 3 ~~~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 81 (424)
+.++.||+..|..++.++||++..+++.|+ +++||+.+++...++..|...|.++++++++..+++.+ .|++
T Consensus 56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGS-------rDkT 128 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGS-------RDKT 128 (315)
T ss_pred eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCC-------Ccce
Confidence 356899999999999999999999999999 99999999988888889999999999999999998887 6999
Q ss_pred EEEEECCCCcEEEEEe-e--cCCeEEEEecCC--ceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCC
Q psy3710 82 VMIWDDLKKQVVICLE-F--NAPVKGVRLRRD--KIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNN 153 (424)
Q Consensus 82 i~iwd~~~~~~~~~~~-~--~~~v~~~~~~~~--~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (424)
|++||.. +.+..++. . .+.|.++.|+|+ ..++++ |+++++||++ +.+....+.+|.+. +..+.++|||
T Consensus 129 iklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~-~~~l~~~~~gh~~~--v~t~~vSpDG 204 (315)
T KOG0279|consen 129 IKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR-NCQLRTTFIGHSGY--VNTVTVSPDG 204 (315)
T ss_pred eeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC-Ccchhhcccccccc--EEEEEECCCC
Confidence 9999984 55555554 2 788999999998 455554 9999999997 77888888887744 8889999999
Q ss_pred CeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeee
Q psy3710 154 SLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCP 233 (424)
Q Consensus 154 ~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~ 233 (424)
...++ |+.||.+.+||++.+ +.+. ..+|...|.+++|+|+.-.|+.+ .+.. |+|||++++.++.+++....
T Consensus 205 slcas-Ggkdg~~~LwdL~~~-k~ly-sl~a~~~v~sl~fspnrywL~~a-t~~s-IkIwdl~~~~~v~~l~~d~~---- 275 (315)
T KOG0279|consen 205 SLCAS-GGKDGEAMLWDLNEG-KNLY-SLEAFDIVNSLCFSPNRYWLCAA-TATS-IKIWDLESKAVVEELKLDGI---- 275 (315)
T ss_pred CEEec-CCCCceEEEEEccCC-ceeE-eccCCCeEeeEEecCCceeEeec-cCCc-eEEEeccchhhhhhcccccc----
Confidence 99998 999999999999986 4444 44688999999999986555554 4555 99999999998887764310
Q ss_pred cCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 234 NSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 234 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
|. ..+.......+++|++||..|++|-.|+. |++|.+.
T Consensus 276 ----------g~------------------s~~~~~~~clslaws~dG~tLf~g~td~~-irv~qv~ 313 (315)
T KOG0279|consen 276 ----------GP------------------SSKAGDPICLSLAWSADGQTLFAGYTDNV-IRVWQVA 313 (315)
T ss_pred ----------cc------------------ccccCCcEEEEEEEcCCCcEEEeeecCCc-EEEEEee
Confidence 00 01123344577899999999999999999 9999875
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=215.22 Aligned_cols=280 Identities=15% Similarity=0.217 Sum_probs=217.5
Q ss_pred EEEEe-ecCCeEEEEecCC-ceEEEe---eccEEEEeecCC--CceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCe
Q psy3710 93 VICLE-FNAPVKGVRLRRD-KIVVVL---EGLIKVYTFIQC--PQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGH 165 (424)
Q Consensus 93 ~~~~~-~~~~v~~~~~~~~-~~~~~~---~~~i~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~ 165 (424)
++.++ |.+.+..++|+|- |.++++ |..|++|+.... -.+...+.. .+...+..++|+|.|++|++ |+.|.+
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~-~hkrsVRsvAwsp~g~~La~-aSFD~t 84 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD-GHKRSVRSVAWSPHGRYLAS-ASFDAT 84 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccc-cchheeeeeeecCCCcEEEE-eeccce
Confidence 34444 7889999999999 787876 889999998621 122222322 34466899999999999998 999999
Q ss_pred EEEEeCCCC-CCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCc---ceeeEEecc---eeeeeecCCCC
Q psy3710 166 VHLVDLADP-ERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG---QKLNELRRG---LCVLCPNSNNS 238 (424)
Q Consensus 166 i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~---~~~~~~~~~---~~~~~~~~~~~ 238 (424)
+.||.-..+ .+.+..+.+|..+|.+++|+++|++|++++.|+. |-||.+..+ ++...++.| +..+.++|...
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKS-VWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKS-VWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED 163 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCe-EEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence 999986643 2456789999999999999999999999999999 999998744 344555544 77788888766
Q ss_pred eEEEEeecCCeEEEEeCCCCC--CCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCC------ceeeeecc
Q psy3710 239 LLAFPGRKSGHVHLVDLADPE--RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG------QKLNELRR 310 (424)
Q Consensus 239 ~~~~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~------~~~~~~~~ 310 (424)
.+ ++++.|++|++|+-..+. ....++.+|...|.+++|+|.|..|++++.|++ ++||...+. ..+..+.-
T Consensus 164 lL-~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~~~~~~~sr~~Y~v~W 241 (312)
T KOG0645|consen 164 LL-FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYTDLSGMHSRALYDVPW 241 (312)
T ss_pred ee-EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeeccCcchhcccceEeeee
Confidence 55 459999999999887422 346788899999999999999999999999999 999985432 22333333
Q ss_pred CCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCcee--eEEeecCCCceEEEEecC-CCeEEEEeccCc
Q psy3710 311 DSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSF--CKFQIPSDPPCICAFGAD-SNSIIVICADGS 387 (424)
Q Consensus 311 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~ 387 (424)
+...|++++.|+.|++|.-...-. ...|.+ .....|...|..+.|.|. .++|++|+.||.
T Consensus 242 ~~~~IaS~ggD~~i~lf~~s~~~d-----------------~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~ 304 (312)
T KOG0645|consen 242 DNGVIASGGGDDAIRLFKESDSPD-----------------EPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGI 304 (312)
T ss_pred cccceEeccCCCEEEEEEecCCCC-----------------CchHHHHHhhhcccccccceEEEcCCCCCceeecCCCce
Confidence 467899999999999998774211 011111 123456778999999994 779999999999
Q ss_pred EEEEEec
Q psy3710 388 YYKFMFN 394 (424)
Q Consensus 388 v~~~~~~ 394 (424)
|++|.+.
T Consensus 305 v~~W~l~ 311 (312)
T KOG0645|consen 305 VNFWELE 311 (312)
T ss_pred EEEEEec
Confidence 9999974
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=216.23 Aligned_cols=278 Identities=16% Similarity=0.207 Sum_probs=228.2
Q ss_pred cccccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCe
Q psy3710 3 LGTSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNR 81 (424)
Q Consensus 3 ~~~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 81 (424)
+..|..|+++|+++.|+-||+|..+++.+. |++|+...+..+..+..|...|...+.+.++..+++++ .|+.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~G-------gDk~ 82 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCG-------GDKA 82 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCC-------CCce
Confidence 345788999999999999999888655555 99999999999988999999999999999999998888 4799
Q ss_pred EEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecC-CCceeEEEeeCCCCCeeEEEeecCCCCeE
Q psy3710 82 VMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQ-CPQQLHVFETNPNPKGLCVLCPNSNNSLL 156 (424)
Q Consensus 82 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (424)
+.+||+++|+.++.+. |.+.|+.++|+.+...+++ |..+++||.+. ..++++.+..... ++.++..+ +..|
T Consensus 83 v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D--~V~Si~v~--~heI 158 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD--GVSSIDVA--EHEI 158 (307)
T ss_pred EEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC--ceeEEEec--ccEE
Confidence 9999999999999999 8999999999999988887 99999999963 3466777665553 35555543 5567
Q ss_pred EEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecce----eeee
Q psy3710 157 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGL----CVLC 232 (424)
Q Consensus 157 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~----~~~~ 232 (424)
+. |+.||+++.||++.+ ....- ....+|+++.|+++++..+.++.|++ +++.|-++|+.+..++++. ..-|
T Consensus 159 va-GS~DGtvRtydiR~G-~l~sD--y~g~pit~vs~s~d~nc~La~~l~st-lrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 159 VA-GSVDGTVRTYDIRKG-TLSSD--YFGHPITSVSFSKDGNCSLASSLDST-LRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred Ee-eccCCcEEEEEeecc-eeehh--hcCCcceeEEecCCCCEEEEeeccce-eeecccchhHHHHHhcccccceeeeee
Confidence 76 999999999999987 33333 33568999999999999999999999 9999999999999988773 3334
Q ss_pred ecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCC-eEEEEEcCCCCEEEEEeCCCcEEEEEEC
Q psy3710 233 PNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAP-LSCIALNQTGTRLATASYKGTLIRVFDT 299 (424)
Q Consensus 233 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~~i~iwd~ 299 (424)
........+++|++||.+++||+..... +..+..+... +.+++++|....|+++...+ +..|--
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~-~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~--~~~~~~ 298 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDETQ-ISKLSVVSTVIVTDLSCHPTMDDFITATGHG--DLFWYQ 298 (307)
T ss_pred eecccceeEEeccCCceEEEEEecccee-eeeeccCCceeEEeeecccCccceeEecCCc--eeceee
Confidence 4455566777899999999999998764 4445566666 89999999888888877666 566643
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=267.60 Aligned_cols=299 Identities=16% Similarity=0.242 Sum_probs=226.7
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcc----c---ccccccCCCeeeEEEecc-CceEEEEeCCcCCC
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKE----K---ERQDFTDGGLGHVEMLFR-CNYLALVGGGTHPK 76 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~----~---~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~~~ 76 (424)
+..|.+.|.+++|+|+|++||+|+.++ |+||+...... . .....+...+..++|.+. +.++++++
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~------ 552 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSN------ 552 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEe------
Confidence 556999999999999999999999888 99999754211 0 001113457888999875 56777766
Q ss_pred cCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecC-CceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeec-
Q psy3710 77 YPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRR-DKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPN- 150 (424)
Q Consensus 77 ~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 150 (424)
.|++|++||+.+++.+..+. |.+.|.+++|+| ++.++++ |+.|++||+. .+..+..+..+ ..+.++.|+
T Consensus 553 -~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~-~~~~~~~~~~~---~~v~~v~~~~ 627 (793)
T PLN00181 553 -FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN-QGVSIGTIKTK---ANICCVQFPS 627 (793)
T ss_pred -CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC-CCcEEEEEecC---CCeEEEEEeC
Confidence 58999999999999888887 899999999996 6665554 8999999996 66677766643 246777874
Q ss_pred CCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceee
Q psy3710 151 SNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCV 230 (424)
Q Consensus 151 ~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~ 230 (424)
+++..+++ |+.||.|++||++....+...+.+|...|.++.|. ++.+|++++.|+. |++||++.+..
T Consensus 628 ~~g~~lat-gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~---------- 694 (793)
T PLN00181 628 ESGRSLAF-GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSIS---------- 694 (793)
T ss_pred CCCCEEEE-EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCcc----------
Confidence 56888887 99999999999987644567788999999999997 6789999999999 99999875320
Q ss_pred eeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeecc
Q psy3710 231 LCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR 310 (424)
Q Consensus 231 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~ 310 (424)
+.. ..++..+.+|...+..++|+|++.+|++|+.|+. |++|+......+..+.
T Consensus 695 -------------~~~------------~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~-v~iw~~~~~~~~~s~~- 747 (793)
T PLN00181 695 -------------GIN------------ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE-VFVYHKAFPMPVLSYK- 747 (793)
T ss_pred -------------ccC------------CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE-EEEEECCCCCceEEEe-
Confidence 000 0123345589999999999999999999999999 9999987654433221
Q ss_pred CCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEE
Q psy3710 311 DSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYK 390 (424)
Q Consensus 311 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~ 390 (424)
......+... ....+...+..++|+|++.+|++|+.||.|++
T Consensus 748 ------------------~~~~~~~~~~--------------------~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i 789 (793)
T PLN00181 748 ------------------FKTIDPVSGL--------------------EVDDASQFISSVCWRGQSSTLVAANSTGNIKI 789 (793)
T ss_pred ------------------cccCCccccc--------------------ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEE
Confidence 1111100000 00112345789999999999999999999999
Q ss_pred EEe
Q psy3710 391 FMF 393 (424)
Q Consensus 391 ~~~ 393 (424)
|++
T Consensus 790 ~~~ 792 (793)
T PLN00181 790 LEM 792 (793)
T ss_pred Eec
Confidence 986
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=229.57 Aligned_cols=370 Identities=16% Similarity=0.225 Sum_probs=285.3
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe---------EEEEeCCcCcccccccccCCCeeeEEEecc--CceEEEEeCCcC
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG---------FRIYNCDPLKEKERQDFTDGGLGHVEMLFR--CNYLALVGGGTH 74 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~---------i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~ 74 (424)
..||++.|.|++.+||--.+|+|...+ ++|||..+...+....+-+..|++++|++. ++.+..+..+
T Consensus 100 y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s-- 177 (626)
T KOG2106|consen 100 YLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDS-- 177 (626)
T ss_pred ccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCC--
Confidence 458999999999999988888653222 899998777776666666778999999874 4666666655
Q ss_pred CCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCce-EEEe--eccEEEEeecCCCcee---EEEeeCCCCCeeEEE
Q psy3710 75 PKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKI-VVVL--EGLIKVYTFIQCPQQL---HVFETNPNPKGLCVL 147 (424)
Q Consensus 75 ~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~--~~~i~v~~~~~~~~~~---~~~~~~~~~~~~~~~ 147 (424)
.+..+.+||...+......+ .++.|....|+|... ++++ .+.+.+|+.+ .+... ..++.+.. ..+.++
T Consensus 178 ---~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~-~~~l~k~~~~fek~ek-k~Vl~v 252 (626)
T KOG2106|consen 178 ---NPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLR-GGSLVKRQGIFEKREK-KFVLCV 252 (626)
T ss_pred ---CccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEcc-CCceEEEeeccccccc-eEEEEE
Confidence 58899999999998888887 577888999998763 3333 8899999986 44333 34555555 779999
Q ss_pred eecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEec-
Q psy3710 148 CPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR- 226 (424)
Q Consensus 148 ~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~- 226 (424)
+|.++|..+ + |..+|.|.||+..+. +..+...+|.+.|.+++...+|.+| +|+.|.. |..|| ..-+.++..+-
T Consensus 253 ~F~engdvi-T-gDS~G~i~Iw~~~~~-~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRk-i~~Wd-~~y~k~r~~elP 326 (626)
T KOG2106|consen 253 TFLENGDVI-T-GDSGGNILIWSKGTN-RISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRK-IILWD-DNYRKLRETELP 326 (626)
T ss_pred EEcCCCCEE-e-ecCCceEEEEeCCCc-eEEeEeeecCCceEEEEEecCccEe-ecCccce-EEecc-ccccccccccCc
Confidence 999999865 3 999999999999875 4455555999999999999998655 5999999 99999 44444444332
Q ss_pred ----ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCC
Q psy3710 227 ----GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG 302 (424)
Q Consensus 227 ----~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~ 302 (424)
+++.++ +.+..+++ |...+.|..=.+.++.. ....+|......++.+|+...+++++.|+. +++|+ ..
T Consensus 327 e~~G~iRtv~--e~~~di~v-GTtrN~iL~Gt~~~~f~--~~v~gh~delwgla~hps~~q~~T~gqdk~-v~lW~--~~ 398 (626)
T KOG2106|consen 327 EQFGPIRTVA--EGKGDILV-GTTRNFILQGTLENGFT--LTVQGHGDELWGLATHPSKNQLLTCGQDKH-VRLWN--DH 398 (626)
T ss_pred hhcCCeeEEe--cCCCcEEE-eeccceEEEeeecCCce--EEEEecccceeeEEcCCChhheeeccCcce-EEEcc--CC
Confidence 233333 33333444 88888888777776553 334489999999999999999999999999 99999 44
Q ss_pred ceeee-----------eccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEE
Q psy3710 303 QKLNE-----------LRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICA 371 (424)
Q Consensus 303 ~~~~~-----------~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (424)
+++.+ |.|.| .+|.|+..|...+.|.++...+. ....+++++.++
T Consensus 399 k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~-----------------------~~~d~~~ls~v~ 454 (626)
T KOG2106|consen 399 KLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT-----------------------IHTDNEQLSVVR 454 (626)
T ss_pred ceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE-----------------------EEecCCceEEEE
Confidence 44432 56888 99999999999999999844322 233367899999
Q ss_pred EecCCCeEEEEeccCcEEEEEecCCcceeee------eehhhheecCCCceeeEE
Q psy3710 372 FGADSNSIIVICADGSYYKFMFNSKGECWRD------VYIQFLEMTNDSNLLSCI 420 (424)
Q Consensus 372 ~s~~~~~l~~~~~dg~v~~~~~~~~~~~~~~------~~~~~~~~~~d~~~l~~~ 420 (424)
|+|+|.+||+|+.|+.|++|.++.++..+.. .++..+++++|++||..-
T Consensus 455 ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 455 YSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSN 509 (626)
T ss_pred EcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEec
Confidence 9999999999999999999999987655432 445678999999999864
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=254.55 Aligned_cols=272 Identities=19% Similarity=0.295 Sum_probs=231.6
Q ss_pred cCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCc--EEEEEe-ecCCeEEEEecCCceEEEe---eccEEEE
Q psy3710 50 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ--VVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVY 123 (424)
Q Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~ 123 (424)
+...+.++.|+++++.++.++ .|+.+++|+..+++ ..+.+. |...|.+++|+|++.++++ |++|++|
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~-------~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAAS-------SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred ccCceEEEEEcCCCCeEEEcc-------CCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 367888999999999988887 58999999997777 666654 8899999999999988876 9999999
Q ss_pred eecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEE
Q psy3710 124 TFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATA 203 (424)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 203 (424)
|+......++++++|... +.+++|+|+++++++ |+.|++|++||++++ .+...+.+|.+.|++++|++++++|+++
T Consensus 231 d~~~~~~~~~~l~gH~~~--v~~~~f~p~g~~i~S-gs~D~tvriWd~~~~-~~~~~l~~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTY--VTSVAFSPDGNLLVS-GSDDGTVRIWDVRTG-ECVRKLKGHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred eccCCCeEEEEecCCCCc--eEEEEecCCCCEEEE-ecCCCcEEEEeccCC-eEEEeeeccCCceEEEEECCCCCEEEEc
Confidence 996566889999988855 789999999977777 999999999999996 8899999999999999999999999999
Q ss_pred ecCCcEEEEEECCCcce--eeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCC
Q psy3710 204 SYKGTLIRVFDTGSGQK--LNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTG 281 (424)
Q Consensus 204 ~~d~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 281 (424)
+.|+. |++||+.++.. ...+... .... ++++++|+|++
T Consensus 307 s~d~~-i~vwd~~~~~~~~~~~~~~~--------------------------------------~~~~-~~~~~~fsp~~ 346 (456)
T KOG0266|consen 307 SYDGT-IRVWDLETGSKLCLKLLSGA--------------------------------------ENSA-PVTSVQFSPNG 346 (456)
T ss_pred CCCcc-EEEEECCCCceeeeecccCC--------------------------------------CCCC-ceeEEEECCCC
Confidence 99999 99999998874 2332211 0223 69999999999
Q ss_pred CEEEEEeCCCcEEEEEECCCCceeeee---------------ccCCcEEEEEeCCCcEEEEEccccccccccccceeeec
Q psy3710 282 TRLATASYKGTLIRVFDTGSGQKLNEL---------------RRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASF 346 (424)
Q Consensus 282 ~~l~~~~~d~~~i~iwd~~~~~~~~~~---------------~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 346 (424)
++++++..|+. +++||+..+..+..+ .+.++++++|+.|+.|++|++.++..+.....+.
T Consensus 347 ~~ll~~~~d~~-~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~---- 421 (456)
T KOG0266|consen 347 KYLLSASLDRT-LKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS---- 421 (456)
T ss_pred cEEEEecCCCe-EEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC----
Confidence 99999999999 999999988766553 3578999999999999999999977665544321
Q ss_pred cCccccCCceeeEEeecCCCceEEEEecCCCeEEEEe--ccCcEEEEEec
Q psy3710 347 LPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVIC--ADGSYYKFMFN 394 (424)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~dg~v~~~~~~ 394 (424)
...+..++++|..+++++++ .|+.+++|..+
T Consensus 422 -----------------~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 422 -----------------KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred -----------------CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 35677889999999999998 79999999864
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=222.49 Aligned_cols=265 Identities=13% Similarity=0.169 Sum_probs=227.7
Q ss_pred ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCC
Q psy3710 98 FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADP 174 (424)
Q Consensus 98 ~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~ 174 (424)
|++.|+.+.|+|++.++++ |..|.+|+.....+....+++|.. .+..+.+.+|+..+++ ++.|.+++.||++++
T Consensus 46 h~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsg--AVM~l~~~~d~s~i~S-~gtDk~v~~wD~~tG 122 (338)
T KOG0265|consen 46 HKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSG--AVMELHGMRDGSHILS-CGTDKTVRGWDAETG 122 (338)
T ss_pred CcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccc--eeEeeeeccCCCEEEE-ecCCceEEEEecccc
Confidence 7899999999999999997 889999998656677777888874 4899999999999998 999999999999998
Q ss_pred CCCCcccccccCCeEEEEEccCC-CEEEEEecCCcEEEEEECCCcceeeEE--ecceeeeeecCCCCeEEEEeecCCeEE
Q psy3710 175 ERPPLDIAAHEAPLSCIALNQTG-TRLATASYKGTLIRVFDTGSGQKLNEL--RRGLCVLCPNSNNSLLAFPGRKSGHVH 251 (424)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~dg~i~ 251 (424)
+..+.+++|..-|+.+.-+.-| .++.+++.|++ +++||+++...++++ +....+++|...+..++. |+-|+.|+
T Consensus 123 -~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t-~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~s-ggIdn~ik 199 (338)
T KOG0265|consen 123 -KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGT-LKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVIS-GGIDNDIK 199 (338)
T ss_pred -eeeehhccccceeeecCccccCCeEEEecCCCce-EEEEeecccchhhccccceeEEEEEecccccceee-ccccCcee
Confidence 8889999999999999855444 45677888898 999999999999988 455778888887777765 99999999
Q ss_pred EEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCC----ceee----------------eeccC
Q psy3710 252 LVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG----QKLN----------------ELRRD 311 (424)
Q Consensus 252 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~----~~~~----------------~~~~~ 311 (424)
+||++... ....+.+|.++|+.+..+|+|.++.+-+.|.+ +++||++.. +++. .++|+
T Consensus 200 vWd~r~~d-~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 200 VWDLRKND-GLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeccccCc-ceEEeecccCceeeEEeccCCCccccccccce-EEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 99998866 46678899999999999999999999999999 999999753 2233 25689
Q ss_pred CcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEE
Q psy3710 312 SSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKF 391 (424)
Q Consensus 312 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~ 391 (424)
+..+.+|+.|..+++||..+...+-.++ .|.+.|..+.|+|...+|.+++.|.+|++=
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lyklp----------------------Gh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKLP----------------------GHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred CCccccccccceEEEeecccccEEEEcC----------------------CcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 9999999999999999998866544333 456778999999999999999999999874
Q ss_pred E
Q psy3710 392 M 392 (424)
Q Consensus 392 ~ 392 (424)
+
T Consensus 336 e 336 (338)
T KOG0265|consen 336 E 336 (338)
T ss_pred c
Confidence 4
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=224.42 Aligned_cols=284 Identities=16% Similarity=0.193 Sum_probs=240.4
Q ss_pred ccccCCceEEEEECC---CCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCe
Q psy3710 6 SSTYKNGLLYAGFNQ---DQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNR 81 (424)
Q Consensus 6 l~~h~~~V~~~~~s~---~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 81 (424)
-.||+.+|-.++||| +|-+|++++.|+ -.+-+-+++.-+.....|.+.|....+..+...-++++ .|-+
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaa-------adft 82 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAA-------ADFT 82 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhc-------ccch
Confidence 569999999999975 899999999999 77888889999999999999998877776666666666 6889
Q ss_pred EEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEE
Q psy3710 82 VMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAF 158 (424)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (424)
-++||.-+|..+..++|..-|.+++|+.|...+.+ +..++|||+.....+...+.+|.. ++..+.|....+.+++
T Consensus 83 akvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg--~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 83 AKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTG--GIRTVLWCHEDKCILS 160 (334)
T ss_pred hhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCC--cceeEEEeccCceEEe
Confidence 99999999999999999999999999999988776 678999999766677777887774 4767777777778887
Q ss_pred eeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc--eeeeeecCC
Q psy3710 159 PGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG--LCVLCPNSN 236 (424)
Q Consensus 159 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~ 236 (424)
+..|++||+||.+++ ..++.+. .+.+|+++.++++|++|.++.. +. |.+||..+...++.++.+ +...+++|+
T Consensus 161 -Sadd~tVRLWD~rTg-t~v~sL~-~~s~VtSlEvs~dG~ilTia~g-ss-V~Fwdaksf~~lKs~k~P~nV~SASL~P~ 235 (334)
T KOG0278|consen 161 -SADDKTVRLWDHRTG-TEVQSLE-FNSPVTSLEVSQDGRILTIAYG-SS-VKFWDAKSFGLLKSYKMPCNVESASLHPK 235 (334)
T ss_pred -eccCCceEEEEeccC-cEEEEEe-cCCCCcceeeccCCCEEEEecC-ce-eEEeccccccceeeccCccccccccccCC
Confidence 699999999999997 5555554 4678999999999988777654 44 999999999999888766 667788888
Q ss_pred CCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCcee
Q psy3710 237 NSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL 305 (424)
Q Consensus 237 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~ 305 (424)
. .++++|++|..++.||..++.......++|.++|.|+.|+|||...|+||.||+ |++|....++..
T Consensus 236 k-~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT-irlWQt~~~~~~ 302 (334)
T KOG0278|consen 236 K-EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT-IRLWQTTPGKTY 302 (334)
T ss_pred C-ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCce-EEEEEecCCCch
Confidence 8 555569999999999999988655445799999999999999999999999999 999998766543
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=241.65 Aligned_cols=280 Identities=14% Similarity=0.197 Sum_probs=238.5
Q ss_pred cccccccCCceEEEEECC-CCCeeEeecCCe-EEEEeCCc-CcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCC
Q psy3710 3 LGTSSTYKNGLLYAGFNQ-DQGCFACGMEDG-FRIYNCDP-LKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPN 79 (424)
Q Consensus 3 ~~~l~~h~~~V~~~~~s~-~g~~la~g~~~~-i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d 79 (424)
+.++.||+..|+++.|.| .+.+|++++.|+ |+||++-. ++++..+..|..+|..++|+.++..+++++ .|
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~s-------fD 279 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSAS-------FD 279 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeee-------cc
Confidence 356889999999999999 788889999999 99999866 667888888999999999999999999999 79
Q ss_pred CeEEEEECCCCcEEEEEeecCCeEEEEecCCc--eEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCe
Q psy3710 80 NRVMIWDDLKKQVVICLEFNAPVKGVRLRRDK--IVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSL 155 (424)
Q Consensus 80 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (424)
+.+++||+++|+++..+.....+.++.|+|++ .+++. |+.|+.||++ .++.++++..|-.. +..+.|-++|+.
T Consensus 280 ~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR-s~kvvqeYd~hLg~--i~~i~F~~~g~r 356 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR-SGKVVQEYDRHLGA--ILDITFVDEGRR 356 (503)
T ss_pred eeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEecc-chHHHHHHHhhhhh--eeeeEEccCCce
Confidence 99999999999999999999999999999998 33333 9999999998 88888888877744 888999999999
Q ss_pred EEEeeccCCeEEEEeCCCCCCCCc-ccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcce---eeEEecc----
Q psy3710 156 LAFPGRKSGHVHLVDLADPERPPL-DIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK---LNELRRG---- 227 (424)
Q Consensus 156 l~~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~---~~~~~~~---- 227 (424)
+++ .+.|+++++|+.+.+ .++. ....+.....++..+|++++++.-+.|.. |.++.+...-. ...++++
T Consensus 357 Fis-sSDdks~riWe~~~~-v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~-i~ifs~~~~~r~nkkK~feGh~vaG 433 (503)
T KOG0282|consen 357 FIS-SSDDKSVRIWENRIP-VPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY-IAIFSTVPPFRLNKKKRFEGHSVAG 433 (503)
T ss_pred Eee-eccCccEEEEEcCCC-ccchhhcchhhccCcceecCCCCCeehhhccCce-EEEEecccccccCHhhhhcceeccC
Confidence 998 999999999999876 3333 33344556778999999999999999999 99998754322 2334444
Q ss_pred -eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEE
Q psy3710 228 -LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT-GTRLATASYKGTLIRVFD 298 (424)
Q Consensus 228 -~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd 298 (424)
...+.|+|+|.+++. |+.+|.+.+||.++-+ ....+++|..++..+.|+|. ...+|+++.||. |++|+
T Consensus 434 ys~~v~fSpDG~~l~S-GdsdG~v~~wdwkt~k-l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~-Ikiwd 503 (503)
T KOG0282|consen 434 YSCQVDFSPDGRTLCS-GDSDGKVNFWDWKTTK-LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGL-IKIWD 503 (503)
T ss_pred ceeeEEEcCCCCeEEe-ecCCccEEEeechhhh-hhhccccCCcceEEEEecCCCcceeEecccCce-eEecC
Confidence 456789999998876 9999999999999866 46677899999999999995 468999999999 99996
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=211.38 Aligned_cols=261 Identities=15% Similarity=0.223 Sum_probs=213.8
Q ss_pred ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCC
Q psy3710 98 FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADP 174 (424)
Q Consensus 98 ~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~ 174 (424)
++++|.++.|+.+|.+..+ |.+|++|+.. .+.+++++.+|.+. +...+.+.|+..+++ |+.|..+.+||+.++
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~-rg~liktYsghG~E--VlD~~~s~Dnskf~s-~GgDk~v~vwDV~TG 91 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPL-RGALIKTYSGHGHE--VLDAALSSDNSKFAS-CGGDKAVQVWDVNTG 91 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCCceEEeeccc-ccceeeeecCCCce--eeecccccccccccc-CCCCceEEEEEcccC
Confidence 6899999999999988776 8999999996 88999999999855 788888889999998 999999999999998
Q ss_pred CCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCc--ceeeEEeccee-eeeecCCCCeEEEEeecCCeEE
Q psy3710 175 ERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG--QKLNELRRGLC-VLCPNSNNSLLAFPGRKSGHVH 251 (424)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~dg~i~ 251 (424)
+..+.+.+|.+.|+.++|+.+...+++|+.|.+ +++||.++. ++++.+..... ...+.- ....+++|+.||+++
T Consensus 92 -kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s-~r~wDCRS~s~ePiQildea~D~V~Si~v-~~heIvaGS~DGtvR 168 (307)
T KOG0316|consen 92 -KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSS-VRLWDCRSRSFEPIQILDEAKDGVSSIDV-AEHEIVAGSVDGTVR 168 (307)
T ss_pred -eeeeecccccceeeEEEecCcceEEEeccccce-eEEEEcccCCCCccchhhhhcCceeEEEe-cccEEEeeccCCcEE
Confidence 889999999999999999999999999999999 999999865 56665543321 222222 334555699999999
Q ss_pred EEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeecc--------------CCcEEEE
Q psy3710 252 LVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR--------------DSSYLCV 317 (424)
Q Consensus 252 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~--------------~~~~l~~ 317 (424)
.||++.+..... -...+|++++|++|++..+.++.|++ +++.|-.+|+.++.+.. ....+++
T Consensus 169 tydiR~G~l~sD---y~g~pit~vs~s~d~nc~La~~l~st-lrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~s 244 (307)
T KOG0316|consen 169 TYDIRKGTLSSD---YFGHPITSVSFSKDGNCSLASSLDST-LRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFS 244 (307)
T ss_pred EEEeecceeehh---hcCCcceeEEecCCCCEEEEeeccce-eeecccchhHHHHHhcccccceeeeeeeecccceeEEe
Confidence 999998774322 34578999999999999999999999 99999999999887543 4567999
Q ss_pred EeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCC-ceEEEEecCCCeEEEEeccCcEEEEE
Q psy3710 318 SSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDP-PCICAFGADSNSIIVICADGSYYKFM 392 (424)
Q Consensus 318 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~l~~~~~dg~v~~~~ 392 (424)
|++||.+++||+.+...+...+ .+... +.++++.|.-..++++.. +.+..|.
T Consensus 245 gSEDG~Vy~wdLvd~~~~sk~~----------------------~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 245 GSEDGKVYFWDLVDETQISKLS----------------------VVSTVIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred ccCCceEEEEEeccceeeeeec----------------------cCCceeEEeeecccCccceeEecC-Cceecee
Confidence 9999999999999977654433 33333 678889998777887774 4445553
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=248.46 Aligned_cols=256 Identities=14% Similarity=0.220 Sum_probs=212.9
Q ss_pred cCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCC
Q psy3710 99 NAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE 175 (424)
Q Consensus 99 ~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~ 175 (424)
...+.|..|++|..++|. |..|++|.+. ...+..++....- ..+=. ++.|-.+.+.|.++.
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~--p~kl~~lk~~~~l------------~~~d~-~sad~~~~~~D~~~~- 441 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLT--PKKLKKLKDASDL------------SNIDT-ESADVDVDMLDDDSS- 441 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecc--hhhhccccchhhh------------ccccc-cccchhhhhccccCC-
Confidence 567899999999988876 8999999985 2344444432211 11111 444545667776664
Q ss_pred CCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEeecCCeEEE
Q psy3710 176 RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHL 252 (424)
Q Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i 252 (424)
....++.+|.++|....|+|+.++|+++++|++ +|+|.+.+..++-.+++| +..+.|+|.| +.+++++.|++-++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~s-vRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArL 519 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSS-VRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARL 519 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcc-eeeeecccceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeee
Confidence 455678899999999999999999999999999 999999999999999877 5667788764 55566899999999
Q ss_pred EeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeee------------ccCCcEEEEEeC
Q psy3710 253 VDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNEL------------RRDSSYLCVSSD 320 (424)
Q Consensus 253 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~------------~~~~~~l~~~~~ 320 (424)
|...... +.+.+.+|-+.|.|+.|+|+..|+|+||.|.+ ||+||+.+|..++.| +|+|++|++|+.
T Consensus 520 Ws~d~~~-PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e 597 (707)
T KOG0263|consen 520 WSTDHNK-PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE 597 (707)
T ss_pred eecccCC-chhhhcccccccceEEECCcccccccCCCCce-EEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeeccc
Confidence 9998844 67888899999999999999999999999999 999999999988754 689999999999
Q ss_pred CCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCC
Q psy3710 321 HGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSK 396 (424)
Q Consensus 321 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~ 396 (424)
||.|.+||+.+++.+.. +..|.+.+.++.||.||..||+|+.|.+|++||+...
T Consensus 598 d~~I~iWDl~~~~~v~~----------------------l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLVKQ----------------------LKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCcEEEEEcCCCcchhh----------------------hhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999999887655 3445678899999999999999999999999999753
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=230.68 Aligned_cols=269 Identities=19% Similarity=0.324 Sum_probs=208.3
Q ss_pred ccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEE
Q psy3710 47 QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKV 122 (424)
Q Consensus 47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v 122 (424)
...|.++|.+++|+++++.+++++ .|+.+++|+..+++....+. +...+..+.|+|++..+++ ++.|++
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~-------~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGS-------GDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRL 77 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEee-------cCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence 345789999999999999998887 57999999999888777776 6788889999999854443 899999
Q ss_pred EeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEE
Q psy3710 123 YTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLAT 202 (424)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 202 (424)
|++. ..+....+..+.. .+.++.++++++++++ ++.+|.+.+||+.+. +....+..|...+.+++|+|++.++++
T Consensus 78 ~~~~-~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~ 152 (289)
T cd00200 78 WDLE-TGECVRTLTGHTS--YVSSVAFSPDGRILSS-SSRDKTIKVWDVETG-KCLTTLRGHTDWVNSVAFSPDGTFVAS 152 (289)
T ss_pred EEcC-cccceEEEeccCC--cEEEEEEcCCCCEEEE-ecCCCeEEEEECCCc-EEEEEeccCCCcEEEEEEcCcCCEEEE
Confidence 9996 5566666766553 4888999999888876 777999999999865 566777789999999999999888888
Q ss_pred EecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCC
Q psy3710 203 ASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT 282 (424)
Q Consensus 203 ~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 282 (424)
++.++. |++||+++++.+..+. .|...+.+++|+|+++
T Consensus 153 ~~~~~~-i~i~d~~~~~~~~~~~-----------------------------------------~~~~~i~~~~~~~~~~ 190 (289)
T cd00200 153 SSQDGT-IKLWDLRTGKCVATLT-----------------------------------------GHTGEVNSVAFSPDGE 190 (289)
T ss_pred EcCCCc-EEEEEccccccceeEe-----------------------------------------cCccccceEEECCCcC
Confidence 888999 9999998666544443 4555667777777776
Q ss_pred EEEEEeCCCcEEEEEECCCCceeeee------------ccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCcc
Q psy3710 283 RLATASYKGTLIRVFDTGSGQKLNEL------------RRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKY 350 (424)
Q Consensus 283 ~l~~~~~d~~~i~iwd~~~~~~~~~~------------~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 350 (424)
.+++++.++. |++||+++++.+..+ .+++.++++++.|+.|++|++.+++....
T Consensus 191 ~l~~~~~~~~-i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~------------- 256 (289)
T cd00200 191 KLLSSSSDGT-IKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQT------------- 256 (289)
T ss_pred EEEEecCCCc-EEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEE-------------
Confidence 6666666776 777777665554433 34556666666677777777766443322
Q ss_pred ccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEE
Q psy3710 351 FSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFM 392 (424)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~ 392 (424)
+..+...+..++|+|++++|++++.||.+++|+
T Consensus 257 ---------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 257 ---------LSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ---------ccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 223445678899999999999999999999996
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=237.12 Aligned_cols=235 Identities=17% Similarity=0.269 Sum_probs=205.4
Q ss_pred ceeEEEeeCCCCCeeEEEeecC-CCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCc
Q psy3710 130 QQLHVFETNPNPKGLCVLCPNS-NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGT 208 (424)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 208 (424)
+.+..+.+|. .++.++.|.| .+.+|++ ++.|+.|+||++.....+++++.+|..+|.+++|+++|..+++++.|+.
T Consensus 205 k~~~~~~gH~--kgvsai~~fp~~~hLlLS-~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 205 KLSHNLSGHT--KGVSAIQWFPKKGHLLLS-GGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred hheeeccCCc--cccchhhhccceeeEEEe-cCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence 4455566665 5688899999 5666665 9999999999999877899999999999999999999999999999999
Q ss_pred EEEEEECCCcceeeEEecc--eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEE
Q psy3710 209 LIRVFDTGSGQKLNELRRG--LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLAT 286 (424)
Q Consensus 209 ~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 286 (424)
+++||+++|+++..+..+ ..++.++|++..++++|+.|+.|+.||+++++ .++.+..|-+.|..+.|-++|+++++
T Consensus 282 -lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~rFis 359 (503)
T KOG0282|consen 282 -LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGAILDITFVDEGRRFIS 359 (503)
T ss_pred -eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhheeeeEEccCCceEee
Confidence 999999999999999866 67889999999999999999999999999987 56777789999999999999999999
Q ss_pred EeCCCcEEEEEECCCCceeee-----------------------------------------------------------
Q psy3710 287 ASYKGTLIRVFDTGSGQKLNE----------------------------------------------------------- 307 (424)
Q Consensus 287 ~~~d~~~i~iwd~~~~~~~~~----------------------------------------------------------- 307 (424)
++.|++ ++||+.+.+-.++.
T Consensus 360 sSDdks-~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v 438 (503)
T KOG0282|consen 360 SSDDKS-VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQV 438 (503)
T ss_pred eccCcc-EEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeE
Confidence 999999 99999987544331
Q ss_pred -eccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecC-CCeEEEEecc
Q psy3710 308 -LRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGAD-SNSIIVICAD 385 (424)
Q Consensus 308 -~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~d 385 (424)
|+|||++|++|+.||.+.+||.++-+.+.. ++.|.+++..+.|.|. ...+|+++-|
T Consensus 439 ~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~----------------------lkah~~~ci~v~wHP~e~Skvat~~w~ 496 (503)
T KOG0282|consen 439 DFSPDGRTLCSGDSDGKVNFWDWKTTKLVSK----------------------LKAHDQPCIGVDWHPVEPSKVATCGWD 496 (503)
T ss_pred EEcCCCCeEEeecCCccEEEeechhhhhhhc----------------------cccCCcceEEEEecCCCcceeEecccC
Confidence 458999999999999999999999766544 4456788899999995 4578999999
Q ss_pred CcEEEEE
Q psy3710 386 GSYYKFM 392 (424)
Q Consensus 386 g~v~~~~ 392 (424)
|.|++|+
T Consensus 497 G~Ikiwd 503 (503)
T KOG0282|consen 497 GLIKIWD 503 (503)
T ss_pred ceeEecC
Confidence 9999996
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-32 Score=231.91 Aligned_cols=269 Identities=16% Similarity=0.218 Sum_probs=229.6
Q ss_pred cCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEee
Q psy3710 50 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTF 125 (424)
Q Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~ 125 (424)
+...|.++.+.|....++++- ..|.+.|||.++...++.+. ..-+|++..|-+....+++ |..|+||+.
T Consensus 12 rSdRVKsVd~HPtePw~la~L-------ynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAAL-------YNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred cCCceeeeecCCCCceEEEee-------ecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 678899999999999887776 46999999999999999999 6889999999877766654 899999999
Q ss_pred cCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEcc-CCCEEEEEe
Q psy3710 126 IQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ-TGTRLATAS 204 (424)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 204 (424)
. +.+.++.++.|.. .+.+++.+|...++++ ++.|-.|++||.+..-.+.+++.+|..-|.+++|+| |.+.+++++
T Consensus 85 n-t~ekV~~FeAH~D--yIR~iavHPt~P~vLt-sSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 85 N-TGEKVKTFEAHSD--YIRSIAVHPTLPYVLT-SSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred c-cceeeEEeecccc--ceeeeeecCCCCeEEe-cCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence 6 8999999999884 4888999999999998 999999999999987677889999999999999999 568999999
Q ss_pred cCCcEEEEEECCCcceeeEEecc---eeeeeecCCC-CeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCC
Q psy3710 205 YKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNN-SLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT 280 (424)
Q Consensus 205 ~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 280 (424)
-|++ |++|.+.+..+..++++| ++++++-+.+ +..+++|++|..|++||.++.. .++++.+|...|..+.|+|.
T Consensus 161 LDrT-VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-CV~TLeGHt~Nvs~v~fhp~ 238 (794)
T KOG0276|consen 161 LDRT-VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-CVQTLEGHTNNVSFVFFHPE 238 (794)
T ss_pred cccc-EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH-HHHHhhcccccceEEEecCC
Confidence 9999 999999999999999876 6777776654 5577789999999999999866 46788899999999999999
Q ss_pred CCEEEEEeCCCcEEEEEECCCCceeeeec------------cCCcEEEEEeCCCcEEEEEccccc
Q psy3710 281 GTRLATASYKGTLIRVFDTGSGQKLNELR------------RDSSYLCVSSDHGTVHVFSVDEAQ 333 (424)
Q Consensus 281 ~~~l~~~~~d~~~i~iwd~~~~~~~~~~~------------~~~~~l~~~~~d~~i~iw~~~~~~ 333 (424)
-..+++|+.||+ +|||+..+-+...++. +.+..++.|.++|.| +..+...+
T Consensus 239 lpiiisgsEDGT-vriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i-~v~lgree 301 (794)
T KOG0276|consen 239 LPIIISGSEDGT-VRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSV-TVKLGREE 301 (794)
T ss_pred CcEEEEecCCcc-EEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcE-EEEccCCC
Confidence 999999999999 9999998876655432 344556666666554 34544433
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=210.72 Aligned_cols=331 Identities=32% Similarity=0.514 Sum_probs=261.1
Q ss_pred ccCCceEEEEECCCCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEEC
Q psy3710 8 TYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDD 87 (424)
Q Consensus 8 ~h~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~ 87 (424)
+....+..+.|++|...|..|+.+|.++|+.++...... ...+.+..++++++...+|+++..+ .+.+++.+.
T Consensus 3 ~~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~--~~~~~~~IvEmLFSSSLvaiV~~~q-----pr~Lkv~~~ 75 (391)
T KOG2110|consen 3 GKKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFS--KDTEGVSIVEMLFSSSLVAIVSIKQ-----PRKLKVVHF 75 (391)
T ss_pred CCCcceeeeeeccceeEEEccCCCceeEEecCchHHhhc--ccCCCeEEEEeecccceeEEEecCC-----CceEEEEEc
Confidence 345678888999999999999999999999988877322 2356777899999999999999753 478999999
Q ss_pred CCCcEEEEEeecCCeEEEEecCCceEEEeeccEEEEeecCCCceeEEEeeC-CCCCeeEEEeecCCCCeEEEeecc-CCe
Q psy3710 88 LKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHVFETN-PNPKGLCVLCPNSNNSLLAFPGRK-SGH 165 (424)
Q Consensus 88 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~-dg~ 165 (424)
+.+..++.+.++.+|.++.++.+..+++....|+|||++ +.+.++++... .++.+++++++++.+.+++.-++. .|.
T Consensus 76 Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~-~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 76 KKKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIK-DMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGD 154 (391)
T ss_pred ccCceEEEEecCCceEEEEEccceEEEEEcccEEEEecc-cceeehhhhccCCCccceEeeccCCCCceEEecCCCCCce
Confidence 999999999999999999999999999998889999997 89999998876 677889999999999999985554 699
Q ss_pred EEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEee
Q psy3710 166 VHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGR 245 (424)
Q Consensus 166 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (424)
|.+||..+- +++..+.+|++++.+++|+++|.+||++|+.|+.||++.+.+|+.+.+|+.+.
T Consensus 155 V~l~d~~nl-~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~----------------- 216 (391)
T KOG2110|consen 155 VVLFDTINL-QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT----------------- 216 (391)
T ss_pred EEEEEcccc-eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc-----------------
Confidence 999999987 78889999999999999999999999999999999999999999999998652
Q ss_pred cCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeeccCCcEEEEEeCCCcEE
Q psy3710 246 KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYLCVSSDHGTVH 325 (424)
Q Consensus 246 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~l~~~~~d~~i~ 325 (424)
-...|.+++|+|++++|++.|..++ |++|.++... ..+.+ -....++...
T Consensus 217 ----------------------~~~~IySL~Fs~ds~~L~~sS~TeT-VHiFKL~~~~----~~~~~---~p~~~~~~~~ 266 (391)
T KOG2110|consen 217 ----------------------YPVSIYSLSFSPDSQFLAASSNTET-VHIFKLEKVS----NNPPE---SPTAGTSWFG 266 (391)
T ss_pred ----------------------eeeEEEEEEECCCCCeEEEecCCCe-EEEEEecccc----cCCCC---CCCCCCcccc
Confidence 1235889999999999999999999 9999987644 11111 0000011111
Q ss_pred EEEccccccccccccceeeeccCcc----ccCCceeeEEeecCCCc-eEEEEec--CCCeEEEEeccCcEEEEEecC--C
Q psy3710 326 VFSVDEAQKINKQSSLASASFLPKY----FSSSWSFCKFQIPSDPP-CICAFGA--DSNSIIVICADGSYYKFMFNS--K 396 (424)
Q Consensus 326 iw~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~s~--~~~~l~~~~~dg~v~~~~~~~--~ 396 (424)
-|... ...++|.. .+....++..+++.... ..+.+.+ ...++.+++.||.++.|.++. +
T Consensus 267 ~~sk~------------~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~g 334 (391)
T KOG2110|consen 267 KVSKA------------ATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEG 334 (391)
T ss_pred hhhhh------------hhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCC
Confidence 11100 00122222 23334566666666554 5566764 778999999999999999986 5
Q ss_pred cceeeeeehh
Q psy3710 397 GECWRDVYIQ 406 (424)
Q Consensus 397 ~~~~~~~~~~ 406 (424)
|+|.......
T Consensus 335 Gec~lik~h~ 344 (391)
T KOG2110|consen 335 GECALIKRHF 344 (391)
T ss_pred ceeEEEEeec
Confidence 8887755443
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=226.92 Aligned_cols=274 Identities=14% Similarity=0.195 Sum_probs=218.5
Q ss_pred ccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEE
Q psy3710 8 TYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWD 86 (424)
Q Consensus 8 ~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd 86 (424)
.....|.|+.+. ...+++|..|. |+|||.++..+.....+|.|+|.++.+ +...+++.+ +|.+|++||
T Consensus 195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGS-------SDsTvrvWD 263 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGS-------SDSTVRVWD 263 (499)
T ss_pred ccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecC-------CCceEEEEe
Confidence 456789998885 44788998888 999999999998889999999966655 455444433 599999999
Q ss_pred CCCCcEEEEEe-ecCCeEEEEecCCceEEEe-eccEEEEeecCCC--ceeEEEeeCCCCCeeEEEeecCCCCeEEEeecc
Q psy3710 87 DLKKQVVICLE-FNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQCP--QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRK 162 (424)
Q Consensus 87 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (424)
+++|+++.++- |...|..+.|+..-...++ |.++.+||+..+. ...+.+.+|... +..+.| +.+++++ ++.
T Consensus 264 v~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa--VNvVdf--d~kyIVs-ASg 338 (499)
T KOG0281|consen 264 VNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA--VNVVDF--DDKYIVS-ASG 338 (499)
T ss_pred ccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh--eeeecc--ccceEEE-ecC
Confidence 99999999887 7899999999987766666 9999999996332 233456666644 555555 4668887 999
Q ss_pred CCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEE
Q psy3710 163 SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAF 242 (424)
Q Consensus 163 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (424)
|.+|++|++.+. ..++++.+|+..|.|+.+ .|+++++|+.|.+ |++||++.|.+++.++++...+..-..+..-++
T Consensus 339 DRTikvW~~st~-efvRtl~gHkRGIAClQY--r~rlvVSGSSDnt-IRlwdi~~G~cLRvLeGHEeLvRciRFd~krIV 414 (499)
T KOG0281|consen 339 DRTIKVWSTSTC-EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEGHEELVRCIRFDNKRIV 414 (499)
T ss_pred CceEEEEeccce-eeehhhhcccccceehhc--cCeEEEecCCCce-EEEEeccccHHHHHHhchHHhhhheeecCceee
Confidence 999999999997 889999999999999887 4789999999999 999999999999999988443322223344556
Q ss_pred EeecCCeEEEEeCCCCCCC--------CeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCce
Q psy3710 243 PGRKSGHVHLVDLADPERP--------PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK 304 (424)
Q Consensus 243 ~~~~dg~i~i~d~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~ 304 (424)
+|..||+|++||+.....+ ...+..|.+.|..+.|. ...+++++.|.+ |.|||+..+..
T Consensus 415 SGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddt-ILiWdFl~~~~ 481 (499)
T KOG0281|consen 415 SGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDT-ILIWDFLNGPP 481 (499)
T ss_pred eccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCe-EEEEEcCCCCc
Confidence 7999999999999886644 23445789999999994 568888888888 99999876543
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=223.07 Aligned_cols=267 Identities=11% Similarity=0.128 Sum_probs=217.9
Q ss_pred ecCCeEEEEecCCceEEEe---eccEEEEeecCCC--ceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCC
Q psy3710 98 FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCP--QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLA 172 (424)
Q Consensus 98 ~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~ 172 (424)
|...|+-+.|+++|+++|+ |.+..+|.+.... +..+++.+|..+ +..+.||||.+++++ ++.+..+.+||+.
T Consensus 223 htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~--V~yi~wSPDdryLla-Cg~~e~~~lwDv~ 299 (519)
T KOG0293|consen 223 HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQP--VSYIMWSPDDRYLLA-CGFDEVLSLWDVD 299 (519)
T ss_pred CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCc--eEEEEECCCCCeEEe-cCchHheeeccCC
Confidence 8899999999999999997 8899999986443 346677777755 888999999999998 8888889999999
Q ss_pred CCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe----cceeeeeecCCCCeEEEEeecCC
Q psy3710 173 DPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR----RGLCVLCPNSNNSLLAFPGRKSG 248 (424)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~dg 248 (424)
++.....--.+|...+.+.+|.|||..+++|+.|++ +..||+... .....+ ..+..+++.++|+.++. .+.|.
T Consensus 300 tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~-i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~-v~~d~ 376 (519)
T KOG0293|consen 300 TGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRT-IIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLL-VTVDK 376 (519)
T ss_pred cchhhhhcccCcCCCcceeEEccCCceeEecCCCCc-EEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEE-Eeccc
Confidence 973333333345688999999999999999999999 999999644 333332 23677899999999988 56899
Q ss_pred eEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec---------------cCCc
Q psy3710 249 HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR---------------RDSS 313 (424)
Q Consensus 249 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~---------------~~~~ 313 (424)
.|++|+..+.... .+-....+|++...|.|++++++.-.+.. +++||++..+.+..+. .+..
T Consensus 377 ~i~l~~~e~~~dr--~lise~~~its~~iS~d~k~~LvnL~~qe-i~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~ 453 (519)
T KOG0293|consen 377 KIRLYNREARVDR--GLISEEQPITSFSISKDGKLALVNLQDQE-IHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDK 453 (519)
T ss_pred ceeeechhhhhhh--ccccccCceeEEEEcCCCcEEEEEcccCe-eEEeecchhhHHHHhhcccccceEEEeccCCCCcc
Confidence 9999998875432 12245678999999999999999999999 9999999777666543 2568
Q ss_pred EEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEec-CCCeEEEEeccCcEEEEE
Q psy3710 314 YLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGA-DSNSIIVICADGSYYKFM 392 (424)
Q Consensus 314 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~v~~~~ 392 (424)
++++|++|+.|+||+..+|+.+..+++ |...+.+++|+| |..++|++++||+|+||.
T Consensus 454 fiaSGSED~kvyIWhr~sgkll~~LsG----------------------Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRISGKLLAVLSG----------------------HSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred eEEecCCCceEEEEEccCCceeEeecC----------------------CcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 999999999999999999988665444 556788999999 667899999999999998
Q ss_pred ecC
Q psy3710 393 FNS 395 (424)
Q Consensus 393 ~~~ 395 (424)
..+
T Consensus 512 ~~~ 514 (519)
T KOG0293|consen 512 PSD 514 (519)
T ss_pred CCc
Confidence 763
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=232.25 Aligned_cols=351 Identities=10% Similarity=0.183 Sum_probs=273.9
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEE
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVM 83 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~ 83 (424)
.....+..|..++|+|...++.++--.| |++||..-+..+.+...|+|+|..+.|.|+...+++.| .|-.|+
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGG-------DDykIk 76 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGG-------DDYKIK 76 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecC-------CccEEE
Confidence 3455678899999999999999998888 99999998888888999999999999999999887766 589999
Q ss_pred EEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEe
Q psy3710 84 IWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFP 159 (424)
Q Consensus 84 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (424)
+|+.++.+++.++. |-+-|+.+.|++..-++.+ |.+|+||++. +.+++..+.+|.+- +.|..|+|....+++
T Consensus 77 VWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq-sr~~iavltGHnHY--VMcAqFhptEDlIVS- 152 (1202)
T KOG0292|consen 77 VWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ-SRKCIAVLTGHNHY--VMCAQFHPTEDLIVS- 152 (1202)
T ss_pred EEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEecc-CCceEEEEecCceE--EEeeccCCccceEEE-
Confidence 99999999999888 8999999999999877765 8899999996 89999999999855 888899998888887
Q ss_pred eccCCeEEEEeCCCCCC----------------------------CCcccccccCCeEEEEEccCCCEEEEEecCCcEEE
Q psy3710 160 GRKSGHVHLVDLADPER----------------------------PPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIR 211 (424)
Q Consensus 160 ~~~dg~i~i~d~~~~~~----------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~ 211 (424)
++-|.+|++||+..-++ ....+.+|...|+-++|+|.-..+++|+.|.. |+
T Consensus 153 aSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq-VK 231 (1202)
T KOG0292|consen 153 ASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VK 231 (1202)
T ss_pred ecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce-ee
Confidence 99999999999863210 11245689999999999999999999999999 99
Q ss_pred EEECCCcce--eeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEE
Q psy3710 212 VFDTGSGQK--LNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLAT 286 (424)
Q Consensus 212 iwd~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 286 (424)
+|.+...+. +.+..+| +.++-|+|.... +++.++|++|++||+.... .+.+++...+....++-+|..+++|+
T Consensus 232 lWrmnetKaWEvDtcrgH~nnVssvlfhp~q~l-IlSnsEDksirVwDm~kRt-~v~tfrrendRFW~laahP~lNLfAA 309 (1202)
T KOG0292|consen 232 LWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDL-ILSNSEDKSIRVWDMTKRT-SVQTFRRENDRFWILAAHPELNLFAA 309 (1202)
T ss_pred EEEeccccceeehhhhcccCCcceEEecCccce-eEecCCCccEEEEeccccc-ceeeeeccCCeEEEEEecCCcceeee
Confidence 999865432 2233333 666777776654 4569999999999998865 45666667788999999999987776
Q ss_pred EeCCCcEEEEEECCCCceeeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeec---
Q psy3710 287 ASYKGTLIRVFDTGSGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIP--- 363 (424)
Q Consensus 287 ~~~d~~~i~iwd~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 363 (424)
|-..| +.+|.++...+...++.++ |...- |..|+-+|+.+.+...- +..+.+
T Consensus 310 gHDsG--m~VFkleRErpa~~v~~n~--LfYvk-d~~i~~~d~~t~~d~~v--------------------~~lr~~g~~ 364 (1202)
T KOG0292|consen 310 GHDSG--MIVFKLERERPAYAVNGNG--LFYVK-DRFIRSYDLRTQKDTAV--------------------ASLRRPGTL 364 (1202)
T ss_pred ecCCc--eEEEEEcccCceEEEcCCE--EEEEc-cceEEeeecccccccee--------------------EeccCCCcc
Confidence 65555 8899888666655555443 33332 88999999988432211 111111
Q ss_pred CCCceEEEEecCCCeEEEEec--cCcEEEEEec
Q psy3710 364 SDPPCICAFGADSNSIIVICA--DGSYYKFMFN 394 (424)
Q Consensus 364 ~~~~~~~~~s~~~~~l~~~~~--dg~v~~~~~~ 394 (424)
..+..++.++|..+-+..+++ .|...++.+.
T Consensus 365 ~~~~~smsYNpae~~vlics~~~n~~y~L~~ip 397 (1202)
T KOG0292|consen 365 WQPPRSLSYNPAENAVLICSNLDNGEYELVQIP 397 (1202)
T ss_pred cCCcceeeeccccCeEEEEeccCCCeEEEEEec
Confidence 245667788886665555532 4555566655
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-32 Score=206.73 Aligned_cols=265 Identities=17% Similarity=0.261 Sum_probs=214.8
Q ss_pred EEEEecC---CceEEEe--------eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeC
Q psy3710 103 KGVRLRR---DKIVVVL--------EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDL 171 (424)
Q Consensus 103 ~~~~~~~---~~~~~~~--------~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~ 171 (424)
.++.|+| +...+|+ .|.+.|.++. ..+-+..+....-......++|++....++.+++.||++++||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~-~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVT-DPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecC-CCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 5677775 3444443 6888998885 45555555555555668889999887777766999999999998
Q ss_pred CCCCCCCcccccccCCeEEEEEcc-CCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEeecC
Q psy3710 172 ADPERPPLDIAAHEAPLSCIALNQ-TGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGRKS 247 (424)
Q Consensus 172 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d 247 (424)
.....++..++.|..+|.++.|++ +++.++++|.|++ |++|+...++.+.++.++ +....++|....++++++.|
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~T-iKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd 169 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGT-IKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGD 169 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCc-eEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCC
Confidence 888789999999999999999998 4567888899999 999999999999999987 56678999999999999999
Q ss_pred CeEEEEeCCCCCCCCeeeccCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEECCCCc-eeee------------eccC-C
Q psy3710 248 GHVHLVDLADPERPPLDIAAHEAPLSCIALNQ-TGTRLATASYKGTLIRVFDTGSGQ-KLNE------------LRRD-S 312 (424)
Q Consensus 248 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~~i~iwd~~~~~-~~~~------------~~~~-~ 312 (424)
+.+++||++...+.+. +..|...|.++.|+. +.+.|+||+.|+. ||.||++.-+ ++.+ ++|. .
T Consensus 170 ~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~ 247 (311)
T KOG0277|consen 170 GTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA 247 (311)
T ss_pred ceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCce-EEEEehhhccccceeecCCceEEEEEecCcchh
Confidence 9999999998875544 789999999999997 6779999999999 9999998743 3333 3443 4
Q ss_pred cEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEec-CCCeEEEEeccCcEEEE
Q psy3710 313 SYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGA-DSNSIIVICADGSYYKF 391 (424)
Q Consensus 313 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~v~~~ 391 (424)
..|++++.|-+++|||...+....+. ...|.+-+..+.||+ ++.++|+++-|+.++||
T Consensus 248 ~lLaSasYDmT~riw~~~~~ds~~e~---------------------~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw 306 (311)
T KOG0277|consen 248 SLLASASYDMTVRIWDPERQDSAIET---------------------VDHHTEFVCGLDWSLFDPGQVASTGWDELLYVW 306 (311)
T ss_pred hHhhhccccceEEecccccchhhhhh---------------------hhccceEEeccccccccCceeeecccccceeee
Confidence 67899999999999999865432211 223455567788887 67899999999999999
Q ss_pred E
Q psy3710 392 M 392 (424)
Q Consensus 392 ~ 392 (424)
+
T Consensus 307 ~ 307 (311)
T KOG0277|consen 307 N 307 (311)
T ss_pred c
Confidence 7
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=200.02 Aligned_cols=271 Identities=14% Similarity=0.139 Sum_probs=224.6
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCccccc--ccccCCCeeeEEEeccC-ceEEEEeCCcCCCcCCC
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKER--QDFTDGGLGHVEMLFRC-NYLALVGGGTHPKYPNN 80 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~-~~l~~~~~~~~~~~~d~ 80 (424)
.+++|...|.+++|+.+|..||+|+-++ +.+|+++..+.... ...|.+.+-.+.|.|.. +.+++++ .|+
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas-------~dk 87 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATAS-------GDK 87 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEec-------CCc
Confidence 3678999999999999999999999888 99999988855333 33477788888888754 6777777 479
Q ss_pred eEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEE
Q psy3710 81 RVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLA 157 (424)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (424)
+|++||.+.+++...+.....-.-+.|+|++.+++. |..|...|.+ +.+.....+. ...+..++|+.++.+++
T Consensus 88 ~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r-~~~~~~~~~~---~~e~ne~~w~~~nd~Ff 163 (313)
T KOG1407|consen 88 TIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDAR-TYKIVNEEQF---KFEVNEISWNNSNDLFF 163 (313)
T ss_pred eEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEec-ccceeehhcc---cceeeeeeecCCCCEEE
Confidence 999999999999999997777778889999987776 7889999987 5554444332 23456677877777777
Q ss_pred EeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe---cceeeeeec
Q psy3710 158 FPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR---RGLCVLCPN 234 (424)
Q Consensus 158 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~---~~~~~~~~~ 234 (424)
. -...|.|.|...... +++..+++|.....+|.|+|+|+++++|+.|.. +.+||+...-+++.+. -+++.++|+
T Consensus 164 l-t~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA~GsADAl-vSLWD~~ELiC~R~isRldwpVRTlSFS 240 (313)
T KOG1407|consen 164 L-TNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFATGSADAL-VSLWDVDELICERCISRLDWPVRTLSFS 240 (313)
T ss_pred E-ecCCceEEEEecccc-ccccccccCCcceEEEEECCCCceEeeccccce-eeccChhHhhhheeeccccCceEEEEec
Confidence 6 566799999999976 899999999999999999999999999999999 9999998876666655 458999999
Q ss_pred CCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCc
Q psy3710 235 SNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGT 292 (424)
Q Consensus 235 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 292 (424)
.+|+.++. |++|-.|-|-+++++.+.... .+.++...++|+|...+||.++.|..
T Consensus 241 ~dg~~lAS-aSEDh~IDIA~vetGd~~~eI--~~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 241 HDGRMLAS-ASEDHFIDIAEVETGDRVWEI--PCEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred cCcceeec-cCccceEEeEecccCCeEEEe--eccCCceeEEecCCCceeeEEecCCC
Confidence 99987765 999999999999998854333 68899999999999999999988753
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=211.08 Aligned_cols=283 Identities=16% Similarity=0.189 Sum_probs=229.4
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCc------------Ccc------cccccccCCCeeeEEEeccCceE
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDP------------LKE------KERQDFTDGGLGHVEMLFRCNYL 66 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~------------~~~------~~~~~~~~~~i~~~~~~~~~~~l 66 (424)
+..|..++++.+|||||.++|+|+.|. |+|.|++. +.. +...--|...|..+.|.|....|
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL 187 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL 187 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence 678999999999999999999999999 99999761 111 11111277899999999999999
Q ss_pred EEEeCCcCCCcCCCeEEEEECCCCcEEEE---EeecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEE-EeeCC
Q psy3710 67 ALVGGGTHPKYPNNRVMIWDDLKKQVVIC---LEFNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHV-FETNP 139 (424)
Q Consensus 67 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~-~~~~~ 139 (424)
++.+ .|++|+++|..+....+. ++...+|+++.|+|.|.++.. ...+++||+. +.++... .....
T Consensus 188 iS~s-------rD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~-T~QcfvsanPd~q 259 (430)
T KOG0640|consen 188 ISGS-------RDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN-TYQCFVSANPDDQ 259 (430)
T ss_pred Eecc-------CCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEecc-ceeEeeecCcccc
Confidence 8887 699999999876544433 345779999999999977765 5689999997 5444332 23334
Q ss_pred CCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccc-ccc-CCeEEEEEccCCCEEEEEecCCcEEEEEECCC
Q psy3710 140 NPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA-AHE-APLSCIALNQTGTRLATASYKGTLIRVFDTGS 217 (424)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~ 217 (424)
+...++++.+++.+++.++ |+.||.|++||--++ +++.++. +|. ..|.+..|..+|+++++.+.|.. +++|.+.+
T Consensus 260 ht~ai~~V~Ys~t~~lYvT-aSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~-vkLWEi~t 336 (430)
T KOG0640|consen 260 HTGAITQVRYSSTGSLYVT-ASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST-VKLWEIST 336 (430)
T ss_pred cccceeEEEecCCccEEEE-eccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce-eeeeeecC
Confidence 4466899999999998888 999999999998876 5666554 564 57999999999999999999999 99999999
Q ss_pred cceeeEEecc--------eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeC
Q psy3710 218 GQKLNELRRG--------LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY 289 (424)
Q Consensus 218 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 289 (424)
++++.++.+. .....|+....++++.--..+.+.-||.++..+....-.+|.+.+..+.-||.+.-+.+++.
T Consensus 337 ~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsd 416 (430)
T KOG0640|consen 337 GRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSD 416 (430)
T ss_pred CceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecc
Confidence 9999988754 23345666777777767778899999999987655555699999999999999999999999
Q ss_pred CCcEEEEEECC
Q psy3710 290 KGTLIRVFDTG 300 (424)
Q Consensus 290 d~~~i~iwd~~ 300 (424)
|.. +|+|--+
T Consensus 417 D~r-aRFWyrr 426 (430)
T KOG0640|consen 417 DFR-ARFWYRR 426 (430)
T ss_pred cce-eeeeeec
Confidence 999 9999654
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-32 Score=206.53 Aligned_cols=272 Identities=15% Similarity=0.231 Sum_probs=229.9
Q ss_pred ccccCCCeeeEEEec---cCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---ecc
Q psy3710 47 QDFTDGGLGHVEMLF---RCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGL 119 (424)
Q Consensus 47 ~~~~~~~i~~~~~~~---~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~ 119 (424)
...|..+|-.++|+| ++=+|++++ .|+.=.+-+-++|.-+.++. |.+.|++..++.+-...++ |-+
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~-------kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadft 82 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISAS-------KDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFT 82 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEec-------cCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccch
Confidence 445788888888875 455566666 58888888889999999999 9999999999998876665 889
Q ss_pred EEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCE
Q psy3710 120 IKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTR 199 (424)
Q Consensus 120 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 199 (424)
-++||.- ++..++.++. . .-+.+++|+.|.++|++ |+.+..+++||++..+.+...+.+|.+.|..+-|....+.
T Consensus 83 akvw~a~-tgdelhsf~h-k--hivk~~af~~ds~~llt-gg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~ 157 (334)
T KOG0278|consen 83 AKVWDAV-TGDELHSFEH-K--HIVKAVAFSQDSNYLLT-GGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKC 157 (334)
T ss_pred hhhhhhh-hhhhhhhhhh-h--heeeeEEecccchhhhc-cchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCce
Confidence 9999986 7777777753 3 23677899999999998 9999999999999988899999999999999999998899
Q ss_pred EEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcC
Q psy3710 200 LATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ 279 (424)
Q Consensus 200 l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 279 (424)
+++++.|++ ||+||.++++.++++. ...+|+++.+++
T Consensus 158 iLSSadd~t-VRLWD~rTgt~v~sL~------------------------------------------~~s~VtSlEvs~ 194 (334)
T KOG0278|consen 158 ILSSADDKT-VRLWDHRTGTEVQSLE------------------------------------------FNSPVTSLEVSQ 194 (334)
T ss_pred EEeeccCCc-eEEEEeccCcEEEEEe------------------------------------------cCCCCcceeecc
Confidence 999999999 9999999999888774 345788899999
Q ss_pred CCCEEEEEeCCCcEEEEEECCCCceeee-----------eccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccC
Q psy3710 280 TGTRLATASYKGTLIRVFDTGSGQKLNE-----------LRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLP 348 (424)
Q Consensus 280 ~~~~l~~~~~d~~~i~iwd~~~~~~~~~-----------~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 348 (424)
+|++|.++...+ |++||..+...++. +.|+...+++|+.|..++.||..+++.+...
T Consensus 195 dG~ilTia~gss--V~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~---------- 262 (334)
T KOG0278|consen 195 DGRILTIAYGSS--VKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY---------- 262 (334)
T ss_pred CCCEEEEecCce--eEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeec----------
Confidence 998776655444 99999998887775 4578889999999999999999998875431
Q ss_pred ccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCC
Q psy3710 349 KYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSK 396 (424)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~ 396 (424)
.+.|-++|.++.|+|||...++|+.||+|++|...+.
T Consensus 263 -----------nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 263 -----------NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred -----------ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 2456788999999999999999999999999999853
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=218.28 Aligned_cols=275 Identities=17% Similarity=0.260 Sum_probs=223.1
Q ss_pred ccccccCCceEEEEECCCC-CeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCe
Q psy3710 4 GTSSTYKNGLLYAGFNQDQ-GCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNR 81 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~g-~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 81 (424)
..|.||.+.|.|++=+|.. ..+|+|+.|| |+|||+....+......|.|.|..+++.. ..+++++ .|++
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvg-------dDKt 130 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVG-------DDKT 130 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEec-------CCcc
Confidence 4589999999999999997 7889999999 99999999999888999999999998877 6677777 5899
Q ss_pred EEEEECCCCcEEEEEeecCCeEEEEecCCceEEEeeccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeec
Q psy3710 82 VMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGR 161 (424)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (424)
|+.|.++- ..++ ++.+.. .+..+.-+..+..+++ ++
T Consensus 131 vK~wk~~~-~p~~---------------------------------------tilg~s---~~~gIdh~~~~~~FaT-cG 166 (433)
T KOG0268|consen 131 VKQWKIDG-PPLH---------------------------------------TILGKS---VYLGIDHHRKNSVFAT-CG 166 (433)
T ss_pred eeeeeccC-Ccce---------------------------------------eeeccc---cccccccccccccccc-cC
Confidence 99998643 1111 111111 0111222223444554 44
Q ss_pred cCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCC-CEEEEEecCCcEEEEEECCCcceeeEEecc--eeeeeecCCCC
Q psy3710 162 KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTG-TRLATASYKGTLIRVFDTGSGQKLNELRRG--LCVLCPNSNNS 238 (424)
Q Consensus 162 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~ 238 (424)
+ .|.|||.+.. .++..+.--.+.|.++.|+|.. ..|++++.|+. |.+||++++.+++.+... .+.+||+| ..
T Consensus 167 e--~i~IWD~~R~-~Pv~smswG~Dti~svkfNpvETsILas~~sDrs-IvLyD~R~~~Pl~KVi~~mRTN~IswnP-ea 241 (433)
T KOG0268|consen 167 E--QIDIWDEQRD-NPVSSMSWGADSISSVKFNPVETSILASCASDRS-IVLYDLRQASPLKKVILTMRTNTICWNP-EA 241 (433)
T ss_pred c--eeeecccccC-CccceeecCCCceeEEecCCCcchheeeeccCCc-eEEEecccCCccceeeeeccccceecCc-cc
Confidence 3 7899999865 7888888778889999999954 56777879999 999999999988776544 67899999 77
Q ss_pred eEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceee------------
Q psy3710 239 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN------------ 306 (424)
Q Consensus 239 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~------------ 306 (424)
..+++|++|..++.||++.-..+.....+|.+.|.++.|||.|+-+++||.|.+ |+||..+.+....
T Consensus 242 fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks-IRIf~~~~~~SRdiYhtkRMq~V~~ 320 (433)
T KOG0268|consen 242 FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS-IRIFPVNHGHSRDIYHTKRMQHVFC 320 (433)
T ss_pred cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce-EEEeecCCCcchhhhhHhhhheeeE
Confidence 777789999999999999999999999999999999999999999999999999 9999998765432
Q ss_pred -eeccCCcEEEEEeCCCcEEEEEccccccccc
Q psy3710 307 -ELRRDSSYLCVSSDHGTVHVFSVDEAQKINK 337 (424)
Q Consensus 307 -~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 337 (424)
.|+.|.+++++||+|+.|++|.....+++..
T Consensus 321 Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv 352 (433)
T KOG0268|consen 321 VKYSMDSKYIISGSDDGNVRLWKAKASEKLGV 352 (433)
T ss_pred EEEeccccEEEecCCCcceeeeecchhhhcCC
Confidence 3678999999999999999999888776554
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-31 Score=228.08 Aligned_cols=272 Identities=17% Similarity=0.240 Sum_probs=232.2
Q ss_pred EEECCCCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEE
Q psy3710 16 AGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVIC 95 (424)
Q Consensus 16 ~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~ 95 (424)
+.|+ ....||+|....|.+|+..++........+...|+.+.|+++|.+|++.. .+|.|.|||..+.+.+..
T Consensus 183 ldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~-------~~g~v~iwD~~~~k~~~~ 254 (484)
T KOG0305|consen 183 LDWS-SANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGT-------SDGTVQIWDVKEQKKTRT 254 (484)
T ss_pred hhcc-cCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEee-------cCCeEEEEehhhcccccc
Confidence 5677 45689999998999999998887665666688999999999999999888 589999999998888888
Q ss_pred Ee--ecCCeEEEEecCCceEEEe-eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCC
Q psy3710 96 LE--FNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLA 172 (424)
Q Consensus 96 ~~--~~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~ 172 (424)
+. |...|-+++|+......++ ++.|..+|++........+.+|. ..+|.+.|++|+.++|+ |+.|+.+.|||..
T Consensus 255 ~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~--qeVCgLkws~d~~~lAS-GgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 255 LRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHR--QEVCGLKWSPDGNQLAS-GGNDNVVFIWDGL 331 (484)
T ss_pred ccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhccc--ceeeeeEECCCCCeecc-CCCccceEeccCC
Confidence 77 6889999999966555555 99999999984444444456665 55999999999999998 9999999999996
Q ss_pred CCCCCCcccccccCCeEEEEEcc-CCCEEEEEe--cCCcEEEEEECCCcceeeEEecc--eeeeeecCCCCeEEEE-eec
Q psy3710 173 DPERPPLDIAAHEAPLSCIALNQ-TGTRLATAS--YKGTLIRVFDTGSGQKLNELRRG--LCVLCPNSNNSLLAFP-GRK 246 (424)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~d~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~ 246 (424)
.. .+...+..|.+.|.+++|+| ....||+|+ .|+. |++||..+++.+..+..+ ++.+.|++..+.++.+ |..
T Consensus 332 ~~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s 409 (484)
T KOG0305|consen 332 SP-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYS 409 (484)
T ss_pred Cc-cccEEEeccceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCC
Confidence 65 78889999999999999999 456788764 6888 999999999999888755 8889999998777765 667
Q ss_pred CCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCC
Q psy3710 247 SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG 302 (424)
Q Consensus 247 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~ 302 (424)
++.|.||+..+.+ ....+.+|...|..++++|||..+++|+.|.+ +++|++-..
T Consensus 410 ~n~i~lw~~ps~~-~~~~l~gH~~RVl~la~SPdg~~i~t~a~DET-lrfw~~f~~ 463 (484)
T KOG0305|consen 410 ENQITLWKYPSMK-LVAELLGHTSRVLYLALSPDGETIVTGAADET-LRFWNLFDE 463 (484)
T ss_pred CCcEEEEeccccc-eeeeecCCcceeEEEEECCCCCEEEEecccCc-EEeccccCC
Confidence 8899999999855 46677899999999999999999999999999 999998653
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-31 Score=233.25 Aligned_cols=293 Identities=14% Similarity=0.220 Sum_probs=240.8
Q ss_pred cCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEee
Q psy3710 50 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTF 125 (424)
Q Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~ 125 (424)
....+..++|.|....+++.- ..|.|++||.+-+.++..+. |.++|+.++|+|.+-++++ |-.|+||+.
T Consensus 8 kSsRvKglsFHP~rPwILtsl-------HsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSL-------HSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred ccccccceecCCCCCEEEEee-------cCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 356778899999999998877 35999999999999999988 9999999999999988887 779999999
Q ss_pred cCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEec
Q psy3710 126 IQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY 205 (424)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 205 (424)
+ ..+++.++.+|..- +..+.|++.-.+|++ ++.|.+|+||+..++ +++..+.+|+.-|.|..|+|....++++|-
T Consensus 81 k-~rrclftL~GHlDY--VRt~~FHheyPWIlS-ASDDQTIrIWNwqsr-~~iavltGHnHYVMcAqFhptEDlIVSaSL 155 (1202)
T KOG0292|consen 81 K-TRRCLFTLLGHLDY--VRTVFFHHEYPWILS-ASDDQTIRIWNWQSR-KCIAVLTGHNHYVMCAQFHPTEDLIVSASL 155 (1202)
T ss_pred c-cceehhhhccccce--eEEeeccCCCceEEE-ccCCCeEEEEeccCC-ceEEEEecCceEEEeeccCCccceEEEecc
Confidence 7 88999999998844 778899999999998 999999999999997 899999999999999999999999999999
Q ss_pred CCcEEEEEECCCcce-----------------------------eeEEecc---eeeeeecCCCCeEEEEeecCCeEEEE
Q psy3710 206 KGTLIRVFDTGSGQK-----------------------------LNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLV 253 (424)
Q Consensus 206 d~~~i~iwd~~~~~~-----------------------------~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~ 253 (424)
|.+ |++||+..-+. .+.+++| ++..+|+|.-. ++++|++|..|++|
T Consensus 156 DQT-VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlW 233 (1202)
T KOG0292|consen 156 DQT-VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLW 233 (1202)
T ss_pred cce-EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEE
Confidence 999 99999853211 0112222 55667777655 45569999999999
Q ss_pred eCCCCC-CCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeecc------------CCcEEEEEeC
Q psy3710 254 DLADPE-RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR------------DSSYLCVSSD 320 (424)
Q Consensus 254 d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~------------~~~~l~~~~~ 320 (424)
.+...+ -.+.+..+|.+.|.++-|+|..+++++.|.|++ |+|||+...+.+++|+. ..+++ +++.
T Consensus 234 rmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks-irVwDm~kRt~v~tfrrendRFW~laahP~lNLf-AAgH 311 (1202)
T KOG0292|consen 234 RMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS-IRVWDMTKRTSVQTFRRENDRFWILAAHPELNLF-AAGH 311 (1202)
T ss_pred EeccccceeehhhhcccCCcceEEecCccceeEecCCCcc-EEEEecccccceeeeeccCCeEEEEEecCCccee-eeec
Confidence 998655 244567799999999999999999999999999 99999999999999864 34444 4456
Q ss_pred CCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecC
Q psy3710 321 HGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 321 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~ 395 (424)
|+-+.+|.++..++ ++.-+++.|+..- |..|+.+|+..
T Consensus 312 DsGm~VFkleRErp------------------------------------a~~v~~n~LfYvk-d~~i~~~d~~t 349 (1202)
T KOG0292|consen 312 DSGMIVFKLERERP------------------------------------AYAVNGNGLFYVK-DRFIRSYDLRT 349 (1202)
T ss_pred CCceEEEEEcccCc------------------------------------eEEEcCCEEEEEc-cceEEeeeccc
Confidence 77788898876332 3333445555555 78888888875
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=215.05 Aligned_cols=275 Identities=12% Similarity=0.174 Sum_probs=234.5
Q ss_pred cccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCccccccc--------ccCCCeeeEEEeccCceEEEEeCCcCCCc
Q psy3710 7 STYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQD--------FTDGGLGHVEMLFRCNYLALVGGGTHPKY 77 (424)
Q Consensus 7 ~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~~~~~~~ 77 (424)
.+..+.+-|..|||||++|++|+.|| |.+||..+++...... .++..|.++.|+.|...+++.+
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs------- 282 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS------- 282 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC-------
Confidence 35567788999999999999999999 9999998887743322 2678999999999999998877
Q ss_pred CCCeEEEEECCCCcEEEEEe--ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCC
Q psy3710 78 PNNRVMIWDDLKKQVVICLE--FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSN 152 (424)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (424)
.||.|++|.+++|.+++.+. |...|.++.|+.|+..+.+ |.++++.-++ .++.++.+++|.. .+....|++|
T Consensus 283 qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-SGK~LKEfrGHsS--yvn~a~ft~d 359 (508)
T KOG0275|consen 283 QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-SGKCLKEFRGHSS--YVNEATFTDD 359 (508)
T ss_pred cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-cchhHHHhcCccc--cccceEEcCC
Confidence 68999999999999999987 8999999999999865544 8999999997 8999999999884 4777889999
Q ss_pred CCeEEEeeccCCeEEEEeCCCCCCCCcccc--cccCCeEEEEEcc-CCCEEEEEecCCcEEEEEECCCcceeeEEecc--
Q psy3710 153 NSLLAFPGRKSGHVHLVDLADPERPPLDIA--AHEAPLSCIALNQ-TGTRLATASYKGTLIRVFDTGSGQKLNELRRG-- 227 (424)
Q Consensus 153 ~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~-- 227 (424)
|..+++ ++.||+|++|+..+. .+..+++ +...+|.++..-| +...++.+....+ +++.++ .|+.++.+..+
T Consensus 360 G~~iis-aSsDgtvkvW~~Ktt-eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsnt-v~imn~-qGQvVrsfsSGkR 435 (508)
T KOG0275|consen 360 GHHIIS-ASSDGTVKVWHGKTT-ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNT-VYIMNM-QGQVVRSFSSGKR 435 (508)
T ss_pred CCeEEE-ecCCccEEEecCcch-hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCe-EEEEec-cceEEeeeccCCc
Confidence 999998 999999999999987 6666655 3456788888877 4568888988898 999998 67888887643
Q ss_pred ----eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEE
Q psy3710 228 ----LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298 (424)
Q Consensus 228 ----~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd 298 (424)
....+.+|.|..+.+ .++|+.++.|...+++ ...++..|...+..++-+|..+.||+-+.||. +++|.
T Consensus 436 EgGdFi~~~lSpkGewiYc-igED~vlYCF~~~sG~-LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgl-lKLWk 507 (508)
T KOG0275|consen 436 EGGDFINAILSPKGEWIYC-IGEDGVLYCFSVLSGK-LERTLPVHEKDVIGLTHHPHQNLLASYSEDGL-LKLWK 507 (508)
T ss_pred cCCceEEEEecCCCcEEEE-EccCcEEEEEEeecCc-eeeeeecccccccccccCcccchhhhhcccch-hhhcC
Confidence 566778888887766 7899999999999887 35667789999999999999999999999999 99995
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-31 Score=202.01 Aligned_cols=269 Identities=17% Similarity=0.196 Sum_probs=214.3
Q ss_pred eEEEecc-CceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe---ecCCeEEEEecCCc--eEEEe--eccEEEEeecC
Q psy3710 56 HVEMLFR-CNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE---FNAPVKGVRLRRDK--IVVVL--EGLIKVYTFIQ 127 (424)
Q Consensus 56 ~~~~~~~-~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~--~~~~~--~~~i~v~~~~~ 127 (424)
.+.|+|- .++|+++.+...--...|++.|.++..++-+.... -.+.+..++|+++. .+++. ||.+++||+..
T Consensus 13 svqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~ 92 (311)
T KOG0277|consen 13 SVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM 92 (311)
T ss_pred eeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCC
Confidence 4667763 35555543221111125899999987666555544 57899999999865 34433 99999999876
Q ss_pred CCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEcc-CCCEEEEEecC
Q psy3710 128 CPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ-TGTRLATASYK 206 (424)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 206 (424)
...+++.++.|... +.++.|++-.+..+.+++-|++|++|+...+ +.+.++.+|...|...+|+| .++.++++|.|
T Consensus 93 ~s~Pi~~~kEH~~E--V~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd 169 (311)
T KOG0277|consen 93 PSKPIHKFKEHKRE--VYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-NSVQTFNGHNSCIYQAAFSPHIPNLFASASGD 169 (311)
T ss_pred CCcchhHHHhhhhh--eEEeccccccceeEEeeccCCceEeecCCCC-cceEeecCCccEEEEEecCCCCCCeEEEccCC
Confidence 67888888888754 8889998877766666899999999999876 78889999999999999999 57899999999
Q ss_pred CcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCC-CC
Q psy3710 207 GTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT-GT 282 (424)
Q Consensus 207 ~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~ 282 (424)
+. +++||++.......++.+ +.++.++.-+..++++|+.|+.|+.||+++.+.++..+.+|.-.|..++|||. ..
T Consensus 170 ~~-l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 170 GT-LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHAS 248 (311)
T ss_pred ce-EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhh
Confidence 99 999999865444446655 45566778889999999999999999999999999999999999999999995 46
Q ss_pred EEEEEeCCCcEEEEEECCCCceeee-------e------c-cCCcEEEEEeCCCcEEEEEc
Q psy3710 283 RLATASYKGTLIRVFDTGSGQKLNE-------L------R-RDSSYLCVSSDHGTVHVFSV 329 (424)
Q Consensus 283 ~l~~~~~d~~~i~iwd~~~~~~~~~-------~------~-~~~~~l~~~~~d~~i~iw~~ 329 (424)
.||+++.|-+ +||||...+....+ | + -++.++|+.+.|+.++||+-
T Consensus 249 lLaSasYDmT-~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 249 LLASASYDMT-VRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred Hhhhccccce-EEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 8999999999 99999986543221 1 1 26789999999999999984
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=217.85 Aligned_cols=262 Identities=17% Similarity=0.245 Sum_probs=215.2
Q ss_pred CCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe-eccEEEEeecCC
Q psy3710 51 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQC 128 (424)
Q Consensus 51 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~ 128 (424)
..+|.+++ .+...+++.. .|++|+|||.++-.+++.+. |.+.|.|+.|...-.+-++ |.+|++||+. +
T Consensus 197 skgVYClQ--YDD~kiVSGl-------rDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~-t 266 (499)
T KOG0281|consen 197 SKGVYCLQ--YDDEKIVSGL-------RDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVN-T 266 (499)
T ss_pred CCceEEEE--ecchhhhccc-------ccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEecc-C
Confidence 34454444 4555555544 69999999999988888887 8999999999766222233 8999999996 8
Q ss_pred CceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCC--CCcccccccCCeEEEEEccCCCEEEEEecC
Q psy3710 129 PQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER--PPLDIAAHEAPLSCIALNQTGTRLATASYK 206 (424)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 206 (424)
++++.++-.|... +..+.|+ +.++++ ++.|.++.+||+..... ....+.+|.+.|+.+.|+. +++++++.|
T Consensus 267 ge~l~tlihHcea--VLhlrf~--ng~mvt-cSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgD 339 (499)
T KOG0281|consen 267 GEPLNTLIHHCEA--VLHLRFS--NGYMVT-CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGD 339 (499)
T ss_pred CchhhHHhhhcce--eEEEEEe--CCEEEE-ecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCC
Confidence 9999998888754 7777775 557777 99999999999987521 2336779999999999964 699999999
Q ss_pred CcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEE
Q psy3710 207 GTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLAT 286 (424)
Q Consensus 207 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 286 (424)
.+ |++|++.+++.++++.++-..++...-...++++|+.|.+|++||+..+.. .+.+.+|+.-|.++.| |.+.+++
T Consensus 340 RT-ikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~c-LRvLeGHEeLvRciRF--d~krIVS 415 (499)
T KOG0281|consen 340 RT-IKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRCIRF--DNKRIVS 415 (499)
T ss_pred ce-EEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHH-HHHHhchHHhhhheee--cCceeee
Confidence 99 999999999999999999888887777888899999999999999999874 6778899999999999 4579999
Q ss_pred EeCCCcEEEEEECCCCceee-------------------eeccCCcEEEEEeCCCcEEEEEcccccc
Q psy3710 287 ASYKGTLIRVFDTGSGQKLN-------------------ELRRDSSYLCVSSDHGTVHVFSVDEAQK 334 (424)
Q Consensus 287 ~~~d~~~i~iwd~~~~~~~~-------------------~~~~~~~~l~~~~~d~~i~iw~~~~~~~ 334 (424)
|+.||+ |++||+..+.... .+.-|...+++++.|.+|-|||..++-.
T Consensus 416 GaYDGk-ikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 416 GAYDGK-IKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred ccccce-EEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCc
Confidence 999999 9999998764332 1234667899999999999999988644
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.9e-29 Score=197.79 Aligned_cols=272 Identities=14% Similarity=0.262 Sum_probs=212.6
Q ss_pred EEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCC-CeEEEeeccCCeEE
Q psy3710 93 VICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNN-SLLAFPGRKSGHVH 167 (424)
Q Consensus 93 ~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~dg~i~ 167 (424)
.+.+. ....|.++.|+++|..+.+ |..+++||.. .+..++++..+... +-..+|.... ..+.++--.|.+|+
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~-~g~~~~ti~skkyG--~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSL-SGKQVKTINSKKYG--VDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcC-CCceeeEeeccccc--ccEEEEecCCceEEEccCCCCCceE
Confidence 34444 4788999999999977765 7799999996 88888888776644 4444554334 44443233489999
Q ss_pred EEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc-eeeeeecCCCCeEEEEeec
Q psy3710 168 LVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG-LCVLCPNSNNSLLAFPGRK 246 (424)
Q Consensus 168 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 246 (424)
..++.+. +.++.+.+|...|.+++.+|-+..+++++.|++ |++||++..++...+... ..+.+++|.|-.+++ +..
T Consensus 84 yLsl~dN-kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~t-vrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~-~~~ 160 (311)
T KOG1446|consen 84 YLSLHDN-KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKT-VRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFAL-ANG 160 (311)
T ss_pred EEEeecC-ceEEEcCCCCceEEEEEecCCCCeEEecccCCe-EEeeEecCCCCceEEecCCCcceeECCCCcEEEE-ecC
Confidence 9999987 889999999999999999999999999999999 999999988888777654 456677888776666 666
Q ss_pred CCeEEEEeCCCCC-CCCeeec---cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeee---------------
Q psy3710 247 SGHVHLVDLADPE-RPPLDIA---AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE--------------- 307 (424)
Q Consensus 247 dg~i~i~d~~~~~-~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~--------------- 307 (424)
.+.|++||++... .|...+. +.....+.|.|||||++|+.+...+. +++.|.-+|..+.+
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-IYLLDAFDGTVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-EEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence 6699999999863 3444433 44678899999999999999999999 99999999887765
Q ss_pred eccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCc
Q psy3710 308 LRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGS 387 (424)
Q Consensus 308 ~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~ 387 (424)
|+||++++++|+.||+|.+|+++++.++...... +.+++.++.|+|.-..+++ .+..
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~---------------------~~~~~~~~~fnP~~~mf~s--a~s~ 296 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP---------------------NGGPVSCVRFNPRYAMFVS--ASSN 296 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC---------------------CCCCccccccCCceeeeee--cCce
Confidence 4699999999999999999999998875442221 3566778888887555544 4557
Q ss_pred EEEEEec
Q psy3710 388 YYKFMFN 394 (424)
Q Consensus 388 v~~~~~~ 394 (424)
+-+|-..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 7777654
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-28 Score=195.41 Aligned_cols=280 Identities=12% Similarity=0.171 Sum_probs=224.7
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEE
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMI 84 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 84 (424)
+..-.+.|+++.|+++|.+|++++++. ++|||...++.......+.-.+..+.|....+.+...+.. .|.+|+.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk-----~d~tIry 84 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTK-----EDDTIRY 84 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCC-----CCCceEE
Confidence 344578899999999999999877665 9999999999877666666678889999888888777754 4899999
Q ss_pred EECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEee
Q psy3710 85 WDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPG 160 (424)
Q Consensus 85 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (424)
.++.+.+.++-+. |...|.+++.+|-+..+.+ |++|++||++ ..+....+.....+ ..+++|+|-++|+ +
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR-~~~cqg~l~~~~~p----i~AfDp~GLifA~-~ 158 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR-VKKCQGLLNLSGRP----IAAFDPEGLIFAL-A 158 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEec-CCCCceEEecCCCc----ceeECCCCcEEEE-e
Confidence 9999999999999 9999999999998765554 9999999998 56665555544433 3578899999988 7
Q ss_pred ccCCeEEEEeCCCCC-CCCcccc---cccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc------eee
Q psy3710 161 RKSGHVHLVDLADPE-RPPLDIA---AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG------LCV 230 (424)
Q Consensus 161 ~~dg~i~i~d~~~~~-~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~------~~~ 230 (424)
...+.|++||++.-+ .+...+. +...+.+.+.|+|||++++.+...+. +++.|.-+|..+.++... ...
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-IYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-EEEEEccCCcEeeeEeeccCCCCccee
Confidence 777799999998752 3333333 34678899999999999999999999 999999999988888754 234
Q ss_pred eeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCC
Q psy3710 231 LCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 231 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~ 301 (424)
.++.|+++.++. |+.||+|++|+++++.........+..++.++.|+|.-..+++++. . +.+|=...
T Consensus 238 a~ftPds~Fvl~-gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~-l~fw~p~~ 304 (311)
T KOG1446|consen 238 ATFTPDSKFVLS-GSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--N-LVFWLPDE 304 (311)
T ss_pred EEECCCCcEEEE-ecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--e-EEEEeccc
Confidence 677888887775 9999999999999988654444447899999999997666666554 3 77886553
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-30 Score=214.36 Aligned_cols=265 Identities=19% Similarity=0.243 Sum_probs=215.9
Q ss_pred ecCCeEEEEecCCc---eEEEeeccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCC
Q psy3710 98 FNAPVKGVRLRRDK---IVVVLEGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADP 174 (424)
Q Consensus 98 ~~~~v~~~~~~~~~---~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~ 174 (424)
..+.|.+++|+|.. ..+++.-.+.+|+.. .......+.... ..+++.+|-.||+++++ |...|.|++||+.+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~-~~~~~k~~srFk--~~v~s~~fR~DG~Llaa-GD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSV-TRSVRKTFSRFK--DVVYSVDFRSDGRLLAA-GDESGHVKVFDMKSR 100 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecc-hhhhhhhHHhhc--cceeEEEeecCCeEEEc-cCCcCcEEEeccccH
Confidence 46789999999754 455557889999985 555555554444 44788899999999998 999999999996653
Q ss_pred CCCCcccccccCCeEEEEEccCC-CEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEeecCCeE
Q psy3710 175 ERPPLDIAAHEAPLSCIALNQTG-TRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGRKSGHV 250 (424)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i 250 (424)
..++.+.+|+.++..+.|+|++ ..+++|+.|+. +++||+.+......+.++ +.+.+++|....++++|+.||.|
T Consensus 101 -~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v-~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v 178 (487)
T KOG0310|consen 101 -VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKV-VKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKV 178 (487)
T ss_pred -HHHHHHhhccCceeEEEecccCCeEEEecCCCce-EEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence 5777899999999999999965 45677777777 999999998875566666 78889999999999999999999
Q ss_pred EEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceee-e------------eccCCcEEEE
Q psy3710 251 HLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN-E------------LRRDSSYLCV 317 (424)
Q Consensus 251 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~-~------------~~~~~~~l~~ 317 (424)
++||.+.....+..+ .|..+|..+.+-|.|..+++++... |++||+.+|..+. . +..++..|++
T Consensus 179 rl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn~--vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS 255 (487)
T KOG0310|consen 179 RLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGNS--VKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLS 255 (487)
T ss_pred EEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCCe--EEEEEecCCceehhhhhcccceEEEEEeecCCceEee
Confidence 999999876445555 7999999999999999999998877 9999999654432 1 3457899999
Q ss_pred EeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 318 SSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 318 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
++-|+.+++||+.+.+.+... .=.+++.+++.+|+++.++.|..||.+.+-+..
T Consensus 256 ~sLD~~VKVfd~t~~Kvv~s~-----------------------~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 256 GSLDRHVKVFDTTNYKVVHSW-----------------------KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred cccccceEEEEccceEEEEee-----------------------ecccceeeEEecCCCceEEEecccceeeeehhh
Confidence 999999999998876543321 113678999999999999999999998887443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-29 Score=242.82 Aligned_cols=289 Identities=16% Similarity=0.194 Sum_probs=216.0
Q ss_pred CCeEEEEECCCCcEEEEEe------ecCCeEEEEecCCceEEEe---eccEEEEeecCC---Cc----eeEEEeeCCCCC
Q psy3710 79 NNRVMIWDDLKKQVVICLE------FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQC---PQ----QLHVFETNPNPK 142 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~---~~----~~~~~~~~~~~~ 142 (424)
+|.+++|+..+.+....+. |.+.|.+++|+|++.++++ |+.|++|+.... .. +...+.. ..
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~---~~ 533 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS---RS 533 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc---cC
Confidence 5667888876655543332 6788999999999988776 899999997421 11 1122222 23
Q ss_pred eeEEEeecCC-CCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEcc-CCCEEEEEecCCcEEEEEECCCcce
Q psy3710 143 GLCVLCPNSN-NSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ-TGTRLATASYKGTLIRVFDTGSGQK 220 (424)
Q Consensus 143 ~~~~~~~~~~-~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~~i~iwd~~~~~~ 220 (424)
.+.+++|++. +.+|++ ++.||.|++||+.++ +.+..+.+|.+.|.+++|+| ++.+|++++.|+. |++||++++..
T Consensus 534 ~v~~l~~~~~~~~~las-~~~Dg~v~lWd~~~~-~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~-v~iWd~~~~~~ 610 (793)
T PLN00181 534 KLSGICWNSYIKSQVAS-SNFEGVVQVWDVARS-QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGS-VKLWSINQGVS 610 (793)
T ss_pred ceeeEEeccCCCCEEEE-EeCCCeEEEEECCCC-eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCE-EEEEECCCCcE
Confidence 4677888764 567776 999999999999976 67778889999999999997 7889999999999 99999999988
Q ss_pred eeEEecc--eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEE
Q psy3710 221 LNELRRG--LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298 (424)
Q Consensus 221 ~~~~~~~--~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd 298 (424)
+..+..+ +..+.+.+....++++|+.||.|++||+++...+...+.+|...|.++.|. ++.+|++++.|+. |++||
T Consensus 611 ~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd 688 (793)
T PLN00181 611 IGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWD 688 (793)
T ss_pred EEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEe
Confidence 8777654 556677666666677799999999999998766666777999999999997 6778889999998 88888
Q ss_pred CCCCceeeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCe
Q psy3710 299 TGSGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNS 378 (424)
Q Consensus 299 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 378 (424)
+..+.. +... .. +..+..|...+..++|+|++++
T Consensus 689 ~~~~~~-------------~~~~-----------~~----------------------l~~~~gh~~~i~~v~~s~~~~~ 722 (793)
T PLN00181 689 LSMSIS-------------GINE-----------TP----------------------LHSFMGHTNVKNFVGLSVSDGY 722 (793)
T ss_pred CCCCcc-------------ccCC-----------cc----------------------eEEEcCCCCCeeEEEEcCCCCE
Confidence 764310 0000 00 1123344556778899999999
Q ss_pred EEEEeccCcEEEEEecCCccee-----------------eeeehhhheecCCCceeeEEE
Q psy3710 379 IIVICADGSYYKFMFNSKGECW-----------------RDVYIQFLEMTNDSNLLSCIE 421 (424)
Q Consensus 379 l~~~~~dg~v~~~~~~~~~~~~-----------------~~~~~~~~~~~~d~~~l~~~~ 421 (424)
|++|+.||.|++|+........ .......+.++|+++.|+++.
T Consensus 723 lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~ 782 (793)
T PLN00181 723 IATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAAN 782 (793)
T ss_pred EEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEec
Confidence 9999999999999975321110 012345677899999998874
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=204.78 Aligned_cols=275 Identities=15% Similarity=0.202 Sum_probs=223.5
Q ss_pred cccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCce---EEEEeCCcCCCcCCCeE
Q psy3710 7 STYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNY---LALVGGGTHPKYPNNRV 82 (424)
Q Consensus 7 ~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---l~~~~~~~~~~~~d~~i 82 (424)
.-|++.|.++.-. ++.+.+|+-|| +++||.. |+.......|.+++..++|.-.... +++++ .|.++
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas-------~Dqtl 171 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS-------MDQTL 171 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEec-------CCceE
Confidence 3588899998887 67899999999 9999964 6666678889999998888655443 77776 68999
Q ss_pred EEEECCCCcEEEEE-----eecCCeEEEEecCCceEEEe---eccEEEEeecC------------------------CCc
Q psy3710 83 MIWDDLKKQVVICL-----EFNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQ------------------------CPQ 130 (424)
Q Consensus 83 ~iwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~------------------------~~~ 130 (424)
++|..+.++..-.. .|...|.++...+++..+++ |..|.+|+... ...
T Consensus 172 ~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 172 RLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred EEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence 99998877654322 38899999999999987776 99999999321 112
Q ss_pred eeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEE
Q psy3710 131 QLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLI 210 (424)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i 210 (424)
++..+.+|..+ +.++.|++ ...+++ ++.|.+|+.||+.++ .....+. -...+.++..+|..++|++|+.|.. +
T Consensus 252 P~vtl~GHt~~--Vs~V~w~d-~~v~yS-~SwDHTIk~WDletg-~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~-i 324 (423)
T KOG0313|consen 252 PLVTLEGHTEP--VSSVVWSD-ATVIYS-VSWDHTIKVWDLETG-GLKSTLT-TNKSLNCISYSPLSKLLASGSSDRH-I 324 (423)
T ss_pred ceEEecccccc--eeeEEEcC-CCceEe-ecccceEEEEEeecc-cceeeee-cCcceeEeecccccceeeecCCCCc-e
Confidence 44556777755 77788877 555555 999999999999997 4444443 3567899999999999999999999 9
Q ss_pred EEEECCCcc---eeeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEE
Q psy3710 211 RVFDTGSGQ---KLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRL 284 (424)
Q Consensus 211 ~iwd~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 284 (424)
++||.+++. ..+++.+| +..+.++|.+.+++++|+.|+++++||+++...++..+.+|...|.++.|. ++..+
T Consensus 325 rl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~I 403 (423)
T KOG0313|consen 325 RLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLI 403 (423)
T ss_pred eecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceE
Confidence 999998763 34556666 678899999999999999999999999999998899999999999999997 45699
Q ss_pred EEEeCCCcEEEEEECC
Q psy3710 285 ATASYKGTLIRVFDTG 300 (424)
Q Consensus 285 ~~~~~d~~~i~iwd~~ 300 (424)
++|+.|.+ |+++.-.
T Consensus 404 vSGGaD~~-l~i~~~~ 418 (423)
T KOG0313|consen 404 VSGGADNK-LRIFKGS 418 (423)
T ss_pred EeccCcce-EEEeccc
Confidence 99999999 9998654
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=203.83 Aligned_cols=265 Identities=17% Similarity=0.292 Sum_probs=208.4
Q ss_pred cCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEec-CCc---eEEEe--eccEEE
Q psy3710 50 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLR-RDK---IVVVL--EGLIKV 122 (424)
Q Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~-~~~---~~~~~--~~~i~v 122 (424)
|+.-|.++... ++.+++.+ .||.+++||. .|+....+. |.+++.++++. ++. .++.. |.++++
T Consensus 104 hdDWVSsv~~~--~~~Iltgs-------YDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~L 173 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGS-------YDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRL 173 (423)
T ss_pred chhhhhhhccc--CceEEEee-------cCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEE
Confidence 56666666666 67777777 5899999996 678887777 89999988774 332 23333 899999
Q ss_pred EeecCCCc---eeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCC------------------------C
Q psy3710 123 YTFIQCPQ---QLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADP------------------------E 175 (424)
Q Consensus 123 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~------------------------~ 175 (424)
|.++.... .+....+|. ..+-+++..+++..+++ |+.|.+|.+|+..+. +
T Consensus 174 w~~~~~~~~~~~~~~~~GHk--~~V~sVsv~~sgtr~~S-gS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 174 WKWNVGENKVKALKVCRGHK--RSVDSVSVDSSGTRFCS-GSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred EEecCchhhhhHHhHhcccc--cceeEEEecCCCCeEEe-ecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 99863322 223334565 44778888999999998 999999999993211 1
Q ss_pred CCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc--eeeeeecCCCCeEEEEeecCCeEEEE
Q psy3710 176 RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG--LCVLCPNSNNSLLAFPGRKSGHVHLV 253 (424)
Q Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~dg~i~i~ 253 (424)
.++..+.+|..+|.++.|++ ...+++++.|.+ |+.||+.++..+.++..+ ..++..+|. ..++++|+.|..|++|
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHT-Ik~WDletg~~~~~~~~~ksl~~i~~~~~-~~Ll~~gssdr~irl~ 327 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHT-IKVWDLETGGLKSTLTTNKSLNCISYSPL-SKLLASGSSDRHIRLW 327 (423)
T ss_pred CceEEecccccceeeEEEcC-CCceEeecccce-EEEEEeecccceeeeecCcceeEeecccc-cceeeecCCCCceeec
Confidence 34557889999999999998 678999999999 999999999999888766 566666774 4556669999999999
Q ss_pred eCCCCC--CCCeeeccCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEECCCCc-eeeeecc-----------CCcEEEEE
Q psy3710 254 DLADPE--RPPLDIAAHEAPLSCIALNQT-GTRLATASYKGTLIRVFDTGSGQ-KLNELRR-----------DSSYLCVS 318 (424)
Q Consensus 254 d~~~~~--~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd~~~~~-~~~~~~~-----------~~~~l~~~ 318 (424)
|.+++. .+...+.+|++.|.++.|+|. ...|++++.|++ +++||+++.+ ++..+.. ++..+++|
T Consensus 328 DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSG 406 (423)
T KOG0313|consen 328 DPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-VKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSG 406 (423)
T ss_pred CCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe-EEEEEeccCCCcceeeccCCceEEEEeccCCceEEec
Confidence 999875 344577899999999999994 567899999999 9999999877 7777654 46689999
Q ss_pred eCCCcEEEEEccc
Q psy3710 319 SDHGTVHVFSVDE 331 (424)
Q Consensus 319 ~~d~~i~iw~~~~ 331 (424)
+.|.+|+|+.-..
T Consensus 407 GaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 407 GADNKLRIFKGSP 419 (423)
T ss_pred cCcceEEEecccc
Confidence 9999999987543
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=225.67 Aligned_cols=278 Identities=17% Similarity=0.238 Sum_probs=235.2
Q ss_pred cCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCccccc-ccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEE
Q psy3710 9 YKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKER-QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWD 86 (424)
Q Consensus 9 h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd 86 (424)
|...+.+..|. +.++++++.+. |++|+..++..... ...|.+.+..+++...++.+++.+ .|.++++||
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS-------~D~t~rvWd 277 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGS-------TDKTERVWD 277 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEe-------cCCcEEeEe
Confidence 67778888888 44788888888 99999999988666 888999999999998788888887 689999999
Q ss_pred CCCCcEEEEEe-ecCCeEEEEecCCceEEEe-eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCC
Q psy3710 87 DLKKQVVICLE-FNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSG 164 (424)
Q Consensus 87 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg 164 (424)
..+|++...+. |.+.+.++...+....-++ |.+|++|++. ++..+..+.+|..+ |.++..+ +.++++ |+.|+
T Consensus 278 ~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~-n~~~l~l~~~h~~~--V~~v~~~--~~~lvs-gs~d~ 351 (537)
T KOG0274|consen 278 CSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVT-NGACLNLLRGHTGP--VNCVQLD--EPLLVS-GSYDG 351 (537)
T ss_pred cCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEecc-CcceEEEecccccc--EEEEEec--CCEEEE-EecCc
Confidence 99999999999 8999999998877666655 9999999996 88999999887755 7777665 677777 99999
Q ss_pred eEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCc-ceeeEEecceeeeeecCCCCeEEEE
Q psy3710 165 HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG-QKLNELRRGLCVLCPNSNNSLLAFP 243 (424)
Q Consensus 165 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (424)
+|.+||+.++ +.++.+.+|...|.++.+.+. ..+++|+.|+. |++||+++. +++..+..+...+.-..-...++++
T Consensus 352 ~v~VW~~~~~-~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs 428 (537)
T KOG0274|consen 352 TVKVWDPRTG-KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-IKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVS 428 (537)
T ss_pred eEEEEEhhhc-eeeeeecCCcceEEEEEecCc-ceEEeeeeccc-eEeecCCchhhhhhhhcCCcccccccccccceeEe
Confidence 9999999987 899999999999999988765 89999999999 999999999 9999998885554333334556677
Q ss_pred eecCCeEEEEeCCCCCCCCeeecc-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeee
Q psy3710 244 GRKSGHVHLVDLADPERPPLDIAA-HEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNEL 308 (424)
Q Consensus 244 ~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~ 308 (424)
++.|++|++||..+++. ...+.+ |...|..+++. ...+++++.|+. +++||+++++....+
T Consensus 429 ~~aD~~Ik~WD~~~~~~-~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~-~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 429 SSADGTIKLWDAEEGEC-LRTLEGRHVGGVSALALG--KEEILCSSDDGS-VKLWDLRSGTLIRTL 490 (537)
T ss_pred ccccccEEEeecccCce-eeeeccCCcccEEEeecC--cceEEEEecCCe-eEEEecccCchhhhh
Confidence 99999999999999875 445555 67888888876 468888899999 999999998887654
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=212.10 Aligned_cols=290 Identities=16% Similarity=0.230 Sum_probs=217.9
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCccc-----ccccccCCCeeeEEEeccCceEEEEeCCcCCCcCC
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEK-----ERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPN 79 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d 79 (424)
+.+|+..|.++++.|.|-+|++|+-|. |++||....... .........|..++|++.++.++++++.
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~------- 235 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS------- 235 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC-------
Confidence 789999999999999999999999888 999998654331 1122245688999999999999999864
Q ss_pred CeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEeeccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEe
Q psy3710 80 NRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFP 159 (424)
Q Consensus 80 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (424)
...+|+|- .|..+.++. .|.-+|-|+..+ ++|. ..+.+-+|+|+.+-.+.+
T Consensus 236 aqakl~DR-dG~~~~e~~-------------------KGDQYI~Dm~nT-------KGHi--a~lt~g~whP~~k~~FlT 286 (641)
T KOG0772|consen 236 AQAKLLDR-DGFEIVEFS-------------------KGDQYIRDMYNT-------KGHI--AELTCGCWHPDNKEEFLT 286 (641)
T ss_pred cceeEEcc-CCceeeeee-------------------ccchhhhhhhcc-------CCce--eeeeccccccCcccceEE
Confidence 68888885 333332221 233334444311 2333 447788999998877777
Q ss_pred eccCCeEEEEeCCCCCCCCcccc-----cccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeec
Q psy3710 160 GRKSGHVHLVDLADPERPPLDIA-----AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPN 234 (424)
Q Consensus 160 ~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 234 (424)
++.||++++||+...+.....+. +..-+++.++|+|+|+.|++|+.||. |.+|+..+...--.
T Consensus 287 ~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~~v~p~----------- 354 (641)
T KOG0772|consen 287 CSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSRTVRPV----------- 354 (641)
T ss_pred ecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc-eeeeecCCcccccc-----------
Confidence 99999999999997644333332 33557899999999999999999999 99999854321111
Q ss_pred CCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCc-eee-----
Q psy3710 235 SNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEA--PLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ-KLN----- 306 (424)
Q Consensus 235 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~-~~~----- 306 (424)
...-.+|.. .|+|++||+||++|++-+.|++ +++||++..+ ++.
T Consensus 355 ---------------------------~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWDLrq~kkpL~~~tgL 406 (641)
T KOG0772|consen 355 ---------------------------MKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWDLRQFKKPLNVRTGL 406 (641)
T ss_pred ---------------------------eEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeeeccccccchhhhcCC
Confidence 111226766 8999999999999999999999 9999998754 333
Q ss_pred ---------eeccCCcEEEEEeC------CCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEE
Q psy3710 307 ---------ELRRDSSYLCVSSD------HGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICA 371 (424)
Q Consensus 307 ---------~~~~~~~~l~~~~~------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (424)
-|+|+.+++++|+. .|++.+||..+.+.+.+ +......|..|.
T Consensus 407 ~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k----------------------i~i~~aSvv~~~ 464 (641)
T KOG0772|consen 407 PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK----------------------IDISTASVVRCL 464 (641)
T ss_pred CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE----------------------ecCCCceEEEEe
Confidence 27899999999864 57899999888665443 333455678899
Q ss_pred EecCCCeEEEEeccCcEEEEEe
Q psy3710 372 FGADSNSIIVICADGSYYKFMF 393 (424)
Q Consensus 372 ~s~~~~~l~~~~~dg~v~~~~~ 393 (424)
|+|.-+.|++|+.||++++|-=
T Consensus 465 WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 465 WHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred ecchhhheeeecCCCceEEEEC
Confidence 9999999999999999999853
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=195.86 Aligned_cols=281 Identities=17% Similarity=0.204 Sum_probs=213.4
Q ss_pred ccccccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCccccc----ccccCCCeeeEEEeccCceEEEEeCCcCCC
Q psy3710 2 NLGTSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKER----QDFTDGGLGHVEMLFRCNYLALVGGGTHPK 76 (424)
Q Consensus 2 ~~~~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 76 (424)
++..|.+|.+.|++++|+.||++||+.++|+ |+||+++....... ...+-+.-+.+.|+||.+.+++....
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~---- 153 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKR---- 153 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEcc----
Confidence 5677999999999999999999999999888 99999987654221 22234466789999999877766543
Q ss_pred cCCCeEEEEECCC---CcEEE--------EEe--ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCC
Q psy3710 77 YPNNRVMIWDDLK---KQVVI--------CLE--FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPN 140 (424)
Q Consensus 77 ~~d~~i~iwd~~~---~~~~~--------~~~--~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~ 140 (424)
..++++|.+.. |.... .+. |.-.+..+-...++.++.+ |..|.+|+++ ++.+..+.....
T Consensus 154 --g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk--Gq~L~~idtnq~ 229 (420)
T KOG2096|consen 154 --GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK--GQLLQSIDTNQS 229 (420)
T ss_pred --CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC--Cceeeeeccccc
Confidence 47899997643 22111 111 3455666777778888876 8899999995 788888776653
Q ss_pred CCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCC-------CCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEE
Q psy3710 141 PKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE-------RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVF 213 (424)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iw 213 (424)
. -...+.+|+|+++++ ++..-.|++|.+--.+ ..+..+.+|...|..++|+|+...+++.+.||+ +++|
T Consensus 230 ~--n~~aavSP~GRFia~-~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriw 305 (420)
T KOG2096|consen 230 S--NYDAAVSPDGRFIAV-SGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIW 305 (420)
T ss_pred c--ccceeeCCCCcEEEE-ecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEe
Confidence 3 334567999999998 8888899999864221 234578899999999999999999999999999 9999
Q ss_pred ECCCc-------ceeeEEec-------ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcC
Q psy3710 214 DTGSG-------QKLNELRR-------GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ 279 (424)
Q Consensus 214 d~~~~-------~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 279 (424)
|+.-. +.+++... ....+.++|.+..+++ +....+++|..++++.....-..|...|.+++|++
T Consensus 306 dtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~--s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~ 383 (420)
T KOG2096|consen 306 DTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV--SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS 383 (420)
T ss_pred eccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe--ecCCceEEEEcccCccchhHHHhhcCceeeEEecC
Confidence 98532 22233221 1446788999998886 55667999999988765555568999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEE
Q psy3710 280 TGTRLATASYKGTLIRVFD 298 (424)
Q Consensus 280 ~~~~l~~~~~d~~~i~iwd 298 (424)
+|+++++++..- ++++.
T Consensus 384 ~g~~~atcGdr~--vrv~~ 400 (420)
T KOG2096|consen 384 DGKYIATCGDRY--VRVIR 400 (420)
T ss_pred CCcEEeeeccee--eeeec
Confidence 999999988654 67665
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=216.75 Aligned_cols=316 Identities=18% Similarity=0.257 Sum_probs=247.5
Q ss_pred ccccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeE
Q psy3710 4 GTSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 82 (424)
.+++++.+.|+++.-+|-=..+|.|..+| |.|+++..++.+.......+.|+.++|..||+.++.++.. .|.+
T Consensus 196 ~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~------~G~m 269 (910)
T KOG1539|consen 196 YTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS------NGDM 269 (910)
T ss_pred EEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccC------CceE
Confidence 34778999999999999999999999999 9999999999987777767999999999999998877754 5999
Q ss_pred EEEECCCCcEEEEEe--ecCCeEEEEecCCceEEEe---eccEEEEeecC-CC--cee----------------------
Q psy3710 83 MIWDDLKKQVVICLE--FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQ-CP--QQL---------------------- 132 (424)
Q Consensus 83 ~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~-~~--~~~---------------------- 132 (424)
.+||++..+.+..+. |.+.|....|.|...++.+ |+.+++|-.+. ++ +.+
T Consensus 270 ~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ 349 (910)
T KOG1539|consen 270 AFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHF 349 (910)
T ss_pred EEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEE
Confidence 999998877766554 5555655555555444433 44433332210 00 000
Q ss_pred --------------------------------------------------------------------------------
Q psy3710 133 -------------------------------------------------------------------------------- 132 (424)
Q Consensus 133 -------------------------------------------------------------------------------- 132 (424)
T Consensus 350 ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~ 429 (910)
T KOG1539|consen 350 ILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNF 429 (910)
T ss_pred EEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEec
Confidence
Q ss_pred -------EEEeeC---CCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCccc---ccccCCeEEEEEccCCCE
Q psy3710 133 -------HVFETN---PNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDI---AAHEAPLSCIALNQTGTR 199 (424)
Q Consensus 133 -------~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~ 199 (424)
+.++.. .....+.+++.++.|++.+. |+..|.|.+|+++++ .....+ ..|.++|++++...-++.
T Consensus 430 ~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~I-G~S~G~Id~fNmQSG-i~r~sf~~~~ah~~~V~gla~D~~n~~ 507 (910)
T KOG1539|consen 430 RNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFI-GYSKGTIDRFNMQSG-IHRKSFGDSPAHKGEVTGLAVDGTNRL 507 (910)
T ss_pred cCcccccEEecCccccccCcceEEEEEeccCceEEE-eccCCeEEEEEcccC-eeecccccCccccCceeEEEecCCCce
Confidence 000000 01134567778888998888 999999999999987 555566 589999999999998999
Q ss_pred EEEEecCCcEEEEEECCCcceeeEEecc--eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEE
Q psy3710 200 LATASYKGTLIRVFDTGSGQKLNELRRG--LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIAL 277 (424)
Q Consensus 200 l~~~~~d~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 277 (424)
+++++.+|- +++||..+...+..+..+ +..+..+.....+++ +..|-.|+++|..+.+ ..+.+.+|.+.|++++|
T Consensus 508 ~vsa~~~Gi-lkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~-~~ddf~I~vvD~~t~k-vvR~f~gh~nritd~~F 584 (910)
T KOG1539|consen 508 LVSAGADGI-LKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAI-ALDDFSIRVVDVVTRK-VVREFWGHGNRITDMTF 584 (910)
T ss_pred EEEccCcce-EEEEecCCcceeeeeccCCCcceeeeeehhhhhhh-hcCceeEEEEEchhhh-hhHHhhccccceeeeEe
Confidence 999999999 999999988877777654 444555555555554 8889999999999865 56778899999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEECCCCceee-----------eeccCCcEEEEEeCC-CcEEEEEccc
Q psy3710 278 NQTGTRLATASYKGTLIRVFDTGSGQKLN-----------ELRRDSSYLCVSSDH-GTVHVFSVDE 331 (424)
Q Consensus 278 ~~~~~~l~~~~~d~~~i~iwd~~~~~~~~-----------~~~~~~~~l~~~~~d-~~i~iw~~~~ 331 (424)
||||++|++++.|++ ||+||+.++.++. +|+|+|.+||+...| .-|++|.=.+
T Consensus 585 S~DgrWlisasmD~t-Ir~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 585 SPDGRWLISASMDST-IRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CCCCcEEEEeecCCc-EEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 999999999999999 9999999998876 468999999999988 6799997544
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=212.01 Aligned_cols=274 Identities=12% Similarity=0.158 Sum_probs=223.6
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcc--cccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCe
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKE--KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNR 81 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 81 (424)
.+..|.+.|+.+.|-++...|++|+.+. |++|++...+. ........++++.+.+.+++..++.++ .|+.
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas-------~d~~ 242 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAAS-------NDKN 242 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeec-------CCCc
Confidence 3778999999999999988999988888 99999887763 444555678899999999999998888 6899
Q ss_pred EEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEE
Q psy3710 82 VMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLA 157 (424)
Q Consensus 82 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (424)
+++|++...+...++. |.+.|.++.|......+++ |.+|+.||+. ...+..++-... .+..+..+ ...++
T Consensus 243 ~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~-k~~C~kt~l~~S---~cnDI~~~--~~~~~ 316 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ-KAYCSKTVLPGS---QCNDIVCS--ISDVI 316 (459)
T ss_pred eeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhh-hhheeccccccc---cccceEec--ceeee
Confidence 9999999999999998 9999999999877764443 8999999996 455544432222 12233332 33344
Q ss_pred EeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc-------eee
Q psy3710 158 FPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG-------LCV 230 (424)
Q Consensus 158 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~-------~~~ 230 (424)
+|..|++|++||.++. .+......+ +.|+++..+++|..+.+++.|.+ +.+.|+++.+....+... ...
T Consensus 317 -SgH~DkkvRfwD~Rs~-~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdt-l~viDlRt~eI~~~~sA~g~k~asDwtr 392 (459)
T KOG0288|consen 317 -SGHFDKKVRFWDIRSA-DKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDT-LKVIDLRTKEIRQTFSAEGFKCASDWTR 392 (459)
T ss_pred -ecccccceEEEeccCC-ceeeEeecC-cceeeEeeccCCeEEeeecCCCc-eeeeecccccEEEEeeccccccccccce
Confidence 4999999999999986 566666665 48999999999999999999999 999999999888877643 567
Q ss_pred eeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy3710 231 LCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEA-PLSCIALNQTGTRLATASYKGTLIRVF 297 (424)
Q Consensus 231 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~~i~iw 297 (424)
++|+|++.++++ |+.||.|+||++.+++.....-..+.. .|++++|+|.|..|++++.++. +.+|
T Consensus 393 vvfSpd~~YvaA-GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~-v~lW 458 (459)
T KOG0288|consen 393 VVFSPDGSYVAA-GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKA-VTLW 458 (459)
T ss_pred eEECCCCceeee-ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcc-eEec
Confidence 899999998887 999999999999998854433333333 7999999999999999999999 9998
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-29 Score=191.33 Aligned_cols=258 Identities=16% Similarity=0.201 Sum_probs=206.1
Q ss_pred ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCC
Q psy3710 98 FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADP 174 (424)
Q Consensus 98 ~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~ 174 (424)
|...+.+++|+.+|..+++ |+++.+|++. ..+.........+...+-.++|+|...-++++++.|.+|++||.+.+
T Consensus 19 ~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e-~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGTKLASGSFDKTVSVWNLE-RDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred hhhcceEEEEcccCceeeecccCCceEEEEec-chhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 6789999999999988886 9999999997 44554444433333446667777765555555999999999999987
Q ss_pred CCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc--eeeeeecCCCCeEEEEeecCCeEEE
Q psy3710 175 ERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG--LCVLCPNSNNSLLAFPGRKSGHVHL 252 (424)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~dg~i~i 252 (424)
++........+ -..+.|+|+|++++.++.|.. |...|.++.+.+.+.+.. ..-++++.++..+++ ....|.|.|
T Consensus 98 -k~~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~-it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Ffl-t~GlG~v~I 173 (313)
T KOG1407|consen 98 -KCTARIETKGE-NINITWSPDGEYIAVGNKDDR-ITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFL-TNGLGCVEI 173 (313)
T ss_pred -cEEEEeeccCc-ceEEEEcCCCCEEEEecCccc-EEEEEecccceeehhcccceeeeeeecCCCCEEEE-ecCCceEEE
Confidence 66665554333 456789999999999999999 999999999888766544 566778754444444 667799999
Q ss_pred EeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeee------------eccCCcEEEEEeC
Q psy3710 253 VDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE------------LRRDSSYLCVSSD 320 (424)
Q Consensus 253 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~------------~~~~~~~l~~~~~ 320 (424)
.....-+ ++..+++|.....|+.|+|+|+++|+|+.|.. +.+||++..-+++. |+.+|++||+|++
T Consensus 174 LsypsLk-pv~si~AH~snCicI~f~p~GryfA~GsADAl-vSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSE 251 (313)
T KOG1407|consen 174 LSYPSLK-PVQSIKAHPSNCICIEFDPDGRYFATGSADAL-VSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASE 251 (313)
T ss_pred Eeccccc-cccccccCCcceEEEEECCCCceEeeccccce-eeccChhHhhhheeeccccCceEEEEeccCcceeeccCc
Confidence 9988654 67888899999999999999999999999999 99999987666553 5679999999999
Q ss_pred CCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEecc
Q psy3710 321 HGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICAD 385 (424)
Q Consensus 321 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 385 (424)
|..|-|=++++|.++-+++ +.++...++|+|....||.+++|
T Consensus 252 Dh~IDIA~vetGd~~~eI~-----------------------~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 252 DHFIDIAEVETGDRVWEIP-----------------------CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cceEEeEecccCCeEEEee-----------------------ccCCceeEEecCCCceeeEEecC
Confidence 9999999999998764422 24566789999999999988875
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=205.38 Aligned_cols=262 Identities=16% Similarity=0.224 Sum_probs=226.5
Q ss_pred CCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe---------ecCCeEEEEecCCceEEEe---ec
Q psy3710 51 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE---------FNAPVKGVRLRRDKIVVVL---EG 118 (424)
Q Consensus 51 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~---~~ 118 (424)
...+.+..|+||++++++.+ .||-|.+||..+|+..+.++ +..+|.|+.|+.|...+++ ||
T Consensus 213 KSh~EcA~FSPDgqyLvsgS-------vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGS-------VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred ccchhheeeCCCCceEeecc-------ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence 45677889999999999888 79999999999998876543 4678999999999999887 99
Q ss_pred cEEEEeecCCCceeEEEe-eCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCC
Q psy3710 119 LIKVYTFIQCPQQLHVFE-TNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTG 197 (424)
Q Consensus 119 ~i~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 197 (424)
.|++|.+. ++.+++.+. .|. .+++++.|+.|+..+++ ++.|.++++--+.++ +.++.+++|...|+...|.++|
T Consensus 286 kIKvWri~-tG~ClRrFdrAHt--kGvt~l~FSrD~SqiLS-~sfD~tvRiHGlKSG-K~LKEfrGHsSyvn~a~ft~dG 360 (508)
T KOG0275|consen 286 KIKVWRIE-TGQCLRRFDRAHT--KGVTCLSFSRDNSQILS-ASFDQTVRIHGLKSG-KCLKEFRGHSSYVNEATFTDDG 360 (508)
T ss_pred cEEEEEEe-cchHHHHhhhhhc--cCeeEEEEccCcchhhc-ccccceEEEeccccc-hhHHHhcCccccccceEEcCCC
Confidence 99999997 899998887 444 56999999999999998 999999999999998 8999999999999999999999
Q ss_pred CEEEEEecCCcEEEEEECCCcceeeEEecc-----eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec---cCC
Q psy3710 198 TRLATASYKGTLIRVFDTGSGQKLNELRRG-----LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA---AHE 269 (424)
Q Consensus 198 ~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~---~~~ 269 (424)
..+++++.||+ |++|+..+.+++.+++.. +..+-..|.+..-++.+...++++|.++... .++.+. ...
T Consensus 361 ~~iisaSsDgt-vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ--vVrsfsSGkREg 437 (508)
T KOG0275|consen 361 HHIISASSDGT-VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ--VVRSFSSGKREG 437 (508)
T ss_pred CeEEEecCCcc-EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce--EEeeeccCCccC
Confidence 99999999999 999999999999998754 5566667777766666899999999998753 233332 234
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeee------------ccCCcEEEEEeCCCcEEEEE
Q psy3710 270 APLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNEL------------RRDSSYLCVSSDHGTVHVFS 328 (424)
Q Consensus 270 ~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~------------~~~~~~l~~~~~d~~i~iw~ 328 (424)
+...+...+|.|.++++.+.|+. ++.|.+.+|+...++ .|+.+.+|+-+.||.+++|.
T Consensus 438 GdFi~~~lSpkGewiYcigED~v-lYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 438 GDFINAILSPKGEWIYCIGEDGV-LYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CceEEEEecCCCcEEEEEccCcE-EEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 55677789999999999999999 999999999887765 37888999999999999995
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=210.21 Aligned_cols=268 Identities=20% Similarity=0.318 Sum_probs=226.3
Q ss_pred CCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeec
Q psy3710 51 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFI 126 (424)
Q Consensus 51 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~ 126 (424)
...|.+++|+|...+=+.+.+ ...+.||+..+....+++. +...+.++.|..||.+++. .|.|+|||++
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-------S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-------SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred cCcceeEecCCCCCCceEEec-------ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 567999999997755444442 3799999999888888777 8999999999999999987 7999999975
Q ss_pred CCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccC-CCEEEEEec
Q psy3710 127 QCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT-GTRLATASY 205 (424)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~ 205 (424)
+...+..+..|..| +....|+|++..++++|+.|+.+++||+.+. .....+.+|++.|.+.+|+|. +..+++|+.
T Consensus 99 -~r~iLR~~~ah~ap--v~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a-~v~~~l~~htDYVR~g~~~~~~~hivvtGsY 174 (487)
T KOG0310|consen 99 -SRVILRQLYAHQAP--VHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA-YVQAELSGHTDYVRCGDISPANDHIVVTGSY 174 (487)
T ss_pred -cHHHHHHHhhccCc--eeEEEecccCCeEEEecCCCceEEEEEcCCc-EEEEEecCCcceeEeeccccCCCeEEEecCC
Confidence 66678888899877 5556778888888777999999999999986 345578899999999999995 558999999
Q ss_pred CCcEEEEEECCCc-ceeeEEecc--eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCC
Q psy3710 206 KGTLIRVFDTGSG-QKLNELRRG--LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT 282 (424)
Q Consensus 206 d~~~i~iwd~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 282 (424)
||. |++||++.. ..+.++..+ +..+++-|.|..++.+| .+.+++||+.++.+....+..|...|+|+.+..++.
T Consensus 175 Dg~-vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~ 251 (487)
T KOG0310|consen 175 DGK-VRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG--GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDST 251 (487)
T ss_pred Cce-EEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCCceehhhhhcccceEEEEEeecCCc
Confidence 999 999999987 677777754 77788889988887644 568999999988877777777999999999999999
Q ss_pred EEEEEeCCCcEEEEEECCCCceeeee-----------ccCCcEEEEEeCCCcEEEEEccccc
Q psy3710 283 RLATASYKGTLIRVFDTGSGQKLNEL-----------RRDSSYLCVSSDHGTVHVFSVDEAQ 333 (424)
Q Consensus 283 ~l~~~~~d~~~i~iwd~~~~~~~~~~-----------~~~~~~l~~~~~d~~i~iw~~~~~~ 333 (424)
.|++++-|+. |++||+.+.+.+..+ +|+++.++.|..+|.+.+=+....+
T Consensus 252 rLlS~sLD~~-VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 252 RLLSGSLDRH-VKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred eEeecccccc-eEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence 9999999999 999999888887764 5889999999999988877655543
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-29 Score=226.76 Aligned_cols=320 Identities=17% Similarity=0.191 Sum_probs=236.6
Q ss_pred ccccCCceEEEEECCCCCeeEeec--CCe-EEEEeCCcCc------------ccccccccCCCeeeEEEeccCceEEEEe
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGM--EDG-FRIYNCDPLK------------EKERQDFTDGGLGHVEMLFRCNYLALVG 70 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~--~~~-i~iw~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 70 (424)
+..++..|.++..+|||..+|+|+ .|+ ++||+.++.- .+....-|.+.+.++.|++++.++|+.+
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 344567899999999999999988 555 8899976432 1222344899999999999999999888
Q ss_pred CCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEeeccEEEEeecCCCceeEEEeeCCCCCeeEEEeec
Q psy3710 71 GGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPN 150 (424)
Q Consensus 71 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (424)
.|+.|.||..... . ...+..+. .+.. +. +..+....+.+|.. .+..++|+
T Consensus 89 -------DD~~v~iW~~~~~-~---------~~~~fgs~-------g~~~---~v-E~wk~~~~l~~H~~--DV~Dv~Ws 138 (942)
T KOG0973|consen 89 -------DDRLVMIWERAEI-G---------SGTVFGST-------GGAK---NV-ESWKVVSILRGHDS--DVLDVNWS 138 (942)
T ss_pred -------CcceEEEeeeccc-C---------Cccccccc-------cccc---cc-ceeeEEEEEecCCC--ccceeccC
Confidence 6899999986431 0 00000000 0100 11 13455667777774 48899999
Q ss_pred CCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---
Q psy3710 151 SNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG--- 227 (424)
Q Consensus 151 ~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~--- 227 (424)
|++.++++ ++.|++|.+|+..+. ..+..+.+|.+.|..+.|.|-|++|++-+.|++ |++|++.+....+.+..+
T Consensus 139 p~~~~lvS-~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrt-ikvwrt~dw~i~k~It~pf~~ 215 (942)
T KOG0973|consen 139 PDDSLLVS-VSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRT-LKVWRTSDWGIEKSITKPFEE 215 (942)
T ss_pred CCccEEEE-ecccceEEEEccccc-eeeeeeecccccccceEECCccCeeeeecCCce-EEEEEcccceeeEeeccchhh
Confidence 99999998 999999999999998 889999999999999999999999999999999 999998776666665533
Q ss_pred ------eeeeeecCCCCeEEEEeecCC---eEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEE
Q psy3710 228 ------LCVLCPNSNNSLLAFPGRKSG---HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS-YKGTLIRVF 297 (424)
Q Consensus 228 ------~~~~~~~~~~~~~~~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~~i~iw 297 (424)
+..+.|+|+|.+++...+.++ ++.|.+..+.+. -..+-+|.+++.++.|+|. |+-.- .+|+ -.-.
T Consensus 216 ~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~-~~~LvGH~~p~evvrFnP~---lfe~~~~ng~-~~~~ 290 (942)
T KOG0973|consen 216 SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKV-DKDLVGHSAPVEVVRFNPK---LFERNNKNGT-STQP 290 (942)
T ss_pred CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCcee-eeeeecCCCceEEEEeChH---HhccccccCC-ccCC
Confidence 567899999999988655443 677887765542 3455699999999999983 11000 0332 0000
Q ss_pred ECCCCceeeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCC
Q psy3710 298 DTGSGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSN 377 (424)
Q Consensus 298 d~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 377 (424)
+ .. -..+|+|+.|++|-||.....+++--. ..+-+..|.+++|+|||.
T Consensus 291 ~-------~~----y~i~AvgSqDrSlSVW~T~~~RPl~vi---------------------~~lf~~SI~DmsWspdG~ 338 (942)
T KOG0973|consen 291 N-------CY----YCIAAVGSQDRSLSVWNTALPRPLFVI---------------------HNLFNKSIVDMSWSPDGF 338 (942)
T ss_pred C-------cc----eEEEEEecCCccEEEEecCCCCchhhh---------------------hhhhcCceeeeeEcCCCC
Confidence 0 00 026788999999999998775543211 112245688999999999
Q ss_pred eEEEEeccCcEEEEEecC
Q psy3710 378 SIIVICADGSYYKFMFNS 395 (424)
Q Consensus 378 ~l~~~~~dg~v~~~~~~~ 395 (424)
.|+.+|.||+|.++.+.+
T Consensus 339 ~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 339 SLFACSLDGTVALIHFEE 356 (942)
T ss_pred eEEEEecCCeEEEEEcch
Confidence 999999999999999985
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=191.19 Aligned_cols=280 Identities=13% Similarity=0.157 Sum_probs=220.2
Q ss_pred eecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCC
Q psy3710 97 EFNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLAD 173 (424)
Q Consensus 97 ~~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~ 173 (424)
.|+.+++.+.++.+|.++.+ |....||-.. +++.+-++.+|.+. +.++..+.+.+.+++ |+.|.++++||+++
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~-nGerlGty~GHtGa--vW~~Did~~s~~liT-GSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSL-NGERLGTYDGHTGA--VWCCDIDWDSKHLIT-GSADQTAKLWDVET 83 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEec-CCceeeeecCCCce--EEEEEecCCcceeee-ccccceeEEEEcCC
Confidence 38999999999999988876 8999999875 88999999999866 777777778889998 99999999999999
Q ss_pred CCCCCcccccccCCeEEEEEccCCCEEEEEecC-----CcEEEEEECC-------CcceeeEEecc---eeeeeecCCCC
Q psy3710 174 PERPPLDIAAHEAPLSCIALNQTGTRLATASYK-----GTLIRVFDTG-------SGQKLNELRRG---LCVLCPNSNNS 238 (424)
Q Consensus 174 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~~i~iwd~~-------~~~~~~~~~~~---~~~~~~~~~~~ 238 (424)
+ +.+..++ ...+|..+.|+++|++++.+..+ +. |.++|++ ..++...+..+ +..+-|.|.++
T Consensus 84 G-k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~-v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 84 G-KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCF-VSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred C-cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceE-EEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 8 5555554 46789999999999988876543 45 9999998 34555555543 66778888888
Q ss_pred eEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec---------
Q psy3710 239 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR--------- 309 (424)
Q Consensus 239 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~--------- 309 (424)
.+++ |.++|.|.+||++++...+.....|...|+.|.++||..+++++|.|.+ -++||..+.++++++.
T Consensus 161 ~ii~-Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt-akl~D~~tl~v~Kty~te~PvN~aa 238 (327)
T KOG0643|consen 161 TIIA-GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT-AKLVDVRTLEVLKTYTTERPVNTAA 238 (327)
T ss_pred EEEE-ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc-ceeeeccceeeEEEeeeccccccee
Confidence 8877 9999999999999998878777889999999999999999999999999 9999999999998764
Q ss_pred --cCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCcccc--CCceeeEEeecCCCceEEEEecCCCeEEEEecc
Q psy3710 310 --RDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFS--SSWSFCKFQIPSDPPCICAFGADSNSIIVICAD 385 (424)
Q Consensus 310 --~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 385 (424)
|-...++.|+.....-+=-.... . ..|..++.. -+..+..++.|-+|+..++|+|+|+..++|+.|
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r--~--------GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGED 308 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTR--A--------GKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGED 308 (327)
T ss_pred cccccceEEecCCceeeeeeeeccc--c--------cchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCC
Confidence 55556665554333222211110 0 011111100 112244577899999999999999999999999
Q ss_pred CcEEEEEecC
Q psy3710 386 GSYYKFMFNS 395 (424)
Q Consensus 386 g~v~~~~~~~ 395 (424)
|.|++..++.
T Consensus 309 G~VR~h~Fd~ 318 (327)
T KOG0643|consen 309 GYVRLHHFDS 318 (327)
T ss_pred ceEEEEEecc
Confidence 9999998863
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-28 Score=209.21 Aligned_cols=363 Identities=15% Similarity=0.165 Sum_probs=247.0
Q ss_pred ccccccCCceEEEEECCCCC---eeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCC
Q psy3710 4 GTSSTYKNGLLYAGFNQDQG---CFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPN 79 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~g~---~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d 79 (424)
.++.||..+|+|+.|-|+.+ ++++|+.|+ |++|.++................++++........... +|
T Consensus 48 t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~-------ad 120 (764)
T KOG1063|consen 48 TTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKA-------AD 120 (764)
T ss_pred EeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeec-------cC
Confidence 45899999999999999887 788888888 99999884333322222112222333332222222211 36
Q ss_pred CeEEEEECCCCc--------------------------------------------------EEEEEe-ecCCeEEEEec
Q psy3710 80 NRVMIWDDLKKQ--------------------------------------------------VVICLE-FNAPVKGVRLR 108 (424)
Q Consensus 80 ~~i~iwd~~~~~--------------------------------------------------~~~~~~-~~~~v~~~~~~ 108 (424)
+++.+||.+..+ .+..+. |.+.|++++|.
T Consensus 121 ~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~ 200 (764)
T KOG1063|consen 121 GTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFA 200 (764)
T ss_pred ceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhh
Confidence 777777663222 112333 66778888886
Q ss_pred CC---ceEEEe---eccEEEEeecCCC--------------------ceeEEE----------eeCCCCCeeEEEeecCC
Q psy3710 109 RD---KIVVVL---EGLIKVYTFIQCP--------------------QQLHVF----------ETNPNPKGLCVLCPNSN 152 (424)
Q Consensus 109 ~~---~~~~~~---~~~i~v~~~~~~~--------------------~~~~~~----------~~~~~~~~~~~~~~~~~ 152 (424)
.. ..++++ |..|++|.+.... .....+ .+|. ..+.++.|+|.
T Consensus 201 ~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe--DWV~sv~W~p~ 278 (764)
T KOG1063|consen 201 RLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE--DWVYSVWWHPE 278 (764)
T ss_pred ccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc--cceEEEEEccc
Confidence 43 356666 8899999885322 011111 1444 44788889999
Q ss_pred CCeEEEeeccCCeEEEEeCCCCC---------------------------------------------------CCCccc
Q psy3710 153 NSLLAFPGRKSGHVHLVDLADPE---------------------------------------------------RPPLDI 181 (424)
Q Consensus 153 ~~~l~~~~~~dg~i~i~d~~~~~---------------------------------------------------~~~~~~ 181 (424)
+..|++ ++.|.++.+|...+.. .....+
T Consensus 279 ~~~LLS-ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~i 357 (764)
T KOG1063|consen 279 GLDLLS-ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVI 357 (764)
T ss_pred hhhhee-cccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccc
Confidence 877777 8888888888765321 012234
Q ss_pred ccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCc-ceeeEEecc------eeeeeecCCCCeEEEEeecCCeEEEEe
Q psy3710 182 AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG-QKLNELRRG------LCVLCPNSNNSLLAFPGRKSGHVHLVD 254 (424)
Q Consensus 182 ~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~dg~i~i~d 254 (424)
.+|.+.|.+++|+|.|++|++.+.|.+ -|++---.. ..-.++..+ +.++++-+. ...+++|.++..+++|+
T Consensus 358 SGH~~~V~dv~W~psGeflLsvs~DQT-TRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~ 435 (764)
T KOG1063|consen 358 SGHVDGVKDVDWDPSGEFLLSVSLDQT-TRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFE 435 (764)
T ss_pred ccccccceeeeecCCCCEEEEeccccc-eeeecccccccceeeecccccccccceeeehccC-Cceeeecccceeeeeec
Confidence 589999999999999999999999999 888865411 112333222 444554443 56666777778888887
Q ss_pred CCC-------------------------------------------CC--------------------------------
Q psy3710 255 LAD-------------------------------------------PE-------------------------------- 259 (424)
Q Consensus 255 ~~~-------------------------------------------~~-------------------------------- 259 (424)
... +.
T Consensus 436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw 515 (764)
T KOG1063|consen 436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW 515 (764)
T ss_pred CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence 541 00
Q ss_pred CCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcE----EEEEECCCCceee------------eeccCCcEEEEEeCCCc
Q psy3710 260 RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTL----IRVFDTGSGQKLN------------ELRRDSSYLCVSSDHGT 323 (424)
Q Consensus 260 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~----i~iwd~~~~~~~~------------~~~~~~~~l~~~~~d~~ 323 (424)
+.+..+.+|...|++++.+|+++++|+++..... |++|+..+....+ .|+|||++|++.+.|.+
T Consensus 516 PEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 516 PEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT 595 (764)
T ss_pred hhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce
Confidence 0011234688899999999999999999875422 9999998765444 47899999999999999
Q ss_pred EEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCC
Q psy3710 324 VHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSK 396 (424)
Q Consensus 324 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~ 396 (424)
+.+|........ ..+++..+.|..-|.+|.|+|++++++|+|.|.+|++|.....
T Consensus 596 ~sl~~~~~~~~~------------------e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 596 VSLYEVQEDIKD------------------EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEeeeeecccch------------------hhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 999998654321 1123446677788999999999999999999999999998744
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=210.72 Aligned_cols=265 Identities=13% Similarity=0.192 Sum_probs=216.1
Q ss_pred ecCCeEEEEecCCceEEEe---eccEEEEeecCCCc--eeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCC
Q psy3710 98 FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQ--QLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLA 172 (424)
Q Consensus 98 ~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~ 172 (424)
|.+.+..+.|-++...+++ |..|++|+.. ..+ ...++.+..+ .+..+.+.++++.+++ ++.|+.+++|++.
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~-~~k~~~~~tLaGs~g--~it~~d~d~~~~~~iA-as~d~~~r~Wnvd 249 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVL-GEKSELISTLAGSLG--NITSIDFDSDNKHVIA-ASNDKNLRLWNVD 249 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcc-cchhhhhhhhhccCC--CcceeeecCCCceEEe-ecCCCceeeeecc
Confidence 7889999999998766665 8899999985 333 4555655553 4888999999999998 9999999999999
Q ss_pred CCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEE
Q psy3710 173 DPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHL 252 (424)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i 252 (424)
.. +...++.+|.+.|+++.|......+++|+.|.+ |++||+....+.+++-....+..+-.. ...+++|-.|+.|++
T Consensus 250 ~~-r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRt-iK~WDl~k~~C~kt~l~~S~cnDI~~~-~~~~~SgH~DkkvRf 326 (459)
T KOG0288|consen 250 SL-RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRT-IKLWDLQKAYCSKTVLPGSQCNDIVCS-ISDVISGHFDKKVRF 326 (459)
T ss_pred ch-hhhhhhcccccceeeehhhccccceeeccccch-hhhhhhhhhheeccccccccccceEec-ceeeeecccccceEE
Confidence 86 788899999999999999887767999999999 999999998888776544222211111 556778999999999
Q ss_pred EeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeee----------------eccCCcEEE
Q psy3710 253 VDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE----------------LRRDSSYLC 316 (424)
Q Consensus 253 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~----------------~~~~~~~l~ 316 (424)
||.++... ....+.+ +.|+++..++++..|.+++.|.+ +.+.|+++.+.... |+|++.|++
T Consensus 327 wD~Rs~~~-~~sv~~g-g~vtSl~ls~~g~~lLsssRDdt-l~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 327 WDIRSADK-TRSVPLG-GRVTSLDLSMDGLELLSSSRDDT-LKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA 403 (459)
T ss_pred EeccCCce-eeEeecC-cceeeEeeccCCeEEeeecCCCc-eeeeecccccEEEEeeccccccccccceeEECCCCceee
Confidence 99998764 3344344 49999999999999999999999 99999999877664 679999999
Q ss_pred EEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEE
Q psy3710 317 VSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFM 392 (424)
Q Consensus 317 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~ 392 (424)
+||.||.|+||++.++++........ ....|++++|+|.|.+|++++.++.+.+|.
T Consensus 404 AGS~dgsv~iW~v~tgKlE~~l~~s~--------------------s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKLEKVLSLST--------------------SNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eccCCCcEEEEEccCceEEEEeccCC--------------------CCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999999987654332211 112588999999999999999999999994
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-27 Score=203.15 Aligned_cols=276 Identities=11% Similarity=0.126 Sum_probs=213.4
Q ss_pred cCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcc--cccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEE
Q psy3710 9 YKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKE--KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIW 85 (424)
Q Consensus 9 h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iw 85 (424)
-+.+|.++||+.+.+.||.+..+| |.||++...-. .......+..|..++|+ ++..|++++ .+|.|.-|
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g-------~sg~i~Ew 95 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSG-------LSGSITEW 95 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeec-------CCceEEEE
Confidence 367899999999999999999999 99999887533 22234467799999999 566677777 46999999
Q ss_pred ECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeec
Q psy3710 86 DDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGR 161 (424)
Q Consensus 86 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (424)
|+.+++.+..+. ..+.|++++.+|.+..++. ||.+..++.. .+..............+.++.|+|++..++. |+
T Consensus 96 Dl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~-p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~-Gs 173 (691)
T KOG2048|consen 96 DLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG-PDKITYKRSLMRQKSRVLSLSWNPTGTKIAG-GS 173 (691)
T ss_pred ecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecC-CceEEEEeecccccceEEEEEecCCccEEEe-cc
Confidence 999999999998 6889999999998865554 7877777764 4444443333333466899999999999998 99
Q ss_pred cCCeEEEEeCCCCCCCCc-------cccc-ccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe---cceee
Q psy3710 162 KSGHVHLVDLADPERPPL-------DIAA-HEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR---RGLCV 230 (424)
Q Consensus 162 ~dg~i~i~d~~~~~~~~~-------~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~---~~~~~ 230 (424)
.||.|++||..++. ... .+.. ...-|.++.|-.+ ..|++|...|+ |.+||...+..++.+. .++.+
T Consensus 174 ~Dg~Iriwd~~~~~-t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~-V~FWd~~~gTLiqS~~~h~adVl~ 250 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQ-TLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGT-VTFWDSIFGTLIQSHSCHDADVLA 250 (691)
T ss_pred cCceEEEEEcCCCc-eEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCce-EEEEcccCcchhhhhhhhhcceeE
Confidence 99999999999873 333 1111 2345778888755 48999999999 9999999998887765 44777
Q ss_pred eeecCCCCeEEEEeecCCeEEEEeCCCCCCC---CeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCC
Q psy3710 231 LCPNSNNSLLAFPGRKSGHVHLVDLADPERP---PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 231 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~ 301 (424)
++..+++..++. ++.|+.|.-|...+.... ......|...|.+++..++ .+++|+.|.. +.+-..+.
T Consensus 251 Lav~~~~d~vfs-aGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~-l~i~~s~~ 320 (691)
T KOG2048|consen 251 LAVADNEDRVFS-AGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFT-LAICSSRE 320 (691)
T ss_pred EEEcCCCCeEEE-ccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeE-EEEccccc
Confidence 888888777776 778888888887766431 2233478889999999887 9999999998 77765544
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-29 Score=195.54 Aligned_cols=275 Identities=12% Similarity=0.179 Sum_probs=221.1
Q ss_pred cccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC------------C------cEEEEEe-ecCCeEEEEec
Q psy3710 48 DFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK------------K------QVVICLE-FNAPVKGVRLR 108 (424)
Q Consensus 48 ~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~------------~------~~~~~~~-~~~~v~~~~~~ 108 (424)
..|++++.+-+|++||..+++.+ .|-.|+|.|++. | -.++++- |..+|+++.|+
T Consensus 109 t~HK~~cR~aafs~DG~lvATGs-------aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGS-------ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred eecccceeeeeeCCCCcEEEccC-------CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence 34889999999999999999888 689999999861 1 2334443 88999999999
Q ss_pred CCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCc--cccc
Q psy3710 109 RDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL--DIAA 183 (424)
Q Consensus 109 ~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~--~~~~ 183 (424)
|...++++ |++|++||+. .....+.++.......+.+++|+|.|.+|++ |.....+++||+++.+..+. .-..
T Consensus 182 Pre~ILiS~srD~tvKlFDfs-K~saKrA~K~~qd~~~vrsiSfHPsGefllv-gTdHp~~rlYdv~T~QcfvsanPd~q 259 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFS-KTSAKRAFKVFQDTEPVRSISFHPSGEFLLV-GTDHPTLRLYDVNTYQCFVSANPDDQ 259 (430)
T ss_pred chhheEEeccCCCeEEEEecc-cHHHHHHHHHhhccceeeeEeecCCCceEEE-ecCCCceeEEeccceeEeeecCcccc
Confidence 99988876 9999999996 3333333333333445889999999999999 99999999999998632211 2347
Q ss_pred ccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCe
Q psy3710 184 HEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL 263 (424)
Q Consensus 184 ~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~ 263 (424)
|.+.|+++.+++.|++.++++.||. |++||--+++++.++..
T Consensus 260 ht~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS~rCv~t~~~------------------------------------- 301 (430)
T KOG0640|consen 260 HTGAITQVRYSSTGSLYVTASKDGA-IKLWDGVSNRCVRTIGN------------------------------------- 301 (430)
T ss_pred cccceeEEEecCCccEEEEeccCCc-EEeeccccHHHHHHHHh-------------------------------------
Confidence 9999999999999999999999999 99999989988877652
Q ss_pred eeccC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeecc-----------------CCcEEEEEe-CCCcE
Q psy3710 264 DIAAH-EAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR-----------------DSSYLCVSS-DHGTV 324 (424)
Q Consensus 264 ~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-----------------~~~~l~~~~-~d~~i 324 (424)
+| ...|.+..|..+|+++++.+.|.. +++|.+.+++++.++.. ...+++.-. ..+.+
T Consensus 302 ---AH~gsevcSa~Ftkn~kyiLsSG~DS~-vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~sl 377 (430)
T KOG0640|consen 302 ---AHGGSEVCSAVFTKNGKYILSSGKDST-VKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSL 377 (430)
T ss_pred ---hcCCceeeeEEEccCCeEEeecCCcce-eeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCce
Confidence 34 457899999999999999999999 99999999999988653 344555443 34678
Q ss_pred EEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 325 HVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 325 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
.-||.+++..+...+ -.|++.++.+.-||.+.-+++|+.|-..++|--.
T Consensus 378 csWdaRtadr~~l~s---------------------lgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 378 CSWDARTADRVALLS---------------------LGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred eeccccchhhhhhcc---------------------cCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 899999877654322 2467888899999999999999999999999743
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-28 Score=198.02 Aligned_cols=276 Identities=14% Similarity=0.198 Sum_probs=235.7
Q ss_pred CceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC
Q psy3710 11 NGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK 89 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~ 89 (424)
..|+++...|....+.+|+.+. +.++|....+.+..+.+|...|+.+.+.++...+++++ +|..|+||....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aS-------ad~~i~vws~~~ 292 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITAS-------ADEIIRVWSVPL 292 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecC-------CcceEEeecccc
Confidence 5688888888877888999996 99999999999888999999999999999999998888 689999999877
Q ss_pred CcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCe
Q psy3710 90 KQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGH 165 (424)
Q Consensus 90 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~ 165 (424)
........ |.++|+.+..+|.+.++.+ |+...+.|++ ++..+.............+..|+|||..+.+ |..||.
T Consensus 293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~-~g~~lt~vs~~~s~v~~ts~~fHpDgLifgt-gt~d~~ 370 (506)
T KOG0289|consen 293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS-SGSQLTVVSDETSDVEYTSAAFHPDGLIFGT-GTPDGV 370 (506)
T ss_pred ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEcc-CCcEEEEEeeccccceeEEeeEcCCceEEec-cCCCce
Confidence 76665555 8999999999999988876 7888888987 6766666655455577889999999998888 999999
Q ss_pred EEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEec----ceeeeeecCCCCeEE
Q psy3710 166 VHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR----GLCVLCPNSNNSLLA 241 (424)
Q Consensus 166 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 241 (424)
|++||+.++ .....|.+|.++|..++|+.+|-+|++++.|+. |++||++..+...++.. ++..++|.+.|.+++
T Consensus 371 vkiwdlks~-~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~ 448 (506)
T KOG0289|consen 371 VKIWDLKSQ-TNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLG 448 (506)
T ss_pred EEEEEcCCc-cccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhcccceeeccccccceeEEEcCCCCeEE
Confidence 999999987 578899999999999999999999999999999 99999999887777653 378899999999998
Q ss_pred EEeecCCeEEEEeCCCCC-CCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEC
Q psy3710 242 FPGRKSGHVHLVDLADPE-RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDT 299 (424)
Q Consensus 242 ~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~ 299 (424)
+ ++.+=.|++++-.+.. .....+..|.+..+++.|..+.+++++++.|.. ++++.+
T Consensus 449 ~-~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~-l~~~a~ 505 (506)
T KOG0289|consen 449 I-AGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAI-LRLYAL 505 (506)
T ss_pred e-ecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhh-eEEeec
Confidence 8 5667777777754433 234556678889999999999999999999998 888754
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-27 Score=208.14 Aligned_cols=271 Identities=13% Similarity=0.162 Sum_probs=217.4
Q ss_pred EEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEee-cCCeEEEEecCCceEEEe---eccEEEEeecCCCcee
Q psy3710 57 VEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEF-NAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQL 132 (424)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~ 132 (424)
+.|+ ..+.++++. ...|++|+..+++....... ...|+++.|+++|.+++. +|.|.|||.. ..+.+
T Consensus 183 ldWs-s~n~laVal--------g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~-~~k~~ 252 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL--------GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVK-EQKKT 252 (484)
T ss_pred hhcc-cCCeEEEEe--------cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehh-hcccc
Confidence 5566 445666655 36999999999997776664 899999999999988886 8999999997 66777
Q ss_pred EEEee-CCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEE
Q psy3710 133 HVFET-NPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIR 211 (424)
Q Consensus 133 ~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~ 211 (424)
..+.. |. ..+-+++|+ +..+.+ |+.++.|..+|++..+.....+.+|...|..++|++|+.++++|+.|+. +.
T Consensus 253 ~~~~~~h~--~rvg~laW~--~~~lss-Gsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~-~~ 326 (484)
T KOG0305|consen 253 RTLRGSHA--SRVGSLAWN--SSVLSS-GSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNV-VF 326 (484)
T ss_pred ccccCCcC--ceeEEEecc--CceEEE-ecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccc-eE
Confidence 77776 54 457788886 445555 9999999999999875555568899999999999999999999999999 99
Q ss_pred EEECCCcceeeEEecc---eeeeeecCCCCeEEEEe--ecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEE
Q psy3710 212 VFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPG--RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLAT 286 (424)
Q Consensus 212 iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 286 (424)
|||....+++..+..+ +.+++|+|-...++++| +.|+.|++||..++...... .-.+.|.+|.|++..+-|++
T Consensus 327 Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v--dtgsQVcsL~Wsk~~kEi~s 404 (484)
T KOG0305|consen 327 IWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV--DTGSQVCSLIWSKKYKELLS 404 (484)
T ss_pred eccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc--ccCCceeeEEEcCCCCEEEE
Confidence 9999888887777665 78899999888888765 47999999999987743322 45678999999998876666
Q ss_pred EeCCCcEEEEEECCCCceeeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCC
Q psy3710 287 ASYKGTLIRVFDTGSGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDP 366 (424)
Q Consensus 287 ~~~d~~~i~iwd~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (424)
+-... ++.|.||+..+.+.+. .+..|...
T Consensus 405 thG~s-----------------------------~n~i~lw~~ps~~~~~----------------------~l~gH~~R 433 (484)
T KOG0305|consen 405 THGYS-----------------------------ENQITLWKYPSMKLVA----------------------ELLGHTSR 433 (484)
T ss_pred ecCCC-----------------------------CCcEEEEeccccceee----------------------eecCCcce
Confidence 54332 3467777777644332 24556777
Q ss_pred ceEEEEecCCCeEEEEeccCcEEEEEecCC
Q psy3710 367 PCICAFGADSNSIIVICADGSYYKFMFNSK 396 (424)
Q Consensus 367 ~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~ 396 (424)
|..+++||||..+++|+.|.++++|++...
T Consensus 434 Vl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 434 VLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 889999999999999999999999999854
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=218.20 Aligned_cols=228 Identities=15% Similarity=0.295 Sum_probs=189.9
Q ss_pred CeeEEEeecCCCCeEEEeeccCCeEEEEeCCC--------------------------------C---------------
Q psy3710 142 KGLCVLCPNSNNSLLAFPGRKSGHVHLVDLAD--------------------------------P--------------- 174 (424)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~--------------------------------~--------------- 174 (424)
..|+++.|++||++||+ |++|+.|+||.+.. .
T Consensus 268 gaIw~mKFS~DGKyLAs-aGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~ 346 (712)
T KOG0283|consen 268 GAIWAMKFSHDGKYLAS-AGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP 346 (712)
T ss_pred CcEEEEEeCCCCceeee-cCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence 55999999999999998 99999999998765 0
Q ss_pred ------------CCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc--eeeeeecCCCCeE
Q psy3710 175 ------------ERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG--LCVLCPNSNNSLL 240 (424)
Q Consensus 175 ------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~ 240 (424)
.+++..+.+|.+.|.++.|+.+ .+|++++.|++ |++|++...+++..|... +++++|+|.+..+
T Consensus 347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKT-VRLWh~~~~~CL~~F~HndfVTcVaFnPvDDry 424 (712)
T KOG0283|consen 347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKT-VRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRY 424 (712)
T ss_pred cccCCCccccccccchhhhhccchhheecccccC-CeeEecccccc-EEeecCCCcceeeEEecCCeeEEEEecccCCCc
Confidence 0345567899999999999976 58999999999 999999999999999876 8999999999999
Q ss_pred EEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec-----------
Q psy3710 241 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR----------- 309 (424)
Q Consensus 241 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~----------- 309 (424)
+++|+-||.++||++...+. .....-..-|++++|.|||++.+.|+.+|. +++|+....+....+.
T Consensus 425 FiSGSLD~KvRiWsI~d~~V--v~W~Dl~~lITAvcy~PdGk~avIGt~~G~-C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 425 FISGSLDGKVRLWSISDKKV--VDWNDLRDLITAVCYSPDGKGAVIGTFNGY-CRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred EeecccccceEEeecCcCee--EeehhhhhhheeEEeccCCceEEEEEeccE-EEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999987552 222344588999999999999999999999 9999998766655431
Q ss_pred ----------cCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeE
Q psy3710 310 ----------RDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSI 379 (424)
Q Consensus 310 ----------~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 379 (424)
.+...+++.+.|..|+|||..+.+.+.+..+.... .......|+.||++|
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~--------------------~SQ~~Asfs~Dgk~I 561 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT--------------------SSQISASFSSDGKHI 561 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC--------------------CcceeeeEccCCCEE
Confidence 23345777889999999999887776665543322 123456899999999
Q ss_pred EEEeccCcEEEEEecC
Q psy3710 380 IVICADGSYYKFMFNS 395 (424)
Q Consensus 380 ~~~~~dg~v~~~~~~~ 395 (424)
+++++|..|++|++..
T Consensus 562 Vs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 562 VSASEDSWVYIWKNDS 577 (712)
T ss_pred EEeecCceEEEEeCCC
Confidence 9999999999999853
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-27 Score=203.98 Aligned_cols=369 Identities=13% Similarity=0.114 Sum_probs=266.2
Q ss_pred ccccccCCceEEEEECCCCC---eeEeecCCe-EEEEeCCcCcc---------------------c----------cccc
Q psy3710 4 GTSSTYKNGLLYAGFNQDQG---CFACGMEDG-FRIYNCDPLKE---------------------K----------ERQD 48 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~g~---~la~g~~~~-i~iw~~~~~~~---------------------~----------~~~~ 48 (424)
..+.||.+.|++++|...+. +||+++.|. ||||.+..... . ....
T Consensus 185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~ 264 (764)
T KOG1063|consen 185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM 264 (764)
T ss_pred EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence 45899999999999987653 777889888 99998643330 0 0122
Q ss_pred ccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCc--EEEEEee------cCCeEEEEecCCceEEEe---e
Q psy3710 49 FTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ--VVICLEF------NAPVKGVRLRRDKIVVVL---E 117 (424)
Q Consensus 49 ~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~~------~~~v~~~~~~~~~~~~~~---~ 117 (424)
.|+.-|.++.|.|.+..|++++ .|+++.+|...+.. -+..... ...-.+..|+|++..+.+ .
T Consensus 265 GHeDWV~sv~W~p~~~~LLSAS-------aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~ 337 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSAS-------ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT 337 (764)
T ss_pred CcccceEEEEEccchhhheecc-------cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc
Confidence 5888999999999998888888 68999999876543 3333331 234788899999976665 7
Q ss_pred ccEEEEeecCCCc--eeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCC--------------------
Q psy3710 118 GLIKVYTFIQCPQ--QLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE-------------------- 175 (424)
Q Consensus 118 ~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~-------------------- 175 (424)
|..++|...+... +...+.+|. ..+..+.|+|.|.+|++ .+.|.+-|+|-.-..+
T Consensus 338 Gg~hlWkt~d~~~w~~~~~iSGH~--~~V~dv~W~psGeflLs-vs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~ 414 (764)
T KOG1063|consen 338 GGFHLWKTKDKTFWTQEPVISGHV--DGVKDVDWDPSGEFLLS-VSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLS 414 (764)
T ss_pred CcEEEEeccCccceeecccccccc--ccceeeeecCCCCEEEE-eccccceeeecccccccceeeecccccccccceeee
Confidence 8999999432222 223344554 55888999999998887 7777766665322000
Q ss_pred --------------------------------------------------------------------------------
Q psy3710 176 -------------------------------------------------------------------------------- 175 (424)
Q Consensus 176 -------------------------------------------------------------------------------- 175 (424)
T Consensus 415 ~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~ 494 (764)
T KOG1063|consen 415 FVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLA 494 (764)
T ss_pred hccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccc
Confidence
Q ss_pred ---------------------CCCcccccccCCeEEEEEccCCCEEEEEecCCc----EEEEEECCCcceeeEEecc---
Q psy3710 176 ---------------------RPPLDIAAHEAPLSCIALNQTGTRLATASYKGT----LIRVFDTGSGQKLNELRRG--- 227 (424)
Q Consensus 176 ---------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~----~i~iwd~~~~~~~~~~~~~--- 227 (424)
..+..+.+|.-.|.+++.+|+|+.+++++.... .|++|+..+...++.++.|
T Consensus 495 ~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLT 574 (764)
T KOG1063|consen 495 AAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLT 574 (764)
T ss_pred cCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceE
Confidence 122344578889999999999999999875432 3999999998888888877
Q ss_pred eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCe---eeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCC--
Q psy3710 228 LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL---DIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG-- 302 (424)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~-- 302 (424)
++.++|+|++.+++. .+.|.++.+|.......... ..+.|..-|.+..|+|++.+++|+|.|.+ |++|.....
T Consensus 575 VT~l~FSpdg~~LLs-vsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~-VkVW~~~~~~d 652 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLS-VSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKK-VKVWEEPDLRD 652 (764)
T ss_pred EEEEEECCCCcEEEE-eecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCce-EEEEeccCchh
Confidence 788999999999887 89999999999866543332 36789999999999999999999999999 999998877
Q ss_pred ceeeeec------------------c-CCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeec
Q psy3710 303 QKLNELR------------------R-DSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIP 363 (424)
Q Consensus 303 ~~~~~~~------------------~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (424)
+.+..+. + .+..++.|-..|.|.+|....-............. .......|
T Consensus 653 ~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~----------~l~~~~~~ 722 (764)
T KOG1063|consen 653 KYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDT----------RLCATIGP 722 (764)
T ss_pred hhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeecc----------ccccccCh
Confidence 4333211 1 33467888899999999976422111111111000 01113345
Q ss_pred CCCceEEEEecC----------CCeEEEEeccCcEEEEEec
Q psy3710 364 SDPPCICAFGAD----------SNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 364 ~~~~~~~~~s~~----------~~~l~~~~~dg~v~~~~~~ 394 (424)
.+.|..++|+|- ...|++|++|..+++++++
T Consensus 723 ~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 723 DSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred HHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 667888889864 2356999999999999875
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-27 Score=210.62 Aligned_cols=256 Identities=12% Similarity=0.053 Sum_probs=188.9
Q ss_pred ccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCccc-------------ccccccCCCeeeEEEec-cCceEEEEeCC
Q psy3710 8 TYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEK-------------ERQDFTDGGLGHVEMLF-RCNYLALVGGG 72 (424)
Q Consensus 8 ~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~-------------~~~~~~~~~i~~~~~~~-~~~~l~~~~~~ 72 (424)
.|-..|+....++|+..+++++.+. ...|+...+..+ .....|.+.|.+++|+| +++.+++++
T Consensus 18 ~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS-- 95 (493)
T PTZ00421 18 RHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTAS-- 95 (493)
T ss_pred cceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEe--
Confidence 3556677777888876666666666 567764332211 12344777888888887 667777776
Q ss_pred cCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEeeccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCC
Q psy3710 73 THPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSN 152 (424)
Q Consensus 73 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (424)
.|++|++||+.++.... .....+..+.+|.. .+.+++|+|+
T Consensus 96 -----~DgtIkIWdi~~~~~~~--------------------------------~~~~~l~~L~gH~~--~V~~l~f~P~ 136 (493)
T PTZ00421 96 -----EDGTIMGWGIPEEGLTQ--------------------------------NISDPIVHLQGHTK--KVGIVSFHPS 136 (493)
T ss_pred -----CCCEEEEEecCCCcccc--------------------------------ccCcceEEecCCCC--cEEEEEeCcC
Confidence 57888888875432110 01133445666654 4788999998
Q ss_pred C-CeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecce---
Q psy3710 153 N-SLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGL--- 228 (424)
Q Consensus 153 ~-~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~--- 228 (424)
+ .+|++ |+.|+.|++||+.++ .....+..|...|.+++|+|+|.+|++++.|+. |++||+++++.+..+..+.
T Consensus 137 ~~~iLaS-gs~DgtVrIWDl~tg-~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~-IrIwD~rsg~~v~tl~~H~~~~ 213 (493)
T PTZ00421 137 AMNVLAS-AGADMVVNVWDVERG-KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK-LNIIDPRDGTIVSSVEAHASAK 213 (493)
T ss_pred CCCEEEE-EeCCCEEEEEECCCC-eEEEEEcCCCCceEEEEEECCCCEEEEecCCCE-EEEEECCCCcEEEEEecCCCCc
Confidence 6 46666 999999999999986 667788899999999999999999999999999 9999999999888877652
Q ss_pred -eeeeecCCCCeEEEEe---ecCCeEEEEeCCCCCCCCeeeccC-CCCeEEEEEcCCCCEEEEEe-CCCcEEEEEECCCC
Q psy3710 229 -CVLCPNSNNSLLAFPG---RKSGHVHLVDLADPERPPLDIAAH-EAPLSCIALNQTGTRLATAS-YKGTLIRVFDTGSG 302 (424)
Q Consensus 229 -~~~~~~~~~~~~~~~~---~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~d~~~i~iwd~~~~ 302 (424)
....+.+++..++.+| +.|+.|++||+++...+......+ ...+....|++++++|++++ .|+. |++||+.++
T Consensus 214 ~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~-Iriwdl~~~ 292 (493)
T PTZ00421 214 SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN-IRCFELMNE 292 (493)
T ss_pred ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe-EEEEEeeCC
Confidence 3456777777777655 358999999999876555544333 34566678999999999887 4999 999999998
Q ss_pred ceeeee
Q psy3710 303 QKLNEL 308 (424)
Q Consensus 303 ~~~~~~ 308 (424)
+.+..+
T Consensus 293 ~~~~~~ 298 (493)
T PTZ00421 293 RLTFCS 298 (493)
T ss_pred ceEEEe
Confidence 876654
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-26 Score=190.96 Aligned_cols=360 Identities=13% Similarity=0.137 Sum_probs=264.8
Q ss_pred ccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCccccccc----ccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeE
Q psy3710 8 TYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQD----FTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 8 ~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 82 (424)
.-++.|..++|+|.+..|.+....+ +..|+.+.+....+.. .....|.+++|.++++.+- .. ++|.|
T Consensus 198 ~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT-gD-------S~G~i 269 (626)
T KOG2106|consen 198 TSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT-GD-------SGGNI 269 (626)
T ss_pred eccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe-ec-------CCceE
Confidence 3456788899999987777655555 9999988775533321 1346788899999888653 22 37999
Q ss_pred EEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEe
Q psy3710 83 MIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFP 159 (424)
Q Consensus 83 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (424)
.||+..+.+..+... |++.|.+++.-.+|.++.. |..|..|| .+.+.++..+.++....+..++....+ |++
T Consensus 270 ~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd--~~y~k~r~~elPe~~G~iRtv~e~~~d--i~v- 344 (626)
T KOG2106|consen 270 LIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWD--DNYRKLRETELPEQFGPIRTVAEGKGD--ILV- 344 (626)
T ss_pred EEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecc--ccccccccccCchhcCCeeEEecCCCc--EEE-
Confidence 999998877776655 9999999999999988886 88999999 356666666665555556666654333 665
Q ss_pred eccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCccee--eEEecceeeeeecCCC
Q psy3710 160 GRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL--NELRRGLCVLCPNSNN 237 (424)
Q Consensus 160 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~ 237 (424)
|...+.|..=.++.+ ......+|......++.+|+...+++++.|+. +++|+ ..+++ +.+..+..+..|+|.+
T Consensus 345 GTtrN~iL~Gt~~~~--f~~~v~gh~delwgla~hps~~q~~T~gqdk~-v~lW~--~~k~~wt~~~~d~~~~~~fhpsg 419 (626)
T KOG2106|consen 345 GTTRNFILQGTLENG--FTLTVQGHGDELWGLATHPSKNQLLTCGQDKH-VRLWN--DHKLEWTKIIEDPAECADFHPSG 419 (626)
T ss_pred eeccceEEEeeecCC--ceEEEEecccceeeEEcCCChhheeeccCcce-EEEcc--CCceeEEEEecCceeEeeccCcc
Confidence 888778777777763 44566789999999999999999999999999 99999 44444 4455678889999999
Q ss_pred CeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceee-----------
Q psy3710 238 SLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN----------- 306 (424)
Q Consensus 238 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~----------- 306 (424)
.++.|+..|...+.|.++.. .+ .+.....++++++|+|+|.+||.|+.|+. |+||.+..+....
T Consensus 420 --~va~Gt~~G~w~V~d~e~~~-lv-~~~~d~~~ls~v~ysp~G~~lAvgs~d~~-iyiy~Vs~~g~~y~r~~k~~gs~i 494 (626)
T KOG2106|consen 420 --VVAVGTATGRWFVLDTETQD-LV-TIHTDNEQLSVVRYSPDGAFLAVGSHDNH-IYIYRVSANGRKYSRVGKCSGSPI 494 (626)
T ss_pred --eEEEeeccceEEEEecccce-eE-EEEecCCceEEEEEcCCCCEEEEecCCCe-EEEEEECCCCcEEEEeeeecCcee
Confidence 44459999999999999843 23 33333889999999999999999999999 9999887543221
Q ss_pred ---eeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEe
Q psy3710 307 ---ELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVIC 383 (424)
Q Consensus 307 ---~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 383 (424)
.|++|++++.+-+.|-.|-.|......... ..+.+.+......-.+.++- -.++..+..++-+.+.+.|++|.
T Consensus 495 thLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~t---s~kDvkW~t~~c~lGF~v~g-~s~~t~i~a~~rs~~~~~lA~gd 570 (626)
T KOG2106|consen 495 THLDWSSDSQFLVSNSGDYEILYWKPSECKQIT---SVKDVKWATYTCTLGFEVFG-GSDGTDINAVARSHCEKLLASGD 570 (626)
T ss_pred EEeeecCCCceEEeccCceEEEEEccccCcccc---eecceeeeeeEEEEEEEEec-ccCCchHHHhhhhhhhhhhhccc
Confidence 367899999999999999999332222111 12222222111100010000 23455677888899999999999
Q ss_pred ccCcEEEEEec
Q psy3710 384 ADGSYYKFMFN 394 (424)
Q Consensus 384 ~dg~v~~~~~~ 394 (424)
+.|.|++|.++
T Consensus 571 d~g~v~lf~yP 581 (626)
T KOG2106|consen 571 DFGKVHLFSYP 581 (626)
T ss_pred cCceEEEEccc
Confidence 99999999986
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-28 Score=214.18 Aligned_cols=279 Identities=12% Similarity=0.158 Sum_probs=197.8
Q ss_pred ccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccc----------cCCCeeeEEEec---cCceEEEEeCCc
Q psy3710 8 TYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDF----------TDGGLGHVEMLF---RCNYLALVGGGT 73 (424)
Q Consensus 8 ~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~----------~~~~i~~~~~~~---~~~~l~~~~~~~ 73 (424)
+|.+.|.++.||+||+|||+|+.|+ |+||.+...+....... ..+.+..+.... .+.....-.+.
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~- 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS- 343 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc-
Confidence 8999999999999999999999999 99999765332111000 001111111111 00111110000
Q ss_pred CCCcCCCeEEEEECC----CCcEEEEEe-ecCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEE
Q psy3710 74 HPKYPNNRVMIWDDL----KKQVVICLE-FNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCV 146 (424)
Q Consensus 74 ~~~~~d~~i~iwd~~----~~~~~~~~~-~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 146 (424)
.... .+.+.. ..++++.+. |.+.|..+.|+.++.++.+ |.+|++|++. ...++..|... ..++|
T Consensus 344 ----~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~-~~~CL~~F~Hn---dfVTc 414 (712)
T KOG0283|consen 344 ----QSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPG-RKECLKVFSHN---DFVTC 414 (712)
T ss_pred ----CCcc-ccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCC-CcceeeEEecC---CeeEE
Confidence 0111 111111 345667777 8999999999999988876 9999999996 77888877543 56899
Q ss_pred EeecCC-CCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe
Q psy3710 147 LCPNSN-NSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR 225 (424)
Q Consensus 147 ~~~~~~-~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 225 (424)
++|+|- .+++++ |+-||.|+||++... .+.....-..-|++++|.|||+..+.|+.+|. +++|+....+....+.
T Consensus 415 VaFnPvDDryFiS-GSLD~KvRiWsI~d~--~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~-C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 415 VAFNPVDDRYFIS-GSLDGKVRLWSISDK--KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGY-CRFYDTEGLKLVSDFH 490 (712)
T ss_pred EEecccCCCcEee-cccccceEEeecCcC--eeEeehhhhhhheeEEeccCCceEEEEEeccE-EEEEEccCCeEEEeee
Confidence 999995 455555 999999999999873 44444444588999999999999999999999 9999998887765543
Q ss_pred ----------c-ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCC--CCeEEEEEcCCCCEEEEEeCCCc
Q psy3710 226 ----------R-GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHE--APLSCIALNQTGTRLATASYKGT 292 (424)
Q Consensus 226 ----------~-~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~ 292 (424)
+ .++.+.+.|....-++..+.|..|+|||.+... ++..++++. ..-....|+.||++|++++.|..
T Consensus 491 I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~-lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~ 569 (712)
T KOG0283|consen 491 IRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD-LVHKFKGFRNTSSQISASFSSDGKHIVSASEDSW 569 (712)
T ss_pred EeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh-hhhhhcccccCCcceeeeEccCCCEEEEeecCce
Confidence 1 167777877666544448999999999997654 344444432 22345689999999999999999
Q ss_pred EEEEEECCCC
Q psy3710 293 LIRVFDTGSG 302 (424)
Q Consensus 293 ~i~iwd~~~~ 302 (424)
|++|+....
T Consensus 570 -VYiW~~~~~ 578 (712)
T KOG0283|consen 570 -VYIWKNDSF 578 (712)
T ss_pred -EEEEeCCCC
Confidence 999998543
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-28 Score=207.63 Aligned_cols=344 Identities=17% Similarity=0.241 Sum_probs=255.8
Q ss_pred ccCCceE---EEEEC-CCCCeeEeecCCe-EEEEeCCcCcc------cccccccCCCeeeEEEeccCceEEEEeCCcCCC
Q psy3710 8 TYKNGLL---YAGFN-QDQGCFACGMEDG-FRIYNCDPLKE------KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPK 76 (424)
Q Consensus 8 ~h~~~V~---~~~~s-~~g~~la~g~~~~-i~iw~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 76 (424)
.|...|. .+..+ |.+++|.+|+.|| |++|+...... ....+.|..-+..+...-+++.+++++
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~S------ 92 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISAS------ 92 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEec------
Confidence 4555555 44444 4567799999999 99999764433 344566888899999999999999999
Q ss_pred cCCCeEEEEECCCC--cEEEEEe-ecCCeEEEEe-cCCceEEEe---eccEEEEeecCCC--ceeEEEe------eC-CC
Q psy3710 77 YPNNRVMIWDDLKK--QVVICLE-FNAPVKGVRL-RRDKIVVVL---EGLIKVYTFIQCP--QQLHVFE------TN-PN 140 (424)
Q Consensus 77 ~~d~~i~iwd~~~~--~~~~~~~-~~~~v~~~~~-~~~~~~~~~---~~~i~v~~~~~~~--~~~~~~~------~~-~~ 140 (424)
.|-+|++|+...+ -++.++. |..-|.|+++ .++...+++ |+.|.+||+. .+ +.+..+. .. ..
T Consensus 93 -sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin-~~~~~l~~s~n~~t~~sl~sG~ 170 (735)
T KOG0308|consen 93 -SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN-TGTATLVASFNNVTVNSLGSGP 170 (735)
T ss_pred -CCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEcc-CcchhhhhhccccccccCCCCC
Confidence 6899999999877 4566666 8999999999 777777776 8999999996 33 1222211 11 22
Q ss_pred CCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcce
Q psy3710 141 PKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK 220 (424)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~ 220 (424)
...+.+++.++.+..++. |+..+.+++||.++. +.+..+++|...|..+..++||..+++++.||+ |++||+...++
T Consensus 171 k~siYSLA~N~t~t~ivs-Ggtek~lr~wDprt~-~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQrC 247 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGTIIVS-GGTEKDLRLWDPRTC-KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQRC 247 (735)
T ss_pred ccceeeeecCCcceEEEe-cCcccceEEeccccc-cceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccccce
Confidence 345788999998877776 999999999999997 777888899999999999999999999999999 99999999999
Q ss_pred eeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy3710 221 LNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVF 297 (424)
Q Consensus 221 ~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iw 297 (424)
+.++..| +..+..+|+-. .+++|+.||.|+.-|+++...... +-..+.+|..+..+.+.+-+-+++.|+. |+-|
T Consensus 248 l~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n~~~~tl-ick~daPv~~l~~~~~~~~~WvtTtds~-I~rW 324 (735)
T KOG0308|consen 248 LATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLRNPAKSTL-ICKEDAPVLKLHLHEHDNSVWVTTTDSS-IKRW 324 (735)
T ss_pred eeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecccCCchhheE-eecCCCchhhhhhccccCCceeeecccc-ceec
Confidence 9998765 55566665544 455699999999999999753332 3346678888888866566678888998 9999
Q ss_pred ECCCCceeeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeec-CCCceEEEEecCC
Q psy3710 298 DTGSGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIP-SDPPCICAFGADS 376 (424)
Q Consensus 298 d~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~ 376 (424)
..+ ....+++.+++.. -+.|......+... .|. ...+ +..+...++-.|-
T Consensus 325 ~~~---~~~~l~~s~~~~~-~~T~~~~~~~~~~~---------------tp~----------~vi~Gg~ai~k~~mL~dk 375 (735)
T KOG0308|consen 325 KLE---PDIALSVSGDLDF-FSTDSNNHSCDLTN---------------TPD----------SVIPGGAAIKKHAMLNDK 375 (735)
T ss_pred CCc---cccccccCCCCCc-ccccCCCccccccC---------------CCc----------eeccCchhhhhhhhhcCc
Confidence 765 3335555555554 22333333444322 010 1111 1235556667788
Q ss_pred CeEEEEeccCcEEEEEec
Q psy3710 377 NSIIVICADGSYYKFMFN 394 (424)
Q Consensus 377 ~~l~~~~~dg~v~~~~~~ 394 (424)
+.+++=...|.+.+||+-
T Consensus 376 RhVlTkDa~gnv~lwDIl 393 (735)
T KOG0308|consen 376 RHVLTKDAKGNVALWDIL 393 (735)
T ss_pred ceEeeecCCCCEEEEEee
Confidence 999999999999999997
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-27 Score=192.68 Aligned_cols=264 Identities=16% Similarity=0.259 Sum_probs=218.0
Q ss_pred CCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCC
Q psy3710 100 APVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER 176 (424)
Q Consensus 100 ~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~ 176 (424)
..+.++...+....+.+ |..+.++|.. .++.+..+++|. ..++.+.++|+...+++ ++.|..|++|..... .
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~-s~q~l~~~~Gh~--kki~~v~~~~~~~~v~~-aSad~~i~vws~~~~-s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKP-SNQILATLKGHT--KKITSVKFHKDLDTVIT-ASADEIIRVWSVPLS-S 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecc-hhhhhhhccCcc--eEEEEEEeccchhheee-cCCcceEEeeccccc-c
Confidence 45677777775333333 7799999985 888999999988 55999999999998888 999999999999876 6
Q ss_pred CCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc-----eeeeeecCCCCeEEEEeecCCeEE
Q psy3710 177 PPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG-----LCVLCPNSNNSLLAFPGRKSGHVH 251 (424)
Q Consensus 177 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~dg~i~ 251 (424)
.......|..+|+.+..+|.|.||++++.|+. ..+.|++++..+...... ..+.+++|+|-.+. +|..||.++
T Consensus 295 ~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~-w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifg-tgt~d~~vk 372 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGT-WAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFG-TGTPDGVVK 372 (506)
T ss_pred CccccccccccceeeeeccCCcEEEEecCCce-EEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEe-ccCCCceEE
Confidence 77788899999999999999999999999999 999999999888766543 67788999886555 499999999
Q ss_pred EEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeee-------------eccCCcEEEEE
Q psy3710 252 LVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE-------------LRRDSSYLCVS 318 (424)
Q Consensus 252 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~-------------~~~~~~~l~~~ 318 (424)
|||+.++. ....+.+|.++|..++|+.+|-+|+++++|+. |++||++..+...+ |...|.+|+.+
T Consensus 373 iwdlks~~-~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 373 IWDLKSQT-NVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred EEEcCCcc-ccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhcccceeeccccccceeEEEcCCCCeEEee
Confidence 99999987 56778899999999999999999999999999 99999998766554 34678999999
Q ss_pred eCCCcEEEEEccccccccccccceeeeccCccccCCceee-EEeecCCCceEEEEecCCCeEEEEeccCcEEEEEe
Q psy3710 319 SDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFC-KFQIPSDPPCICAFGADSNSIIVICADGSYYKFMF 393 (424)
Q Consensus 319 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~ 393 (424)
+.|=+|++++-.+. .|... .+..|.+..+.+.|..+.+++++++.|..++++.+
T Consensus 451 g~~l~Vy~~~k~~k---------------------~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 451 GSDLQVYICKKKTK---------------------SWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceeEEEEEecccc---------------------cceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 88766666664331 12111 13345567788999999999999999999998865
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=202.59 Aligned_cols=302 Identities=16% Similarity=0.230 Sum_probs=233.2
Q ss_pred EEEEECCCCCeeEeecCCe-EEEEeCCcCccccc---ccccCCCeeeEEEecc-----------CceEEEEeCCcCCCcC
Q psy3710 14 LYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKER---QDFTDGGLGHVEMLFR-----------CNYLALVGGGTHPKYP 78 (424)
Q Consensus 14 ~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~---~~~~~~~i~~~~~~~~-----------~~~l~~~~~~~~~~~~ 78 (424)
-++.|++....|.+-..+. ++|||+.....+.. .-.|...|..+.-.|- ...+.+++ .
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS-------s 400 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCS-------S 400 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEec-------C
Confidence 4568999999999888888 99999987665432 3347777777776652 13355666 6
Q ss_pred CCeEEEEECCCC---cEEEE-----------------------------------EeecCCeEEEEecCCceEEEe---e
Q psy3710 79 NNRVMIWDDLKK---QVVIC-----------------------------------LEFNAPVKGVRLRRDKIVVVL---E 117 (424)
Q Consensus 79 d~~i~iwd~~~~---~~~~~-----------------------------------~~~~~~v~~~~~~~~~~~~~~---~ 117 (424)
|++|++||++.+ ...+. +.....+++++++|+++.+++ .
T Consensus 401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~ 480 (1080)
T KOG1408|consen 401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG 480 (1080)
T ss_pred CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc
Confidence 999999998752 11100 001235899999999999998 6
Q ss_pred ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecC---CCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEc
Q psy3710 118 GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNS---NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALN 194 (424)
Q Consensus 118 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 194 (424)
|+++||++. ..+....++.|... +.++.++. ..++|++ ++.|..|.+||+.....++.++.+|...|+++.|.
T Consensus 481 GnlrVy~Lq-~l~~~~~~eAHesE--ilcLeyS~p~~~~kLLAS-asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa 556 (1080)
T KOG1408|consen 481 GNLRVYDLQ-ELEYTCFMEAHESE--ILCLEYSFPVLTNKLLAS-ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFA 556 (1080)
T ss_pred CceEEEEeh-hhhhhhheecccce--eEEEeecCchhhhHhhhh-ccCCceEEEEecccccchhhhhcccccceeEEEEe
Confidence 899999996 66777778888754 77777653 2456666 99999999999998777888999999999999999
Q ss_pred cCC--CEEEEEecCCcEEEEEECCC-cceeeEEec--------ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCe
Q psy3710 195 QTG--TRLATASYKGTLIRVFDTGS-GQKLNELRR--------GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL 263 (424)
Q Consensus 195 ~~~--~~l~~~~~d~~~i~iwd~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~ 263 (424)
.+| ..+++++.|+. |. |+... ...-..+.. ...-+.+.|..++++. +..|..|+|||+.+++.. +
T Consensus 557 ~~gln~~MiscGADks-im-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t-~cQDrnirif~i~sgKq~-k 632 (1080)
T KOG1408|consen 557 CNGLNRKMISCGADKS-IM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT-VCQDRNIRIFDIESGKQV-K 632 (1080)
T ss_pred ecCCceEEEeccCchh-hh-eehhccccCceeccccccccccceEEEeeeCCCcceEEE-EecccceEEEecccccee-e
Confidence 887 78999999997 54 44332 111222221 2556788888877766 999999999999998853 3
Q ss_pred ee---ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeee------------eccCCcEEEEEeCCCcEEEEE
Q psy3710 264 DI---AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE------------LRRDSSYLCVSSDHGTVHVFS 328 (424)
Q Consensus 264 ~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~------------~~~~~~~l~~~~~d~~i~iw~ 328 (424)
.+ ..|++....+...|.|.|+|+.+.|.+ +.++|..+|+++.+ |.+|-+.|++.+.||.|.||.
T Consensus 633 ~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt-l~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 633 SFKGSRDHEGDLIKVILDPSGIYLATSCSDKT-LCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred eecccccCCCceEEEEECCCccEEEEeecCCc-eEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 33 357788889999999999999999999 99999999999875 678899999999999999999
Q ss_pred ccc
Q psy3710 329 VDE 331 (424)
Q Consensus 329 ~~~ 331 (424)
+..
T Consensus 712 lp~ 714 (1080)
T KOG1408|consen 712 LPL 714 (1080)
T ss_pred Cch
Confidence 876
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=208.43 Aligned_cols=266 Identities=20% Similarity=0.301 Sum_probs=215.4
Q ss_pred CCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEE-Ee-ecCCeEEEEecC--CceEEEe-eccEEEEee
Q psy3710 51 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVIC-LE-FNAPVKGVRLRR--DKIVVVL-EGLIKVYTF 125 (424)
Q Consensus 51 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-~~-~~~~v~~~~~~~--~~~~~~~-~~~i~v~~~ 125 (424)
...+.+..|. .+++.+.+ .|++|.+|+..++..+.. +. |.+.|+++++.. +-.+.++ |.++++||.
T Consensus 208 ~~~~~~~q~~--~~~~~~~s-------~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGS-------DDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC 278 (537)
T ss_pred cchhhhheee--cCeEEecC-------CCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence 4445444554 45555555 479999999999999887 76 899999999985 3344444 999999998
Q ss_pred cCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEec
Q psy3710 126 IQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY 205 (424)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 205 (424)
. ++++...+.+|... +.++.. ....++. |+.|.+|++|++.++ ..+..+.+|.++|.++..+ +.++++|+.
T Consensus 279 ~-sg~C~~~l~gh~st--v~~~~~--~~~~~~s-gs~D~tVkVW~v~n~-~~l~l~~~h~~~V~~v~~~--~~~lvsgs~ 349 (537)
T KOG0274|consen 279 S-TGECTHSLQGHTSS--VRCLTI--DPFLLVS-GSRDNTVKVWDVTNG-ACLNLLRGHTGPVNCVQLD--EPLLVSGSY 349 (537)
T ss_pred C-CCcEEEEecCCCce--EEEEEc--cCceEee-ccCCceEEEEeccCc-ceEEEeccccccEEEEEec--CCEEEEEec
Confidence 6 99999999988754 555543 3444554 899999999999986 7788888899999999998 789999999
Q ss_pred CCcEEEEEECCCcceeeEEecceee-eeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEE
Q psy3710 206 KGTLIRVFDTGSGQKLNELRRGLCV-LCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRL 284 (424)
Q Consensus 206 d~~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 284 (424)
|+. |++||+.+++++..+.+|... .++..++...+++|+.|++|++||+++....+..+.+|..-+..+.+ .+++|
T Consensus 350 d~~-v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~L 426 (537)
T KOG0274|consen 350 DGT-VKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFL 426 (537)
T ss_pred Cce-EEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--cccee
Confidence 999 999999999999999988332 23333332777889999999999999985567788899998876665 56799
Q ss_pred EEEeCCCcEEEEEECCCCceeeeeccC-----------CcEEEEEeCCCcEEEEEcccccccccc
Q psy3710 285 ATASYKGTLIRVFDTGSGQKLNELRRD-----------SSYLCVSSDHGTVHVFSVDEAQKINKQ 338 (424)
Q Consensus 285 ~~~~~d~~~i~iwd~~~~~~~~~~~~~-----------~~~l~~~~~d~~i~iw~~~~~~~~~~~ 338 (424)
++++.|+. |++||..+++++..+... ...+++++.|+.+++||+.+++.....
T Consensus 427 vs~~aD~~-Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 427 VSSSADGT-IKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred Eecccccc-EEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhhhh
Confidence 99999999 999999999999887652 267888899999999999998877654
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=182.54 Aligned_cols=287 Identities=15% Similarity=0.173 Sum_probs=213.5
Q ss_pred eEEEEECCCCcEEEE-----Ee-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCce-eEEEeeCCCCCeeEEEeec
Q psy3710 81 RVMIWDDLKKQVVIC-----LE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQ-LHVFETNPNPKGLCVLCPN 150 (424)
Q Consensus 81 ~i~iwd~~~~~~~~~-----~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 150 (424)
...-|+.+.....+. ++ |...|++++|+.||+.+++ |+.|++|+++.-... -+.++..-.....+.+.|.
T Consensus 62 r~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fa 141 (420)
T KOG2096|consen 62 RNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFA 141 (420)
T ss_pred chhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEEC
Confidence 355566555544443 33 7899999999999999987 999999999631111 1112211111234677899
Q ss_pred CCCCeEEEeeccCCeEEEEeCCCCCC---CC--------cccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcc
Q psy3710 151 SNNSLLAFPGRKSGHVHLVDLADPER---PP--------LDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ 219 (424)
Q Consensus 151 ~~~~~l~~~~~~dg~i~i~d~~~~~~---~~--------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~ 219 (424)
||.+-++++.....++++|.+..... .. ..-+.|.-.+.++-...++.+|++++.|.. |.+|+++ |+
T Consensus 142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~-i~lw~lk-Gq 219 (420)
T KOG2096|consen 142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTK-ICLWDLK-GQ 219 (420)
T ss_pred CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCc-EEEEecC-Cc
Confidence 99998888677778899998764311 10 112346777888888888999999999999 9999998 88
Q ss_pred eeeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCC-------CCCeeeccCCCCeEEEEEcCCCCEEEEEeC
Q psy3710 220 KLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE-------RPPLDIAAHEAPLSCIALNQTGTRLATASY 289 (424)
Q Consensus 220 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 289 (424)
.+..+... ....+++|+|.++++ ++..-.+++|.+--.+ .....+++|.+.|..++|+|+...+++.|.
T Consensus 220 ~L~~idtnq~~n~~aavSP~GRFia~-~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk 298 (420)
T KOG2096|consen 220 LLQSIDTNQSSNYDAAVSPDGRFIAV-SGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK 298 (420)
T ss_pred eeeeeccccccccceeeCCCCcEEEE-ecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec
Confidence 88877654 455788999998888 5667789999874322 224567899999999999999999999999
Q ss_pred CCcEEEEEECCCC-------c----------------eeeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeec
Q psy3710 290 KGTLIRVFDTGSG-------Q----------------KLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASF 346 (424)
Q Consensus 290 d~~~i~iwd~~~~-------~----------------~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 346 (424)
||+ +|+||+.-. + +..+++|+|+.|+.+. ...+++|..++|+.....
T Consensus 299 DG~-wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~-------- 368 (420)
T KOG2096|consen 299 DGK-WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPEL-------- 368 (420)
T ss_pred CCc-EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhH--------
Confidence 999 999998521 1 1224678999888765 457999999998764432
Q ss_pred cCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 347 LPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
.++|.+.|+.++|+++|+++++++ |..++++.-.
T Consensus 369 -------------e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~nt 402 (420)
T KOG2096|consen 369 -------------EDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNT 402 (420)
T ss_pred -------------HHhhcCceeeEEecCCCcEEeeec-ceeeeeecCC
Confidence 235778899999999999999988 8899998854
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-26 Score=181.27 Aligned_cols=255 Identities=16% Similarity=0.238 Sum_probs=201.8
Q ss_pred cCCeEEEEecCC-ceEE-Ee--eccEEEEeecCCCceeE-EEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCC
Q psy3710 99 NAPVKGVRLRRD-KIVV-VL--EGLIKVYTFIQCPQQLH-VFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLAD 173 (424)
Q Consensus 99 ~~~v~~~~~~~~-~~~~-~~--~~~i~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~ 173 (424)
.+.|.+++|||. ..++ ++ |++|++|++...+.... ....+. ..+.+++|+.||..+++ |+.|+.+++||+.+
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~--~PvL~v~WsddgskVf~-g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD--GPVLDVCWSDDGSKVFS-GGCDKQAKLWDLAS 103 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccC--CCeEEEEEccCCceEEe-eccCCceEEEEccC
Confidence 567999999994 3344 43 99999999975444333 233344 44899999999999988 99999999999999
Q ss_pred CCCCCcccccccCCeEEEEEccCCC--EEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEE
Q psy3710 174 PERPPLDIAAHEAPLSCIALNQTGT--RLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVH 251 (424)
Q Consensus 174 ~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~ 251 (424)
+ ....+..|.++|..+.|-+... .|++||.|++ |+.||++...++.++..+-++.+.+-....+++ +..+..|.
T Consensus 104 ~--Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKT-lKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vV-ata~r~i~ 179 (347)
T KOG0647|consen 104 G--QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKT-LKFWDTRSSNPVATLQLPERVYAADVLYPMAVV-ATAERHIA 179 (347)
T ss_pred C--CeeeeeecccceeEEEEecCCCcceeEecccccc-eeecccCCCCeeeeeeccceeeehhccCceeEE-EecCCcEE
Confidence 5 6678889999999999988665 8999999999 999999999999999888777777666666665 89999999
Q ss_pred EEeCCCCCCCCeee-ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeee-----------------------
Q psy3710 252 LVDLADPERPPLDI-AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE----------------------- 307 (424)
Q Consensus 252 i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~----------------------- 307 (424)
+|+++++....+.. ...+-.+.|++..+|....|.|+-+|. +-+..+..+.....
T Consensus 180 vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 180 VYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence 99998765433322 234557899999999888899999999 99988877532221
Q ss_pred eccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEe
Q psy3710 308 LRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVIC 383 (424)
Q Consensus 308 ~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 383 (424)
|.|.-..|++++.||++.+||-+...++.. .+.+..+|++++|+.+|.+++.+.
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~----------------------s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKT----------------------SETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhhhc----------------------cCcCCCccceeEecCCCCEEEEEe
Confidence 345567899999999999999887665443 233567899999999999887654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-26 Score=205.32 Aligned_cols=211 Identities=15% Similarity=0.119 Sum_probs=168.5
Q ss_pred cccccCCceEEEEECC-CCCeeEeecCCe-EEEEeCCcCc-------ccccccccCCCeeeEEEeccC-ceEEEEeCCcC
Q psy3710 5 TSSTYKNGLLYAGFNQ-DQGCFACGMEDG-FRIYNCDPLK-------EKERQDFTDGGLGHVEMLFRC-NYLALVGGGTH 74 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~-~g~~la~g~~~~-i~iw~~~~~~-------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~ 74 (424)
.+.+|.+.|++++|+| ++.+||+|+.|+ |++||+.+.. .+.....|...|..++|.|++ +.+++++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs---- 145 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG---- 145 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe----
Confidence 4789999999999999 889999999999 9999987653 233455688999999999986 5677766
Q ss_pred CCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeec
Q psy3710 75 PKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPN 150 (424)
Q Consensus 75 ~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (424)
.|++|+|||+++++.+..+. |...|.+++|+|++.++++ |+.|++||++ +++.+..+..|.... .....|.
T Consensus 146 ---~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~r-sg~~v~tl~~H~~~~-~~~~~w~ 220 (493)
T PTZ00421 146 ---ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR-DGTIVSSVEAHASAK-SQRCLWA 220 (493)
T ss_pred ---CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECC-CCcEEEEEecCCCCc-ceEEEEc
Confidence 58999999999999888887 8889999999999987775 8999999997 677777787776443 2345677
Q ss_pred CCCCeEEEee---ccCCeEEEEeCCCCCCCCcccccc-cCCeEEEEEccCCCEEEEEec-CCcEEEEEECCCcceeeEEe
Q psy3710 151 SNNSLLAFPG---RKSGHVHLVDLADPERPPLDIAAH-EAPLSCIALNQTGTRLATASY-KGTLIRVFDTGSGQKLNELR 225 (424)
Q Consensus 151 ~~~~~l~~~~---~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d~~~i~iwd~~~~~~~~~~~ 225 (424)
+++..++++| +.|+.|++||+++...+......+ ...+....|++++++|++++. |+. |++||+.+++.+....
T Consensus 221 ~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~-Iriwdl~~~~~~~~~~ 299 (493)
T PTZ00421 221 KRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN-IRCFELMNERLTFCSS 299 (493)
T ss_pred CCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe-EEEEEeeCCceEEEee
Confidence 8877777645 358999999998764454444333 345666778999999998874 999 9999999988766543
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-27 Score=213.78 Aligned_cols=264 Identities=18% Similarity=0.167 Sum_probs=202.8
Q ss_pred cccccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCc----------C--------cccccccccCCCeeeEEEeccC
Q psy3710 3 LGTSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDP----------L--------KEKERQDFTDGGLGHVEMLFRC 63 (424)
Q Consensus 3 ~~~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~----------~--------~~~~~~~~~~~~i~~~~~~~~~ 63 (424)
+.....|.+.|+|+.|+|||++||+|++|. |.||.... + +.......|++.|..++|+|++
T Consensus 62 l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~ 141 (942)
T KOG0973|consen 62 LCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD 141 (942)
T ss_pred heeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc
Confidence 445778999999999999999999999999 99999763 0 0122345589999999999999
Q ss_pred ceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCC
Q psy3710 64 NYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNP 139 (424)
Q Consensus 64 ~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~ 139 (424)
.++++++ .|++|.|||..+.+.+..+. |.+.|..+.|.|-|+++|+ |++|++|++. +....+.+..+.
T Consensus 142 ~~lvS~s-------~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~-dw~i~k~It~pf 213 (942)
T KOG0973|consen 142 SLLVSVS-------LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS-DWGIEKSITKPF 213 (942)
T ss_pred cEEEEec-------ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcc-cceeeEeeccch
Confidence 9999999 68999999999999999888 9999999999999999998 8999999975 455555554433
Q ss_pred C----CCeeEEEeecCCCCeEEEeeccC---CeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEec-CCcEEE
Q psy3710 140 N----PKGLCVLCPNSNNSLLAFPGRKS---GHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY-KGTLIR 211 (424)
Q Consensus 140 ~----~~~~~~~~~~~~~~~l~~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~~i~ 211 (424)
. ......+.|+|||++|++.-+.+ ..+.|.+-.+- +.-..+-+|.+++.+++|+|. |+-.-. +|+
T Consensus 214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tW-k~~~~LvGH~~p~evvrFnP~---lfe~~~~ng~--- 286 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTW-KVDKDLVGHSAPVEVVRFNPK---LFERNNKNGT--- 286 (942)
T ss_pred hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCc-eeeeeeecCCCceEEEEeChH---HhccccccCC---
Confidence 2 23466889999999999843333 35677776554 556678899999999999982 111000 221
Q ss_pred EEECCCcceeeEEecceeeeeecCCCC-eEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCC
Q psy3710 212 VFDTGSGQKLNELRRGLCVLCPNSNNS-LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK 290 (424)
Q Consensus 212 iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 290 (424)
..+. +.. .++++|+.|++|-||.....+.......-....|..++|+|||..|+.+|.|
T Consensus 287 -----~~~~---------------~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~D 346 (942)
T KOG0973|consen 287 -----STQP---------------NCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLD 346 (942)
T ss_pred -----ccCC---------------CcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecC
Confidence 0000 001 2566688888888888876664443333456789999999999999999999
Q ss_pred CcEEEEEECCCC
Q psy3710 291 GTLIRVFDTGSG 302 (424)
Q Consensus 291 ~~~i~iwd~~~~ 302 (424)
|+ |.+..++..
T Consensus 347 Gt-V~~i~Fee~ 357 (942)
T KOG0973|consen 347 GT-VALIHFEEK 357 (942)
T ss_pred Ce-EEEEEcchH
Confidence 99 999998764
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=198.58 Aligned_cols=205 Identities=11% Similarity=0.057 Sum_probs=151.5
Q ss_pred ccccccCCceEEEEECCC-CCeeEeecCCe-EEEEeCCcCccccc------ccccCCCeeeEEEeccCceEEEEeCCcCC
Q psy3710 4 GTSSTYKNGLLYAGFNQD-QGCFACGMEDG-FRIYNCDPLKEKER------QDFTDGGLGHVEMLFRCNYLALVGGGTHP 75 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~-g~~la~g~~~~-i~iw~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 75 (424)
..|.+|.+.|+.+.|+|- ..+||+++.|. |+||.+..+..... .....-.+.++.|.|..+.++..+.
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a---- 148 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA---- 148 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEecc----
Confidence 347899999999999995 46788999999 99999874433211 1112346788999999888877773
Q ss_pred CcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecC
Q psy3710 76 KYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNS 151 (424)
Q Consensus 76 ~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (424)
-+.++|||+.+++.+.++. |...|.++.|+.||.++++ |..|+|||.+..++.++..++|.+.. -..+.|.-
T Consensus 149 ---~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~r-dsRv~w~G 224 (1012)
T KOG1445|consen 149 ---HGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMR-DSRVLWAG 224 (1012)
T ss_pred ---CceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccch-hheeeecc
Confidence 5899999999999999988 8999999999999999987 88999999998889999888887653 33455554
Q ss_pred CCCeEEEeecc---CCeEEEEeCCCCCCCCccccc-ccCCeEEEEEccCCCEEEEEec-CCcEEEEEECCC
Q psy3710 152 NNSLLAFPGRK---SGHVHLVDLADPERPPLDIAA-HEAPLSCIALNQTGTRLATASY-KGTLIRVFDTGS 217 (424)
Q Consensus 152 ~~~~l~~~~~~---dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-d~~~i~iwd~~~ 217 (424)
+-..|+++|.. -..|++||.+....+..++.- ....|.---|.||.++|+.++. +.+ +..+.+..
T Consensus 225 n~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~-l~~lE~~d 294 (1012)
T KOG1445|consen 225 NWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNK-LFMLEMQD 294 (1012)
T ss_pred chhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcce-EEEEEecC
Confidence 44566664544 356889999876556655442 2233455567888777665554 444 77766643
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-25 Score=201.09 Aligned_cols=220 Identities=14% Similarity=0.175 Sum_probs=167.7
Q ss_pred CCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCC-ceEEEe---eccEEEEeecCCCc-------eeEEEeeCCCCCeeE
Q psy3710 78 PNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRD-KIVVVL---EGLIKVYTFIQCPQ-------QLHVFETNPNPKGLC 145 (424)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~-~~~~~~---~~~i~v~~~~~~~~-------~~~~~~~~~~~~~~~ 145 (424)
.++.+++|+..+...+..+. |.+.|.+++|+|+ +.++++ |+.|++||+..... ++..+.+|. ..+.
T Consensus 52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~--~~V~ 129 (568)
T PTZ00420 52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK--KKIS 129 (568)
T ss_pred ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC--CcEE
Confidence 47899999988877777777 8899999999996 555554 99999999963221 233456665 4488
Q ss_pred EEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe
Q psy3710 146 VLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR 225 (424)
Q Consensus 146 ~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 225 (424)
+++|+|++..++++++.|+.|++||++++ +....+. |...|.+++|+|+|.+|++++.|+. |++||+++++.+.++.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg-~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~-IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENE-KRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKH-MHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCC-cEEEEEe-cCCcEEEEEECCCCCEEEEEecCCE-EEEEECCCCcEEEEEe
Confidence 99999999877655899999999999986 4444444 6678999999999999999999999 9999999999988887
Q ss_pred ccee---e-----eeecCCCCeEEEEeecC---CeEEEEeCCCCCCCCeeec--cCCCCeEEEEEcCCCCEEEEEeCCCc
Q psy3710 226 RGLC---V-----LCPNSNNSLLAFPGRKS---GHVHLVDLADPERPPLDIA--AHEAPLSCIALNQTGTRLATASYKGT 292 (424)
Q Consensus 226 ~~~~---~-----~~~~~~~~~~~~~~~~d---g~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~ 292 (424)
.+.. . ..+++++..++.+|..+ ++|++||++....++..+. .+.+.+......++|.++++|+.|++
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t 286 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN 286 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe
Confidence 6521 1 22346777777755544 4799999997655555432 23333444444556889999999999
Q ss_pred EEEEEECCCCc
Q psy3710 293 LIRVFDTGSGQ 303 (424)
Q Consensus 293 ~i~iwd~~~~~ 303 (424)
|++|++..+.
T Consensus 287 -Ir~~e~~~~~ 296 (568)
T PTZ00420 287 -CRYYQHSLGS 296 (568)
T ss_pred -EEEEEccCCc
Confidence 9999998764
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-27 Score=208.09 Aligned_cols=300 Identities=20% Similarity=0.256 Sum_probs=228.0
Q ss_pred ecCCeEEEEecCCceEEE--eeccEEEEeecCCCceeE---EEeeCCC-CCeeEEEeecC-CCCeEEEeeccCCeEEEEe
Q psy3710 98 FNAPVKGVRLRRDKIVVV--LEGLIKVYTFIQCPQQLH---VFETNPN-PKGLCVLCPNS-NNSLLAFPGRKSGHVHLVD 170 (424)
Q Consensus 98 ~~~~v~~~~~~~~~~~~~--~~~~i~v~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~-~~~~l~~~~~~dg~i~i~d 170 (424)
......++..+++..-++ ....+++|.+.+...... .++.... ...+..+.|+. +.++||+ ++..|.|.+||
T Consensus 38 ~k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT-~s~nG~i~vWd 116 (839)
T KOG0269|consen 38 LKAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIAT-CSTNGVISVWD 116 (839)
T ss_pred cccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhhee-ecCCCcEEEEe
Confidence 355667777777764443 366788888754332211 1111111 11223444543 4556776 99999999999
Q ss_pred CCC--CCCCCcccccccCCeEEEEEccC-CCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEe
Q psy3710 171 LAD--PERPPLDIAAHEAPLSCIALNQT-GTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPG 244 (424)
Q Consensus 171 ~~~--~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 244 (424)
+.. ..+.+..+..|+..++++.|++. ..+|++|++||. |++||++..+...++... ++-+.|+|.....++++
T Consensus 117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~-vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~ 195 (839)
T KOG0269|consen 117 LNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGT-VKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASI 195 (839)
T ss_pred cCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCce-EEEEeeecccccccccccchhhhceeeccCCCceEEEe
Confidence 987 33566688999999999999984 578999999999 999999998888777754 67789999999999999
Q ss_pred ecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceee-------------eeccC
Q psy3710 245 RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN-------------ELRRD 311 (424)
Q Consensus 245 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~-------------~~~~~ 311 (424)
.+.|.+++||++.+......+.+|.++|.++.|+|++.+||||+.|+. |+|||..+++... .|+|+
T Consensus 196 ~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~~~~~~~tInTiapv~rVkWRP~ 274 (839)
T KOG0269|consen 196 HDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDSRAKPKHTINTIAPVGRVKWRPA 274 (839)
T ss_pred cCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCCCccceeEEeecceeeeeeeccC
Confidence 999999999999999888888899999999999999999999999999 9999998654321 25566
Q ss_pred CcE-EEEEe--CCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEec-CCCeEEEEeccCc
Q psy3710 312 SSY-LCVSS--DHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGA-DSNSIIVICADGS 387 (424)
Q Consensus 312 ~~~-l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~ 387 (424)
..+ |++++ .|-.|+|||+... |+|. +.+.-|...++.++|.. |...|.+++.||+
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrRP-------------YIP~--------~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~t 333 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRRP-------------YIPY--------ATFLEHTDSVTGIAWDSGDRINLWSCSKDGT 333 (839)
T ss_pred ccchhhhhhccccceEEEEeeccc-------------cccc--------eeeeccCccccceeccCCCceeeEeecCccH
Confidence 554 55554 4789999999872 4443 45677888899999976 6678899999999
Q ss_pred EEEEEecCCcceeeeeehhhheecCCCceeeEEE
Q psy3710 388 YYKFMFNSKGECWRDVYIQFLEMTNDSNLLSCIE 421 (424)
Q Consensus 388 v~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 421 (424)
|..-.+.....++.......+.++++|.+....+
T Consensus 334 v~qh~~knat~pid~a~~~~~s~g~~g~l~fa~n 367 (839)
T KOG0269|consen 334 VLQHLFKNATTPIDLANNGGLSVGQFGDLYFAVN 367 (839)
T ss_pred HHHhhhhcccChhhhcCcccccccccCceeEEec
Confidence 9888887666666666666777777777655544
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=182.29 Aligned_cols=284 Identities=13% Similarity=0.137 Sum_probs=223.4
Q ss_pred eEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCc
Q psy3710 13 LLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ 91 (424)
Q Consensus 13 V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~ 91 (424)
-.|+.||+-|.+||+|..+| |.|||..+...-.....|..+|++++|++++..|++++ .|..|.+||+..|.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS-------~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSS-------RDWSIKLWDLLKGS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeec-------CCceeEEEeccCCC
Confidence 78999999999999999999 99999999988777888999999999999999999999 68999999999999
Q ss_pred EEEEEeecCCeEEEEecCCc--eEEEe--eccEEEEeecCCCceeEEEeeCCC---CCeeEEEeecCCCCeEEEeeccCC
Q psy3710 92 VVICLEFNAPVKGVRLRRDK--IVVVL--EGLIKVYTFIQCPQQLHVFETNPN---PKGLCVLCPNSNNSLLAFPGRKSG 164 (424)
Q Consensus 92 ~~~~~~~~~~v~~~~~~~~~--~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~dg 164 (424)
+++.+.+.++|+.+.|+|.. ..+++ +..-.+.++. + .....+..... .....+..+.+.|+++++ |...|
T Consensus 99 ~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s-~-~~h~~Lp~d~d~dln~sas~~~fdr~g~yIit-GtsKG 175 (405)
T KOG1273|consen 99 PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFS-D-PKHSVLPKDDDGDLNSSASHGVFDRRGKYIIT-GTSKG 175 (405)
T ss_pred ceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEec-C-CceeeccCCCccccccccccccccCCCCEEEE-ecCcc
Confidence 99999999999999999864 56665 5556666664 2 11112221111 111122357889999998 99999
Q ss_pred eEEEEeCCCCCCCCccccccc-CCeEEEEEccCCCEEEEEecCCcEEEEEECCCc-------c--eeeEEe-----ccee
Q psy3710 165 HVHLVDLADPERPPLDIAAHE-APLSCIALNQTGTRLATASYKGTLIRVFDTGSG-------Q--KLNELR-----RGLC 229 (424)
Q Consensus 165 ~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~-------~--~~~~~~-----~~~~ 229 (424)
.+.++|..+. +.+..++-.. ..|..+.++..|+.|+.-+.|.. |+.|+++.- + +.+.+. ..-.
T Consensus 176 kllv~~a~t~-e~vas~rits~~~IK~I~~s~~g~~liiNtsDRv-IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk 253 (405)
T KOG1273|consen 176 KLLVYDAETL-ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRV-IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWK 253 (405)
T ss_pred eEEEEecchh-eeeeeeeechheeeeEEEEeccCcEEEEecCCce-EEEEehhhhcccCccCCcChhHHHHHHHhhhhhh
Confidence 9999999986 6777666555 78999999999999999999999 999998621 1 112221 2246
Q ss_pred eeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeee
Q psy3710 230 VLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHE-APLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNEL 308 (424)
Q Consensus 230 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~ 308 (424)
.+||+.+|.+++++......++||....+. .++.+.+.+ .....+.|+|-...+++- ..|. +++|....-+.-..|
T Consensus 254 ~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs-LVKILhG~kgE~l~DV~whp~rp~i~si-~sg~-v~iw~~~~~enwsaf 330 (405)
T KOG1273|consen 254 KCCFSGDGEYVCAGSARAHALYIWEKSIGS-LVKILHGTKGEELLDVNWHPVRPIIASI-ASGV-VYIWAVVQVENWSAF 330 (405)
T ss_pred heeecCCccEEEeccccceeEEEEecCCcc-eeeeecCCchhheeecccccceeeeeec-cCCc-eEEEEeecccchhhc
Confidence 789999999999877778899999988876 456666665 567889999988788777 6666 999998776666666
Q ss_pred ccC
Q psy3710 309 RRD 311 (424)
Q Consensus 309 ~~~ 311 (424)
.|+
T Consensus 331 APd 333 (405)
T KOG1273|consen 331 APD 333 (405)
T ss_pred Cch
Confidence 654
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-24 Score=164.08 Aligned_cols=278 Identities=13% Similarity=0.177 Sum_probs=215.4
Q ss_pred cccCCceEEEEECCCCCeeEeecCCe-EEEEeC------CcCcc---------cccccccCCCeeeEEEeccCceEEEEe
Q psy3710 7 STYKNGLLYAGFNQDQGCFACGMEDG-FRIYNC------DPLKE---------KERQDFTDGGLGHVEMLFRCNYLALVG 70 (424)
Q Consensus 7 ~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~------~~~~~---------~~~~~~~~~~i~~~~~~~~~~~l~~~~ 70 (424)
...+..|.+++|+|.|.+.|+|+... ++|-.. ....+ ..+..+|.+.|.+.+|+|.+..+++.+
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 34567899999999999999999887 666542 11111 122445899999999999999999888
Q ss_pred CCcCCCcCCCeEEEEECCCCcEE-----EEEe-ecCCeEEEEecCC----ceEEEe----eccEEEEeecCCCceeEEEe
Q psy3710 71 GGTHPKYPNNRVMIWDDLKKQVV-----ICLE-FNAPVKGVRLRRD----KIVVVL----EGLIKVYTFIQCPQQLHVFE 136 (424)
Q Consensus 71 ~~~~~~~~d~~i~iwd~~~~~~~-----~~~~-~~~~v~~~~~~~~----~~~~~~----~~~i~v~~~~~~~~~~~~~~ 136 (424)
.|++|++...+...+- .++. |.+.|+.++|-.+ +.++++ |..|++-|.. .++..+.+.
T Consensus 109 -------ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~-~g~~~~a~s 180 (350)
T KOG0641|consen 109 -------NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG-RGQGFHALS 180 (350)
T ss_pred -------CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC-CCCcceeec
Confidence 6899999765432221 2344 8899999999643 456665 5677777775 788888888
Q ss_pred eCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCccccc-------ccCCeEEEEEccCCCEEEEEecCCcE
Q psy3710 137 TNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAA-------HEAPLSCIALNQTGTRLATASYKGTL 209 (424)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~~ 209 (424)
+|.+. +.++. +-++-.+++ |+.|.+|++||++-. ..+..+.. ....|.+++..|.|++|++|-.|..
T Consensus 181 ghtgh--ilaly-swn~~m~~s-gsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss- 254 (350)
T KOG0641|consen 181 GHTGH--ILALY-SWNGAMFAS-GSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS- 254 (350)
T ss_pred CCccc--EEEEE-EecCcEEEc-cCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-
Confidence 88754 54432 334666666 999999999999865 44443321 2467999999999999999999999
Q ss_pred EEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCC---CCCCeeeccCCCCeEEEEEcCCCCE
Q psy3710 210 IRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADP---ERPPLDIAAHEAPLSCIALNQTGTR 283 (424)
Q Consensus 210 i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~ 283 (424)
..+||++.++.++.+..+ +.++.|+|...+++. ++.|..|++-|+... +.+......|+..+..+.|+|..-.
T Consensus 255 c~lydirg~r~iq~f~phsadir~vrfsp~a~yllt-~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~s 333 (350)
T KOG0641|consen 255 CMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLT-CSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFS 333 (350)
T ss_pred eEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEE-ecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccce
Confidence 999999999999998765 788888887766654 999999999999864 3455667789999999999999999
Q ss_pred EEEEeCCCcEEEEEECC
Q psy3710 284 LATASYKGTLIRVFDTG 300 (424)
Q Consensus 284 l~~~~~d~~~i~iwd~~ 300 (424)
+++.+.|.+ +.+|-+.
T Consensus 334 fisssadkt-~tlwa~~ 349 (350)
T KOG0641|consen 334 FISSSADKT-ATLWALN 349 (350)
T ss_pred eeeccCcce-EEEeccC
Confidence 999999999 9999764
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-25 Score=200.01 Aligned_cols=239 Identities=10% Similarity=0.112 Sum_probs=178.0
Q ss_pred cCCe-EEEEeCCcCcccccccccCCCeeeEEEecc-CceEEEEeCCcCCCcCCCeEEEEECCCCc--------EEEEEe-
Q psy3710 29 MEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFR-CNYLALVGGGTHPKYPNNRVMIWDDLKKQ--------VVICLE- 97 (424)
Q Consensus 29 ~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~~~~~d~~i~iwd~~~~~--------~~~~~~- 97 (424)
+..+ +++|+......+.....|.+.|.+++|+|+ ++.+++++ .|++|++||+.++. .+..+.
T Consensus 51 G~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS-------~DgtIrIWDi~t~~~~~~~i~~p~~~L~g 123 (568)
T PTZ00420 51 GLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGS-------EDLTIRVWEIPHNDESVKEIKDPQCILKG 123 (568)
T ss_pred CceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEe-------CCCeEEEEECCCCCccccccccceEEeec
Confidence 3344 899987766555556778999999999997 67787777 68999999997642 233444
Q ss_pred ecCCeEEEEecCCceE-EEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCC
Q psy3710 98 FNAPVKGVRLRRDKIV-VVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLAD 173 (424)
Q Consensus 98 ~~~~v~~~~~~~~~~~-~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~ 173 (424)
|...|.+++|+|++.. +++ |+.|++||++ .++....+.. . ..+.+++|+|+|.+|++ ++.|+.|++||+++
T Consensus 124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~-tg~~~~~i~~-~--~~V~SlswspdG~lLat-~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE-NEKRAFQINM-P--KKLSSLKWNIKGNLLSG-TCVGKHMHIIDPRK 198 (568)
T ss_pred CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC-CCcEEEEEec-C--CcEEEEEECCCCCEEEE-EecCCEEEEEECCC
Confidence 7889999999998753 333 8999999997 5665555542 2 45889999999999987 88999999999998
Q ss_pred CCCCCcccccccCCeEEE-----EEccCCCEEEEEecCC----cEEEEEECCC-cceeeEEecc--eee--eeecCCCCe
Q psy3710 174 PERPPLDIAAHEAPLSCI-----ALNQTGTRLATASYKG----TLIRVFDTGS-GQKLNELRRG--LCV--LCPNSNNSL 239 (424)
Q Consensus 174 ~~~~~~~~~~~~~~v~~~-----~~~~~~~~l~~~~~d~----~~i~iwd~~~-~~~~~~~~~~--~~~--~~~~~~~~~ 239 (424)
+ ..+..+.+|.+.+... .|++++.+|++++.++ . |++||+++ .+++..+..+ ... ..+.++.+.
T Consensus 199 g-~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~-VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~ 276 (568)
T PTZ00420 199 Q-EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMRE-MKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL 276 (568)
T ss_pred C-cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccE-EEEEECCCCCCceEEEEecCCccceEEeeeCCCCC
Confidence 6 6677888998765433 3458889999988774 6 99999995 5556554432 222 344566677
Q ss_pred EEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCC
Q psy3710 240 LAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTG 281 (424)
Q Consensus 240 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 281 (424)
++++|..|+.|++|++..+.........+..++.+++|.|..
T Consensus 277 l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 277 IYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 777899999999999987542111112356788999999963
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=182.17 Aligned_cols=313 Identities=13% Similarity=0.201 Sum_probs=227.7
Q ss_pred cccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---ecc
Q psy3710 44 KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGL 119 (424)
Q Consensus 44 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~ 119 (424)
...+..|...|..++.......+.+++ .|.+-+||.+++|+++.++. |.+.|++++|++.+.++.+ |++
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtAS-------ADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t 213 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTAS-------ADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDET 213 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecc-------cccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcc
Confidence 334566888898888877777777777 68999999999999999999 8999999999999988876 889
Q ss_pred EEEEeecCCCceeEE--EeeCCCCCeeEEEeecCCCCeEEEeeccC-CeEEEEeCCCCCCCCcccccccCCeEEEEEccC
Q psy3710 120 IKVYTFIQCPQQLHV--FETNPNPKGLCVLCPNSNNSLLAFPGRKS-GHVHLVDLADPERPPLDIAAHEAPLSCIALNQT 196 (424)
Q Consensus 120 i~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 196 (424)
-+||...-+.+.... -..|......-+ -..+.+..-.+-..| .+|+ .++..+.+|.+.|.+..|-..
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~--sDe~~~d~d~~~~sD~~tiR--------vPl~~ltgH~~vV~a~dWL~g 283 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEH--SDEHNRDTDSSEKSDGHTIR--------VPLMRLTGHRAVVSACDWLAG 283 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhc--ccccccccccccccCCceee--------eeeeeeeccccceEehhhhcC
Confidence 999985311111000 001110000000 001111111000111 1222 466788899999999999999
Q ss_pred CCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeE
Q psy3710 197 GTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLS 273 (424)
Q Consensus 197 ~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 273 (424)
|+.+++++.|.+ ..+||+++++.+..+.++ ...++.+| .+.++++.+.|.+.++||.+..-..+..+++|...|+
T Consensus 284 g~Q~vTaSWDRT-AnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVT 361 (481)
T KOG0300|consen 284 GQQMVTASWDRT-ANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVT 361 (481)
T ss_pred cceeeeeecccc-ceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeeccccccee
Confidence 999999999999 999999999999999877 33344444 5567777999999999999976666778999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEECCCCc-eeeeec-----------cCCcEEEEEeCCCcEEEEEccccccccccccc
Q psy3710 274 CIALNQTGTRLATASYKGTLIRVFDTGSGQ-KLNELR-----------RDSSYLCVSSDHGTVHVFSVDEAQKINKQSSL 341 (424)
Q Consensus 274 ~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~-~~~~~~-----------~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~ 341 (424)
++.|..+ ..+++|+.|.+ |++||+++.+ ++.++. ..+..++.--++..|++||++. ..+.+++.
T Consensus 362 S~vF~~d-d~vVSgSDDrT-vKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG-~RlaRlPr- 437 (481)
T KOG0300|consen 362 SVVFNTD-DRVVSGSDDRT-VKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG-NRLARLPR- 437 (481)
T ss_pred EEEEecC-CceeecCCCce-EEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCC-CccccCCc-
Confidence 9999876 57899999999 9999998743 444443 2345677777788999999987 44433321
Q ss_pred eeeeccCccccCCceeeEEeecCCCceEEEEecCC--CeEEEEeccCcEEEEEecC
Q psy3710 342 ASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADS--NSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~l~~~~~dg~v~~~~~~~ 395 (424)
..-+.|...+++++|..+- ..|++++.|..+.-|+++.
T Consensus 438 ----------------tsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 438 ----------------TSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred ----------------ccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 1134566788999998643 4689999999999999873
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-26 Score=187.56 Aligned_cols=268 Identities=17% Similarity=0.204 Sum_probs=213.3
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCccc----cc-------------c-cccCCCeeeEEEeccCce
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEK----ER-------------Q-DFTDGGLGHVEMLFRCNY 65 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~----~~-------------~-~~~~~~i~~~~~~~~~~~ 65 (424)
....|.-+|.|++++||+++..+++.++ |.-|++.+++.. .. . ..|...+.+++.++++++
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgky 216 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKY 216 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcE
Confidence 3567999999999999999999999999 999998776632 11 1 146678899999999999
Q ss_pred EEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecC--CceEEEe-eccEEEEeecCCCceeEEEeeCCCC
Q psy3710 66 LALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRR--DKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNP 141 (424)
Q Consensus 66 l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~ 141 (424)
+++.+ .|..|.||+..+.+.++.+. |.+.|.+++|-. +..+.++ |..+++|++. ....+.++-+|+..
T Consensus 217 latgg-------~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~-~~s~vetlyGHqd~ 288 (479)
T KOG0299|consen 217 LATGG-------RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSID-QLSYVETLYGHQDG 288 (479)
T ss_pred EEecC-------CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehh-HhHHHHHHhCCccc
Confidence 99988 57999999999999999988 899999999964 4455555 9999999996 66777777777744
Q ss_pred CeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCccee
Q psy3710 142 KGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL 221 (424)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~ 221 (424)
+..+....-.+.+.+ |+.|+++++|++.. .....+.+|.+.+.+++|-.+ ..+++|+.+|. |.+|++.+.+++
T Consensus 289 --v~~IdaL~reR~vtV-GgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~~KKkpl 361 (479)
T KOG0299|consen 289 --VLGIDALSRERCVTV-GGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSLLKKKPL 361 (479)
T ss_pred --eeeechhcccceEEe-ccccceeEEEeccc--cceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeeecccCce
Confidence 666666555555555 99999999999965 566678899999999999865 68999999999 999999999888
Q ss_pred eEEecc---------------eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec--cCCCCeEEEEEcCCCCEE
Q psy3710 222 NELRRG---------------LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA--AHEAPLSCIALNQTGTRL 284 (424)
Q Consensus 222 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l 284 (424)
...+.. +..++..| +..++++|+.+|.|++|-+..+-..+..+. .-.+-|++++|+++|+.+
T Consensus 362 f~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~i 440 (479)
T KOG0299|consen 362 FTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRI 440 (479)
T ss_pred eEeeccccccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEE
Confidence 776522 22334444 456777799999999999998854333222 356789999999999966
Q ss_pred EEEe
Q psy3710 285 ATAS 288 (424)
Q Consensus 285 ~~~~ 288 (424)
++|.
T Consensus 441 vagi 444 (479)
T KOG0299|consen 441 VAGI 444 (479)
T ss_pred EEec
Confidence 6654
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=175.92 Aligned_cols=281 Identities=12% Similarity=0.166 Sum_probs=212.7
Q ss_pred ccccCCceEEEEECCC-CCeeEeecCCe-EEEEeCCcCcc---------------cccccccCCCeeeEEEeccCceEEE
Q psy3710 6 SSTYKNGLLYAGFNQD-QGCFACGMEDG-FRIYNCDPLKE---------------KERQDFTDGGLGHVEMLFRCNYLAL 68 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~-g~~la~g~~~~-i~iw~~~~~~~---------------~~~~~~~~~~i~~~~~~~~~~~l~~ 68 (424)
...|.+.|+++...+. |+++++|+.+| |.+||++.... ......|.-.|..+.|-|-...+++
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 4579999999999875 79999999999 99999875441 1112236678999999998888877
Q ss_pred EeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCc---eEEEe---eccEEEEeecCCCceeEEEeeCCCCC
Q psy3710 69 VGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDK---IVVVL---EGLIKVYTFIQCPQQLHVFETNPNPK 142 (424)
Q Consensus 69 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~ 142 (424)
.+. .|+++++||..+-+....++.++.|++-+++|-. .++|. +-.|++-|+. .+...+.+.+|..
T Consensus 119 ssS------FDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~-SGs~sH~LsGHr~-- 189 (397)
T KOG4283|consen 119 SSS------FDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA-SGSFSHTLSGHRD-- 189 (397)
T ss_pred ccc------ccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEecc-CCcceeeeccccC--
Confidence 664 6999999999999999999999999999998753 45554 7799999997 8999999999985
Q ss_pred eeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCC--------------CcccccccCCeEEEEEccCCCEEEEEecCCc
Q psy3710 143 GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERP--------------PLDIAAHEAPLSCIALNQTGTRLATASYKGT 208 (424)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 208 (424)
++.++.|+|...+++++|+.||.|++||++..... ++.-.+|.+.|..++|..++.++++++.|..
T Consensus 190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r 269 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR 269 (397)
T ss_pred ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc
Confidence 49999999999999888999999999999854111 1123478899999999999999999999999
Q ss_pred EEEEEECCCcceeeEEec--------ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCC
Q psy3710 209 LIRVFDTGSGQKLNELRR--------GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT 280 (424)
Q Consensus 209 ~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 280 (424)
+++|+..+|+....-.+ +.....-+.+...++. --.++.+.++++-++.. ++.+..|...|.+.++-|+
T Consensus 270 -~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~-~p~~~~lall~~~sgs~-ir~l~~h~k~i~c~~~~~~ 346 (397)
T KOG4283|consen 270 -IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVL-FPNDGSLALLNLLEGSF-VRRLSTHLKRINCAAYRPD 346 (397)
T ss_pred -eEEeecccCcccccccccccccccccceEEEeecccceEEE-EecCCeEEEEEccCceE-EEeeecccceeeEEeecCc
Confidence 99999998854322111 1111100111111111 23447777777776653 4556677777888888888
Q ss_pred CCEEEEEeCCCcEEEEEEC
Q psy3710 281 GTRLATASYKGTLIRVFDT 299 (424)
Q Consensus 281 ~~~l~~~~~d~~~i~iwd~ 299 (424)
-+...+++.|+. |..|-+
T Consensus 347 fq~~~tg~~d~n-i~~w~p 364 (397)
T KOG4283|consen 347 FEQCFTGDMNGN-IYMWSP 364 (397)
T ss_pred hhhhhccccCCc-cccccc
Confidence 777888888888 777765
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-24 Score=188.25 Aligned_cols=269 Identities=10% Similarity=0.094 Sum_probs=198.6
Q ss_pred CeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCC
Q psy3710 23 GCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAP 101 (424)
Q Consensus 23 ~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 101 (424)
..+++++.++ +++||..+++.......+ ..+..+.|+|+++.+++++. .++.|++||..+++.+..+.....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~------~~~~v~~~d~~~~~~~~~~~~~~~ 74 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGKLLYVCAS------DSDTIQVIDLATGEVIGTLPSGPD 74 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECC-CCCCceEECCCCCEEEEEEC------CCCeEEEEECCCCcEEEeccCCCC
Confidence 4677877777 999999888775555443 34567999999988765553 378999999999988877765455
Q ss_pred eEEEEecCCceEEE-e---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccC-CeEEEEeCCCCCC
Q psy3710 102 VKGVRLRRDKIVVV-L---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKS-GHVHLVDLADPER 176 (424)
Q Consensus 102 v~~~~~~~~~~~~~-~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d-g~i~i~d~~~~~~ 176 (424)
+..++++|++..++ + ++.+++||+. ..+.+..+.... ....++++|+++++++ +..+ ..+.+||..+. .
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~-~~~~~~~~~~~~---~~~~~~~~~dg~~l~~-~~~~~~~~~~~d~~~~-~ 148 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIE-TRKVLAEIPVGV---EPEGMAVSPDGKIVVN-TSETTNMAHFIDTKTY-E 148 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECC-CCeEEeEeeCCC---CcceEEECCCCCEEEE-EecCCCeEEEEeCCCC-e
Confidence 67889999986553 2 6899999996 555565554322 2456889999999998 5555 45777898765 3
Q ss_pred CCcccccccCCeEEEEEccCCCEEEEE-ecCCcEEEEEECCCcceeeEEecc----------eeeeeecCCCCeEEEEee
Q psy3710 177 PPLDIAAHEAPLSCIALNQTGTRLATA-SYKGTLIRVFDTGSGQKLNELRRG----------LCVLCPNSNNSLLAFPGR 245 (424)
Q Consensus 177 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 245 (424)
...... .......++|+|++++++.+ ..++. |++||+++++.+..+... ...++++|++..++++..
T Consensus 149 ~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~ 226 (300)
T TIGR03866 149 IVDNVL-VDQRPRFAEFTADGKELWVSSEIGGT-VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG 226 (300)
T ss_pred EEEEEE-cCCCccEEEECCCCCEEEEEcCCCCE-EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC
Confidence 322222 23445789999999988655 45888 999999998877665421 234678999998877667
Q ss_pred cCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEECCCCceeeeec
Q psy3710 246 KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS-YKGTLIRVFDTGSGQKLNELR 309 (424)
Q Consensus 246 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~~i~iwd~~~~~~~~~~~ 309 (424)
.++.+.+||+++.+.. ..+ .+...+.+++|+|+|++|++++ .++. |++||+++++++.++.
T Consensus 227 ~~~~i~v~d~~~~~~~-~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~-i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 227 PANRVAVVDAKTYEVL-DYL-LVGQRVWQLAFTPDEKYLLTTNGVSND-VSVIDVAALKVIKSIK 288 (300)
T ss_pred CCCeEEEEECCCCcEE-EEE-EeCCCcceEEECCCCCEEEEEcCCCCe-EEEEECCCCcEEEEEE
Confidence 7788999999876532 222 3455789999999999998864 5788 9999999998887764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-26 Score=188.11 Aligned_cols=293 Identities=17% Similarity=0.167 Sum_probs=219.4
Q ss_pred ccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEeeccEEEEe
Q psy3710 45 ERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYT 124 (424)
Q Consensus 45 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~ 124 (424)
.....|.-++.++.++++.++.+.++ .+++|.-|+..+|+....+-....|...
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsas-------k~g~i~kw~v~tgk~~~~i~~~~ev~k~------------------- 189 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSAS-------KDGTILKWDVLTGKKDRYIIERDEVLKS------------------- 189 (479)
T ss_pred eeeccccCcceEEEeeccccceeecC-------CCcceeeeehhcCcccccccccchhhhh-------------------
Confidence 33455788999999999999999999 6899999999988865433221111100
Q ss_pred ecCCCceeEEE-eeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEE
Q psy3710 125 FIQCPQQLHVF-ETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATA 203 (424)
Q Consensus 125 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 203 (424)
.+.+...- +.|. ..+.+++.++|+++|++ |+.|..|.||+.++. +.++.+.+|.+.|.+++|-.....++++
T Consensus 190 ---~~~~~k~~r~~h~--keil~~avS~Dgkylat-gg~d~~v~Iw~~~t~-ehv~~~~ghr~~V~~L~fr~gt~~lys~ 262 (479)
T KOG0299|consen 190 ---HGNPLKESRKGHV--KEILTLAVSSDGKYLAT-GGRDRHVQIWDCDTL-EHVKVFKGHRGAVSSLAFRKGTSELYSA 262 (479)
T ss_pred ---ccCCCCccccccc--ceeEEEEEcCCCcEEEe-cCCCceEEEecCccc-chhhcccccccceeeeeeecCccceeee
Confidence 11111111 2333 55889999999999999 999999999999997 7888899999999999999888899999
Q ss_pred ecCCcEEEEEECCCcceeeEEecce-eeeeecCC-CCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCC
Q psy3710 204 SYKGTLIRVFDTGSGQKLNELRRGL-CVLCPNSN-NSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTG 281 (424)
Q Consensus 204 ~~d~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 281 (424)
+.|.+ |++|++.....+.++-+|. ....++.- -...+..|+.|+++++|++.... ...+.+|.+.+-|++|-.+
T Consensus 263 s~Drs-vkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees--qlifrg~~~sidcv~~In~- 338 (479)
T KOG0299|consen 263 SADRS-VKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGSIDCVAFIND- 338 (479)
T ss_pred ecCCc-eEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc--eeeeeCCCCCeeeEEEecc-
Confidence 99999 9999999888777776662 22233322 23344458899999999995433 4556689999999999765
Q ss_pred CEEEEEeCCCcEEEEEECCCCceeeeec------------------------cCCcEEEEEeCCCcEEEEEcccccc-cc
Q psy3710 282 TRLATASYKGTLIRVFDTGSGQKLNELR------------------------RDSSYLCVSSDHGTVHVFSVDEAQK-IN 336 (424)
Q Consensus 282 ~~l~~~~~d~~~i~iwd~~~~~~~~~~~------------------------~~~~~l~~~~~d~~i~iw~~~~~~~-~~ 336 (424)
..+++|+.+|. |.+|++.+.+++.+.. |...++|+|+.+|.|++|.+.++-. ++
T Consensus 339 ~HfvsGSdnG~-IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~ 417 (479)
T KOG0299|consen 339 EHFVSGSDNGS-IALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAIN 417 (479)
T ss_pred cceeeccCCce-EEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccc
Confidence 68999999999 9999999888776532 4567899999999999999998632 21
Q ss_pred ccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEE-eccCcEEEEEecC
Q psy3710 337 KQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVI-CADGSYYKFMFNS 395 (424)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~v~~~~~~~ 395 (424)
.+.. .. -.+-|+.++|+++|++|++| +....+--|-...
T Consensus 418 ~l~~---ls-----------------~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k 457 (479)
T KOG0299|consen 418 LLYS---LS-----------------LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLK 457 (479)
T ss_pred eeee---cc-----------------cccEEEEEEEccCCCEEEEecccccccceeeEee
Confidence 1111 11 13557899999999977665 4455666666553
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-25 Score=174.40 Aligned_cols=259 Identities=15% Similarity=0.187 Sum_probs=204.1
Q ss_pred eEeecCCe-EEEEeCCcCc------------ccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCc
Q psy3710 25 FACGMEDG-FRIYNCDPLK------------EKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ 91 (424)
Q Consensus 25 la~g~~~~-i~iw~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~ 91 (424)
|++|+-.. |.=+++.+.. .......|.+++++++. ++.++++.+ .|.+|+|||+.+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGs-------sDetI~IYDm~k~~ 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGS-------SDETIHIYDMRKRK 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccC-------CCCcEEEEeccchh
Confidence 45555555 5555554332 12334458888877776 466666665 68999999999988
Q ss_pred EEEEEe-ecCCeEEEEecCCc---eEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCe
Q psy3710 92 VVICLE-FNAPVKGVRLRRDK---IVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGH 165 (424)
Q Consensus 92 ~~~~~~-~~~~v~~~~~~~~~---~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~ 165 (424)
.+..+- |.+.|+++.|.+.. .++.. ||.|.+|+.. ....+..++.|.+. +..++.+|.+++-++ -+.|+.
T Consensus 75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-~W~~~~slK~H~~~--Vt~lsiHPS~KLALs-Vg~D~~ 150 (362)
T KOG0294|consen 75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-SWELLKSLKAHKGQ--VTDLSIHPSGKLALS-VGGDQV 150 (362)
T ss_pred hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC-CeEEeeeecccccc--cceeEecCCCceEEE-EcCCce
Confidence 888776 89999999998776 34443 9999999996 78899999999866 888999999987776 889999
Q ss_pred EEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEee
Q psy3710 166 VHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGR 245 (424)
Q Consensus 166 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (424)
+++|++-.++.. ..+. -...-+.+.|+|.|.+++.++.++ |-+|.+.+.+....+..+...++..+..+..+++|.
T Consensus 151 lr~WNLV~Gr~a-~v~~-L~~~at~v~w~~~Gd~F~v~~~~~--i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~ 226 (362)
T KOG0294|consen 151 LRTWNLVRGRVA-FVLN-LKNKATLVSWSPQGDHFVVSGRNK--IDIYQLDNASVFREIENPKRILCATFLDGSELLVGG 226 (362)
T ss_pred eeeehhhcCccc-eeec-cCCcceeeEEcCCCCEEEEEeccE--EEEEecccHhHhhhhhccccceeeeecCCceEEEec
Confidence 999999887322 2221 122234599999999999999887 899999998888888777777777777666667799
Q ss_pred cCCeEEEEeCCCCCCCCeeeccCCCCeEEEEE--cCCCCEEEEEeCCCcEEEEEECCCC
Q psy3710 246 KSGHVHLVDLADPERPPLDIAAHEAPLSCIAL--NQTGTRLATASYKGTLIRVFDTGSG 302 (424)
Q Consensus 246 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~~i~iwd~~~~ 302 (424)
+++.|.+||.... .+...+.+|...|.++.+ .|++.+|+++|.||. |++||++..
T Consensus 227 d~~~i~~~D~ds~-~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~-I~vWd~~~~ 283 (362)
T KOG0294|consen 227 DNEWISLKDTDSD-TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGF-IKVWDIDME 283 (362)
T ss_pred CCceEEEeccCCC-ccceeeecchhheeeeEEEecCCceEEEEeccCce-EEEEEcccc
Confidence 9999999999984 466778899999999985 467889999999999 999999876
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-23 Score=182.04 Aligned_cols=352 Identities=14% Similarity=0.182 Sum_probs=246.7
Q ss_pred cCCceEEEEECCCCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECC
Q psy3710 9 YKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL 88 (424)
Q Consensus 9 h~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~ 88 (424)
-+..|-+++|++.++++.+|..+.|.-||+.+++.+.......+.|.+++..|.++.++..+ .||.+..++..
T Consensus 68 ~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igc-------ddGvl~~~s~~ 140 (691)
T KOG2048|consen 68 EDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGC-------DDGVLYDFSIG 140 (691)
T ss_pred CCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeec-------CCceEEEEecC
Confidence 35689999999777666666665599999999999888888899999999999998887776 57988888888
Q ss_pred CCcEEEEEe---ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEe-----eCC-CCCeeEEEeecCCCCeE
Q psy3710 89 KKQVVICLE---FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFE-----TNP-NPKGLCVLCPNSNNSLL 156 (424)
Q Consensus 89 ~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~l 156 (424)
.++...... .++.+.++.|+|++..++. ||.|++||.. .+..++... ... .+.-+.++.+-.++ .|
T Consensus 141 p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~-~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI 218 (691)
T KOG2048|consen 141 PDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK-SGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TI 218 (691)
T ss_pred CceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC-CCceEEEeeecccccccCCceEEEEEEEeecC-cE
Confidence 777766554 3589999999999985554 9999999997 555554221 112 23345566665554 46
Q ss_pred EEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCccee--e----EEec-cee
Q psy3710 157 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL--N----ELRR-GLC 229 (424)
Q Consensus 157 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~--~----~~~~-~~~ 229 (424)
++ |...|+|.+||...+ ..+..+..|.+.|.+++..+++.++.+++.|+. |.-+...+++.. . .+.. .+.
T Consensus 219 ~s-gDS~G~V~FWd~~~g-TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~-ii~~~~~~~~~~wv~~~~r~~h~hdvr 295 (691)
T KOG2048|consen 219 AS-GDSAGTVTFWDSIFG-TLIQSHSCHDADVLALAVADNEDRVFSAGVDPK-IIQYSLTTNKSEWVINSRRDLHAHDVR 295 (691)
T ss_pred EE-ecCCceEEEEcccCc-chhhhhhhhhcceeEEEEcCCCCeEEEccCCCc-eEEEEecCCccceeeeccccCCcccce
Confidence 65 999999999999987 788899999999999999999999999999999 777776655321 1 1111 134
Q ss_pred eeeecCCCCeEEEEeecCCeEEEE------------------------------------------eCCCC----C----
Q psy3710 230 VLCPNSNNSLLAFPGRKSGHVHLV------------------------------------------DLADP----E---- 259 (424)
Q Consensus 230 ~~~~~~~~~~~~~~~~~dg~i~i~------------------------------------------d~~~~----~---- 259 (424)
.++..+. .+++|+.|..+.+- .+.+. +
T Consensus 296 s~av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~ 372 (691)
T KOG2048|consen 296 SMAVIEN---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYI 372 (691)
T ss_pred eeeeecc---eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChh
Confidence 4444333 33344444444333 22222 0
Q ss_pred CCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceee-----------------eeccCCcEEEEEe-CC
Q psy3710 260 RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN-----------------ELRRDSSYLCVSS-DH 321 (424)
Q Consensus 260 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~-----------------~~~~~~~~l~~~~-~d 321 (424)
...+........|.+.+.||+|++++.+.-.. .++|.+.....+. .|+-++..++.++ .+
T Consensus 373 ~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~--~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~ 450 (691)
T KOG2048|consen 373 HLLKLFTKEKENISCAAISPDGNLIAISTVSR--TKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNI 450 (691)
T ss_pred hheeeecCCccceeeeccCCCCCEEEEeeccc--eEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEeccc
Confidence 01111112345688999999999999988665 6777776522222 2445666666666 66
Q ss_pred CcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecC
Q psy3710 322 GTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 322 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~ 395 (424)
..+.++++.+......... .| +...+.++.++.||+|+||++.+.+|.|++|++..
T Consensus 451 ~~le~~el~~ps~kel~~~------~~------------~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~ 506 (691)
T KOG2048|consen 451 FSLEEFELETPSFKELKSI------QS------------QAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLET 506 (691)
T ss_pred ceeEEEEecCcchhhhhcc------cc------------ccCCCcceeEEEcCCCCEEEEEeccceEEEEEccc
Confidence 7777777776433211111 00 12346789999999999999999999999999973
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=189.79 Aligned_cols=264 Identities=19% Similarity=0.244 Sum_probs=210.0
Q ss_pred EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEE-EEeecCCeEEEEecCCc
Q psy3710 33 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVI-CLEFNAPVKGVRLRRDK 111 (424)
Q Consensus 33 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~ 111 (424)
+.+||+.++.....+.........-.-.-.+.+++++... ...+.+|.+....... .+..+++|.+++-+|+|
T Consensus 20 ~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~------rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G 93 (476)
T KOG0646|consen 20 CIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLK------RPLLHVWEILKKDQVVQYIVLPGPVHALASSNLG 93 (476)
T ss_pred eeEEecCCCceeEEecCcccccchhhhhhchhheeeeccc------CccccccccCchhhhhhhcccccceeeeecCCCc
Confidence 8999999988754443310111111111234677766654 4689999987665555 33479999999999999
Q ss_pred eEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCC--------CCCCCcc
Q psy3710 112 IVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLAD--------PERPPLD 180 (424)
Q Consensus 112 ~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~--------~~~~~~~ 180 (424)
.+++. .+.|++|.+. ++..+..+..|-.+ ++++.|+.|+.++++ |+.||.|.+|++-. ..++...
T Consensus 94 ~~l~ag~i~g~lYlWels-sG~LL~v~~aHYQ~--ITcL~fs~dgs~iiT-gskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 94 YFLLAGTISGNLYLWELS-SGILLNVLSAHYQS--ITCLKFSDDGSHIIT-GSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred eEEEeecccCcEEEEEec-cccHHHHHHhhccc--eeEEEEeCCCcEEEe-cCCCccEEEEEEEeecccccCCCccceee
Confidence 88876 7999999997 89999988888755 889999999999998 99999999998642 1256778
Q ss_pred cccccCCeEEEEEccCC--CEEEEEecCCcEEEEEECCCcceeeEEecc--eeeeeecCCCCeEEEEeecCCeEEEEeCC
Q psy3710 181 IAAHEAPLSCIALNQTG--TRLATASYKGTLIRVFDTGSGQKLNELRRG--LCVLCPNSNNSLLAFPGRKSGHVHLVDLA 256 (424)
Q Consensus 181 ~~~~~~~v~~~~~~~~~--~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~dg~i~i~d~~ 256 (424)
+..|.-+|+++...+.| .+++++|.|.+ +++||+..+..+.++..+ +.+++++|.+..+++ |+.+|.|.+.++.
T Consensus 170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t-~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yi-Gt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGSGGTNARLYTASEDRT-IKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYI-GTEEGKIFQNLLF 247 (476)
T ss_pred eccCcceeEEEEecCCCccceEEEecCCce-EEEEEeccceeeEEEecCCcceeEEEcccccEEEe-cCCcceEEeeehh
Confidence 88999999999987753 68999999999 999999999988776544 778888998887776 9999999998886
Q ss_pred CCC---------------CCCeeeccCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec
Q psy3710 257 DPE---------------RPPLDIAAHEA--PLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR 309 (424)
Q Consensus 257 ~~~---------------~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 309 (424)
.-. .....+.+|.+ +|+|++++-||..|++|+.||. ++|||+.+.++++++.
T Consensus 248 ~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~-VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 248 KLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK-VCVWDIYSKQCIRTLQ 316 (476)
T ss_pred cCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCC-EEEEecchHHHHHHHh
Confidence 432 12234568888 9999999999999999999999 9999999999988766
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-25 Score=175.00 Aligned_cols=231 Identities=14% Similarity=0.213 Sum_probs=184.2
Q ss_pred eEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCC--EEEEEecCCcE
Q psy3710 132 LHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT--RLATASYKGTL 209 (424)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~~ 209 (424)
+..+..|. ..+.+++. ++.++++ |+.|.+|+|||++.. .....+..|.+.|+++.|.+.-. .|++|+.||.
T Consensus 36 lF~~~aH~--~sitavAV--s~~~~aS-GssDetI~IYDm~k~-~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~- 108 (362)
T KOG0294|consen 36 LFAFSAHA--GSITALAV--SGPYVAS-GSSDETIHIYDMRKR-KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH- 108 (362)
T ss_pred cccccccc--cceeEEEe--cceeEec-cCCCCcEEEEeccch-hhhcceeccccceEEEEecCCcchhheeeecCCCc-
Confidence 34445555 44777776 4889998 999999999999986 67778889999999999998765 8999999999
Q ss_pred EEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEE
Q psy3710 210 IRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLAT 286 (424)
Q Consensus 210 i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 286 (424)
|.+|+....+.+..++.+ ++.++++|.+.. +++-+.|+.+++||+-+++..... .-....+.+.|+|.|.+++.
T Consensus 109 i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KL-ALsVg~D~~lr~WNLV~Gr~a~v~--~L~~~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKL-ALSVGGDQVLRTWNLVRGRVAFVL--NLKNKATLVSWSPQGDHFVV 185 (362)
T ss_pred EEEEEcCCeEEeeeecccccccceeEecCCCce-EEEEcCCceeeeehhhcCccceee--ccCCcceeeEEcCCCCEEEE
Confidence 999999999999998866 777889998775 445889999999999988743322 22223344999999999999
Q ss_pred EeCCCcEEEEEECCCCceeeeec----------cCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCce
Q psy3710 287 ASYKGTLIRVFDTGSGQKLNELR----------RDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWS 356 (424)
Q Consensus 287 ~~~d~~~i~iwd~~~~~~~~~~~----------~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (424)
+..++ |-+|.+.+.....++. -++..|++|++|+.|.+||.++..++.
T Consensus 186 ~~~~~--i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~-------------------- 243 (362)
T KOG0294|consen 186 SGRNK--IDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLT-------------------- 243 (362)
T ss_pred EeccE--EEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccce--------------------
Confidence 99988 8999998765544332 378899999999999999999855432
Q ss_pred eeEEeecCCCceEEEE--ecCCCeEEEEeccCcEEEEEecCC
Q psy3710 357 FCKFQIPSDPPCICAF--GADSNSIIVICADGSYYKFMFNSK 396 (424)
Q Consensus 357 ~~~~~~~~~~~~~~~~--s~~~~~l~~~~~dg~v~~~~~~~~ 396 (424)
.+..|...|-.+.+ .|++.||+++++||.|++||++..
T Consensus 244 --~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 244 --EFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred --eeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 35556666777763 467899999999999999999843
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=187.27 Aligned_cols=259 Identities=14% Similarity=0.162 Sum_probs=192.4
Q ss_pred EEEeecCCeEEEEecCCc-eEEEe---eccEEEEeecCCCc---------eeEEEeeCCCCCeeEEEeecCCCCeEEEee
Q psy3710 94 ICLEFNAPVKGVRLRRDK-IVVVL---EGLIKVYTFIQCPQ---------QLHVFETNPNPKGLCVLCPNSNNSLLAFPG 160 (424)
Q Consensus 94 ~~~~~~~~v~~~~~~~~~-~~~~~---~~~i~v~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (424)
..+.|.+.|+.+++-|.. .++++ .+.+.|||...... +-..+.+|... -..++|++.....+.+|
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e--g~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE--GYGLSWNRQQEGTLLSG 196 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc--ccccccccccceeEeec
Confidence 345589999999999887 45554 78999999853221 12256777653 44578887665555559
Q ss_pred ccCCeEEEEeCCCCCC------CCcccccccCCeEEEEEcc-CCCEEEEEecCCcEEEEEECCC--cceeeEEec---ce
Q psy3710 161 RKSGHVHLVDLADPER------PPLDIAAHEAPLSCIALNQ-TGTRLATASYKGTLIRVFDTGS--GQKLNELRR---GL 228 (424)
Q Consensus 161 ~~dg~i~i~d~~~~~~------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~~i~iwd~~~--~~~~~~~~~---~~ 228 (424)
+.|+.|++||+..... +...+.+|...|..++|++ +...+++++.|+. +.|||+++ .++....+. ++
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~-L~iwD~R~~~~~~~~~~~ah~~~v 275 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK-LMIWDTRSNTSKPSHSVKAHSAEV 275 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe-EEEEEcCCCCCCCcccccccCCce
Confidence 9999999999986533 3446789999999999999 4568889999999 99999994 444444443 48
Q ss_pred eeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEECCCCceeee
Q psy3710 229 CVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT-GTRLATASYKGTLIRVFDTGSGQKLNE 307 (424)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd~~~~~~~~~ 307 (424)
.+++|+|.+..++++|+.|++|.+||+++...+...+.+|+..|..+.|+|+ ...||+++.|+. +.+||+..-...+.
T Consensus 276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRIGEEQS 354 (422)
T ss_pred eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEeccccccccC
Confidence 8999999999999999999999999999999999999999999999999995 457777777777 77777653111100
Q ss_pred eccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCe-EEEEeccC
Q psy3710 308 LRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNS-IIVICADG 386 (424)
Q Consensus 308 ~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~dg 386 (424)
++-.... ..-.+..-.+|...|..+.|+|+..+ +++++.|+
T Consensus 355 -------------------~eda~dg-------------------ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN 396 (422)
T KOG0264|consen 355 -------------------PEDAEDG-------------------PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN 396 (422)
T ss_pred -------------------hhhhccC-------------------CcceeEEecCcccccccccCCCCCCeEEEEecCCc
Confidence 0000000 00112223456677889999997765 67889999
Q ss_pred cEEEEEec
Q psy3710 387 SYYKFMFN 394 (424)
Q Consensus 387 ~v~~~~~~ 394 (424)
.+.||++.
T Consensus 397 ~LqIW~~s 404 (422)
T KOG0264|consen 397 ILQIWQMA 404 (422)
T ss_pred eEEEeecc
Confidence 99999986
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-24 Score=171.31 Aligned_cols=264 Identities=16% Similarity=0.191 Sum_probs=201.0
Q ss_pred ccCCceEEEEECCC-CCeeEeecCCe-EEEEeCCcC-ccc-ccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEE
Q psy3710 8 TYKNGLLYAGFNQD-QGCFACGMEDG-FRIYNCDPL-KEK-ERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVM 83 (424)
Q Consensus 8 ~h~~~V~~~~~s~~-g~~la~g~~~~-i~iw~~~~~-~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~ 83 (424)
.-++.|.+++|||. ..++++|+-|+ ||+|+++.. ... .....|.+++.+++|+.++..+++.+ .|+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~-------~Dk~~k 97 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGG-------CDKQAK 97 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeec-------cCCceE
Confidence 35688999999994 56666889888 999999773 332 22344799999999999998887777 589999
Q ss_pred EEECCCCcEEEEEeecCCeEEEEecCCce--EEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEE
Q psy3710 84 IWDDLKKQVVICLEFNAPVKGVRLRRDKI--VVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAF 158 (424)
Q Consensus 84 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (424)
+||+.+++....-.|.++|..+.|-+... ++++ |.+|+.||.+ ...++.++.... .+.++.. ...++++
T Consensus 98 ~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R-~~~pv~t~~LPe---RvYa~Dv--~~pm~vV 171 (347)
T KOG0647|consen 98 LWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR-SSNPVATLQLPE---RVYAADV--LYPMAVV 171 (347)
T ss_pred EEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccC-CCCeeeeeeccc---eeeehhc--cCceeEE
Confidence 99999997777667999999999987664 5554 9999999998 677777776543 3444332 3556666
Q ss_pred eeccCCeEEEEeCCCCCCCCcccc-cccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCc--ceeeEEecc--------
Q psy3710 159 PGRKSGHVHLVDLADPERPPLDIA-AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG--QKLNELRRG-------- 227 (424)
Q Consensus 159 ~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~--~~~~~~~~~-------- 227 (424)
+..+..|.+|+++++....+... .-+-.+++++..++....+.|+-.|. +.+..+..+ +.-..|+.|
T Consensus 172 -ata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~~~~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 172 -ATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDPNPKDNFTFKCHRSTNSVND 249 (347)
T ss_pred -EecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCCCccCceeEEEeccCCCCCC
Confidence 99999999999986532222221 22446889999999888899999999 999988876 222333322
Q ss_pred ----eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEe
Q psy3710 228 ----LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS 288 (424)
Q Consensus 228 ----~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 288 (424)
+..++|+|..+.++. .+.||++.+||-....+ +...+.|..+|++..|+.+|.++|.+.
T Consensus 250 ~VYaVNsi~FhP~hgtlvT-aGsDGtf~FWDkdar~k-Lk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVT-AGSDGTFSFWDKDARTK-LKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceEEecceEeecccceEEE-ecCCceEEEecchhhhh-hhccCcCCCccceeEecCCCCEEEEEe
Confidence 456899997776665 88899999999876553 455568999999999999999887653
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-26 Score=191.75 Aligned_cols=264 Identities=17% Similarity=0.282 Sum_probs=215.8
Q ss_pred cCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCC---cEEEEEe---ecCCeEEEEecCCceEEEe---eccE
Q psy3710 50 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKK---QVVICLE---FNAPVKGVRLRRDKIVVVL---EGLI 120 (424)
Q Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~---~~~~~~~---~~~~v~~~~~~~~~~~~~~---~~~i 120 (424)
|.+-|.++.++.....+.+.+ .+.|+|||+... ..+..+. -..-++++.+.||+..+.. ..++
T Consensus 418 HGEvVcAvtIS~~trhVyTgG--------kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastl 489 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGG--------KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTL 489 (705)
T ss_pred cCcEEEEEEecCCcceeEecC--------CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccccee
Confidence 677788888888888887777 689999998632 3344443 3567899999999977766 5689
Q ss_pred EEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEE
Q psy3710 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRL 200 (424)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 200 (424)
.|||+. ...+....+.......+.+++.+||.+..++ +..||.|.|||+.+. ..++.+++|.+.+.||.++++|..|
T Consensus 490 siWDLA-apTprikaeltssapaCyALa~spDakvcFs-ccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~dGtkl 566 (705)
T KOG0639|consen 490 SIWDLA-APTPRIKAELTSSAPACYALAISPDAKVCFS-CCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISKDGTKL 566 (705)
T ss_pred eeeecc-CCCcchhhhcCCcchhhhhhhcCCccceeee-eccCCcEEEEEcccc-eeeecccCCCCCceeEEecCCCcee
Confidence 999996 3322222222222344678899999998887 999999999999985 7889999999999999999999999
Q ss_pred EEEecCCcEEEEEECCCcceeeE--EecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEc
Q psy3710 201 ATASYKGTLIRVFDTGSGQKLNE--LRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALN 278 (424)
Q Consensus 201 ~~~~~d~~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 278 (424)
.+|+-|.+ |+.||++.++.+.+ |...+..+...|.+..+++ |-.++.+.+......+ ...+.-|++.|.++.|.
T Consensus 567 WTGGlDnt-vRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlav-GMens~vevlh~skp~--kyqlhlheScVLSlKFa 642 (705)
T KOG0639|consen 567 WTGGLDNT-VRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAV-GMENSNVEVLHTSKPE--KYQLHLHESCVLSLKFA 642 (705)
T ss_pred ecCCCccc-eeehhhhhhhhhhhhhhhhhheecccCCCccceee-ecccCcEEEEecCCcc--ceeecccccEEEEEEec
Confidence 99999999 99999999987754 4455777888999999988 9999999998877655 34556799999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEECCCCceeee-----------eccCCcEEEEEeCCCcEEEEEc
Q psy3710 279 QTGTRLATASYKGTLIRVFDTGSGQKLNE-----------LRRDSSYLCVSSDHGTVHVFSV 329 (424)
Q Consensus 279 ~~~~~l~~~~~d~~~i~iwd~~~~~~~~~-----------~~~~~~~l~~~~~d~~i~iw~~ 329 (424)
+-|+++++.+.|.- +..|...-|..+.+ ++.|.+++++|+.|..-.+|.+
T Consensus 643 ~cGkwfvStGkDnl-LnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 643 YCGKWFVSTGKDNL-LNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccCceeeecCchhh-hhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999999999 99999988876654 4578999999999999888875
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-26 Score=191.62 Aligned_cols=273 Identities=14% Similarity=0.159 Sum_probs=218.0
Q ss_pred EEEEEeecCCeEEEEecCCceEEEe--eccEEEEeecCCC--ceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEE
Q psy3710 92 VVICLEFNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCP--QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVH 167 (424)
Q Consensus 92 ~~~~~~~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~ 167 (424)
.+.++.|.+-|.++.++.....+.+ .|.|+|||+...+ .++..+........+.+....|||+.|++ |++-.++.
T Consensus 412 q~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLiv-GGeastls 490 (705)
T KOG0639|consen 412 QINTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIV-GGEASTLS 490 (705)
T ss_pred hhhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEe-ccccceee
Confidence 3456668888899999988888777 7899999996432 23334444333344667778999999999 99999999
Q ss_pred EEeCCCCCCCCc-ccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEE
Q psy3710 168 LVDLADPERPPL-DIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFP 243 (424)
Q Consensus 168 i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 243 (424)
|||+......++ .+....-....++.+||.+...++..||. |.|||+.+...+++|+++ ..++.++++|..+..
T Consensus 491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGn-I~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWT- 568 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGN-IAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWT- 568 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCc-EEEEEcccceeeecccCCCCCceeEEecCCCceeec-
Confidence 999987532222 33333456788999999999999999999 999999999999999876 678888999988876
Q ss_pred eecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCcee-----------eeeccCC
Q psy3710 244 GRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL-----------NELRRDS 312 (424)
Q Consensus 244 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~-----------~~~~~~~ 312 (424)
|+-|++|+.||++++.++... ...+.|.++..+|++.+|+.|-.++. +.|......+.. ..|.+-|
T Consensus 569 GGlDntvRcWDlregrqlqqh--dF~SQIfSLg~cP~~dWlavGMens~-vevlh~skp~kyqlhlheScVLSlKFa~cG 645 (705)
T KOG0639|consen 569 GGLDNTVRCWDLREGRQLQQH--DFSSQIFSLGYCPTGDWLAVGMENSN-VEVLHTSKPEKYQLHLHESCVLSLKFAYCG 645 (705)
T ss_pred CCCccceeehhhhhhhhhhhh--hhhhhheecccCCCccceeeecccCc-EEEEecCCccceeecccccEEEEEEecccC
Confidence 999999999999988754432 34678999999999999999999998 888877654322 1467899
Q ss_pred cEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEE
Q psy3710 313 SYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFM 392 (424)
Q Consensus 313 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~ 392 (424)
+++++.+.|+-+..|.+.-|..+-+.+ ...+|.+|.+|.|.+|+++|+.|....+|.
T Consensus 646 kwfvStGkDnlLnawrtPyGasiFqsk-----------------------E~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 646 KWFVSTGKDNLLNAWRTPYGASIFQSK-----------------------ESSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred ceeeecCchhhhhhccCccccceeecc-----------------------ccCcceeeeeccCceEEEecCCCcceEEEE
Confidence 999999999999999998876543322 135688999999999999999999888887
Q ss_pred e
Q psy3710 393 F 393 (424)
Q Consensus 393 ~ 393 (424)
+
T Consensus 703 V 703 (705)
T KOG0639|consen 703 V 703 (705)
T ss_pred E
Confidence 6
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=178.67 Aligned_cols=282 Identities=14% Similarity=0.198 Sum_probs=224.3
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEE
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMI 84 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 84 (424)
+.||.+.|..++-......+.+++.|. .+||.++++.++..+..|.+.|.++.|.+++..+++++| |++-.|
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSG-------D~taHI 216 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASG-------DETAHI 216 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccC-------CcchHH
Confidence 789999999999988888888988888 999999999999999999999999999999999999985 577777
Q ss_pred EEC------CC------------------------------C----cEEEEEe-ecCCeEEEEecCCceEEEe---eccE
Q psy3710 85 WDD------LK------------------------------K----QVVICLE-FNAPVKGVRLRRDKIVVVL---EGLI 120 (424)
Q Consensus 85 wd~------~~------------------------------~----~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i 120 (424)
|.. .. + .++..+. |.+.|.+..|-..+..+++ |.+-
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 751 10 0 0122333 5667777777666644443 9999
Q ss_pred EEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEE
Q psy3710 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRL 200 (424)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 200 (424)
.+||++ ++..+..+.+|... ....+-+|..+++++ ++.|.+.++||.+..-..+..|++|...|+++.|..+ ..+
T Consensus 297 nlwDVE-tge~v~~LtGHd~E--LtHcstHptQrLVvT-sSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~v 371 (481)
T KOG0300|consen 297 NLWDVE-TGEVVNILTGHDSE--LTHCSTHPTQRLVVT-SSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRV 371 (481)
T ss_pred eeeeec-cCceeccccCcchh--ccccccCCcceEEEE-eccCceeEeccchhhcceeeeecccccceeEEEEecC-Cce
Confidence 999997 89999999999866 555566777777776 9999999999999766677789999999999999875 578
Q ss_pred EEEecCCcEEEEEECCCcc-eeeEEe--cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCC---CCeeeccCCCCeEE
Q psy3710 201 ATASYKGTLIRVFDTGSGQ-KLNELR--RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER---PPLDIAAHEAPLSC 274 (424)
Q Consensus 201 ~~~~~d~~~i~iwd~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~ 274 (424)
++|+.|.+ |++||+++.+ ++.++. .+++.++++..++.+++ --++..|++||+...+. +...-++|...|+|
T Consensus 372 VSgSDDrT-vKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAi-PhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c 449 (481)
T KOG0300|consen 372 VSGSDDRT-VKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAI-PHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTC 449 (481)
T ss_pred eecCCCce-EEEeeeccccCcceeeecCCccceeEeecCCceEEe-ccCCceEEEEecCCCccccCCcccccccceeeee
Confidence 99999999 9999998763 455554 34666677666666665 77888999999987652 33345699999999
Q ss_pred EEEcCCC--CEEEEEeCCCcEEEEEECCCC
Q psy3710 275 IALNQTG--TRLATASYKGTLIRVFDTGSG 302 (424)
Q Consensus 275 ~~~~~~~--~~l~~~~~d~~~i~iwd~~~~ 302 (424)
++|..+. .-|++++.|.. +.=|++...
T Consensus 450 ~AW~eehp~cnLftcGFDR~-v~gW~in~p 478 (481)
T KOG0300|consen 450 CAWLEEHPACNLFTCGFDRM-VAGWKINTP 478 (481)
T ss_pred eeccccCcccccccccccce-eeeeEeccc
Confidence 9998643 46888999998 888887654
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-25 Score=191.27 Aligned_cols=262 Identities=19% Similarity=0.311 Sum_probs=201.2
Q ss_pred EEEEe-ecCCeEEEEecCCceEEEe--eccEEEEeecCCCcee--EEEeeCCCCCeeEEEeec-CCCCeEEEeeccCCeE
Q psy3710 93 VICLE-FNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQL--HVFETNPNPKGLCVLCPN-SNNSLLAFPGRKSGHV 166 (424)
Q Consensus 93 ~~~~~-~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~dg~i 166 (424)
.+.+. |...|..+++.+....+.. |+++++|+-. ..+.+ +.+..+.+-... .+++. .++..+++ |+.|+.|
T Consensus 7 s~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~-~~~~l~~~~~~~~~g~i~~-~i~y~e~~~~~l~~-g~~D~~i 83 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKK-GKQYLETHAFEGPKGFIAN-SICYAESDKGRLVV-GGMDTTI 83 (745)
T ss_pred EEEeccCccchheeEecCCeEEeecCCCCceeeeecc-CcccccceecccCcceeec-cceeccccCcceEe-ecccceE
Confidence 34555 7888999888887755554 8999999975 33333 234444432211 14444 34445666 9999999
Q ss_pred EEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEE
Q psy3710 167 HLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFP 243 (424)
Q Consensus 167 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 243 (424)
.+|..... .+...+.+|+..|.+++...++. +++||.|.+ +++|-.. ++...+++| +..+...|.+ .+++
T Consensus 84 ~v~~~~~~-~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~T-akvW~~~--~l~~~l~gH~asVWAv~~l~e~--~~vT 156 (745)
T KOG0301|consen 84 IVFKLSQA-EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDST-AKVWRIG--ELVYSLQGHTASVWAVASLPEN--TYVT 156 (745)
T ss_pred EEEecCCC-CchhhhhccccceeeeecCCcCc-eEecccccc-eEEecch--hhhcccCCcchheeeeeecCCC--cEEe
Confidence 99999986 89999999999999999888876 999999999 9999864 445556665 5556666666 6677
Q ss_pred eecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeee------------ccC
Q psy3710 244 GRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNEL------------RRD 311 (424)
Q Consensus 244 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~------------~~~ 311 (424)
|+.|.+|++|.-.+ ..+++.+|.+.|+.+++-|++ .+++++.||. |++|++ +|+++.+. .++
T Consensus 157 gsaDKtIklWk~~~---~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~-Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~ 230 (745)
T KOG0301|consen 157 GSADKTIKLWKGGT---LLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGS-IRLWDL-DGEVLLEMHGHTNFVYSISMALS 230 (745)
T ss_pred ccCcceeeeccCCc---hhhhhccchhheeeeEEecCC-CeEeecCCce-EEEEec-cCceeeeeeccceEEEEEEecCC
Confidence 99999999998743 567888999999999998874 6889999999 999999 66666543 357
Q ss_pred CcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEE
Q psy3710 312 SSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKF 391 (424)
Q Consensus 312 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~ 391 (424)
+..++++++|++++||+... +.+ .++.|...++++.+-++|. +++|++||.||||
T Consensus 231 ~~~Ivs~gEDrtlriW~~~e--~~q----------------------~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 231 DGLIVSTGEDRTLRIWKKDE--CVQ----------------------VITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred CCeEEEecCCceEEEeecCc--eEE----------------------EEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 78899999999999999873 322 2445556677888888886 6779999999999
Q ss_pred EecC
Q psy3710 392 MFNS 395 (424)
Q Consensus 392 ~~~~ 395 (424)
...+
T Consensus 286 T~~k 289 (745)
T KOG0301|consen 286 TVDK 289 (745)
T ss_pred Eecc
Confidence 9874
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=171.54 Aligned_cols=243 Identities=14% Similarity=0.205 Sum_probs=192.5
Q ss_pred ccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe--eccEEEEeec
Q psy3710 49 FTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL--EGLIKVYTFI 126 (424)
Q Consensus 49 ~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~ 126 (424)
.+...|+.+.|++.++.|+.++ .|+.+++||.........+.|..++.+++|.++...+.. ||.|+.+|+.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvss-------WDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSS-------WDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLN 83 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEe-------ccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEec
Confidence 3467899999999999999888 799999999999988889999999999999998766665 9999999995
Q ss_pred CCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecC
Q psy3710 127 QCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK 206 (424)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 206 (424)
+ .....+..|..+ +.++..++....+++ |+.|++|++||.+.. .....+.. ...|.++... |+.|+.|+.+
T Consensus 84 -~-~~~~~igth~~~--i~ci~~~~~~~~vIs-gsWD~~ik~wD~R~~-~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~ 154 (323)
T KOG1036|consen 84 -T-GNEDQIGTHDEG--IRCIEYSYEVGCVIS-GSWDKTIKFWDPRNK-VVVGTFDQ-GKKVYCMDVS--GNRLVVGTSD 154 (323)
T ss_pred -C-CcceeeccCCCc--eEEEEeeccCCeEEE-cccCccEEEEecccc-cccccccc-CceEEEEecc--CCEEEEeecC
Confidence 3 334445566644 778888877777887 999999999999863 33333332 3478888765 6789999999
Q ss_pred CcEEEEEECCCcceee-----EEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCC---CCCeeeccCC---------
Q psy3710 207 GTLIRVFDTGSGQKLN-----ELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE---RPPLDIAAHE--------- 269 (424)
Q Consensus 207 ~~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~---~~~~~~~~~~--------- 269 (424)
.. +.+||+++..... .++-..+++++.|++.-+++ ++-||.|.+=.++..+ .....++.|.
T Consensus 155 r~-v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~-sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~ 232 (323)
T KOG1036|consen 155 RK-VLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVV-SSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEII 232 (323)
T ss_pred ce-EEEEEcccccchhhhccccceeEEEEEEEecCCCceEE-EeecceEEEEccCCchHHhhhceeEEeeecccCCceEE
Confidence 99 9999999875443 34455788999997777766 9999999887666542 1233455564
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeecc
Q psy3710 270 APLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR 310 (424)
Q Consensus 270 ~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~ 310 (424)
-+|++|+|+|--..||||+.||. |.+||+.+.+.+.+|.+
T Consensus 233 yPVNai~Fhp~~~tfaTgGsDG~-V~~Wd~~~rKrl~q~~~ 272 (323)
T KOG1036|consen 233 YPVNAIAFHPIHGTFATGGSDGI-VNIWDLFNRKRLKQLAK 272 (323)
T ss_pred EEeceeEeccccceEEecCCCce-EEEccCcchhhhhhccC
Confidence 27999999999889999999999 99999999888776654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-23 Score=183.23 Aligned_cols=253 Identities=16% Similarity=0.207 Sum_probs=189.4
Q ss_pred CCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEE-Ee---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCC
Q psy3710 78 PNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVV-VL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNN 153 (424)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (424)
.|+.+++||..+++.+..+.....+.+++|+|++..+ ++ ++.|++||.. +++....+..+.. ...+.++|++
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~~~~~~---~~~~~~~~~g 84 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLA-TGEVIGTLPSGPD---PELFALHPNG 84 (300)
T ss_pred CCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECC-CCcEEEeccCCCC---ccEEEECCCC
Confidence 4899999999999998888866667889999998654 33 6899999986 6666665554332 3457889999
Q ss_pred CeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEec--ceeee
Q psy3710 154 SLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR--GLCVL 231 (424)
Q Consensus 154 ~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~--~~~~~ 231 (424)
+.+++++..++.+++||+.+. ..+..+. +...+.+++|+|+|+.+++++.++..+.+||.++++....... ....+
T Consensus 85 ~~l~~~~~~~~~l~~~d~~~~-~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (300)
T TIGR03866 85 KILYIANEDDNLVTVIDIETR-KVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFA 162 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCC-eEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEE
Confidence 988775667899999999875 4444443 2345688999999999999887754267889988877655432 35567
Q ss_pred eecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccC-------CCCeEEEEEcCCCCEEEEE-eCCCcEEEEEECCCCc
Q psy3710 232 CPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAH-------EAPLSCIALNQTGTRLATA-SYKGTLIRVFDTGSGQ 303 (424)
Q Consensus 232 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~-~~d~~~i~iwd~~~~~ 303 (424)
++++++..+++++..++.|++||+.+++.. ..+..+ ......++|+|++++++.+ +.++. +.+||.++++
T Consensus 163 ~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~-i~v~d~~~~~ 240 (300)
T TIGR03866 163 EFTADGKELWVSSEIGGTVSVIDVATRKVI-KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR-VAVVDAKTYE 240 (300)
T ss_pred EECCCCCEEEEEcCCCCEEEEEEcCcceee-eeeeecccccccccCCccceEECCCCCEEEEEcCCCCe-EEEEECCCCc
Confidence 899999998887778999999999987532 222111 1123568899999986554 45667 9999999887
Q ss_pred eeee-----------eccCCcEEEEE-eCCCcEEEEEcccccccccc
Q psy3710 304 KLNE-----------LRRDSSYLCVS-SDHGTVHVFSVDEAQKINKQ 338 (424)
Q Consensus 304 ~~~~-----------~~~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~ 338 (424)
.+.. |+|+|++|+++ +.++.|++||+.+++.+.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 241 VLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred EEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 6643 56899998876 46899999999998765543
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=185.37 Aligned_cols=262 Identities=13% Similarity=0.154 Sum_probs=206.9
Q ss_pred ecCCeEEEEecCCc-eEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCC
Q psy3710 98 FNAPVKGVRLRRDK-IVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLAD 173 (424)
Q Consensus 98 ~~~~v~~~~~~~~~-~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~ 173 (424)
|.+.|.+++=+|.. ..+++ ||.|++||+. ...+...++.|.+. +..++++. ..+++ ++.|.+|+.|.+..
T Consensus 65 HrdGV~~lakhp~~ls~~aSGs~DG~VkiWnls-qR~~~~~f~AH~G~--V~Gi~v~~--~~~~t-vgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 65 HRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLS-QRECIRTFKAHEGL--VRGICVTQ--TSFFT-VGDDKTVKQWKIDG 138 (433)
T ss_pred cccccchhhcCcchhhhhhccccCceEEEEehh-hhhhhheeecccCc--eeeEEecc--cceEE-ecCCcceeeeeccC
Confidence 78889999999987 33443 9999999997 77888999999866 55566554 45665 89999999999886
Q ss_pred CCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEeecCCeE
Q psy3710 174 PERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGRKSGHV 250 (424)
Q Consensus 174 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i 250 (424)
.+..++.+ ...+..+.-+..+..+++++++ |.|||..-..++..+.-+ +.++.++|....+++++..|+.|
T Consensus 139 --~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~---i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 139 --PPLHTILG-KSVYLGIDHHRKNSVFATCGEQ---IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred --Ccceeeec-cccccccccccccccccccCce---eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 35555543 4567777777777889998765 899999988888888754 67889999999999999999999
Q ss_pred EEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCcee-------------eeeccCCcEEEE
Q psy3710 251 HLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL-------------NELRRDSSYLCV 317 (424)
Q Consensus 251 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~-------------~~~~~~~~~l~~ 317 (424)
.+||++......... ....-+.|+|+|.+-.+.+|+.|.. ++.+|++..+.. -.|+|.|+-+++
T Consensus 213 vLyD~R~~~Pl~KVi--~~mRTN~IswnPeafnF~~a~ED~n-lY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvs 289 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVI--LTMRTNTICWNPEAFNFVAANEDHN-LYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVS 289 (433)
T ss_pred EEEecccCCccceee--eeccccceecCccccceeecccccc-ceehhhhhhcccchhhcccceeEEEeccCCCcchhcc
Confidence 999999987544432 2345678899998888999999999 999999864321 137899999999
Q ss_pred EeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecC
Q psy3710 318 SSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 318 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~ 395 (424)
||.|.+|+||....+..-... .. ..-+.|.++.||.|.+|+++||+|+.|++|.-..
T Consensus 290 gsyDksIRIf~~~~~~SRdiY--------ht-------------kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 290 GSYDKSIRIFPVNHGHSRDIY--------HT-------------KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred ccccceEEEeecCCCcchhhh--------hH-------------hhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 999999999999886431110 00 0013467899999999999999999999999764
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=187.92 Aligned_cols=232 Identities=18% Similarity=0.273 Sum_probs=178.6
Q ss_pred CCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccc----cccCCeEEEEEccCCCEEEEEecCCcEEEEEEC
Q psy3710 140 NPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA----AHEAPLSCIALNQTGTRLATASYKGTLIRVFDT 215 (424)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~ 215 (424)
+...+.++++.|.|..+++ |+.|-.|++||+.........++ .....|.+++|++.|..|++.+.... .+++|-
T Consensus 166 gtk~Vsal~~Dp~GaR~~s-Gs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq-akl~DR 243 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVS-GSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ-AKLLDR 243 (641)
T ss_pred CceEEEEeeecCCCceeee-ccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc-eeEEcc
Confidence 3456889999999999998 99999999999986533333222 34568999999999999999888888 999996
Q ss_pred CCcceeeEEe------------cc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec-----cCCCCeEEE
Q psy3710 216 GSGQKLNELR------------RG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA-----AHEAPLSCI 275 (424)
Q Consensus 216 ~~~~~~~~~~------------~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~~ 275 (424)
...+.....+ +| +.+-||+|.....+++++.||++++||+.+.+.....++ +..-+++.+
T Consensus 244 dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC 323 (641)
T KOG0772|consen 244 DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSC 323 (641)
T ss_pred CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceee
Confidence 5444333332 22 466799999999999999999999999998775444432 445678999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEECCCCce-----------------eeeeccCCcEEEEEeCCCcEEEEEcccccc-ccc
Q psy3710 276 ALNQTGTRLATASYKGTLIRVFDTGSGQK-----------------LNELRRDSSYLCVSSDHGTVHVFSVDEAQK-INK 337 (424)
Q Consensus 276 ~~~~~~~~l~~~~~d~~~i~iwd~~~~~~-----------------~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~-~~~ 337 (424)
+|+|||+.+|+|+.||. |.+|+..+... -..|+++|++|++-+.|+++++||++..++ +..
T Consensus 324 ~~nrdg~~iAagc~DGS-IQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~ 402 (641)
T KOG0772|consen 324 AWNRDGKLIAAGCLDGS-IQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV 402 (641)
T ss_pred ecCCCcchhhhcccCCc-eeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh
Confidence 99999999999999999 99999754211 124889999999999999999999988543 222
Q ss_pred cccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEec------cCcEEEEEec
Q psy3710 338 QSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICA------DGSYYKFMFN 394 (424)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------dg~v~~~~~~ 394 (424)
...+ |. .-+-+.|+|||+.+.|++|++ .|.+++|+-.
T Consensus 403 ~tgL------~t--------------~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~ 445 (641)
T KOG0772|consen 403 RTGL------PT--------------PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM 445 (641)
T ss_pred hcCC------Cc--------------cCCCCccccCCCceEEEecccccCCCCCceEEEEecc
Confidence 1111 11 123468999999999999876 4678888765
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-25 Score=182.25 Aligned_cols=277 Identities=15% Similarity=0.207 Sum_probs=202.9
Q ss_pred CCeEEEEECCCCcEEEEEeec--CCeEEEE-ecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCC
Q psy3710 79 NNRVMIWDDLKKQVVICLEFN--APVKGVR-LRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNN 153 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~~~--~~v~~~~-~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (424)
..++.+||+++|....+++.. ..-.++. ..+...+.+. ...+.+|.+....+..+. . --|..+.++.-+|+|
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~-~--v~Pg~v~al~s~n~G 93 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQY-I--VLPGPVHALASSNLG 93 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhh-c--ccccceeeeecCCCc
Confidence 467999999999999888843 2222222 2333333333 568999998533332211 1 223447889999999
Q ss_pred CeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeee
Q psy3710 154 SLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCP 233 (424)
Q Consensus 154 ~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~ 233 (424)
.+++. |...|.|++|.+.++ ..+..+.+|-..|+++.|+.||.+|++|+.||. |.+|.+..-
T Consensus 94 ~~l~a-g~i~g~lYlWelssG-~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~-V~vW~l~~l--------------- 155 (476)
T KOG0646|consen 94 YFLLA-GTISGNLYLWELSSG-ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGA-VLVWLLTDL--------------- 155 (476)
T ss_pred eEEEe-ecccCcEEEEEeccc-cHHHHHHhhccceeEEEEeCCCcEEEecCCCcc-EEEEEEEee---------------
Confidence 99997 879999999999998 788889999999999999999999999999999 999997421
Q ss_pred cCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEECCCCceeeee---
Q psy3710 234 NSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT--GTRLATASYKGTLIRVFDTGSGQKLNEL--- 308 (424)
Q Consensus 234 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~~i~iwd~~~~~~~~~~--- 308 (424)
++...++ ...+...+..|.-+|+++...+. ..+|+|+|.|.+ +++||+..|..+.++
T Consensus 156 --------v~a~~~~---------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t-~k~wdlS~g~LLlti~fp 217 (476)
T KOG0646|consen 156 --------VSADNDH---------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRT-IKLWDLSLGVLLLTITFP 217 (476)
T ss_pred --------cccccCC---------CccceeeeccCcceeEEEEecCCCccceEEEecCCce-EEEEEeccceeeEEEecC
Confidence 0111111 11245666799999999988764 468999999999 999999999988864
Q ss_pred --------ccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCC--CceEEEEecCCCe
Q psy3710 309 --------RRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSD--PPCICAFGADSNS 378 (424)
Q Consensus 309 --------~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~ 378 (424)
.|.++.+..|+.+|.|.+.++........ .+. ........-.+..+..|.+ .|++++.+.||..
T Consensus 218 ~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~--~v~----~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgtl 291 (476)
T KOG0646|consen 218 SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSA--GVN----QKGRHEENTQINVLVGHENESAITCLAISTDGTL 291 (476)
T ss_pred CcceeEEEcccccEEEecCCcceEEeeehhcCCcccc--ccc----ccccccccceeeeeccccCCcceeEEEEecCccE
Confidence 47889999999999999999876432111 000 0000011112233556666 8999999999999
Q ss_pred EEEEeccCcEEEEEecCCcceee
Q psy3710 379 IIVICADGSYYKFMFNSKGECWR 401 (424)
Q Consensus 379 l~~~~~dg~v~~~~~~~~~~~~~ 401 (424)
|++|+.||.|.+||+. ...|+|
T Consensus 292 LlSGd~dg~VcvWdi~-S~Q~iR 313 (476)
T KOG0646|consen 292 LLSGDEDGKVCVWDIY-SKQCIR 313 (476)
T ss_pred EEeeCCCCCEEEEecc-hHHHHH
Confidence 9999999999999997 555555
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-23 Score=156.39 Aligned_cols=281 Identities=15% Similarity=0.223 Sum_probs=206.1
Q ss_pred EEEEeecCCeEEEEecCCceEEEe---eccEEEEee------cCC----Cce--eEEEeeCCCCCeeEEEeecCCCCeEE
Q psy3710 93 VICLEFNAPVKGVRLRRDKIVVVL---EGLIKVYTF------IQC----PQQ--LHVFETNPNPKGLCVLCPNSNNSLLA 157 (424)
Q Consensus 93 ~~~~~~~~~v~~~~~~~~~~~~~~---~~~i~v~~~------~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (424)
+..+.....|++++|+|.|.+.+. ..++++-.. +.. .++ +..-+...+...+.+.+|+|+|++|+
T Consensus 26 i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gelia 105 (350)
T KOG0641|consen 26 INILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIA 105 (350)
T ss_pred EEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEE
Confidence 334445778999999999977765 445555432 100 011 11112222345688999999999999
Q ss_pred EeeccCCeEEEEeCCCCC----CCCcccccccCCeEEEEEccC----CCEEEEEec-CCcEEEEEECCCcceeeEEecce
Q psy3710 158 FPGRKSGHVHLVDLADPE----RPPLDIAAHEAPLSCIALNQT----GTRLATASY-KGTLIRVFDTGSGQKLNELRRGL 228 (424)
Q Consensus 158 ~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~-d~~~i~iwd~~~~~~~~~~~~~~ 228 (424)
+ |+.|..|++...+... ..-..+.-|.+.|..++|-.+ |..|++++. |.. |++-|...++..+.+.++.
T Consensus 106 t-gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~-iy~tdc~~g~~~~a~sght 183 (350)
T KOG0641|consen 106 T-GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK-IYITDCGRGQGFHALSGHT 183 (350)
T ss_pred e-cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce-EEEeecCCCCcceeecCCc
Confidence 8 9999999998766431 133467789999999999653 456777654 555 8888999999998888773
Q ss_pred -eeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCe---eecc---CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCC
Q psy3710 229 -CVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL---DIAA---HEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 229 -~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~---~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~ 301 (424)
..+++-.-++.++++|+.|.+|++||++-+..... .+.. ..+.|.+++..|.|++|++|-.|.. ..+||++.
T Consensus 184 ghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-c~lydirg 262 (350)
T KOG0641|consen 184 GHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-CMLYDIRG 262 (350)
T ss_pred ccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-eEEEEeeC
Confidence 34444444567788899999999999987653211 1111 2367999999999999999999999 99999999
Q ss_pred Cceeeee------------ccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceE
Q psy3710 302 GQKLNEL------------RRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCI 369 (424)
Q Consensus 302 ~~~~~~~------------~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (424)
++.++.| +|...|+.+++.|..|++-|+.. ....+++. .-+..|...+..
T Consensus 263 ~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg-dla~el~~-----------------~vv~ehkdk~i~ 324 (350)
T KOG0641|consen 263 GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAHELPI-----------------MVVAEHKDKAIQ 324 (350)
T ss_pred CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc-chhhcCce-----------------EEEEeccCceEE
Confidence 9998875 45678999999999999999976 33222221 113346677889
Q ss_pred EEEecCCCeEEEEeccCcEEEEEec
Q psy3710 370 CAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 370 ~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
+.|.|..--+++.+.|.++.+|.++
T Consensus 325 ~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 325 CRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEecCccceeeeccCcceEEEeccC
Confidence 9999998889999999999999875
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=196.81 Aligned_cols=280 Identities=16% Similarity=0.223 Sum_probs=215.6
Q ss_pred CceEEEEECCCCCeeEeecCCeEEEEeCCcCccccc--ccc---c--CCCeeeEEEe-ccCceEEEEeCCcCCCcCCCeE
Q psy3710 11 NGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKER--QDF---T--DGGLGHVEML-FRCNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~--~~~---~--~~~i~~~~~~-~~~~~l~~~~~~~~~~~~d~~i 82 (424)
....+|..+++-..+++++..-++||.+.+...... ... . .-....+.|. ...++|++++ ..|.|
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s-------~nG~i 112 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCS-------TNGVI 112 (839)
T ss_pred cccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeec-------CCCcE
Confidence 445677788998889988888899998776543211 110 0 1133445564 3457888888 57999
Q ss_pred EEEECCC---CcEEEEEe-ecCCeEEEEecCCce-EEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCC
Q psy3710 83 MIWDDLK---KQVVICLE-FNAPVKGVRLRRDKI-VVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNS 154 (424)
Q Consensus 83 ~iwd~~~---~~~~~~~~-~~~~v~~~~~~~~~~-~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (424)
.+||+.. .+.+..+. |...++++.|++..- ++.+ ||.|++||++ ......++.... ..+..+.|+|...
T Consensus 113 ~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR-~~~S~~t~~~nS--ESiRDV~fsp~~~ 189 (839)
T KOG0269|consen 113 SVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR-SKKSKSTFRSNS--ESIRDVKFSPGYG 189 (839)
T ss_pred EEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee-cccccccccccc--hhhhceeeccCCC
Confidence 9999976 44555565 899999999987652 2222 9999999998 555555665544 3466677777555
Q ss_pred eEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcce--eeEEe--cceee
Q psy3710 155 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK--LNELR--RGLCV 230 (424)
Q Consensus 155 ~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~--~~~~~--~~~~~ 230 (424)
..++++.+.|.+++||++...+....+.+|.++|.++.|+|++.+||+|+.|+. |+|||+.+++. +.++. .++..
T Consensus 190 ~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~~~~~~~tInTiapv~r 268 (839)
T KOG0269|consen 190 NKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDSRAKPKHTINTIAPVGR 268 (839)
T ss_pred ceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCCCccceeEEeecceeee
Confidence 555559999999999999988888899999999999999999999999999999 99999986643 33333 34788
Q ss_pred eeecCCCCeEEEEee--cCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEECCCC
Q psy3710 231 LCPNSNNSLLAFPGR--KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ-TGTRLATASYKGTLIRVFDTGSG 302 (424)
Q Consensus 231 ~~~~~~~~~~~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~~i~iwd~~~~ 302 (424)
+.|-|...+.+++++ .|-.|++||++.+-.+..++..|...++.++|.. |...+.+++.|++ |..-.++++
T Consensus 269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~t-v~qh~~kna 342 (839)
T KOG0269|consen 269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGT-VLQHLFKNA 342 (839)
T ss_pred eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccH-HHHhhhhcc
Confidence 999999988887655 5789999999999999999999999999999976 5678999999998 666555543
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=171.35 Aligned_cols=247 Identities=13% Similarity=0.143 Sum_probs=192.0
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcc---cccccccCCCeeeEEEec--cCceEEEEeCCcCCCcCC
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKE---KERQDFTDGGLGHVEMLF--RCNYLALVGGGTHPKYPN 79 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~---~~~~~~~~~~i~~~~~~~--~~~~l~~~~~~~~~~~~d 79 (424)
..+|++.|+.+...-.|++||+++.|+ |+|+...+... +..+..|.+++..++|.. -|..|++++ .|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs-------YD 79 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCS-------YD 79 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEee-------cC
Confidence 467999999999999999999998888 99999876654 555777999999999998 788999988 68
Q ss_pred CeEEEEECCCCcEEEEEe---ecCCeEEEEecCCc--eEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecC
Q psy3710 80 NRVMIWDDLKKQVVICLE---FNAPVKGVRLRRDK--IVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNS 151 (424)
Q Consensus 80 ~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~--~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (424)
+.|.||.-+.|+-.+... |...|++++|.|.. ..+++ ||.|.|++.+..+.-........++.++.+++|.|
T Consensus 80 gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswap 159 (299)
T KOG1332|consen 80 GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAP 159 (299)
T ss_pred ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecC
Confidence 999999988886554443 78999999999875 45543 99999999975533332222233446788888877
Q ss_pred C---C-----------CeEEEeeccCCeEEEEeCCCCC-CCCcccccccCCeEEEEEccCC----CEEEEEecCCcEEEE
Q psy3710 152 N---N-----------SLLAFPGRKSGHVHLVDLADPE-RPPLDIAAHEAPLSCIALNQTG----TRLATASYKGTLIRV 212 (424)
Q Consensus 152 ~---~-----------~~l~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~~i~i 212 (424)
. | +.|++ |+.|..|+||+...+. .....+.+|.+.|+.++|.|.- .+|++++.||+ +.|
T Consensus 160 a~~~g~~~~~~~~~~~krlvS-gGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-viI 237 (299)
T KOG1332|consen 160 ASAPGSLVDQGPAAKVKRLVS-GGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-VII 237 (299)
T ss_pred cCCCccccccCcccccceeec-cCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-EEE
Confidence 5 3 45777 9999999999998752 2233589999999999999953 57999999999 999
Q ss_pred EECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCc
Q psy3710 213 FDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGT 292 (424)
Q Consensus 213 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 292 (424)
|..+.... +. ....+......+..+.||+.|+.|+.++.|..
T Consensus 238 wt~~~e~e--~w------------------------------------k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNk 279 (299)
T KOG1332|consen 238 WTKDEEYE--PW------------------------------------KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNK 279 (299)
T ss_pred EEecCccC--cc------------------------------------cccccccCCcceEEEEEeccccEEEEecCCcE
Confidence 98752111 00 11222345678899999999999999999999
Q ss_pred EEEEEECC
Q psy3710 293 LIRVFDTG 300 (424)
Q Consensus 293 ~i~iwd~~ 300 (424)
|.+|.-.
T Consensus 280 -vtlwke~ 286 (299)
T KOG1332|consen 280 -VTLWKEN 286 (299)
T ss_pred -EEEEEeC
Confidence 9999754
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-24 Score=178.79 Aligned_cols=283 Identities=16% Similarity=0.207 Sum_probs=213.3
Q ss_pred cCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECC--CCcEEEEEe-ecCCeEEEEecCCce-EEEe---eccEEE
Q psy3710 50 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL--KKQVVICLE-FNAPVKGVRLRRDKI-VVVL---EGLIKV 122 (424)
Q Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~--~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~---~~~i~v 122 (424)
..+.|+++.|.|....+++++ .|++++||.+. +...++.+. ...+|.+..|.|+|. .+++ ...++.
T Consensus 212 s~~~I~sv~FHp~~plllvaG-------~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ys 284 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAG-------LDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYS 284 (514)
T ss_pred CcCCceEEEecCCCceEEEec-------CCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEE
Confidence 367899999999999999998 68999999874 344555555 377999999999997 5554 557899
Q ss_pred EeecCCCcee--EEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEE
Q psy3710 123 YTFIQCPQQL--HVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRL 200 (424)
Q Consensus 123 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 200 (424)
||+. +.+.. ....+.. ...+-.+..++++++|+. .+..|.|.+....++ ..+..++ -.+.|..+.|+.+++.|
T Consensus 285 yDle-~ak~~k~~~~~g~e-~~~~e~FeVShd~~fia~-~G~~G~I~lLhakT~-eli~s~K-ieG~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 285 YDLE-TAKVTKLKPPYGVE-EKSMERFEVSHDSNFIAI-AGNNGHIHLLHAKTK-ELITSFK-IEGVVSDFTFSSDSKEL 359 (514)
T ss_pred eecc-ccccccccCCCCcc-cchhheeEecCCCCeEEE-cccCceEEeehhhhh-hhhheee-eccEEeeEEEecCCcEE
Confidence 9995 33322 2222222 234567888999999999 999999999998885 5555554 46889999999999999
Q ss_pred EEEecCCcEEEEEECCCcceeeEEecc----eeeeeecCCCCeEEEEeecCCeEEEEeCCCC-----CCCCeeeccCCCC
Q psy3710 201 ATASYKGTLIRVFDTGSGQKLNELRRG----LCVLCPNSNNSLLAFPGRKSGHVHLVDLADP-----ERPPLDIAAHEAP 271 (424)
Q Consensus 201 ~~~~~d~~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~ 271 (424)
++++.+|. |.+||++...+++.+... -..+|.++++.+++ +|+..|.|.|||.++. .+|+..+..-...
T Consensus 360 ~~~~~~Ge-V~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA-~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~ 437 (514)
T KOG2055|consen 360 LASGGTGE-VYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLA-TGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTA 437 (514)
T ss_pred EEEcCCce-EEEEecCCcceEEEEeecCccceeeeeecCCCceEE-eccCcceEEEeccchhhccCCCCchhhhhhhhee
Confidence 99999999 999999999999988743 56788888888555 5999999999997642 2456666677889
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccc
Q psy3710 272 LSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYF 351 (424)
Q Consensus 272 v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 351 (424)
|++|+|+||.+.||.+|.-.. ..+++-.+.+.......+.
T Consensus 438 Itsl~Fn~d~qiLAiaS~~~k-----------------------------nalrLVHvPS~TVFsNfP~----------- 477 (514)
T KOG2055|consen 438 ITSLQFNHDAQILAIASRVKK-----------------------------NALRLVHVPSCTVFSNFPT----------- 477 (514)
T ss_pred eeeeeeCcchhhhhhhhhccc-----------------------------cceEEEeccceeeeccCCC-----------
Confidence 999999999999988876432 2333333333211111000
Q ss_pred cCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 352 SSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
...+-+.+++++|||.|.+|++|..+|.+.+|.+.
T Consensus 478 --------~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 478 --------SNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred --------CCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 00112457899999999999999999999999985
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-24 Score=192.05 Aligned_cols=252 Identities=19% Similarity=0.245 Sum_probs=205.2
Q ss_pred CeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcc--
Q psy3710 142 KGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ-- 219 (424)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~-- 219 (424)
.+.+.+++.|+|++|++ ++.||.|++|+..........+..+...|.+++-. +.+|++++.+++ |.+|.+.+++
T Consensus 14 ~G~t~i~~d~~gefi~t-cgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~t-v~~y~fps~~~~ 89 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICT-CGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNT-VLRYKFPSGEED 89 (933)
T ss_pred CceEEEEEcCCCCEEEE-ecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccce-EEEeeCCCCCcc
Confidence 45788999999999888 99999999999877534444555477888888764 459999999999 9999998764
Q ss_pred -eeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEE
Q psy3710 220 -KLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298 (424)
Q Consensus 220 -~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd 298 (424)
.+..|..++..++++.+|..+++ |++|-.|++.++..... ...+.+|+++|.++.|+|++++||+.+-||. |++||
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~~iaa-gsdD~~vK~~~~~D~s~-~~~lrgh~apVl~l~~~p~~~fLAvss~dG~-v~iw~ 166 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGKMIAA-GSDDTAVKLLNLDDSSQ-EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK-VQIWD 166 (933)
T ss_pred ceeeeeeccceEEEEecCCcEEEe-ecCceeEEEEeccccch-heeecccCCceeeeeEcCCCCEEEEEecCce-EEEEE
Confidence 66788889999999999998888 99999999999988663 5677799999999999999999999999999 99999
Q ss_pred CCCCceeee--------------------eccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceee
Q psy3710 299 TGSGQKLNE--------------------LRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFC 358 (424)
Q Consensus 299 ~~~~~~~~~--------------------~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (424)
+.++.+..+ |+|+|..++..+.|+.|++|+..+.+....+..-
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~----------------- 229 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK----------------- 229 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc-----------------
Confidence 998876553 5689888999999999999999997765433221
Q ss_pred EEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCCcce-eeeeehhhheecCCCceeeEEE
Q psy3710 359 KFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGEC-WRDVYIQFLEMTNDSNLLSCIE 421 (424)
Q Consensus 359 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~-~~~~~~~~~~~~~d~~~l~~~~ 421 (424)
.+...++.+.|+|+|+|||+++-||.|.||+++. -+. .....+..+.|.|+++-+.+++
T Consensus 230 ---~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t-~~~~~~~~~Vc~~aw~p~~n~it~~~ 289 (933)
T KOG1274|consen 230 ---LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT-HERHEFKRAVCCEAWKPNANAITLIT 289 (933)
T ss_pred ---ccccceEEEEEcCCCcEEeeeccCCcEEEEeccc-chhccccceeEEEecCCCCCeeEEEe
Confidence 1223378999999999999999999999999984 222 1122345677888888777665
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=192.74 Aligned_cols=224 Identities=17% Similarity=0.268 Sum_probs=187.6
Q ss_pred CCCCeEEEeeccCCeEEEEeCCCCCC-----CCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCc--ceeeE
Q psy3710 151 SNNSLLAFPGRKSGHVHLVDLADPER-----PPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG--QKLNE 223 (424)
Q Consensus 151 ~~~~~l~~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~--~~~~~ 223 (424)
|.+++|++ |+.||.|++|+...... ....++.|.+.|..++...+++.|+++|.|-+ |++|+...+ -++.+
T Consensus 35 ~~~ryLfT-gGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtT-VK~W~~~~~~~~c~st 112 (735)
T KOG0308|consen 35 PNGRYLFT-GGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTT-VKVWNAHKDNTFCMST 112 (735)
T ss_pred CCCceEEe-cCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCce-EEEeecccCcchhHhh
Confidence 45666887 99999999999875433 35678899999999999999999999999999 999999876 44555
Q ss_pred Eecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCC---------CCeeec-cCCCCeEEEEEcCCCCEEEEEeCC
Q psy3710 224 LRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER---------PPLDIA-AHEAPLSCIALNQTGTRLATASYK 290 (424)
Q Consensus 224 ~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~---------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d 290 (424)
+..| +.+++.-.....++++|+-|+.|.+||+.++.. ....+. ++..+|++++..+.|..+++|+.+
T Consensus 113 ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte 192 (735)
T KOG0308|consen 113 IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE 192 (735)
T ss_pred hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc
Confidence 5544 777777677888899999999999999997632 122333 889999999999999999999999
Q ss_pred CcEEEEEECCCCceeeee------------ccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceee
Q psy3710 291 GTLIRVFDTGSGQKLNEL------------RRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFC 358 (424)
Q Consensus 291 ~~~i~iwd~~~~~~~~~~------------~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (424)
+. +++||.++++.+..+ .+||..++++++||+|++||+...+++ +
T Consensus 193 k~-lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl----------------------~ 249 (735)
T KOG0308|consen 193 KD-LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL----------------------A 249 (735)
T ss_pred cc-eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccccee----------------------e
Confidence 99 999999998877654 468999999999999999999987764 3
Q ss_pred EEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCCcce
Q psy3710 359 KFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGEC 399 (424)
Q Consensus 359 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~ 399 (424)
++..|...++.+..+|+-..+++|+.||.|+.=++....++
T Consensus 250 T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~ 290 (735)
T KOG0308|consen 250 TYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKS 290 (735)
T ss_pred eEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhh
Confidence 46677788889999999999999999999999999854333
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-23 Score=163.97 Aligned_cols=263 Identities=17% Similarity=0.190 Sum_probs=198.9
Q ss_pred ccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEE
Q psy3710 8 TYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWD 86 (424)
Q Consensus 8 ~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd 86 (424)
.-.+.|..+.|+|.+..|++++-|| +++|++.......... |..++..++|.++. .+++.+ .|+.|+.+|
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~-~~~~G~-------~dg~vr~~D 81 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADES-TIVTGG-------LDGQVRRYD 81 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCc-eEEEec-------cCceEEEEE
Confidence 3478899999999999999888999 9999998885544333 48889888888733 333443 589999999
Q ss_pred CCCCcEEEEEeecCCeEEEEecCCc-eEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccC
Q psy3710 87 DLKKQVVICLEFNAPVKGVRLRRDK-IVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKS 163 (424)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d 163 (424)
+.++.....-.|..++.++.+++.. .+++. |+.|++||.+ .......+.. +..+.++.. .+..|++ |..+
T Consensus 82 ln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R-~~~~~~~~d~---~kkVy~~~v--~g~~LvV-g~~~ 154 (323)
T KOG1036|consen 82 LNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR-NKVVVGTFDQ---GKKVYCMDV--SGNRLVV-GTSD 154 (323)
T ss_pred ecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecc-cccccccccc---CceEEEEec--cCCEEEE-eecC
Confidence 9999988888899999999999654 44443 9999999987 3333333332 234655554 4777887 9999
Q ss_pred CeEEEEeCCCCCCCCcc-cccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCc----ceeeEEec------------
Q psy3710 164 GHVHLVDLADPERPPLD-IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG----QKLNELRR------------ 226 (424)
Q Consensus 164 g~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~----~~~~~~~~------------ 226 (424)
..+.+||+++...+.+. -..-+-.++++++.|++.-.+.++-||. |.+=.++.. +....|+.
T Consensus 155 r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred ceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce-EEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 99999999986444321 2234567899999998888999999999 887766654 23333432
Q ss_pred ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeC
Q psy3710 227 GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY 289 (424)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 289 (424)
++..++|+|-.+.+ ++|+.||.|.+||+.+.+. +..+......|.+++|+.+|..||+++.
T Consensus 234 PVNai~Fhp~~~tf-aTgGsDG~V~~Wd~~~rKr-l~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTF-ATGGSDGIVNIWDLFNRKR-LKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EeceeEeccccceE-EecCCCceEEEccCcchhh-hhhccCCCCceEEEEeccCCCeEEEEec
Confidence 26788999985555 5699999999999998764 4444455678999999999999999875
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=180.98 Aligned_cols=258 Identities=13% Similarity=0.151 Sum_probs=188.9
Q ss_pred ccccCCceEEEEECCCCC-eeEeecCCe-EEEEeCCcCcccc----------cccccCCCeeeEEEeccCceEEEEeCCc
Q psy3710 6 SSTYKNGLLYAGFNQDQG-CFACGMEDG-FRIYNCDPLKEKE----------RQDFTDGGLGHVEMLFRCNYLALVGGGT 73 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~-~la~g~~~~-i~iw~~~~~~~~~----------~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 73 (424)
...|.+.|+.+.+-|+.. ++|+++..+ +.|||........ +...|...-..++|++.....++.++
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~-- 197 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS-- 197 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc--
Confidence 456999999999999874 555677777 9999975432211 34446665566899888776655554
Q ss_pred CCCcCCCeEEEEECCCCcE-------EEEEe-ecCCeEEEEecCCce-EEEe---eccEEEEeecC-CCceeEEEeeCCC
Q psy3710 74 HPKYPNNRVMIWDDLKKQV-------VICLE-FNAPVKGVRLRRDKI-VVVL---EGLIKVYTFIQ-CPQQLHVFETNPN 140 (424)
Q Consensus 74 ~~~~~d~~i~iwd~~~~~~-------~~~~~-~~~~v~~~~~~~~~~-~~~~---~~~i~v~~~~~-~~~~~~~~~~~~~ 140 (424)
.|++|++||+..... ...+. |...|..++|++-.. ++++ |+.+.|||++. ..+.....+.|..
T Consensus 198 ----~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 198 ----DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred ----CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence 489999999864332 22334 789999999998653 3333 89999999985 3445555666664
Q ss_pred CCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCC-CEEEEEecCCcEEEEEECCCcc
Q psy3710 141 PKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTG-TRLATASYKGTLIRVFDTGSGQ 219 (424)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~~i~iwd~~~~~ 219 (424)
.+.+++|+|-+.+++++|+.|++|++||+++..+++..+.+|...|.++.|+|.. ..|++++.|+. +.+||+..-.
T Consensus 274 --~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~ig 350 (422)
T KOG0264|consen 274 --EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRIG 350 (422)
T ss_pred --ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEeccccc
Confidence 4888999998888887799999999999999888999999999999999999964 67889999999 9999996532
Q ss_pred eeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEE
Q psy3710 220 KLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT-RLATASYKGTLIRVFD 298 (424)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~~i~iwd 298 (424)
..+.-... .+ .+-.+...-.+|...|..+.|+|+.. .|++.+.|+. +.||.
T Consensus 351 ~eq~~eda------------------~d---------gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~-LqIW~ 402 (422)
T KOG0264|consen 351 EEQSPEDA------------------ED---------GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNI-LQIWQ 402 (422)
T ss_pred cccChhhh------------------cc---------CCcceeEEecCcccccccccCCCCCCeEEEEecCCce-EEEee
Confidence 22210000 00 00111223348999999999999765 5677788887 88888
Q ss_pred CC
Q psy3710 299 TG 300 (424)
Q Consensus 299 ~~ 300 (424)
+.
T Consensus 403 ~s 404 (422)
T KOG0264|consen 403 MA 404 (422)
T ss_pred cc
Confidence 75
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=185.72 Aligned_cols=302 Identities=14% Similarity=0.184 Sum_probs=224.8
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEE
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMI 84 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 84 (424)
..||++.|.|+...|.|.+||+|+++| |+||.+.++.++....+ .+.|.+++|.|.++.-+++..- ...+.|
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~------~~~~~i 468 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAV------GECVLI 468 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEe------cCceEE
Confidence 579999999999999999999999999 99999999999887777 7789999999988653333321 244667
Q ss_pred EECCCCcEEEEEeecCCeEEEEecCCceEEEe-eccEEEEeecCCCc---eeEEEeeCCCCCeeEEEeecCCCCeEEEee
Q psy3710 85 WDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQ---QLHVFETNPNPKGLCVLCPNSNNSLLAFPG 160 (424)
Q Consensus 85 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (424)
-+..-|..+............ | .-.. +..+..|.-....+ -+...-.+. ..+..+.|+..|.+|+++.
T Consensus 469 vnp~~G~~~e~~~t~ell~~~---~---~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~--k~i~~vtWHrkGDYlatV~ 540 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASA---P---NESEPDAAVVTWSRASLDELEKGVCIVIKHP--KSIRQVTWHRKGDYLATVM 540 (733)
T ss_pred eCccccchhhhcchhhhhhcC---C---CccCCcccceeechhhhhhhccceEEEEecC--CccceeeeecCCceEEEec
Confidence 665545222111100000000 0 0000 34666776431111 122223333 4488899999999999854
Q ss_pred cc--CCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecC
Q psy3710 161 RK--SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNS 235 (424)
Q Consensus 161 ~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~ 235 (424)
.. ...|.|.++... .....|....+.|.++.|+|...+|+.++... |++||+.....+..+..+ +..++++|
T Consensus 541 ~~~~~~~VliHQLSK~-~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~--vRiYdL~kqelvKkL~tg~kwiS~msihp 617 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKR-KSQSPFRKSKGLVQRVKFHPSKPYLFVATQRS--VRIYDLSKQELVKKLLTGSKWISSMSIHP 617 (733)
T ss_pred cCCCcceEEEEecccc-cccCchhhcCCceeEEEecCCCceEEEEeccc--eEEEehhHHHHHHHHhcCCeeeeeeeecC
Confidence 43 457889999875 44456667778899999999999999888765 999999888776665544 67889999
Q ss_pred CCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC------CCcee----
Q psy3710 236 NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG------SGQKL---- 305 (424)
Q Consensus 236 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~------~~~~~---- 305 (424)
.|..+++ |+.|+.+..||+.-...+.+.+..|...+++++|++.-.++++|+.||+ +.|+.-. ..-.+
T Consensus 618 ~GDnli~-gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt-v~Vfhg~VY~Dl~qnpliVPlK 695 (733)
T KOG0650|consen 618 NGDNLIL-GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT-VIVFHGMVYNDLLQNPLIVPLK 695 (733)
T ss_pred CCCeEEE-ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCc-EEEEeeeeehhhhcCCceEeee
Confidence 9999998 9999999999999988889999999999999999999999999999999 8887432 11111
Q ss_pred ---------------eeeccCCcEEEEEeCCCcEEEE
Q psy3710 306 ---------------NELRRDSSYLCVSSDHGTVHVF 327 (424)
Q Consensus 306 ---------------~~~~~~~~~l~~~~~d~~i~iw 327 (424)
..|.|...+|++++.||+|++|
T Consensus 696 ~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 696 RLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 1267888999999999999998
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=7e-24 Score=185.10 Aligned_cols=270 Identities=13% Similarity=0.177 Sum_probs=211.3
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCccccc--ccccCCCeee-EEEeccCce-EEEEeCCcCCCcCC
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKER--QDFTDGGLGH-VEMLFRCNY-LALVGGGTHPKYPN 79 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~--~~~~~~~i~~-~~~~~~~~~-l~~~~~~~~~~~~d 79 (424)
.+.||...|..+++.+.. .++++++++ +++|+-...+-... ...|.+-+.. +++.+..+. +++.+ .|
T Consensus 9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~-------~D 80 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGG-------MD 80 (745)
T ss_pred EeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeec-------cc
Confidence 378999999999987665 677888777 99999655444332 3335666655 666664444 44444 58
Q ss_pred CeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeE
Q psy3710 80 NRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLL 156 (424)
Q Consensus 80 ~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (424)
.++.+|......+...+. |+..|.++....++.++.. |.++++|... +....+++|... +.++..-|++ .+
T Consensus 81 ~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~---~l~~~l~gH~as--VWAv~~l~e~-~~ 154 (745)
T KOG0301|consen 81 TTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG---ELVYSLQGHTAS--VWAVASLPEN-TY 154 (745)
T ss_pred ceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecch---hhhcccCCcchh--eeeeeecCCC-cE
Confidence 999999999999999998 9999999999888885554 9999999864 566667888754 7788888887 45
Q ss_pred EEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeee
Q psy3710 157 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCP 233 (424)
Q Consensus 157 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~ 233 (424)
++ |+.|.+|++|.-. ..++++.+|.+-|+.+++-+++ .+++++.||. |+.|++ +++++.++.++ +.++..
T Consensus 155 vT-gsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~-Ir~w~~-~ge~l~~~~ghtn~vYsis~ 227 (745)
T KOG0301|consen 155 VT-GSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGS-IRLWDL-DGEVLLEMHGHTNFVYSISM 227 (745)
T ss_pred Ee-ccCcceeeeccCC---chhhhhccchhheeeeEEecCC-CeEeecCCce-EEEEec-cCceeeeeeccceEEEEEEe
Confidence 55 9999999999863 6788999999999999999864 6889999999 999999 88888888877 445554
Q ss_pred cCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCC
Q psy3710 234 NSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 234 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~ 301 (424)
..++ .+++++++|++++||+... ..+.+.-....|.++.+-++|+ +++|+.||. ||||..+.
T Consensus 228 ~~~~-~~Ivs~gEDrtlriW~~~e---~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~-VrVfT~~k 289 (745)
T KOG0301|consen 228 ALSD-GLIVSTGEDRTLRIWKKDE---CVQVITLPTTSIWSAKVLLNGD-IVVGGSDGR-VRVFTVDK 289 (745)
T ss_pred cCCC-CeEEEecCCceEEEeecCc---eEEEEecCccceEEEEEeeCCC-EEEeccCce-EEEEEecc
Confidence 4444 4556699999999999873 3444444455899999988875 778899999 99998874
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=172.89 Aligned_cols=274 Identities=15% Similarity=0.186 Sum_probs=198.1
Q ss_pred eEEEeccCceEEEEeCCcCCCcCCC--eEEEEECCCCcEE--EEEeecCCeEEEEecC-------CceEEEe---eccEE
Q psy3710 56 HVEMLFRCNYLALVGGGTHPKYPNN--RVMIWDDLKKQVV--ICLEFNAPVKGVRLRR-------DKIVVVL---EGLIK 121 (424)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~d~--~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~-------~~~~~~~---~~~i~ 121 (424)
.+.+-|+.+.++++-... ... .++||+-.....- +.+-.+....|++|.. .+.++|. +..|.
T Consensus 130 e~~V~psDnlIl~ar~ed----dvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie 205 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNED----DVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE 205 (463)
T ss_pred cceeccCCcEEEEeeccC----CceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence 345556666665554332 122 4455553321111 1122356667777742 1345554 88999
Q ss_pred EEeecCCCceeE--EEe----------------eCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCccccc
Q psy3710 122 VYTFIQCPQQLH--VFE----------------TNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAA 183 (424)
Q Consensus 122 v~~~~~~~~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~ 183 (424)
|||+.--..... .+. ...+...+.+++|+..-+.++++|+.|.+|.+||+.++ ++..++..
T Consensus 206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g-~p~~s~~~ 284 (463)
T KOG0270|consen 206 IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG-KPKSSITH 284 (463)
T ss_pred EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC-Ccceehhh
Confidence 999852111111 111 11112234567777777777777999999999999998 88888889
Q ss_pred ccCCeEEEEEccC-CCEEEEEecCCcEEEEEECCC---cceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCC
Q psy3710 184 HEAPLSCIALNQT-GTRLATASYKGTLIRVFDTGS---GQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE 259 (424)
Q Consensus 184 ~~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 259 (424)
|.++|.++.|+|. ...|++|+.|++ |.+.|.+. ......+.+.+..++|.|.....+++++.||+++-+|+|+..
T Consensus 285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~-V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~ 363 (463)
T KOG0270|consen 285 HGKKVQTLEWHPYEPSVLLSGSYDGT-VALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG 363 (463)
T ss_pred cCCceeEEEecCCCceEEEeccccce-EEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC
Confidence 9999999999994 678999999999 99999994 344566778899999999999999999999999999999998
Q ss_pred CCCeeeccCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEECCCCceee------------ee--ccC-CcEEEEEeCCCc
Q psy3710 260 RPPLDIAAHEAPLSCIALNQT-GTRLATASYKGTLIRVFDTGSGQKLN------------EL--RRD-SSYLCVSSDHGT 323 (424)
Q Consensus 260 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd~~~~~~~~------------~~--~~~-~~~l~~~~~d~~ 323 (424)
.++.++++|.++|.++++++. ..++++++.|+. |++|++....... .+ .|+ .-+++.|+..+.
T Consensus 364 ~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~ 442 (463)
T KOG0270|consen 364 KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAV 442 (463)
T ss_pred CceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccce
Confidence 899999999999999999974 458999999999 9999987543321 12 233 246778888888
Q ss_pred EEEEEcccccccc
Q psy3710 324 VHVFSVDEAQKIN 336 (424)
Q Consensus 324 i~iw~~~~~~~~~ 336 (424)
++|||+.+...+.
T Consensus 443 ~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 443 LRVWDIFTNSPVR 455 (463)
T ss_pred EEEeecccChhHH
Confidence 9999999876543
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-22 Score=177.86 Aligned_cols=363 Identities=14% Similarity=0.209 Sum_probs=250.6
Q ss_pred ccCCceEEEEECCCCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCc---eEEEEeCCcCCCcCCCeEEE
Q psy3710 8 TYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCN---YLALVGGGTHPKYPNNRVMI 84 (424)
Q Consensus 8 ~h~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~~~~~~~~~d~~i~i 84 (424)
|....=....||+|++++.....+.|+||...++.++.....|..++..+.+.|... ++.+++ .||.|++
T Consensus 14 g~n~~~~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~s-------l~G~I~v 86 (792)
T KOG1963|consen 14 GRNGNKSPAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCS-------LDGTIRV 86 (792)
T ss_pred cccceecccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEe-------cCccEEE
Confidence 333333445799999999999999999999999999888888999999999988775 344555 5899999
Q ss_pred EECCCCcEEEEEeecCCeEEEEe---------------------------------------------------------
Q psy3710 85 WDDLKKQVVICLEFNAPVKGVRL--------------------------------------------------------- 107 (424)
Q Consensus 85 wd~~~~~~~~~~~~~~~v~~~~~--------------------------------------------------------- 107 (424)
||...+..++++....++.++.+
T Consensus 87 wd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I 166 (792)
T KOG1963|consen 87 WDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSI 166 (792)
T ss_pred ecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccE
Confidence 99999888877753333333222
Q ss_pred --cCCceEEE--eeccEEEEeecCCCceeEEEeeC-CCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCC---CCCCCc
Q psy3710 108 --RRDKIVVV--LEGLIKVYTFIQCPQQLHVFETN-PNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLAD---PERPPL 179 (424)
Q Consensus 108 --~~~~~~~~--~~~~i~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~---~~~~~~ 179 (424)
++.+.+.+ .+..+.+|......+.......+ .+...+.+.+++|.++++++ |..||.|.+|.--. .....+
T Consensus 167 ~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa-~d~dGrI~vw~d~~~~~~~~t~t 245 (792)
T KOG1963|consen 167 VDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAA-GDSDGRILVWRDFGSSDDSETCT 245 (792)
T ss_pred EEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEE-eccCCcEEEEeccccccccccce
Confidence 12221111 13444555543111110000000 11122577899999999998 99999999996443 123445
Q ss_pred ccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCccee--eEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCC
Q psy3710 180 DIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL--NELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLAD 257 (424)
Q Consensus 180 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 257 (424)
.+.-|..+|.+++|+++|.+|++|+..+. +.+|.+.+++.. -++...+..+.++|++....+ ...|+.|++....+
T Consensus 246 ~lHWH~~~V~~L~fS~~G~~LlSGG~E~V-Lv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl-~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 246 LLHWHHDEVNSLSFSSDGAYLLSGGREGV-LVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSL-VLEDNQIHLIKASD 323 (792)
T ss_pred EEEecccccceeEEecCCceEeecccceE-EEEEeecCCCcccccccCCeeEEEEEcCCCCeEEE-EecCceEEEEeccc
Confidence 67789999999999999999999999999 999999988732 234455788889999988887 66799999988754
Q ss_pred CCCC--Ceee--------ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec------------------
Q psy3710 258 PERP--PLDI--------AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR------------------ 309 (424)
Q Consensus 258 ~~~~--~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~------------------ 309 (424)
.... +..+ ....+-.+.++++|..+.++-.+..+. |.+||+.+.+.+..+.
T Consensus 324 l~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~-vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~it 402 (792)
T KOG1963|consen 324 LEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGH-VQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGIT 402 (792)
T ss_pred hhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCce-EEEEeccccceeeeEEEEeecccCCcceeEEeee
Confidence 3311 0001 112445677888887777888888888 8888887765544321
Q ss_pred --------------------------------------------------c--------------CCcEEEEEeCCCcEE
Q psy3710 310 --------------------------------------------------R--------------DSSYLCVSSDHGTVH 325 (424)
Q Consensus 310 --------------------------------------------------~--------------~~~~l~~~~~d~~i~ 325 (424)
| ....+++++.||.++
T Consensus 403 av~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~K 482 (792)
T KOG1963|consen 403 AVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFK 482 (792)
T ss_pred eehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEE
Confidence 1 122677888889999
Q ss_pred EEEccccccccccccceeeeccCccccCCceeeEE-eecCCCceEEEEecCCCeEEEEeccCcEEEEEecC
Q psy3710 326 VFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKF-QIPSDPPCICAFGADSNSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 326 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~ 395 (424)
||-+.+.+.+..... .|..... ..|..+++.++|+.||.. ++++.|+.|.+||...
T Consensus 483 iW~~~~~~n~~k~~s-------------~W~c~~i~sy~k~~i~a~~fs~dGsl-la~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 483 IWVFTDDSNIYKKSS-------------NWTCKAIGSYHKTPITALCFSQDGSL-LAVSFDDTITIWDYDT 539 (792)
T ss_pred EEEEecccccCcCcc-------------ceEEeeeeccccCcccchhhcCCCcE-EEEecCCEEEEecCCC
Confidence 998877554443222 2322211 136778999999999965 4566799999999985
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=176.60 Aligned_cols=270 Identities=11% Similarity=0.149 Sum_probs=215.0
Q ss_pred ceEEEEECCCCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCc
Q psy3710 12 GLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ 91 (424)
Q Consensus 12 ~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~ 91 (424)
.|+.++|-|||..|+.+.++.+.+||.+.+........|...|.+++|+.+|+.+++.+ +|+.|.+|+. .-+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~-------aDK~VI~W~~-klE 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGS-------ADKSVIIWTS-KLE 85 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCC-------CceeEEEecc-ccc
Confidence 79999999999999999999999999999999888999999999999999999998777 6899999985 445
Q ss_pred EEEEEeecCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEE
Q psy3710 92 VVICLEFNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLV 169 (424)
Q Consensus 92 ~~~~~~~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~ 169 (424)
-+..+.|.+.|.|+.|+|-...+++ -+..-+|... .+.+.. +.....+++.+|+.||++++. |-.+|+|.+-
T Consensus 86 G~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~--qK~V~K---~kss~R~~~CsWtnDGqylal-G~~nGTIsiR 159 (1081)
T KOG1538|consen 86 GILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPE--QKSVSK---HKSSSRIICCSWTNDGQYLAL-GMFNGTISIR 159 (1081)
T ss_pred ceeeeccCCeeeEeecCchHHHhhhcchhhccccChh--hhhHHh---hhhheeEEEeeecCCCcEEEE-eccCceEEee
Confidence 5666789999999999998877775 4667889864 222222 233355888899999999999 9999999998
Q ss_pred eCCCCCC-CCcccccccCCeEEEEEccCC-----CEEEEEecCCcEEEEEECCCcceee---EEecceeeeeecCCCCeE
Q psy3710 170 DLADPER-PPLDIAAHEAPLSCIALNQTG-----TRLATASYKGTLIRVFDTGSGQKLN---ELRRGLCVLCPNSNNSLL 240 (424)
Q Consensus 170 d~~~~~~-~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~d~~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~ 240 (424)
+-....+ .+....+.+.+|.+++|+|.. ..++......+ +.++.+. |+.+. .+.....++...++|.++
T Consensus 160 Nk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~ 237 (1081)
T KOG1538|consen 160 NKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYI 237 (1081)
T ss_pred cCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEEec-ceeecccccCCCCchhheeccCCcEE
Confidence 6543211 122334678999999999963 46777778787 8888874 44332 334446677888999999
Q ss_pred EEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCC
Q psy3710 241 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 241 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~ 301 (424)
++ |+.|+.+++|..+.- ..-++...+..|..++..|++++++.|+.||+ |..|++-.
T Consensus 238 Li-GGsdk~L~~fTR~Gv--rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGT-iACyNl~f 294 (1081)
T KOG1538|consen 238 LL-GGSDKQLSLFTRDGV--RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGT-IACYNLIF 294 (1081)
T ss_pred EE-ccCCCceEEEeecCe--EEeeccccceeEEEEEEccCCceEEEEEccCe-eehhhhHH
Confidence 98 889999999976542 23344457789999999999999999999999 99998753
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-23 Score=173.66 Aligned_cols=271 Identities=16% Similarity=0.177 Sum_probs=208.1
Q ss_pred CeEEEEECCCCcEEEEEee---cCCeEEEEecCCce-EEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCC
Q psy3710 80 NRVMIWDDLKKQVVICLEF---NAPVKGVRLRRDKI-VVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSN 152 (424)
Q Consensus 80 ~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~-~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (424)
.++++||....+....+.+ +..+.++.|+.... .+++ |..+++|.-......+......... ...|++....
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd-~~~Cv~~~s~ 90 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD-NAFCVACASQ 90 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc-hHHHHhhhhc
Confidence 5899999876665555542 45589999988774 4444 6788888753111112112111111 2334444555
Q ss_pred CCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc----e
Q psy3710 153 NSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG----L 228 (424)
Q Consensus 153 ~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~----~ 228 (424)
..++++ |+..+.|+|||++.. ...+.+++|...|+++.++....+|++++..|. |.+..+.++....+|..+ +
T Consensus 91 S~y~~s-gG~~~~Vkiwdl~~k-l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGd-iiih~~~t~~~tt~f~~~sgqsv 167 (673)
T KOG4378|consen 91 SLYEIS-GGQSGCVKIWDLRAK-LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGD-IIIHGTKTKQKTTTFTIDSGQSV 167 (673)
T ss_pred ceeeec-cCcCceeeehhhHHH-HHhhhccCCcceeEEEEecCCcceeEEeccCCc-EEEEecccCccccceecCCCCeE
Confidence 678887 999999999999953 667788999999999999999999999999999 999999999888888754 5
Q ss_pred eeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEECCCCceeee
Q psy3710 229 CVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ-TGTRLATASYKGTLIRVFDTGSGQKLNE 307 (424)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~~i~iwd~~~~~~~~~ 307 (424)
..+.+++....++.+++++|.|.+||+............|..+...++|+| +..+|++.+.|.. |.+||..+.+....
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD~~s~~s~~~ 246 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIYDIRSQASTDR 246 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEEeecccccccce
Confidence 678899999999999999999999999987766666779999999999999 5678899999999 99999987654443
Q ss_pred -----------eccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCC
Q psy3710 308 -----------LRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADS 376 (424)
Q Consensus 308 -----------~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 376 (424)
|.++|.+|++|+..|.|..||++..+.. +.....|...|+.++|-|..
T Consensus 247 l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P---------------------v~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 247 LTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP---------------------VAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eeecCCcceeeecCCceEEEeecCCceEEEEecccCCCC---------------------ceEeeecccceeEEEeeecc
Confidence 6689999999999999999999874321 12233455567777777654
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-22 Score=180.49 Aligned_cols=265 Identities=17% Similarity=0.225 Sum_probs=210.4
Q ss_pred cccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcC-cccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEE
Q psy3710 7 STYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPL-KEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMI 84 (424)
Q Consensus 7 ~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 84 (424)
..|...-+.++|.|+|++|.+++.++ |++|+.... +.......+...+ ..+...++++++++ .+++|.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v--~~ia~~s~~f~~~s-------~~~tv~~ 80 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELV--SSIACYSNHFLTGS-------EQNTVLR 80 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCcee--EEEeecccceEEee-------ccceEEE
Confidence 57999999999999999999888888 999997665 3333233234445 44445566777777 5899999
Q ss_pred EECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEee
Q psy3710 85 WDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPG 160 (424)
Q Consensus 85 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (424)
|....++.-..+. +.-+++.++++.+|.+++. |-.|++.++. +......+++|..+ +.++.++|++.+||+ .
T Consensus 81 y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~-D~s~~~~lrgh~ap--Vl~l~~~p~~~fLAv-s 156 (933)
T KOG1274|consen 81 YKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD-DSSQEKVLRGHDAP--VLQLSYDPKGNFLAV-S 156 (933)
T ss_pred eeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecc-ccchheeecccCCc--eeeeeEcCCCCEEEE-E
Confidence 9998888765555 7889999999999988776 7789999997 67777888888866 889999999999998 9
Q ss_pred ccCCeEEEEeCCCCCCCCccccc--------ccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc-----
Q psy3710 161 RKSGHVHLVDLADPERPPLDIAA--------HEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG----- 227 (424)
Q Consensus 161 ~~dg~i~i~d~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~----- 227 (424)
+-||.|++||+.++ .....+.+ ....+..++|+|+|..++..+.|+. |++|+..+.+....+...
T Consensus 157 s~dG~v~iw~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-Vkvy~r~~we~~f~Lr~~~~ss~ 234 (933)
T KOG1274|consen 157 SCDGKVQIWDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-VKVYSRKGWELQFKLRDKLSSSK 234 (933)
T ss_pred ecCceEEEEEcccc-hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe-EEEEccCCceeheeecccccccc
Confidence 99999999999975 33333321 1456788999999889999999999 999999999888777643
Q ss_pred eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCc
Q psy3710 228 LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGT 292 (424)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 292 (424)
+..+.|+|.|.++++ ++.+|.|.|||.++... ......|.+++|.|+.+.+-.-...|.
T Consensus 235 ~~~~~wsPnG~YiAA-s~~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~~n~it~~~~~g~ 293 (933)
T KOG1274|consen 235 FSDLQWSPNGKYIAA-STLDGQILVWNVDTHER-----HEFKRAVCCEAWKPNANAITLITALGT 293 (933)
T ss_pred eEEEEEcCCCcEEee-eccCCcEEEEecccchh-----ccccceeEEEecCCCCCeeEEEeeccc
Confidence 677899999888877 99999999999997332 244678999999998876655444443
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-23 Score=163.35 Aligned_cols=270 Identities=16% Similarity=0.179 Sum_probs=197.9
Q ss_pred ceEEEEECCCCCeeEeecCCe-EEEEeCCcCcc-------c-----ccccc-cCCCeeeEEEe-------ccCceEEEEe
Q psy3710 12 GLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKE-------K-----ERQDF-TDGGLGHVEML-------FRCNYLALVG 70 (424)
Q Consensus 12 ~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~-------~-----~~~~~-~~~~i~~~~~~-------~~~~~l~~~~ 70 (424)
-...+.|||||..|.+-+.+. +++|++....- . ..... ..+.|...+|- |+.+++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 345689999999999877666 99999742211 0 00111 23455566664 4556666666
Q ss_pred CCcCCCcCCCeEEEEECCCCcEEEEEe---ecC---CeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEee----C
Q psy3710 71 GGTHPKYPNNRVMIWDDLKKQVVICLE---FNA---PVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFET----N 138 (424)
Q Consensus 71 ~~~~~~~~d~~i~iwd~~~~~~~~~~~---~~~---~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~----~ 138 (424)
.+.-|.+||.-+|+....+. |.. ...+++|+|||..+.+ ...|++||+...++.-..... .
T Consensus 131 -------r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k 203 (406)
T KOG2919|consen 131 -------RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGK 203 (406)
T ss_pred -------ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccc
Confidence 57999999999999988776 433 4578999999976665 789999999545543322211 1
Q ss_pred CC-CCeeEEEeecCCCC-eEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECC
Q psy3710 139 PN-PKGLCVLCPNSNNS-LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 216 (424)
Q Consensus 139 ~~-~~~~~~~~~~~~~~-~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 216 (424)
.. ..-+.+++++|-.. .+++ |+....+-||.-... .+...+.+|.+.|+.+.|.++|+.|.+|+.....|..||++
T Consensus 204 ~gq~giisc~a~sP~~~~~~a~-gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 204 FGQKGIISCFAFSPMDSKTLAV-GSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred ccccceeeeeeccCCCCcceee-ecccceeeeEecCCC-CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 11 23356888998766 6666 999999999988775 78888889999999999999999999998643339999998
Q ss_pred Cc-ceeeEEeccee------eeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeC
Q psy3710 217 SG-QKLNELRRGLC------VLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY 289 (424)
Q Consensus 217 ~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 289 (424)
.. .++..+..++. .+...|.++.+ ++|+.+|.|++||++....+...+..|+..++.++++|--..+|+++.
T Consensus 282 ~~~~pv~~L~rhv~~TNQRI~FDld~~~~~L-asG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 282 YSRDPVYALERHVGDTNQRILFDLDPKGEIL-ASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred hccchhhhhhhhccCccceEEEecCCCCcee-eccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 64 44555554422 23455666555 459999999999999977677778899999999999999888888876
Q ss_pred CC
Q psy3710 290 KG 291 (424)
Q Consensus 290 d~ 291 (424)
..
T Consensus 361 qr 362 (406)
T KOG2919|consen 361 QR 362 (406)
T ss_pred ce
Confidence 54
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-23 Score=156.34 Aligned_cols=230 Identities=18% Similarity=0.244 Sum_probs=175.3
Q ss_pred cCCCCeEEEeeccCCeEEEEeCCCCC--CCCcccccccCCeEEEEEcc--CCCEEEEEecCCcEEEEEECCCcceee--E
Q psy3710 150 NSNNSLLAFPGRKSGHVHLVDLADPE--RPPLDIAAHEAPLSCIALNQ--TGTRLATASYKGTLIRVFDTGSGQKLN--E 223 (424)
Q Consensus 150 ~~~~~~l~~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~~i~iwd~~~~~~~~--~ 223 (424)
+--|+.|++ ++.|++|+|+..+... +.+.++.+|.+||..++|.. .|..|++++.||. |.||.-++++-.+ .
T Consensus 20 DyygkrlAT-csSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk-VIiWke~~g~w~k~~e 97 (299)
T KOG1332|consen 20 DYYGKRLAT-CSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK-VIIWKEENGRWTKAYE 97 (299)
T ss_pred hhhcceeee-ecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce-EEEEecCCCchhhhhh
Confidence 345889998 9999999999998764 45678999999999999975 7999999999999 9999988874322 2
Q ss_pred E---ecceeeeeecCCC-CeEEEEeecCCeEEEEeCCCCC--CCCeeeccCCCCeEEEEEcCC---C-----------CE
Q psy3710 224 L---RRGLCVLCPNSNN-SLLAFPGRKSGHVHLVDLADPE--RPPLDIAAHEAPLSCIALNQT---G-----------TR 283 (424)
Q Consensus 224 ~---~~~~~~~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~---~-----------~~ 283 (424)
. ...++.+++.|.+ ..++++++.||.|.+.+.+... ...+....|.-.|++++|.|- | +.
T Consensus 98 ~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr 177 (299)
T KOG1332|consen 98 HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR 177 (299)
T ss_pred hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence 2 2337788888864 5667789999999999998762 233445689999999999985 4 57
Q ss_pred EEEEeCCCcEEEEEECCCCceee--ee------------cc----CCcEEEEEeCCCcEEEEEccccccccccccceeee
Q psy3710 284 LATASYKGTLIRVFDTGSGQKLN--EL------------RR----DSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASAS 345 (424)
Q Consensus 284 l~~~~~d~~~i~iwd~~~~~~~~--~~------------~~----~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 345 (424)
|++|+.|.. |+||+..+++-.. +| .| .-.++|+++.||++.||..+.....-+...
T Consensus 178 lvSgGcDn~-VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tl----- 251 (299)
T KOG1332|consen 178 LVSGGCDNL-VKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTL----- 251 (299)
T ss_pred eeccCCccc-eeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccc-----
Confidence 999999999 9999998863222 12 22 235799999999999999873211111000
Q ss_pred ccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCCcceee
Q psy3710 346 FLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWR 401 (424)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~~~ 401 (424)
.+.-...+..+.||+.|+.|++++.|+.|.+|.=+..|+-.+
T Consensus 252 --------------l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~ 293 (299)
T KOG1332|consen 252 --------------LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEE 293 (299)
T ss_pred --------------cccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEE
Confidence 001123567789999999999999999999999776665544
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.1e-23 Score=170.00 Aligned_cols=275 Identities=16% Similarity=0.238 Sum_probs=211.0
Q ss_pred CCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcc--cccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEE
Q psy3710 10 KNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKE--KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWD 86 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd 86 (424)
.+.|+++.|+|....|.+++-++ ++||.++.... +....+...+|....|.|+|...+++++ ....++.||
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~------rrky~ysyD 286 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSG------RRKYLYSYD 286 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecc------cceEEEEee
Confidence 57899999999999999888888 99999865433 4445556778999999999994444443 358999999
Q ss_pred CCCCcEEEEEe---e-cCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEe
Q psy3710 87 DLKKQVVICLE---F-NAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFP 159 (424)
Q Consensus 87 ~~~~~~~~~~~---~-~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (424)
+.+.+..+.-. + ...+....+++++.+++. .|.|.+.... +++.+..++.. ..+..++|+.+++.|++
T Consensus 287 le~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhak-T~eli~s~Kie---G~v~~~~fsSdsk~l~~- 361 (514)
T KOG2055|consen 287 LETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAK-TKELITSFKIE---GVVSDFTFSSDSKELLA- 361 (514)
T ss_pred ccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhh-hhhhhheeeec---cEEeeEEEecCCcEEEE-
Confidence 98887654332 2 346778889999988886 7889998886 78888888765 34778899999999998
Q ss_pred eccCCeEEEEeCCCCCCCCcccccccCCe--EEEEEccCCCEEEEEecCCcEEEEEECCCc------ceeeE---Eecce
Q psy3710 160 GRKSGHVHLVDLADPERPPLDIAAHEAPL--SCIALNQTGTRLATASYKGTLIRVFDTGSG------QKLNE---LRRGL 228 (424)
Q Consensus 160 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~------~~~~~---~~~~~ 228 (424)
.+.+|.|.+||++.. ..+..+.. .+.| ++++.+++|.+|++|+..|. |.|||..+. +++.. +...+
T Consensus 362 ~~~~GeV~v~nl~~~-~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~Gi-VNIYd~~s~~~s~~PkPik~~dNLtt~I 438 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQN-SCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGI-VNIYDGNSCFASTNPKPIKTVDNLTTAI 438 (514)
T ss_pred EcCCceEEEEecCCc-ceEEEEee-cCccceeeeeecCCCceEEeccCcce-EEEeccchhhccCCCCchhhhhhhheee
Confidence 788899999999986 55555543 2333 56777899999999999999 999996542 34433 34568
Q ss_pred eeeeecCCCCeEEEEee-cCCeEEEEeCCCCCCCCeee---ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 229 CVLCPNSNNSLLAFPGR-KSGHVHLVDLADPERPPLDI---AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 229 ~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
..+.|+++.+.++++.. .+..+++-.+.+... ...+ ...-+.|+||+|+|.+.+||.|..+|. +.+|.+.
T Consensus 439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV-FsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr-v~l~kL~ 512 (514)
T KOG2055|consen 439 TSLQFNHDAQILAIASRVKKNALRLVHVPSCTV-FSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR-VHLFKLH 512 (514)
T ss_pred eeeeeCcchhhhhhhhhccccceEEEeccceee-eccCCCCCCcccceEEEEecCCCceEEeecCCCc-eeeEeec
Confidence 88999999999988544 467788887765431 1111 133456899999999999999999999 9999874
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=159.69 Aligned_cols=284 Identities=18% Similarity=0.234 Sum_probs=203.6
Q ss_pred ccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCc----------EEEEEe------ecCCeEEEEecCC
Q psy3710 47 QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ----------VVICLE------FNAPVKGVRLRRD 110 (424)
Q Consensus 47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~----------~~~~~~------~~~~v~~~~~~~~ 110 (424)
...|.+.|..+.+.+......+.++ +|+.|.+||++... .+..+. |.-.|..+.|-|-
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGg------adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~ 112 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGG------ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI 112 (397)
T ss_pred eccCCCccceeeeccccceEEeecC------CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee
Confidence 3457899999999887665555554 58999999987533 111111 3446888888764
Q ss_pred --ceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCC---CCeEEEeeccCCeEEEEeCCCCCCCCccccc
Q psy3710 111 --KIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSN---NSLLAFPGRKSGHVHLVDLADPERPPLDIAA 183 (424)
Q Consensus 111 --~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~ 183 (424)
|.+..+ |.+++|||.. +.+....++... .+..-+++|- ..++|+ |..+-.|++.|+.++ ..-+.+.+
T Consensus 113 DtGmFtssSFDhtlKVWDtn-TlQ~a~~F~me~---~VYshamSp~a~sHcLiA~-gtr~~~VrLCDi~SG-s~sH~LsG 186 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTN-TLQEAVDFKMEG---KVYSHAMSPMAMSHCLIAA-GTRDVQVRLCDIASG-SFSHTLSG 186 (397)
T ss_pred cCceeecccccceEEEeecc-cceeeEEeecCc---eeehhhcChhhhcceEEEE-ecCCCcEEEEeccCC-cceeeecc
Confidence 445444 9999999986 666666665443 2444444442 345555 999999999999998 78889999
Q ss_pred ccCCeEEEEEccCCCE-EEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCC-C
Q psy3710 184 HEAPLSCIALNQTGTR-LATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER-P 261 (424)
Q Consensus 184 ~~~~v~~~~~~~~~~~-l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~-~ 261 (424)
|.+.|.++.|+|...+ |++|+.||. |++||++.. .|..++.|..+.+. +
T Consensus 187 Hr~~vlaV~Wsp~~e~vLatgsaDg~-irlWDiRra----------------------------sgcf~~lD~hn~k~~p 237 (397)
T KOG4283|consen 187 HRDGVLAVEWSPSSEWVLATGSADGA-IRLWDIRRA----------------------------SGCFRVLDQHNTKRPP 237 (397)
T ss_pred ccCceEEEEeccCceeEEEecCCCce-EEEEEeecc----------------------------cceeEEeecccCccCc
Confidence 9999999999997764 688999999 999999754 12333334433221 1
Q ss_pred -CeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceee-eec----------------cCCcEEEEEeCCCc
Q psy3710 262 -PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN-ELR----------------RDSSYLCVSSDHGT 323 (424)
Q Consensus 262 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~----------------~~~~~l~~~~~d~~ 323 (424)
.+.-..|.+.++.++|+.++.++++++.|.. +++|+..+|+... .+- .+...++---.++.
T Consensus 238 ~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r-~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~ 316 (397)
T KOG4283|consen 238 ILKTNTAHYGKVNGLAWTSDARYLASCGTDDR-IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGS 316 (397)
T ss_pred cccccccccceeeeeeecccchhhhhccCccc-eEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCe
Confidence 1234589999999999999999999999999 9999999876422 111 13333443445578
Q ss_pred EEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 324 VHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 324 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
+.++++-.++.+.... .|...+.++++.|+=+...+++.|+.+..|-..
T Consensus 317 lall~~~sgs~ir~l~----------------------~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 317 LALLNLLEGSFVRRLS----------------------THLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred EEEEEccCceEEEeee----------------------cccceeeEEeecCchhhhhccccCCcccccccc
Confidence 8888888877655433 344456778889999999999999999999864
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-23 Score=162.41 Aligned_cols=241 Identities=16% Similarity=0.262 Sum_probs=179.4
Q ss_pred eEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeE
Q psy3710 144 LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE 223 (424)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~ 223 (424)
..++.|++.|.+||+ |+.||.|.|||+.+. ...+.+.+|..+|.+++|+++|+.|+++|.|.. |.+||+..|.++++
T Consensus 26 a~~~~Fs~~G~~lAv-Gc~nG~vvI~D~~T~-~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s-i~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAV-GCANGRVVIYDFDTF-RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWS-IKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeee-eccCCcEEEEEcccc-chhhhhhccccceeEEEecCCCCEeeeecCCce-eEEEeccCCCceeE
Confidence 567789999999999 999999999999996 677789999999999999999999999999999 99999999998877
Q ss_pred Ee--cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec---cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEE
Q psy3710 224 LR--RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA---AHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298 (424)
Q Consensus 224 ~~--~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd 298 (424)
+. .++....++|.....+++.-.+..-.+.++..+........ .......+..|++.|+++++|...|. +.++|
T Consensus 103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk-llv~~ 181 (405)
T KOG1273|consen 103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK-LLVYD 181 (405)
T ss_pred EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce-EEEEe
Confidence 65 55788889998887777666666666666655332111110 11112233468899999999999999 99999
Q ss_pred CCCCceeeee-------------ccCCcEEEEEeCCCcEEEEEcccccccccccccee-eeccCccccCCceeeEEeecC
Q psy3710 299 TGSGQKLNEL-------------RRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLAS-ASFLPKYFSSSWSFCKFQIPS 364 (424)
Q Consensus 299 ~~~~~~~~~~-------------~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 364 (424)
..+.+++..+ +..|+.|+.-+.|..|+.|++..-....+-..... ..+.-......|.
T Consensus 182 a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk-------- 253 (405)
T KOG1273|consen 182 AETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWK-------- 253 (405)
T ss_pred cchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhh--------
Confidence 9998887754 35889999999999999999874211111000000 0000000112233
Q ss_pred CCceEEEEecCCCeEEEEec-cCcEEEEEecCCcceee
Q psy3710 365 DPPCICAFGADSNSIIVICA-DGSYYKFMFNSKGECWR 401 (424)
Q Consensus 365 ~~~~~~~~s~~~~~l~~~~~-dg~v~~~~~~~~~~~~~ 401 (424)
.|+||.+|.|++.++. ...+++|.-. .|.+++
T Consensus 254 ----~ccfs~dgeYv~a~s~~aHaLYIWE~~-~GsLVK 286 (405)
T KOG1273|consen 254 ----KCCFSGDGEYVCAGSARAHALYIWEKS-IGSLVK 286 (405)
T ss_pred ----heeecCCccEEEeccccceeEEEEecC-Ccceee
Confidence 6899999999987775 5589999976 566665
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=173.84 Aligned_cols=279 Identities=16% Similarity=0.197 Sum_probs=201.5
Q ss_pred EEEECCC---CCeeEeecCCe-EEEEeCCcCccc------ccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEE
Q psy3710 15 YAGFNQD---QGCFACGMEDG-FRIYNCDPLKEK------ERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMI 84 (424)
Q Consensus 15 ~~~~s~~---g~~la~g~~~~-i~iw~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 84 (424)
+..|++- ...||.+.++| |.++|.....-. .....|.+.|..+.|.|....|++++| |.++++
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasG-------DsT~r~ 126 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASG-------DSTIRP 126 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccC-------Cceeee
Confidence 3667653 36788999999 999997654332 234458999999999997777888875 789999
Q ss_pred EECCCCcEEEE--E-eecCCeEEEEecCCceEEEe----eccEEEEeecCCCce-e--------EEEee---C-------
Q psy3710 85 WDDLKKQVVIC--L-EFNAPVKGVRLRRDKIVVVL----EGLIKVYTFIQCPQQ-L--------HVFET---N------- 138 (424)
Q Consensus 85 wd~~~~~~~~~--~-~~~~~v~~~~~~~~~~~~~~----~~~i~v~~~~~~~~~-~--------~~~~~---~------- 138 (424)
||+++.+.+.. + .|...|.+++|.|....++. ||.|.|||++.+... . ..... +
T Consensus 127 Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr 206 (720)
T KOG0321|consen 127 WDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKR 206 (720)
T ss_pred eeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcc
Confidence 99999888775 3 38999999999998755543 999999999743300 0 00000 0
Q ss_pred -----CCCCeeEE---EeecCCCCeEEEeeccCCeEEEEeCCCCCC-----CCc--ccccc---cCCeEEEEEccCCCEE
Q psy3710 139 -----PNPKGLCV---LCPNSNNSLLAFPGRKSGHVHLVDLADPER-----PPL--DIAAH---EAPLSCIALNQTGTRL 200 (424)
Q Consensus 139 -----~~~~~~~~---~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~-----~~~--~~~~~---~~~v~~~~~~~~~~~l 200 (424)
.....+.. +.+..|...||++|..|+.|++||+++... +.. .+..| .-.+.++.....|.+|
T Consensus 207 ~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 207 IRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred ccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence 00111222 455678888998666699999999987521 111 22233 3356777777788888
Q ss_pred EEEecCCcEEEEEECCCcc--eeeEEecc----e-eeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeE
Q psy3710 201 ATASYKGTLIRVFDTGSGQ--KLNELRRG----L-CVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLS 273 (424)
Q Consensus 201 ~~~~~d~~~i~iwd~~~~~--~~~~~~~~----~-~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 273 (424)
.+.+.|+. |+.|++.+.. ++..+.+. + ..-+.+|++..++ +|+.|...++|.+.+.+.+...+.+|...|+
T Consensus 287 ~AsCtD~s-Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~-SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt 364 (720)
T KOG0321|consen 287 FASCTDNS-IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL-SGSSDEQAYIWVVSSPEAPPALLLGHTREVT 364 (720)
T ss_pred EEEecCCc-EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe-ccCCCcceeeeeecCccCChhhhhCcceEEE
Confidence 88888999 9999998653 33344333 2 2235567766655 5999999999999999988888899999999
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEEECCCCc
Q psy3710 274 CIALNQT-GTRLATASYKGTLIRVFDTGSGQ 303 (424)
Q Consensus 274 ~~~~~~~-~~~l~~~~~d~~~i~iwd~~~~~ 303 (424)
+++|.|. -.-+++++.|.+ +++|++..+-
T Consensus 365 ~V~w~pS~~t~v~TcSdD~~-~kiW~l~~~l 394 (720)
T KOG0321|consen 365 TVRWLPSATTPVATCSDDFR-VKIWRLSNGL 394 (720)
T ss_pred EEeeccccCCCceeeccCcc-eEEEeccCch
Confidence 9999883 345777799999 9999997653
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-22 Score=170.73 Aligned_cols=185 Identities=18% Similarity=0.201 Sum_probs=133.7
Q ss_pred CeEEEEEcc-CCCEEEEEecCCcEEEEEECCCcc-------eeeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeC
Q psy3710 187 PLSCIALNQ-TGTRLATASYKGTLIRVFDTGSGQ-------KLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDL 255 (424)
Q Consensus 187 ~v~~~~~~~-~~~~l~~~~~d~~~i~iwd~~~~~-------~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~ 255 (424)
.|+.+.|.| |...|+.++.||. |++|.+..+. +...+..+ ++.+.|+|-...++++++.|.+|++||+
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~-i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQ-INLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred eeeecccCCCChHHeeecccCce-EEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 477888888 6678999999999 9999987652 23334433 7888999998888889999999999999
Q ss_pred CCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceee--------------eeccCCcEEEEEeCC
Q psy3710 256 ADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN--------------ELRRDSSYLCVSSDH 321 (424)
Q Consensus 256 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~--------------~~~~~~~~l~~~~~d 321 (424)
.+.+. ...+.+|.+.|.+++|||+|+.+|+.+.||+ |++|+.++++... .|.-+|+++++.+.|
T Consensus 708 ~~~~~-~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 708 ANAKL-YSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred hhhhh-hheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 98774 4556799999999999999999999999999 9999998865422 244577777766654
Q ss_pred ----CcEEEEEcccccc--ccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeE-EEEeccCcEEEEEec
Q psy3710 322 ----GTVHVFSVDEAQK--INKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSI-IVICADGSYYKFMFN 394 (424)
Q Consensus 322 ----~~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~~~~dg~v~~~~~~ 394 (424)
..|.+||..+-.. +... .....| .+..-.+.+|.+.| ++|-.|..|++|++-
T Consensus 786 k~SeRQv~~Y~Aq~l~~~pl~t~----~lDvap-----------------s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 786 KSSERQVQMYDAQTLDLRPLYTQ----VLDVAP-----------------SPLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred ccchhhhhhhhhhhccCCcceee----eecccC-----------------ccccccccCCCceEEEecCCCceEEEEEec
Confidence 4566777655221 1100 000000 11122355676655 566669999999986
Q ss_pred C
Q psy3710 395 S 395 (424)
Q Consensus 395 ~ 395 (424)
.
T Consensus 845 ~ 845 (1012)
T KOG1445|consen 845 Y 845 (1012)
T ss_pred C
Confidence 4
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-22 Score=166.77 Aligned_cols=284 Identities=13% Similarity=0.109 Sum_probs=202.1
Q ss_pred ccccCCceEEEEECCCC--CeeEeecCCe-EEEEeCCcCcc----cccccccCCCeeeEEEeccCc-eEEEEeCCcCCCc
Q psy3710 6 SSTYKNGLLYAGFNQDQ--GCFACGMEDG-FRIYNCDPLKE----KERQDFTDGGLGHVEMLFRCN-YLALVGGGTHPKY 77 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g--~~la~g~~~~-i~iw~~~~~~~----~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~~~~ 77 (424)
..-|.++|++++|+|.. +.+|+|...| |-+||+.+.+. +.....|.++|..+.|+|.+. .+++.+
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS------- 254 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS------- 254 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec-------
Confidence 34588999999999976 5777888888 99999953332 334556889999999999774 444455
Q ss_pred CCCeEEEEECCCCcEEEEEe---ecCCeEEEEecCCceEE-Ee--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecC
Q psy3710 78 PNNRVMIWDDLKKQVVICLE---FNAPVKGVRLRRDKIVV-VL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNS 151 (424)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~-~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (424)
.||+|++-|++++.....+. .......+.|+.+...+ +. =|...+||.+..+.....+..|.. .++.++++|
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k--KI~sv~~NP 332 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK--KITSVALNP 332 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc--ccceeecCC
Confidence 58999999997664333222 23345667777655333 33 358899999866666777777775 588999999
Q ss_pred CCCeEEEeeccCCeEEEEeCCCCCC---CCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECC----CcceeeEE
Q psy3710 152 NNSLLAFPGRKSGHVHLVDLADPER---PPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG----SGQKLNEL 224 (424)
Q Consensus 152 ~~~~l~~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~----~~~~~~~~ 224 (424)
...+++++++.|++.+|||++.-.. +......|...|.+..|+|.+..|++.+.|.. |+|||.. .-.+..++
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~sa~~~p~~~I 411 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCISAKDEPLGTI 411 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccccccCCcccee
Confidence 8887777799999999999986422 23455689999999999999888999999999 9999983 33444444
Q ss_pred ecc--------eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEE-EEEcCCCCEEEEEeCCCcEEE
Q psy3710 225 RRG--------LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSC-IALNQTGTRLATASYKGTLIR 295 (424)
Q Consensus 225 ~~~--------~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~~i~ 295 (424)
... ..-..|.|+...+++ |..-..|-+||-..++............|.+ .+|+|-+..+++|+..+..|.
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~v-g~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVV-GRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIY 490 (498)
T ss_pred eccCcccccccchhheeCCCccEEEE-eccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEE
Confidence 422 122467886555554 8888899999988766332222222334444 479998886666665443277
Q ss_pred EEECC
Q psy3710 296 VFDTG 300 (424)
Q Consensus 296 iwd~~ 300 (424)
||--+
T Consensus 491 vft~k 495 (498)
T KOG4328|consen 491 VFTNK 495 (498)
T ss_pred EEecC
Confidence 77544
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=9e-22 Score=169.30 Aligned_cols=309 Identities=16% Similarity=0.153 Sum_probs=218.7
Q ss_pred ccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCc--eEEEe--eccEEE
Q psy3710 47 QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDK--IVVVL--EGLIKV 122 (424)
Q Consensus 47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~--~~~i~v 122 (424)
+.+|.+.+.+++..|.+.+|++.+ .||+|+||.+.+|++++++.+.+.|.+++|+|.. .+++. +..+.+
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGs-------dDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGS-------DDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecC-------CCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEE
Confidence 456899999999999999998777 6999999999999999999999999999999876 23332 555555
Q ss_pred EeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEe---eccCCeEEEEeCCCC---CCCCcccccccCCeEEEEEccC
Q psy3710 123 YTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFP---GRKSGHVHLVDLADP---ERPPLDIAAHEAPLSCIALNQT 196 (424)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~ 196 (424)
.+.. -+..+..... ...++.. ...++.+..|.-... ..-+.....|...|..+.|+..
T Consensus 469 vnp~-~G~~~e~~~t---------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk 532 (733)
T KOG0650|consen 469 VNPI-FGDRLEVGPT---------------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK 532 (733)
T ss_pred eCcc-ccchhhhcch---------------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence 5542 2211111100 1111110 234567778875532 1223455678999999999999
Q ss_pred CCEEEEEecC---CcEEEEEECCCcceeeEE---ecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCC
Q psy3710 197 GTRLATASYK---GTLIRVFDTGSGQKLNEL---RRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEA 270 (424)
Q Consensus 197 ~~~l~~~~~d---~~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 270 (424)
|.||++...+ .. |.|.++...+....| .+.+..+.|+|...++++ .....|+|||+.... .++.+.....
T Consensus 533 GDYlatV~~~~~~~~-VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfV--aTq~~vRiYdL~kqe-lvKkL~tg~k 608 (733)
T KOG0650|consen 533 GDYLATVMPDSGNKS-VLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFV--ATQRSVRIYDLSKQE-LVKKLLTGSK 608 (733)
T ss_pred CceEEEeccCCCcce-EEEEecccccccCchhhcCCceeEEEecCCCceEEE--EeccceEEEehhHHH-HHHHHhcCCe
Confidence 9999998664 34 889998766554444 345788899999999987 346789999998744 3445556677
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCc-eeee------------eccCCcEEEEEeCCCcEEEEEccccccccc
Q psy3710 271 PLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ-KLNE------------LRRDSSYLCVSSDHGTVHVFSVDEAQKINK 337 (424)
Q Consensus 271 ~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~-~~~~------------~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 337 (424)
.|..++.+|.|..|+.++.|+. +..+|+.-+. ..++ |.+.-.++++|+.||++.||.-.-..-+.+
T Consensus 609 wiS~msihp~GDnli~gs~d~k-~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~q 687 (733)
T KOG0650|consen 609 WISSMSIHPNGDNLILGSYDKK-MCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQ 687 (733)
T ss_pred eeeeeeecCCCCeEEEecCCCe-eEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhc
Confidence 8999999999999999999999 9999997553 2222 334556899999999999987543322222
Q ss_pred cccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEE
Q psy3710 338 QSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFM 392 (424)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~ 392 (424)
.+.+-.+..++.+ .......|..+.|+|...+|++++.||+|++|.
T Consensus 688 npliVPlK~L~gH---------~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 688 NPLIVPLKRLRGH---------EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred CCceEeeeeccCc---------eeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 2222111111110 111234477889999999999999999999983
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-22 Score=168.54 Aligned_cols=258 Identities=19% Similarity=0.202 Sum_probs=197.0
Q ss_pred ceEEEEECCCCCeeEeec--CCe-EEEEeCCcCcc-cccccc-cCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEE
Q psy3710 12 GLLYAGFNQDQGCFACGM--EDG-FRIYNCDPLKE-KERQDF-TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWD 86 (424)
Q Consensus 12 ~V~~~~~s~~g~~la~g~--~~~-i~iw~~~~~~~-~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd 86 (424)
.+.++.|+.... |++++ .+. +++|.-..... +..... ....-.|++.....-++++.+ ..+.|+|||
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG-------~~~~Vkiwd 107 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGG-------QSGCVKIWD 107 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccC-------cCceeeehh
Confidence 488999987764 44443 333 88887432211 111111 111233344444444444444 369999999
Q ss_pred CCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeecc
Q psy3710 87 DLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRK 162 (424)
Q Consensus 87 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (424)
++...+.+.++ |...|.++.++....++|+ .|.|.|..+. ++.....+....+ ..+.-+.+++..+.++.+++.
T Consensus 108 l~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~-t~~~tt~f~~~sg-qsvRll~ys~skr~lL~~asd 185 (673)
T KOG4378|consen 108 LRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTK-TKQKTTTFTIDSG-QSVRLLRYSPSKRFLLSIASD 185 (673)
T ss_pred hHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecc-cCccccceecCCC-CeEEEeecccccceeeEeecc
Confidence 99777777777 8999999999999988887 7899999986 6666666654432 335678899999998888999
Q ss_pred CCeEEEEeCCCCCCCCcccccccCCeEEEEEccC-CCEEEEEecCCcEEEEEECCCcceeeEE--ecceeeeeecCCCCe
Q psy3710 163 SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT-GTRLATASYKGTLIRVFDTGSGQKLNEL--RRGLCVLCPNSNNSL 239 (424)
Q Consensus 163 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~ 239 (424)
+|.|.+||+............|..+...|+|+|. ..+|++.+.|+. |.+||++..+....+ ..+...++|.++|.+
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIYDIRSQASTDRLTYSHPLSTVAFSECGTY 264 (673)
T ss_pred CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEEeecccccccceeeecCCcceeeecCCceE
Confidence 9999999999874455567789999999999995 467889999999 999999977666554 456888999999988
Q ss_pred EEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCC
Q psy3710 240 LAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTG 281 (424)
Q Consensus 240 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 281 (424)
+++ |+..|.|..||++..+.++..+..|...|++++|-|..
T Consensus 265 L~a-G~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 265 LCA-GNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEe-ecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 887 99999999999999999999999999999999998764
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=162.97 Aligned_cols=286 Identities=20% Similarity=0.273 Sum_probs=205.8
Q ss_pred cccccccccCCCeeeEEEeccCc-eEEEEeCCcCCCcCCCeEEEEECCCCc----EEEEEe-ecCCeEEEEecCCc--eE
Q psy3710 42 KEKERQDFTDGGLGHVEMLFRCN-YLALVGGGTHPKYPNNRVMIWDDLKKQ----VVICLE-FNAPVKGVRLRRDK--IV 113 (424)
Q Consensus 42 ~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~~~~~d~~i~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~~--~~ 113 (424)
........+.+.|++++|.|..+ .++.+|. .-|+|-+||+.+.+ .+..+. |..+|.++.|+|.. .+
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~Gd------K~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGD------KGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEcc------CCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 33334455789999999999988 5555553 36999999995322 233333 78899999999875 33
Q ss_pred E-Ee-eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEE
Q psy3710 114 V-VL-EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCI 191 (424)
Q Consensus 114 ~-~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 191 (424)
+ .+ ||+|++-|++ .......+.........+.+.++.+...+++ +..=|...+||+++++.....+.-|...|.++
T Consensus 251 ~ssSyDGtiR~~D~~-~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~-~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv 328 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFE-GNISEEVLSLDTDNIWFSSLDFSAESRSVLF-GDNVGNFNVIDLRTDGSEYENLRLHKKKITSV 328 (498)
T ss_pred eeeccCceeeeeeec-chhhHHHhhcCccceeeeeccccCCCccEEE-eecccceEEEEeecCCccchhhhhhhccccee
Confidence 3 33 9999999996 4333333333344456777888888888887 88878999999999877777888899999999
Q ss_pred EEccC-CCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCC
Q psy3710 192 ALNQT-GTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEA 270 (424)
Q Consensus 192 ~~~~~-~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 270 (424)
+++|. ..+|++++.|++ .+|||++.-..... +......|..
T Consensus 329 ~~NP~~p~~laT~s~D~T-~kIWD~R~l~~K~s-------------------------------------p~lst~~Hrr 370 (498)
T KOG4328|consen 329 ALNPVCPWFLATASLDQT-AKIWDLRQLRGKAS-------------------------------------PFLSTLPHRR 370 (498)
T ss_pred ecCCCCchheeecccCcc-eeeeehhhhcCCCC-------------------------------------cceecccccc
Confidence 99995 467899999999 99999986432211 1111227999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEECC----CCceee-----------------eeccCCcEEEEEeCCCcEEEEEc
Q psy3710 271 PLSCIALNQTGTRLATASYKGTLIRVFDTG----SGQKLN-----------------ELRRDSSYLCVSSDHGTVHVFSV 329 (424)
Q Consensus 271 ~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~----~~~~~~-----------------~~~~~~~~l~~~~~d~~i~iw~~ 329 (424)
.|.+..|||.+-.|++.+.|.. |+|||.. ...++. .|.|+..++++|..-..|-|+|-
T Consensus 371 sV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 371 SVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred eeeeeEEcCCCCceEeeccCCc-eEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence 9999999998878999999999 9999984 211111 35688999999999999999999
Q ss_pred cccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeE-EEEeccCcEEEEEec
Q psy3710 330 DEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSI-IVICADGSYYKFMFN 394 (424)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~~~~dg~v~~~~~~ 394 (424)
..++.+..+..-.. ..-.....|+|-+..+ +-++.-|.|++|.-.
T Consensus 450 ~~~q~v~el~~P~~--------------------~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 450 NGGQMVCELHDPES--------------------STIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred CCCEEeeeccCccc--------------------cccccceeecccccceeccCCccceEEEEecC
Confidence 88775543211000 0112245799977744 445557899998753
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-19 Score=161.29 Aligned_cols=354 Identities=20% Similarity=0.330 Sum_probs=258.7
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCc-ccccccc-cCCCeeeEEE-eccCceEEEEeCCcCCCcCCCe
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLK-EKERQDF-TDGGLGHVEM-LFRCNYLALVGGGTHPKYPNNR 81 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~-~~~~~~~-~~~~i~~~~~-~~~~~~l~~~~~~~~~~~~d~~ 81 (424)
...|...|.++.|.+.+..++.++.++ +.+|+..... ....... +...+..+.. .+++...+..... .|+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~ 135 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS-----LDGT 135 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCC-----CCcc
Confidence 568999999999999999999888666 9999988775 3333333 2235666666 6666633343322 3899
Q ss_pred EEEEECCC-CcEEEEEe-ecCCeEEEEecCCceEEEe----eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCe
Q psy3710 82 VMIWDDLK-KQVVICLE-FNAPVKGVRLRRDKIVVVL----EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSL 155 (424)
Q Consensus 82 i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~----~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (424)
+.+|+... ......+. |...|..+.|+|++..++. ++.+++|+.. ....+..+..|. ..+..+.++|++..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~v~~~~~~~~~~~ 212 (466)
T COG2319 136 VKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR-TGKPLSTLAGHT--DPVSSLAFSPDGGL 212 (466)
T ss_pred EEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC-CCceEEeeccCC--CceEEEEEcCCcce
Confidence 99999987 56666666 8899999999999965543 7899999996 566777777655 44778888899985
Q ss_pred EEEeeccCCeEEEEeCCCCCCCCc-ccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcce-eeEEe---cceee
Q psy3710 156 LAFPGRKSGHVHLVDLADPERPPL-DIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK-LNELR---RGLCV 230 (424)
Q Consensus 156 l~~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~-~~~~~---~~~~~ 230 (424)
++++++.|+.|++||...+ .... .+..|.... ...|+|++..+++++.|+. +++|+++.... ...+. ..+..
T Consensus 213 ~~~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 289 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTG-KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSSSSLLRTLSGHSSSVLS 289 (466)
T ss_pred EEEEecCCCcEEEEECCCC-cEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCCCcEEEEEecCCccEEE
Confidence 5553699999999988854 4444 577887775 4489999989999999999 99999987665 44442 33666
Q ss_pred eeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeee-ccCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEECCCCceeee-
Q psy3710 231 LCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDI-AAHEAPLSCIALNQTGTRLATA-SYKGTLIRVFDTGSGQKLNE- 307 (424)
Q Consensus 231 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~~d~~~i~iwd~~~~~~~~~- 307 (424)
+.+.|.+..++. ++.|+.+.+||........... ..|...+..+.|.+++..++.+ ..|+. +++|+.........
T Consensus 290 ~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~ 367 (466)
T COG2319 290 VAFSPDGKLLAS-GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT-IRLWDLRTGKPLKTL 367 (466)
T ss_pred EEECCCCCEEEE-eeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCc-EEeeecCCCceeEEe
Confidence 788887777777 7777889999888766333222 4677789999994343566665 67777 99999987762222
Q ss_pred ----------eccCCcEEEE-EeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCC
Q psy3710 308 ----------LRRDSSYLCV-SSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADS 376 (424)
Q Consensus 308 ----------~~~~~~~l~~-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 376 (424)
+.+ ...... +..++.+.+|+.............. ..+..+.+++++
T Consensus 368 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~ 424 (466)
T COG2319 368 EGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT----------------------SRVTSLDFSPDG 424 (466)
T ss_pred cCCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCC----------------------CcEEEEEECCCC
Confidence 223 223333 6788999999998865543322110 356678899999
Q ss_pred CeEEEEeccCcEEEEEecC
Q psy3710 377 NSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 377 ~~l~~~~~dg~v~~~~~~~ 395 (424)
.+++.++.++.+++|+...
T Consensus 425 ~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 425 KSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cEEEEecCCCcEEEEeccC
Confidence 9999999999999999974
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=183.40 Aligned_cols=206 Identities=13% Similarity=0.158 Sum_probs=182.8
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEE
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMI 84 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 84 (424)
...|...|.|+..-..++.+++|+.+. +-+|.+.....+..+..|..+|.++.|.++...++..+ .+|+|++
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaags-------asgtiK~ 96 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGS-------ASGTIKV 96 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccc-------cCCceee
Confidence 346888999999977889999999998 88999887777777888999999999999998888777 5899999
Q ss_pred EECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEee
Q psy3710 85 WDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPG 160 (424)
Q Consensus 85 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (424)
||++.++.++++. |...+..+.|+|-+.+.+. |..+++||++ ...+.+.+.+|. ..+..+.++|+|++++. |
T Consensus 97 wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R-k~Gc~~~~~s~~--~vv~~l~lsP~Gr~v~~-g 172 (825)
T KOG0267|consen 97 WDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR-KKGCSHTYKSHT--RVVDVLRLSPDGRWVAS-G 172 (825)
T ss_pred eehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhh-ccCceeeecCCc--ceeEEEeecCCCceeec-c
Confidence 9999999999888 8999999999999999965 8999999997 667888888755 45778899999999998 9
Q ss_pred ccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEE
Q psy3710 161 RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNEL 224 (424)
Q Consensus 161 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~ 224 (424)
++|..+++||+..+ +....|..|.+.+..+.|+|..-.+++|+.|++ +++||+++.+.+...
T Consensus 173 ~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dletfe~I~s~ 234 (825)
T KOG0267|consen 173 GEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLETFEVISSG 234 (825)
T ss_pred CCcceeeeeccccc-ccccccccccccccccccCchhhhhccCCCCce-eeeeccceeEEeecc
Confidence 99999999999987 888899999999999999999889999999999 999999987665443
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=168.09 Aligned_cols=269 Identities=13% Similarity=0.109 Sum_probs=181.0
Q ss_pred CceEEEEeCCcCCCcCCCeEEEEECCCCcEE------EE-EeecCCeEEEEecCCceEEEe---eccEEEEeecCCCcee
Q psy3710 63 CNYLALVGGGTHPKYPNNRVMIWDDLKKQVV------IC-LEFNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQL 132 (424)
Q Consensus 63 ~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~------~~-~~~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~ 132 (424)
...++.++. .||.|.++|.+..... +. +.|.+.|..+.|-|....+++ |.++++||++ ..+..
T Consensus 63 ~eHiLavad------E~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk-~s~l~ 135 (720)
T KOG0321|consen 63 KEHILAVAD------EDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK-TSRLV 135 (720)
T ss_pred ccceEEEec------CCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeec-cceee
Confidence 344555543 4899999997643322 22 238899999999995555554 8899999997 55555
Q ss_pred EE--EeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCC--------------------------CCcccccc
Q psy3710 133 HV--FETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER--------------------------PPLDIAAH 184 (424)
Q Consensus 133 ~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~--------------------------~~~~~~~~ 184 (424)
.. +.+|. ..+-+++|.|.+..++++|+.||.|.|||++-... .+....++
T Consensus 136 G~~~~~GH~--~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 136 GGRLNLGHT--GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred cceeecccc--cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 54 66666 44777888998888888899999999999974320 01111233
Q ss_pred cCCeEE---EEEccCCCEEEEEec-CCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCC
Q psy3710 185 EAPLSC---IALNQTGTRLATASY-KGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER 260 (424)
Q Consensus 185 ~~~v~~---~~~~~~~~~l~~~~~-d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~ 260 (424)
...|.+ +.+..|...|++++. |+. |++||+++..........
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~-iKVWDLRk~~~~~r~ep~--------------------------------- 259 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADST-IKVWDLRKNYTAYRQEPR--------------------------------- 259 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcc-eEEEeecccccccccCCC---------------------------------
Confidence 334444 444455566666665 666 777776655443322110
Q ss_pred CCeeeccC---CCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCc----------eee------eeccCCcEEEEEeCC
Q psy3710 261 PPLDIAAH---EAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ----------KLN------ELRRDSSYLCVSSDH 321 (424)
Q Consensus 261 ~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~----------~~~------~~~~~~~~l~~~~~d 321 (424)
....+..| .-.+.++..+..|.+|++.+.|+. |..|++.+-. +.. .++||+.++++|+.|
T Consensus 260 ~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s-Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd 338 (720)
T KOG0321|consen 260 GSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS-IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSD 338 (720)
T ss_pred cccCccCcccceeeeEEEEecCCCCeEEEEecCCc-EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCC
Confidence 01111122 345778888888899988888999 9999997532 222 357999999999999
Q ss_pred CcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecC-CCeEEEEeccCcEEEEEecCC
Q psy3710 322 GTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGAD-SNSIIVICADGSYYKFMFNSK 396 (424)
Q Consensus 322 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~v~~~~~~~~ 396 (424)
...++|.+.+.+.-.. ....|.-.++.++|.|. -.-++++++|-.+++|++..+
T Consensus 339 ~~ayiw~vs~~e~~~~---------------------~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 339 EQAYIWVVSSPEAPPA---------------------LLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cceeeeeecCccCChh---------------------hhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 9999999998553111 12234556788899873 345777899999999999754
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.6e-21 Score=151.09 Aligned_cols=263 Identities=16% Similarity=0.229 Sum_probs=180.3
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCccc----ccccccCCCeeeEEEecc--CceEEEEeCCcCCCcC
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEK----ERQDFTDGGLGHVEMLFR--CNYLALVGGGTHPKYP 78 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~----~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~~~~~ 78 (424)
..+|.+-|+++.|.+.|+++|+++.|+ ++|||.+..... ..-..|.+.|-.+.|.+. |..+|+++ .
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS-------~ 81 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS-------Y 81 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe-------c
Confidence 457999999999999999999998888 999996544432 223458999999999876 47777777 6
Q ss_pred CCeEEEEECCC------C-cE--EEEEe-ecCCeEEEEecCCc--eEEEe---eccEEEEeecCCC-----ceeEEEe--
Q psy3710 79 NNRVMIWDDLK------K-QV--VICLE-FNAPVKGVRLRRDK--IVVVL---EGLIKVYTFIQCP-----QQLHVFE-- 136 (424)
Q Consensus 79 d~~i~iwd~~~------~-~~--~~~~~-~~~~v~~~~~~~~~--~~~~~---~~~i~v~~~~~~~-----~~~~~~~-- 136 (424)
|+++.||.-.. + +- ..++. ....|+.+.|.|.. ..+++ ||.++||+.-+.. .+.+++.
T Consensus 82 Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~ 161 (361)
T KOG2445|consen 82 DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV 161 (361)
T ss_pred CCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence 99999997521 1 11 12233 46789999999874 45554 9999999874222 1222222
Q ss_pred ---eCCCCCeeEEEeecCC---CCeEEEeeccC-----CeEEEEeCCCCC---CCCcccccccCCeEEEEEccCC----C
Q psy3710 137 ---TNPNPKGLCVLCPNSN---NSLLAFPGRKS-----GHVHLVDLADPE---RPPLDIAAHEAPLSCIALNQTG----T 198 (424)
Q Consensus 137 ---~~~~~~~~~~~~~~~~---~~~l~~~~~~d-----g~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~----~ 198 (424)
.........|+.|+|. ..+|++ |+.+ +.+.||...... ..+.++.+|..+|++++|.|+- .
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAv-gs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~ 240 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAV-GSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYH 240 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEE-EcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCcee
Confidence 0111223556777753 356776 6655 588899877653 2344677999999999999963 4
Q ss_pred EEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEc
Q psy3710 199 RLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALN 278 (424)
Q Consensus 199 ~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 278 (424)
.|++++.|| |+||.++...... ..... .. +..-+. +++ ..+..+..|.++|..+.|+
T Consensus 241 ~lAvA~kDg--v~I~~v~~~~s~i-~~ee~----~~---------~~~~~~---l~v----~~vs~~~~H~~~VWrv~wN 297 (361)
T KOG2445|consen 241 LLAVATKDG--VRIFKVKVARSAI-EEEEV----LA---------PDLMTD---LPV----EKVSELDDHNGEVWRVRWN 297 (361)
T ss_pred eEEEeecCc--EEEEEEeeccchh-hhhcc----cC---------CCCccc---cce----EEeeeccCCCCceEEEEEe
Confidence 789999999 8999986432111 10000 00 000000 010 1234566899999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEECC
Q psy3710 279 QTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 279 ~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
-.|..|++.+.||. ||+|...
T Consensus 298 mtGtiLsStGdDG~-VRLWkan 318 (361)
T KOG2445|consen 298 MTGTILSSTGDDGC-VRLWKAN 318 (361)
T ss_pred eeeeEEeecCCCce-eeehhhh
Confidence 99999999999999 9999764
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-21 Score=156.50 Aligned_cols=284 Identities=12% Similarity=0.109 Sum_probs=213.3
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcC------cccccccc-cCCCeeeEEEeccCceEEEEeCCcCCCc
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPL------KEKERQDF-TDGGLGHVEMLFRCNYLALVGGGTHPKY 77 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~------~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~~~~ 77 (424)
+.+|.+.|+++.||.++++||+|+++. +++|+++.. +.+..... |...|.+++|...+..+.+.+
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~------- 124 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE------- 124 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC-------
Confidence 679999999999999999999999999 999997543 33333333 568898999887666665444
Q ss_pred CCCeEEEEECCCCcEEEEEeecC---CeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecC
Q psy3710 78 PNNRVMIWDDLKKQVVICLEFNA---PVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNS 151 (424)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (424)
.+++|.+.|+++.+.+..+.+.. .|+.+..+|....+++ ++.|.+||.+........+-....+.......|+|
T Consensus 125 ~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence 58999999999999999888654 8999999997655544 89999999985554555554445556677788999
Q ss_pred CCCeEEEeeccCCeEEEEeCCCCCCCCcccccc------cCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcc-eeeEE
Q psy3710 152 NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAH------EAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ-KLNEL 224 (424)
Q Consensus 152 ~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~-~~~~~ 224 (424)
....|+.+.+..+-+.+||.+....++....+. ...-.++.|+|+|..+++.-.... -.+||+.+.+ .+.++
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~-P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKC-PLYFDFISQRCFVLKS 283 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCC-CEEeeeecccceeEec
Confidence 887777669999999999999865554433322 222357889999999988777666 6788887643 33444
Q ss_pred ecc---------eeeeeecCCCCeEEEEeecCCeEEEEeCCCCC----------------------CCCeeeccCCCCeE
Q psy3710 225 RRG---------LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE----------------------RPPLDIAAHEAPLS 273 (424)
Q Consensus 225 ~~~---------~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~----------------------~~~~~~~~~~~~v~ 273 (424)
... +..++|..+ +-+++|+.+-.|++|.+.... .....+++|.+-++
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~N 361 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPN 361 (609)
T ss_pred cCCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccc
Confidence 311 233444433 337779999999999986421 12345789999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 274 CIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 274 ~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
.+.|+|...+|++.+-... +++|...
T Consensus 362 QVRF~~H~~~l~SSGVE~~-~KlWS~~ 387 (609)
T KOG4227|consen 362 QVRFSQHNNLLVSSGVENS-FKLWSDH 387 (609)
T ss_pred ceeecCCcceEeccchhhh-eeccccc
Confidence 9999999999999999999 9999764
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-23 Score=182.17 Aligned_cols=224 Identities=14% Similarity=0.265 Sum_probs=175.3
Q ss_pred CCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ec
Q psy3710 22 QGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FN 99 (424)
Q Consensus 22 g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~ 99 (424)
+.+++.+.... +++|+.... ..|...+.++..-..+..+++.+ .|..+-+|.......+..+. |.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~~------~~hsaav~~lk~~~s~r~~~~Gg-------~~~k~~L~~i~kp~~i~S~~~he 70 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTREF------VAHSAAVGCLKIRKSSRSLVTGG-------EDEKVNLWAIGKPNAITSLTGHE 70 (825)
T ss_pred ccccceeeeeeccccccchhh------hhhhhhhceeeeeccceeeccCC-------CceeeccccccCCchhheeeccC
Confidence 33444444444 788875432 23555666666644445555444 57889999987777777766 89
Q ss_pred CCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCC
Q psy3710 100 APVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER 176 (424)
Q Consensus 100 ~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~ 176 (424)
.+|.++.|+++..+++. +|+|++||+. ..+.++++.+|..+ ++.+.|+|-+.+.+. |+.|+.+.+||.+.. .
T Consensus 71 spIeSl~f~~~E~LlaagsasgtiK~wDle-eAk~vrtLtgh~~~--~~sv~f~P~~~~~a~-gStdtd~~iwD~Rk~-G 145 (825)
T KOG0267|consen 71 SPIESLTFDTSERLLAAGSASGTIKVWDLE-EAKIVRTLTGHLLN--ITSVDFHPYGEFFAS-GSTDTDLKIWDIRKK-G 145 (825)
T ss_pred CcceeeecCcchhhhcccccCCceeeeehh-hhhhhhhhhccccC--cceeeeccceEEecc-ccccccceehhhhcc-C
Confidence 99999999999877775 8999999997 77888888888754 788899999999987 999999999999965 7
Q ss_pred CCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCC
Q psy3710 177 PPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLA 256 (424)
Q Consensus 177 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~ 256 (424)
+...+.+|...|..+.|+|+|++++.++.|.. +++||...|+.+.+|+
T Consensus 146 c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t-vki~d~~agk~~~ef~------------------------------- 193 (825)
T KOG0267|consen 146 CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT-VKIWDLTAGKLSKEFK------------------------------- 193 (825)
T ss_pred ceeeecCCcceeEEEeecCCCceeeccCCcce-eeeecccccccccccc-------------------------------
Confidence 88899999999999999999999999999999 9999999888877765
Q ss_pred CCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceee
Q psy3710 257 DPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN 306 (424)
Q Consensus 257 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~ 306 (424)
.|...+..+.|+|..-++++|+.|++ +++||+++.+.+.
T Consensus 194 ----------~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dletfe~I~ 232 (825)
T KOG0267|consen 194 ----------SHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLETFEVIS 232 (825)
T ss_pred ----------cccccccccccCchhhhhccCCCCce-eeeeccceeEEee
Confidence 56666666667776666777777777 7777776655544
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.6e-21 Score=152.06 Aligned_cols=272 Identities=14% Similarity=0.232 Sum_probs=197.8
Q ss_pred ecCCeEEEEecC-----CceEEEe--eccEEEEeecCCC--ceeEEEeeCCCCCeeEEEeec--C--CCCeEEEeeccCC
Q psy3710 98 FNAPVKGVRLRR-----DKIVVVL--EGLIKVYTFIQCP--QQLHVFETNPNPKGLCVLCPN--S--NNSLLAFPGRKSG 164 (424)
Q Consensus 98 ~~~~v~~~~~~~-----~~~~~~~--~~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~--~~~~l~~~~~~dg 164 (424)
|+.++..++|++ +-..+++ .+.+.+|....++ +.++.+...+.+......+|+ . .+.++++ |+.-|
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~-~G~~G 115 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA-GGYLG 115 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe-eccee
Confidence 567899999973 2345554 6788999885444 445555444333334444443 2 2456776 88999
Q ss_pred eEEEEeCCCCCCCCcccccccCCeEEEEEccCC-CEEEEEecCCcEEEEEECCCcceeeEEec------ceeeeeecCCC
Q psy3710 165 HVHLVDLADPERPPLDIAAHEAPLSCIALNQTG-TRLATASYKGTLIRVFDTGSGQKLNELRR------GLCVLCPNSNN 237 (424)
Q Consensus 165 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~ 237 (424)
.|++.|+.++ +....+.+|...|+.+.++|+. ++++++|.|.. |++|++++..++..+.+ ++-++.++.++
T Consensus 116 vIrVid~~~~-~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~s-vRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g 193 (385)
T KOG1034|consen 116 VIRVIDVVSG-QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHS-VRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG 193 (385)
T ss_pred EEEEEecchh-hhccceeccCccchhhhcCCCCCcEEEEecCCce-EEEEeccCCeEEEEecccccccCcEEEEEEcCCC
Confidence 9999999987 7888999999999999999964 68999999999 99999999999988753 36778899999
Q ss_pred CeEEEEeecCCeEEEEeCCCCCCC-----C----------------e------eeccCCCCeEEEEEcCCCCEEEEEeCC
Q psy3710 238 SLLAFPGRKSGHVHLVDLADPERP-----P----------------L------DIAAHEAPLSCIALNQTGTRLATASYK 290 (424)
Q Consensus 238 ~~~~~~~~~dg~i~i~d~~~~~~~-----~----------------~------~~~~~~~~v~~~~~~~~~~~l~~~~~d 290 (424)
..+ ++++.|.+|++|++...+-. . . +..-|...|-|+.|- |+++++-|-+
T Consensus 194 d~i-~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksce 270 (385)
T KOG1034|consen 194 DRI-ASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCE 270 (385)
T ss_pred Cee-eccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccC
Confidence 954 56999999999999843200 0 0 112355666666664 5799999999
Q ss_pred CcEEEEEEC-CCCceee---------------------------eeccCCcEEEEEeCCCcEEEEEccccccccccccce
Q psy3710 291 GTLIRVFDT-GSGQKLN---------------------------ELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLA 342 (424)
Q Consensus 291 ~~~i~iwd~-~~~~~~~---------------------------~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~ 342 (424)
+. |..|.. +-++.+. .+.+-+++||.|...|.+.+||++..++. ..+.+
T Consensus 271 na-I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~-~~ttl- 347 (385)
T KOG1034|consen 271 NA-IVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP-KCTTL- 347 (385)
T ss_pred ce-EEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc-cCceE-
Confidence 99 999988 2222211 13356788999999999999999986543 11111
Q ss_pred eeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 343 SASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
........|...+||.|+..|+..++|++|.-||.-
T Consensus 348 ----------------~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 348 ----------------THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ----------------EeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 111224568889999999999999999999999863
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=150.95 Aligned_cols=282 Identities=16% Similarity=0.223 Sum_probs=204.2
Q ss_pred ccccCCceEEEEECC-----CCCeeEeecCCeEEEEeCCcCcccc---c--ccccCCCeeeEEEeccC---ceEEEEeCC
Q psy3710 6 SSTYKNGLLYAGFNQ-----DQGCFACGMEDGFRIYNCDPLKEKE---R--QDFTDGGLGHVEMLFRC---NYLALVGGG 72 (424)
Q Consensus 6 l~~h~~~V~~~~~s~-----~g~~la~g~~~~i~iw~~~~~~~~~---~--~~~~~~~i~~~~~~~~~---~~l~~~~~~ 72 (424)
+.+|..+|..++|++ +-..+|+.+.+.+.+|++.....+. . -.-+++....++|+.+. +-++.++|.
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence 567899999999985 2367778887789999876543211 1 11256778888998764 334444443
Q ss_pred cCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCc--eEEEe--eccEEEEeecCCCceeEEEeeCC-CCCeeEE
Q psy3710 73 THPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDK--IVVVL--EGLIKVYTFIQCPQQLHVFETNP-NPKGLCV 146 (424)
Q Consensus 73 ~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~--~~~~~--~~~i~v~~~~~~~~~~~~~~~~~-~~~~~~~ 146 (424)
-|.|+|.|+.+++....+. |...|+.+.+.|+. .++.. |..|++|+++ +..++..+.+-. +...+.+
T Consensus 114 ------~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~-~~~Cv~VfGG~egHrdeVLS 186 (385)
T KOG1034|consen 114 ------LGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ-TDVCVAVFGGVEGHRDEVLS 186 (385)
T ss_pred ------eeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc-CCeEEEEecccccccCcEEE
Confidence 6999999999999999888 89999999999987 33333 8999999997 788887765432 3356999
Q ss_pred EeecCCCCeEEEeeccCCeEEEEeCCCCCC--------------------------CCc-ccccccCCeEEEEEccCCCE
Q psy3710 147 LCPNSNNSLLAFPGRKSGHVHLVDLADPER--------------------------PPL-DIAAHEAPLSCIALNQTGTR 199 (424)
Q Consensus 147 ~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~--------------------------~~~-~~~~~~~~v~~~~~~~~~~~ 199 (424)
+.|++++.+|++ ++.|.++++|++...+- +.. +-.-|...|.|+.|- |++
T Consensus 187 vD~~~~gd~i~S-cGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ 263 (385)
T KOG1034|consen 187 VDFSLDGDRIAS-CGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDF 263 (385)
T ss_pred EEEcCCCCeeec-cCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhh
Confidence 999999999998 99999999999983210 000 122466667777775 478
Q ss_pred EEEEecCCcEEEEEEC-CCcce-------------eeEEecc---e--eeeeecCCCCeEEEEeecCCeEEEEeCCCCCC
Q psy3710 200 LATASYKGTLIRVFDT-GSGQK-------------LNELRRG---L--CVLCPNSNNSLLAFPGRKSGHVHLVDLADPER 260 (424)
Q Consensus 200 l~~~~~d~~~i~iwd~-~~~~~-------------~~~~~~~---~--~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~ 260 (424)
+++-+-++. |..|.. +-++. +.+++-+ + ...++.+-...+++ |...|.+++||++..+.
T Consensus 264 ilSkscena-I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~-gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 264 ILSKSCENA-IVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL-GNQSGKVYVWDLDNNEP 341 (385)
T ss_pred eeecccCce-EEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh-ccCCCcEEEEECCCCCC
Confidence 999888999 999987 22222 1222222 1 22355565666655 99999999999998775
Q ss_pred CCe-eec--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 261 PPL-DIA--AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 261 ~~~-~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
+.. ++. .....|...+|+.||..|+..+.|++ |.-||..
T Consensus 342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~-Vwrwdrv 383 (385)
T KOG1034|consen 342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGT-VWRWDRV 383 (385)
T ss_pred ccCceEEeccccceeeeeeecccCcEEEEEeCCCc-EEEEEee
Confidence 332 222 22467899999999999999999999 8888854
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.4e-21 Score=157.68 Aligned_cols=231 Identities=13% Similarity=0.177 Sum_probs=171.9
Q ss_pred CCeeEeecCCe-EEEEeCCcCccc---------------------ccccccCCCeeeEEEeccCceEEEEeCCcCCCcCC
Q psy3710 22 QGCFACGMEDG-FRIYNCDPLKEK---------------------ERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPN 79 (424)
Q Consensus 22 g~~la~g~~~~-i~iw~~~~~~~~---------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d 79 (424)
|+++|.|+-+. |.|||++-...+ .....|...+..+.|...-..++..+ + .|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSg-s-----aD 265 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASG-S-----AD 265 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEec-C-----CC
Confidence 68999999998 999997522110 00123555666666665554443333 2 69
Q ss_pred CeEEEEECCCCcEEEEEe-ecCCeEEEEecCCc-eEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCC
Q psy3710 80 NRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDK-IVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNS 154 (424)
Q Consensus 80 ~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (424)
.+|++||+.+|++...+. |...|.++.|+|.. .++.+ |+++.+.|.+.....-..++.. ..+-.+.|+|...
T Consensus 266 ~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~---g~VEkv~w~~~se 342 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD---GEVEKVAWDPHSE 342 (463)
T ss_pred ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec---cceEEEEecCCCc
Confidence 999999999999999999 79999999999875 33333 9999999998433322233322 2355678888777
Q ss_pred eEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccC-CCEEEEEecCCcEEEEEECCCccee----eEEecc-e
Q psy3710 155 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT-GTRLATASYKGTLIRVFDTGSGQKL----NELRRG-L 228 (424)
Q Consensus 155 ~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd~~~~~~~----~~~~~~-~ 228 (424)
..+.++..||+|+-+|++...+++.++++|.++|.++++++. ..++++++.|+. |++|++....+. +.+..+ .
T Consensus 343 ~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~~~~~v~~~~~~~~rl 421 (463)
T KOG0270|consen 343 NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVDSPKSVKEHSFKLGRL 421 (463)
T ss_pred eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCCCCcccccccccccce
Confidence 766668999999999999988999999999999999999885 457889999999 999998754432 222222 4
Q ss_pred eeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCC
Q psy3710 229 CVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPP 262 (424)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~ 262 (424)
.++++.|+-..+++.|+..+.+++||+.+.....
T Consensus 422 ~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 422 HCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred eecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 5667788888888889999999999998866433
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-20 Score=146.64 Aligned_cols=259 Identities=12% Similarity=0.146 Sum_probs=178.3
Q ss_pred CeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCC--------------cEEEEEeecCCeEEEEec-------CCc
Q psy3710 53 GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKK--------------QVVICLEFNAPVKGVRLR-------RDK 111 (424)
Q Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~--------------~~~~~~~~~~~v~~~~~~-------~~~ 111 (424)
-...+.|+|||..+++.+ .|..+.+|++... .....+.....|...+|- |+.
T Consensus 51 f~kgckWSPDGSciL~~s-------edn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t 123 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLS-------EDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST 123 (406)
T ss_pred hhccceeCCCCceEEeec-------ccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc
Confidence 345588999999999888 6899999997421 111222245667777763 555
Q ss_pred eEEEe---eccEEEEeecCCCceeEEEeeCCC---CCeeEEEeecCCCCeEEEeeccCCeEEEEeCC-CCCC-CCccccc
Q psy3710 112 IVVVL---EGLIKVYTFIQCPQQLHVFETNPN---PKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLA-DPER-PPLDIAA 183 (424)
Q Consensus 112 ~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~-~~~~-~~~~~~~ 183 (424)
.++++ +.-|++||.- +++....+....+ -....+++|+|||..|++ +....|+++|+. .+.. +......
T Consensus 124 ~l~a~ssr~~PIh~wdaf-tG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa--GykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAF-TGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA--GYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred ceeeeccccCceeeeecc-ccccccchhhhhhHHhhhhheeEEecCCCCeEee--cccceEEEeeccCCCCCCcchhhhh
Confidence 55554 8899999996 7777666655433 233568999999999985 677899999994 3321 2222222
Q ss_pred -----ccCCeEEEEEccCC-CEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCC
Q psy3710 184 -----HEAPLSCIALNQTG-TRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLAD 257 (424)
Q Consensus 184 -----~~~~v~~~~~~~~~-~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 257 (424)
..+-|.+++|+|-. +.++.++.... +-|+.-..+.++
T Consensus 201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~-~giy~~~~~~pl------------------------------------ 243 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQR-VGIYNDDGRRPL------------------------------------ 243 (406)
T ss_pred cccccccceeeeeeccCCCCcceeeecccce-eeeEecCCCCce------------------------------------
Confidence 36778899999954 47777777776 777765554443
Q ss_pred CCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCC----------------ceeeeeccCCcEEEEEeCC
Q psy3710 258 PERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG----------------QKLNELRRDSSYLCVSSDH 321 (424)
Q Consensus 258 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~----------------~~~~~~~~~~~~l~~~~~d 321 (424)
..+.+|.+.|+.+.|.++|+.|++|+...-.|..||++.. +....+.|++++|++|+.|
T Consensus 244 -----~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~td 318 (406)
T KOG2919|consen 244 -----QLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTD 318 (406)
T ss_pred -----eeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCC
Confidence 3334788889999999999888888763333889988742 2223456889999999999
Q ss_pred CcEEEEEccc-cccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEecc
Q psy3710 322 GTVHVFSVDE-AQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICAD 385 (424)
Q Consensus 322 ~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 385 (424)
|.|++||+++ +..... +..+...+..++++|--..+++++..
T Consensus 319 G~V~vwdlk~~gn~~sv----------------------~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 319 GSVRVWDLKDLGNEVSV----------------------TGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccEEEEecCCCCCcccc----------------------cccccccccceecCcccceeeeccCc
Confidence 9999999988 332111 12233456678888887777776643
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=146.72 Aligned_cols=270 Identities=13% Similarity=0.090 Sum_probs=188.5
Q ss_pred ccccCCceEEEEECCCC-CeeEeecC----C----eEEEEeCCcCcc---------ccccc-ccCCCeeeEEEeccCceE
Q psy3710 6 SSTYKNGLLYAGFNQDQ-GCFACGME----D----GFRIYNCDPLKE---------KERQD-FTDGGLGHVEMLFRCNYL 66 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g-~~la~g~~----~----~i~iw~~~~~~~---------~~~~~-~~~~~i~~~~~~~~~~~l 66 (424)
+..|.+.|..++-+|-. +.|++... . ++.||.+..... +.... .+-+.+.++.|-|+++.+
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~kl 138 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKL 138 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCee
Confidence 66789999999999966 55555433 1 278999753322 22222 245689999999999999
Q ss_pred EEEeCCcCCCcCCCeEEEEECCCCcE-EEEEe------ecCCeEEEEecC--CceEEEe--eccEEEEeecCCCceeEEE
Q psy3710 67 ALVGGGTHPKYPNNRVMIWDDLKKQV-VICLE------FNAPVKGVRLRR--DKIVVVL--EGLIKVYTFIQCPQQLHVF 135 (424)
Q Consensus 67 ~~~~~~~~~~~~d~~i~iwd~~~~~~-~~~~~------~~~~v~~~~~~~--~~~~~~~--~~~i~v~~~~~~~~~~~~~ 135 (424)
++.. |..|.+|++..+.. +..+. +.....+-+|+| ++..+++ ++++..||++ +......+
T Consensus 139 asm~--------dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~R-T~~~~~sI 209 (370)
T KOG1007|consen 139 ASMD--------DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLR-TMKKNNSI 209 (370)
T ss_pred EEec--------cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEcc-chhhhcch
Confidence 9887 79999999987766 44433 344567778887 5556655 9999999998 65555555
Q ss_pred ee-CCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccC-CCEEEEEecCCcEEEEE
Q psy3710 136 ET-NPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT-GTRLATASYKGTLIRVF 213 (424)
Q Consensus 136 ~~-~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~~i~iw 213 (424)
+. |. ..+..+.|+|+.+.++++++.||.|++||.+..+.++..+.+|...|.++.|+|. .+++++++.|.. |.+|
T Consensus 210 ~dAHg--q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~Ls 286 (370)
T KOG1007|consen 210 EDAHG--QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-VNLS 286 (370)
T ss_pred hhhhc--ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce-eEEE
Confidence 43 33 3478899999999888889999999999999988899999999999999999995 467889999999 9999
Q ss_pred ECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcC-CCCEEEEEeCCCc
Q psy3710 214 DTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ-TGTRLATASYKGT 292 (424)
Q Consensus 214 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~ 292 (424)
...+-....++......-- .+ ..+..=+.=-+.. ..+.++..|...|++++||. |.-.+|+-+.||.
T Consensus 287 ca~svSSE~qi~~~~dese-~e---------~~dseer~kpL~d--g~l~tydehEDSVY~~aWSsadPWiFASLSYDGR 354 (370)
T KOG1007|consen 287 CASSVSSEQQIEFEDDESE-SE---------DEDSEERVKPLQD--GQLETYDEHEDSVYALAWSSADPWIFASLSYDGR 354 (370)
T ss_pred ecccccccccccccccccc-Cc---------chhhHHhcccccc--cccccccccccceEEEeeccCCCeeEEEeccCce
Confidence 8754322222211100000 00 0000000000001 12345568999999999987 5667888999998
Q ss_pred EEEEEECC
Q psy3710 293 LIRVFDTG 300 (424)
Q Consensus 293 ~i~iwd~~ 300 (424)
+.|=.+.
T Consensus 355 -viIs~V~ 361 (370)
T KOG1007|consen 355 -VIISSVP 361 (370)
T ss_pred -EEeecCC
Confidence 7765543
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-21 Score=154.93 Aligned_cols=197 Identities=19% Similarity=0.271 Sum_probs=148.3
Q ss_pred ecCCeEEEEecCCc--eEEEe---eccEEEEeecC---------------CCceeEEEeeCCCCCeeEEEeecCCCC-eE
Q psy3710 98 FNAPVKGVRLRRDK--IVVVL---EGLIKVYTFIQ---------------CPQQLHVFETNPNPKGLCVLCPNSNNS-LL 156 (424)
Q Consensus 98 ~~~~v~~~~~~~~~--~~~~~---~~~i~v~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l 156 (424)
|.+.++.+..++-+ .+.++ .|.|+||++.. ..+++.++.+|... -.+++|||-.. .|
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~E--Gy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGE--GYGLDWSPIKTGRL 227 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcc--ceeeeccccccccc
Confidence 55566666665543 44444 78999999853 13456667777644 55678887322 25
Q ss_pred EEeeccCCeEEEEeCCCCCC--CCcccccccCCeEEEEEccC-CCEEEEEecCCcEEEEEECCCcc---eeeE--Eecce
Q psy3710 157 AFPGRKSGHVHLVDLADPER--PPLDIAAHEAPLSCIALNQT-GTRLATASYKGTLIRVFDTGSGQ---KLNE--LRRGL 228 (424)
Q Consensus 157 ~~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd~~~~~---~~~~--~~~~~ 228 (424)
++ |..-+.|++|...++.- -...+.+|+..|-.++|+|. ...|++||.|++ |+|||++.+. ++.. ....+
T Consensus 228 ls-GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~~~~~~~~kAh~sDV 305 (440)
T KOG0302|consen 228 LS-GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGPKKAAVSTKAHNSDV 305 (440)
T ss_pred cc-CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCCccceeEeeccCCce
Confidence 55 88889999999887521 22356679999999999995 468999999999 9999999883 2222 23458
Q ss_pred eeeeecCCCCeEEEEeecCCeEEEEeCCCCC--CCCeeeccCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEECC
Q psy3710 229 CVLCPNSNNSLLAFPGRKSGHVHLVDLADPE--RPPLDIAAHEAPLSCIALNQT-GTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd~~ 300 (424)
+++.|+.... ++++|++||+++|||++.-+ .++..++-|..+|+++.|+|. ...|++++.|.. |.+||+.
T Consensus 306 NVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q-itiWDls 378 (440)
T KOG0302|consen 306 NVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ-ITIWDLS 378 (440)
T ss_pred eeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCc-EEEEEee
Confidence 8999998888 77789999999999999754 577889999999999999994 456777777877 8888875
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-20 Score=149.61 Aligned_cols=259 Identities=14% Similarity=0.189 Sum_probs=180.9
Q ss_pred CCCeEEEEECCCCcEEEEEe-ecCCeEEEEec----CCceEEEe-eccEEEEeecCCCceeEEEeeCCC-CCeeEEEeec
Q psy3710 78 PNNRVMIWDDLKKQVVICLE-FNAPVKGVRLR----RDKIVVVL-EGLIKVYTFIQCPQQLHVFETNPN-PKGLCVLCPN 150 (424)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~----~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 150 (424)
+.+.|++||..+++.+..++ ++..++.++|. |++.+.++ ||+|++||++... ....+..... +....+++.+
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~-e~a~~~~~~~~~~~f~~ld~n 126 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA-ESARISWTQQSGTPFICLDLN 126 (376)
T ss_pred cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch-hhhheeccCCCCCcceEeecc
Confidence 37999999999999999999 68888888885 44556665 9999999998433 3333322222 2345566666
Q ss_pred CCCCeEEEeecc----CCeEEEEeCCCCCCCCc-ccccccCCeEEEEEcc-CCCEEEEEecCCcEEEEEECCCcceeeEE
Q psy3710 151 SNNSLLAFPGRK----SGHVHLVDLADPERPPL-DIAAHEAPLSCIALNQ-TGTRLATASYKGTLIRVFDTGSGQKLNEL 224 (424)
Q Consensus 151 ~~~~~l~~~~~~----dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~ 224 (424)
-.++.+++ |.+ +-.|.+||++..++++. ....|.+.|+++.|+| +.++|++||.||- |.++|+.....
T Consensus 127 ck~~ii~~-GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL-vnlfD~~~d~E---- 200 (376)
T KOG1188|consen 127 CKKNIIAC-GTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL-VNLFDTKKDNE---- 200 (376)
T ss_pred CcCCeEEe-ccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce-EEeeecCCCcc----
Confidence 56677776 653 67899999998866444 5568999999999999 4579999999999 99999864311
Q ss_pred ecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEECCCCc
Q psy3710 225 RRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTG-TRLATASYKGTLIRVFDTGSGQ 303 (424)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~~i~iwd~~~~~ 303 (424)
+..+...-.|...|.++.|..++ +.|.+-+...+ ..+|+++.+.
T Consensus 201 ----------------------------------eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et-f~~~ele~~~ 245 (376)
T KOG1188|consen 201 ----------------------------------EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET-FAIYELEDGS 245 (376)
T ss_pred ----------------------------------hhhHHHhhcccceeeeeeeecCCcceEEEEEccCc-eeEEEccCCC
Confidence 01112222677889999998876 46888888888 9999999887
Q ss_pred eeeeec------------------------cCCcEEEEEeC-CCcEEEEEccccccccccccceeeeccCccccCCceee
Q psy3710 304 KLNELR------------------------RDSSYLCVSSD-HGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFC 358 (424)
Q Consensus 304 ~~~~~~------------------------~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (424)
+...+. .+...++.++. -+...++-+..-+....... .+
T Consensus 246 ~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~----------------~a 309 (376)
T KOG1188|consen 246 EETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTE----------------PA 309 (376)
T ss_pred hhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCc----------------cc
Confidence 654432 13444444444 56666665553221111111 11
Q ss_pred EEee-cCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 359 KFQI-PSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 359 ~~~~-~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
.+.. |...++++.|...+..+++|++||.+.+|..+
T Consensus 310 ~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 310 ILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 1222 44567788888889999999999999999964
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-20 Score=149.15 Aligned_cols=266 Identities=16% Similarity=0.200 Sum_probs=193.3
Q ss_pred CeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEecc--CceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe--
Q psy3710 23 GCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFR--CNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-- 97 (424)
Q Consensus 23 ~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-- 97 (424)
..+|++..++ |++||..+++.+.....+...+..+.|..+ ...+.+++ .||+|++||++.......+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~s-------sDG~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCS-------SDGTVRLWDIRSQAESARISWT 113 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEec-------cCCeEEEEEeecchhhhheecc
Confidence 4588888888 999999999888888888888888999874 45555555 58999999999887776665
Q ss_pred -ec-CCeEEEEecCCceEEEe-------eccEEEEeecCCCceeEEE-eeCCCCCeeEEEeecCCCCeEEEeeccCCeEE
Q psy3710 98 -FN-APVKGVRLRRDKIVVVL-------EGLIKVYTFIQCPQQLHVF-ETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVH 167 (424)
Q Consensus 98 -~~-~~v~~~~~~~~~~~~~~-------~~~i~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~ 167 (424)
++ .+..+++.+....++++ +-.+.+||++...+++..+ +.|. ..++++.|+|....++.+|+.||.|.
T Consensus 114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~--DDVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHN--DDVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhcc--CcceeEEecCCCCCeEEeecccceEE
Confidence 22 45677777755555554 6789999998555545544 4444 45889999998877777799999999
Q ss_pred EEeCCCCCC--CCcccccccCCeEEEEEccCC-CEEEEEecCCcEEEEEECCCcceeeEEecc-------------eee-
Q psy3710 168 LVDLADPER--PPLDIAAHEAPLSCIALNQTG-TRLATASYKGTLIRVFDTGSGQKLNELRRG-------------LCV- 230 (424)
Q Consensus 168 i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~-------------~~~- 230 (424)
+||+..... .+...-.|...|..+.|..++ +.+.+-+...+ ..+|+++.+.....++.+ ...
T Consensus 192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et-f~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I 270 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET-FAIYELEDGSEETWLENPDVSADDLRKEDNCDYVI 270 (376)
T ss_pred eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc-eeEEEccCCChhhcccCccchhhhHHhhhhhhhee
Confidence 999986522 233444677889999999877 46888888888 999999988766555433 111
Q ss_pred eeecCCC-CeEEEEeecCCeEEEEeCCC---C--CCCCeeecc-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEC
Q psy3710 231 LCPNSNN-SLLAFPGRKSGHVHLVDLAD---P--ERPPLDIAA-HEAPLSCIALNQTGTRLATASYKGTLIRVFDT 299 (424)
Q Consensus 231 ~~~~~~~-~~~~~~~~~dg~i~i~d~~~---~--~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~ 299 (424)
-+.+|.+ ...++.|+..|...++-+.. + ......+.+ |...|.++.|...+..+.||+.||. +.+|..
T Consensus 271 ~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~-l~~Wk~ 345 (376)
T KOG1188|consen 271 NEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGL-LQAWKV 345 (376)
T ss_pred ecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCce-EEEEec
Confidence 2333444 34444455466666665542 1 123334444 7778899999888889999999999 999986
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-20 Score=150.93 Aligned_cols=239 Identities=15% Similarity=0.190 Sum_probs=175.8
Q ss_pred cCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC----------------CcEEEEEe-ecCCeEEEEecCC--
Q psy3710 50 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK----------------KQVVICLE-FNAPVKGVRLRRD-- 110 (424)
Q Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~----------------~~~~~~~~-~~~~v~~~~~~~~-- 110 (424)
|.+.+..+...+-++..++++-+ ..|.|.||++.. .+++.++. |...=++++|||-
T Consensus 150 h~g~~NRvr~~~~~~~~~~asws-----e~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWS-----ENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred cccccceeeecccCCcceeeeec-----ccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 56667777777766666666655 479999999742 34455565 6777899999983
Q ss_pred ceEEEe--eccEEEEeecCCCceeE--EEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCC-CCCccccccc
Q psy3710 111 KIVVVL--EGLIKVYTFIQCPQQLH--VFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE-RPPLDIAAHE 185 (424)
Q Consensus 111 ~~~~~~--~~~i~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~ 185 (424)
|.++.. -+.|++|......-.+. .+.+|. ..+-.++|||....++++++.||+|+|||++.+. +.....++|.
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~--~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~ 302 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHT--KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN 302 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccc--cchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence 333333 57899999863222221 233444 4577889999877777779999999999999862 3444568999
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEEECCCc---ceeeEEec---ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCC
Q psy3710 186 APLSCIALNQTGTRLATASYKGTLIRVFDTGSG---QKLNELRR---GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE 259 (424)
Q Consensus 186 ~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 259 (424)
+.|+-|.|+..-.+|++|+.||+ ++|||+++- +++.+|+. +++++.|+|.....+++++.|.+|.+||+....
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt-~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGT-LSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred CceeeEEccCCcceeeecCCCce-EEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 99999999998889999999999 999999864 56667764 489999999999999999999999999997432
Q ss_pred C---------------CCeeeccC--CCCeEEEEEcCC-CCEEEEEeCCCcEEEEEE
Q psy3710 260 R---------------PPLDIAAH--EAPLSCIALNQT-GTRLATASYKGTLIRVFD 298 (424)
Q Consensus 260 ~---------------~~~~~~~~--~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd 298 (424)
. +.+.+--| ...+..+.|+++ ..++++.+.|| +.||.
T Consensus 382 D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG--fnVfk 436 (440)
T KOG0302|consen 382 DEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG--FNVFK 436 (440)
T ss_pred ChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc--eeEEE
Confidence 1 12222234 456788899985 35788888888 66664
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.9e-19 Score=153.60 Aligned_cols=257 Identities=15% Similarity=0.133 Sum_probs=173.4
Q ss_pred eccEEEEeecCCCc--eeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccc--cccCCeEEEE
Q psy3710 117 EGLIKVYTFIQCPQ--QLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA--AHEAPLSCIA 192 (424)
Q Consensus 117 ~~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~ 192 (424)
++.|.+|++..+++ .+..+... .....+.++|++++|++++..++.|.+|++... ..+.... ...+....++
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~---~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~-g~l~~~~~~~~~~~p~~i~ 86 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVP---GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD-GALTFAAESPLPGSPTHIS 86 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecC---CCCccEEECCCCCEEEEEECCCCcEEEEEECCC-CceEEeeeecCCCCceEEE
Confidence 88999999963333 33444332 224457889999998874567899999999732 1221111 1234567899
Q ss_pred EccCCCEEEEEec-CCcEEEEEECCCc----ceeeEEec--ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCC---
Q psy3710 193 LNQTGTRLATASY-KGTLIRVFDTGSG----QKLNELRR--GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPP--- 262 (424)
Q Consensus 193 ~~~~~~~l~~~~~-d~~~i~iwd~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~--- 262 (424)
|+|+++++++++. ++. |.+|++.+. +.+..+.. +...++++|+++.++++...++.|.+||+.+.....
T Consensus 87 ~~~~g~~l~v~~~~~~~-v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~ 165 (330)
T PRK11028 87 TDHQGRFLFSASYNANC-VSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE 165 (330)
T ss_pred ECCCCCEEEEEEcCCCe-EEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence 9999999888775 667 999999642 22233322 345677899999999988889999999998643211
Q ss_pred ---eeeccCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEECCC--Cc--ee------------------eeeccCCcEEE
Q psy3710 263 ---LDIAAHEAPLSCIALNQTGTRLATASY-KGTLIRVFDTGS--GQ--KL------------------NELRRDSSYLC 316 (424)
Q Consensus 263 ---~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~~i~iwd~~~--~~--~~------------------~~~~~~~~~l~ 316 (424)
... ........++|+|+|++++++.. ++. |.+|++.. ++ .+ ..++|++++++
T Consensus 166 ~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~-v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly 243 (330)
T PRK11028 166 PAEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSS-VDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY 243 (330)
T ss_pred CCceec-CCCCCCceEEECCCCCEEEEEecCCCE-EEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE
Confidence 011 12344678999999999988877 777 99999973 22 11 12568999988
Q ss_pred EEeC-CCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEec-cCcEEEEEec
Q psy3710 317 VSSD-HGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICA-DGSYYKFMFN 394 (424)
Q Consensus 317 ~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~~~~~~ 394 (424)
++.. ++.|.+|++.......+.... ... ......++++|||++|+++.. +++|.+|+++
T Consensus 244 v~~~~~~~I~v~~i~~~~~~~~~~~~------------------~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 244 ACDRTASLISVFSVSEDGSVLSFEGH------------------QPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EecCCCCeEEEEEEeCCCCeEEEeEE------------------Eec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 8854 789999999653211110000 000 112346799999999998876 8999999997
Q ss_pred C-Ccce
Q psy3710 395 S-KGEC 399 (424)
Q Consensus 395 ~-~~~~ 399 (424)
. ++.+
T Consensus 305 ~~~g~l 310 (330)
T PRK11028 305 GETGLL 310 (330)
T ss_pred CCCCcE
Confidence 4 3443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-18 Score=151.32 Aligned_cols=262 Identities=11% Similarity=0.085 Sum_probs=170.8
Q ss_pred ecCCeEEEEeCCcC-cc--cccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECC-CCcE--EEEEeecCC
Q psy3710 28 GMEDGFRIYNCDPL-KE--KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL-KKQV--VICLEFNAP 101 (424)
Q Consensus 28 g~~~~i~iw~~~~~-~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~-~~~~--~~~~~~~~~ 101 (424)
+.+++|.+|++.+. +. +.... ..+....+.++|++++|++++. .++.|.+|++. +++. +........
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~------~~~~i~~~~~~~~g~l~~~~~~~~~~~ 81 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVR------PEFRVLSYRIADDGALTFAAESPLPGS 81 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEEC------CCCcEEEEEECCCCceEEeeeecCCCC
Confidence 34444999999643 32 22222 2455677899999999877764 36899999986 3433 223334556
Q ss_pred eEEEEecCCceEEEe----eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCC
Q psy3710 102 VKGVRLRRDKIVVVL----EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERP 177 (424)
Q Consensus 102 v~~~~~~~~~~~~~~----~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~ 177 (424)
...++++|++..+++ ++.|.+|++...+.................+.++|++++++++...++.|.+||+.+....
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 788999999976654 7899999996333222222111111224556789999999876777899999999863222
Q ss_pred Cc------ccccccCCeEEEEEccCCCEEEEEec-CCcEEEEEECCC--cc--eeeEEec---c------eeeeeecCCC
Q psy3710 178 PL------DIAAHEAPLSCIALNQTGTRLATASY-KGTLIRVFDTGS--GQ--KLNELRR---G------LCVLCPNSNN 237 (424)
Q Consensus 178 ~~------~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~~i~iwd~~~--~~--~~~~~~~---~------~~~~~~~~~~ 237 (424)
.. ... .......++|+|+|++++++.. ++. |.+|++.. ++ .+..+.. . ...+.++|++
T Consensus 162 ~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~-v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 162 VAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSS-VDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred cccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCE-EEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 10 111 1234578999999999988876 777 99999973 22 2333321 0 1236789999
Q ss_pred CeEEEEeecCCeEEEEeCCCCCCCCeeeccC---CCCeEEEEEcCCCCEEEEEeC-CCcEEEEEECC
Q psy3710 238 SLLAFPGRKSGHVHLVDLADPERPPLDIAAH---EAPLSCIALNQTGTRLATASY-KGTLIRVFDTG 300 (424)
Q Consensus 238 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~-d~~~i~iwd~~ 300 (424)
+.++++...++.|.+|++.......... .+ ......++++|+|++|+++.. +++ |.+|++.
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~-~~~~~~~~p~~~~~~~dg~~l~va~~~~~~-v~v~~~~ 304 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFE-GHQPTETQPRGFNIDHSGKYLIAAGQKSHH-ISVYEID 304 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEe-EEEeccccCCceEECCCCCEEEEEEccCCc-EEEEEEc
Confidence 9988876678999999996543221111 11 124457788888888887765 666 7777664
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-19 Score=146.39 Aligned_cols=316 Identities=14% Similarity=0.150 Sum_probs=215.2
Q ss_pred CCceEEEEECCCCC-eeEeecCCe-EEEEeCCcCcc---------cccccccCCCeeeEEEeccCceEEEEeCCcCCCcC
Q psy3710 10 KNGLLYAGFNQDQG-CFACGMEDG-FRIYNCDPLKE---------KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYP 78 (424)
Q Consensus 10 ~~~V~~~~~s~~g~-~la~g~~~~-i~iw~~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~ 78 (424)
..+|.++.|.++.. .||+|+.|. |+||.++.... ......|...|..+.|+|+++.|++++ .
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~-------D 85 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG-------D 85 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC-------C
Confidence 46899999999876 999888777 99999765433 223455888999999999999998888 4
Q ss_pred CCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEeeccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEE
Q psy3710 79 NNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAF 158 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (424)
++.+.+|-...-.. + +... -.+-.= +.......+.+|. ..+..++|+|++.++++
T Consensus 86 ~g~v~lWk~~~~~~-----~----------~~d~--e~~~~k------e~w~v~k~lr~h~--~diydL~Ws~d~~~l~s 140 (434)
T KOG1009|consen 86 GGEVFLWKQGDVRI-----F----------DADT--EADLNK------EKWVVKKVLRGHR--DDIYDLAWSPDSNFLVS 140 (434)
T ss_pred CceEEEEEecCcCC-----c----------cccc--hhhhCc------cceEEEEEecccc--cchhhhhccCCCceeee
Confidence 68999997543000 0 0000 000000 0111223344444 44888999999999998
Q ss_pred eeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe-------------
Q psy3710 159 PGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR------------- 225 (424)
Q Consensus 159 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~------------- 225 (424)
|+-|..+++||+..+ +....+..|...+..++|.|-++++++-+.|.. .+.+.+...+.+....
T Consensus 141 -~s~dns~~l~Dv~~G-~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~-~~~~~~~~~~~~~~~~~~~m~~~~~~~~e 217 (434)
T KOG1009|consen 141 -GSVDNSVRLWDVHAG-QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRH-PEGFSAKLKQVIKRHGLDIMPAKAFNERE 217 (434)
T ss_pred -eeccceEEEEEeccc-eeEeeccccccccceeecchhhhhhhhhccCcc-cceeeeeeeeeeeeeeeeEeeecccCCCC
Confidence 999999999999998 788899999999999999999999999999887 7777665443322211
Q ss_pred --------cc-----eeeeeecCCCCeEEEEee---c-----CCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEE
Q psy3710 226 --------RG-----LCVLCPNSNNSLLAFPGR---K-----SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRL 284 (424)
Q Consensus 226 --------~~-----~~~~~~~~~~~~~~~~~~---~-----dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 284 (424)
.. ....+|+|+|..++.-++ . -+..++|+-..-+.+...+.....+...+.|+|- +.
T Consensus 218 ~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pV--y~ 295 (434)
T KOG1009|consen 218 GKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPV--YY 295 (434)
T ss_pred cceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeee--EE
Confidence 00 344688888888776322 1 3345777776666677777777777777777762 11
Q ss_pred EEEeCCCcEEEEEECCCCceeeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecC
Q psy3710 285 ATASYKGTLIRVFDTGSGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPS 364 (424)
Q Consensus 285 ~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (424)
-....+.... ++. -|-+-.++.++. ..++|||.++..++... -.+|-
T Consensus 296 elrp~~~~~~-~~~----------lpyrlvfaiAt~-~svyvydtq~~~P~~~v---------------------~nihy 342 (434)
T KOG1009|consen 296 ELRPLSSEKF-LFV----------LPYRLVFAIATK-NSVYVYDTQTLEPLAVV---------------------DNIHY 342 (434)
T ss_pred Eecccccccc-ccc----------cccceEEEEeec-ceEEEeccccccceEEE---------------------eeeee
Confidence 1111111000 111 133334555554 48999999886554322 23456
Q ss_pred CCceEEEEecCCCeEEEEeccCcEEEEEecC
Q psy3710 365 DPPCICAFGADSNSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 365 ~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~ 395 (424)
..+++++|++||.+|++.+.||..-+-.+++
T Consensus 343 ~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 343 SAITDIAWSDDGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred eeecceeecCCCcEEEEeccCCceEEEEEcc
Confidence 7789999999999999999999998888873
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-18 Score=138.50 Aligned_cols=245 Identities=14% Similarity=0.182 Sum_probs=172.6
Q ss_pred CeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCC---CCcccccccCCeEEEEEcc--CCCEEEEEecCCcEEEEEECC
Q psy3710 142 KGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER---PPLDIAAHEAPLSCIALNQ--TGTRLATASYKGTLIRVFDTG 216 (424)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~~i~iwd~~ 216 (424)
.-+.++.|++.|+.+++ ++.|++|+|||.+.... .....+.|.+.|..+.|.+ -|+.+++++.|++ +.||.-.
T Consensus 14 DlihdVs~D~~GRRmAt-CSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt-v~iWEE~ 91 (361)
T KOG2445|consen 14 DLIHDVSFDFYGRRMAT-CSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT-VSIWEEQ 91 (361)
T ss_pred ceeeeeeecccCceeee-ccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc-eeeeeec
Confidence 34778899999999998 99999999999765421 2336778999999999965 5899999999999 9999752
Q ss_pred Cc---------ceeeEEe---cceeeeeecCCC-CeEEEEeecCCeEEEEeCCCCCCC-----Cee-------eccCCCC
Q psy3710 217 SG---------QKLNELR---RGLCVLCPNSNN-SLLAFPGRKSGHVHLVDLADPERP-----PLD-------IAAHEAP 271 (424)
Q Consensus 217 ~~---------~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~~~-----~~~-------~~~~~~~ 271 (424)
.. ....++. ..+..++|.|.. +..+++++.||.++||+....-.. ... ...+..+
T Consensus 92 ~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~ 171 (361)
T KOG2445|consen 92 EKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQP 171 (361)
T ss_pred ccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCc
Confidence 11 1112222 236677887754 455667999999999998765321 111 2246778
Q ss_pred eEEEEEcCC---CCEEEEEeCC-----CcEEEEEECCCCc-eee---e------------ecc----CCcEEEEEeCCCc
Q psy3710 272 LSCIALNQT---GTRLATASYK-----GTLIRVFDTGSGQ-KLN---E------------LRR----DSSYLCVSSDHGT 323 (424)
Q Consensus 272 v~~~~~~~~---~~~l~~~~~d-----~~~i~iwd~~~~~-~~~---~------------~~~----~~~~l~~~~~d~~ 323 (424)
..|+.|+|. ..+||.|+.+ +. ++||....+. ... + |.| .-.+||+++.||
T Consensus 172 ~~CvsWn~sr~~~p~iAvgs~e~a~~~~~-~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg- 249 (361)
T KOG2445|consen 172 CFCVSWNPSRMHEPLIAVGSDEDAPHLNK-VKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG- 249 (361)
T ss_pred ceEEeeccccccCceEEEEcccCCccccc-eEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-
Confidence 899999973 4688888887 34 8888776543 111 1 333 346799999999
Q ss_pred EEEEEcccccc-ccccccceeeeccCc--cccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecC
Q psy3710 324 VHVFSVDEAQK-INKQSSLASASFLPK--YFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 324 i~iw~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~ 395 (424)
|+||.+..... +..... ..|. ..-....+..+..|++++..+.|+.-|..|.+.+.||.|++|..+-
T Consensus 250 v~I~~v~~~~s~i~~ee~-----~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 250 VRIFKVKVARSAIEEEEV-----LAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EEEEEEeeccchhhhhcc-----cCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 99999986321 111000 0011 0011223445677899999999999999999999999999998763
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-20 Score=174.75 Aligned_cols=251 Identities=18% Similarity=0.230 Sum_probs=190.8
Q ss_pred CCeEEEEECC--CC----cEEEEEeecCCeEEEEecCCceE----EE-e--eccEEEEeecCC--C---ceeEEEeeCCC
Q psy3710 79 NNRVMIWDDL--KK----QVVICLEFNAPVKGVRLRRDKIV----VV-L--EGLIKVYTFIQC--P---QQLHVFETNPN 140 (424)
Q Consensus 79 d~~i~iwd~~--~~----~~~~~~~~~~~v~~~~~~~~~~~----~~-~--~~~i~v~~~~~~--~---~~~~~~~~~~~ 140 (424)
+.++.||.+. +. +.+..+.....-+.++|.+.+.. ++ . ||.|.+||...- + ..+.....|.+
T Consensus 38 ~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G 117 (1049)
T KOG0307|consen 38 SASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTG 117 (1049)
T ss_pred ccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCC
Confidence 4455555443 22 23334445667788999765432 44 3 999999998531 1 23444555554
Q ss_pred CCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcc-cccccCCeEEEEEccC-CCEEEEEecCCcEEEEEECCCc
Q psy3710 141 PKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD-IAAHEAPLSCIALNQT-GTRLATASYKGTLIRVFDTGSG 218 (424)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd~~~~ 218 (424)
+ |..+.|++....++++|+.||.|.|||+.+.+.+... -....+.|.+++|+.. ...|++++.+|. +.|||++..
T Consensus 118 ~--V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~-~~iWDlr~~ 194 (1049)
T KOG0307|consen 118 P--VLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR-AVIWDLRKK 194 (1049)
T ss_pred c--eeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCC-ceeccccCC
Confidence 4 7889999988744444999999999999986433332 2235678999999874 467889999999 999999999
Q ss_pred ceeeEEecc-----eeeeeecCCCCeEEEEeecCC---eEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCC-CEEEEEeC
Q psy3710 219 QKLNELRRG-----LCVLCPNSNNSLLAFPGRKSG---HVHLVDLADPERPPLDIAAHEAPLSCIALNQTG-TRLATASY 289 (424)
Q Consensus 219 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~ 289 (424)
+.+..+..+ ...+.|+|++..-+++++.|. .|.+||++....+.+.+.+|...|.++.|++.+ ++|++++.
T Consensus 195 ~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk 274 (1049)
T KOG0307|consen 195 KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK 274 (1049)
T ss_pred CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC
Confidence 888777643 558899999877666666554 699999999988899999999999999999955 89999999
Q ss_pred CCcEEEEEECCCCceeeeecc-------------CCcEEEEEeCCCcEEEEEccccc
Q psy3710 290 KGTLIRVFDTGSGQKLNELRR-------------DSSYLCVSSDHGTVHVFSVDEAQ 333 (424)
Q Consensus 290 d~~~i~iwd~~~~~~~~~~~~-------------~~~~l~~~~~d~~i~iw~~~~~~ 333 (424)
|+. |.+|+.++++.+.++.. +...+++++-||.|.||.+.+..
T Consensus 275 D~~-ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 275 DNR-IICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCC-eeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999 99999999999987643 33478889999999999998754
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-20 Score=141.75 Aligned_cols=279 Identities=12% Similarity=0.168 Sum_probs=189.5
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCccccccc-ccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeE
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQD-FTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 82 (424)
.|++|.+.|+++.|..+++ |.+|...| +++|++.+........ ++...|+.+...|+ +.+.+-+ .|..+
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqg-------Rd~~L 79 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQG-------RDPLL 79 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcC-------CCceE
Confidence 3789999999999988876 77888888 9999999888766666 56777888888877 5555555 58999
Q ss_pred EEEECCCCcEEEEEeecCCeEEEEecC-----Cc----eEEEe-e---ccEEEEeecCCCceeEEEeeC--CCCCeeEEE
Q psy3710 83 MIWDDLKKQVVICLEFNAPVKGVRLRR-----DK----IVVVL-E---GLIKVYTFIQCPQQLHVFETN--PNPKGLCVL 147 (424)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~v~~~~~~~-----~~----~~~~~-~---~~i~v~~~~~~~~~~~~~~~~--~~~~~~~~~ 147 (424)
.+|++..+..+..-. -.++++.|.+ +. ..++. + ..+++-|.. ....+...... .....+.+.
T Consensus 80 ~lw~ia~s~~i~i~S--i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g-~~tqv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHS--IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGG-DTTQVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred EEEEccCcceEEEee--eeccccccccceeccCCCcchhheecCCcccchhhhhccC-ccceeEccCchhccccCceeee
Confidence 999997766554332 2233333322 11 12222 1 112222321 11111111111 111223333
Q ss_pred ee--cCCCCeEEEeeccCCeEEEEeCCCCCC---------CCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECC
Q psy3710 148 CP--NSNNSLLAFPGRKSGHVHLVDLADPER---------PPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 216 (424)
Q Consensus 148 ~~--~~~~~~l~~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 216 (424)
.+ .-....++.+|.++|.+.+||+.++.+ .......|..+|.++.+.+.-..=++++.+.. +..|.+.
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk-l~~~Sl~ 235 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK-LVMYSLN 235 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc-ceeeeec
Confidence 32 222344555599999999999998522 22344578999999999987666788888888 8999886
Q ss_pred Cc--ce----eeEEe-cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeC
Q psy3710 217 SG--QK----LNELR-RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY 289 (424)
Q Consensus 217 ~~--~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 289 (424)
.. .. ..+++ .++..+.+-|+++.++ +++.|+.|++|..++.. +...++-|.+.|++++|+|+...+|+++.
T Consensus 236 ~s~gslq~~~e~~lknpGv~gvrIRpD~KIlA-TAGWD~RiRVyswrtl~-pLAVLkyHsagvn~vAfspd~~lmAaask 313 (323)
T KOG0322|consen 236 HSTGSLQIRKEITLKNPGVSGVRIRPDGKILA-TAGWDHRIRVYSWRTLN-PLAVLKYHSAGVNAVAFSPDCELMAAASK 313 (323)
T ss_pred cccCcccccceEEecCCCccceEEccCCcEEe-ecccCCcEEEEEeccCC-chhhhhhhhcceeEEEeCCCCchhhhccC
Confidence 43 11 12222 3366677777776554 59999999999999977 56777889999999999999999999999
Q ss_pred CCcEEEEEEC
Q psy3710 290 KGTLIRVFDT 299 (424)
Q Consensus 290 d~~~i~iwd~ 299 (424)
|++ |.+|++
T Consensus 314 D~r-ISLWkL 322 (323)
T KOG0322|consen 314 DAR-ISLWKL 322 (323)
T ss_pred Cce-EEeeec
Confidence 999 999986
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-20 Score=173.22 Aligned_cols=242 Identities=14% Similarity=0.181 Sum_probs=192.7
Q ss_pred CCceEEEEECCCCCe----eEeecCCe-EEEEeCCcC---cc---cccccccCCCeeeEEEeccCceEEEEeCCcCCCcC
Q psy3710 10 KNGLLYAGFNQDQGC----FACGMEDG-FRIYNCDPL---KE---KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYP 78 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~----la~g~~~~-i~iw~~~~~---~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~ 78 (424)
...-+.++|.+.|.. ||.|.+|| |.+||.... .. +.....|.+.|..+.|.+...-++..++ .
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa------~ 137 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGA------D 137 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccC------C
Confidence 446678999988765 88999999 999997663 21 4445669999999999998774443333 4
Q ss_pred CCeEEEEECCCCcEEEEE---eecCCeEEEEecCCce-EEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecC
Q psy3710 79 NNRVMIWDDLKKQVVICL---EFNAPVKGVRLRRDKI-VVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNS 151 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~-~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (424)
||.|.|||+++-+.-... ...+.|.+++|+..-. ++++ +|.+.|||++ ..+.+..+..+.....+..+.|+|
T Consensus 138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr-~~~pii~ls~~~~~~~~S~l~WhP 216 (1049)
T KOG0307|consen 138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR-KKKPIIKLSDTPGRMHCSVLAWHP 216 (1049)
T ss_pred CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceecccc-CCCcccccccCCCccceeeeeeCC
Confidence 899999999875544443 2567899999997753 4444 7899999998 556666676666656678899999
Q ss_pred CCCeEEEeeccC---CeEEEEeCCCCCCCCcccccccCCeEEEEEccCC-CEEEEEecCCcEEEEEECCCcceeeEEecc
Q psy3710 152 NNSLLAFPGRKS---GHVHLVDLADPERPPLDIAAHEAPLSCIALNQTG-TRLATASYKGTLIRVFDTGSGQKLNELRRG 227 (424)
Q Consensus 152 ~~~~l~~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~ 227 (424)
++..-+.+++.| -.|.+||++....+.+.+++|...|.++.|++.+ +++++++.|+. |.+|+.++++.+.++...
T Consensus 217 ~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~tgEvl~~~p~~ 295 (1049)
T KOG0307|consen 217 DHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNTGEVLGELPAQ 295 (1049)
T ss_pred CCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCC-eeEecCCCceEeeecCCC
Confidence 876543335544 4699999998778889999999999999999966 89999999999 999999999999999864
Q ss_pred ---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCC
Q psy3710 228 ---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE 259 (424)
Q Consensus 228 ---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 259 (424)
..-+.|.|....++++++.||.|.||.+....
T Consensus 296 ~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 296 GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 56688999999888889999999999998755
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=139.76 Aligned_cols=337 Identities=13% Similarity=0.084 Sum_probs=213.2
Q ss_pred CccccccccCCceEEEEECCCCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCC
Q psy3710 1 MNLGTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNN 80 (424)
Q Consensus 1 m~~~~l~~h~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~ 80 (424)
|+...+....++ -++|||+|+++|+.++-.+.|-|.++.+....... -..|..+.|..+.-+++.+.. .|+
T Consensus 1 M~Fte~fk~~~~--~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~y------k~~ 71 (447)
T KOG4497|consen 1 MDFTELFKSLNP--FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAY------KDP 71 (447)
T ss_pred CChHHHHHhcCC--ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeee------ccc
Confidence 444444444454 46899999999999988899999988887554444 456888999988888776663 589
Q ss_pred eEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe----eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCe
Q psy3710 81 RVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL----EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSL 155 (424)
Q Consensus 81 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~----~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (424)
.|.+|++...+-..++. .+..+.++.|+|||+.+.. +-.|.||.+. +.+ ...++.... .+-.++++|||++
T Consensus 72 ~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~-t~~-~~~~~~pK~--~~kg~~f~~dg~f 147 (447)
T KOG4497|consen 72 KVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLN-TQK-GYLLPHPKT--NVKGYAFHPDGQF 147 (447)
T ss_pred eEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEec-cce-eEEeccccc--CceeEEECCCCce
Confidence 99999999988888888 6889999999999965543 7899999995 332 222333332 2456789999999
Q ss_pred EEEeecc-C-----------------------------------CeEEEEeCCCCCCCCcccccc-cCCeEEEEEccCCC
Q psy3710 156 LAFPGRK-S-----------------------------------GHVHLVDLADPERPPLDIAAH-EAPLSCIALNQTGT 198 (424)
Q Consensus 156 l~~~~~~-d-----------------------------------g~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~ 198 (424)
.+. .+. | ..+.+||---. - +.+.-| .-.+..++|+|.++
T Consensus 148 ~ai-~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le-y--kv~aYe~~lG~k~v~wsP~~q 223 (447)
T KOG4497|consen 148 CAI-LSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE-Y--KVYAYERGLGLKFVEWSPCNQ 223 (447)
T ss_pred eee-eecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh-h--eeeeeeeccceeEEEeccccc
Confidence 887 432 1 22333332210 0 011111 23466667777777
Q ss_pred EEEEEecCCcEEEEEECCCcceeeEEecc----------------------eeeeeecCCCCeEEEEeecCCeEEEEeCC
Q psy3710 199 RLATASYKGTLIRVFDTGSGQKLNELRRG----------------------LCVLCPNSNNSLLAFPGRKSGHVHLVDLA 256 (424)
Q Consensus 199 ~l~~~~~d~~~i~iwd~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~dg~i~i~d~~ 256 (424)
+|+.|+.|+. +++.+--+.+...++-.. ..++.+.|.+ -...+|...
T Consensus 224 flavGsyD~~-lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~----------~~a~~~~~s 292 (447)
T KOG4497|consen 224 FLAVGSYDQM-LRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD----------LEAHIWEES 292 (447)
T ss_pred eEEeeccchh-hhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCc----------cccCccccc
Confidence 7777777776 666665544433332110 1112222211 111111111
Q ss_pred -------CC------CCCCeeeccCCCCeEEEEEcCCCCEEEEEeCC--CcEEEEEECCCCcee-----------eeecc
Q psy3710 257 -------DP------ERPPLDIAAHEAPLSCIALNQTGTRLATASYK--GTLIRVFDTGSGQKL-----------NELRR 310 (424)
Q Consensus 257 -------~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~~i~iwd~~~~~~~-----------~~~~~ 310 (424)
.- .++...+....-.+.-++|++|..+++|-... .. +-+||++..+.- .++.|
T Consensus 293 e~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~Pna-lW~Wdlq~l~l~avLiQk~piraf~WdP 371 (447)
T KOG4497|consen 293 ETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNA-LWLWDLQNLKLHAVLIQKHPIRAFEWDP 371 (447)
T ss_pred hhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCce-EEEEechhhhhhhhhhhccceeEEEeCC
Confidence 00 01112222334567789999999998886543 44 999999875432 23567
Q ss_pred CCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEE
Q psy3710 311 DSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYY 389 (424)
Q Consensus 311 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~ 389 (424)
....|+.+.....+++|.......+.. | .++-.|..+.|.-+|..++..+.|..-.
T Consensus 372 ~~prL~vctg~srLY~W~psg~~~V~v----------P-------------~~GF~i~~l~W~~~g~~i~l~~kDafc~ 427 (447)
T KOG4497|consen 372 GRPRLVVCTGKSRLYFWAPSGPRVVGV----------P-------------KKGFNIQKLQWLQPGEFIVLCGKDAFCV 427 (447)
T ss_pred CCceEEEEcCCceEEEEcCCCceEEec----------C-------------CCCceeeeEEecCCCcEEEEEcCCceEE
Confidence 777788877777899999877443321 1 1123466889999999999999887433
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-16 Score=145.91 Aligned_cols=334 Identities=21% Similarity=0.332 Sum_probs=241.8
Q ss_pred cccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCc-EEEEEee-cC-CeEEEEe-cCCce-EEEe----ec
Q psy3710 48 DFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ-VVICLEF-NA-PVKGVRL-RRDKI-VVVL----EG 118 (424)
Q Consensus 48 ~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~-~~-~v~~~~~-~~~~~-~~~~----~~ 118 (424)
..+...+..+.+.+.+..++..+ .|+.+.+|+...+. ....+.. .. .+..+.+ .+++. .+.. ++
T Consensus 62 ~~~~~~i~~~~~~~~~~~~~~~~-------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 134 (466)
T COG2319 62 RGHEDSITSIAFSPDGELLLSGS-------SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG 134 (466)
T ss_pred eeccceEEEEEECCCCcEEEEec-------CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCc
Confidence 44678888999999999888887 48999999998886 5666653 32 6777777 77765 3332 78
Q ss_pred cEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeecc-CCeEEEEeCCCCCCCCcccccccCCeEEEEEccCC
Q psy3710 119 LIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRK-SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTG 197 (424)
Q Consensus 119 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 197 (424)
.+.+|+..........+..|... +..+.++|++..++. ++. ++.+++|++... .....+..|...|.+++|+|++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 210 (466)
T COG2319 135 TVKLWDLSTPGKLIRTLEGHSES--VTSLAFSPDGKLLAS-GSSLDGTIKLWDLRTG-KPLSTLAGHTDPVSSLAFSPDG 210 (466)
T ss_pred cEEEEEecCCCeEEEEEecCccc--EEEEEECCCCCEEEe-cCCCCCceEEEEcCCC-ceEEeeccCCCceEEEEEcCCc
Confidence 99999996225666777777644 668999999998887 665 999999999974 6777788899999999999999
Q ss_pred C-EEEEEecCCcEEEEEECCCcceee-EEecceee--eeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeE
Q psy3710 198 T-RLATASYKGTLIRVFDTGSGQKLN-ELRRGLCV--LCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLS 273 (424)
Q Consensus 198 ~-~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 273 (424)
. .+++++.|+. |++||...+.... .+..+... ..+++++ .++++++.++.+++|+..........+..|...+.
T Consensus 211 ~~~~~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~ 288 (466)
T COG2319 211 GLLIASGSSDGT-IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL 288 (466)
T ss_pred ceEEEEecCCCc-EEEEECCCCcEEeeecCCCCcceeEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEE
Confidence 8 5555589999 9999998777777 46554332 2788888 44447999999999999977652333357899999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec--------------cCCcEEEEE-eCCCcEEEEEcccccccccc
Q psy3710 274 CIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR--------------RDSSYLCVS-SDHGTVHVFSVDEAQKINKQ 338 (424)
Q Consensus 274 ~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~--------------~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~ 338 (424)
++.|+|++..+++++.|+. +++|+..+........ +++..++.+ ..|+.+.+|++.........
T Consensus 289 ~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 367 (466)
T COG2319 289 SVAFSPDGKLLASGSSDGT-VRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL 367 (466)
T ss_pred EEEECCCCCEEEEeeCCCc-EEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEe
Confidence 9999998889988999988 9999998766544432 122344444 57788888888775411000
Q ss_pred ccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEE-EeccCcEEEEEecCCcceeee----eehhhheecCC
Q psy3710 339 SSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIV-ICADGSYYKFMFNSKGECWRD----VYIQFLEMTND 413 (424)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~dg~v~~~~~~~~~~~~~~----~~~~~~~~~~d 413 (424)
.....+..+.+++ ...++. +..++.+.+|+.......... .......++++
T Consensus 368 -----------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (466)
T COG2319 368 -----------------------EGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPD 423 (466)
T ss_pred -----------------------cCCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCC
Confidence 0011155777888 544444 688999999999854332221 34445566777
Q ss_pred CceeeE
Q psy3710 414 SNLLSC 419 (424)
Q Consensus 414 ~~~l~~ 419 (424)
+..++.
T Consensus 424 ~~~~~~ 429 (466)
T COG2319 424 GKSLAS 429 (466)
T ss_pred CcEEEE
Confidence 776654
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-19 Score=155.98 Aligned_cols=261 Identities=13% Similarity=0.200 Sum_probs=199.9
Q ss_pred CCeEEEEecCCce--EEEeeccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCC
Q psy3710 100 APVKGVRLRRDKI--VVVLEGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERP 177 (424)
Q Consensus 100 ~~v~~~~~~~~~~--~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~ 177 (424)
..|..++|.|||. +++.+..+.+||.. .+..+.++++|... +.+++++.||+.+++ |+.|..|.+|.-.-. -
T Consensus 13 hci~d~afkPDGsqL~lAAg~rlliyD~n-dG~llqtLKgHKDt--VycVAys~dGkrFAS-G~aDK~VI~W~~klE--G 86 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAGSRLLVYDTS-DGTLLQPLKGHKDT--VYCVAYAKDGKRFAS-GSADKSVIIWTSKLE--G 86 (1081)
T ss_pred cchheeEECCCCceEEEecCCEEEEEeCC-Ccccccccccccce--EEEEEEccCCceecc-CCCceeEEEeccccc--c
Confidence 3789999999984 44458999999996 88999999999854 889999999999998 999999999986542 1
Q ss_pred CcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceee-EEecceeeeeecCCCCeEEEEeecCCeEEEEeCC
Q psy3710 178 PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN-ELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLA 256 (424)
Q Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~ 256 (424)
..-..|.+.|.|+.|+|-...|++++-.. .-+|......... .....+...+|..+|.++++ |-.+|+|.+-+-.
T Consensus 87 -~LkYSH~D~IQCMsFNP~~h~LasCsLsd--FglWS~~qK~V~K~kss~R~~~CsWtnDGqylal-G~~nGTIsiRNk~ 162 (1081)
T KOG1538|consen 87 -ILKYSHNDAIQCMSFNPITHQLASCSLSD--FGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLAL-GMFNGTISIRNKN 162 (1081)
T ss_pred -eeeeccCCeeeEeecCchHHHhhhcchhh--ccccChhhhhHHhhhhheeEEEeeecCCCcEEEE-eccCceEEeecCC
Confidence 12236999999999999999999998766 6889876543322 22233566778888888887 9999999998655
Q ss_pred CCCCCC-eeeccCCCCeEEEEEcCCC-----CEEEEEeCCCcEEEEEECCCCceee-----------eeccCCcEEEEEe
Q psy3710 257 DPERPP-LDIAAHEAPLSCIALNQTG-----TRLATASYKGTLIRVFDTGSGQKLN-----------ELRRDSSYLCVSS 319 (424)
Q Consensus 257 ~~~~~~-~~~~~~~~~v~~~~~~~~~-----~~l~~~~~d~~~i~iwd~~~~~~~~-----------~~~~~~~~l~~~~ 319 (424)
..+... ..-.+..++|.+++|+|.. ..++......+ +.++.+.....-+ ++-++|.++..|+
T Consensus 163 gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGG 241 (1081)
T KOG1538|consen 163 GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGG 241 (1081)
T ss_pred CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEEecceeecccccCCCCchhheeccCCcEEEEcc
Confidence 433222 2223578899999999952 47888888888 8888876422211 2447999999999
Q ss_pred CCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 320 DHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 320 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
.|+.+++|--+. -.+..... -...|+.++..|++++++.|+.||+|..|++.
T Consensus 242 sdk~L~~fTR~G-vrLGTvg~----------------------~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 242 SDKQLSLFTRDG-VRLGTVGE----------------------QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred CCCceEEEeecC-eEEeeccc----------------------cceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 999999997554 33322211 12346788999999999999999999999986
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-19 Score=143.96 Aligned_cols=314 Identities=13% Similarity=0.151 Sum_probs=214.0
Q ss_pred eEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe----eccEEEEeecCCCce
Q psy3710 56 HVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL----EGLIKVYTFIQCPQQ 131 (424)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~i~v~~~~~~~~~ 131 (424)
..+|+|+++++|+++ +-.+.|-|.++-+..+.+..-..|.-+.|..|..++.. ++.|.+|++. ..+-
T Consensus 13 ~c~fSp~g~yiAs~~--------~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~-Qpew 83 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS--------RYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLV-QPEW 83 (447)
T ss_pred ceeECCCCCeeeeee--------eeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEee-ccee
Confidence 478999999999998 56888999888776666666677888889888755443 8899999996 4444
Q ss_pred eEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCc--E
Q psy3710 132 LHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGT--L 209 (424)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--~ 209 (424)
...+. .++.++.+.+|+|||+.|+.+...+-.|.+|.+.+. ....+.-.+..+..++|+|+|++.+.++.... .
T Consensus 84 ~ckId--eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~--~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdy 159 (447)
T KOG4497|consen 84 YCKID--EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ--KGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDY 159 (447)
T ss_pred EEEec--cCCCcceeeeECCCcceEeeeecceeEEEEEEeccc--eeEEecccccCceeEEECCCCceeeeeecccHHHH
Confidence 44443 455678899999999888877888999999999984 33444444556789999999999988876432 0
Q ss_pred EEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEE
Q psy3710 210 IRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLAT 286 (424)
Q Consensus 210 i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 286 (424)
+.+........+..++.+ ...+-++|+|..+++ ||---..... .-...-.+..++|+|.+++|+.
T Consensus 160 v~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV----------wd~~Leykv~--aYe~~lG~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 160 VQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV----------WDNVLEYKVY--AYERGLGLKFVEWSPCNQFLAV 227 (447)
T ss_pred HHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE----------ecchhhheee--eeeeccceeEEEeccccceEEe
Confidence 222222233444455433 566788999887775 4432211100 1123356889999999999999
Q ss_pred EeCCCcEEEEEECCCCceeeee----------------------------------------------------------
Q psy3710 287 ASYKGTLIRVFDTGSGQKLNEL---------------------------------------------------------- 308 (424)
Q Consensus 287 ~~~d~~~i~iwd~~~~~~~~~~---------------------------------------------------------- 308 (424)
|+.|+. +|+.+--+.+...+|
T Consensus 228 GsyD~~-lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~ 306 (447)
T KOG4497|consen 228 GSYDQM-LRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVH 306 (447)
T ss_pred eccchh-hhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeee
Confidence 999999 998776554443322
Q ss_pred --------------------ccCCcEEEEEeC--CCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCC
Q psy3710 309 --------------------RRDSSYLCVSSD--HGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDP 366 (424)
Q Consensus 309 --------------------~~~~~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (424)
++|..++++-.+ -+.+.+||+..-+.. .+-...++
T Consensus 307 ~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~-----------------------avLiQk~p 363 (447)
T KOG4497|consen 307 KLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLH-----------------------AVLIQKHP 363 (447)
T ss_pred cccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhh-----------------------hhhhhccc
Confidence 124445554432 245667776653321 11223567
Q ss_pred ceEEEEecCCCeEEEEeccCcEEEEEecCCcceee----eeehhhheecCCCceeeE
Q psy3710 367 PCICAFGADSNSIIVICADGSYYKFMFNSKGECWR----DVYIQFLEMTNDSNLLSC 419 (424)
Q Consensus 367 ~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~~~----~~~~~~~~~~~d~~~l~~ 419 (424)
|....|.|....|+++.....+++|... +..++. -+.+..+++..+|++++-
T Consensus 364 iraf~WdP~~prL~vctg~srLY~W~ps-g~~~V~vP~~GF~i~~l~W~~~g~~i~l 419 (447)
T KOG4497|consen 364 IRAFEWDPGRPRLVVCTGKSRLYFWAPS-GPRVVGVPKKGFNIQKLQWLQPGEFIVL 419 (447)
T ss_pred eeEEEeCCCCceEEEEcCCceEEEEcCC-CceEEecCCCCceeeeEEecCCCcEEEE
Confidence 8888999999999998888889999865 433332 345566777778877653
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-20 Score=166.98 Aligned_cols=281 Identities=14% Similarity=0.154 Sum_probs=216.0
Q ss_pred cccccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCe
Q psy3710 3 LGTSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNR 81 (424)
Q Consensus 3 ~~~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 81 (424)
+..|.||.+.|+|+.|...|.++++|+++. ++||..++..+.....+|.+.++.++.+..+-.+++++ .|..
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS-------~D~v 255 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAAS-------NDKV 255 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcc-------cCce
Confidence 445899999999999999999999999999 99999999999888899999999999998888888887 6899
Q ss_pred EEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEee---CCCCCeeEEEeecCCCCe
Q psy3710 82 VMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFET---NPNPKGLCVLCPNSNNSL 155 (424)
Q Consensus 82 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 155 (424)
|++|.+.++.++..+. |.+.|++++|+|-. ++ ||++++||.+ ......... ......+..+.+...+..
T Consensus 256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r--~~~~~y~prp~~~~~~~~~~s~~~~~~~~~ 330 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR--LEPRIYVPRPLKFTEKDLVDSILFENNGDR 330 (1113)
T ss_pred EEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEecccc--ccccccCCCCCCcccccceeeeeccccccc
Confidence 9999999999999887 89999999999976 33 8999999986 111111100 011123445556566666
Q ss_pred EEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCC-CEEEEEecCCcEEEEEECCCcceeeEEecc---eeee
Q psy3710 156 LAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTG-TRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVL 231 (424)
Q Consensus 156 l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~ 231 (424)
.++ |+.|+.-..|.+... ..+...+.-+.++.+. .+.+++-.+.. +++|++.++...+.+.++ ..++
T Consensus 331 f~T-gs~d~ea~n~e~~~l-------~~~~~~lif~t~ssd~~~~~~~ar~~~~-~~vwnl~~g~l~H~l~ghsd~~yvL 401 (1113)
T KOG0644|consen 331 FLT-GSRDGEARNHEFEQL-------AWRSNLLIFVTRSSDLSSIVVTARNDHR-LCVWNLYTGQLLHNLMGHSDEVYVL 401 (1113)
T ss_pred ccc-ccCCcccccchhhHh-------hhhccceEEEeccccccccceeeeeeeE-eeeeecccchhhhhhcccccceeee
Confidence 776 888888777765431 1222222222222222 45666667777 999999999777666544 7788
Q ss_pred eecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceee
Q psy3710 232 CPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN 306 (424)
Q Consensus 232 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~ 306 (424)
.++|.+..++.+++.||...|||+-.+........+ ...+..-+||+||..++....-|. +.|.....++...
T Consensus 402 d~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgq-l~i~g~gqs~s~k 474 (1113)
T KOG0644|consen 402 DVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQ-LYILGTGQSKSQK 474 (1113)
T ss_pred eecCCCcHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCc-eEEeccCCCcccc
Confidence 999999999999999999999999987755444445 456677799999999999888888 9998877665544
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-18 Score=137.56 Aligned_cols=288 Identities=13% Similarity=0.127 Sum_probs=196.6
Q ss_pred CCCeEEEEECCCCc--EEE-EEe-ecCCeEEEEecCCc-eEEEe------e----ccEEEEeecCCCce--------eEE
Q psy3710 78 PNNRVMIWDDLKKQ--VVI-CLE-FNAPVKGVRLRRDK-IVVVL------E----GLIKVYTFIQCPQQ--------LHV 134 (424)
Q Consensus 78 ~d~~i~iwd~~~~~--~~~-~~~-~~~~v~~~~~~~~~-~~~~~------~----~~i~v~~~~~~~~~--------~~~ 134 (424)
.|+.|.+.++..+. ... .+. +.+.|+.++-+|-. .++++ + ..+.||.+...... +..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 46788877765433 222 333 57899999999865 34443 1 25789998533222 222
Q ss_pred EeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCccc-----ccccCCeEEEEEcc--CCCEEEEEecCC
Q psy3710 135 FETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDI-----AAHEAPLSCIALNQ--TGTRLATASYKG 207 (424)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~v~~~~~~~--~~~~l~~~~~d~ 207 (424)
+.... ...+.++.|.|++..+++ -.|..|.+|++....+....+ .+|....++-+|+| +|+.+++.+ |+
T Consensus 118 Ldtea-vg~i~cvew~Pns~klas--m~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~ 193 (370)
T KOG1007|consen 118 LDTEA-VGKINCVEWEPNSDKLAS--MDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DS 193 (370)
T ss_pred CCHHH-hCceeeEEEcCCCCeeEE--eccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CC
Confidence 22111 124788999999999985 558999999999864423322 23566788899999 677777765 67
Q ss_pred cEEEEEECCCcceeeEEecc----eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcC-CCC
Q psy3710 208 TLIRVFDTGSGQKLNELRRG----LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ-TGT 282 (424)
Q Consensus 208 ~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 282 (424)
+ +..||+++.++...+... +..+.++|+.+.+++++++||.|++||.+..+.++..+.+|...|.++.|+| ..+
T Consensus 194 t-l~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdq 272 (370)
T KOG1007|consen 194 T-LQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQ 272 (370)
T ss_pred c-EEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccce
Confidence 7 999999998887777633 6778899999999999999999999999999999999999999999999999 457
Q ss_pred EEEEEeCCCcEEEEEECCCCceeeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEee
Q psy3710 283 RLATASYKGTLIRVFDTGSGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQI 362 (424)
Q Consensus 283 ~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (424)
++++++.|.. |.+|...+-. .+..|.. +.+..+.... ........++ .-.+.++..
T Consensus 273 LiLs~~SDs~-V~Lsca~svS----------------SE~qi~~-~~dese~e~~-dseer~kpL~-----dg~l~tyde 328 (370)
T KOG1007|consen 273 LILSGGSDSA-VNLSCASSVS----------------SEQQIEF-EDDESESEDE-DSEERVKPLQ-----DGQLETYDE 328 (370)
T ss_pred EEEecCCCce-eEEEeccccc----------------ccccccc-ccccccCcch-hhHHhccccc-----ccccccccc
Confidence 8899999999 8888654321 1111111 1111000000 0000000011 111345677
Q ss_pred cCCCceEEEEecCCC-eEEEEeccCcEEEEEec
Q psy3710 363 PSDPPCICAFGADSN-SIIVICADGSYYKFMFN 394 (424)
Q Consensus 363 ~~~~~~~~~~s~~~~-~l~~~~~dg~v~~~~~~ 394 (424)
|...|..++||.-.. .+++-+.||.+.|=++.
T Consensus 329 hEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 329 HEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 888999999997555 56788999999987775
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-18 Score=132.41 Aligned_cols=217 Identities=14% Similarity=0.252 Sum_probs=161.1
Q ss_pred eEEEeecCCCCeEEEeeccCCeEEEEeCCCC---------CCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEE
Q psy3710 144 LCVLCPNSNNSLLAFPGRKSGHVHLVDLADP---------ERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 214 (424)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd 214 (424)
+.+-+++|.++++++ |..+|.|.+..+.+. +.++...++|.++|+.++|.. ..|++++ ||. |+-|.
T Consensus 13 vf~qa~sp~~~~l~a-gn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~-V~gw~ 87 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFA-GNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGL-VYGWE 87 (325)
T ss_pred HHHHhhCCcceEEEE-ecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-Cce-EEEee
Confidence 344577899999998 999999999988642 234445689999999999983 4666665 488 99998
Q ss_pred CCCcce------eeEEe----------cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEc
Q psy3710 215 TGSGQK------LNELR----------RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALN 278 (424)
Q Consensus 215 ~~~~~~------~~~~~----------~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 278 (424)
.+.... +.+.. ..++.+.+.|..+.++++| .|+.++.||+++++ ..+.+++|.+.|.+++--
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~-i~r~~rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGR-IQREYRGHTDYVHSVVGR 165 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCE-EEEEEcCCcceeeeeeec
Confidence 754321 11111 1267788899888888855 89999999999987 567889999999999985
Q ss_pred CCCCEEEEEeCCCcEEEEEECCCCceeeeecc--------------------CCcEEEEEeCCCcEEEEEcccccccccc
Q psy3710 279 QTGTRLATASYKGTLIRVFDTGSGQKLNELRR--------------------DSSYLCVSSDHGTVHVFSVDEAQKINKQ 338 (424)
Q Consensus 279 ~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~--------------------~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 338 (424)
.....+++|+.||+ +|+||.++++++..+.+ +..+|+.| ....+.+|.+.+.++....
T Consensus 166 ~~~~qilsG~EDGt-vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCG-gGp~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 166 NANGQILSGAEDGT-VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCG-GGPKLSLWHLRSSESTCVF 243 (325)
T ss_pred ccCcceeecCCCcc-EEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEec-CCCceeEEeccCCCceEEE
Confidence 55568999999999 99999999999987643 33455544 3568999999997764432
Q ss_pred ccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 339 SSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
+-. .++-.+.|-.| .+++++.-+.|.-|.+.
T Consensus 244 pip-----------------------a~v~~v~F~~d--~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 244 PIP-----------------------ARVHLVDFVDD--CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ecc-----------------------cceeEeeeecc--eEEEeccccceeeeeec
Confidence 211 12334555443 67778877888888884
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-18 Score=140.12 Aligned_cols=192 Identities=14% Similarity=0.179 Sum_probs=149.2
Q ss_pred ccccccCCeEEEEEcc-CCCEEEEEecCCcEEEEEECCCc-------ceeeEEecc---eeeeeecCCCCeEEEEeecCC
Q psy3710 180 DIAAHEAPLSCIALNQ-TGTRLATASYKGTLIRVFDTGSG-------QKLNELRRG---LCVLCPNSNNSLLAFPGRKSG 248 (424)
Q Consensus 180 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~~i~iwd~~~~-------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg 248 (424)
.+.+|.++|..++|+| +...|++||.|.+ |.||++..+ +++..+.+| +..+.++|....++++++.|+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~-v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTK-VMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCce-EEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 5679999999999999 5578999999999 999999765 344555555 667899999999999999999
Q ss_pred eEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeee-------------ccCCcEE
Q psy3710 249 HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNEL-------------RRDSSYL 315 (424)
Q Consensus 249 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-------------~~~~~~l 315 (424)
.|.+||+.+++..+. + .|...|.++.|+.||.+|++.+.|.. |||||.++++.+.+- -.+|.++
T Consensus 155 ~v~iWnv~tgeali~-l-~hpd~i~S~sfn~dGs~l~TtckDKk-vRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 155 TVSIWNVGTGEALIT-L-DHPDMVYSMSFNRDGSLLCTTCKDKK-VRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred eEEEEeccCCceeee-c-CCCCeEEEEEeccCCceeeeecccce-eEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence 999999999986544 3 39999999999999999999999999 999999999988764 3466644
Q ss_pred EEEe---CCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeec-CCCceEEEEecCCCeEEEEec-cCcEEE
Q psy3710 316 CVSS---DHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIP-SDPPCICAFGADSNSIIVICA-DGSYYK 390 (424)
Q Consensus 316 ~~~~---~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~~~~-dg~v~~ 390 (424)
-+|- ++..+-+||..+-+.-.-. .+.. ...|.-=.|.+|.+.|+.++. |+.|+-
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~---------------------~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRY 290 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIAL---------------------QELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRY 290 (472)
T ss_pred eeccccccccceeccCcccccCccee---------------------EEeccCCceEEeeecCCCCEEEEEecCCcceEE
Confidence 4443 4678899998774321100 1111 122333356788888876655 999999
Q ss_pred EEecCC
Q psy3710 391 FMFNSK 396 (424)
Q Consensus 391 ~~~~~~ 396 (424)
|++...
T Consensus 291 yEit~d 296 (472)
T KOG0303|consen 291 FEITNE 296 (472)
T ss_pred EEecCC
Confidence 999744
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-17 Score=131.30 Aligned_cols=241 Identities=14% Similarity=0.142 Sum_probs=171.1
Q ss_pred cccCCceEEEEECCCCC----eeEeecCCeEEEEeCCcCcccc---------cccccCCCeeeEEEecc-CceEEEEeCC
Q psy3710 7 STYKNGLLYAGFNQDQG----CFACGMEDGFRIYNCDPLKEKE---------RQDFTDGGLGHVEMLFR-CNYLALVGGG 72 (424)
Q Consensus 7 ~~h~~~V~~~~~s~~g~----~la~g~~~~i~iw~~~~~~~~~---------~~~~~~~~i~~~~~~~~-~~~l~~~~~~ 72 (424)
..|.-+++.+.|.|+.. -|...+.+.+|+|.+...+... ....+..++++..|..- .+++.+.+
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS-- 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS-- 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec--
Confidence 47889999999999862 3444555679999987432211 11224567888888764 45666666
Q ss_pred cCCCcCCCeEEEEECCCCcE----EEEEeecCCeEEEEecCCce-EEEe---eccEEEEeecCCCceeEEEeeCCCCCee
Q psy3710 73 THPKYPNNRVMIWDDLKKQV----VICLEFNAPVKGVRLRRDKI-VVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGL 144 (424)
Q Consensus 73 ~~~~~~d~~i~iwd~~~~~~----~~~~~~~~~v~~~~~~~~~~-~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 144 (424)
-|.+..|||++++.. .+.+.|..+|..++|...+. ++++ ||.+++||++........++........
T Consensus 171 -----iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pL 245 (364)
T KOG0290|consen 171 -----IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPL 245 (364)
T ss_pred -----ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcc
Confidence 589999999998733 33455999999999998763 4443 9999999998433333334433324457
Q ss_pred EEEeecCCC-CeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccC-CCEEEEEecCCcEEEEEECCCcceee
Q psy3710 145 CVLCPNSNN-SLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT-GTRLATASYKGTLIRVFDTGSGQKLN 222 (424)
Q Consensus 145 ~~~~~~~~~-~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd~~~~~~~~ 222 (424)
..++|+++. +++|+.+-....|.+.|++....++..+++|.+.|+.++|.|. ...|++++.|.. +.+||+.+.-.
T Consensus 246 lRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q-aliWDl~q~~~-- 322 (364)
T KOG0290|consen 246 LRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ-ALIWDLQQMPR-- 322 (364)
T ss_pred eeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce-EEEEecccccc--
Confidence 788888754 5666656777899999999988889999999999999999995 568999999999 99999965322
Q ss_pred EEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcC-CCCEEEEEeCCC
Q psy3710 223 ELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ-TGTRLATASYKG 291 (424)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~ 291 (424)
+....++..+ .-.+.|+.+.|++ .+..++.+....
T Consensus 323 ---------------------------------~~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai~~~kk 358 (364)
T KOG0290|consen 323 ---------------------------------ENGEDPILAY-TAGGEVNQIQWSSSQPDWIAICFGKK 358 (364)
T ss_pred ---------------------------------cCCCCchhhh-hccceeeeeeecccCCCEEEEEecCe
Confidence 0001122222 2456789999986 567888776654
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-18 Score=140.61 Aligned_cols=265 Identities=17% Similarity=0.145 Sum_probs=177.0
Q ss_pred cccccccCCceEEEEECCCCCeeEeecCCe-EEEEeCC--------c-----Cc---ccccccccCCCeeeEEEeccCce
Q psy3710 3 LGTSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCD--------P-----LK---EKERQDFTDGGLGHVEMLFRCNY 65 (424)
Q Consensus 3 ~~~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~--------~-----~~---~~~~~~~~~~~i~~~~~~~~~~~ 65 (424)
+..|..|...|+++.|+|+|+.||+|++++ +.+|... + .+ .......|...+..++|++++.+
T Consensus 58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~ 137 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF 137 (434)
T ss_pred eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce
Confidence 356889999999999999999999999999 9999865 2 00 01223447889999999999999
Q ss_pred EEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEE------
Q psy3710 66 LALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVF------ 135 (424)
Q Consensus 66 l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~------ 135 (424)
+++.+ -|+.+++||+..|.....+. |..-+..++|.|-++++++ |...+.+.+. ..+.++..
T Consensus 138 l~s~s-------~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~-~~~~~~~~~~~~m~ 209 (434)
T KOG1009|consen 138 LVSGS-------VDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK-LKQVIKRHGLDIMP 209 (434)
T ss_pred eeeee-------ccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeee-eeeeeeeeeeeEee
Confidence 99988 58999999999999999887 8999999999999988886 5555555553 11111111
Q ss_pred ---------------eeCCCCCeeEEEeecCCCCeEEEeecc----CC-----eEEEEeCCCCCCCCcccccccCCeEEE
Q psy3710 136 ---------------ETNPNPKGLCVLCPNSNNSLLAFPGRK----SG-----HVHLVDLADPERPPLDIAAHEAPLSCI 191 (424)
Q Consensus 136 ---------------~~~~~~~~~~~~~~~~~~~~l~~~~~~----dg-----~i~i~d~~~~~~~~~~~~~~~~~v~~~ 191 (424)
.....+.....++|+|+|.++++ .+. .+ ..++|+-....++...+.....+...+
T Consensus 210 ~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvt-Pag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lav 288 (434)
T KOG1009|consen 210 AKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVT-PAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAV 288 (434)
T ss_pred ecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEc-ccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEE
Confidence 11111112335678899998887 321 12 223444333333444444444555555
Q ss_pred EEccCCCEEEEEecCCcEEEEEECCCc---ceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccC
Q psy3710 192 ALNQTGTRLATASYKGTLIRVFDTGSG---QKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAH 268 (424)
Q Consensus 192 ~~~~~~~~l~~~~~d~~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~ 268 (424)
.|+| ..+.++.. +.+..+ | -+ ++++-...+.+++||.++.......-.-|
T Consensus 289 r~~p---------------Vy~elrp~~~~~~~~~l----------p-yr-lvfaiAt~~svyvydtq~~~P~~~v~nih 341 (434)
T KOG1009|consen 289 RFSP---------------VYYELRPLSSEKFLFVL----------P-YR-LVFAIATKNSVYVYDTQTLEPLAVVDNIH 341 (434)
T ss_pred Eeee---------------eEEEecccccccccccc----------c-cc-eEEEEeecceEEEeccccccceEEEeeee
Confidence 5554 11222110 001111 1 11 22334456789999988866555555578
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCce
Q psy3710 269 EAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK 304 (424)
Q Consensus 269 ~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~ 304 (424)
-..|+.++|++||..|+..|.||. ..+-.++..++
T Consensus 342 y~~iTDiaws~dg~~l~vSS~DGy-CS~vtfe~~el 376 (434)
T KOG1009|consen 342 YSAITDIAWSDDGSVLLVSSTDGF-CSLVTFEPWEL 376 (434)
T ss_pred eeeecceeecCCCcEEEEeccCCc-eEEEEEcchhc
Confidence 999999999999999999999998 77766665544
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-16 Score=139.47 Aligned_cols=305 Identities=14% Similarity=0.130 Sum_probs=191.1
Q ss_pred CeeE-eecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecC
Q psy3710 23 GCFA-CGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNA 100 (424)
Q Consensus 23 ~~la-~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 100 (424)
++++ +-.+++ |.+.|.++.+.+.........-..+.++++++++.+++ .|+.|.++|+.+++.+.++....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~-------rdg~vsviD~~~~~~v~~i~~G~ 78 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN-------RDGTVSVIDLATGKVVATIKVGG 78 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE-------TTSEEEEEETTSSSEEEEEE-SS
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc-------CCCeEEEEECCcccEEEEEecCC
Confidence 3443 344444 99999998887665554333334467899999998887 47999999999999999999888
Q ss_pred CeEEEEecCCceEEEe----eccEEEEeecCCCceeEEEeeCCC-----CCeeEEEeecCCCCeEEEeeccCCeEEEEeC
Q psy3710 101 PVKGVRLRRDKIVVVL----EGLIKVYTFIQCPQQLHVFETNPN-----PKGLCVLCPNSNNSLLAFPGRKSGHVHLVDL 171 (424)
Q Consensus 101 ~v~~~~~~~~~~~~~~----~~~i~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~ 171 (424)
...++++++|+++++. .+.+.++|.+ +.+.++.+..... ...+.++..+|....++++--+.+.|.+.|.
T Consensus 79 ~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~-tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 79 NPRGIAVSPDGKYVYVANYEPGTVSVIDAE-TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp EEEEEEE--TTTEEEEEEEETTEEEEEETT-T--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred CcceEEEcCCCCEEEEEecCCCceeEeccc-cccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence 8999999999987765 6899999986 7788877765432 2245667777888866653556689988898
Q ss_pred CCCCCCCcccccccCCeEEEEEccCCCEEEEE-ecCCcEEEEEECCCcceeeEEecc-----ee-eeeecCCCCeEEEE-
Q psy3710 172 ADPERPPLDIAAHEAPLSCIALNQTGTRLATA-SYKGTLIRVFDTGSGQKLNELRRG-----LC-VLCPNSNNSLLAFP- 243 (424)
Q Consensus 172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~~i~iwd~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~- 243 (424)
.....................|+|++++++.+ ..... |-++|.++++.+..+..+ .. .--.+|....+..+
T Consensus 158 ~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~-i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~ 236 (369)
T PF02239_consen 158 SDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK-IAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS 236 (369)
T ss_dssp TTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE-EEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE
T ss_pred ccccccceeeecccccccccccCcccceeeecccccce-eEEEeeccceEEEEeeccccccccccccccCCCcceEEeec
Confidence 76523222333345567889999999988765 44556 999999998887766432 01 11123333222221
Q ss_pred --------eecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEE----eCCCcEEEEEECCCCceee-----
Q psy3710 244 --------GRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATA----SYKGTLIRVFDTGSGQKLN----- 306 (424)
Q Consensus 244 --------~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~d~~~i~iwd~~~~~~~~----- 306 (424)
.-....+.+||..+.+ .++.+.....+ .-+..+|+++++... ...+. |.++|.++.+...
T Consensus 237 ~~~~~~~~~ig~~~v~v~d~~~wk-vv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~-v~viD~~tl~~~~~i~~~ 313 (369)
T PF02239_consen 237 GLGYFAIPLIGTDPVSVHDDYAWK-VVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADT-VQVIDKKTLKVVKTITPG 313 (369)
T ss_dssp BSSSSEEEEEE--TTT-STTTBTS-EEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT--EEEEECCGTEEEE-HHHH
T ss_pred cccceecccccCCccccchhhcCe-EEEEEECCCCc-ceeecCCCCccEEeeccCCCCCce-EEEEECcCcceeEEEecc
Confidence 1222233445555544 34455555555 778889999999998 33466 9999999986655
Q ss_pred --------eeccCCcEEEEEeCC--CcEEEEEccccccccccc
Q psy3710 307 --------ELRRDSSYLCVSSDH--GTVHVFSVDEAQKINKQS 339 (424)
Q Consensus 307 --------~~~~~~~~l~~~~~d--~~i~iw~~~~~~~~~~~~ 339 (424)
+|+++|+++..+..+ +.|.|||..+.+.+.+++
T Consensus 314 ~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 314 PGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp HT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 367899876655443 369999999988766544
|
... |
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.9e-18 Score=132.49 Aligned_cols=245 Identities=17% Similarity=0.132 Sum_probs=170.8
Q ss_pred CCeeeEEEec--cC-ceEEEEeCCcCCCcCCCeEEEEE--CCCCcEEEE--EeecCCeEEEEecCCc-----eEEEe-ec
Q psy3710 52 GGLGHVEMLF--RC-NYLALVGGGTHPKYPNNRVMIWD--DLKKQVVIC--LEFNAPVKGVRLRRDK-----IVVVL-EG 118 (424)
Q Consensus 52 ~~i~~~~~~~--~~-~~l~~~~~~~~~~~~d~~i~iwd--~~~~~~~~~--~~~~~~v~~~~~~~~~-----~~~~~-~~ 118 (424)
-.+.++.|+. +. .+++..+-.+. ..+.|.|-. .++++.+.. +.|+-+++.+.|.|+. .++|+ +.
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee---~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D 121 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEE---YNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD 121 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccc---cCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC
Confidence 3566677763 23 34554443221 235666654 345665544 3578899999999986 35565 77
Q ss_pred cEEEEeecCCCceeE---EEe---eCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCC--CCCcccccccCCeEE
Q psy3710 119 LIKVYTFIQCPQQLH---VFE---TNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE--RPPLDIAAHEAPLSC 190 (424)
Q Consensus 119 ~i~v~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~ 190 (424)
.+++|.+......+. .+. .......++++.|+.-...++.+++-|-+..|||++++. .....+.+|..+|..
T Consensus 122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~D 201 (364)
T KOG0290|consen 122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYD 201 (364)
T ss_pred eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeE
Confidence 999999863222111 121 122234577888876555555459999999999999851 235578899999999
Q ss_pred EEEccCC-CEEEEEecCCcEEEEEECCCcceeeEEe---c---ceeeeeecCCCCeEEE-EeecCCeEEEEeCCCCCCCC
Q psy3710 191 IALNQTG-TRLATASYKGTLIRVFDTGSGQKLNELR---R---GLCVLCPNSNNSLLAF-PGRKSGHVHLVDLADPERPP 262 (424)
Q Consensus 191 ~~~~~~~-~~l~~~~~d~~~i~iwd~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~-~~~~dg~i~i~d~~~~~~~~ 262 (424)
++|...+ +.+++.+.||. +|+||++..+....+. . +.-.+++++....+++ .+-....|.|.|++.+..++
T Consensus 202 Iaf~~~s~~~FASvgaDGS-vRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv 280 (364)
T KOG0290|consen 202 IAFLKGSRDVFASVGADGS-VRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV 280 (364)
T ss_pred EEeccCccceEEEecCCCc-EEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce
Confidence 9999855 57899999999 9999999765433322 2 1345667666655544 35567789999999999999
Q ss_pred eeeccCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEECCC
Q psy3710 263 LDIAAHEAPLSCIALNQT-GTRLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 263 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd~~~ 301 (424)
..+++|.+.|+.++|.|. ...|++++.|.. +.+||+.+
T Consensus 281 a~L~~H~a~VNgIaWaPhS~~hictaGDD~q-aliWDl~q 319 (364)
T KOG0290|consen 281 ARLRNHQASVNGIAWAPHSSSHICTAGDDCQ-ALIWDLQQ 319 (364)
T ss_pred ehhhcCcccccceEecCCCCceeeecCCcce-EEEEeccc
Confidence 999999999999999995 457777777777 77777763
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-17 Score=136.18 Aligned_cols=291 Identities=12% Similarity=0.135 Sum_probs=208.2
Q ss_pred ecCCeEEEEecCCceEEEe---eccEEEEeecC-----CCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEE
Q psy3710 98 FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQ-----CPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLV 169 (424)
Q Consensus 98 ~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~ 169 (424)
|.+.|.++.|+.+++++++ |..+.+|.+.+ ..+++. +..+.+...+.++.|+..+.++++ |..+++|.+-
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~-~~~~~H~SNIF~L~F~~~N~~~~S-G~~~~~VI~H 132 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG-VMEHPHRSNIFSLEFDLENRFLYS-GERWGTVIKH 132 (609)
T ss_pred hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce-eccCccccceEEEEEccCCeeEec-CCCcceeEee
Confidence 7889999999999999998 67899999853 223443 445556677999999998888887 9999999999
Q ss_pred eCCCCCCCCccccccc---CCeEEEEEccCCCEEEEEecCCcEEEEEECCCcc-eee-----EEecceeeeeecCCCCeE
Q psy3710 170 DLADPERPPLDIAAHE---APLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ-KLN-----ELRRGLCVLCPNSNNSLL 240 (424)
Q Consensus 170 d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~-~~~-----~~~~~~~~~~~~~~~~~~ 240 (424)
|+++. +.+..+ .|. +.|+.+..+|..+.|++.+.++. |.+||.+... ... ........+-|+|....+
T Consensus 133 DiEt~-qsi~V~-~~~~~~~~VY~m~~~P~DN~~~~~t~~~~-V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 133 DIETK-QSIYVA-NENNNRGDVYHMDQHPTDNTLIVVTRAKL-VSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred ecccc-eeeeee-cccCcccceeecccCCCCceEEEEecCce-EEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 99985 443333 343 48999999999999999999999 9999998765 221 222336778899999999
Q ss_pred EEEeecCCeEEEEeCCCCCCCCeeecc---C---CCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCcee-eeec----
Q psy3710 241 AFPGRKSGHVHLVDLADPERPPLDIAA---H---EAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL-NELR---- 309 (424)
Q Consensus 241 ~~~~~~dg~i~i~d~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~-~~~~---- 309 (424)
+++.+..+-+-+||.+.+..++..... . ...-.++.|+|+|..|.+--.... -.+||+-+..+. ..+.
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~-P~~~D~~S~R~~V~k~D~N~~ 288 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKC-PLYFDFISQRCFVLKSDHNPN 288 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCC-CEEeeeecccceeEeccCCCC
Confidence 999999999999999987755433221 1 222356789999998887766554 556676653322 1111
Q ss_pred -------------cCCcEEEEEeCCCcEEEEEcccccccccccccee-eeccCccccCCceeeEEeecCCCceEEEEecC
Q psy3710 310 -------------RDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLAS-ASFLPKYFSSSWSFCKFQIPSDPPCICAFGAD 375 (424)
Q Consensus 310 -------------~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 375 (424)
.+...+++|+.+-.|++|.+.......-...+.. ..-.|....-.-.+.-.+.|...+..+.|+|.
T Consensus 289 GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H 368 (609)
T KOG4227|consen 289 GYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQH 368 (609)
T ss_pred cceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCC
Confidence 1334588999999999999976332211111100 00111111111224457788999999999999
Q ss_pred CCeEEEEeccCcEEEEEec
Q psy3710 376 SNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 376 ~~~l~~~~~dg~v~~~~~~ 394 (424)
...|++.+-...+++|.-.
T Consensus 369 ~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 369 NNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred cceEeccchhhheeccccc
Confidence 9999999999999999643
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-17 Score=150.95 Aligned_cols=274 Identities=14% Similarity=0.186 Sum_probs=189.1
Q ss_pred CeEEEEecCCceEEEe-e--ccEEEEeecCCCceeEEEeeCCC-CCeeEEEee--cCCCCeEEEeeccCCeEEEEeCCCC
Q psy3710 101 PVKGVRLRRDKIVVVL-E--GLIKVYTFIQCPQQLHVFETNPN-PKGLCVLCP--NSNNSLLAFPGRKSGHVHLVDLADP 174 (424)
Q Consensus 101 ~v~~~~~~~~~~~~~~-~--~~i~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~l~~~~~~dg~i~i~d~~~~ 174 (424)
+...+.|+|=...+++ | ..|+|||.+ .++.+..+..... ...+..+.+ ..|..++++ |+.||.|+||+--..
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e-~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLt-as~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWE-KGRLLNGFDNGAFPDTRVSDLELINEQDDALLLT-ASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecc-cCceeccccCCCCCCCccceeeeecccchhheee-eccCceEEEeccccc
Confidence 3556777776644444 3 589999997 6666666654432 233444443 234455665 999999999975432
Q ss_pred C-C---CCcccc-------cccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc----eeeeeecCCCCe
Q psy3710 175 E-R---PPLDIA-------AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG----LCVLCPNSNNSL 239 (424)
Q Consensus 175 ~-~---~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~ 239 (424)
. + .+.-+. +..+.-.-+.|.....+|++++.-.. |+|||....+....++.+ ++++..+.....
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~-IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS-IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE-EEEEecccceeEeecccCCCccceeecccccCCc
Confidence 1 1 111111 11122244667776667777776777 999999998888877754 445555555667
Q ss_pred EEEEeecCCeEEEEeCCCCCC--CCeeeccCCCC--eEEEEEcCCCCE-EEEEeCCCcEEEEEECCCCceee--------
Q psy3710 240 LAFPGRKSGHVHLVDLADPER--PPLDIAAHEAP--LSCIALNQTGTR-LATASYKGTLIRVFDTGSGQKLN-------- 306 (424)
Q Consensus 240 ~~~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~-l~~~~~d~~~i~iwd~~~~~~~~-------- 306 (424)
++++|..||.|++||.+.... .+...+.|... |..+.+.+.|-- |++|+.+|. |++||++......
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCcccccceeeecc
Confidence 777799999999999997654 56677788887 999999987754 999999999 9999999742111
Q ss_pred ---------eeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCC
Q psy3710 307 ---------ELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSN 377 (424)
Q Consensus 307 ---------~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 377 (424)
...++...+|+|+. +.|+||++.. +.+...... |.+ .....+.+.+++|+|---
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n------~~F---------~~q~~gs~scL~FHP~~~ 1364 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYN------PGF---------MGQRIGSVSCLAFHPHRL 1364 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccC------ccc---------ccCcCCCcceeeecchhH
Confidence 12356778999988 9999999977 444433211 111 111235668999999999
Q ss_pred eEEEEeccCcEEEEEecC
Q psy3710 378 SIIVICADGSYYKFMFNS 395 (424)
Q Consensus 378 ~l~~~~~dg~v~~~~~~~ 395 (424)
.|++|+.|.+|.+|...+
T Consensus 1365 llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1365 LLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred hhhhccCCceEEEeecCC
Confidence 999999999999998764
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-17 Score=143.30 Aligned_cols=206 Identities=15% Similarity=0.123 Sum_probs=140.8
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCccccc-ccccCCCeeeEEEeccC-ceEEEEeCCcCCCcCCCeE
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKER-QDFTDGGLGHVEMLFRC-NYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~~~~~~~~~d~~i 82 (424)
|.||++.|+|++|+.+|.+|++|++|. +.|||.-..+.+.. .+.|...|.++.|.|.. +.+++.+. .|..|
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA------gDk~i 119 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA------GDKLI 119 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc------CcceE
Confidence 889999999999999999999999999 99999876666433 55689999999999965 44444443 38999
Q ss_pred EEEECCCC----------cEEEEEe-ecCCeEEEEecCCc---eEEEe-eccEEEEeecCCCceeEEE-------eeCCC
Q psy3710 83 MIWDDLKK----------QVVICLE-FNAPVKGVRLRRDK---IVVVL-EGLIKVYTFIQCPQQLHVF-------ETNPN 140 (424)
Q Consensus 83 ~iwd~~~~----------~~~~~~~-~~~~v~~~~~~~~~---~~~~~-~~~i~v~~~~~~~~~~~~~-------~~~~~ 140 (424)
+++|+... +....+. |...|..++..|++ .+.++ ||+|+-+|+++....-... ..+..
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 99998741 2223333 67888889988877 33344 9999999997532211111 11122
Q ss_pred CCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCC-----------------CCcc-ccccc-----------CCeEEE
Q psy3710 141 PKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER-----------------PPLD-IAAHE-----------APLSCI 191 (424)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~-----------------~~~~-~~~~~-----------~~v~~~ 191 (424)
.....++..+|...+++..|+.|-..++||.+...+ .+.. ..+|- .-++-+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 234556777887665544499999999999432100 0111 11221 125678
Q ss_pred EEccCCCEEEEEecCCcEEEEEECCCc
Q psy3710 192 ALNQTGTRLATASYKGTLIRVFDTGSG 218 (424)
Q Consensus 192 ~~~~~~~~l~~~~~d~~~i~iwd~~~~ 218 (424)
.|+|+|..|+..-.... |+++|+..+
T Consensus 280 tfnpNGtElLvs~~gEh-VYlfdvn~~ 305 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGEH-VYLFDVNED 305 (758)
T ss_pred EECCCCcEEEEeeCCeE-EEEEeecCC
Confidence 89999987766544444 899988654
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=128.68 Aligned_cols=244 Identities=14% Similarity=0.210 Sum_probs=160.8
Q ss_pred CceEEEEECCCCCeeEeecCCe-EEEEeCCcCcc----------cccccccCCCeeeEEEeccCceEEEEeCCcCCCcCC
Q psy3710 11 NGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKE----------KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPN 79 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~----------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d 79 (424)
..|.+-+++|.+++|++|...| |.+..+..... +.....|++++..+.|. .+.|++++ |
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g--------d 80 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG--------D 80 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc--------C
Confidence 4577778999999999999999 99988654321 11123355555555544 33333333 4
Q ss_pred CeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEeeccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEe
Q psy3710 80 NRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFP 159 (424)
Q Consensus 80 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (424)
|.|+=|..+....- .+.=.+|.+. ........+ ...+.++...|..+-+++
T Consensus 81 G~V~gw~W~E~~es-----------------------~~~K~lwe~~-~P~~~~~~e----vPeINam~ldP~enSi~~- 131 (325)
T KOG0649|consen 81 GLVYGWEWNEEEES-----------------------LATKRLWEVK-IPMQVDAVE----VPEINAMWLDPSENSILF- 131 (325)
T ss_pred ceEEEeeehhhhhh-----------------------ccchhhhhhc-CccccCccc----CCccceeEeccCCCcEEE-
Confidence 55555544322110 0111223322 111111111 123677888887777777
Q ss_pred eccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCe
Q psy3710 160 GRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSL 239 (424)
Q Consensus 160 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (424)
++.|+.++.||++++ +..+.+++|++-|.++.--.....+++|++||+ +++||.++++.+..+...
T Consensus 132 AgGD~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGt-vRvWd~kt~k~v~~ie~y------------ 197 (325)
T KOG0649|consen 132 AGGDGVIYQVDLEDG-RIQREYRGHTDYVHSVVGRNANGQILSGAEDGT-VRVWDTKTQKHVSMIEPY------------ 197 (325)
T ss_pred ecCCeEEEEEEecCC-EEEEEEcCCcceeeeeeecccCcceeecCCCcc-EEEEeccccceeEEeccc------------
Confidence 669999999999998 778899999999999998666678999999999 999999999988777522
Q ss_pred EEEEeecCCeEEEEeCCCCCCCCeeeccC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeecc--------
Q psy3710 240 LAFPGRKSGHVHLVDLADPERPPLDIAAH-EAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR-------- 310 (424)
Q Consensus 240 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-------- 310 (424)
+ . ...++.| ...|-+++-+ ..+|++|+... +.+|++++.++...|.-
T Consensus 198 --------------k-----~-~~~lRp~~g~wigala~~--edWlvCGgGp~--lslwhLrsse~t~vfpipa~v~~v~ 253 (325)
T KOG0649|consen 198 --------------K-----N-PNLLRPDWGKWIGALAVN--EDWLVCGGGPK--LSLWHLRSSESTCVFPIPARVHLVD 253 (325)
T ss_pred --------------c-----C-hhhcCcccCceeEEEecc--CceEEecCCCc--eeEEeccCCCceEEEecccceeEee
Confidence 0 0 1111223 4457777764 45888877665 89999999888887752
Q ss_pred -CCcEEEEEeCCCcEEEEEccc
Q psy3710 311 -DSSYLCVSSDHGTVHVFSVDE 331 (424)
Q Consensus 311 -~~~~l~~~~~d~~i~iw~~~~ 331 (424)
..+.+++++..+.+.-|.+..
T Consensus 254 F~~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 254 FVDDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred eecceEEEeccccceeeeeecc
Confidence 455677787778888888766
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=9e-17 Score=145.07 Aligned_cols=317 Identities=14% Similarity=0.179 Sum_probs=214.5
Q ss_pred cccCCceEEEEECCCCCeeEeecCCe-EEEEeCCc--Ccc--cccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCe
Q psy3710 7 STYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDP--LKE--KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNR 81 (424)
Q Consensus 7 ~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~--~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 81 (424)
..|.-.++|.++||.++++|+|..+| |.+|.--. ... ......|...|.++.|+++|.+|++.| ..+.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG-------~E~V 274 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG-------REGV 274 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecc-------cceE
Confidence 45777899999999999999999999 99998433 211 222444778999999999999998888 5799
Q ss_pred EEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCC---------CeeEEEee
Q psy3710 82 VMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNP---------KGLCVLCP 149 (424)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 149 (424)
+.+|.+++++....-+..++|..+.++||+...+. |+.|.+.... +.....++.+...+ .-...+++
T Consensus 275 Lv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~-dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i 353 (792)
T KOG1963|consen 275 LVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS-DLEIKSTISGIKPPTPSTKTRPQSLTTGVSI 353 (792)
T ss_pred EEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc-chhhhhhccCccCCCccccccccccceeEEE
Confidence 99999999993333347899999999999966654 9999999874 44444333332211 12346677
Q ss_pred cCCCCeEEEeeccCCeEEEEeCCCCCCCCcccc-----------cccCCeEEEEEccCCCEEEEEec--------CCc-E
Q psy3710 150 NSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA-----------AHEAPLSCIALNQTGTRLATASY--------KGT-L 209 (424)
Q Consensus 150 ~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~--------d~~-~ 209 (424)
+|--+.++. .+..|.|.+||+.+. ..+..+. .+.-.++.++.+..|.+++|.-. ||. .
T Consensus 354 dpr~~~~vl-n~~~g~vQ~ydl~td-~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~ 431 (792)
T KOG1963|consen 354 DPRTNSLVL-NGHPGHVQFYDLYTD-STIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS 431 (792)
T ss_pred cCCCCceee-cCCCceEEEEecccc-ceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEE
Confidence 886666666 889999999999876 3333332 12334677888888999888642 221 2
Q ss_pred EEEEECCCcceeeEE----ecc----eeeeee-cCCCCeEEEEeecCCeEEEEeCCCCCCCC---------eeeccCCCC
Q psy3710 210 IRVFDTGSGQKLNEL----RRG----LCVLCP-NSNNSLLAFPGRKSGHVHLVDLADPERPP---------LDIAAHEAP 271 (424)
Q Consensus 210 i~iwd~~~~~~~~~~----~~~----~~~~~~-~~~~~~~~~~~~~dg~i~i~d~~~~~~~~---------~~~~~~~~~ 271 (424)
+++|-......-..+ ..+ ..+.++ ++.....+++++.||.+++|-+...+... ..-.-|..+
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~ 511 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTP 511 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCc
Confidence 788876544333222 222 233333 33344378889999999999985433111 111137889
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEECCC-Cceeeeecc--------------CCcEEEEEeCCCcEEEEEccccccc
Q psy3710 272 LSCIALNQTGTRLATASYKGTLIRVFDTGS-GQKLNELRR--------------DSSYLCVSSDHGTVHVFSVDEAQKI 335 (424)
Q Consensus 272 v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~-~~~~~~~~~--------------~~~~l~~~~~d~~i~iw~~~~~~~~ 335 (424)
+++++|+.||..| +.+.+++ |.+||..+ .+....+.. -....+.....+.+.+|++.+....
T Consensus 512 i~a~~fs~dGsll-a~s~~~~-Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~ 588 (792)
T KOG1963|consen 512 ITALCFSQDGSLL-AVSFDDT-ITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLI 588 (792)
T ss_pred ccchhhcCCCcEE-EEecCCE-EEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhhhhhee
Confidence 9999999999554 5566667 99999998 433333221 1122333445678999999886543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-17 Score=149.77 Aligned_cols=235 Identities=10% Similarity=0.073 Sum_probs=159.8
Q ss_pred EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCce
Q psy3710 33 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKI 112 (424)
Q Consensus 33 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (424)
|.+||.+..... ....+...+....|+|+++.+++++... .+..|++||+.+++........+....++|+||+.
T Consensus 186 i~i~d~dg~~~~-~lt~~~~~v~~p~wSPDG~~la~~s~~~----~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 186 VRVADYDGFNQF-IVNRSSQPLMSPAWSPDGSKLAYVSFEN----KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGS 260 (429)
T ss_pred EEEECCCCCCce-EeccCCCccccceEcCCCCEEEEEEecC----CCcEEEEEeCCCCceEEEecCCCccCceeECCCCC
Confidence 999998765532 2344567789999999999999987432 24589999998886544333444556789999997
Q ss_pred EEEe----eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCe
Q psy3710 113 VVVL----EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPL 188 (424)
Q Consensus 113 ~~~~----~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 188 (424)
.++. ++.+.+|.++........+..+. .......|+|||+.|++++..+|...+|+++........+ .+..
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~--~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~-- 335 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGTPSQLTSGA--GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG-- 335 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCCeEeeccCC--CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--
Confidence 6553 56666664432233344444433 2356789999999988756678888998876432323323 3333
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEec-ceeeeeecCCCCeEEEEeecCCeEEEEeCCC-CCCCCeeec
Q psy3710 189 SCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR-GLCVLCPNSNNSLLAFPGRKSGHVHLVDLAD-PERPPLDIA 266 (424)
Q Consensus 189 ~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~-~~~~~~~~~ 266 (424)
....|+|+|++|+..+.++ +.+||+.+++....... ......++|++..+++ ++.++...+|++.. .......+.
T Consensus 336 ~~~~~SpDG~~ia~~~~~~--i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~-~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 336 YSAQISADGKTLVMINGDN--VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIY-SSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CCccCCCCCCEEEEEcCCC--EEEEECCCCCeEEecCCCCCCCceECCCCCEEEE-EEcCCCceEEEEEECCCCceEEcc
Confidence 4678999999998888765 66799988865432221 2345679999998888 45577777776532 223456666
Q ss_pred cCCCCeEEEEEcCC
Q psy3710 267 AHEAPLSCIALNQT 280 (424)
Q Consensus 267 ~~~~~v~~~~~~~~ 280 (424)
.|.+.+...+|+|-
T Consensus 413 ~~~g~~~~p~wsp~ 426 (429)
T PRK01742 413 GSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCCcccCCC
Confidence 78888999999984
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=145.32 Aligned_cols=263 Identities=17% Similarity=0.231 Sum_probs=209.5
Q ss_pred CceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC
Q psy3710 11 NGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK 89 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~ 89 (424)
..-..+.|+.+|+.|+.|+..| +..+|..+.+....... ...|..+.|..+..++|++- .+.++||| ..
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ--------K~y~yvYD-~~ 199 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ--------KKYVYVYD-NN 199 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh--------hceEEEec-CC
Confidence 3456789999999999999999 99999999888665555 66788999999999998887 68999999 47
Q ss_pred CcEEEEEeecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeE
Q psy3710 90 KQVVICLEFNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHV 166 (424)
Q Consensus 90 ~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i 166 (424)
|..++.++....|..+.|-|...++++ .|.++--|+. .++.+..+....+. +..++-+|-+..+-+ |..+|+|
T Consensus 200 GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS-~GklVa~~~t~~G~--~~vm~qNP~NaVih~-GhsnGtV 275 (545)
T KOG1272|consen 200 GTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVS-TGKLVASIRTGAGR--TDVMKQNPYNAVIHL-GHSNGTV 275 (545)
T ss_pred CcEEeehhhcCchhhhcccchhheeeecccCCceEEEeec-hhhhhHHHHccCCc--cchhhcCCccceEEE-cCCCceE
Confidence 888999988889999999999988876 6889999997 88888888776655 555777888888887 9999999
Q ss_pred EEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc--eeeeeecCCCCeEEEEe
Q psy3710 167 HLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG--LCVLCPNSNNSLLAFPG 244 (424)
Q Consensus 167 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 244 (424)
.+|..... .++..+..|.++|.++++.++|++++|.+.|.. ++|||++....+.++..+ ...++++..+ +++ .
T Consensus 276 SlWSP~sk-ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA-~ 350 (545)
T KOG1272|consen 276 SLWSPNSK-EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLA-L 350 (545)
T ss_pred EecCCCCc-chHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeeccccccceeecCCCcccccccccc--cee-e
Confidence 99999886 788888899999999999999999999999999 999999998877766654 3344444433 333 5
Q ss_pred ecCCeEEEEeCCCC-C---CCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCc
Q psy3710 245 RKSGHVHLVDLADP-E---RPPLDIAAHEAPLSCIALNQTGTRLATASYKGT 292 (424)
Q Consensus 245 ~~dg~i~i~d~~~~-~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 292 (424)
+....+.||.-... . ..........++|..+.|.|-...|-.|-..|-
T Consensus 351 ~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 351 SYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred ecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 66778888853322 1 111111123458999999998888888777764
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.8e-17 Score=145.72 Aligned_cols=254 Identities=15% Similarity=0.129 Sum_probs=182.0
Q ss_pred eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCC-Cc----ccccccCCeEEE
Q psy3710 117 EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERP-PL----DIAAHEAPLSCI 191 (424)
Q Consensus 117 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~-~~----~~~~~~~~v~~~ 191 (424)
++.+.+|+++....+...+... ..+.++.++|....+++.|..+|.|.+||++.+... .. ....|..++..+
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~---s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESP---SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred CceEEEEecCCCCCceEEEecC---CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 3579999998555555555443 457888888887777776999999999999986442 22 233688999999
Q ss_pred EEccCCC--EEEEEecCCcEEEEEECCCcce-eeE-----E---------ecceeeeeecCCCCeEEEEeecCCeEEEEe
Q psy3710 192 ALNQTGT--RLATASYKGTLIRVFDTGSGQK-LNE-----L---------RRGLCVLCPNSNNSLLAFPGRKSGHVHLVD 254 (424)
Q Consensus 192 ~~~~~~~--~l~~~~~d~~~i~iwd~~~~~~-~~~-----~---------~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d 254 (424)
.|..+.. -+++++.||. |..|+++.-.. ... . ......+.|.+.....++.|+++|.|+--+
T Consensus 298 vW~~~~~~~~f~s~ssDG~-i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~ 376 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGS-ICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGC 376 (555)
T ss_pred EEeccCCCCceEEEecCCc-EeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEe
Confidence 9977544 4999999999 99998875422 110 0 122677889998888888899999999855
Q ss_pred CCCCCC-------CCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC-CCceeee------------ecc-CCc
Q psy3710 255 LADPER-------PPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG-SGQKLNE------------LRR-DSS 313 (424)
Q Consensus 255 ~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~-~~~~~~~------------~~~-~~~ 313 (424)
....+. ....+..|.++|+++.++|=+..++..+.|.+ ++||... ...++.. |+| ...
T Consensus 377 r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 377 RKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPA 455 (555)
T ss_pred ccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce-eEeccccCCCCcchhhhhccceeeeeEEcCcCce
Confidence 443332 23355678999999999996655555555888 9999987 4444332 444 345
Q ss_pred EEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEe
Q psy3710 314 YLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMF 393 (424)
Q Consensus 314 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~ 393 (424)
.++++..||.|.|||+.....-.. ++...+....+.+.|+++|+.|++|...|.+++|++
T Consensus 456 vF~~~d~~G~l~iWDLl~~~~~Pv--------------------~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLLQDDEEPV--------------------LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred EEEEEcCCCceehhhhhccccCCc--------------------ccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 678888899999999977432111 111112334556789999999999999999999999
Q ss_pred cC
Q psy3710 394 NS 395 (424)
Q Consensus 394 ~~ 395 (424)
.+
T Consensus 516 ~~ 517 (555)
T KOG1587|consen 516 SE 517 (555)
T ss_pred Cc
Confidence 63
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-18 Score=143.39 Aligned_cols=290 Identities=12% Similarity=0.124 Sum_probs=208.9
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCccccc-ccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeE
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKER-QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 82 (424)
.|.+|.+.|+.+.|+..|..|++|+++. |.+||...+..... ...|...|..-.|.|...-.-.++.+ .||++
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s-----~dgqv 211 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS-----RDGQV 211 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc-----ccCce
Confidence 4889999999999999999999999999 99999988877443 45578888888888876443333333 58999
Q ss_pred EEEECC-CCcEE---EEEeecCCeEEEEecCCceEEE---e-eccEEEEeecCCCceeEEE--eeCCCC--CeeEEEeec
Q psy3710 83 MIWDDL-KKQVV---ICLEFNAPVKGVRLRRDKIVVV---L-EGLIKVYTFIQCPQQLHVF--ETNPNP--KGLCVLCPN 150 (424)
Q Consensus 83 ~iwd~~-~~~~~---~~~~~~~~v~~~~~~~~~~~~~---~-~~~i~v~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~ 150 (424)
++=.+. ++.+. +...|.++|..++.-|+..... . |+.+.-+|++ ...+...+ +.+..+ +....++.+
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr-~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR-QDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeec-cCCccceeeeeccCCccceeeeeEecC
Confidence 987654 33333 2233899999999988763332 2 8899999987 33332222 222222 466788888
Q ss_pred CCCCeEEEeeccCCeEEEEeCCCCCCC-----Ccccc------cccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCc-
Q psy3710 151 SNNSLLAFPGRKSGHVHLVDLADPERP-----PLDIA------AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG- 218 (424)
Q Consensus 151 ~~~~~l~~~~~~dg~i~i~d~~~~~~~-----~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~- 218 (424)
|.+.+.+.+|+.|..+++||.+.-.+. +..+- ...-.|++++|+.++.-|+++..|-. |+++.-..+
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~-IYLF~~~~~~ 369 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED-IYLFNKSMGD 369 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc-eEEecccccc
Confidence 888755444999999999998754221 12222 22456899999988877777777887 999954322
Q ss_pred -----------ceeeE-Eecc-----eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCC
Q psy3710 219 -----------QKLNE-LRRG-----LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTG 281 (424)
Q Consensus 219 -----------~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 281 (424)
..+.. +++| +..+-|......++++|++-|.|.||+-.+++ .++.+.+...-|+||.-+|--
T Consensus 370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e-ii~~MegDr~VVNCLEpHP~~ 448 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE-IIRFMEGDRHVVNCLEPHPHL 448 (559)
T ss_pred CCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH-HHHHhhcccceEeccCCCCCC
Confidence 11222 4554 44556666667788889999999999998876 355555666699999999999
Q ss_pred CEEEEEeCCCcEEEEEECCCCc
Q psy3710 282 TRLATASYKGTLIRVFDTGSGQ 303 (424)
Q Consensus 282 ~~l~~~~~d~~~i~iwd~~~~~ 303 (424)
..||+++-|.. |+||...+.+
T Consensus 449 PvLAsSGid~D-VKIWTP~~~e 469 (559)
T KOG1334|consen 449 PVLASSGIDHD-VKIWTPLTAE 469 (559)
T ss_pred chhhccCCccc-eeeecCCccc
Confidence 99999999999 9999885543
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-15 Score=129.81 Aligned_cols=322 Identities=14% Similarity=0.143 Sum_probs=215.6
Q ss_pred CCceEEEEECCCCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcC--CC-cCCCeEEEEE
Q psy3710 10 KNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTH--PK-YPNNRVMIWD 86 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~--~~-~~d~~i~iwd 86 (424)
..+++..++|++|+++|.+.++.++|++......+..... . .+..+.|+|.+++|.+----.. +. -..-.+.+|+
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~-~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVEL-K-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CCcceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEecc-c-eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 4457788999999999999998899999888764322222 3 7889999999999876421100 00 0135678999
Q ss_pred CCCCcEEEEEee-cCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCC--CCeEEE---
Q psy3710 87 DLKKQVVICLEF-NAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSN--NSLLAF--- 158 (424)
Q Consensus 87 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~--- 158 (424)
++++.....+.. ...-++..|+.|..+.+- .+.+++|++.........+.. .++..+.++|. ...+++
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~----~~i~~f~lSpgp~~~~vAvyvP 187 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSV----SGITMLSLSPGPEPPFVAVYVP 187 (566)
T ss_pred eccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeec----cceeeEEecCCCCCceEEEEcc
Confidence 999666666662 222278999999877774 899999998643333344432 23555555554 444544
Q ss_pred -eeccCCeEEEEeCCCCC--CCCcccccccCCeEEEEEccCCCEE-EEE--ecCC---------cEEEEEECCCcceeeE
Q psy3710 159 -PGRKSGHVHLVDLADPE--RPPLDIAAHEAPLSCIALNQTGTRL-ATA--SYKG---------TLIRVFDTGSGQKLNE 223 (424)
Q Consensus 159 -~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l-~~~--~~d~---------~~i~iwd~~~~~~~~~ 223 (424)
.++.-+.|+||...... +.+..-.-....=..+.|++-|.-| +.+ .-|. + +++.++....+.-.
T Consensus 188 e~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~-Lyll~t~g~s~~V~ 266 (566)
T KOG2315|consen 188 EKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQT-LYLLATQGESVSVP 266 (566)
T ss_pred CCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccce-EEEEEecCceEEEe
Confidence 24566789999887321 1111111112333567888876533 222 2232 4 88888875555555
Q ss_pred Ee--cceeeeeecCCCCeEEEE-eecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 224 LR--RGLCVLCPNSNNSLLAFP-GRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 224 ~~--~~~~~~~~~~~~~~~~~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
+. +++..++|++++..++++ |..-..+.|||++..- .+.-..++=+++-|+|.|++++.++-+.-
T Consensus 267 L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~----v~df~egpRN~~~fnp~g~ii~lAGFGNL-------- 334 (566)
T KOG2315|consen 267 LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP----VFDFPEGPRNTAFFNPHGNIILLAGFGNL-------- 334 (566)
T ss_pred cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE----eEeCCCCCccceEECCCCCEEEEeecCCC--------
Confidence 54 668999999999877664 6677889999987522 22245667788889999998888877653
Q ss_pred CCceeeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEE
Q psy3710 301 SGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSII 380 (424)
Q Consensus 301 ~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 380 (424)
.|.|.|||+.+.+++.+... ...+.+.|+|||++++
T Consensus 335 --------------------~G~mEvwDv~n~K~i~~~~a------------------------~~tt~~eW~PdGe~fl 370 (566)
T KOG2315|consen 335 --------------------PGDMEVWDVPNRKLIAKFKA------------------------ANTTVFEWSPDGEYFL 370 (566)
T ss_pred --------------------CCceEEEeccchhhcccccc------------------------CCceEEEEcCCCcEEE
Confidence 57788999988666554332 2345789999999999
Q ss_pred EEec------cCcEEEEEec
Q psy3710 381 VICA------DGSYYKFMFN 394 (424)
Q Consensus 381 ~~~~------dg~v~~~~~~ 394 (424)
|++. |+.++||++.
T Consensus 371 TATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 371 TATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred EEeccccEEecCCeEEEEec
Confidence 8876 7899999996
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=129.72 Aligned_cols=234 Identities=15% Similarity=0.202 Sum_probs=171.9
Q ss_pred ceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccc-cccCCeEEEEEccCCCEEEEEecCCc
Q psy3710 130 QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA-AHEAPLSCIALNQTGTRLATASYKGT 208 (424)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~ 208 (424)
.+...++.+. ..+.++.|..+++ |.. |...|.|.+|++.+. .....++ .|...|+.+.--|+ ..+.+-+.|..
T Consensus 5 dP~fvLRp~~--~~v~s~~fqa~~r-L~s-g~~~G~V~~w~lqt~-r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~ 78 (323)
T KOG0322|consen 5 DPFFVLRPHS--SSVTSVLFQANER-LMS-GLSVGIVKMWVLQTE-RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPL 78 (323)
T ss_pred CCeeEecccc--chheehhhccchh-hhc-ccccceEEEEEeecC-ccchhhhhhccceeeceeecCC-cchhhcCCCce
Confidence 3445555444 4467777776665 555 999999999999986 5666666 67888999998887 57888899999
Q ss_pred EEEEEECCCcceee--------------E-------------Ee-----------cc----------------eeeeeec
Q psy3710 209 LIRVFDTGSGQKLN--------------E-------------LR-----------RG----------------LCVLCPN 234 (424)
Q Consensus 209 ~i~iwd~~~~~~~~--------------~-------------~~-----------~~----------------~~~~~~~ 234 (424)
+.+|++.-+..+. . ++ .+ -..++..
T Consensus 79 -L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~ 157 (323)
T KOG0322|consen 79 -LILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD 157 (323)
T ss_pred -EEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence 9999986522110 0 00 00 0112222
Q ss_pred ----CCCCeEEEEeecCCeEEEEeCCCCCC---------CCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCC
Q psy3710 235 ----SNNSLLAFPGRKSGHVHLVDLADPER---------PPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 235 ----~~~~~~~~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~ 301 (424)
.....++++|.++|.+.+||+.++.. .......|..+|.++.|.+.-..=++++.+.. +..|++..
T Consensus 158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk-l~~~Sl~~ 236 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK-LVMYSLNH 236 (323)
T ss_pred ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc-ceeeeecc
Confidence 22345677799999999999998632 12233479999999999986666677888877 88888764
Q ss_pred C--ce--------------eeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCC
Q psy3710 302 G--QK--------------LNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSD 365 (424)
Q Consensus 302 ~--~~--------------~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (424)
. .+ -.+++||++.+|+++.|+.||||..++.+.+.- .+.|.+
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAV----------------------LkyHsa 294 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAV----------------------LKYHSA 294 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhh----------------------hhhhhc
Confidence 2 21 114679999999999999999999999776543 344667
Q ss_pred CceEEEEecCCCeEEEEeccCcEEEEEe
Q psy3710 366 PPCICAFGADSNSIIVICADGSYYKFMF 393 (424)
Q Consensus 366 ~~~~~~~s~~~~~l~~~~~dg~v~~~~~ 393 (424)
.+.+++|+|+.+.+|.++.|++|.+|++
T Consensus 295 gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 295 GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 8899999999999999999999999986
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-16 Score=126.76 Aligned_cols=223 Identities=34% Similarity=0.523 Sum_probs=162.1
Q ss_pred CeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccC------CeEEEEeCC
Q psy3710 101 PVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKS------GHVHLVDLA 172 (424)
Q Consensus 101 ~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d------g~i~i~d~~ 172 (424)
...+++|+.|...++. +...++|+.++ .+.....+.......+..+-+ -.++++..|+.+ ..|.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P-~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDP-FKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCc-hhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 3455889888755543 88999999873 222111222222223333333 234555546544 579999944
Q ss_pred CCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECC-CcceeeEEec-----ceeeeeecCCCCeEEEEeec
Q psy3710 173 DPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG-SGQKLNELRR-----GLCVLCPNSNNSLLAFPGRK 246 (424)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 246 (424)
.. .++.++ ....+|.++.+.++ .+++.-. +. |++|... +.+.++.+.. +..+++-......+++-|..
T Consensus 84 k~-~~i~el-~f~~~I~~V~l~r~--riVvvl~-~~-I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k 157 (346)
T KOG2111|consen 84 KE-RCIIEL-SFNSEIKAVKLRRD--RIVVVLE-NK-IYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFK 157 (346)
T ss_pred cC-cEEEEE-EeccceeeEEEcCC--eEEEEec-Ce-EEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCc
Confidence 32 444444 45789999999875 4555544 45 9999987 4566665542 34555555666778888889
Q ss_pred CCeEEEEeCCCCCC-CCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeee--------------eccC
Q psy3710 247 SGHVHLVDLADPER-PPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE--------------LRRD 311 (424)
Q Consensus 247 dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~--------------~~~~ 311 (424)
-|.|+|-|+...+. +...+.+|.+.|.|++.+.+|..+||+|..|+.|||||..+|+.+.+ |+|+
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 99999999988664 45778899999999999999999999999999999999999999887 4689
Q ss_pred CcEEEEEeCCCcEEEEEcccc
Q psy3710 312 SSYLCVSSDHGTVHVFSVDEA 332 (424)
Q Consensus 312 ~~~l~~~~~d~~i~iw~~~~~ 332 (424)
+.+||++|+-|+++||.+...
T Consensus 238 ~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred ccEEEEEcCCCeEEEEEeecC
Confidence 999999999999999999873
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-17 Score=147.13 Aligned_cols=208 Identities=16% Similarity=0.179 Sum_probs=148.6
Q ss_pred CCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecC---CcEEEEEECCCcce--eeEEecceeeeeecCCC
Q psy3710 163 SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK---GTLIRVFDTGSGQK--LNELRRGLCVLCPNSNN 237 (424)
Q Consensus 163 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~ 237 (424)
+..|.+||.... ....+..|...+.+++|+|||+.|+..+.+ .. |++||+.+++. +..++.+....+|+|++
T Consensus 183 ~~~i~i~d~dg~--~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~-i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG 259 (429)
T PRK01742 183 PYEVRVADYDGF--NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQ-LVVHDLRSGARKVVASFRGHNGAPAFSPDG 259 (429)
T ss_pred eEEEEEECCCCC--CceEeccCCCccccceEcCCCCEEEEEEecCCCcE-EEEEeCCCCceEEEecCCCccCceeECCCC
Confidence 468999998764 345566788889999999999999987654 36 99999988753 44445556678999999
Q ss_pred CeEEEEeecCCeEEEE--eCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEECCC--Cce--------
Q psy3710 238 SLLAFPGRKSGHVHLV--DLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS-YKGTLIRVFDTGS--GQK-------- 304 (424)
Q Consensus 238 ~~~~~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~~i~iwd~~~--~~~-------- 304 (424)
..++++...+|.+.|| |+.++. ...+..+...+...+|+|||+.|+.++ .++. .+||++.. +..
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~-~~I~~~~~~~~~~~~l~~~~~ 336 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGS-PQVYRMSASGGGASLVGGRGY 336 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCC-ceEEEEECCCCCeEEecCCCC
Confidence 9999977778865555 655443 344556777788999999999877665 4676 78886542 211
Q ss_pred eeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEec
Q psy3710 305 LNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICA 384 (424)
Q Consensus 305 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 384 (424)
...++|+|++++..+.++ +.+||+.+++....... .......|+|||++|++++.
T Consensus 337 ~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~------------------------~~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 337 SAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST------------------------FLDESPSISPNGIMIIYSST 391 (429)
T ss_pred CccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC------------------------CCCCCceECCCCCEEEEEEc
Confidence 124789999998887764 56699988653211000 00124579999999999999
Q ss_pred cCcEEEEEec-CCcceee
Q psy3710 385 DGSYYKFMFN-SKGECWR 401 (424)
Q Consensus 385 dg~v~~~~~~-~~~~~~~ 401 (424)
+|...+|.+. ..|...+
T Consensus 392 ~g~~~~l~~~~~~G~~~~ 409 (429)
T PRK01742 392 QGLGKVLQLVSADGRFKA 409 (429)
T ss_pred CCCceEEEEEECCCCceE
Confidence 9999888764 2455444
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-16 Score=127.94 Aligned_cols=221 Identities=30% Similarity=0.487 Sum_probs=160.6
Q ss_pred CeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeecc-CCeEEEEeCCCCCCC
Q psy3710 101 PVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRK-SGHVHLVDLADPERP 177 (424)
Q Consensus 101 ~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-dg~i~i~d~~~~~~~ 177 (424)
.+..+.|+.+...++. ....++|+..+..+ ..........++.+-|+. .++|..+-. ...+++++.+.. ..
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k---~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~-~~ 80 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDGYKIFSCSPFEK---CFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKK-TT 80 (391)
T ss_pred ceeeeeeccceeEEEccCCCceeEEecCchHH---hhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccC-ce
Confidence 4555667777766664 45677887753333 222222334566677764 345542332 345888888764 22
Q ss_pred CcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc------eeeeeecCCCCeEEEEee-cCCeE
Q psy3710 178 PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG------LCVLCPNSNNSLLAFPGR-KSGHV 250 (424)
Q Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~dg~i 250 (424)
+-.+ -...+|.++.++. +.|+.+=.+. |+|||+++.+.+.++..- ...++++..+.++++-++ ..|.|
T Consensus 81 ICe~-~fpt~IL~VrmNr--~RLvV~Lee~--IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 81 ICEI-FFPTSILAVRMNR--KRLVVCLEES--IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEE-ecCCceEEEEEcc--ceEEEEEccc--EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 2222 2457788999876 4566655544 999999999998877532 444555566668888665 46899
Q ss_pred EEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeee--------------ccCCcEEE
Q psy3710 251 HLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNEL--------------RRDSSYLC 316 (424)
Q Consensus 251 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~--------------~~~~~~l~ 316 (424)
++||..+-+ +...+..|++++-+++|+++|.+|||+|..|+.|||+.+.+|+.+.+| +|++++|+
T Consensus 156 ~l~d~~nl~-~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~ 234 (391)
T KOG2110|consen 156 VLFDTINLQ-PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLA 234 (391)
T ss_pred EEEEcccce-eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence 999999866 466778999999999999999999999999999999999999998875 57999999
Q ss_pred EEeCCCcEEEEEccccc
Q psy3710 317 VSSDHGTVHVFSVDEAQ 333 (424)
Q Consensus 317 ~~~~d~~i~iw~~~~~~ 333 (424)
+.+..++|+||.++...
T Consensus 235 ~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 235 ASSNTETVHIFKLEKVS 251 (391)
T ss_pred EecCCCeEEEEEecccc
Confidence 99999999999998844
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-16 Score=144.03 Aligned_cols=261 Identities=14% Similarity=0.118 Sum_probs=186.1
Q ss_pred EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcE--EE-----EEeecCCeEEE
Q psy3710 33 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQV--VI-----CLEFNAPVKGV 105 (424)
Q Consensus 33 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~--~~-----~~~~~~~v~~~ 105 (424)
+.+|++.........-.....+.++.|+|....++++|.. +|+|.+||+..+.. .. ...|..++..+
T Consensus 224 ~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y------~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 224 LLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCY------NGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred EEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeecc------CceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 8899987763332222246789999999988888777754 79999999987655 22 22378899999
Q ss_pred EecCCc----eEEEe-eccEEEEeecCCCceeEEEe----e-----CCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeC
Q psy3710 106 RLRRDK----IVVVL-EGLIKVYTFIQCPQQLHVFE----T-----NPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDL 171 (424)
Q Consensus 106 ~~~~~~----~~~~~-~~~i~v~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~ 171 (424)
.|..+- .+..+ ||.|..|+++.-..+..... . ......+.++.|.+.....++.|++.|.|.--+.
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r 377 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR 377 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence 996432 22233 99999998863222221111 1 1223456778887655544444999999987433
Q ss_pred CCC---C----CCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECC-CcceeeEEecc---eeeeeecCCCCeE
Q psy3710 172 ADP---E----RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG-SGQKLNELRRG---LCVLCPNSNNSLL 240 (424)
Q Consensus 172 ~~~---~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~-~~~~~~~~~~~---~~~~~~~~~~~~~ 240 (424)
... . +....+..|.++|+++.++|-+..+...+.|-+ ++||... ...++..+... +..++|+|....+
T Consensus 378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpav 456 (555)
T KOG1587|consen 378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAV 456 (555)
T ss_pred cCCcccccccccccccccccCcceEeeecCCCccceeeeeccce-eEeccccCCCCcchhhhhccceeeeeEEcCcCceE
Confidence 322 1 123356678999999999997765555555888 9999987 66777666644 6678999999999
Q ss_pred EEEeecCCeEEEEeCCCCC-CCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCC
Q psy3710 241 AFPGRKSGHVHLVDLADPE-RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 241 ~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~ 301 (424)
++++..+|.|.+||+.... .+.....-+....+.+.|+++|+.|++|...|+ +.+|++..
T Consensus 457 F~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~-~~~~~l~~ 517 (555)
T KOG1587|consen 457 FATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGT-THILKLSE 517 (555)
T ss_pred EEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCc-EEEEEcCc
Confidence 9999999999999998654 344444455667778888899999999999999 99999863
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-18 Score=145.36 Aligned_cols=196 Identities=19% Similarity=0.323 Sum_probs=153.3
Q ss_pred CeeEEEeecCCCCeEEEeeccCCeEEEEeCCCC-------CCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEE
Q psy3710 142 KGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADP-------ERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 214 (424)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd 214 (424)
..+.++.+.+....+++ ++.||.+.+|+++.. .+++.++.+|.++|.|+++.+++..+++|+.||+ |+.|+
T Consensus 295 d~ir~l~~~~sep~lit-~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~-I~~w~ 372 (577)
T KOG0642|consen 295 DCIRALAFHPSEPVLIT-ASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT-IRCWN 372 (577)
T ss_pred hhhhhhhcCCCCCeEEE-eccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce-eeeec
Confidence 33567778888888888 999999999999432 2467789999999999999999999999999999 99999
Q ss_pred CCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q psy3710 215 TGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLI 294 (424)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i 294 (424)
+....- |+ |..........+.+|.+.++.+++|+....|++++.||+ +
T Consensus 373 ~p~n~d--------------p~-----------------ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgT-v 420 (577)
T KOG0642|consen 373 LPPNQD--------------PD-----------------DSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGT-V 420 (577)
T ss_pred cCCCCC--------------cc-----------------cccCcchhccceeccccceeeeeecccccceeeecCCce-E
Confidence 862211 00 111111123345599999999999999899999999999 9
Q ss_pred EEEECCCCceeeee----------------------------------------------------------------cc
Q psy3710 295 RVFDTGSGQKLNEL----------------------------------------------------------------RR 310 (424)
Q Consensus 295 ~iwd~~~~~~~~~~----------------------------------------------------------------~~ 310 (424)
++|+...... .+| .|
T Consensus 421 r~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~ 499 (577)
T KOG0642|consen 421 RLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP 499 (577)
T ss_pred EeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC
Confidence 9999876554 111 13
Q ss_pred CCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEE
Q psy3710 311 DSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYK 390 (424)
Q Consensus 311 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~ 390 (424)
.+.+.+++..|+.|+++|..+++.+.. ...|...++++++.|+|-+|++++.||.+++
T Consensus 500 ~~~~~~~~hed~~Ir~~dn~~~~~l~s----------------------~~a~~~svtslai~~ng~~l~s~s~d~sv~l 557 (577)
T KOG0642|consen 500 TADITFTAHEDRSIRFFDNKTGKILHS----------------------MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRL 557 (577)
T ss_pred CCCeeEecccCCceecccccccccchh----------------------eeeccceecceeecCCCceEEeecCCceeeh
Confidence 556777888888888888888776543 4455667889999999999999999999999
Q ss_pred EEec
Q psy3710 391 FMFN 394 (424)
Q Consensus 391 ~~~~ 394 (424)
|.+.
T Consensus 558 ~kld 561 (577)
T KOG0642|consen 558 WKLD 561 (577)
T ss_pred hhcc
Confidence 9986
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=137.97 Aligned_cols=194 Identities=16% Similarity=0.214 Sum_probs=150.4
Q ss_pred EEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcE
Q psy3710 14 LYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQV 92 (424)
Q Consensus 14 ~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~ 92 (424)
.+++|+++|..|++|+.|| +|||+............|.+.|.++.|+||++.|++++ .| ..+||+.++|..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig-------~d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIG-------AD-SARVWSVNTGAA 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEec-------CC-ceEEEEeccCch
Confidence 6899999999999999999 99999877777666666789999999999999999999 46 999999999977
Q ss_pred EEEEe---ecCCeEEEEecCCc----eEEEe----eccEEEEeecCCC--ceeEEEeeCCCCCeeEEEeecCCCCeEEEe
Q psy3710 93 VICLE---FNAPVKGVRLRRDK----IVVVL----EGLIKVYTFIQCP--QQLHVFETNPNPKGLCVLCPNSNNSLLAFP 159 (424)
Q Consensus 93 ~~~~~---~~~~v~~~~~~~~~----~~~~~----~~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (424)
+.... .+.....+.|+.|. .+++. .+.|..|++..-. ..++..+.-.....+.+++.+++|++++.
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al- 298 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL- 298 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE-
Confidence 76655 23446677887665 33333 4566666663111 11122122122245889999999999999
Q ss_pred eccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCC
Q psy3710 160 GRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS 217 (424)
Q Consensus 160 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~ 217 (424)
|+.||.|.+++..+.+.....-+.|...|+.+.|+|+.+++++.+.+.. ..+..+.-
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~-~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE-AAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc-eeEEEEee
Confidence 9999999999998874444466789999999999999999999999888 88877643
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.9e-16 Score=142.94 Aligned_cols=281 Identities=16% Similarity=0.216 Sum_probs=190.9
Q ss_pred cCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCccccccc---ccCCCeeeEEEeccC--ceEEEEeCCcCCCcCCCeE
Q psy3710 9 YKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQD---FTDGGLGHVEMLFRC--NYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 9 h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~---~~~~~i~~~~~~~~~--~~l~~~~~~~~~~~~d~~i 82 (424)
...+-..+.|+|-...++++.++. |++||.+.++....+. +....|+.+.+.... ..+++++ .||.|
T Consensus 1063 n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas-------~dGvI 1135 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTAS-------SDGVI 1135 (1387)
T ss_pred CCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeec-------cCceE
Confidence 334566788999998999888666 9999998887754433 345678888887644 3455555 58999
Q ss_pred EEEECC-C----CcEEEEEe-ec-------CCeEEEEecCC-ceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEE
Q psy3710 83 MIWDDL-K----KQVVICLE-FN-------APVKGVRLRRD-KIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCV 146 (424)
Q Consensus 83 ~iwd~~-~----~~~~~~~~-~~-------~~v~~~~~~~~-~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 146 (424)
+||+-- + .+.+.... .. +.-.-+.|... |.++++ -..|+|||.. .......+.... ...+++
T Consensus 1136 RIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~-~E~~~~diP~~s-~t~vTa 1213 (1387)
T KOG1517|consen 1136 RIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAH-KEQVVADIPYGS-STLVTA 1213 (1387)
T ss_pred EEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecc-cceeEeecccCC-Ccccee
Confidence 999732 2 23332222 11 11122445443 444444 3589999986 445555444332 233555
Q ss_pred EeecCC-CCeEEEeeccCCeEEEEeCCCCCC--CCcccccccCC--eEEEEEccCCC-EEEEEecCCcEEEEEECCCcce
Q psy3710 147 LCPNSN-NSLLAFPGRKSGHVHLVDLADPER--PPLDIAAHEAP--LSCIALNQTGT-RLATASYKGTLIRVFDTGSGQK 220 (424)
Q Consensus 147 ~~~~~~-~~~l~~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~d~~~i~iwd~~~~~~ 220 (424)
+..+.. |..+++ |..||.|++||.+.... .+...+.|++. |..+.+.+.|- .|++|+.+|. |++||++....
T Consensus 1214 LS~~~~~gn~i~A-GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~ 1291 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAA-GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSK 1291 (1387)
T ss_pred ecccccCCceEEE-eecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCcc
Confidence 555433 567776 99999999999987533 56677889888 99999998764 5999999999 99999998422
Q ss_pred eeE------Eecc--eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCe-----eeccCCCCeEEEEEcCCCCEEEEE
Q psy3710 221 LNE------LRRG--LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL-----DIAAHEAPLSCIALNQTGTRLATA 287 (424)
Q Consensus 221 ~~~------~~~~--~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~ 287 (424)
... .+.+ .+++..++....++. |+. +.|.||++........ .+....+.+.|++|+|..-.+|+|
T Consensus 1292 e~~~~iv~~~~yGs~lTal~VH~hapiiAs-Gs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1292 ETFLTIVAHWEYGSALTALTVHEHAPIIAS-GSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred cccceeeeccccCccceeeeeccCCCeeee-cCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhc
Confidence 211 1112 677777877776654 666 9999999986542111 122335678999999998899999
Q ss_pred eCCCcEEEEEECCCCc
Q psy3710 288 SYKGTLIRVFDTGSGQ 303 (424)
Q Consensus 288 ~~d~~~i~iwd~~~~~ 303 (424)
+.|.. |.||......
T Consensus 1370 ~~Ds~-V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1370 SADST-VSIYSCEKPR 1384 (1387)
T ss_pred cCCce-EEEeecCCcC
Confidence 99999 9999876553
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-17 Score=137.58 Aligned_cols=289 Identities=12% Similarity=0.146 Sum_probs=194.0
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCeEEE-EeCCcCcccccccccCCCeeeEEEe--------ccCceEEEEeCCcCCC
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDGFRI-YNCDPLKEKERQDFTDGGLGHVEML--------FRCNYLALVGGGTHPK 76 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~i~i-w~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~l~~~~~~~~~~ 76 (424)
-.-|...|.|+.|+.+...+.+++++.+.+ |++.+... .....++.-+....+. ...+.++.++
T Consensus 10 k~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s------ 82 (737)
T KOG1524|consen 10 KNRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICS------ 82 (737)
T ss_pred ccccceeEEeecccccceEEEeccCceEEEeecccchhh-hhhhCCcccCCccccccccccCCCCCcceEEEEc------
Confidence 345788889999999988888888888444 45433222 1111111111111110 1224566666
Q ss_pred cCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCC
Q psy3710 77 YPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSN 152 (424)
Q Consensus 77 ~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (424)
+||.+.+.+ +.++..+.+. |.+.+.+-.|+|||.-+.+ ||.|++|.- ++-+..++.... ..+.|++|.|+
T Consensus 83 -~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr--sGMLRStl~Q~~--~~v~c~~W~p~ 156 (737)
T KOG1524|consen 83 -NDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR--SGMLRSTVVQNE--ESIRCARWAPN 156 (737)
T ss_pred -CCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec--cchHHHHHhhcC--ceeEEEEECCC
Confidence 589999987 4677777777 8999999999999976665 999999995 343333333323 45889999999
Q ss_pred CCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe---ccee
Q psy3710 153 NSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR---RGLC 229 (424)
Q Consensus 153 ~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~---~~~~ 229 (424)
.+.++. +..+.+.|=.+... ..+...++|.+-|.++.|++..+.+++|++|-. .++||-. |..+..-. .+++
T Consensus 157 S~~vl~--c~g~h~~IKpL~~n-~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD~~-G~~Lf~S~~~ey~IT 231 (737)
T KOG1524|consen 157 SNSIVF--CQGGHISIKPLAAN-SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWDAQ-GANLFTSAAEEYAIT 231 (737)
T ss_pred CCceEE--ecCCeEEEeecccc-cceeEEeccCcEEEEeecCccccceeecCCcee-EEeeccc-CcccccCChhcccee
Confidence 988887 44567777677654 567788999999999999999999999999999 9999974 44444332 3478
Q ss_pred eeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec
Q psy3710 230 VLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR 309 (424)
Q Consensus 230 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 309 (424)
.++|.|+ ..+++ ++. ++++ .-+...+.|..++||+||..++.|...|..+.-+-++.. ..
T Consensus 232 Sva~npd-~~~~v-~S~-nt~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~-l~---- 291 (737)
T KOG1524|consen 232 SVAFNPE-KDYLL-WSY-NTAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQ-LV---- 291 (737)
T ss_pred eeeeccc-cceee-eee-eeee------------ecCCCccceEEEEEcCCCceeeccccCceEEEeeeehhh-hh----
Confidence 8999999 44443 332 2222 112456789999999999999999999973332322211 10
Q ss_pred cCCcEEEEEeCCCcEEEEEccccc
Q psy3710 310 RDSSYLCVSSDHGTVHVFSVDEAQ 333 (424)
Q Consensus 310 ~~~~~l~~~~~d~~i~iw~~~~~~ 333 (424)
-+.+=++......|.+-|+.++.
T Consensus 292 -~~n~~~t~~~r~~I~vrdV~~~v 314 (737)
T KOG1524|consen 292 -SGNLKATSKSRKSITVRDVATGV 314 (737)
T ss_pred -hccceeEeeccceEEeehhhhhH
Confidence 12233444455667777777653
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-15 Score=143.00 Aligned_cols=267 Identities=13% Similarity=0.119 Sum_probs=176.8
Q ss_pred cccccccCCceEEEEECCCC-CeeEeecCCe-EEEEeCCcCcc-------cccccccCCCeeeEEEeccCceEEEEeCCc
Q psy3710 3 LGTSSTYKNGLLYAGFNQDQ-GCFACGMEDG-FRIYNCDPLKE-------KERQDFTDGGLGHVEMLFRCNYLALVGGGT 73 (424)
Q Consensus 3 ~~~l~~h~~~V~~~~~s~~g-~~la~g~~~~-i~iw~~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 73 (424)
+..|..|+..|..++.++.. .+|++|++|| |++|++..... ...+......+..+.+.+.++.+|+++
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t--- 1117 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST--- 1117 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc---
Confidence 34588999999999997765 9999999999 99999754322 112233467889999999999999987
Q ss_pred CCCcCCCeEEEEECCCC--cE-----EEEEe--ecCCeEEE-EecCC--c-eEE-Ee-eccEEEEeecCCCceeEEEeeC
Q psy3710 74 HPKYPNNRVMIWDDLKK--QV-----VICLE--FNAPVKGV-RLRRD--K-IVV-VL-EGLIKVYTFIQCPQQLHVFETN 138 (424)
Q Consensus 74 ~~~~~d~~i~iwd~~~~--~~-----~~~~~--~~~~v~~~-~~~~~--~-~~~-~~-~~~i~v~~~~~~~~~~~~~~~~ 138 (424)
.||.|.+.+++.- +. .+... ..+.+..+ ++... . .++ ++ -+.|..||++ .......++..
T Consensus 1118 ----~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r-~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1118 ----KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR-MRHDAWRLKNQ 1192 (1431)
T ss_pred ----CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch-hhhhHHhhhcC
Confidence 6999999988652 11 11111 23334333 23221 1 222 23 6889999997 55666666666
Q ss_pred CCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCccc-ccccCCeEEEEEccCC---CEEEEEec--CCcEEEE
Q psy3710 139 PNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDI-AAHEAPLSCIALNQTG---TRLATASY--KGTLIRV 212 (424)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~---~~l~~~~~--d~~~i~i 212 (424)
.....+.+++.+|.+.+++. |...|.+.+||++-+ .++... ..+..+|..+..+|-. ...++++. .+. |.+
T Consensus 1193 ~~hG~vTSi~idp~~~Wlvi-Gts~G~l~lWDLRF~-~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne-vs~ 1269 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVI-GTSRGQLVLWDLRFR-VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE-VST 1269 (1431)
T ss_pred ccccceeEEEecCCceEEEE-ecCCceEEEEEeecC-ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc-eee
Confidence 55567899999999999998 999999999999975 444433 3556888888887732 45555544 566 999
Q ss_pred EECCCcceeeEEecc--eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCC
Q psy3710 213 FDTGSGQKLNELRRG--LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK 290 (424)
Q Consensus 213 wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 290 (424)
|++.+|.+...+... ...+. |-+.... .-+.+.-......+..-+..+.+|+.|
T Consensus 1270 wn~~~g~~~~vl~~s~~~p~ls--------------------~~~Ps~~----~~kp~~~~~~~~~~~~~~~~~ltggsd 1325 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILS--------------------YALPSND----ARKPDSLAGISCGVCEKNGFLLTGGSD 1325 (1431)
T ss_pred eecccCcceEEEEcCCCCcchh--------------------hhccccc----CCCCCcccceeeecccCCceeeecCCc
Confidence 999999776665422 00000 0000000 000222223333444455689999999
Q ss_pred CcEEEEEECCCCcee
Q psy3710 291 GTLIRVFDTGSGQKL 305 (424)
Q Consensus 291 ~~~i~iwd~~~~~~~ 305 (424)
.. ||.||....+..
T Consensus 1326 ~k-IR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1326 MK-IRKWDPTRPEIS 1339 (1431)
T ss_pred cc-eeeccCCCcccc
Confidence 99 999999866544
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-16 Score=128.63 Aligned_cols=206 Identities=14% Similarity=0.068 Sum_probs=156.6
Q ss_pred ccccccCCceEEEEECCCC-CeeEeecCCe-EEEEeCCcCcc-------cccccccCCCeeeEEEeccCc-eEEEEeCCc
Q psy3710 4 GTSSTYKNGLLYAGFNQDQ-GCFACGMEDG-FRIYNCDPLKE-------KERQDFTDGGLGHVEMLFRCN-YLALVGGGT 73 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~g-~~la~g~~~~-i~iw~~~~~~~-------~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~ 73 (424)
....||+.+|..++|+|-. ..+|+|++|. |.||.+..... +..+.+|...|..++|.|... .|++++
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag--- 151 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG--- 151 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc---
Confidence 3467999999999999965 6788999999 99999754433 333556899999999999874 555555
Q ss_pred CCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeec
Q psy3710 74 HPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPN 150 (424)
Q Consensus 74 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (424)
.|++|.+||+.+|+.+.++.|+.-|+++.|+.||.++++ |..|+|||.+ .++.+..-..|.+.....+ .|-
T Consensus 152 ----~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr-~~~~v~e~~~heG~k~~Ra-ifl 225 (472)
T KOG0303|consen 152 ----SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR-RGTVVSEGVAHEGAKPARA-IFL 225 (472)
T ss_pred ----CCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCC-CCcEeeecccccCCCccee-EEe
Confidence 489999999999999999999999999999999988886 9999999997 7788777767765544433 344
Q ss_pred CCCCeEEEeec---cCCeEEEEeCCCCCCCCcccc-cccCCeEEEEEccCCCEEEEEe-cCCcEEEEEECCCcce
Q psy3710 151 SNNSLLAFPGR---KSGHVHLVDLADPERPPLDIA-AHEAPLSCIALNQTGTRLATAS-YKGTLIRVFDTGSGQK 220 (424)
Q Consensus 151 ~~~~~l~~~~~---~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~d~~~i~iwd~~~~~~ 220 (424)
.++. ++++|. .+..+.+||..+-..++.... ...+.|.---|.++.+.++.++ .|+. |+.|.+....+
T Consensus 226 ~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~-IRYyEit~d~P 298 (472)
T KOG0303|consen 226 ASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSS-IRYFEITNEPP 298 (472)
T ss_pred ccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcc-eEEEEecCCCc
Confidence 5676 555464 478899999887644433211 2234455566788888776655 6788 99999977653
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.4e-15 Score=128.61 Aligned_cols=283 Identities=12% Similarity=0.091 Sum_probs=178.3
Q ss_pred EEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcE
Q psy3710 14 LYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQV 92 (424)
Q Consensus 14 ~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~ 92 (424)
..++|+|||+++.+.+.++ |.++|+.+.+.+..... ......+++++++++++++.. .++.+.++|.++.+.
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~------~~~~v~v~D~~tle~ 112 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDGKYVYVANY------EPGTVSVIDAETLEP 112 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TTTEEEEEEE------ETTEEEEEETTT--E
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCCCEEEEEec------CCCceeEeccccccc
Confidence 3478999999999888777 99999999988665554 344567999999999987774 379999999999999
Q ss_pred EEEEee--------cCCeEEEEecCCce-EEEe---eccEEEEeecCCCcee-EEEeeCCCCCeeEEEeecCCCCeEEEe
Q psy3710 93 VICLEF--------NAPVKGVRLRRDKI-VVVL---EGLIKVYTFIQCPQQL-HVFETNPNPKGLCVLCPNSNNSLLAFP 159 (424)
Q Consensus 93 ~~~~~~--------~~~v~~~~~~~~~~-~~~~---~~~i~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (424)
++.+.. ...+.++..+|... +++. .+.|.+.|........ ..+... .......++|++++++++
T Consensus 113 v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g---~~~~D~~~dpdgry~~va 189 (369)
T PF02239_consen 113 VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVG---RFPHDGGFDPDGRYFLVA 189 (369)
T ss_dssp EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-----TTEEEEEE-TTSSEEEEE
T ss_pred eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccc---ccccccccCcccceeeec
Confidence 998862 13567787777765 4444 4778888875332222 223322 224567899999998775
Q ss_pred eccCCeEEEEeCCCCCCCCccc----ccccCCeEEEE-------Ec--cCCCEEEEEecCCcEEEEEECCCcceeeEEec
Q psy3710 160 GRKSGHVHLVDLADPERPPLDI----AAHEAPLSCIA-------LN--QTGTRLATASYKGTLIRVFDTGSGQKLNELRR 226 (424)
Q Consensus 160 ~~~dg~i~i~d~~~~~~~~~~~----~~~~~~v~~~~-------~~--~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~ 226 (424)
...+..|.++|..+. +.+..+ ..|..++..+- |. ..+...++.-.... +.+||..+.+.+++++.
T Consensus 190 ~~~sn~i~viD~~~~-k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~-v~v~d~~~wkvv~~I~~ 267 (369)
T PF02239_consen 190 ANGSNKIAVIDTKTG-KLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDP-VSVHDDYAWKVVKTIPT 267 (369)
T ss_dssp EGGGTEEEEEETTTT-EEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--T-TT-STTTBTSEEEEEE-
T ss_pred ccccceeEEEeeccc-eEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCc-cccchhhcCeEEEEEEC
Confidence 677889999998875 333222 13444444331 21 12233323323334 67899999999998874
Q ss_pred c--eeeeeecCCCCeEEEE---eecCCeEEEEeCCCCCCCCeeec-cCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEEEC
Q psy3710 227 G--LCVLCPNSNNSLLAFP---GRKSGHVHLVDLADPERPPLDIA-AHEAPLSCIALNQTGTRLATASYKGT-LIRVFDT 299 (424)
Q Consensus 227 ~--~~~~~~~~~~~~~~~~---~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~-~i~iwd~ 299 (424)
. .-.+..+|++.++.+. +...+.|.++|.++.+. ...+. .....+..+.|+++|+++..+..++. .|.+||.
T Consensus 268 ~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~-~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 268 QGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV-VKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE-EE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred CCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcce-eEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 3 3556779999999986 56678999999998742 22222 22345999999999998777665443 3999999
Q ss_pred CCCceeeeec
Q psy3710 300 GSGQKLNELR 309 (424)
Q Consensus 300 ~~~~~~~~~~ 309 (424)
.+.+.+.++.
T Consensus 347 ~Tl~~~~~i~ 356 (369)
T PF02239_consen 347 KTLKEKKRIP 356 (369)
T ss_dssp TTTEEEEEEE
T ss_pred CCcEEEEEEE
Confidence 9999988764
|
... |
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.3e-17 Score=137.92 Aligned_cols=246 Identities=12% Similarity=0.163 Sum_probs=175.8
Q ss_pred ccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC--------CcEEEEEe-ecCCeEEEEecCCceEEEe---
Q psy3710 49 FTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK--------KQVVICLE-FNAPVKGVRLRRDKIVVVL--- 116 (424)
Q Consensus 49 ~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~--------~~~~~~~~-~~~~v~~~~~~~~~~~~~~--- 116 (424)
.|...+..+.+-+....+++++ .|+++++|+++. -+.+.++. |.++|.|+++.+++..+.+
T Consensus 292 s~~d~ir~l~~~~sep~lit~s-------ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITAS-------EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEec-------cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence 3677888888999999999999 689999999932 24566777 8999999999999987776
Q ss_pred eccEEEEeecCCC---------ceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCccccc--cc
Q psy3710 117 EGLIKVYTFIQCP---------QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAA--HE 185 (424)
Q Consensus 117 ~~~i~v~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~ 185 (424)
||+|+.|++-.+. .....+.+|... +..+++++....|++ ++.||++++|+.... .+ ..+.. ..
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda--vw~l~~s~~~~~Lls-cs~DgTvr~w~~~~~-~~-~~f~~~~e~ 439 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDA--VWLLALSSTKDRLLS-CSSDGTVRLWEPTEE-SP-CTFGEPKEH 439 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccc--eeeeeecccccceee-ecCCceEEeeccCCc-Cc-cccCCcccc
Confidence 9999999763221 234456677754 667778887778887 999999999998765 33 22222 22
Q ss_pred CCeEEEEEccCC-CEEEEEecCCcEEEEEECCCcceeeEEecc----------eeeeeecCCCCeEEEEeecCCeEEEEe
Q psy3710 186 APLSCIALNQTG-TRLATASYKGTLIRVFDTGSGQKLNELRRG----------LCVLCPNSNNSLLAFPGRKSGHVHLVD 254 (424)
Q Consensus 186 ~~v~~~~~~~~~-~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~dg~i~i~d 254 (424)
+.-.++.+-... ...++...-+. -.+.+++....+..+... +..+..+|.. .+.+++..|+.|+++|
T Consensus 440 g~Plsvd~~ss~~a~~~~s~~~~~-~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~d 517 (577)
T KOG0642|consen 440 GYPLSVDRTSSRPAHSLASFRFGY-TSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRSIRFFD 517 (577)
T ss_pred CCcceEeeccchhHhhhhhccccc-ccchhhhhhhheeeccccCCCcccccCccceEEecCCC-CeeEecccCCceeccc
Confidence 333455554322 22222222232 334445544444444321 3445556666 5666699999999999
Q ss_pred CCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeecc
Q psy3710 255 LADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR 310 (424)
Q Consensus 255 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~ 310 (424)
..++. +......|...++++++.|+|-+|++++.|+. +++|.+....++....+
T Consensus 518 n~~~~-~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 518 NKTGK-ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLDVKTCVLESTA 571 (577)
T ss_pred ccccc-cchheeeccceecceeecCCCceEEeecCCce-eehhhccchheeecccc
Confidence 99977 45566689999999999999999999999999 99999988777766544
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-14 Score=125.29 Aligned_cols=324 Identities=12% Similarity=0.163 Sum_probs=210.3
Q ss_pred EEEEECCCCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCC----CcCCCeEEEEECCC
Q psy3710 14 LYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHP----KYPNNRVMIWDDLK 89 (424)
Q Consensus 14 ~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~----~~~d~~i~iwd~~~ 89 (424)
+.+.|||-|.||++-...||.+|--.......+.. ...+..+.|+|..+||++.+..... ......++|||+.+
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~--Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFY--HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eeEEecCCceEEEEEeccceeeecCccHHHHHhcc--CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 56899999999999999999999877766654333 3457889999999999998854211 01236899999999
Q ss_pred CcEEEEEee---cCCe-EEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeecc-
Q psy3710 90 KQVVICLEF---NAPV-KGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRK- 162 (424)
Q Consensus 90 ~~~~~~~~~---~~~v-~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 162 (424)
|...+.+.. +..+ .-..||.|.+++|. ...|.||+.. ...++..- .-...++..+.|+|.+..||.-.-.
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtp-sf~lld~K--slki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETP-SFMLLDKK--SLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecC-ceeeeccc--ccCCccccCcccCCCcceEEEEcccc
Confidence 999998873 2222 24789999999996 7889999964 32222211 1223557789999999988861111
Q ss_pred ---CCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEec----------CCcEEEEEECCCcc-ee--eEEec
Q psy3710 163 ---SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY----------KGTLIRVFDTGSGQ-KL--NELRR 226 (424)
Q Consensus 163 ---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~~i~iwd~~~~~-~~--~~~~~ 226 (424)
-..+.+..+.+. +.++.-.-|+-.-..+.|..+|.+|+.--. -.. +.|+.++... ++ ..++.
T Consensus 369 ~~~parvtL~evPs~-~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n-~eIfrireKdIpve~velke 446 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSK-REIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN-LEIFRIREKDIPVEVVELKE 446 (698)
T ss_pred cCCcceEEEEecCcc-ceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEee-EEEEEeeccCCCceeeecch
Confidence 234566666664 444444444444456778888888875321 112 4555554432 12 23344
Q ss_pred ceeeeeecCCCCeEEEEeec--CCeEEEEeCCC-CCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCc
Q psy3710 227 GLCVLCPNSNNSLLAFPGRK--SGHVHLVDLAD-PERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ 303 (424)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~--dg~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~ 303 (424)
.+..++|.|.|..+++..+. ..++.+|-+++ ...+.....-.....+.+.|+|.|++++.+..-+
T Consensus 447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s------------ 514 (698)
T KOG2314|consen 447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVS------------ 514 (698)
T ss_pred heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecc------------
Confidence 57778899999988775543 45788898874 3322222222335567889999999888765332
Q ss_pred eeeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEe
Q psy3710 304 KLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVIC 383 (424)
Q Consensus 304 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 383 (424)
..|.+.++|+.-....... .|.+ ...+.+-|.|.|+|+++++
T Consensus 515 ----------------~~g~l~F~D~~~a~~k~~~--------~~eh--------------~~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 515 ----------------RRGDLEFYDTDYADLKDTA--------SPEH--------------FAATEVEWDPTGRYVVTSS 556 (698)
T ss_pred ----------------cccceEEEecchhhhhhcc--------Cccc--------------cccccceECCCCCEEEEee
Confidence 3556677776642221110 0100 1134568999999999988
Q ss_pred c------cCcEEEEEec
Q psy3710 384 A------DGSYYKFMFN 394 (424)
Q Consensus 384 ~------dg~v~~~~~~ 394 (424)
+ |.-.++|++.
T Consensus 557 s~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 557 SSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred ehhhhccccceEEEEee
Confidence 7 5567888885
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=132.36 Aligned_cols=182 Identities=23% Similarity=0.258 Sum_probs=141.8
Q ss_pred EEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEE
Q psy3710 145 CVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNEL 224 (424)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~ 224 (424)
..++++.+|..+++ |+.||.+|+|+.... ..+.....|.+.|.++.|+|||+.|++.+.| . .+||+.+++..+...
T Consensus 148 k~vaf~~~gs~lat-gg~dg~lRv~~~Ps~-~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~-~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLAT-GGTDGTLRVWEWPSM-LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-S-ARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeee-ccccceEEEEecCcc-hhhhhhHhhcCccccceeCCCCcEEEEecCC-c-eEEEEeccCchhhhc
Confidence 56889999999998 999999999997765 6777788899999999999999999999999 5 899999999666555
Q ss_pred ecc-----eeeeeecCCC---CeE-EEEeecCCeEEEEeCCCCCC----CCeeeccCCCCeEEEEEcCCCCEEEEEeCCC
Q psy3710 225 RRG-----LCVLCPNSNN---SLL-AFPGRKSGHVHLVDLADPER----PPLDIAAHEAPLSCIALNQTGTRLATASYKG 291 (424)
Q Consensus 225 ~~~-----~~~~~~~~~~---~~~-~~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 291 (424)
... ...+.|..++ ... ++.....+.|+.||+..... ...........|++++.++||+++|.|+.||
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 421 2333343333 222 33334456677777655432 2222223455799999999999999999999
Q ss_pred cEEEEEECCCCceee-------------eeccCCcEEEEEeCCCcEEEEEccc
Q psy3710 292 TLIRVFDTGSGQKLN-------------ELRRDSSYLCVSSDHGTVHVFSVDE 331 (424)
Q Consensus 292 ~~i~iwd~~~~~~~~-------------~~~~~~~~l~~~~~d~~i~iw~~~~ 331 (424)
. |.|++..+-+.++ +|.|+.+++++.+.|....+..+.-
T Consensus 304 s-Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 304 S-VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred c-EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9 9999999877765 5789999999999999999988876
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-15 Score=136.32 Aligned_cols=238 Identities=12% Similarity=0.066 Sum_probs=154.4
Q ss_pred EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCce
Q psy3710 33 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKI 112 (424)
Q Consensus 33 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (424)
|.++|.+..... ....+...+...+|+|+++.+++++... ....|.+||+.+++........+...+.+|+||+.
T Consensus 178 L~~~D~dG~~~~-~l~~~~~~v~~p~wSPDG~~la~~s~~~----~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 178 LQISDADGQNAQ-SALSSPEPIISPAWSPDGTKLAYVSFES----KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred EEEECCCCCCce-EeccCCCCcccceEcCCCCEEEEEEccC----CCcEEEEEECCCCCEEEeecCCCCccceEECCCCC
Confidence 777776433322 2333466788899999999999887432 23579999999887655433566677899999996
Q ss_pred EEEe----eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCe
Q psy3710 113 VVVL----EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPL 188 (424)
Q Consensus 113 ~~~~----~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 188 (424)
.++. ++...+|.+.........+..+. .......|+|||+.|++++..+|...+|.+.........+..+....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~--~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~ 330 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSS--GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYN 330 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCC--CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCc
Confidence 6553 66666766543333344443332 22345679999999987455566777776542212222222222334
Q ss_pred EEEEEccCCCEEEEEecCC---cEEEEEECCCcceeeEEec-ceeeeeecCCCCeEEEEeecCCe--EEEEeCCCCCCCC
Q psy3710 189 SCIALNQTGTRLATASYKG---TLIRVFDTGSGQKLNELRR-GLCVLCPNSNNSLLAFPGRKSGH--VHLVDLADPERPP 262 (424)
Q Consensus 189 ~~~~~~~~~~~l~~~~~d~---~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dg~--i~i~d~~~~~~~~ 262 (424)
...+|+|+|++|+..+.++ . |.+||+.+++....... ......|+|++..++++....|. +++.++.. ...
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g~~~-I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g--~~~ 407 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGGAFK-LYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG--RIK 407 (427)
T ss_pred CceEECCCCCEEEEEEccCCcEE-EEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECCC--Cce
Confidence 5678999999998776553 5 99999988765432222 23567899999999997766654 55556632 234
Q ss_pred eeeccCCCCeEEEEEcCC
Q psy3710 263 LDIAAHEAPLSCIALNQT 280 (424)
Q Consensus 263 ~~~~~~~~~v~~~~~~~~ 280 (424)
..+..+.+.+...+|+|-
T Consensus 408 ~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 408 QRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEeecCCCCCCCCccCCC
Confidence 444456677788888873
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-14 Score=122.62 Aligned_cols=325 Identities=13% Similarity=0.149 Sum_probs=215.0
Q ss_pred cCCceEEEEECCCCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcC--------CCcCCC
Q psy3710 9 YKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTH--------PKYPNN 80 (424)
Q Consensus 9 h~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~--------~~~~d~ 80 (424)
-.-++..+.|||.|.+|++....+|.+|.......+ ..+....|..+.|+|.+++|.+-+.... +...++
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l--~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKL--VRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhhe--eeeecCCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 455788999999999999999999999998777643 2333566888999999999998764321 223456
Q ss_pred eEEEEECCCCcEEEEEee-cCC--eE-EEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCC
Q psy3710 81 RVMIWDDLKKQVVICLEF-NAP--VK-GVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNS 154 (424)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~-~~~--v~-~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (424)
.+.+||..+|..+..+.. ..+ .+ -+.|+-+..+++- ...++|+++..+.. ...+.. -.+.++..+.++|.++
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~-~~p~~~-lr~~gi~dFsisP~~n 186 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIE-EHPFKN-LRPVGILDFSISPEGN 186 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccc-cCchhh-ccccceeeEEecCCCC
Confidence 899999999999998884 333 34 6788888877774 78999999732222 111111 1135677788887642
Q ss_pred --eEEE----eeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecce
Q psy3710 155 --LLAF----PGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGL 228 (424)
Q Consensus 155 --~l~~----~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~ 228 (424)
.|++ .....+.+++|.+..+ ..+.+-.-.+..-..+.|.+.|++|+.-- .-+..+++.
T Consensus 187 ~~~la~~tPEk~~kpa~~~i~sIp~~-s~l~tk~lfk~~~~qLkW~~~g~~ll~l~-------~t~~ksnKs-------- 250 (561)
T COG5354 187 HDELAYWTPEKLNKPAMVRILSIPKN-SVLVTKNLFKVSGVQLKWQVLGKYLLVLV-------MTHTKSNKS-------- 250 (561)
T ss_pred CceEEEEccccCCCCcEEEEEEccCC-CeeeeeeeEeecccEEEEecCCceEEEEE-------EEeeecccc--------
Confidence 2333 1456778888888754 33332222233335677888777765422 111122211
Q ss_pred eeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEECCCC----
Q psy3710 229 CVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS--YKGTLIRVFDTGSG---- 302 (424)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~~i~iwd~~~~---- 302 (424)
-.....+++++++....++.. ...++|...+|.|.++.+++.+ .+.. +.++|++..
T Consensus 251 ---------------yfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~-~s~~~lr~Nl~~~ 312 (561)
T COG5354 251 ---------------YFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPAS-VSVFDLRGNLRFY 312 (561)
T ss_pred ---------------eeccceEEEEeecccccceec--cccccceeeeecccCCceeEEecccccc-eeecccccceEEe
Confidence 112456778887744433222 5688999999999988877766 4555 777777654
Q ss_pred -----ceeeeeccCCcEEEEEeCC---CcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEec
Q psy3710 303 -----QKLNELRRDSSYLCVSSDH---GTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGA 374 (424)
Q Consensus 303 -----~~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 374 (424)
+....|+|.+++++.++-| |.+-+||..+.-.... .......+.|.|+|
T Consensus 313 ~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~-----------------------~~~~~n~s~~~wsp 369 (561)
T COG5354 313 FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAG-----------------------AFNGLNTSYCDWSP 369 (561)
T ss_pred cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEE-----------------------EeecCCceEeeccC
Confidence 3333578999999998765 6899999877332210 11122345678999
Q ss_pred CCCeEEEEec------cCcEEEEEec
Q psy3710 375 DSNSIIVICA------DGSYYKFMFN 394 (424)
Q Consensus 375 ~~~~l~~~~~------dg~v~~~~~~ 394 (424)
|++++.+... |..+.+|++.
T Consensus 370 d~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 370 DGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred CceEEEecCCCcccccCcceEEEEec
Confidence 9999887643 7899999996
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-14 Score=118.92 Aligned_cols=230 Identities=17% Similarity=0.142 Sum_probs=155.4
Q ss_pred CCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe--ecCCeEEEEecCCc---eEEEeeccEEEEee
Q psy3710 51 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE--FNAPVKGVRLRRDK---IVVVLEGLIKVYTF 125 (424)
Q Consensus 51 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~---~~~~~~~~i~v~~~ 125 (424)
.-.+..++|.+.-..++++. .|-.|++||-.. ++...++ .+..|.+++|.|.+ ..++..+.|.+|..
T Consensus 98 ~~dlr~~aWhqH~~~fava~-------nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~ 169 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVAT-------NDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSD 169 (445)
T ss_pred hcceeeEeechhhhhhhhhc-------cCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEc
Confidence 34566788887655566665 589999999766 5556666 47789999999876 44445889999987
Q ss_pred cCCCcee-----------EEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEc
Q psy3710 126 IQCPQQL-----------HVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALN 194 (424)
Q Consensus 126 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 194 (424)
+.+...- +.++ +.+...+.++.|++||..+++++..+..|.|||..++...... ...-+.+.-+.|+
T Consensus 170 s~tln~~r~~~~~s~~~~qvl~-~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkwS 247 (445)
T KOG2139|consen 170 SRTLNANRNIRMMSTHHLQVLQ-DPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWS 247 (445)
T ss_pred Ccccccccccccccccchhhee-CCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-ccCCCceeeEEEc
Confidence 5332111 1222 2333568899999999999997778899999999987332222 2345678999999
Q ss_pred cCCCEEEEEecCCcEEEEEECC-CcceeeE--EecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCC---------
Q psy3710 195 QTGTRLATASYKGTLIRVFDTG-SGQKLNE--LRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPP--------- 262 (424)
Q Consensus 195 ~~~~~l~~~~~d~~~i~iwd~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~--------- 262 (424)
|||.+|.++.-|+. .++|+.. +....+- ..+.+...+|+|.|..++++.+..-.++-..........
T Consensus 248 Pdgd~lfaAt~dav-frlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~ 326 (445)
T KOG2139|consen 248 PDGDVLFAATCDAV-FRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRV 326 (445)
T ss_pred CCCCEEEEecccce-eeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceee
Confidence 99999999999999 9999543 3322222 233477789999999999977655555433322211000
Q ss_pred ---eee-----cc----CCCCeEEEEEcCCCCEEEEEeCCC
Q psy3710 263 ---LDI-----AA----HEAPLSCIALNQTGTRLATASYKG 291 (424)
Q Consensus 263 ---~~~-----~~----~~~~v~~~~~~~~~~~l~~~~~d~ 291 (424)
..+ .. -.+++.+++|+|.|.+||+.-..+
T Consensus 327 lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 327 LLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred eeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 000 01 135667777887777777765544
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-17 Score=146.71 Aligned_cols=258 Identities=17% Similarity=0.203 Sum_probs=187.7
Q ss_pred ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCC
Q psy3710 98 FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADP 174 (424)
Q Consensus 98 ~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~ 174 (424)
|...|+|+.|...+.++.+ |..++||.+. +..++....+|... +..++.+.++.++++ ++.|..|++|.+..+
T Consensus 189 H~naVyca~fDrtg~~Iitgsdd~lvKiwS~e-t~~~lAs~rGhs~d--itdlavs~~n~~iaa-aS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIITGSDDRLVKIWSME-TARCLASCRGHSGD--ITDLAVSSNNTMIAA-ASNDKVIRVWRLPDG 264 (1113)
T ss_pred hhhheeeeeeccccceEeecCccceeeeeecc-chhhhccCCCCccc--cchhccchhhhhhhh-cccCceEEEEecCCC
Confidence 6778999999999988887 7899999986 88899999998855 777888888888887 999999999999997
Q ss_pred CCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc--------eeeeeecCCCCeEEEEeec
Q psy3710 175 ERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG--------LCVLCPNSNNSLLAFPGRK 246 (424)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 246 (424)
.++..+.+|++.|++++|+|-. +.+.||+ +++||.+ ..+....+.+ +..+.+...+. -+.+|+.
T Consensus 265 -~pvsvLrghtgavtaiafsP~~----sss~dgt-~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~-~f~Tgs~ 336 (1113)
T KOG0644|consen 265 -APVSVLRGHTGAVTAIAFSPRA----SSSDDGT-CRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGD-RFLTGSR 336 (1113)
T ss_pred -chHHHHhccccceeeeccCccc----cCCCCCc-eEecccc-ccccccCCCCCCcccccceeeeecccccc-ccccccC
Confidence 8899999999999999999954 7788999 9999998 2111111111 12222222222 2334777
Q ss_pred CCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEECCCCceeeeec------------c-CC
Q psy3710 247 SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTG-TRLATASYKGTLIRVFDTGSGQKLNELR------------R-DS 312 (424)
Q Consensus 247 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~~i~iwd~~~~~~~~~~~------------~-~~ 312 (424)
++.-..|...... .+...+.-+.++.+- .+.+++-.+-. +.+|++.+|..++.+. | +.
T Consensus 337 d~ea~n~e~~~l~-------~~~~~lif~t~ssd~~~~~~~ar~~~~-~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ 408 (1113)
T KOG0644|consen 337 DGEARNHEFEQLA-------WRSNLLIFVTRSSDLSSIVVTARNDHR-LCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNP 408 (1113)
T ss_pred CcccccchhhHhh-------hhccceEEEeccccccccceeeeeeeE-eeeeecccchhhhhhcccccceeeeeecCCCc
Confidence 7776666554321 333333333443332 35666666777 9999999997766432 2 44
Q ss_pred cEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEE
Q psy3710 313 SYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFM 392 (424)
Q Consensus 313 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~ 392 (424)
+...+++.||...|||+-.|.+++... ...+...+.+||+||..++....-|.++|..
T Consensus 409 ri~msag~dgst~iwdi~eg~pik~y~----------------------~gh~kl~d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 409 RIAMSAGYDGSTIIWDIWEGIPIKHYF----------------------IGHGKLVDGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred HhhhhccCCCceEeeecccCCcceeee----------------------cccceeeccccCCCCceEecCCCCCceEEec
Confidence 566789999999999999887655422 2234456789999999999999899999998
Q ss_pred ecCCc
Q psy3710 393 FNSKG 397 (424)
Q Consensus 393 ~~~~~ 397 (424)
...+.
T Consensus 467 ~gqs~ 471 (1113)
T KOG0644|consen 467 TGQSK 471 (1113)
T ss_pred cCCCc
Confidence 76443
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.2e-15 Score=128.27 Aligned_cols=205 Identities=19% Similarity=0.167 Sum_probs=147.1
Q ss_pred EEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEe-eCCCCCeeEEEeecC--CCCeEEEeeccCCeE
Q psy3710 94 ICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFE-TNPNPKGLCVLCPNS--NNSLLAFPGRKSGHV 166 (424)
Q Consensus 94 ~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~l~~~~~~dg~i 166 (424)
+++. |.+.|+++.|+.+|.++++ |-.+.|||.. ..++++.+. +|.. .|.++.|-| +++.+++ |..|..|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~-~~KllhsI~TgHta--NIFsvKFvP~tnnriv~s-gAgDk~i 119 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF-EYKLLHSISTGHTA--NIFSVKFVPYTNNRIVLS-GAGDKLI 119 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecch-hcceeeeeeccccc--ceeEEeeeccCCCeEEEe-ccCcceE
Confidence 3444 8999999999999999987 7799999986 666666654 4443 355555544 4555555 9999999
Q ss_pred EEEeCCCC---------CCCCcccccccCCeEEEEEccCC-CEEEEEecCCcEEEEEECCCcceeeE-E---------e-
Q psy3710 167 HLVDLADP---------ERPPLDIAAHEAPLSCIALNQTG-TRLATASYKGTLIRVFDTGSGQKLNE-L---------R- 225 (424)
Q Consensus 167 ~i~d~~~~---------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~~i~iwd~~~~~~~~~-~---------~- 225 (424)
+++|+... ......+..|...|..++-.|++ ..+.++++||+ |+-+|++....-.. . .
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt-irQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT-IRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc-eeeecccCCccCCccccccHHHHHhch
Confidence 99999852 23455677899999999999988 78999999999 99999986421111 1 0
Q ss_pred --cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCC-----------CC------Ce-eeccCC-----------CCeEE
Q psy3710 226 --RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE-----------RP------PL-DIAAHE-----------APLSC 274 (424)
Q Consensus 226 --~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~-----------~~------~~-~~~~~~-----------~~v~~ 274 (424)
....++.++|....+++.|+.+-..++||.+... .+ +. ...+|- ..++-
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 2257788999999999999999999999954211 00 11 111222 12566
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEECCCCce
Q psy3710 275 IALNQTGTRLATASYKGTLIRVFDTGSGQK 304 (424)
Q Consensus 275 ~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~ 304 (424)
++|+|+|.-|+..-.... |+++|+..++.
T Consensus 279 vtfnpNGtElLvs~~gEh-VYlfdvn~~~~ 307 (758)
T KOG1310|consen 279 VTFNPNGTELLVSWGGEH-VYLFDVNEDKS 307 (758)
T ss_pred EEECCCCcEEEEeeCCeE-EEEEeecCCCC
Confidence 789999976665544444 99999876543
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.6e-15 Score=118.97 Aligned_cols=205 Identities=15% Similarity=0.148 Sum_probs=154.5
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcc---cccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCe
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKE---KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNR 81 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 81 (424)
+.--..+|+|.+|++|+..+|++..+. +.||.....+. ......|+..++.++|+|..+.+++++ .|..
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs-------~drn 78 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCS-------HDRN 78 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEcc-------CCCC
Confidence 334467899999999999999998887 99999766653 444555899999999999999999999 6899
Q ss_pred EEEEEC-CCCcEEEE---EeecCCeEEEEecCCceEEEe---eccEEEEeecCCCce-eEEEeeCCCCCeeEEEeecCCC
Q psy3710 82 VMIWDD-LKKQVVIC---LEFNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQ-LHVFETNPNPKGLCVLCPNSNN 153 (424)
Q Consensus 82 i~iwd~-~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 153 (424)
-++|.. ..++-..+ ++++..++++.|+|....++. ...|.||-++....- +...-.......+.++.|+|++
T Consensus 79 ayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn 158 (361)
T KOG1523|consen 79 AYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN 158 (361)
T ss_pred ccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence 999998 44443333 348999999999999877765 457888877533221 1111112223558899999999
Q ss_pred CeEEEeeccCCeEEEEeCC-----CCC------------CCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECC
Q psy3710 154 SLLAFPGRKSGHVHLVDLA-----DPE------------RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 216 (424)
Q Consensus 154 ~~l~~~~~~dg~i~i~d~~-----~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 216 (424)
-+|++ |+.|+..+++..- ... +.+.++....+.+..+.|+|+|..|+-.+.|.. +.+-|..
T Consensus 159 VLlaa-Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~-v~~~da~ 236 (361)
T KOG1523|consen 159 VLLAA-GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST-VSFVDAA 236 (361)
T ss_pred ceecc-cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc-eEEeecC
Confidence 99998 9999999998642 110 112233345678999999999999999999999 9999876
Q ss_pred Ccc
Q psy3710 217 SGQ 219 (424)
Q Consensus 217 ~~~ 219 (424)
...
T Consensus 237 ~p~ 239 (361)
T KOG1523|consen 237 GPS 239 (361)
T ss_pred CCc
Confidence 653
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-15 Score=127.59 Aligned_cols=277 Identities=12% Similarity=0.101 Sum_probs=197.6
Q ss_pred cccCCceEEEEECCCCCeeE-eecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEE
Q psy3710 7 STYKNGLLYAGFNQDQGCFA-CGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMI 84 (424)
Q Consensus 7 ~~h~~~V~~~~~s~~g~~la-~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 84 (424)
.+|+..-+.|..+|||+|+. +|.-.- |++||+...............|...-++-|-...+..- .|.+|.+
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~-------~DR~Ief 120 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQ-------NDRTIEF 120 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEee-------cCceeee
Confidence 46788889999999998876 565555 99999988877655555455555555555555555555 4788877
Q ss_pred EECCCCcEEEEEeecCCeEEEEecC---CceEEEeeccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeec
Q psy3710 85 WDDLKKQVVICLEFNAPVKGVRLRR---DKIVVVLEGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGR 161 (424)
Q Consensus 85 wd~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (424)
... .-....+..+..-..++++. |-.++++...|+-+++. .++.+..+...... +.++..++...+|++ |+
T Consensus 121 Hak--~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLE-qGrfL~P~~~~~~~--lN~v~in~~hgLla~-Gt 194 (703)
T KOG2321|consen 121 HAK--YGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLE-QGRFLNPFETDSGE--LNVVSINEEHGLLAC-GT 194 (703)
T ss_pred hhh--cCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEcc-cccccccccccccc--ceeeeecCccceEEe-cc
Confidence 642 22333344444555666653 33344447789999997 78888888776644 666777888888888 99
Q ss_pred cCCeEEEEeCCCCCCCCccc------ccccC-----CeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEec----
Q psy3710 162 KSGHVHLVDLADPERPPLDI------AAHEA-----PLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR---- 226 (424)
Q Consensus 162 ~dg~i~i~d~~~~~~~~~~~------~~~~~-----~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~---- 226 (424)
.+|.|..||.+.. ..+..+ ..|.+ .|+++.|+.+|-.+++|..+|. +.|||+++.+++..-..
T Consensus 195 ~~g~VEfwDpR~k-srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~-v~iyDLRa~~pl~~kdh~~e~ 272 (703)
T KOG2321|consen 195 EDGVVEFWDPRDK-SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS-VLIYDLRASKPLLVKDHGYEL 272 (703)
T ss_pred cCceEEEecchhh-hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-EEEEEcccCCceeecccCCcc
Confidence 9999999999875 332222 23333 4999999999999999999999 99999999988765543
Q ss_pred ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCC
Q psy3710 227 GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~ 301 (424)
++..+.|.+.+..-.+...+...++|||-.+++..... .....++.+++-|++.+++++-.+.. +..|=+..
T Consensus 273 pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asi--Ept~~lND~C~~p~sGm~f~Ane~~~-m~~yyiP~ 344 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASI--EPTSDLNDFCFVPGSGMFFTANESSK-MHTYYIPS 344 (703)
T ss_pred ceeeecccccCCCceEEecchHHhhhcccccCCceeec--cccCCcCceeeecCCceEEEecCCCc-ceeEEccc
Confidence 35566665554433333667788999999998743322 34556999999999999999999888 77776554
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=133.65 Aligned_cols=220 Identities=17% Similarity=0.241 Sum_probs=180.6
Q ss_pred CeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe--eccEEEEeecCCCc
Q psy3710 53 GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQ 130 (424)
Q Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~ 130 (424)
.-..+.++.+|..+++.+ ..|.+..+|+.+++...++.....|.++.|-.+..++|. ...++|||- .+.
T Consensus 131 GPY~~~ytrnGrhlllgG-------rKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~--~Gt 201 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGG-------RKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDN--NGT 201 (545)
T ss_pred CCeeeeecCCccEEEecC-------CccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecC--CCc
Confidence 345688888999998877 579999999999999999999999999999888777776 788999994 678
Q ss_pred eeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEE
Q psy3710 131 QLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLI 210 (424)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i 210 (424)
.++.++.+. .+..+.|-|..-+|++ ++..|.++.-|+..+ +.+..+..-.+.+..++-+|-...+-+|...|+ |
T Consensus 202 ElHClk~~~---~v~rLeFLPyHfLL~~-~~~~G~L~Y~DVS~G-klVa~~~t~~G~~~vm~qNP~NaVih~GhsnGt-V 275 (545)
T KOG1272|consen 202 ELHCLKRHI---RVARLEFLPYHFLLVA-ASEAGFLKYQDVSTG-KLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGT-V 275 (545)
T ss_pred EEeehhhcC---chhhhcccchhheeee-cccCCceEEEeechh-hhhHHHHccCCccchhhcCCccceEEEcCCCce-E
Confidence 888887764 3566778887666665 999999999999998 788888888899999999998888888888888 9
Q ss_pred EEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCC
Q psy3710 211 RVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK 290 (424)
Q Consensus 211 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 290 (424)
.+|.....++ ...+..|.++|.++++.++|+|+||++.|
T Consensus 276 SlWSP~skeP-----------------------------------------LvKiLcH~g~V~siAv~~~G~YMaTtG~D 314 (545)
T KOG1272|consen 276 SLWSPNSKEP-----------------------------------------LVKILCHRGPVSSIAVDRGGRYMATTGLD 314 (545)
T ss_pred EecCCCCcch-----------------------------------------HHHHHhcCCCcceEEECCCCcEEeecccc
Confidence 9998765543 33334899999999999999999999999
Q ss_pred CcEEEEEECCCCceeeeec-c--------CCcEEEEEeCCCcEEEEEc
Q psy3710 291 GTLIRVFDTGSGQKLNELR-R--------DSSYLCVSSDHGTVHVFSV 329 (424)
Q Consensus 291 ~~~i~iwd~~~~~~~~~~~-~--------~~~~l~~~~~d~~i~iw~~ 329 (424)
.. ++|||++....+.++. | ..+-+++.+....+.||.-
T Consensus 315 r~-~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 315 RK-VKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWKD 361 (545)
T ss_pred cc-eeEeeeccccccceeecCCCccccccccccceeeecCCeeeeehh
Confidence 99 9999999887776643 2 2344555666678999963
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-14 Score=130.96 Aligned_cols=232 Identities=13% Similarity=0.057 Sum_probs=157.0
Q ss_pred EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCce
Q psy3710 33 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKI 112 (424)
Q Consensus 33 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (424)
|.++|.+...... ...+...+....|+|+++.+++++... .+..+.+|++.+++........+.+..+.|+||+.
T Consensus 181 l~~~d~dg~~~~~-lt~~~~~~~~p~wSPDG~~la~~s~~~----g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 181 LRVSDYDGYNQFV-VHRSPQPLMSPAWSPDGSKLAYVTFES----GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred EEEEcCCCCCCEE-eecCCCceeeeEEcCCCCEEEEEEecC----CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCC
Confidence 8888877655433 233456788999999999999876432 24689999998887655444556667799999997
Q ss_pred EEEe----ec--cEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEE--eCCCCCCCCcccccc
Q psy3710 113 VVVL----EG--LIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLV--DLADPERPPLDIAAH 184 (424)
Q Consensus 113 ~~~~----~~--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~--d~~~~~~~~~~~~~~ 184 (424)
.++. ++ .|++||+. +++.. .+.... .......|+|||+.|+++...++...+| |+.++ ....+..+
T Consensus 256 ~La~~~~~~g~~~I~~~d~~-tg~~~-~lt~~~--~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g--~~~~lt~~ 329 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLA-SGQIR-QVTDGR--SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG--APQRITWE 329 (429)
T ss_pred EEEEEEcCCCCcEEEEEECC-CCCEE-EccCCC--CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC--CeEEeecC
Confidence 6663 33 58888885 44433 332222 2356789999999998744445555555 55553 33344434
Q ss_pred cCCeEEEEEccCCCEEEEEecC---CcEEEEEECCCcceeeEEecc--eeeeeecCCCCeEEEEeecCC--eEEEEeCCC
Q psy3710 185 EAPLSCIALNQTGTRLATASYK---GTLIRVFDTGSGQKLNELRRG--LCVLCPNSNNSLLAFPGRKSG--HVHLVDLAD 257 (424)
Q Consensus 185 ~~~v~~~~~~~~~~~l~~~~~d---~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~ 257 (424)
........|+|||++++..+.+ .. |.+||+.+++.. .+... .....|+|++..+++++...+ .++++++..
T Consensus 330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~-I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 330 GSQNQDADVSSDGKFMVMVSSNGGQQH-IAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred CCCccCEEECCCCCEEEEEEccCCCce-EEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 4456678999999999876643 34 888999887643 33322 345679999999998665443 367777754
Q ss_pred CCCCCeeeccCCCCeEEEEEcC
Q psy3710 258 PERPPLDIAAHEAPLSCIALNQ 279 (424)
Q Consensus 258 ~~~~~~~~~~~~~~v~~~~~~~ 279 (424)
.. ...+..|.+.+...+|+|
T Consensus 408 ~~--~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 408 RF--KARLPATDGQVKFPAWSP 427 (429)
T ss_pred CC--eEECccCCCCcCCcccCC
Confidence 33 344557888899999987
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.8e-15 Score=116.45 Aligned_cols=157 Identities=17% Similarity=0.260 Sum_probs=112.7
Q ss_pred eEEEeecCCCCeEEEeecc---------CCeEEEEeCCCCCCCCccccc-ccCCeEEEEEccCCCEEEEE--ecCCcEEE
Q psy3710 144 LCVLCPNSNNSLLAFPGRK---------SGHVHLVDLADPERPPLDIAA-HEAPLSCIALNQTGTRLATA--SYKGTLIR 211 (424)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~---------dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~d~~~i~ 211 (424)
-+.+.|+++|.+|++.... -|...+|.++....+...+.- ..++|.+++|+|+|+.+++. ..+.. |.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~-v~ 86 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK-VT 86 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcc-cE
Confidence 4568899999888774431 245667766544345555543 34579999999999987654 35677 99
Q ss_pred EEECCCcceeeEEec-ceeeeeecCCCCeEEEEee--cCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEe
Q psy3710 212 VFDTGSGQKLNELRR-GLCVLCPNSNNSLLAFPGR--KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS 288 (424)
Q Consensus 212 iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 288 (424)
+||++ ++.+..+.. ....+.|+|+|+.++++|. ..|.|.+||.++.+.. .. .+...++.++|+|||++|+++.
T Consensus 87 lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i-~~--~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 87 LYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI-ST--FEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred EEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe-ec--cccCcEEEEEEcCCCCEEEEEE
Confidence 99996 677777764 4678999999999999763 4678999999965532 22 2334578999999999999987
Q ss_pred C------CCcEEEEEECCCCceeee
Q psy3710 289 Y------KGTLIRVFDTGSGQKLNE 307 (424)
Q Consensus 289 ~------d~~~i~iwd~~~~~~~~~ 307 (424)
. |.. ++||+.. |+.+..
T Consensus 163 t~~r~~~dng-~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 163 TSPRLRVDNG-FKIWSFQ-GRLLYK 185 (194)
T ss_pred eccceecccc-EEEEEec-CeEeEe
Confidence 5 455 7777764 544443
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-12 Score=110.11 Aligned_cols=296 Identities=11% Similarity=0.106 Sum_probs=182.3
Q ss_pred ccccccCCceEEEEECCCCCeeEe-----e-cCCe--EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcC-
Q psy3710 4 GTSSTYKNGLLYAGFNQDQGCFAC-----G-MEDG--FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTH- 74 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~g~~la~-----g-~~~~--i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~- 74 (424)
.++..|-+-|+-..|+|+|+.+|. | +.++ +.+.+.+.++.....-+...-.....|.|+++.+++...-+-
T Consensus 72 ~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF 151 (668)
T COG4946 72 LRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPF 151 (668)
T ss_pred eEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEeccccceeeccCCCCCEEEEeccCCCc
Confidence 346778888999999999998885 2 2233 888888888774433221222233567888887766542210
Q ss_pred ----------------------C----CcCCCeEE---------------------EEECC-CCcEEEEE-eecCCeEEE
Q psy3710 75 ----------------------P----KYPNNRVM---------------------IWDDL-KKQVVICL-EFNAPVKGV 105 (424)
Q Consensus 75 ----------------------~----~~~d~~i~---------------------iwd~~-~~~~~~~~-~~~~~v~~~ 105 (424)
| -+.|+.+. +|--. .|+....+ ...+.|.+-
T Consensus 152 ~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~P 231 (668)
T COG4946 152 SQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSP 231 (668)
T ss_pred ccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCc
Confidence 0 01223222 12111 11111111 133444444
Q ss_pred EecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCC------
Q psy3710 106 RLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERP------ 177 (424)
Q Consensus 106 ~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~------ 177 (424)
..-.+..++.+ +|.=.+|..+-.++-++ .|.+-..-.+-..+.||+.++. +..|.|.+||..+..-.
T Consensus 232 mIV~~RvYFlsD~eG~GnlYSvdldGkDlr---rHTnFtdYY~R~~nsDGkrIvF--q~~GdIylydP~td~lekldI~l 306 (668)
T COG4946 232 MIVGERVYFLSDHEGVGNLYSVDLDGKDLR---RHTNFTDYYPRNANSDGKRIVF--QNAGDIYLYDPETDSLEKLDIGL 306 (668)
T ss_pred eEEcceEEEEecccCccceEEeccCCchhh---hcCCchhccccccCCCCcEEEE--ecCCcEEEeCCCcCcceeeecCC
Confidence 44445555555 44444444432333332 2222222233455778999887 66788999987653100
Q ss_pred -Cc--------------------------------------------ccccccCCeEEEEEccCCCEEEEEecCCcEEEE
Q psy3710 178 -PL--------------------------------------------DIAAHEAPLSCIALNQTGTRLATASYKGTLIRV 212 (424)
Q Consensus 178 -~~--------------------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~i 212 (424)
+. .-.+|.+.|.-..+..+++-++.|..||..+-+
T Consensus 307 pl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~i 386 (668)
T COG4946 307 PLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGI 386 (668)
T ss_pred ccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEE
Confidence 00 001344556666666677778888888844999
Q ss_pred EECCCcceeeEEe--cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCC
Q psy3710 213 FDTGSGQKLNELR--RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK 290 (424)
Q Consensus 213 wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 290 (424)
+|.++++.....+ +.+..+..+++|+.+++ +.....|.++|+.++... ..-+...+-|+..+|||+++++|-+-.+
T Consensus 387 yd~~~~e~kr~e~~lg~I~av~vs~dGK~~vv-aNdr~el~vididngnv~-~idkS~~~lItdf~~~~nsr~iAYafP~ 464 (668)
T COG4946 387 YDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVV-ANDRFELWVIDIDNGNVR-LIDKSEYGLITDFDWHPNSRWIAYAFPE 464 (668)
T ss_pred EecCCceEEEeeCCccceEEEEEcCCCcEEEE-EcCceEEEEEEecCCCee-EecccccceeEEEEEcCCceeEEEecCc
Confidence 9998887544333 34788899999998887 888899999999998732 2223566789999999999999999887
Q ss_pred CcE---EEEEECCCCceee
Q psy3710 291 GTL---IRVFDTGSGQKLN 306 (424)
Q Consensus 291 ~~~---i~iwd~~~~~~~~ 306 (424)
|.. |+++|+..++...
T Consensus 465 gy~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 465 GYYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred ceeeeeEEEEecCCCeEEE
Confidence 633 9999999887665
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.1e-15 Score=126.69 Aligned_cols=196 Identities=17% Similarity=0.195 Sum_probs=145.2
Q ss_pred CCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcce---eeEEeccee
Q psy3710 153 NSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK---LNELRRGLC 229 (424)
Q Consensus 153 ~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~---~~~~~~~~~ 229 (424)
...++. ++.||.+.+.+-.. +....+.+|.+.+.+-.|+|+|.-|+++++||. |++|.- +|.. +.+....+.
T Consensus 75 ~d~~~i-~s~DGkf~il~k~~--rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~-iKiWSr-sGMLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 75 SDTLLI-CSNDGRFVILNKSA--RVERSISAHAAAISSGRWSPDGAGLLTAGEDGV-IKIWSR-SGMLRSTVVQNEESIR 149 (737)
T ss_pred cceEEE-EcCCceEEEecccc--hhhhhhhhhhhhhhhcccCCCCceeeeecCCce-EEEEec-cchHHHHHhhcCceeE
Confidence 345666 89999999987654 667788999999999999999999999999999 999985 4432 344556789
Q ss_pred eeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeee--
Q psy3710 230 VLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE-- 307 (424)
Q Consensus 230 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~-- 307 (424)
+++|.|+...++++. .+.+.|=.+.... .+...++|++-|.++.|+|..+.+++|+.|-. .++||... ..+..
T Consensus 150 c~~W~p~S~~vl~c~--g~h~~IKpL~~n~-k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD~~G-~~Lf~S~ 224 (737)
T KOG1524|consen 150 CARWAPNSNSIVFCQ--GGHISIKPLAANS-KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWDAQG-ANLFTSA 224 (737)
T ss_pred EEEECCCCCceEEec--CCeEEEeeccccc-ceeEEeccCcEEEEeecCccccceeecCCcee-EEeecccC-cccccCC
Confidence 999999999999854 4556665555433 24456699999999999999999999999999 99999863 33322
Q ss_pred ----------eccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCC
Q psy3710 308 ----------LRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSN 377 (424)
Q Consensus 308 ----------~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 377 (424)
|.|+ +.++.++. .++++=. ...+.+-.++||+||.
T Consensus 225 ~~ey~ITSva~npd-~~~~v~S~-nt~R~~~---------------------------------p~~GSifnlsWS~DGT 269 (737)
T KOG1524|consen 225 AEEYAITSVAFNPE-KDYLLWSY-NTARFSS---------------------------------PRVGSIFNLSWSADGT 269 (737)
T ss_pred hhccceeeeeeccc-cceeeeee-eeeeecC---------------------------------CCccceEEEEEcCCCc
Confidence 3344 22332221 1222100 1135677889999999
Q ss_pred eEEEEeccCcEEEEEe
Q psy3710 378 SIIVICADGSYYKFMF 393 (424)
Q Consensus 378 ~l~~~~~dg~v~~~~~ 393 (424)
.++.|+..|.+.+=..
T Consensus 270 Q~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 270 QATCGTSTGQLIVAYA 285 (737)
T ss_pred eeeccccCceEEEeee
Confidence 9999999998776443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-13 Score=125.41 Aligned_cols=207 Identities=14% Similarity=0.171 Sum_probs=137.4
Q ss_pred CeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecC---CcEEEEEECCCcceeeE--EecceeeeeecCCCC
Q psy3710 164 GHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK---GTLIRVFDTGSGQKLNE--LRRGLCVLCPNSNNS 238 (424)
Q Consensus 164 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~ 238 (424)
..|.++|... .....+..+...+.+.+|+|||+.|+..+.+ .. |.+||+.+++.... ++.......|+|++.
T Consensus 176 ~~L~~~D~dG--~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~-I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDADG--QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPV-VYVHDLATGRRRVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCCC--CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcE-EEEEECCCCCEEEeecCCCCccceEECCCCC
Confidence 4577777654 4445555677889999999999999877643 45 99999988865432 344456789999999
Q ss_pred eEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEE--ECCCCcee----------
Q psy3710 239 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY-KGTLIRVF--DTGSGQKL---------- 305 (424)
Q Consensus 239 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~~i~iw--d~~~~~~~---------- 305 (424)
.++++.+.+|...+|.+.........+..+........|+|||+.|+..+. ++. ..+| ++.+++..
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~-~~Iy~~~~~~g~~~~lt~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA-PQIYRMPASGGAAQRVTFTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCC-cEEEEEECCCCceEEEecCCCCcC
Confidence 999888888876666543322223444455556677899999998887665 344 5555 44444321
Q ss_pred -eeeccCCcEEEEEeCCC---cEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEE
Q psy3710 306 -NELRRDSSYLCVSSDHG---TVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIV 381 (424)
Q Consensus 306 -~~~~~~~~~l~~~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 381 (424)
..|+|+|++++..+.++ .|.+||+.+++... +.. ........|+|||++|+.
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-----------------------~~~~~~p~~spdg~~l~~ 387 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-----------------------TTRDESPSFAPNGRYILY 387 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-----------------------CCCccCceECCCCCEEEE
Confidence 24789999998877654 69999998865321 110 011134589999999988
Q ss_pred EeccC-cEEEEEecCCcc
Q psy3710 382 ICADG-SYYKFMFNSKGE 398 (424)
Q Consensus 382 ~~~dg-~v~~~~~~~~~~ 398 (424)
++.++ .-.+|-++..+.
T Consensus 388 ~~~~~g~~~l~~~~~~g~ 405 (427)
T PRK02889 388 ATQQGGRSVLAAVSSDGR 405 (427)
T ss_pred EEecCCCEEEEEEECCCC
Confidence 77654 333444443443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-14 Score=128.89 Aligned_cols=233 Identities=13% Similarity=0.059 Sum_probs=153.9
Q ss_pred EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCce
Q psy3710 33 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKI 112 (424)
Q Consensus 33 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (424)
|.+||.+...... ...+...+....|+|+++.+++++... .+..|.+||+.+++......+.+...+.+|+||+.
T Consensus 186 l~i~D~~g~~~~~-lt~~~~~v~~p~wSpDg~~la~~s~~~----~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 186 LQVADSDGYNPQT-ILRSAEPILSPAWSPDGKKLAYVSFER----GRSAIYVQDLATGQRELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEECCCCCCceE-eecCCCccccccCCCCCCEEEEEecCC----CCcEEEEEECCCCCEEEeccCCCCccCceECCCCC
Confidence 8899976544332 333466788899999999999887432 24689999998887654433555666889999996
Q ss_pred EEEe----ec--cEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCe--EEEEeCCCCCCCCcccccc
Q psy3710 113 VVVL----EG--LIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGH--VHLVDLADPERPPLDIAAH 184 (424)
Q Consensus 113 ~~~~----~~--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~--i~i~d~~~~~~~~~~~~~~ 184 (424)
.++. ++ .|++||+. +++ ...+..+. ......+|+||++.|+++...+|. |.++++.++ + ...+..+
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~-~g~-~~~lt~~~--~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g-~-~~~lt~~ 334 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLG-SRQ-LTRLTNHF--GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG-S-AERLTFQ 334 (433)
T ss_pred EEEEEEeCCCCceEEEEECC-CCC-eEECccCC--CCccceEECCCCCEEEEEECCCCCceEEEEECCCC-C-eEEeecC
Confidence 5542 33 58889985 443 33333332 123457899999999884545555 666666654 2 2223223
Q ss_pred cCCeEEEEEccCCCEEEEEecCC---cEEEEEECCCcceeeEEec-ceeeeeecCCCCeEEEEeecC--CeEEEEeCCCC
Q psy3710 185 EAPLSCIALNQTGTRLATASYKG---TLIRVFDTGSGQKLNELRR-GLCVLCPNSNNSLLAFPGRKS--GHVHLVDLADP 258 (424)
Q Consensus 185 ~~~v~~~~~~~~~~~l~~~~~d~---~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d--g~i~i~d~~~~ 258 (424)
......++|+|+|++++..+.++ . |.+||+.+++...-... ......++|++..++++.... +.|+++++...
T Consensus 335 g~~~~~~~~SpDG~~Ia~~~~~~~~~~-I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 335 GNYNARASVSPDGKKIAMVHGSGGQYR-IAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCCccCEEECCCCCEEEEEECCCCcee-EEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 34455789999999998765443 5 89999988765422222 234568999999998876654 35777777543
Q ss_pred CCCCeeeccCCCCeEEEEEcC
Q psy3710 259 ERPPLDIAAHEAPLSCIALNQ 279 (424)
Q Consensus 259 ~~~~~~~~~~~~~v~~~~~~~ 279 (424)
....+..+.+.+...+|+|
T Consensus 414 --~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 --VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred --ceEEcccCCCCCCCCccCC
Confidence 2344445566777788876
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.2e-14 Score=111.63 Aligned_cols=188 Identities=15% Similarity=0.203 Sum_probs=153.3
Q ss_pred CeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCC--CCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCC-c
Q psy3710 142 KGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE--RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS-G 218 (424)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~-~ 218 (424)
..+.+.+|++|+..+++ +..+..|.||.....+ +...++..|...|+.++|+|..+.|++++.|.. -++|.... +
T Consensus 11 ~pitchAwn~drt~iAv-~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn-ayVw~~~~~~ 88 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAV-SPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN-AYVWTQPSGG 88 (361)
T ss_pred CceeeeeecCCCceEEe-ccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC-ccccccCCCC
Confidence 44889999999999998 8899999999988753 456788999999999999999999999999999 99999843 3
Q ss_pred c-----eeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCC---CeeeccCCCCeEEEEEcCCCCEEEEEeCC
Q psy3710 219 Q-----KLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERP---PLDIAAHEAPLSCIALNQTGTRLATASYK 290 (424)
Q Consensus 219 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 290 (424)
+ .+.++.....++.++|.+..+++ |+....|.+|-++....- ...-+.+.+.|+++.|+|++-+|++|+.|
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAV-gSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAV-GSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEe-ccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence 2 33455667889999999999888 888889999888765421 12233678899999999999999999999
Q ss_pred CcEEEEEECCC------------------Cceee------------eeccCCcEEEEEeCCCcEEEEEccccc
Q psy3710 291 GTLIRVFDTGS------------------GQKLN------------ELRRDSSYLCVSSDHGTVHVFSVDEAQ 333 (424)
Q Consensus 291 ~~~i~iwd~~~------------------~~~~~------------~~~~~~~~l~~~~~d~~i~iw~~~~~~ 333 (424)
+. .|++...- |+++. .|+|.|..|+-.+.|+.+.+-|.....
T Consensus 168 ~k-~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 168 GK-CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cc-eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 99 99996521 11111 367889999999999999999987754
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.3e-14 Score=127.76 Aligned_cols=209 Identities=13% Similarity=0.035 Sum_probs=136.5
Q ss_pred ccccCCceEEEEECCCCCeeEeecC---Ce-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCe
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGME---DG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNR 81 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~---~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 81 (424)
+..+...+.+.+|||||+.||..+. +. +.+|++.+++....... .+......|+|+++.++++.... .+..
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-~~~~~~~~~SPDG~~La~~~~~~----g~~~ 268 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-PRHNGAPAFSPDGSKLAFALSKT----GSLN 268 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-CCCcCCeEECCCCCEEEEEEcCC----CCcE
Confidence 5556778999999999999985432 22 99999988765332222 34455789999999998875321 2346
Q ss_pred EEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe----eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEE
Q psy3710 82 VMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL----EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLA 157 (424)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (424)
|++||+++++..........+....|+||+..++. ++...+|.+.........+.... .......|+|||++|+
T Consensus 269 I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~--~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 269 LYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEG--SQNQDADVSSDGKFMV 346 (429)
T ss_pred EEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCC--CCccCEEECCCCCEEE
Confidence 99999988876654445567788999999976654 34455554432222333333222 1234578899999998
Q ss_pred EeeccC--CeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCc--EEEEEECCCcceeeEEe
Q psy3710 158 FPGRKS--GHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGT--LIRVFDTGSGQKLNELR 225 (424)
Q Consensus 158 ~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--~i~iwd~~~~~~~~~~~ 225 (424)
+++..+ ..|.+||+.++ . ...+... .......|+|||+.|+.++.++. .+.++++ +++....+.
T Consensus 347 ~~~~~~g~~~I~~~dl~~g-~-~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~ 414 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLATG-G-VQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLP 414 (429)
T ss_pred EEEccCCCceEEEEECCCC-C-eEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECc
Confidence 844444 35888998875 2 2333221 22356789999999999887764 2566676 444444443
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.1e-14 Score=114.19 Aligned_cols=273 Identities=12% Similarity=0.177 Sum_probs=169.6
Q ss_pred cCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcc-----ccccccc------------CCCeeeEEEeccCce--EEE
Q psy3710 9 YKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKE-----KERQDFT------------DGGLGHVEMLFRCNY--LAL 68 (424)
Q Consensus 9 h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~-----~~~~~~~------------~~~i~~~~~~~~~~~--l~~ 68 (424)
..+-|.++.|..+|.+||+|..+| |.+|.-+.... ....+.| ...|..+.|.++++. +++
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 346789999999999999999999 88887443221 0111111 357888999988754 333
Q ss_pred EeCCcCCCcCCCeEEEEECCCCcEEE-EEee-----cCCeEEEEecCCceEEEeeccEEEEeecCC-----CceeEEEee
Q psy3710 69 VGGGTHPKYPNNRVMIWDDLKKQVVI-CLEF-----NAPVKGVRLRRDKIVVVLEGLIKVYTFIQC-----PQQLHVFET 137 (424)
Q Consensus 69 ~~~~~~~~~~d~~i~iwd~~~~~~~~-~~~~-----~~~v~~~~~~~~~~~~~~~~~i~v~~~~~~-----~~~~~~~~~ 137 (424)
.+ .|++|++|.+....... .... ...+.++ ++--+.+. ..+. ..-.
T Consensus 104 st-------NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~l---------------r~p~~~~~~~~vea~pr-Rv~a 160 (433)
T KOG1354|consen 104 ST-------NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSL---------------RLPVEGRHDLEVEASPR-RVYA 160 (433)
T ss_pred ec-------CCcceeeeeeeccccccccccccccCCCCcccee---------------eceeeccccceeeeeee-eecc
Confidence 33 58999999875443322 1111 1111111 11111100 0111 1223
Q ss_pred CCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcc-------cccccCCeEEEEEccC-CCEEEEEecCCcE
Q psy3710 138 NPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD-------IAAHEAPLSCIALNQT-GTRLATASYKGTL 209 (424)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~v~~~~~~~~-~~~l~~~~~d~~~ 209 (424)
+.+...+.+++++.|...+++ ..|=.|.+|+++-..+.... +..-..-|++..|+|. .+.++-.+..|+
T Consensus 161 NaHtyhiNSIS~NsD~Et~lS--ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt- 237 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLS--ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT- 237 (433)
T ss_pred ccceeEeeeeeecCccceEee--ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc-
Confidence 445567889999999998885 77889999998754332221 2222345888999995 467788888899
Q ss_pred EEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeC
Q psy3710 210 IRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY 289 (424)
Q Consensus 210 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 289 (424)
|++-|++....-. ..-+++...........+.+--..|..+.|+++|+++++-+.
T Consensus 238 IrLcDmR~~aLCd-------------------------~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy 292 (433)
T KOG1354|consen 238 IRLCDMRQSALCD-------------------------AHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY 292 (433)
T ss_pred EEEeechhhhhhc-------------------------chhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc
Confidence 9999998543210 011111111111111122234467899999999999998665
Q ss_pred CCcEEEEEECC-CCceeee---------------------------eccCCcEEEEEeCCCcEEEEEcccccc
Q psy3710 290 KGTLIRVFDTG-SGQKLNE---------------------------LRRDSSYLCVSSDHGTVHVFSVDEAQK 334 (424)
Q Consensus 290 d~~~i~iwd~~-~~~~~~~---------------------------~~~~~~~l~~~~~d~~i~iw~~~~~~~ 334 (424)
-. |++||+. ..+++.+ ++.++.++++|+....+++|++..|..
T Consensus 293 lt--vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 293 LT--VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred ce--eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 54 9999994 4444443 346778999999999999999776644
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-14 Score=123.00 Aligned_cols=182 Identities=10% Similarity=0.120 Sum_probs=118.7
Q ss_pred CCCCeeEeecCCe-EEEEeCCcCccccc----ccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEE
Q psy3710 20 QDQGCFACGMEDG-FRIYNCDPLKEKER----QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVI 94 (424)
Q Consensus 20 ~~g~~la~g~~~~-i~iw~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 94 (424)
|++--|.+|-.-| +.+.|....+.... .......++++.|.|.++.+++++. .++.++++|.+
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~------~sGnlyly~~~------ 250 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAH------ASGNLYLYDKE------ 250 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEE------ecCceEEeecc------
Confidence 4555566666666 77777544222111 1124578999999999988888775 47999999861
Q ss_pred EEeecCCeEEEEecCCceEEEeeccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCC
Q psy3710 95 CLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADP 174 (424)
Q Consensus 95 ~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~ 174 (424)
+.....-.+....+++..++ |..|.-..+..++..+.... ..+..++|+|||++||+ -+.||.++|||..+.
T Consensus 251 -~~~~~t~p~~~~~k~~~~f~----i~t~ksk~~rNPv~~w~~~~--g~in~f~FS~DG~~LA~-VSqDGfLRvF~fdt~ 322 (636)
T KOG2394|consen 251 -IVCGATAPSYQALKDGDQFA----ILTSKSKKTRNPVARWHIGE--GSINEFAFSPDGKYLAT-VSQDGFLRIFDFDTQ 322 (636)
T ss_pred -ccccCCCCcccccCCCCeeE----EeeeeccccCCccceeEecc--ccccceeEcCCCceEEE-EecCceEEEeeccHH
Confidence 11111111111122222222 11121111223333333323 24778999999999999 999999999999985
Q ss_pred CCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeE
Q psy3710 175 ERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE 223 (424)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~ 223 (424)
+.+-.++..-+...|++|+|||++|++|++|.- |.||.+...+.+..
T Consensus 323 -eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDL-VtVwSf~erRVVAR 369 (636)
T KOG2394|consen 323 -ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDL-VTVWSFEERRVVAR 369 (636)
T ss_pred -HHHHHHHhhccceEEEEEcCCccEEEecCCcce-EEEEEeccceEEEe
Confidence 555566666788999999999999999999999 99999987765543
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-15 Score=125.38 Aligned_cols=271 Identities=12% Similarity=0.148 Sum_probs=197.8
Q ss_pred ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCC
Q psy3710 98 FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADP 174 (424)
Q Consensus 98 ~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~ 174 (424)
|.+.|..+.|+..|..+++ |..|.+||+......+.-..+|.....-..+.+..+...+++ ++.||.+++=.+...
T Consensus 141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~-~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVT-SSRDGQVRVSEILET 219 (559)
T ss_pred CCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCcee-ccccCceeeeeeccc
Confidence 7899999999999988887 789999999733333444445554444444555556777887 899999998776543
Q ss_pred CC--CCcccccccCCeEEEEEccCC-CEEEEEecCCcEEEEEECCCcceeeEEe---------cceeeeeecCCCCeEEE
Q psy3710 175 ER--PPLDIAAHEAPLSCIALNQTG-TRLATASYKGTLIRVFDTGSGQKLNELR---------RGLCVLCPNSNNSLLAF 242 (424)
Q Consensus 175 ~~--~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 242 (424)
+. ....+..|.++|.-++.-|+. ..|.+++.|+. +.-+|++.+.+...+. .....++..|.+.+.++
T Consensus 220 ~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~-v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~fa 298 (559)
T KOG1334|consen 220 GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAV-VFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFA 298 (559)
T ss_pred cceecceecccccCccceeeecCCCCCcccccccccc-eeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccc
Confidence 22 234567899999999999865 57899999999 9999998875543332 12567888999998888
Q ss_pred EeecCCeEEEEeCCCCCCC-----Ceee------ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCce-------
Q psy3710 243 PGRKSGHVHLVDLADPERP-----PLDI------AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK------- 304 (424)
Q Consensus 243 ~~~~dg~i~i~d~~~~~~~-----~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~------- 304 (424)
+|+.|-.+++||.+.-... +..+ ......|++++|+.++.-|+++-.|-. |+++.-.-+.-
T Consensus 299 VgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~-IYLF~~~~~~G~~p~~~s 377 (559)
T KOG1334|consen 299 VGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED-IYLFNKSMGDGSEPDPSS 377 (559)
T ss_pred cCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc-eEEeccccccCCCCCCCc
Confidence 8999999999999864322 1111 123456999999987776666666666 99995432211
Q ss_pred -----ee----------------eeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeec
Q psy3710 305 -----LN----------------ELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIP 363 (424)
Q Consensus 305 -----~~----------------~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (424)
+. -|-|...|+++|++-|.|.||+-.+++.++-+.+-
T Consensus 378 ~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD---------------------- 435 (559)
T KOG1334|consen 378 PREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD---------------------- 435 (559)
T ss_pred chhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc----------------------
Confidence 11 13467889999999999999999998877654432
Q ss_pred CCCceEEEEecCCCeEEEEeccCcEEEEEe
Q psy3710 364 SDPPCICAFGADSNSIIVICADGSYYKFMF 393 (424)
Q Consensus 364 ~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~ 393 (424)
.+.|.++--+|--..||+.+-|.-|+||.-
T Consensus 436 r~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 436 RHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred cceEeccCCCCCCchhhccCCccceeeecC
Confidence 223455555677788999999999999986
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=6e-14 Score=111.67 Aligned_cols=130 Identities=17% Similarity=0.320 Sum_probs=91.2
Q ss_pred eEEEEeCCCCCCCCeeec-cCCCCeEEEEEcCCCCEEEEE--eCCCcEEEEEECCCCceee----------eeccCCcEE
Q psy3710 249 HVHLVDLADPERPPLDIA-AHEAPLSCIALNQTGTRLATA--SYKGTLIRVFDTGSGQKLN----------ELRRDSSYL 315 (424)
Q Consensus 249 ~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~--~~d~~~i~iwd~~~~~~~~----------~~~~~~~~l 315 (424)
...+|.++....+...+. ...++|.+++|+|+|+.+|+. ..+.. |.+||++ ++.+. .|+|+|++|
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~-v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l 115 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK-VTLYDVK-GKKIFSFGTQPRNTISWSPDGRFL 115 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcc-cEEEcCc-ccEeEeecCCCceEEEECCCCCEE
Confidence 444555544333344332 345579999999999987665 35667 9999997 44443 367999999
Q ss_pred EEEeCC---CcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEec------cC
Q psy3710 316 CVSSDH---GTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICA------DG 386 (424)
Q Consensus 316 ~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------dg 386 (424)
++++.+ |.|.+||+++.+.+.... ...++.++|+|||++|++++. |+
T Consensus 116 ~~~g~~n~~G~l~~wd~~~~~~i~~~~------------------------~~~~t~~~WsPdGr~~~ta~t~~r~~~dn 171 (194)
T PF08662_consen 116 VLAGFGNLNGDLEFWDVRKKKKISTFE------------------------HSDATDVEWSPDGRYLATATTSPRLRVDN 171 (194)
T ss_pred EEEEccCCCcEEEEEECCCCEEeeccc------------------------cCcEEEEEEcCCCCEEEEEEeccceeccc
Confidence 998754 679999999876654322 123578999999999999875 78
Q ss_pred cEEEEEecCCcceeeeeeh
Q psy3710 387 SYYKFMFNSKGECWRDVYI 405 (424)
Q Consensus 387 ~v~~~~~~~~~~~~~~~~~ 405 (424)
.++||++. +..+.+....
T Consensus 172 g~~Iw~~~-G~~l~~~~~~ 189 (194)
T PF08662_consen 172 GFKIWSFQ-GRLLYKKPFD 189 (194)
T ss_pred cEEEEEec-CeEeEecchh
Confidence 99999995 4444444333
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-13 Score=122.52 Aligned_cols=202 Identities=10% Similarity=0.066 Sum_probs=137.6
Q ss_pred CCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe------eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCC
Q psy3710 79 NNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL------EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSN 152 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (424)
...|.++|...........+...+...+|+||+..++. +..|.+||+. +++. ..+.... ..+....|+||
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~-~g~~-~~l~~~~--g~~~~~~~SPD 256 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLE-TGQR-ELVGNFP--GMTFAPRFSPD 256 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECC-CCcE-EEeecCC--CcccCcEECCC
Confidence 35899999855444333347789999999999977664 3579999986 4443 2333333 23456789999
Q ss_pred CCeEEEeeccCCe--EEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecC---CcEEEEEECCCcceeeEEe--
Q psy3710 153 NSLLAFPGRKSGH--VHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK---GTLIRVFDTGSGQKLNELR-- 225 (424)
Q Consensus 153 ~~~l~~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~~i~iwd~~~~~~~~~~~-- 225 (424)
|+.|+++.+.++. |.+||+.++ ....+..+........|+|||+.|+..+.. .. |+++|+.+++......
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~--~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~-Iy~~d~~g~~~~~lt~~~ 333 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSG--TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQ-LYVMNADGSNPRRISFGG 333 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCC--ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCe-EEEEECCCCCeEEeecCC
Confidence 9998875666655 677788764 345565666667789999999998877642 25 8888987665433222
Q ss_pred cceeeeeecCCCCeEEEEeecCC--eEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCC
Q psy3710 226 RGLCVLCPNSNNSLLAFPGRKSG--HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK 290 (424)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 290 (424)
.......++|+++.++++....+ .|.+||+..+.. ..+. ....+..+.|+|||+.|+..+.+
T Consensus 334 ~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--~~lt-~~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 334 GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--RILT-SGFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--Eecc-CCCCCCCCeECCCCCEEEEEEcc
Confidence 23455789999999998664443 688888765432 2221 22346778999999988776654
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.1e-14 Score=116.03 Aligned_cols=245 Identities=13% Similarity=0.171 Sum_probs=179.6
Q ss_pred CCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEE------e-ecCCeEEEEecCCceEEEe-eccEEE
Q psy3710 51 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICL------E-FNAPVKGVRLRRDKIVVVL-EGLIKV 122 (424)
Q Consensus 51 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~------~-~~~~v~~~~~~~~~~~~~~-~~~i~v 122 (424)
...+..+.|.-+++.-+..+.. .|..+..+........... . ...+|..++....-.+.+. +|.+.+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~-----~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARS-----ADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhheeecCCceeEeeccc-----cCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEE
Confidence 4467777887777655555542 3566777766655554443 1 3566777777665555555 899999
Q ss_pred EeecCC---CceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccC--CeEEEEeCCCCCCCCccccc---------ccCCe
Q psy3710 123 YTFIQC---PQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKS--GHVHLVDLADPERPPLDIAA---------HEAPL 188 (424)
Q Consensus 123 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d--g~i~i~d~~~~~~~~~~~~~---------~~~~v 188 (424)
|..+.. ...+..+..+ .+...+.-++....++++|+.. ..+.+||++.. +.+.+-+. -.-.+
T Consensus 130 ~~~k~~d~hss~l~~la~g---~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~ 205 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG---PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWI 205 (412)
T ss_pred EeccCCccccccceeeecC---CceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCCCccccceeeeee
Confidence 998622 2333344433 2355666677777777779998 89999999875 33222111 12346
Q ss_pred EEEEEccC--CCEEEEEecCCcEEEEEECCCc-ceeeEEe---cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCC
Q psy3710 189 SCIALNQT--GTRLATASYKGTLIRVFDTGSG-QKLNELR---RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPP 262 (424)
Q Consensus 189 ~~~~~~~~--~~~l~~~~~d~~~i~iwd~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~ 262 (424)
+++.|-+. ...|++++.-+. +++||.+.+ +++.++. .++.++...|.+..+++ |...|.+..||++.+....
T Consensus 206 tdi~Fl~g~~~~~fat~T~~hq-vR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~-gn~~g~l~~FD~r~~kl~g 283 (412)
T KOG3881|consen 206 TDIRFLEGSPNYKFATITRYHQ-VRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYT-GNTKGQLAKFDLRGGKLLG 283 (412)
T ss_pred ccceecCCCCCceEEEEeccee-EEEecCcccCcceeEeccccCcceeeeecCCCcEEEE-ecccchhheecccCceeec
Confidence 78889887 789999999999 999999866 4566665 44777888898888665 9999999999999988777
Q ss_pred eeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeee
Q psy3710 263 LDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE 307 (424)
Q Consensus 263 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~ 307 (424)
..+++..+.|+++..+|.++++|+++-|.. +||+|+++.+++..
T Consensus 284 ~~~kg~tGsirsih~hp~~~~las~GLDRy-vRIhD~ktrkll~k 327 (412)
T KOG3881|consen 284 CGLKGITGSIRSIHCHPTHPVLASCGLDRY-VRIHDIKTRKLLHK 327 (412)
T ss_pred cccCCccCCcceEEEcCCCceEEeecccee-EEEeecccchhhhh
Confidence 778899999999999999999999999999 99999999766553
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-13 Score=111.43 Aligned_cols=190 Identities=16% Similarity=0.237 Sum_probs=131.7
Q ss_pred cCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCe-EEEeeccCCeEEEEeCCCC
Q psy3710 99 NAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSL-LAFPGRKSGHVHLVDLADP 174 (424)
Q Consensus 99 ~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~dg~i~i~d~~~~ 174 (424)
+-.++.++|++.-..++. |..|++|+-+ . .....++. .....+.+++|-|.+.. |++ |+. +-|.+|.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ks-s-t~pt~Lks-~sQrnvtclawRPlsaselav-gCr-~gIciW~~s~t 172 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKS-S-TCPTKLKS-VSQRNVTCLAWRPLSASELAV-GCR-AGICIWSDSRT 172 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccC-C-CCCceecc-hhhcceeEEEeccCCcceeee-eec-ceeEEEEcCcc
Confidence 456788999986554443 8899999965 2 33334433 23355888999886544 444 665 56889976532
Q ss_pred CCC-------------CcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe---cceeeeeecCCCC
Q psy3710 175 ERP-------------PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR---RGLCVLCPNSNNS 238 (424)
Q Consensus 175 ~~~-------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~ 238 (424)
... +..-.+| .+|++++|.+||..+++++.+...|.|||..++..+.-.. +++..+.|+|++.
T Consensus 173 ln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 173 LNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGD 251 (445)
T ss_pred cccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCC
Confidence 111 1122234 7899999999999999998765559999999887654432 3477899999999
Q ss_pred eEEEEeecCCeEEEEeCCCCC-CCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEC
Q psy3710 239 LLAFPGRKSGHVHLVDLADPE-RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDT 299 (424)
Q Consensus 239 ~~~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~ 299 (424)
.+++ ++-|+..++|...... ..... ...+.|....|+|+|++|+.++.... ++|.+
T Consensus 252 ~lfa-At~davfrlw~e~q~wt~erw~--lgsgrvqtacWspcGsfLLf~~sgsp--~lysl 308 (445)
T KOG2139|consen 252 VLFA-ATCDAVFRLWQENQSWTKERWI--LGSGRVQTACWSPCGSFLLFACSGSP--RLYSL 308 (445)
T ss_pred EEEE-ecccceeeeehhcccceeccee--ccCCceeeeeecCCCCEEEEEEcCCc--eEEEE
Confidence 9987 8899999999655432 22222 23458999999999998877666553 45544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-13 Score=124.85 Aligned_cols=231 Identities=14% Similarity=0.073 Sum_probs=155.1
Q ss_pred EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCce
Q psy3710 33 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKI 112 (424)
Q Consensus 33 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (424)
|.++|.+..... ....+...+....|+|+++.+++++... .+..|.+||+.+++......+.+.+...+|+||+.
T Consensus 184 l~~~d~dg~~~~-~lt~~~~~v~~p~wSpDG~~lay~s~~~----g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 184 LAIMDQDGANVR-YLTDGSSLVLTPRFSPNRQEITYMSYAN----GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred EEEECCCCCCcE-EEecCCCCeEeeEECCCCCEEEEEEecC----CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCC
Confidence 888887554432 2444577899999999999999987432 35799999998887654444677788999999997
Q ss_pred EEEe----ec--cEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCC--eEEEEeCCCCCCCCcccccc
Q psy3710 113 VVVL----EG--LIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSG--HVHLVDLADPERPPLDIAAH 184 (424)
Q Consensus 113 ~~~~----~~--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg--~i~i~d~~~~~~~~~~~~~~ 184 (424)
.++. ++ .|.+||+. .+. ...+..+. .......|+||++.|+++...+| .|.++|+.++ ....+..+
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~-~~~-~~~Lt~~~--~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~--~~~~lt~~ 332 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLR-SGT-TTRLTDSP--AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS--NPRRISFG 332 (435)
T ss_pred EEEEEEecCCCceEEEEECC-CCc-eEEccCCC--CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC--CeEEeecC
Confidence 6543 34 47777775 333 33343333 22445789999999988444444 5777787653 33444444
Q ss_pred cCCeEEEEEccCCCEEEEEecC---CcEEEEEECCCcceeeEEec--ceeeeeecCCCCeEEEEeecC-----CeEEEEe
Q psy3710 185 EAPLSCIALNQTGTRLATASYK---GTLIRVFDTGSGQKLNELRR--GLCVLCPNSNNSLLAFPGRKS-----GHVHLVD 254 (424)
Q Consensus 185 ~~~v~~~~~~~~~~~l~~~~~d---~~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d-----g~i~i~d 254 (424)
...+....|+|+|+.|+..+.+ .. |.+||+.++.. ..+.. ......|+|+++.++++.... ..++++|
T Consensus 333 ~~~~~~~~~SpdG~~ia~~~~~~~~~~-i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d 410 (435)
T PRK05137 333 GGRYSTPVWSPRGDLIAFTKQGGGQFS-IGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD 410 (435)
T ss_pred CCcccCeEECCCCCEEEEEEcCCCceE-EEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence 5566778999999999887643 24 88889865432 33322 245678999999998876544 3688888
Q ss_pred CCCCCCCCeeeccCCCCeEEEEEcC
Q psy3710 255 LADPERPPLDIAAHEAPLSCIALNQ 279 (424)
Q Consensus 255 ~~~~~~~~~~~~~~~~~v~~~~~~~ 279 (424)
+..... ..+. ....+...+|+|
T Consensus 411 l~g~~~--~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 411 LTGRNE--REVP-TPGDASDPAWSP 432 (435)
T ss_pred CCCCce--EEcc-CCCCccCcccCC
Confidence 876542 2332 234466777876
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-11 Score=108.38 Aligned_cols=271 Identities=13% Similarity=0.129 Sum_probs=174.6
Q ss_pred CeEEEEeC--CcCcccccc-cccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCC--cE--EEEEe-ecCCe
Q psy3710 31 DGFRIYNC--DPLKEKERQ-DFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKK--QV--VICLE-FNAPV 102 (424)
Q Consensus 31 ~~i~iw~~--~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~--~~--~~~~~-~~~~v 102 (424)
++|.+|++ ++++..... ......-..+++++++++|.++.... ..++.|..|.+... +. +.+.. .....
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~---~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p 89 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS---GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSP 89 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS---STTTEEEEEEEETTTTEEEEEEEEEESSSCE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc---cCCCCEEEEEECCCcceeEEeeeeccCCCCc
Confidence 35888887 344332211 11345567799999999999887531 02689999987654 32 23333 35566
Q ss_pred EEEEecCCceEEEe----eccEEEEeecCCCceeEEEe--e---------CCCCCeeEEEeecCCCCeEEEeeccCCeEE
Q psy3710 103 KGVRLRRDKIVVVL----EGLIKVYTFIQCPQQLHVFE--T---------NPNPKGLCVLCPNSNNSLLAFPGRKSGHVH 167 (424)
Q Consensus 103 ~~~~~~~~~~~~~~----~~~i~v~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~ 167 (424)
..++++|++.+++. +|.+.++++...+....... . ........++.++|++++++++.-....|.
T Consensus 90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~ 169 (345)
T PF10282_consen 90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVY 169 (345)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred EEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEE
Confidence 78999999976664 88999999975554433311 1 112344667899999999988555667899
Q ss_pred EEeCCCCCCCCcc---cc-cccCCeEEEEEccCCCEEEEEecCCcEEEEEECC--Ccc--eeeEEec---------ceee
Q psy3710 168 LVDLADPERPPLD---IA-AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG--SGQ--KLNELRR---------GLCV 230 (424)
Q Consensus 168 i~d~~~~~~~~~~---~~-~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~--~~~--~~~~~~~---------~~~~ 230 (424)
+|++......+.. +. ......+.++|+|++++++...+....|.++++. +++ .+..... ....
T Consensus 170 ~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
T PF10282_consen 170 VYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE 249 (345)
T ss_dssp EEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred EEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence 9999875322211 11 2345578999999999887776544339999887 332 2222221 2456
Q ss_pred eeecCCCCeEEEEeecCCeEEEEeCCCCCCCC---eeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEC--CCCce
Q psy3710 231 LCPNSNNSLLAFPGRKSGHVHLVDLADPERPP---LDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDT--GSGQK 304 (424)
Q Consensus 231 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~--~~~~~ 304 (424)
++++|++++++++....+.|.+|++......+ ..+.........++++|+|++|+++..+...|.+|++ ++|.+
T Consensus 250 i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 250 IAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp EEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence 78999999999988899999999995432112 2333344558999999999999998866544888765 45543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.8e-13 Score=121.60 Aligned_cols=213 Identities=12% Similarity=0.089 Sum_probs=140.0
Q ss_pred CCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe------eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCC
Q psy3710 79 NNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL------EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSN 152 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (424)
..+|.+||...+.......+...+.+.+|+||+..++. ...|.+|++. .++.. .+..... ...+..|+||
T Consensus 183 ~~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~-~g~~~-~l~~~~g--~~~~~~~SpD 258 (433)
T PRK04922 183 RYALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLA-TGQRE-LVASFRG--INGAPSFSPD 258 (433)
T ss_pred eEEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECC-CCCEE-EeccCCC--CccCceECCC
Confidence 35799999865444443346778999999999977664 2469999986 44432 2222221 2346789999
Q ss_pred CCeEEEeeccCC--eEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEec-CCc-EEEEEECCCcceeeE-Eecc
Q psy3710 153 NSLLAFPGRKSG--HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY-KGT-LIRVFDTGSGQKLNE-LRRG 227 (424)
Q Consensus 153 ~~~l~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~-~i~iwd~~~~~~~~~-~~~~ 227 (424)
|+.|+++.+.+| .|++||+.++ ....+..+.......+|+|||+.|+..+. ++. .|+++|+.+++.... +...
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g--~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~ 336 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSR--QLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGN 336 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCC--CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCC
Confidence 998876455555 5999999875 34455556556678899999999887764 332 166777766654332 2222
Q ss_pred -eeeeeecCCCCeEEEEeecCC--eEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCc--EEEEEECC
Q psy3710 228 -LCVLCPNSNNSLLAFPGRKSG--HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGT--LIRVFDTG 300 (424)
Q Consensus 228 -~~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--~i~iwd~~ 300 (424)
....+++|+++.++++...++ .|.+||+.+++.. .+. +........|+|||++++..+.++. .|.++++.
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~--~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR--TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE--ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 335789999999998655443 6999999776532 222 2224456789999998887776432 15555553
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-13 Score=117.68 Aligned_cols=230 Identities=16% Similarity=0.201 Sum_probs=141.5
Q ss_pred eEEEEecCCceEEEe--eccEEEEeecCCCceeEEEee-CCCCCeeEEEe-----ecCCCCeEEEeeccCCeEEEEeCCC
Q psy3710 102 VKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFET-NPNPKGLCVLC-----PNSNNSLLAFPGRKSGHVHLVDLAD 173 (424)
Q Consensus 102 v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~l~~~~~~dg~i~i~d~~~ 173 (424)
+.....+-.+..++. ...+++|+.+...+.-..+.. .......++-. -.+.+--+++ |-..|.|.+.|...
T Consensus 126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllI-Gf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLI-GFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEE-eeccCceEEecchh
Confidence 344444455555554 778999988621111111100 00001111222 2455666776 88999999998775
Q ss_pred CCCCCcccc----cccCCeEEEEEccCC-CEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCC
Q psy3710 174 PERPPLDIA----AHEAPLSCIALNQTG-TRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSG 248 (424)
Q Consensus 174 ~~~~~~~~~----~~~~~v~~~~~~~~~-~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg 248 (424)
. ...+.+. ..+..|+++.|-|.+ ..++.+-.+|. ++++|..-... .........+++..+.+
T Consensus 205 ~-~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGn-lyly~~~~~~~-----~t~p~~~~~k~~~~f~i------ 271 (636)
T KOG2394|consen 205 F-EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGN-LYLYDKEIVCG-----ATAPSYQALKDGDQFAI------ 271 (636)
T ss_pred h-HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCc-eEEeecccccc-----CCCCcccccCCCCeeEE------
Confidence 2 2111111 234789999999854 46677778898 99998721100 00111112233333332
Q ss_pred eEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceee------------eeccCCcEEE
Q psy3710 249 HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN------------ELRRDSSYLC 316 (424)
Q Consensus 249 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~------------~~~~~~~~l~ 316 (424)
..|--.....++....-..+.|...+|+|||++||+.+.||. +||||..+.+++. .|+|||++++
T Consensus 272 --~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIv 348 (636)
T KOG2394|consen 272 --LTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIV 348 (636)
T ss_pred --eeeeccccCCccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccHHHHHHHHHhhccceEEEEEcCCccEEE
Confidence 222222222344444445668999999999999999999999 9999999866543 5899999999
Q ss_pred EEeCCCcEEEEEccccccccccccc----eeeeccC
Q psy3710 317 VSSDHGTVHVFSVDEAQKINKQSSL----ASASFLP 348 (424)
Q Consensus 317 ~~~~d~~i~iw~~~~~~~~~~~~~~----~~~~~~~ 348 (424)
+|++|.-|.||.+..++.+.+-..+ ..+.|-|
T Consensus 349 tGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 349 TGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999998877765544 3445554
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.4e-11 Score=98.04 Aligned_cols=270 Identities=12% Similarity=0.146 Sum_probs=177.2
Q ss_pred CCeEEEEECCCCc----EEEEEeecCCeEEEEecCCceEEEe------eccEEEEeecCCCceeEEEeeCCCC-CeeEEE
Q psy3710 79 NNRVMIWDDLKKQ----VVICLEFNAPVKGVRLRRDKIVVVL------EGLIKVYTFIQCPQQLHVFETNPNP-KGLCVL 147 (424)
Q Consensus 79 d~~i~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~------~~~i~v~~~~~~~~~~~~~~~~~~~-~~~~~~ 147 (424)
.+.|.+|++.+.+ ........+.+.-++++|+++.+.+ .|.|..|.++.....+..+.....+ ..-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 5789999987322 2333446788999999999965554 5788888887432233322222111 223788
Q ss_pred eecCCCCeEEEeeccCCeEEEEeCCCCCCCCc--ccccccCC----------eEEEEEccCCCEEEEEecCCcEEEEEEC
Q psy3710 148 CPNSNNSLLAFPGRKSGHVHLVDLADPERPPL--DIAAHEAP----------LSCIALNQTGTRLATASYKGTLIRVFDT 215 (424)
Q Consensus 148 ~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~----------v~~~~~~~~~~~l~~~~~d~~~i~iwd~ 215 (424)
+.++++++++++....|.|.++-++....... ....|.+. +....+.|++++|++..-.-..|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999999778889999999976422222 23345554 8899999999999887532222999999
Q ss_pred CCcceeeEE----e--cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec---------cCCCCeEEEEEcCC
Q psy3710 216 GSGQKLNEL----R--RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA---------AHEAPLSCIALNQT 280 (424)
Q Consensus 216 ~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~v~~~~~~~~ 280 (424)
..++....- + .+.+-+.|+|+++...+..--+++|.+|...........++ .......+|..+||
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 977544322 2 23678999999999999899999999999987532222221 12345677888899
Q ss_pred CCEEEEEeCCCcEEEEEECCCCceeeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEE
Q psy3710 281 GTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKF 360 (424)
Q Consensus 281 ~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (424)
|++|.++..--..|.+|.+. +++..|.. +..|....
T Consensus 255 GrFLYasNRg~dsI~~f~V~---------~~~g~L~~------~~~~~teg----------------------------- 290 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVD---------PDGGKLEL------VGITPTEG----------------------------- 290 (346)
T ss_pred CCEEEEecCCCCeEEEEEEc---------CCCCEEEE------EEEeccCC-----------------------------
Confidence 98887765433214443322 22222221 11222221
Q ss_pred eecCCCceEEEEecCCCeEEEEeccC-cEEEEEecCC
Q psy3710 361 QIPSDPPCICAFGADSNSIIVICADG-SYYKFMFNSK 396 (424)
Q Consensus 361 ~~~~~~~~~~~~s~~~~~l~~~~~dg-~v~~~~~~~~ 396 (424)
...+...|++.+++|+++..++ .|.+|..++.
T Consensus 291 ----~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 291 ----QFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred ----cCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 1134678999999999988854 8999999864
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-13 Score=128.76 Aligned_cols=259 Identities=12% Similarity=0.120 Sum_probs=167.5
Q ss_pred CceeEEEeeCCCCCeeEEEeecCCC-CeEEEeeccCCeEEEEeCCCCCCC------CcccccccCCeEEEEEccCCCEEE
Q psy3710 129 PQQLHVFETNPNPKGLCVLCPNSNN-SLLAFPGRKSGHVHLVDLADPERP------PLDIAAHEAPLSCIALNQTGTRLA 201 (424)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~ 201 (424)
+..+..+..|... +..++.+++. .++++ |+.||+|++|+.+.-... ..++......+..+.+.+.+..+|
T Consensus 1038 G~lVAhL~Ehs~~--v~k~a~s~~~~s~Fvs-gS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSA--VIKLAVSSEHTSLFVS-GSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred ceEeehhhhcccc--ccceeecCCCCceEEE-ecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence 4555555555433 4466666555 77776 999999999998753221 112333467899999999999999
Q ss_pred EEecCCcEEEEEECCCcc--ee-----eEEe--c-c--eeeeeecCC-CCeEEEEeecCCeEEEEeCCCCCCCCe-eecc
Q psy3710 202 TASYKGTLIRVFDTGSGQ--KL-----NELR--R-G--LCVLCPNSN-NSLLAFPGRKSGHVHLVDLADPERPPL-DIAA 267 (424)
Q Consensus 202 ~~~~d~~~i~iwd~~~~~--~~-----~~~~--~-~--~~~~~~~~~-~~~~~~~~~~dg~i~i~d~~~~~~~~~-~~~~ 267 (424)
.++.||. |++.++.... .. +... . + +...++... ...+++.+...+.|..||++....... ....
T Consensus 1115 v~t~DG~-v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1115 VSTKDGS-VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEcCCCe-EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 9999999 9999987621 11 1111 1 1 222233222 233566689999999999998653222 2234
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec----------------cCCcEEEEEe--CCCcEEEEEc
Q psy3710 268 HEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR----------------RDSSYLCVSS--DHGTVHVFSV 329 (424)
Q Consensus 268 ~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~----------------~~~~~l~~~~--~d~~i~iw~~ 329 (424)
..+.|++++.+|.+.++++|...|. +.+||++=+.++.++. +.....++++ ..+.|.+|++
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~-l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQ-LVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCce-EEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 5678999999999999999999999 9999999888777654 3334555544 4678999999
Q ss_pred cccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecC
Q psy3710 330 DEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~ 395 (424)
.+|.+-.....-.....+....... + .-+.+.-....+++..-+..+++|+.|..|+.||...
T Consensus 1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~-~--~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSN-D--ARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred ccCcceEEEEcCCCCcchhhhcccc-c--CCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 9985533221110110000000000 0 0001222344556666677999999999999999874
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.1e-13 Score=114.76 Aligned_cols=265 Identities=14% Similarity=0.162 Sum_probs=183.3
Q ss_pred cCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeE-EEEecCCc-eEEE--eeccEEEEee
Q psy3710 50 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVK-GVRLRRDK-IVVV--LEGLIKVYTF 125 (424)
Q Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~-~~~~--~~~~i~v~~~ 125 (424)
+....+.|..+|||.|+..+|-. .-.|++||+..-.....-.....+. -.-++.|- ..+. .|..|.+...
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~Y------KP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTY------KPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred CccccceeEecCCCcEEEEeccc------CCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 45667789999999999888754 5799999987655443333344444 34445443 2222 2777766543
Q ss_pred cCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEec
Q psy3710 126 IQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY 205 (424)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 205 (424)
. + ....++.+ .....++++.-..-|++ ++....|+-++++.+ ..+..+....+.++++..++...+|++|+.
T Consensus 124 ~--G-~hy~~RIP---~~GRDm~y~~~scDly~-~gsg~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 124 Y--G-RHYRTRIP---KFGRDMKYHKPSCDLYL-VGSGSEVYRLNLEQG-RFLNPFETDSGELNVVSINEEHGLLACGTE 195 (703)
T ss_pred c--C-eeeeeecC---cCCccccccCCCccEEE-eecCcceEEEEcccc-ccccccccccccceeeeecCccceEEeccc
Confidence 1 1 22222222 11233454444444555 666678888899987 777777777899999999999899999999
Q ss_pred CCcEEEEEECCCcceeeEEecc--------------eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCC
Q psy3710 206 KGTLIRVFDTGSGQKLNELRRG--------------LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAP 271 (424)
Q Consensus 206 d~~~i~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 271 (424)
+|. |..||.++...+..+... ++++.|..+|-.+++ |+.+|.+.|||++..+.....-.+..-+
T Consensus 196 ~g~-VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aV-Gts~G~v~iyDLRa~~pl~~kdh~~e~p 273 (703)
T KOG2321|consen 196 DGV-VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAV-GTSTGSVLIYDLRASKPLLVKDHGYELP 273 (703)
T ss_pred Cce-EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEe-eccCCcEEEEEcccCCceeecccCCccc
Confidence 999 999999988776665422 556777777666665 9999999999999987655554455678
Q ss_pred eEEEEEcCCC--CEEEEEeCCCcEEEEEECCCCceeeeec-----------cCCcEEEEEeCCCcEEEEEcccc
Q psy3710 272 LSCIALNQTG--TRLATASYKGTLIRVFDTGSGQKLNELR-----------RDSSYLCVSSDHGTVHVFSVDEA 332 (424)
Q Consensus 272 v~~~~~~~~~--~~l~~~~~d~~~i~iwd~~~~~~~~~~~-----------~~~~~l~~~~~d~~i~iw~~~~~ 332 (424)
|..+.|.+.+ +.+++.. ... ++|||-.+|+....+. |++.+++++-.++.+..|=+..-
T Consensus 274 i~~l~~~~~~~q~~v~S~D-k~~-~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 274 IKKLDWQDTDQQNKVVSMD-KRI-LKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred eeeecccccCCCceEEecc-hHH-hhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 9999998753 3444433 233 9999999999887654 56778888888877777766553
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-11 Score=109.31 Aligned_cols=264 Identities=18% Similarity=0.232 Sum_probs=168.6
Q ss_pred ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeec---cCCeEEEEeCCCCCCCCc---ccccccCCeEEE
Q psy3710 118 GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGR---KSGHVHLVDLADPERPPL---DIAAHEAPLSCI 191 (424)
Q Consensus 118 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~dg~i~i~d~~~~~~~~~---~~~~~~~~v~~~ 191 (424)
+.|.+|+++.....+..............++++|++++|.++.. .+|.|..|++......+. ...........+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 67888888434333333222111122345678999999988433 368999999886411121 222234456789
Q ss_pred EEccCCCEEEEEec-CCcEEEEEECCC-cceeeE---Ee-------------cceeeeeecCCCCeEEEEeecCCeEEEE
Q psy3710 192 ALNQTGTRLATASY-KGTLIRVFDTGS-GQKLNE---LR-------------RGLCVLCPNSNNSLLAFPGRKSGHVHLV 253 (424)
Q Consensus 192 ~~~~~~~~l~~~~~-d~~~i~iwd~~~-~~~~~~---~~-------------~~~~~~~~~~~~~~~~~~~~~dg~i~i~ 253 (424)
+++|++++|+++.. ++. |.++++.. +..... +. .+...+.++|+++.++++.-....|++|
T Consensus 93 ~~~~~g~~l~vany~~g~-v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGS-VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp EECTTSSEEEEEETTTTE-EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred EEecCCCEEEEEEccCCe-EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence 99999999998875 666 99999986 332221 11 2255788999999999987778899999
Q ss_pred eCCCCCCCCe---ee-ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC--CCce--ee------------------e
Q psy3710 254 DLADPERPPL---DI-AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG--SGQK--LN------------------E 307 (424)
Q Consensus 254 d~~~~~~~~~---~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~--~~~~--~~------------------~ 307 (424)
++......+. .+ .........++|+|++++++...+....|.++++. +++. +. .
T Consensus 172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA 251 (345)
T ss_dssp EE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred EEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE
Confidence 9987653221 11 24456789999999999988777654448998887 4322 11 2
Q ss_pred eccCCcEEEEEe-CCCcEEEEEccc-cccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEec-
Q psy3710 308 LRRDSSYLCVSS-DHGTVHVFSVDE-AQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICA- 384 (424)
Q Consensus 308 ~~~~~~~l~~~~-~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~- 384 (424)
++|||++|.++. .++.|.+|+++. ...+..... +.......+.++++|+|++|+++..
T Consensus 252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~-------------------~~~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 252 ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT-------------------VPTGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE-------------------EEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE-------------------EeCCCCCccEEEEeCCCCEEEEEecC
Confidence 568999887765 467899999943 222221111 1122333578999999999998875
Q ss_pred cCcEEEEEecC-Ccceee
Q psy3710 385 DGSYYKFMFNS-KGECWR 401 (424)
Q Consensus 385 dg~v~~~~~~~-~~~~~~ 401 (424)
++.|.+|+++. +|.+..
T Consensus 313 s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 313 SNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp TTEEEEEEEETTTTEEEE
T ss_pred CCeEEEEEEeCCCCcEEE
Confidence 67999999974 455444
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.3e-12 Score=107.74 Aligned_cols=322 Identities=14% Similarity=0.134 Sum_probs=207.8
Q ss_pred eeEeecCCeEEEEeCCcCcc-cccccc--cCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecC
Q psy3710 24 CFACGMEDGFRIYNCDPLKE-KERQDF--TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNA 100 (424)
Q Consensus 24 ~la~g~~~~i~iw~~~~~~~-~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 100 (424)
.+++-+..++.+|+..+... ...... ........+++++|.+++... +..++|++..++..+.+....
T Consensus 4 ~~aVRsSe~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~--------~~~v~i~~~~~~~~~lt~~~~- 74 (566)
T KOG2315|consen 4 VYAVRSSEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD--------NQVVKVFEIATLKVVLCVELK- 74 (566)
T ss_pred eEEEEccceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc--------CCeEEEEEccCCcEEEEeccc-
Confidence 45666777799999765433 222222 133455678888888888887 679999999888766555555
Q ss_pred CeEEEEecCCceEEEe--------e-----ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEE
Q psy3710 101 PVKGVRLRRDKIVVVL--------E-----GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVH 167 (424)
Q Consensus 101 ~v~~~~~~~~~~~~~~--------~-----~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~ 167 (424)
.+.++.|+|-+.++.+ + -.+.+|+.+ +......+...... -.+..|+.|..+.+ =-..+.+.
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve-t~~~~s~~q~k~Q~--~W~~qfs~dEsl~a--rlv~nev~ 149 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE-TGVQRSQIQKKMQN--GWVPQFSIDESLAA--RLVSNEVQ 149 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeec-cceehhheehhhhc--Ccccccccchhhhh--hhhcceEE
Confidence 8999999999988875 2 357799987 44444444433322 24667777766544 34567899
Q ss_pred EEeCCCCCCCCcccccccCCeEEEEEccCCC--EEEE-----EecCCcEEEEEECCCcceee------EEecceeeeeec
Q psy3710 168 LVDLADPERPPLDIAAHEAPLSCIALNQTGT--RLAT-----ASYKGTLIRVFDTGSGQKLN------ELRRGLCVLCPN 234 (424)
Q Consensus 168 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~-----~~~d~~~i~iwd~~~~~~~~------~~~~~~~~~~~~ 234 (424)
+|++.+.+.. .-.-|...|..+.++|.+. .+++ .+.-.. ++||...-..... -|+.....+.|.
T Consensus 150 f~~~~~f~~~--~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~-vri~~~~~~~~~~~~a~ksFFkadkvqm~WN 226 (566)
T KOG2315|consen 150 FYDLGSFKTI--QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPAS-VRIYKYPEEGQHQPVANKSFFKADKVQMKWN 226 (566)
T ss_pred EEecCCccce--eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcE-EEEeccccccccchhhhccccccceeEEEec
Confidence 9999874222 2234678899999998632 3332 344455 9999886322111 123345566777
Q ss_pred CCCCeEEEEee-----------cCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEECCC
Q psy3710 235 SNNSLLAFPGR-----------KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS--YKGTLIRVFDTGS 301 (424)
Q Consensus 235 ~~~~~~~~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~~i~iwd~~~ 301 (424)
+.+.-+++..+ .+.+++++++..... ..--...++|.++.|+|+++-++.+- .-.. +.|+|++
T Consensus 227 ~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~--~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAk-vtifnlr- 302 (566)
T KOG2315|consen 227 KLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV--SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAK-VTIFNLR- 302 (566)
T ss_pred cCCceEEEEEEEeecCCCccccccceEEEEEecCceE--EEecCCCCCceEEEECCCCCEEEEEEecccce-EEEEcCC-
Confidence 77766555333 234788888873221 11124578999999999998765432 2233 4444433
Q ss_pred CceeeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEE
Q psy3710 302 GQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIV 381 (424)
Q Consensus 302 ~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 381 (424)
.--++|+. .++-..+-|+|.|++|+.
T Consensus 303 ---------------------~~~v~df~---------------------------------egpRN~~~fnp~g~ii~l 328 (566)
T KOG2315|consen 303 ---------------------GKPVFDFP---------------------------------EGPRNTAFFNPHGNIILL 328 (566)
T ss_pred ---------------------CCEeEeCC---------------------------------CCCccceEECCCCCEEEE
Confidence 01133333 345568899999999998
Q ss_pred Eec---cCcEEEEEecCCcceee---eeehhhheecCCCceeeEEE
Q psy3710 382 ICA---DGSYYKFMFNSKGECWR---DVYIQFLEMTNDSNLLSCIE 421 (424)
Q Consensus 382 ~~~---dg~v~~~~~~~~~~~~~---~~~~~~~~~~~d~~~l~~~~ 421 (424)
++- .|.+.+||+.. .+++. .......+|+|||++|.++-
T Consensus 329 AGFGNL~G~mEvwDv~n-~K~i~~~~a~~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 329 AGFGNLPGDMEVWDVPN-RKLIAKFKAANTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred eecCCCCCceEEEeccc-hhhccccccCCceEEEEcCCCcEEEEEe
Confidence 877 57999999984 44443 33446788999999998874
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-11 Score=104.87 Aligned_cols=261 Identities=14% Similarity=0.135 Sum_probs=168.5
Q ss_pred eEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcC---CCcCCCeEEEEECCCCcEEEEEeecCCeE-----
Q psy3710 32 GFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTH---PKYPNNRVMIWDDLKKQVVICLEFNAPVK----- 103 (424)
Q Consensus 32 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~---~~~~d~~i~iwd~~~~~~~~~~~~~~~v~----- 103 (424)
.|.+.|.++.+.+.....-..+- .+ ++|+++.++++..... ..-.+..|.+||..+.+.+.++..+....
T Consensus 28 ~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~ 105 (352)
T TIGR02658 28 QVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT 105 (352)
T ss_pred eEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence 49999999888755444322222 24 9999999988875000 00026899999999999999998644433
Q ss_pred ---EEEecCCceEEEe-----eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCC
Q psy3710 104 ---GVRLRRDKIVVVL-----EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE 175 (424)
Q Consensus 104 ---~~~~~~~~~~~~~-----~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~ 175 (424)
.++++||++.+.. +..|.+.|+. ..+.+..+.... . . .+-..++..+++ -+.||......+....
T Consensus 106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~-~~kvv~ei~vp~-~--~-~vy~t~e~~~~~--~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLE-GKAFVRMMDVPD-C--Y-HIFPTANDTFFM--HCRDGSLAKVGYGTKG 178 (352)
T ss_pred ccceEEECCCCCEEEEecCCCCCEEEEEECC-CCcEEEEEeCCC-C--c-EEEEecCCccEE--EeecCceEEEEecCCC
Confidence 8999999976663 6899999996 788887777633 1 1 122222333333 2345555544443321
Q ss_pred CCCc----cccc-----ccCCeEEEEEcc-CCCEEEEEecCCcEEEEEECCCc-----ceeeEEe----------cceee
Q psy3710 176 RPPL----DIAA-----HEAPLSCIALNQ-TGTRLATASYKGTLIRVFDTGSG-----QKLNELR----------RGLCV 230 (424)
Q Consensus 176 ~~~~----~~~~-----~~~~v~~~~~~~-~~~~l~~~~~d~~~i~iwd~~~~-----~~~~~~~----------~~~~~ 230 (424)
+... .+.. ...+ .|.+ +|+++..... |. |.+.|+... +....+. .+...
T Consensus 179 ~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~-V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ 252 (352)
T TIGR02658 179 NPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GK-IFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ 252 (352)
T ss_pred ceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-Ce-EEEEecCCCcceecceeeeccccccccccCCCccee
Confidence 2110 0111 0112 3455 7777776666 88 999996443 2222221 12345
Q ss_pred eeecCCCCeEEEEe---------ecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCC-EEEEEe-CCCcEEEEEEC
Q psy3710 231 LCPNSNNSLLAFPG---------RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT-RLATAS-YKGTLIRVFDT 299 (424)
Q Consensus 231 ~~~~~~~~~~~~~~---------~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~d~~~i~iwd~ 299 (424)
++++++++.+++.. ...+.|.++|..+.+...... -...+..++++||++ +|++.. .++. |.++|.
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~--vG~~~~~iavS~Dgkp~lyvtn~~s~~-VsViD~ 329 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE--LGHEIDSINVSQDAKPLLYALSTGDKT-LYIFDA 329 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe--CCCceeeEEECCCCCeEEEEeCCCCCc-EEEEEC
Confidence 89999999998843 223589999998877433332 245789999999999 887776 4677 999999
Q ss_pred CCCceeeeecc
Q psy3710 300 GSGQKLNELRR 310 (424)
Q Consensus 300 ~~~~~~~~~~~ 310 (424)
.+++.+.++.+
T Consensus 330 ~t~k~i~~i~~ 340 (352)
T TIGR02658 330 ETGKELSSVNQ 340 (352)
T ss_pred cCCeEEeeecc
Confidence 99999988744
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-12 Score=118.21 Aligned_cols=234 Identities=14% Similarity=0.067 Sum_probs=146.2
Q ss_pred EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCce
Q psy3710 33 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKI 112 (424)
Q Consensus 33 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (424)
+.++|.+...... .......+....|+|+++.++.++... ....|.+||+.+++........+......|+||+.
T Consensus 200 l~i~d~dG~~~~~-l~~~~~~~~~p~wSPDG~~La~~s~~~----g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~ 274 (448)
T PRK04792 200 LMIADYDGYNEQM-LLRSPEPLMSPAWSPDGRKLAYVSFEN----RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGK 274 (448)
T ss_pred EEEEeCCCCCceE-eecCCCcccCceECCCCCEEEEEEecC----CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCC
Confidence 6667765544322 233356788899999999999887431 13479999998887644333444556789999997
Q ss_pred EEEe----ecc--EEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCe--EEEEeCCCCCCCCcccccc
Q psy3710 113 VVVL----EGL--IKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGH--VHLVDLADPERPPLDIAAH 184 (424)
Q Consensus 113 ~~~~----~~~--i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~--i~i~d~~~~~~~~~~~~~~ 184 (424)
.++. ++. |.++|+. +++ ...+..+. .......|+||++.|++++..++. |.++|+.++ + ...+...
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~-tg~-~~~lt~~~--~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g-~-~~~Lt~~ 348 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIA-TKA-LTRITRHR--AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG-K-VSRLTFE 348 (448)
T ss_pred EEEEEEeCCCCeEEEEEECC-CCC-eEECccCC--CCccceEECCCCCEEEEEECCCCCceEEEEECCCC-C-EEEEecC
Confidence 6653 454 6777774 333 33333332 224457899999999885555554 555666654 2 2222222
Q ss_pred cCCeEEEEEccCCCEEEEEecC-Cc-EEEEEECCCcceeeEEecc-eeeeeecCCCCeEEEEeecCCe--EEEEeCCCCC
Q psy3710 185 EAPLSCIALNQTGTRLATASYK-GT-LIRVFDTGSGQKLNELRRG-LCVLCPNSNNSLLAFPGRKSGH--VHLVDLADPE 259 (424)
Q Consensus 185 ~~~v~~~~~~~~~~~l~~~~~d-~~-~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~dg~--i~i~d~~~~~ 259 (424)
.......+|+|||++|+..+.+ +. .|.++|+.+++........ .....++|++..++++...++. +++++....
T Consensus 349 g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~- 427 (448)
T PRK04792 349 GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR- 427 (448)
T ss_pred CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-
Confidence 2233457899999998877653 32 1566788777543222111 2234799999999997777664 666776432
Q ss_pred CCCeeeccCCCCeEEEEEcC
Q psy3710 260 RPPLDIAAHEAPLSCIALNQ 279 (424)
Q Consensus 260 ~~~~~~~~~~~~v~~~~~~~ 279 (424)
....+..+.+.+...+|+|
T Consensus 428 -~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 428 -FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred -ceEECcCCCCCcCCCccCC
Confidence 2344445566677888887
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.6e-11 Score=97.93 Aligned_cols=268 Identities=13% Similarity=0.079 Sum_probs=180.0
Q ss_pred ccccccCCceEEEEECCCCCeeEeecCC---e-EEEEeCCc--Ccc--cccccccCCCeeeEEEeccCceEEEEeCCcCC
Q psy3710 4 GTSSTYKNGLLYAGFNQDQGCFACGMED---G-FRIYNCDP--LKE--KERQDFTDGGLGHVEMLFRCNYLALVGGGTHP 75 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~g~~la~g~~~---~-i~iw~~~~--~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 75 (424)
..+-.+.+..+-++|+|++++|.++... + |.-|.++. ++. +........+-+.+++++++.+++++...
T Consensus 33 ~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~--- 109 (346)
T COG2706 33 LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH--- 109 (346)
T ss_pred hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc---
Confidence 3455677888999999999999876544 3 87777775 443 22223333444889999999999999864
Q ss_pred CcCCCeEEEEECCC-CcE---EEEEeecCC----------eEEEEecCCceEEEe----eccEEEEeecCCCceeEEEee
Q psy3710 76 KYPNNRVMIWDDLK-KQV---VICLEFNAP----------VKGVRLRRDKIVVVL----EGLIKVYTFIQCPQQLHVFET 137 (424)
Q Consensus 76 ~~~d~~i~iwd~~~-~~~---~~~~~~~~~----------v~~~~~~~~~~~~~~----~~~i~v~~~~~~~~~~~~~~~ 137 (424)
-+.|.++-++. |.. +..+.|.+. +....+.|++.+++. -..|.+|++. .+++...-..
T Consensus 110 ---~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~-dg~L~~~~~~ 185 (346)
T COG2706 110 ---SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLD-DGKLTPADPA 185 (346)
T ss_pred ---CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcc-cCcccccccc
Confidence 59999998865 433 344456555 888999999987776 4589999997 4443221111
Q ss_pred C-CCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccc---------cCCeEEEEEccCCCEEEEEecCC
Q psy3710 138 N-PNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAH---------EAPLSCIALNQTGTRLATASYKG 207 (424)
Q Consensus 138 ~-~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~d~ 207 (424)
. ....+-..+.|+|++++..+..--+++|.+|..+........++.+ ......|..++||++|+++....
T Consensus 186 ~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~ 265 (346)
T COG2706 186 EVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH 265 (346)
T ss_pred ccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC
Confidence 1 2223456789999999988867889999999998742333332221 34567899999999999886544
Q ss_pred cEEEEEECCCcceeeEEe------cc-eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeee--ccCCCCeEEEEEc
Q psy3710 208 TLIRVFDTGSGQKLNELR------RG-LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDI--AAHEAPLSCIALN 278 (424)
Q Consensus 208 ~~i~iwd~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~ 278 (424)
..|.++.+....-...+. +. .+.+.+++.+..+++++-.+..|.+|......-.+..+ ........|+.|.
T Consensus 266 dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 266 DSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 337888765432211111 11 46688999999999988888899999887544222221 1233445566553
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-11 Score=104.59 Aligned_cols=324 Identities=9% Similarity=0.065 Sum_probs=208.1
Q ss_pred EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCce
Q psy3710 33 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKI 112 (424)
Q Consensus 33 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (424)
...|+...........-..-.-+.+.|+|.|.||++.- ..-|.+|--++-..++.+.|+ .|.-+.|||+..
T Consensus 192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~H--------k~GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~Ek 262 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFH--------KQGIALWGGESFDRIQRFYHP-GVQFIDFSPNEK 262 (698)
T ss_pred EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEe--------ccceeeecCccHHHHHhccCC-CceeeecCCccc
Confidence 45676443322211122233456799999999999987 468999987766666666665 488899999999
Q ss_pred EEEe--------------eccEEEEeecCCCceeEEEeeCCCCCee-EEEeecCCCCeEEEeeccCCeEEEEeCCCCCCC
Q psy3710 113 VVVL--------------EGLIKVYTFIQCPQQLHVFETNPNPKGL-CVLCPNSNNSLLAFPGRKSGHVHLVDLADPERP 177 (424)
Q Consensus 113 ~~~~--------------~~~i~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~ 177 (424)
++++ ...+.|||+. ++...+.+.....+... .-+.||.|++++|- -....|.||+..+. .+
T Consensus 263 YLVT~s~~p~~~~~~d~e~~~l~IWDI~-tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Ar--m~~~sisIyEtpsf-~l 338 (698)
T KOG2314|consen 263 YLVTYSPEPIIVEEDDNEGQQLIIWDIA-TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFAR--MTGNSISIYETPSF-ML 338 (698)
T ss_pred eEEEecCCccccCcccCCCceEEEEEcc-ccchhcceeccCCCccccceEEeccCCceeEE--eccceEEEEecCce-ee
Confidence 8886 1579999997 88888877764333222 35789999999986 23368999987753 22
Q ss_pred CcccccccCCeEEEEEccCCCEEEEEecC-----CcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEE------
Q psy3710 178 PLDIAAHEAPLSCIALNQTGTRLATASYK-----GTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFP------ 243 (424)
Q Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~------ 243 (424)
+..-.-.-..|....|+|.+..||.=... .. +.+..+.+++.+++.... -+.+.|..+|.++++-
T Consensus 339 ld~Kslki~gIr~FswsP~~~llAYwtpe~~~~par-vtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK 417 (698)
T KOG2314|consen 339 LDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPAR-VTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTK 417 (698)
T ss_pred ecccccCCccccCcccCCCcceEEEEcccccCCcce-EEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecc
Confidence 21111224568889999998877753321 23 667777776666554322 2335566677777662
Q ss_pred ---eecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeeccCCcEEEEEeC
Q psy3710 244 ---GRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYLCVSSD 320 (424)
Q Consensus 244 ---~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~l~~~~~ 320 (424)
++.-..+.|+.++....++..+ .-...|...+|-|.|+.+++-+.+..
T Consensus 418 ~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~---------------------------- 468 (698)
T KOG2314|consen 418 SKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTV---------------------------- 468 (698)
T ss_pred ccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEcccc----------------------------
Confidence 2223356788887766655544 45678889999999988877655431
Q ss_pred CCcEEEEEccc-cccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEE---eccCcEEEEEecCC
Q psy3710 321 HGTVHVFSVDE-AQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVI---CADGSYYKFMFNSK 396 (424)
Q Consensus 321 d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~---~~dg~v~~~~~~~~ 396 (424)
..++.+|.+++ ........ +.+....+.+.|+|.|++++++ |..|.+.++|++-
T Consensus 469 k~tvsfY~~e~~~~~~~lVk---------------------~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~- 526 (698)
T KOG2314|consen 469 KNTVSFYAVETNIKKPSLVK---------------------ELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY- 526 (698)
T ss_pred ccceeEEEeecCCCchhhhh---------------------hhcccccceEEEcCCCcEEEEEEecccccceEEEecch-
Confidence 23456666653 11111000 0111234578999999999875 4578999999872
Q ss_pred cceeeee-----ehhhheecCCCceeeEEE
Q psy3710 397 GECWRDV-----YIQFLEMTNDSNLLSCIE 421 (424)
Q Consensus 397 ~~~~~~~-----~~~~~~~~~d~~~l~~~~ 421 (424)
.++.+.. ...-+++-|.|+|+.+..
T Consensus 527 a~~k~~~~~eh~~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 527 ADLKDTASPEHFAATEVEWDPTGRYVVTSS 556 (698)
T ss_pred hhhhhccCccccccccceECCCCCEEEEee
Confidence 3333322 234567899999988763
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.9e-11 Score=107.64 Aligned_cols=283 Identities=16% Similarity=0.165 Sum_probs=173.9
Q ss_pred cCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeE-EEEecCCceEEEe-eccEEEEeecCCCceeEEEeeCC
Q psy3710 62 RCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVK-GVRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFETNP 139 (424)
Q Consensus 62 ~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~ 139 (424)
.++.+++.+ .++.+..+|..+|+.+........+. .+....+..++.. ++.+..+|.. +++.+.......
T Consensus 64 ~~~~v~v~~-------~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~-tG~~~W~~~~~~ 135 (377)
T TIGR03300 64 AGGKVYAAD-------ADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAE-DGKELWRAKLSS 135 (377)
T ss_pred ECCEEEEEC-------CCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECC-CCcEeeeeccCc
Confidence 355666555 36899999999999998887544433 3333333344444 8899999986 677766554332
Q ss_pred CCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCe-----EEEEEccCCCEEEEEecCCcEEEEEE
Q psy3710 140 NPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPL-----SCIALNQTGTRLATASYKGTLIRVFD 214 (424)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~d~~~i~iwd 214 (424)
.. ...... .+..+++ +..+|.+..||.+++ +.+.......... .+.... +..++.+..++. +..+|
T Consensus 136 ~~--~~~p~v--~~~~v~v-~~~~g~l~a~d~~tG-~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~-v~ald 206 (377)
T TIGR03300 136 EV--LSPPLV--ANGLVVV-RTNDGRLTALDAATG-ERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGK-LVALD 206 (377)
T ss_pred ee--ecCCEE--ECCEEEE-ECCCCeEEEEEcCCC-ceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCE-EEEEE
Confidence 11 111111 2445665 788999999999886 4433332221111 111111 246778888888 99999
Q ss_pred CCCcceeeEEeccee----------eeeecC--CCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCC
Q psy3710 215 TGSGQKLNELRRGLC----------VLCPNS--NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT 282 (424)
Q Consensus 215 ~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 282 (424)
.++++.+.+...... .....| .+.. ++.++.+|.++.+|..+++..-.. . .. ...... .++.
T Consensus 207 ~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~-vy~~~~~g~l~a~d~~tG~~~W~~-~-~~-~~~~p~--~~~~ 280 (377)
T TIGR03300 207 LQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQ-VYAVSYQGRVAALDLRSGRVLWKR-D-AS-SYQGPA--VDDN 280 (377)
T ss_pred ccCCCEeeeeccccCCCCCchhhhhccCCccEEECCE-EEEEEcCCEEEEEECCCCcEEEee-c-cC-CccCce--EeCC
Confidence 999987655432100 001111 2334 444778999999999887632211 1 11 111222 2456
Q ss_pred EEEEEeCCCcEEEEEECCCCceeeeecc-----------CCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccc
Q psy3710 283 RLATASYKGTLIRVFDTGSGQKLNELRR-----------DSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYF 351 (424)
Q Consensus 283 ~l~~~~~d~~~i~iwd~~~~~~~~~~~~-----------~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 351 (424)
.++.++.+|. +..+|..+|+.+.+... .+..+++++.+|.|+++|..+|+.+.+.+.
T Consensus 281 ~vyv~~~~G~-l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~----------- 348 (377)
T TIGR03300 281 RLYVTDADGV-VVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKT----------- 348 (377)
T ss_pred EEEEECCCCe-EEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEc-----------
Confidence 8888889999 99999999988876521 456788899999999999999887544322
Q ss_pred cCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEE
Q psy3710 352 SSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKF 391 (424)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~ 391 (424)
+.+.+...-...+ +.|++++.||.|+.|
T Consensus 349 -----------~~~~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 349 -----------DGSGIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred -----------CCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence 1111111111123 468899999999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.4e-11 Score=108.03 Aligned_cols=286 Identities=16% Similarity=0.177 Sum_probs=174.2
Q ss_pred CCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecC
Q psy3710 22 QGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNA 100 (424)
Q Consensus 22 g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 100 (424)
+..+.+++.++ +.-+|..+++.+............ ...+++.+++.+ .++.+..+|.++|+.+.+.....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~--p~v~~~~v~v~~-------~~g~l~ald~~tG~~~W~~~~~~ 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGG--VGADGGLVFVGT-------EKGEVIALDAEDGKELWRAKLSS 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccc--eEEcCCEEEEEc-------CCCEEEEEECCCCcEeeeeccCc
Confidence 45677777666 999999999886655543321111 223455555554 47999999999999998877555
Q ss_pred CeEEEEecCCceEEE-e-eccEEEEeecCCCceeEEEeeCCCCCee---EEEeecCCCCeEEEeeccCCeEEEEeCCCCC
Q psy3710 101 PVKGVRLRRDKIVVV-L-EGLIKVYTFIQCPQQLHVFETNPNPKGL---CVLCPNSNNSLLAFPGRKSGHVHLVDLADPE 175 (424)
Q Consensus 101 ~v~~~~~~~~~~~~~-~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~ 175 (424)
.+.+.....++.+++ . ++.+..||.+ +++.+..++........ ..... .+..+++ +..+|.+..+|.+++
T Consensus 136 ~~~~~p~v~~~~v~v~~~~g~l~a~d~~-tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~-~~~~g~v~ald~~tG- 210 (377)
T TIGR03300 136 EVLSPPLVANGLVVVRTNDGRLTALDAA-TGERLWTYSRVTPALTLRGSASPVI--ADGGVLV-GFAGGKLVALDLQTG- 210 (377)
T ss_pred eeecCCEEECCEEEEECCCCeEEEEEcC-CCceeeEEccCCCceeecCCCCCEE--ECCEEEE-ECCCCEEEEEEccCC-
Confidence 444322222344444 3 8899999986 77776665543321100 01111 1235555 888899999999876
Q ss_pred CCCcccccc-c---CC---eEEEEEcc--CCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeec
Q psy3710 176 RPPLDIAAH-E---AP---LSCIALNQ--TGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRK 246 (424)
Q Consensus 176 ~~~~~~~~~-~---~~---v~~~~~~~--~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (424)
+........ . .. ...+.-+| .+..++.++.++. ++.+|..+++.+...+... .......+..+++ ++.
T Consensus 211 ~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~-l~a~d~~tG~~~W~~~~~~-~~~p~~~~~~vyv-~~~ 287 (377)
T TIGR03300 211 QPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGR-VAALDLRSGRVLWKRDASS-YQGPAVDDNRLYV-TDA 287 (377)
T ss_pred CEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCE-EEEEECCCCcEEEeeccCC-ccCceEeCCEEEE-ECC
Confidence 332221100 0 00 00010011 2457888888999 9999999998876665321 1112223455554 778
Q ss_pred CCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeecc-----------CCcEE
Q psy3710 247 SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR-----------DSSYL 315 (424)
Q Consensus 247 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-----------~~~~l 315 (424)
+|.++.+|..+++.....-........+... .+..+++++.+|. +.++|..+|+.+.+++. .+..|
T Consensus 288 ~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~-l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l 364 (377)
T TIGR03300 288 DGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY-LHWLSREDGSFVARLKTDGSGIASPPVVVGDGL 364 (377)
T ss_pred CCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE-EEEEECCCCCEEEEEEcCCCccccCCEEECCEE
Confidence 9999999998876322210111111222222 4568999999999 99999999999987752 23457
Q ss_pred EEEeCCCcEEEE
Q psy3710 316 CVSSDHGTVHVF 327 (424)
Q Consensus 316 ~~~~~d~~i~iw 327 (424)
+.++.||.|+.|
T Consensus 365 ~v~~~dG~l~~~ 376 (377)
T TIGR03300 365 LVQTRDGDLYAF 376 (377)
T ss_pred EEEeCCceEEEe
Confidence 788888888765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.7e-12 Score=115.54 Aligned_cols=234 Identities=12% Similarity=0.042 Sum_probs=149.0
Q ss_pred EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCce
Q psy3710 33 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKI 112 (424)
Q Consensus 33 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (424)
|.++|.+...... ...+...+....|+|+++.+++++... ....|.+||+.+++........+.+....|+||+.
T Consensus 181 l~~~d~~g~~~~~-l~~~~~~~~~p~wSpDG~~la~~s~~~----~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 181 LQRSDYDGARAVT-LLQSREPILSPRWSPDGKRIAYVSFEQ----KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGS 255 (430)
T ss_pred EEEECCCCCCceE-EecCCCceeeeeECCCCCEEEEEEcCC----CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCC
Confidence 7777776544322 333456788899999999999887432 23579999998887655433455566799999997
Q ss_pred EEEe----ec--cEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCC--eEEEEeCCCCCCCCcccccc
Q psy3710 113 VVVL----EG--LIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSG--HVHLVDLADPERPPLDIAAH 184 (424)
Q Consensus 113 ~~~~----~~--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg--~i~i~d~~~~~~~~~~~~~~ 184 (424)
.++. ++ .|+++|+. +++. ..+..+. .......|+||++.|+++...+| .|.++++.++. ...+...
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~-~~~~-~~lt~~~--~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~--~~~lt~~ 329 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLA-SRQL-SRVTNHP--AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR--AERVTFV 329 (430)
T ss_pred EEEEEEccCCCceEEEEECC-CCCe-EEcccCC--CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEeecC
Confidence 6653 33 68888885 4333 3333322 22345689999999887454444 46667776642 2222211
Q ss_pred cCCeEEEEEccCCCEEEEEecCC---cEEEEEECCCcceeeEEec-ceeeeeecCCCCeEEEEeecCC--eEEEEeCCCC
Q psy3710 185 EAPLSCIALNQTGTRLATASYKG---TLIRVFDTGSGQKLNELRR-GLCVLCPNSNNSLLAFPGRKSG--HVHLVDLADP 258 (424)
Q Consensus 185 ~~~v~~~~~~~~~~~l~~~~~d~---~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~ 258 (424)
........|+|+|+.++..+.++ . |.++|+.+++....... ......++|++..++++...++ .++++++...
T Consensus 330 ~~~~~~~~~Spdg~~i~~~~~~~~~~~-l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 330 GNYNARPRLSADGKTLVMVHRQDGNFH-VAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred CCCccceEECCCCCEEEEEEccCCceE-EEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 22334678999999998776432 4 78899988754322221 1234589999999999776655 4666666433
Q ss_pred CCCCeeeccCCCCeEEEEEcCC
Q psy3710 259 ERPPLDIAAHEAPLSCIALNQT 280 (424)
Q Consensus 259 ~~~~~~~~~~~~~v~~~~~~~~ 280 (424)
. ...+..+.+.+...+|+|-
T Consensus 409 ~--~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 409 V--RLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred c--eEECcCCCCCcCCCccCCC
Confidence 2 3334445566777788763
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.8e-12 Score=115.45 Aligned_cols=233 Identities=12% Similarity=0.120 Sum_probs=163.0
Q ss_pred cCCceEEEEECCCCCeeEeecCCeEEEEeCCcCccccc------cccc--------------------------------
Q psy3710 9 YKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKER------QDFT-------------------------------- 50 (424)
Q Consensus 9 h~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~------~~~~-------------------------------- 50 (424)
|-.++++.++-. ++|.+|+.-.|.+||+..+..+.. ...|
T Consensus 6 ~~~~l~~~~~~~--~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~~ 83 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASNQII 83 (967)
T ss_pred ccccccchhhcc--ceeeecCCCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhhhhh
Confidence 444555666544 678888777799999876544211 1112
Q ss_pred ---CCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCe-----EEEEecCCceEEEe---ecc
Q psy3710 51 ---DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPV-----KGVRLRRDKIVVVL---EGL 119 (424)
Q Consensus 51 ---~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~---~~~ 119 (424)
...+..-.+......+++.. .++.+.+||...+.....+.+.... .-+.++++..++++ -+.
T Consensus 84 ~~~s~wi~g~~l~~e~k~i~l~~-------~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~ 156 (967)
T KOG0974|consen 84 ERFSDWIFGAKLFEENKKIALVT-------SRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGE 156 (967)
T ss_pred hhccccccccchhhhcceEEEEE-------cCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccccc
Confidence 00111111222344555555 4688999998888887777754432 22334677777776 789
Q ss_pred EEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCE
Q psy3710 120 IKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTR 199 (424)
Q Consensus 120 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 199 (424)
|.+|+...+..+. .+.+|.+. +..+.++.||+++++ .+.|.++++|++++.+......-+|.+.|..+.|.|+ .
T Consensus 157 iivW~~~~dn~p~-~l~GHeG~--iF~i~~s~dg~~i~s-~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~ 230 (967)
T KOG0974|consen 157 IIVWKPHEDNKPI-RLKGHEGS--IFSIVTSLDGRYIAS-VSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--R 230 (967)
T ss_pred EEEEeccccCCcc-eecccCCc--eEEEEEccCCcEEEE-EecCcceeeeecccccccCcccccccceeEEEEeccc--e
Confidence 9999997444444 56777744 888999999999998 9999999999999975555577799999999999998 9
Q ss_pred EEEEecCCcEEEEEECCCcceeeEEecc----eeeeeecCCCCeEEEEeecCCeEEEEeCCCCC
Q psy3710 200 LATASYKGTLIRVFDTGSGQKLNELRRG----LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE 259 (424)
Q Consensus 200 l~~~~~d~~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 259 (424)
+++++.|.+ .++|+.. ++.+..+..+ +..+. -+.+..++++++.|+.+++||+....
T Consensus 231 i~t~gedct-crvW~~~-~~~l~~y~~h~g~~iw~~~-~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 231 IITVGEDCT-CRVWGVN-GTQLEVYDEHSGKGIWKIA-VPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred eEEeccceE-EEEEecc-cceehhhhhhhhcceeEEE-EcCCceEEEeeccCcchhhhhhhccc
Confidence 999999999 9999764 4444455544 33343 45566677789999999999987643
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-11 Score=111.61 Aligned_cols=239 Identities=10% Similarity=0.035 Sum_probs=150.4
Q ss_pred EEEEeCCcCcccccccccCCCeeeEEEeccCceE--EEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCC
Q psy3710 33 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYL--ALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD 110 (424)
Q Consensus 33 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l--~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 110 (424)
|.+.|.+...... .....+....-.|+|+++.+ +.++... ....|.+.++.+++..+....++.....+|+||
T Consensus 167 l~~~d~dG~~~~~-lt~~~~~~~sP~wSPDG~~~~~~y~S~~~----g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 167 LWSVDYDGQNLRP-LTQEHSLSITPTWMHIGSGFPYLYVSYKL----GVPKIFLGSLENPAGKKILALQGNQLMPTFSPR 241 (428)
T ss_pred EEEEcCCCCCceE-cccCCCCcccceEccCCCceEEEEEEccC----CCceEEEEECCCCCceEeecCCCCccceEECCC
Confidence 6677766554432 22234556678999999874 3355321 235788889988876555556677778999999
Q ss_pred ceEEEe----ec--cEEE--EeecCC--CceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEe--CCCCCCCC
Q psy3710 111 KIVVVL----EG--LIKV--YTFIQC--PQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVD--LADPERPP 178 (424)
Q Consensus 111 ~~~~~~----~~--~i~v--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d--~~~~~~~~ 178 (424)
|..++. +| .+.+ |++... +.......... ......+|+|||+.|+++...+|...+|. +.......
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~--~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF--GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC--CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 977664 22 3333 565421 22222222211 11345789999999888555667655554 43221233
Q ss_pred cccccccCCeEEEEEccCCCEEEEEecC---CcEEEEEECCCcceeeEEec--ceeeeeecCCCCeEEEEeec--CCeEE
Q psy3710 179 LDIAAHEAPLSCIALNQTGTRLATASYK---GTLIRVFDTGSGQKLNELRR--GLCVLCPNSNNSLLAFPGRK--SGHVH 251 (424)
Q Consensus 179 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--dg~i~ 251 (424)
..+..+...+....|+|||+.|+..+.+ .. |.+||+.+++....... ......|+|++..+++++.. ...|+
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~-I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQ-ICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcE-EEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 4444455667889999999998876543 35 89999988865433322 34567899999999886654 35688
Q ss_pred EEeCCCCCCCCeeeccCCCCeEEEEEcCCC
Q psy3710 252 LVDLADPERPPLDIAAHEAPLSCIALNQTG 281 (424)
Q Consensus 252 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 281 (424)
++|+..++. ..+....+.+...+|+|-.
T Consensus 399 ~vdl~~g~~--~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 399 LISLITKKT--RKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEECCCCCE--EEeecCCCcccCceecCCC
Confidence 888877652 2232345556778888753
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.6e-12 Score=104.72 Aligned_cols=258 Identities=17% Similarity=0.163 Sum_probs=174.8
Q ss_pred ccCCceEEEEECCCC--CeeEeecCCe-EEEEeCCcCcccccc------cccCCCeeeEEEeccCceEEEEeCCcCCCcC
Q psy3710 8 TYKNGLLYAGFNQDQ--GCFACGMEDG-FRIYNCDPLKEKERQ------DFTDGGLGHVEMLFRCNYLALVGGGTHPKYP 78 (424)
Q Consensus 8 ~h~~~V~~~~~s~~g--~~la~g~~~~-i~iw~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~ 78 (424)
.....|..++|.-++ +.|...+.+. +..+........... .+..++|. ........|+++- .
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~--gl~~~dg~Litc~-------~ 123 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIK--GLKLADGTLITCV-------S 123 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCcccccccccccccccccccc--chhhcCCEEEEEe-------c
Confidence 345678888887665 3344332333 666666555443221 12233442 2233344455554 3
Q ss_pred CCeEEEEECCCCc----EEEEEeecCCeEEEEecCCceEEEe----e--ccEEEEeecCCCceeEEEeeCC-------CC
Q psy3710 79 NNRVMIWDDLKKQ----VVICLEFNAPVKGVRLRRDKIVVVL----E--GLIKVYTFIQCPQQLHVFETNP-------NP 141 (424)
Q Consensus 79 d~~i~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~----~--~~i~v~~~~~~~~~~~~~~~~~-------~~ 141 (424)
+|.+.+|..+.+. .+..+.....+..+.-++....+++ . ..+.+||+.+ .+++..-+.-. -|
T Consensus 124 sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~-~~qiw~aKNvpnD~L~LrVP 202 (412)
T KOG3881|consen 124 SGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ-SKQIWSAKNVPNDRLGLRVP 202 (412)
T ss_pred CCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeeccc-ceeeeeccCCCCccccceee
Confidence 6999999987443 3445555677777877776654443 3 5789999973 34443322211 23
Q ss_pred CeeEEEeecCC--CCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcc
Q psy3710 142 KGLCVLCPNSN--NSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ 219 (424)
Q Consensus 142 ~~~~~~~~~~~--~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~ 219 (424)
..+..+.|-+. ...+++ +..-+.+++||.+.+.+++..+.--..+++++...|.++.++++..-+. +..+|++.++
T Consensus 203 vW~tdi~Fl~g~~~~~fat-~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~k 280 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFAT-ITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGGK 280 (412)
T ss_pred eeeccceecCCCCCceEEE-EecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCce
Confidence 44556666665 667776 9999999999999988899999888999999999999999999999999 9999999998
Q ss_pred eeeE-E---ecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCC
Q psy3710 220 KLNE-L---RRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT 280 (424)
Q Consensus 220 ~~~~-~---~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 280 (424)
.... + .+.+..+..+|..+.++. ++-|..++|+|+.+.+..... --...++++-+.++
T Consensus 281 l~g~~~kg~tGsirsih~hp~~~~las-~GLDRyvRIhD~ktrkll~kv--YvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 281 LLGCGLKGITGSIRSIHCHPTHPVLAS-CGLDRYVRIHDIKTRKLLHKV--YVKSRLTFILLRDD 342 (412)
T ss_pred eeccccCCccCCcceEEEcCCCceEEe-eccceeEEEeecccchhhhhh--hhhccccEEEecCC
Confidence 7766 3 345777888887776665 899999999999985533222 12445666666554
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.8e-12 Score=114.87 Aligned_cols=212 Identities=13% Similarity=0.072 Sum_probs=140.4
Q ss_pred EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCce
Q psy3710 33 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKI 112 (424)
Q Consensus 33 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (424)
|.++|.+...... ...+...+....|+|+++.++++.... ....|++||+.+++......+...+.+++|+||+.
T Consensus 172 l~~~d~~g~~~~~-l~~~~~~~~~p~~Spdg~~la~~~~~~----~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 172 LQVADYDGANPQT-ITRSREPILSPAWSPDGQKLAYVSFES----GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred EEEEcCCCCCCEE-eecCCCceecccCCCCCCEEEEEEcCC----CCcEEEEEECCCCCEEEeecCCCCccceEECCCCC
Confidence 7788875443322 223455678889999999999887432 23689999999887665545666777899999986
Q ss_pred EEEe----e--ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCC--eEEEEeCCCCCCCCcccccc
Q psy3710 113 VVVL----E--GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSG--HVHLVDLADPERPPLDIAAH 184 (424)
Q Consensus 113 ~~~~----~--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg--~i~i~d~~~~~~~~~~~~~~ 184 (424)
.++. + ..|++|++. ++. ...+..+.. ......|+|+++.|++++...+ .|.++|+.++ ....+..+
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~-~~~-~~~l~~~~~--~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~--~~~~l~~~ 320 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLD-GKQ-LTRLTNGPG--IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG--EVRRLTFR 320 (417)
T ss_pred EEEEEECCCCCccEEEEECC-CCC-EEECCCCCC--CCCCEEECCCCCEEEEEECCCCCceEEEEECCCC--CEEEeecC
Confidence 5543 2 358888875 333 333333221 1234578999999887444444 5777777764 23344445
Q ss_pred cCCeEEEEEccCCCEEEEEecCC---cEEEEEECCCcceeeEEec-ceeeeeecCCCCeEEEEeecCC--eEEEEeCC
Q psy3710 185 EAPLSCIALNQTGTRLATASYKG---TLIRVFDTGSGQKLNELRR-GLCVLCPNSNNSLLAFPGRKSG--HVHLVDLA 256 (424)
Q Consensus 185 ~~~v~~~~~~~~~~~l~~~~~d~---~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dg--~i~i~d~~ 256 (424)
...+..+.|+|+|++++.++.++ . |.+||+.++........ ......++|++..++++...++ .+++.+..
T Consensus 321 ~~~~~~~~~spdg~~i~~~~~~~~~~~-i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 321 GGYNASPSWSPDGDLIAFVHREGGGFN-IAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CCCccCeEECCCCCEEEEEEccCCceE-EEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 56677889999999999888775 6 89999987643322211 2334578999999988666554 35555544
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.5e-11 Score=109.10 Aligned_cols=201 Identities=17% Similarity=0.091 Sum_probs=132.9
Q ss_pred eEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe----e--ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCC
Q psy3710 81 RVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL----E--GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNS 154 (424)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (424)
.|.++|...+.......+...+....|+||+..++. + ..|.+|++. +++... +.... .......|+|||+
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~-~g~~~~-l~~~~--g~~~~~~~SpDG~ 255 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLD-TGRREQ-ITNFE--GLNGAPAWSPDGS 255 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECC-CCCEEE-ccCCC--CCcCCeEECCCCC
Confidence 588888865554444456778899999999977664 2 368888985 443322 22222 1233578999999
Q ss_pred eEEEeeccCC--eEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecC---CcEEEEEECCCcceeeEE-ecc-
Q psy3710 155 LLAFPGRKSG--HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK---GTLIRVFDTGSGQKLNEL-RRG- 227 (424)
Q Consensus 155 ~l~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~~i~iwd~~~~~~~~~~-~~~- 227 (424)
.|+++...+| .|.+||+.++ ....+..+........|+|||+.++..+.. .. |+++|+.+++..... ...
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~-iy~~d~~~g~~~~lt~~~~~ 332 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASR--QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQ-IYKVNVNGGRAERVTFVGNY 332 (430)
T ss_pred EEEEEEccCCCceEEEEECCCC--CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCce-EEEEECCCCCEEEeecCCCC
Confidence 9987455555 6888898874 334455555666778999999988776642 24 788888777643322 222
Q ss_pred eeeeeecCCCCeEEEEeecCC--eEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCC
Q psy3710 228 LCVLCPNSNNSLLAFPGRKSG--HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKG 291 (424)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 291 (424)
.....++|++..++++...++ .|.++|+.+++. ..+. +........|+|||+.++..+.++
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~--~~lt-~~~~~~~p~~spdg~~i~~~~~~~ 395 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV--RILT-DTSLDESPSVAPNGTMLIYATRQQ 395 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCE--EEcc-CCCCCCCceECCCCCEEEEEEecC
Confidence 234678999999998765554 588899887653 2221 112223568999999888777653
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-11 Score=111.94 Aligned_cols=193 Identities=18% Similarity=0.237 Sum_probs=133.6
Q ss_pred CeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecC---CcEEEEEECCCcceeeE--EecceeeeeecCCCC
Q psy3710 164 GHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK---GTLIRVFDTGSGQKLNE--LRRGLCVLCPNSNNS 238 (424)
Q Consensus 164 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~ 238 (424)
..|.++|... .....+..+...+.+.+|+|+|++|+.+..+ .. |++||+.+++.... +.......+|+|+++
T Consensus 170 ~~l~~~d~~g--~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~-i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDG--ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPE-IYVQDLATGQREKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCC--CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcE-EEEEECCCCCEEEeecCCCCccceEECCCCC
Confidence 3577888764 3345555677788999999999999887654 36 99999988754432 233355678999999
Q ss_pred eEEEEeecCC--eEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEECCCCceee-------
Q psy3710 239 LLAFPGRKSG--HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKG---TLIRVFDTGSGQKLN------- 306 (424)
Q Consensus 239 ~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~~i~iwd~~~~~~~~------- 306 (424)
.++++.+.++ .|++||+.++. ...+..+........|+|||+.|+..+..+ . |.++|+.+++...
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~-iy~~d~~~~~~~~l~~~~~~ 323 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQ-IYMMDADGGEVRRLTFRGGY 323 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCce-EEEEECCCCCEEEeecCCCC
Confidence 9988766555 58888988754 233334555556779999999888766533 4 8888887665322
Q ss_pred ----eeccCCcEEEEEeCCC---cEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeE
Q psy3710 307 ----ELRRDSSYLCVSSDHG---TVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSI 379 (424)
Q Consensus 307 ----~~~~~~~~l~~~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 379 (424)
.++|+|++++.++.++ .|.+||+.++... .... .......+|+|||++|
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~-----------------------~~~~~~p~~spdg~~l 379 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTD-----------------------TGLDESPSFAPNGRMI 379 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccC-----------------------CCCCCCceECCCCCEE
Confidence 3678999999888776 7888998774321 1100 0011234799999999
Q ss_pred EEEeccC
Q psy3710 380 IVICADG 386 (424)
Q Consensus 380 ~~~~~dg 386 (424)
+..+.++
T Consensus 380 ~~~~~~~ 386 (417)
T TIGR02800 380 LYATTRG 386 (417)
T ss_pred EEEEeCC
Confidence 8887765
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.2e-11 Score=105.01 Aligned_cols=264 Identities=17% Similarity=0.174 Sum_probs=179.3
Q ss_pred cCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcc---------------cccccccCCCeeeEEEeccCceEEEEeCC
Q psy3710 9 YKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKE---------------KERQDFTDGGLGHVEMLFRCNYLALVGGG 72 (424)
Q Consensus 9 h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~---------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 72 (424)
......|++|+....++|+|+.+| +++..+.+... -...+.|.+.|..+.|......|.+..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD-- 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD-- 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC--
Confidence 345678999999999999999999 88888654322 122456899999999988877775555
Q ss_pred cCCCcCCCeEEEEECCCCcEEEEEe---ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEE
Q psy3710 73 THPKYPNNRVMIWDDLKKQVVICLE---FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCV 146 (424)
Q Consensus 73 ~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 146 (424)
.+|-|.+|-+-+|.-..++. .++.|.++.|+.||..++. ||.|.|=.++.+.-.-+.+++.. ...
T Consensus 91 -----t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~----l~h 161 (1189)
T KOG2041|consen 91 -----TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQL----LAH 161 (1189)
T ss_pred -----CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhe----ccc
Confidence 47999999987776544332 4567899999999865553 99998888752211112233322 345
Q ss_pred EeecCCCCeEEEeeccCCeEEEEeCCCCCCCCc----------ccccccCCeEEEEEc--------cCCCEEEEEecCCc
Q psy3710 147 LCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL----------DIAAHEAPLSCIALN--------QTGTRLATASYKGT 208 (424)
Q Consensus 147 ~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~----------~~~~~~~~v~~~~~~--------~~~~~l~~~~~d~~ 208 (424)
+.|++|.+.++. +-.+|.+.+||.+....... .+......|..+.|. |+...|+.+-..|.
T Consensus 162 v~ws~D~~~~Lf-~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr 240 (1189)
T KOG2041|consen 162 VLWSEDLEQALF-KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR 240 (1189)
T ss_pred eeecccHHHHHh-hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence 789999999888 99999999999875311000 011112235566663 46778999999998
Q ss_pred EEEEEECCCcceeeEEecc--eeeeeecCCCCeEEEEeecC--------CeEEEEeCCCCCCCCeeeccCCCCeEEEEEc
Q psy3710 209 LIRVFDTGSGQKLNELRRG--LCVLCPNSNNSLLAFPGRKS--------GHVHLVDLADPERPPLDIAAHEAPLSCIALN 278 (424)
Q Consensus 209 ~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 278 (424)
+.+..-++...-..+..+ +....|+++|..++++|... +.|++|..-. ....+++.....|++++|-
T Consensus 241 -~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G--~i~gtlkvpg~~It~lsWE 317 (1189)
T KOG2041|consen 241 -MQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG--HIVGTLKVPGSCITGLSWE 317 (1189)
T ss_pred -ehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccch--hheEEEecCCceeeeeEEc
Confidence 888765554333334444 44568999999999977632 3566665432 2345666677888988887
Q ss_pred CCCCEEEEE
Q psy3710 279 QTGTRLATA 287 (424)
Q Consensus 279 ~~~~~l~~~ 287 (424)
..|-.+|.+
T Consensus 318 g~gLriA~A 326 (1189)
T KOG2041|consen 318 GTGLRIAIA 326 (1189)
T ss_pred CCceEEEEE
Confidence 666555543
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-10 Score=102.93 Aligned_cols=291 Identities=14% Similarity=0.180 Sum_probs=178.4
Q ss_pred ccccccCCceEEEEECCC------------CCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccC----ceE
Q psy3710 4 GTSSTYKNGLLYAGFNQD------------QGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRC----NYL 66 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~------------g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l 66 (424)
..+..|...|+.+.|.|- .-+||++.-.| |.+||......+.....+..++..++|.+.. +.|
T Consensus 49 qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~L 128 (1062)
T KOG1912|consen 49 QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVL 128 (1062)
T ss_pred hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchhee
Confidence 346779999999999873 12566777777 9999998888877788888999999998643 445
Q ss_pred EEEeCCcCCCcCCCeEEEEECCCCcEEEEEeec-CCeEEEEecCC-----------ceEEE-------------------
Q psy3710 67 ALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFN-APVKGVRLRRD-----------KIVVV------------------- 115 (424)
Q Consensus 67 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~-----------~~~~~------------------- 115 (424)
+...+ ..++.+|+..+|+...++... ....|+.+.|- |.++.
T Consensus 129 laIh~-------ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~ 201 (1062)
T KOG1912|consen 129 LAIHG-------SSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT 201 (1062)
T ss_pred EEecC-------CcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence 55553 479999999999988766633 23333444331 11111
Q ss_pred ------------------------------------------------eeccEEEEeecCCCceeEEEeeCCCCCeeEEE
Q psy3710 116 ------------------------------------------------LEGLIKVYTFIQCPQQLHVFETNPNPKGLCVL 147 (424)
Q Consensus 116 ------------------------------------------------~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (424)
....+.++|++ -...+.......+......+
T Consensus 202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle-~~~~l~vvpier~~akfv~v 280 (1062)
T KOG1912|consen 202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLE-YECCLAVVPIERGGAKFVDV 280 (1062)
T ss_pred cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcch-hhceeEEEEeccCCcceeEe
Confidence 12223333332 22222222222222234444
Q ss_pred eecCCCCeEEEeeccCCeEEEEeCCCCC----------------C------------------C----------------
Q psy3710 148 CPNSNNSLLAFPGRKSGHVHLVDLADPE----------------R------------------P---------------- 177 (424)
Q Consensus 148 ~~~~~~~~l~~~~~~dg~i~i~d~~~~~----------------~------------------~---------------- 177 (424)
-+.|....|++ ...||.+.+|-.+... + +
T Consensus 281 lP~~~rd~Lfc-lH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~ 359 (1062)
T KOG1912|consen 281 LPDPRRDALFC-LHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDST 359 (1062)
T ss_pred ccCCCcceEEE-EecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhH
Confidence 45555666776 8888988888654310 0 0
Q ss_pred ---Cc-------------------------------------ccccccCCeEEEEEcc-----------CC-------CE
Q psy3710 178 ---PL-------------------------------------DIAAHEAPLSCIALNQ-----------TG-------TR 199 (424)
Q Consensus 178 ---~~-------------------------------------~~~~~~~~v~~~~~~~-----------~~-------~~ 199 (424)
+. .-.+|.....+....| .| ..
T Consensus 360 ~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pL 439 (1062)
T KOG1912|consen 360 FWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPL 439 (1062)
T ss_pred HHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeee
Confidence 00 0001222222222222 11 25
Q ss_pred EEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEE--------EeecCCeEEEEeCCCCCCCCe--eec
Q psy3710 200 LATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAF--------PGRKSGHVHLVDLADPERPPL--DIA 266 (424)
Q Consensus 200 l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--------~~~~dg~i~i~d~~~~~~~~~--~~~ 266 (424)
++.|...|+ |.++|+.++.....+..+ +..+-|-.....+-+ +|..-+.+.+-|++++..... ..+
T Consensus 440 vAvGT~sGT-V~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~ 518 (1062)
T KOG1912|consen 440 VAVGTNSGT-VDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK 518 (1062)
T ss_pred EEeecCCce-EEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence 678888999 999999988766655543 333333333222222 244556788999999864322 123
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCcee
Q psy3710 267 AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL 305 (424)
Q Consensus 267 ~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~ 305 (424)
....+|..+..|..++||+..-.+.- +.+||+++..++
T Consensus 519 ~despI~~irvS~~~~yLai~Fr~~p-lEiwd~kt~~~l 556 (1062)
T KOG1912|consen 519 PDESPIRAIRVSSSGRYLAILFRREP-LEIWDLKTLRML 556 (1062)
T ss_pred CCcCcceeeeecccCceEEEEecccc-hHHHhhccchHH
Confidence 56789999999999999999999998 999999765443
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-11 Score=99.00 Aligned_cols=231 Identities=17% Similarity=0.209 Sum_probs=162.5
Q ss_pred ecCCeEEEEecC--CceEEEe-eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCC
Q psy3710 98 FNAPVKGVRLRR--DKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADP 174 (424)
Q Consensus 98 ~~~~v~~~~~~~--~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~ 174 (424)
+.+.+++...-| ++.+-++ |.+++||--++.++....+. |..|..+.++.+.++...|++ |-.+|++.-+.+...
T Consensus 23 ~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~e~~~L~v-g~~ngtvtefs~sed 100 (404)
T KOG1409|consen 23 SQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVSESRRLYV-GQDNGTVTEFALSED 100 (404)
T ss_pred chhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeeccceEEEE-EEecceEEEEEhhhh
Confidence 344455544433 3444444 88999998765555554443 455677889999999999998 999999999977643
Q ss_pred C---CCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEE
Q psy3710 175 E---RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVH 251 (424)
Q Consensus 175 ~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~ 251 (424)
. ..++....|...+..+-|+...+++++.+.|.. +.---.+.+..+..+.......+...+-. .++.|...|.|.
T Consensus 101 fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~-~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~-~~fvGd~~gqvt 178 (404)
T KOG1409|consen 101 FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQ-FAWHCTESGNRLGGYNFETPASALQFDAL-YAFVGDHSGQIT 178 (404)
T ss_pred hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccc-eEEEeeccCCcccceEeeccCCCCceeeE-EEEecccccceE
Confidence 1 345566789999999999998999999999997 55444555554433322111111111111 455577888887
Q ss_pred EEeCCCCC-CCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceee-ee------------ccCCcEEEE
Q psy3710 252 LVDLADPE-RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN-EL------------RRDSSYLCV 317 (424)
Q Consensus 252 i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~------------~~~~~~l~~ 317 (424)
+-.+.... .++..+.+|.+.+++++|.|..+.|.++..|.. +.+||+--.+-+. ++ -+.-+.+++
T Consensus 179 ~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~-vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S 257 (404)
T KOG1409|consen 179 MLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS-VIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLIS 257 (404)
T ss_pred EEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc-eEEEeccCCcceeeeeccchhhhhhhhhhhhheeeee
Confidence 77665433 356678899999999999999999999999999 9999997543322 11 134578999
Q ss_pred EeCCCcEEEEEccccc
Q psy3710 318 SSDHGTVHVFSVDEAQ 333 (424)
Q Consensus 318 ~~~d~~i~iw~~~~~~ 333 (424)
++.||.|.+|+++...
T Consensus 258 ~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 258 CGEDGGIVVWNMNVKR 273 (404)
T ss_pred ccCCCeEEEEecccee
Confidence 9999999999998743
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-11 Score=109.15 Aligned_cols=210 Identities=10% Similarity=0.038 Sum_probs=130.2
Q ss_pred ccccCCceEEEEECCCCCeeE---eecCCe---EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCC
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFA---CGMEDG---FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPN 79 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la---~g~~~~---i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d 79 (424)
+......+.+-+|||||+.++ +...++ |.+.+++.++....... .+......|+||++.|++++.... ..+
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-~g~~~~p~wSPDG~~Laf~s~~~g--~~d 256 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-QGNQLMPTFSPRKKLLAFISDRYG--NPD 256 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC-CCCccceEECCCCCEEEEEECCCC--Ccc
Confidence 444556677889999997532 444443 88889887765443333 445556899999999998873210 023
Q ss_pred CeEEEEECCCC---cEEEEEee-cCCeEEEEecCCceEEEe----eccEEEEee--cCCCceeEEEeeCCCCCeeEEEee
Q psy3710 80 NRVMIWDDLKK---QVVICLEF-NAPVKGVRLRRDKIVVVL----EGLIKVYTF--IQCPQQLHVFETNPNPKGLCVLCP 149 (424)
Q Consensus 80 ~~i~iwd~~~~---~~~~~~~~-~~~v~~~~~~~~~~~~~~----~~~i~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 149 (424)
..+.+|++..+ +....... .+......|+||+..++. ++...+|.+ ...+.....+.... .......|
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~--~~~~~p~w 334 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY--RNSSCPAW 334 (428)
T ss_pred eeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC--CCccceeE
Confidence 44555777653 33322222 234467899999976654 455555544 21222233333322 23456789
Q ss_pred cCCCCeEEEeeccC--CeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEec---CCcEEEEEECCCcceeeE
Q psy3710 150 NSNNSLLAFPGRKS--GHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY---KGTLIRVFDTGSGQKLNE 223 (424)
Q Consensus 150 ~~~~~~l~~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~~i~iwd~~~~~~~~~ 223 (424)
+|||+.|++++..+ ..|.+||+.++ + ...+......+....|+|||+.|+.... ... |.++|+..++....
T Consensus 335 SPDG~~Laf~~~~~g~~~I~v~dl~~g-~-~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~-L~~vdl~~g~~~~L 410 (428)
T PRK01029 335 SPDGKKIAFCSVIKGVRQICVYDLATG-R-DYQLTTSPENKESPSWAIDSLHLVYSAGNSNESE-LYLISLITKKTRKI 410 (428)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCC-C-eEEccCCCCCccceEECCCCCEEEEEECCCCCce-EEEEECCCCCEEEe
Confidence 99999998844443 46899999875 2 2333333445678999999998875443 245 88899987765433
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-11 Score=112.16 Aligned_cols=207 Identities=12% Similarity=0.047 Sum_probs=127.3
Q ss_pred ccccCCceEEEEECCCCCeeEeec-CCe---EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCe
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGM-EDG---FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNR 81 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~-~~~---i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 81 (424)
+..+...+.+.+|||||+.|+..+ .++ |.+||+.+++....... .+......|+|+++.++++.... ....
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~g~~~~~~wSPDG~~La~~~~~~----g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-PGINGAPRFSPDGKKLALVLSKD----GQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-CCCcCCeeECCCCCEEEEEEeCC----CCeE
Confidence 445566788999999999998653 232 88999887765332222 33445689999999998765321 1236
Q ss_pred EEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe----ec--cEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCe
Q psy3710 82 VMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL----EG--LIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSL 155 (424)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (424)
|+++|+.+++......+........|+||+..++. ++ .|.++|+. +++. ..+.... .......|+|||++
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~-~g~~-~~Lt~~g--~~~~~~~~SpDG~~ 363 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA-SGKV-SRLTFEG--EQNLGGSITPDGRS 363 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCE-EEEecCC--CCCcCeeECCCCCE
Confidence 88889988876544335556678899999976654 33 45555654 3332 2232111 11234578999999
Q ss_pred EEEeeccCC--eEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCc--EEEEEECCCcceeeEEe
Q psy3710 156 LAFPGRKSG--HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGT--LIRVFDTGSGQKLNELR 225 (424)
Q Consensus 156 l~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--~i~iwd~~~~~~~~~~~ 225 (424)
|+.++..++ .|.++|+.++ . ...+... .......|+|+|+.|+..+.++. .+++++. +++....+.
T Consensus 364 l~~~~~~~g~~~I~~~dl~~g-~-~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~ 433 (448)
T PRK04792 364 MIMVNRTNGKFNIARQDLETG-A-MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLP 433 (448)
T ss_pred EEEEEecCCceEEEEEECCCC-C-eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECc
Confidence 988555555 4555677664 2 2222222 12234579999998877664432 2666676 444444443
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.3e-10 Score=96.53 Aligned_cols=234 Identities=12% Similarity=0.061 Sum_probs=158.4
Q ss_pred ECCCCCeeEeecC-----------CeEEEEeCCcCcccccccccCC-------CeeeEEEeccCceEEEEeCCcCCCcCC
Q psy3710 18 FNQDQGCFACGME-----------DGFRIYNCDPLKEKERQDFTDG-------GLGHVEMLFRCNYLALVGGGTHPKYPN 79 (424)
Q Consensus 18 ~s~~g~~la~g~~-----------~~i~iw~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~~~~~~~~~~~d 79 (424)
+||||+.|.++.. +.|.+||..+.+.......... .-..+.++++++++++.... .+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~-----p~ 127 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS-----PS 127 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC-----CC
Confidence 9999998886554 3399999999988655443211 22358899999999877644 37
Q ss_pred CeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe-eccEEEEeecCCCceeE-EEee---CCCCCeeEEEeecC-CC
Q psy3710 80 NRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQLH-VFET---NPNPKGLCVLCPNS-NN 153 (424)
Q Consensus 80 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~-~~ 153 (424)
..|.+.|+.+++.+.++.-++...-...+++..++.+ ||......+..+++... .... ...+....- .+.+ ++
T Consensus 128 ~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg 206 (352)
T TIGR02658 128 PAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP-AYSNKSG 206 (352)
T ss_pred CEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC-ceEcCCC
Confidence 9999999999999999997666666666666655544 87777766654444221 1111 011100000 2244 78
Q ss_pred CeEEEeeccCCeEEEEeCCCCC----CCCcccc-------cccCCeEEEEEccCCCEEEEEe----------cCCcEEEE
Q psy3710 154 SLLAFPGRKSGHVHLVDLADPE----RPPLDIA-------AHEAPLSCIALNQTGTRLATAS----------YKGTLIRV 212 (424)
Q Consensus 154 ~~l~~~~~~dg~i~i~d~~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~----------~d~~~i~i 212 (424)
+++.+ ..+ |.|.+.|+.... .....+. -..+...-++++|+++.++... ..+. |.+
T Consensus 207 ~~~~v-s~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~-V~V 283 (352)
T TIGR02658 207 RLVWP-TYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF-LFV 283 (352)
T ss_pred cEEEE-ecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE-EEE
Confidence 88876 555 999999975431 1111111 0223344599999999888743 1135 999
Q ss_pred EECCCcceeeEEecc--eeeeeecCCCC-eEEEEeecCCeEEEEeCCCCCC
Q psy3710 213 FDTGSGQKLNELRRG--LCVLCPNSNNS-LLAFPGRKSGHVHLVDLADPER 260 (424)
Q Consensus 213 wd~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~dg~i~i~d~~~~~~ 260 (424)
+|..+++.+..+..+ ...++++|+++ .++++...++.|.++|..+.+.
T Consensus 284 iD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 284 VDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred EECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 999999999988754 67789999999 6666666789999999988763
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-11 Score=98.88 Aligned_cols=280 Identities=13% Similarity=0.129 Sum_probs=182.3
Q ss_pred CCceEEEEECCCCCeeEeecCCe-EEEEeCCcC----cccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEE
Q psy3710 10 KNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPL----KEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMI 84 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 84 (424)
..+++++.+.++...|.+|-++| +.-+.+... ........|...+..+-|+.....+++.+ .|..+.-
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~-------~dk~~~~ 140 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTG-------KDKQFAW 140 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEec-------cccceEE
Confidence 56789999999999999999999 887775432 22333445788999999988888888888 4555554
Q ss_pred EECCCCcEEEEEeecCCeEEEEecCCceEEEe-eccEEEEeecC-CCceeEEEeeCCCCCeeEEEeecCCCCeEEEeecc
Q psy3710 85 WDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQ-CPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRK 162 (424)
Q Consensus 85 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (424)
--.+.+..+..+.......++.+.-.-.++.- .|.|....+.. ...++..+.+|... +.+++|.+....|.+ |..
T Consensus 141 hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~--~~~l~Wd~~~~~LfS-g~~ 217 (404)
T KOG1409|consen 141 HCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGE--VTCLKWDPGQRLLFS-GAS 217 (404)
T ss_pred EeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccc--eEEEEEcCCCcEEEe-ccc
Confidence 44555555544443332222222211111111 56666665542 34566677777644 888999998888887 999
Q ss_pred CCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeE----------Eec------
Q psy3710 163 SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE----------LRR------ 226 (424)
Q Consensus 163 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~----------~~~------ 226 (424)
|..+.+||+.........+.+|.+.|..+...+--+.+.+++.||. |.+||+........ ...
T Consensus 218 d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~-i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~ 296 (404)
T KOG1409|consen 218 DHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG-IVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNF 296 (404)
T ss_pred cCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe-EEEEeccceeecCccccccchhhhhCchHHHHH
Confidence 9999999999876677788999999999999888899999999999 99999975431110 000
Q ss_pred -------------c-----eeeeeecC-CCCeEEEEeecCCeEEEEeCCCC------CCCCeeeccCCCCeEEEEEcCCC
Q psy3710 227 -------------G-----LCVLCPNS-NNSLLAFPGRKSGHVHLVDLADP------ERPPLDIAAHEAPLSCIALNQTG 281 (424)
Q Consensus 227 -------------~-----~~~~~~~~-~~~~~~~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~~~~ 281 (424)
+ ...++-.. +.......-+..-.+++-|.-.. ..+......-...|+.+.+..+-
T Consensus 297 ~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetl 376 (404)
T KOG1409|consen 297 RQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETL 376 (404)
T ss_pred HHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhc
Confidence 0 01111111 11111111222334444433211 12233333335578899988888
Q ss_pred CEEEEEeCCCcEEEEEECCC
Q psy3710 282 TRLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 282 ~~l~~~~~d~~~i~iwd~~~ 301 (424)
.+|+|++.|.. |+|||++.
T Consensus 377 glLvTsG~~Rv-i~iwd~~~ 395 (404)
T KOG1409|consen 377 GLLVTSGTDRV-IKIWDVRS 395 (404)
T ss_pred cceeecCCceE-EEEEechh
Confidence 89999999999 99999874
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-10 Score=98.89 Aligned_cols=293 Identities=11% Similarity=0.071 Sum_probs=196.5
Q ss_pred CceEEEEECCCCCeeEeecCC----------------eEEEEeCCcCcccccccccCCC--ee-eEEEeccCceEEEEeC
Q psy3710 11 NGLLYAGFNQDQGCFACGMED----------------GFRIYNCDPLKEKERQDFTDGG--LG-HVEMLFRCNYLALVGG 71 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la~g~~~----------------~i~iw~~~~~~~~~~~~~~~~~--i~-~~~~~~~~~~l~~~~~ 71 (424)
..|..+.|||.+++|.+=+.. .+.+||+.++..+........+ .. .+.|+.+.++.|-+.+
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~ 151 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG 151 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence 458889999999999864332 2689999999886655543332 22 5889999999887763
Q ss_pred CcCCCcCCCeEEEEECCCCcEE-EEEe--ecCCeEEEEecCCc--eEEEe--------eccEEEEeecCCCceeEEEeeC
Q psy3710 72 GTHPKYPNNRVMIWDDLKKQVV-ICLE--FNAPVKGVRLRRDK--IVVVL--------EGLIKVYTFIQCPQQLHVFETN 138 (424)
Q Consensus 72 ~~~~~~~d~~i~iwd~~~~~~~-~~~~--~~~~v~~~~~~~~~--~~~~~--------~~~i~v~~~~~~~~~~~~~~~~ 138 (424)
..+.|+++ ++... ..+. -...+....++|.+ ..++. .+.+++|.+. .+..+.+....
T Consensus 152 --------~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp-~~s~l~tk~lf 221 (561)
T COG5354 152 --------SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP-KNSVLVTKNLF 221 (561)
T ss_pred --------CeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc-CCCeeeeeeeE
Confidence 68999997 43332 1222 14667888888873 23332 6789999985 44444332222
Q ss_pred CCCCeeEEEeecCCCCeEEEee----------ccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEe--cC
Q psy3710 139 PNPKGLCVLCPNSNNSLLAFPG----------RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS--YK 206 (424)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d 206 (424)
. ..-+.+.|++.|++|++-. .....+.++++... .+.....-.++|...+|.|.++.+++.+ .+
T Consensus 222 k--~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~--~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~p 297 (561)
T COG5354 222 K--VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER--SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMP 297 (561)
T ss_pred e--ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc--ccceeccccccceeeeecccCCceeEEecccc
Confidence 2 2245788888888876511 11356888888753 2222225689999999999988776655 56
Q ss_pred CcEEEEEECCCcceeeEEe-cceeeeeecCCCCeEEEEee--cCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCE
Q psy3710 207 GTLIRVFDTGSGQKLNELR-RGLCVLCPNSNNSLLAFPGR--KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTR 283 (424)
Q Consensus 207 ~~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 283 (424)
.. +.++|++.+ ....++ ..-..+.|+|.+.+++++|- ..|.+.+||..........+.+ ...+-+.|+||+++
T Consensus 298 a~-~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~--~n~s~~~wspd~qF 373 (561)
T COG5354 298 AS-VSVFDLRGN-LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG--LNTSYCDWSPDGQF 373 (561)
T ss_pred cc-eeecccccc-eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec--CCceEeeccCCceE
Confidence 66 999999877 333333 44677889999999999654 4588999998875543323322 23455689999998
Q ss_pred EEEEeC------CCcEEEEEECCCCcee----eeeccCCcEEEEEeCCC
Q psy3710 284 LATASY------KGTLIRVFDTGSGQKL----NELRRDSSYLCVSSDHG 322 (424)
Q Consensus 284 l~~~~~------d~~~i~iwd~~~~~~~----~~~~~~~~~l~~~~~d~ 322 (424)
+.+... |.. |+|||+...... ..|.|.+++..+.+.+.
T Consensus 374 ~~~~~ts~k~~~Dn~-i~l~~v~g~~~fel~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 374 YDTDTTSEKLRVDNS-IKLWDVYGAKVFELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred EEecCCCcccccCcc-eEEEEecCchhhhhhhccccCCcccceeeccCC
Confidence 887643 667 999999765433 24567777766666544
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.2e-09 Score=90.57 Aligned_cols=130 Identities=12% Similarity=0.134 Sum_probs=92.6
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceee-----------eeccCCcEEEEEeCCCcEEEEEccccccc
Q psy3710 267 AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN-----------ELRRDSSYLCVSSDHGTVHVFSVDEAQKI 335 (424)
Q Consensus 267 ~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~-----------~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 335 (424)
+|...|.-..+..+++-++.|..||..+-|+|.++++... ..+++|++++++.....|.+.|+++|...
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~ 436 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR 436 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence 4566677777777777788888888338888888776433 24678888888888888888888886531
Q ss_pred cccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccC----cEEEEEecCCcceee----eeehhh
Q psy3710 336 NKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADG----SYYKFMFNSKGECWR----DVYIQF 407 (424)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg----~v~~~~~~~~~~~~~----~~~~~~ 407 (424)
.. -+...+.++..+|+|+++++|.+--+| .|++||+. +++... +.+.-.
T Consensus 437 ~i----------------------dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~-~~Kiy~vTT~ta~Dfs 493 (668)
T COG4946 437 LI----------------------DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD-GGKIYDVTTPTAYDFS 493 (668)
T ss_pred Ee----------------------cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC-CCeEEEecCCcccccC
Confidence 11 011235688999999999999988777 68999997 666665 333445
Q ss_pred heecCCCceeeE
Q psy3710 408 LEMTNDSNLLSC 419 (424)
Q Consensus 408 ~~~~~d~~~l~~ 419 (424)
.+|-||+++|-.
T Consensus 494 PaFD~d~ryLYf 505 (668)
T COG4946 494 PAFDPDGRYLYF 505 (668)
T ss_pred cccCCCCcEEEE
Confidence 667889988754
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-11 Score=114.92 Aligned_cols=183 Identities=14% Similarity=0.184 Sum_probs=140.6
Q ss_pred cCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecce------eeeeecCCCCeEEEEeecCCeEEEEeCCCC
Q psy3710 185 EAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGL------CVLCPNSNNSLLAFPGRKSGHVHLVDLADP 258 (424)
Q Consensus 185 ~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 258 (424)
.+.|....+..+.+.++....+.. +.+||...+........+. ..+......+..+++|+.-+.|.+|+....
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns-~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNS-LLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred cccccccchhhhcceEEEEEcCce-EEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc
Confidence 344555556666778888888888 9999998887776666542 223334556667777999999999999954
Q ss_pred CCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeee-------------eccCCcEEEEEeCCCcEE
Q psy3710 259 ERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE-------------LRRDSSYLCVSSDHGTVH 325 (424)
Q Consensus 259 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~-------------~~~~~~~l~~~~~d~~i~ 325 (424)
+.+. .+.+|++.|.++.++.||+++++.|+|.+ +|+|++++++.+.. +.|+ .+++++.|-+.+
T Consensus 166 n~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRs-iRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcr 241 (967)
T KOG0974|consen 166 NKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRS-IRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCR 241 (967)
T ss_pred CCcc-eecccCCceEEEEEccCCcEEEEEecCcc-eeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEE
Confidence 4444 56799999999999999999999999999 99999999876551 2344 999999999999
Q ss_pred EEEccccccccccccceeeeccCccccCCceeeEEeec-CCCceEEEEecCCCeEEEEeccCcEEEEEecC
Q psy3710 326 VFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIP-SDPPCICAFGADSNSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 326 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~ 395 (424)
+|+.+.. .+.. ++.| ...+..++..++...+++++.||.+++|++..
T Consensus 242 vW~~~~~-~l~~----------------------y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 242 VWGVNGT-QLEV----------------------YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEecccc-eehh----------------------hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9976552 2221 2222 23467889999999999999999999999873
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-08 Score=99.87 Aligned_cols=276 Identities=14% Similarity=0.169 Sum_probs=176.1
Q ss_pred cCCceEEEEECCCCCeeEeecCCe-EEEE----eCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEE
Q psy3710 9 YKNGLLYAGFNQDQGCFACGMEDG-FRIY----NCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVM 83 (424)
Q Consensus 9 h~~~V~~~~~s~~g~~la~g~~~~-i~iw----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~ 83 (424)
..+.|.++.|-++...+..+..+| |.+. +...... ..-..-+.+|.+++|+||...++++++ ++++.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~-------~~~l~ 145 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTG-------EGNLL 145 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeC-------CCEEE
Confidence 346899999999998888888888 7777 4333322 222233778999999999999999995 46666
Q ss_pred EEECCCCcEE------------------------EEEe-------------------------ecCCeEEEEecCCceEE
Q psy3710 84 IWDDLKKQVV------------------------ICLE-------------------------FNAPVKGVRLRRDKIVV 114 (424)
Q Consensus 84 iwd~~~~~~~------------------------~~~~-------------------------~~~~v~~~~~~~~~~~~ 114 (424)
+.+- +.+++ ..|. ....-..++|..||.++
T Consensus 146 ~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yF 224 (928)
T PF04762_consen 146 LMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYF 224 (928)
T ss_pred EEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEE
Confidence 6532 11111 1110 11123467889999888
Q ss_pred Ee-------e--ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeecc--CCeEEEEeCCCCCCCCccc--
Q psy3710 115 VL-------E--GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRK--SGHVHLVDLADPERPPLDI-- 181 (424)
Q Consensus 115 ~~-------~--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--dg~i~i~d~~~~~~~~~~~-- 181 (424)
|. + ..++||+- .+....+-+.-. .--.+++|-|.|++||++-.. ...|.+|.-+.-+.--..+
T Consensus 225 AVss~~~~~~~~R~iRVy~R--eG~L~stSE~v~--gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~ 300 (928)
T PF04762_consen 225 AVSSVEPETGSRRVIRVYSR--EGELQSTSEPVD--GLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRF 300 (928)
T ss_pred EEEEEEcCCCceeEEEEECC--CceEEeccccCC--CccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCC
Confidence 75 2 47889985 344433333222 123368999999999974332 3566777655421111122
Q ss_pred ccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcc--eeeEEe--cc--eeeeeecCCCCeEEEEeecCCeEEEEeC
Q psy3710 182 AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ--KLNELR--RG--LCVLCPNSNNSLLAFPGRKSGHVHLVDL 255 (424)
Q Consensus 182 ~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~--~~~~~~--~~--~~~~~~~~~~~~~~~~~~~dg~i~i~d~ 255 (424)
......|..+.|++|+..|+..-.|. |.+|-..+.. ..+++. .. ...+.|+|....-+...+.+|.+..++.
T Consensus 301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~--vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 301 DPEEEKVIELAWNSDSEILAVWLEDR--VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCCCceeeEEEECCCCCEEEEEecCC--ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 24567899999999999999977665 9999987753 222222 22 3447888877665555665565554433
Q ss_pred C----CC---------------------------C-C-CC--eeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 256 A----DP---------------------------E-R-PP--LDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 256 ~----~~---------------------------~-~-~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
. .. . + |. ..+ .-..+|.+++|++++..+++-..||. |.+|...
T Consensus 379 ~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~~~~~avl~~d~~-l~~~~~~ 456 (928)
T PF04762_consen 379 AWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPSNSRFAVLTSDGS-LSIYEWD 456 (928)
T ss_pred EEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE-cCCCCcEEEEEeCCCCeEEEEECCCC-EEEEEec
Confidence 2 11 0 0 00 011 23578999999999888999999999 8998854
Q ss_pred C
Q psy3710 301 S 301 (424)
Q Consensus 301 ~ 301 (424)
.
T Consensus 457 ~ 457 (928)
T PF04762_consen 457 L 457 (928)
T ss_pred C
Confidence 3
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-08 Score=98.83 Aligned_cols=351 Identities=12% Similarity=0.141 Sum_probs=208.5
Q ss_pred CceEEEEECCCCCeeE--eecCCe---EEEEeCCcCc---ccccc-----cccCCCeeeEEEeccCceEEEEeCCcCCCc
Q psy3710 11 NGLLYAGFNQDQGCFA--CGMEDG---FRIYNCDPLK---EKERQ-----DFTDGGLGHVEMLFRCNYLALVGGGTHPKY 77 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la--~g~~~~---i~iw~~~~~~---~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~ 77 (424)
..+...+|.+....+. ++.... |.+-...... .+... ....+.|..+.+.++.+.++++.
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~------- 94 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIAL------- 94 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEE-------
Confidence 4577778877664444 332222 3333322222 11111 12356788899999999888888
Q ss_pred CCCeEEEE----ECCCCcEEEEEeecCCeEEEEecCCceEEEe---eccEEEEeecCCCcee------------------
Q psy3710 78 PNNRVMIW----DDLKKQVVICLEFNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQL------------------ 132 (424)
Q Consensus 78 ~d~~i~iw----d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~------------------ 132 (424)
.+|.|.+. +..+......=.....|.+++||||...++. ++++.+.+- +..++
T Consensus 95 ~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~--~fd~i~E~~l~~~~~~~~~~VsV 172 (928)
T PF04762_consen 95 ASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR--DFDPISEVPLDSDDFGESKHVSV 172 (928)
T ss_pred CCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec--cceEEEEeecCccccCCCceeee
Confidence 46889888 5544443333336889999999999977764 556655432 11111
Q ss_pred ------EEEeeC------------C----------CCCeeEEEeecCCCCeEEEeec--cC---CeEEEEeCCCCCCCCc
Q psy3710 133 ------HVFETN------------P----------NPKGLCVLCPNSNNSLLAFPGR--KS---GHVHLVDLADPERPPL 179 (424)
Q Consensus 133 ------~~~~~~------------~----------~~~~~~~~~~~~~~~~l~~~~~--~d---g~i~i~d~~~~~~~~~ 179 (424)
..|.+. . .......++|-.||.++|++.- .. ..+++|+-+. ....
T Consensus 173 GWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG--~L~s 250 (928)
T PF04762_consen 173 GWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG--ELQS 250 (928)
T ss_pred ccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc--eEEe
Confidence 011100 0 0113457889999999998432 22 5789998763 3322
Q ss_pred ccccccCCeEEEEEccCCCEEEEEec---CCcEEEEEECCCcceeeEEec-------ceeeeeecCCCCeEEEEeecCCe
Q psy3710 180 DIAAHEAPLSCIALNQTGTRLATASY---KGTLIRVFDTGSGQKLNELRR-------GLCVLCPNSNNSLLAFPGRKSGH 249 (424)
Q Consensus 180 ~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~dg~ 249 (424)
..+.-.+--.+++|.|.|+++++... ... |.+|. ++|-...+|.- .+..+.|++++..+++.- ...
T Consensus 251 tSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~-VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~--~~~ 326 (928)
T PF04762_consen 251 TSEPVDGLEGALSWRPSGNLIASSQRLPDRHD-VVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWL--EDR 326 (928)
T ss_pred ccccCCCccCCccCCCCCCEEEEEEEcCCCcE-EEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEe--cCC
Confidence 33333344467899999999998865 334 77776 45555444432 267799999999999844 334
Q ss_pred EEEEeCCCCCCCCe-eec-cCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEECCCCceee-eeccCCcEEEEEeCCCcEE
Q psy3710 250 VHLVDLADPERPPL-DIA-AHEAPLSCIALNQT-GTRLATASYKGTLIRVFDTGSGQKLN-ELRRDSSYLCVSSDHGTVH 325 (424)
Q Consensus 250 i~i~d~~~~~~~~~-~~~-~~~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~~l~~~~~d~~i~ 325 (424)
|++|-..+..-..+ .+. .....+..+.|+|. ...|...+.++. +..++..-..... ...|+..-.+..=+..++.
T Consensus 327 vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~-~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~ll 405 (928)
T PF04762_consen 327 VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQ-YEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLL 405 (928)
T ss_pred ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCc-EEEEEEEEEEEecCCCCccCceEEEEEeCCeEE
Confidence 99999988653222 222 22344556999994 456777777676 6665543111111 1223222233333334566
Q ss_pred EEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecC
Q psy3710 326 VFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 326 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~ 395 (424)
+-.+...-.. ++. ....+.. ..++..++|++++..+++-..||.+.+|....
T Consensus 406 lTpf~~a~VP---PPM--------------s~~~l~~-~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 406 LTPFRRAVVP---PPM--------------SSYELEL-PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred EecccccCCC---chH--------------hceEEcC-CCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 6666553211 110 1112222 35789999999998899999999999999653
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-10 Score=100.45 Aligned_cols=186 Identities=16% Similarity=0.203 Sum_probs=140.9
Q ss_pred ccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe----ecCCeEEEEe------c--------------CCceEEEe
Q psy3710 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE----FNAPVKGVRL------R--------------RDKIVVVL 116 (424)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~------~--------------~~~~~~~~ 116 (424)
+...++|+.. .||.+++|+..+++....+. ..+...+..| + .+...++.
T Consensus 3 ~~~~~~A~~~-------~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvl 75 (541)
T KOG4547|consen 3 PALDYFALST-------GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVL 75 (541)
T ss_pred chhheEeecC-------CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEe
Confidence 3446777777 47999999999998887775 2344444444 1 12233332
Q ss_pred ---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEE
Q psy3710 117 ---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIAL 193 (424)
Q Consensus 117 ---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 193 (424)
.|.|.+|+.. .++....+....+...+.++.++.+-..|.+ ++.|+.+..|+.... +....+...+..+.+++.
T Consensus 76 gt~~g~v~~ys~~-~g~it~~~st~~h~~~v~~~~~~~~~~ciyS-~~ad~~v~~~~~~~~-~~~~~~~~~~~~~~sl~i 152 (541)
T KOG4547|consen 76 GTPQGSVLLYSVA-GGEITAKLSTDKHYGNVNEILDAQRLGCIYS-VGADLKVVYILEKEK-VIIRIWKEQKPLVSSLCI 152 (541)
T ss_pred ecCCccEEEEEec-CCeEEEEEecCCCCCcceeeecccccCceEe-cCCceeEEEEecccc-eeeeeeccCCCccceEEE
Confidence 7899999996 7788888876666677888888877777777 999999999999986 677788888899999999
Q ss_pred ccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeE
Q psy3710 194 NQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLS 273 (424)
Q Consensus 194 ~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 273 (424)
+|||..+++++ +. |++||+++++.+..|+ +|.++|+
T Consensus 153 s~D~~~l~~as--~~-ik~~~~~~kevv~~ft-----------------------------------------gh~s~v~ 188 (541)
T KOG4547|consen 153 SPDGKILLTAS--RQ-IKVLDIETKEVVITFT-----------------------------------------GHGSPVR 188 (541)
T ss_pred cCCCCEEEecc--ce-EEEEEccCceEEEEec-----------------------------------------CCCcceE
Confidence 99999999887 45 9999999999887776 7888888
Q ss_pred EEEEcCC-----CCEEEEEe-CCCcEEEEEECCC
Q psy3710 274 CIALNQT-----GTRLATAS-YKGTLIRVFDTGS 301 (424)
Q Consensus 274 ~~~~~~~-----~~~l~~~~-~d~~~i~iwd~~~ 301 (424)
+++|-.+ |.+++++. .+.. +.+|-+..
T Consensus 189 t~~f~~~~~g~~G~~vLssa~~~r~-i~~w~v~~ 221 (541)
T KOG4547|consen 189 TLSFTTLIDGIIGKYVLSSAAAERG-ITVWVVEK 221 (541)
T ss_pred EEEEEEeccccccceeeeccccccc-eeEEEEEc
Confidence 8888765 56655543 3444 77776654
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.2e-11 Score=98.28 Aligned_cols=238 Identities=16% Similarity=0.199 Sum_probs=154.8
Q ss_pred eeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCC----CCcccccc------------cCCeEEEEEccCC--CEEEEEe
Q psy3710 143 GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER----PPLDIAAH------------EAPLSCIALNQTG--TRLATAS 204 (424)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~----~~~~~~~~------------~~~v~~~~~~~~~--~~l~~~~ 204 (424)
-+.++.|...|.+|++ |..+|.|.++.-....+ ....++.| ...|..+.|.+++ ..++..+
T Consensus 27 iis~vef~~~Ge~Lat-GdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 27 IISAVEFDHYGERLAT-GDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred ceeeEEeecccceEee-cCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 3678889999999998 99999999997654322 12234444 3468889998865 4677778
Q ss_pred cCCcEEEEEECCCcceee---------------EEe------------------------cceeeeeecCCCCeEEEEee
Q psy3710 205 YKGTLIRVFDTGSGQKLN---------------ELR------------------------RGLCVLCPNSNNSLLAFPGR 245 (424)
Q Consensus 205 ~d~~~i~iwd~~~~~~~~---------------~~~------------------------~~~~~~~~~~~~~~~~~~~~ 245 (424)
.|.+ |++|.+....... .++ -++..++++.+.+.++ ..
T Consensus 106 Ndkt-iKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l--SA 182 (433)
T KOG1354|consen 106 NDKT-IKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL--SA 182 (433)
T ss_pred CCcc-eeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe--ec
Confidence 8999 9999875431110 000 1245566677777665 67
Q ss_pred cCCeEEEEeCCCCCCCCe--eec-----cCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEECCCCceee-----------
Q psy3710 246 KSGHVHLVDLADPERPPL--DIA-----AHEAPLSCIALNQT-GTRLATASYKGTLIRVFDTGSGQKLN----------- 306 (424)
Q Consensus 246 ~dg~i~i~d~~~~~~~~~--~~~-----~~~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd~~~~~~~~----------- 306 (424)
+|=.|.+|++.-...... .++ .-..-|++..|+|. .+.++..+..|+ |++-|++...+-.
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt-IrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT-IRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc-EEEeechhhhhhcchhhhhccccC
Confidence 888999999875442211 112 22346889999994 568888889999 9999998532211
Q ss_pred -----------------eeccCCcEEEEEeCCCcEEEEEcc-ccccccccccceeeec--cCccccCCceeeEEeecCCC
Q psy3710 307 -----------------ELRRDSSYLCVSSDHGTVHVFSVD-EAQKINKQSSLASASF--LPKYFSSSWSFCKFQIPSDP 366 (424)
Q Consensus 307 -----------------~~~~~~~~l~~~~~d~~i~iw~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 366 (424)
.|+++|+++++-.. -+|++||+. ..+++.....+....- ...+. ..-.+.
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYE-nD~Ifd-------- 331 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYE-NDAIFD-------- 331 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhh-ccchhh--------
Confidence 25678999987643 589999994 3344333222211100 00000 000011
Q ss_pred ceEEEEecCCCeEEEEeccCcEEEEEecC
Q psy3710 367 PCICAFGADSNSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 367 ~~~~~~s~~~~~l~~~~~dg~v~~~~~~~ 395 (424)
--.|+|+-++.++++|+....+++|++..
T Consensus 332 KFec~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 332 KFECSWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred eeEEEEcCCcceEecccccceEEEecCCC
Confidence 12468999999999999999999999654
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.4e-12 Score=122.37 Aligned_cols=188 Identities=15% Similarity=0.245 Sum_probs=144.1
Q ss_pred eEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccc-cccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceee
Q psy3710 144 LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA-AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN 222 (424)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~ 222 (424)
+.++.-+|...+.++ |+.||.+++|....+ +.+..++ +-+..|+.+.|+.+|+.+..+..||. +.+|... .++..
T Consensus 2211 v~r~~sHp~~~~Ylt-gs~dgsv~~~~w~~~-~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~-l~l~q~~-pk~~~ 2286 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLT-GSQDGSVRMFEWGHG-QQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGD-LSLWQAS-PKPYT 2286 (2439)
T ss_pred eeeecCCCCCceEEe-cCCCceEEEEeccCC-CeEEEeeccCcchhhhhhhcccCCceeeeccCCc-eeecccC-Cccee
Confidence 556777888888887 999999999999876 4444333 33488999999999999999999999 9999986 44444
Q ss_pred EEecc---eeeeeecCCCCeEEEE--eecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy3710 223 ELRRG---LCVLCPNSNNSLLAFP--GRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVF 297 (424)
Q Consensus 223 ~~~~~---~~~~~~~~~~~~~~~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iw 297 (424)
..+.+ ..-+.|-. ..++-+ .+.++.+.+||...+......-..|.+.++++++.|..+.|++|+.+|. |++|
T Consensus 2287 s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~-v~l~ 2363 (2439)
T KOG1064|consen 2287 SWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGE-VCLF 2363 (2439)
T ss_pred ccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCc-EEEe
Confidence 44433 11122211 222222 3467899999987655433333699999999999999999999999999 9999
Q ss_pred ECCCCceeeeecc--CCcEEEEEeCCCcEEEEEcccccccccc
Q psy3710 298 DTGSGQKLNELRR--DSSYLCVSSDHGTVHVFSVDEAQKINKQ 338 (424)
Q Consensus 298 d~~~~~~~~~~~~--~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 338 (424)
|++..++++.|.. ...++++|+..|.++||++.....+...
T Consensus 2364 D~rqrql~h~~~~~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2364 DIRQRQLRHTFQALDTREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred ehHHHHHHHHhhhhhhhheeeccCcccceEEEEccccchhhcC
Confidence 9999888887653 5678999999999999999987665543
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=110.26 Aligned_cols=281 Identities=12% Similarity=0.134 Sum_probs=191.0
Q ss_pred cCCceEEEEECCCCCeeEeecCCeEEEEeCCcCccccc--ccccCCCeeeEEEeccCc--eEEEEeCCcCCCcCCCeEEE
Q psy3710 9 YKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKER--QDFTDGGLGHVEMLFRCN--YLALVGGGTHPKYPNNRVMI 84 (424)
Q Consensus 9 h~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~--~l~~~~~~~~~~~~d~~i~i 84 (424)
-.+++.++..+|.|+-+|.++..|+.+-|++..-...+ .....-.+..+.|++... +-++.. +...-.+
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVst-------s~qkaii 95 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVST-------SNQKAII 95 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEec-------Ccchhhh
Confidence 35678889999999999999999988888765433222 222344677888988763 333333 2467788
Q ss_pred EECCCC--cEEEEEe--ecCCeEEEEecCCce-EEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeE
Q psy3710 85 WDDLKK--QVVICLE--FNAPVKGVRLRRDKI-VVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLL 156 (424)
Q Consensus 85 wd~~~~--~~~~~~~--~~~~v~~~~~~~~~~-~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (424)
|++... +.+.-+. |...|..+.|+|... ++++ |..+..||++....++.....-... ...+.|+-....+
T Consensus 96 wnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~--asqVkwnyk~p~v 173 (1081)
T KOG0309|consen 96 WNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA--ASQVKWNYKDPNV 173 (1081)
T ss_pred hhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccccc--CceeeecccCcch
Confidence 987532 2232222 688999999998763 3333 8999999998666666665544322 4456776655555
Q ss_pred EEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccC-CCEEEEEecCCcEEEEEECCCcce--eeEEe--cceeee
Q psy3710 157 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT-GTRLATASYKGTLIRVFDTGSGQK--LNELR--RGLCVL 231 (424)
Q Consensus 157 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd~~~~~~--~~~~~--~~~~~~ 231 (424)
.+ .+....|++||++.+..++..+++|...|..++|..- -..+.+++.|++ |+.||...... .+... .++..-
T Consensus 174 la-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~kSt~e~~~~vtt~~piw~~ 251 (1081)
T KOG0309|consen 174 LA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSKSTTESKRTVTTNFPIWRG 251 (1081)
T ss_pred hh-hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeecccccccccceeccccCcceec
Confidence 55 6788899999999988888999999999999999763 346889999999 99999875432 22222 223333
Q ss_pred eecCCCCeEEEEe----------ecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCC----------CEEEEEeCCC
Q psy3710 232 CPNSNNSLLAFPG----------RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTG----------TRLATASYKG 291 (424)
Q Consensus 232 ~~~~~~~~~~~~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~d~ 291 (424)
++.|-+.-.++.- .-++....|+..+...++..+.+|...|....|-..+ -.|+|=+.|.
T Consensus 252 r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~ 331 (1081)
T KOG0309|consen 252 RYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQ 331 (1081)
T ss_pred cccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCC
Confidence 4445444333211 1222333455555567788899999998777664321 2689999999
Q ss_pred cEEEEEECCC
Q psy3710 292 TLIRVFDTGS 301 (424)
Q Consensus 292 ~~i~iwd~~~ 301 (424)
. +|+|-+.+
T Consensus 332 ~-lrlWpI~~ 340 (1081)
T KOG0309|consen 332 T-LRLWPIDS 340 (1081)
T ss_pred c-eEeeeccH
Confidence 9 99998764
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.5e-10 Score=101.25 Aligned_cols=374 Identities=11% Similarity=0.084 Sum_probs=235.9
Q ss_pred cCCceEEEEECCCCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccC----------ceEEEEeCCcCCCcC
Q psy3710 9 YKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRC----------NYLALVGGGTHPKYP 78 (424)
Q Consensus 9 h~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~l~~~~~~~~~~~~ 78 (424)
|...-.++.|+|.| ++|.|+..-|.+-|..+.+.+...+.|...|..+.|+|-. ..+..++++ -
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD-----~ 87 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD-----I 87 (1062)
T ss_pred CcccccccccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecc-----c
Confidence 33446778899888 7889998889999999999998899999999999998743 234445544 3
Q ss_pred CCeEEEEECCCCcEEEEEe-ecCCeEEEEecCC---c-e-EEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeec
Q psy3710 79 NNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRD---K-I-VVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPN 150 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~---~-~-~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (424)
.|.|.+||...+..+..++ +..++..++|-+. . . +++. ...+.+|+.. +++........... ..++.+.
T Consensus 88 ~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd-tG~k~Wk~~ys~~i--Ls~f~~D 164 (1062)
T KOG1912|consen 88 SGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD-TGEKFWKYDYSHEI--LSCFRVD 164 (1062)
T ss_pred cCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc-CCceeeccccCCcc--eeeeeeC
Confidence 6999999999999998888 5778888888543 2 2 2332 7799999986 77777766554433 4456666
Q ss_pred CC-CCeEEEeeccCCeEEEEeCCCCC---CCCccc---ccccC----------------C---------eEEEEEccCCC
Q psy3710 151 SN-NSLLAFPGRKSGHVHLVDLADPE---RPPLDI---AAHEA----------------P---------LSCIALNQTGT 198 (424)
Q Consensus 151 ~~-~~~l~~~~~~dg~i~i~d~~~~~---~~~~~~---~~~~~----------------~---------v~~~~~~~~~~ 198 (424)
|- .+.+.+ -+..|.+.+-+.-... .+.+.+ ..|.+ . ...++|+|.-+
T Consensus 165 Pfd~rh~~~-l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~r 243 (1062)
T KOG1912|consen 165 PFDSRHFCV-LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWR 243 (1062)
T ss_pred CCCcceEEE-EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhh
Confidence 53 334444 4555666665543211 111111 11111 0 12356677666
Q ss_pred EEEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecCCCC-eEEEEeecCCeEEEEeCCCCCCCCee----ec----
Q psy3710 199 RLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNS-LLAFPGRKSGHVHLVDLADPERPPLD----IA---- 266 (424)
Q Consensus 199 ~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~dg~i~i~d~~~~~~~~~~----~~---- 266 (424)
.++....... +.++|++-..++....-+ ...+.+-|+.+ ..+++.-.||.+.+|-.+........ +.
T Consensus 244 n~lfi~~pre-llv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~ 322 (1062)
T KOG1912|consen 244 NILFITFPRE-LLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLG 322 (1062)
T ss_pred ceEEEEeccc-eEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccc
Confidence 5665666677 999999888877766533 55677777643 46667999999999987653211110 00
Q ss_pred --------cCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEECCCCceeee----------------------------ec
Q psy3710 267 --------AHEAPLSCIALNQT-GTRLATASYKGTLIRVFDTGSGQKLNE----------------------------LR 309 (424)
Q Consensus 267 --------~~~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd~~~~~~~~~----------------------------~~ 309 (424)
-.+..+...+..|. ...++.--.+|. ..+|.+++|+.-.. ++
T Consensus 323 ~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~-~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS 401 (1062)
T KOG1912|consen 323 EQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGD-STFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLS 401 (1062)
T ss_pred cceEEEeechhcccceeecCCCChhhhhhhhhcch-hHHHhhhcCCcCcccccccccccccccccCceeehhhccccchh
Confidence 01112222233343 334444445666 78888886543221 01
Q ss_pred --------------------------cCC-------cEEEEEeCCCcEEEEEccccccccccccc----eeeeccCc---
Q psy3710 310 --------------------------RDS-------SYLCVSSDHGTVHVFSVDEAQKINKQSSL----ASASFLPK--- 349 (424)
Q Consensus 310 --------------------------~~~-------~~l~~~~~d~~i~iw~~~~~~~~~~~~~~----~~~~~~~~--- 349 (424)
|.+ .++|.|...|+|.++|+.++..-.....+ ++..+...
T Consensus 402 ~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ssl 481 (1062)
T KOG1912|consen 402 DDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSL 481 (1062)
T ss_pred hcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeE
Confidence 111 36788999999999999997654433322 22222221
Q ss_pred ------cccC---C---ce-e--------eEEe----ecCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 350 ------YFSS---S---WS-F--------CKFQ----IPSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 350 ------~~~~---~---~~-~--------~~~~----~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
+... . .. + ..|+ -...+|+.+..|.-++||++.-.|.-+.+|++.
T Consensus 482 vSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~k 551 (1062)
T KOG1912|consen 482 VSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLK 551 (1062)
T ss_pred EEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhc
Confidence 0000 0 00 0 0122 235689999999999999999999999999996
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.8e-09 Score=96.03 Aligned_cols=290 Identities=12% Similarity=0.058 Sum_probs=168.6
Q ss_pred CCeeEeecCCe-EEEEeCCcCcccccccccCC--C-------eeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCc
Q psy3710 22 QGCFACGMEDG-FRIYNCDPLKEKERQDFTDG--G-------LGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ 91 (424)
Q Consensus 22 g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~--~-------i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~ 91 (424)
+..+.+++.++ +.-+|.++++.+........ . ...-.....++.++..+ .++.+..+|.++|+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~-------~~g~l~ald~~tG~ 141 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS-------EKGQVYALNAEDGE 141 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEc-------CCCEEEEEECCCCC
Confidence 44566666666 88889888887655443220 0 00001112344454444 36899999999999
Q ss_pred EEEEEeecCCeEE-EEecCCceEEEe-eccEEEEeecCCCceeEEEeeCCCCCe---eEEEeecCCCCeEEEeeccCCeE
Q psy3710 92 VVICLEFNAPVKG-VRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNPKG---LCVLCPNSNNSLLAFPGRKSGHV 166 (424)
Q Consensus 92 ~~~~~~~~~~v~~-~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~dg~i 166 (424)
.+.+......+.+ ..+..+..++.. ++.+..+|.+ +++.+........... ...... .+..+++ +..+|.+
T Consensus 142 ~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~-tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~-~~~~g~v 217 (394)
T PRK11138 142 VAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNES-DGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIV-GGDNGRV 217 (394)
T ss_pred CcccccCCCceecCCEEECCEEEEECCCCEEEEEEcc-CCCEeeeecCCCCcccccCCCCCEE--ECCEEEE-EcCCCEE
Confidence 9988875554433 222333333333 7889999986 7777776654311100 001111 1234555 7888999
Q ss_pred EEEeCCCCCCCCccccccc----C---CeEEEEEcc--CCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCC
Q psy3710 167 HLVDLADPERPPLDIAAHE----A---PLSCIALNQ--TGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNN 237 (424)
Q Consensus 167 ~i~d~~~~~~~~~~~~~~~----~---~v~~~~~~~--~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 237 (424)
..+|..++ +......... . ....+.-+| .+..++.++.++. +..+|..+++.+...+.... ......+
T Consensus 218 ~a~d~~~G-~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~~~-~~~~~~~ 294 (394)
T PRK11138 218 SAVLMEQG-QLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN-LVALDLRSGQIVWKREYGSV-NDFAVDG 294 (394)
T ss_pred EEEEccCC-hhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe-EEEEECCCCCEEEeecCCCc-cCcEEEC
Confidence 99998876 3332221100 0 011111122 2456777788898 99999999987765542211 0111234
Q ss_pred CeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeecc-------
Q psy3710 238 SLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR------- 310 (424)
Q Consensus 238 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~------- 310 (424)
..+++ ++.+|.++.+|..+++..-..-........+... .+.+|+.++.+|. +.+.|..+|+.+.+..-
T Consensus 295 ~~vy~-~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~-l~~ld~~tG~~~~~~~~~~~~~~s 370 (394)
T PRK11138 295 GRIYL-VDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGY-LHWINREDGRFVAQQKVDSSGFLS 370 (394)
T ss_pred CEEEE-EcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCE-EEEEECCCCCEEEEEEcCCCccee
Confidence 44444 7789999999998876322111001111222222 2457888999999 99999999998877542
Q ss_pred ----CCcEEEEEeCCCcEEEEEc
Q psy3710 311 ----DSSYLCVSSDHGTVHVFSV 329 (424)
Q Consensus 311 ----~~~~l~~~~~d~~i~iw~~ 329 (424)
.+..|+.++.||.|+.+++
T Consensus 371 ~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 371 EPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEECCEEEEEeCCceEEEEeC
Confidence 2346777788888877764
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-10 Score=91.35 Aligned_cols=227 Identities=15% Similarity=0.201 Sum_probs=137.6
Q ss_pred ceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEE------
Q psy3710 130 QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATA------ 203 (424)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------ 203 (424)
.+.+.+..+..+...... +--+..+++ ++.||.+.+++.+...+....+..-...-.+.+....++.+.++
T Consensus 80 ~~~~~~a~~sep~p~~~~--s~~~t~V~~-~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n 156 (319)
T KOG4714|consen 80 DPFKVLAKNSEIDPNDAC--TMTDNRVCI-GYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWN 156 (319)
T ss_pred CceeeeeccCCCCCcccc--cccCCceEe-cCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEe
Confidence 344455544443322222 223556777 99999999999875322222222111111222333344444433
Q ss_pred ecCCcEEEEEECCCcceeeEE---ecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcC-
Q psy3710 204 SYKGTLIRVFDTGSGQKLNEL---RRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ- 279 (424)
Q Consensus 204 ~~d~~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~- 279 (424)
..|. .++|+++..+....- ...+..+|.+|..+.++++|+.||.+-+||.++...+...+..|+.++..+.|+|
T Consensus 157 ~~d~--~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk 234 (319)
T KOG4714|consen 157 AQDN--FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK 234 (319)
T ss_pred eccc--eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC
Confidence 2222 566666543222111 1227788999999999999999999999999998888888899999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEECCCCceeeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeE
Q psy3710 280 TGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCK 359 (424)
Q Consensus 280 ~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (424)
++..|+++++||. +.-||..+ ..|..+.....+..|=-.+ +.+..-.+. ..+|
T Consensus 235 ~p~~Lft~sedGs-lw~wdas~-----------~~l~i~~~~s~~s~WLsgD--~v~s~i~i~--~ll~----------- 287 (319)
T KOG4714|consen 235 NPEHLFTCSEDGS-LWHWDAST-----------TFLSISNQASVISSWLSGD--PVKSRIEIT--SLLP----------- 287 (319)
T ss_pred CchheeEecCCCc-EEEEcCCC-----------ceEEecCccccccccccCC--cccceEeee--cccc-----------
Confidence 6789999999999 99999875 2333333333444553222 111100000 0111
Q ss_pred EeecCCCceEEEEecCCCeEEEEeccCcEEEEE
Q psy3710 360 FQIPSDPPCICAFGADSNSIIVICADGSYYKFM 392 (424)
Q Consensus 360 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~ 392 (424)
......-.|.--|..|++|++-+.|++++
T Consensus 288 ----~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 288 ----SRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ----ccceeeeeeeccCceEEeccccceEEEec
Confidence 11122335667788999999999999876
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.3e-10 Score=88.27 Aligned_cols=218 Identities=11% Similarity=0.075 Sum_probs=146.7
Q ss_pred CeEEEEECCCCcEEE--EEe--ecCCeEEEEec---CCce-EEE---eeccEEEEeecCCCceeEEEeeC---CCCC-ee
Q psy3710 80 NRVMIWDDLKKQVVI--CLE--FNAPVKGVRLR---RDKI-VVV---LEGLIKVYTFIQCPQQLHVFETN---PNPK-GL 144 (424)
Q Consensus 80 ~~i~iwd~~~~~~~~--~~~--~~~~v~~~~~~---~~~~-~~~---~~~~i~v~~~~~~~~~~~~~~~~---~~~~-~~ 144 (424)
|.+.+++++..+... +++ -...+..+.|. -++. .++ +.|.|.+|... .......+++- .-.. ..
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~-~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRND-EDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeec-cceeeeeecccchhhhhheee
Confidence 677888876655443 222 24556666664 2233 222 17899999875 22222222221 1111 24
Q ss_pred EEEeecCCCCeEEEeeccCCeEEEEeCCCC-CCCCcccccccCCeEEEEEcc-CCCEEEEEecCCcEEEEEECCC-ccee
Q psy3710 145 CVLCPNSNNSLLAFPGRKSGHVHLVDLADP-ERPPLDIAAHEAPLSCIALNQ-TGTRLATASYKGTLIRVFDTGS-GQKL 221 (424)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~~i~iwd~~~-~~~~ 221 (424)
.++.|++.+..+++ +..+|.+.+-+.... -+.++.++.|.-+.....|+. +.+.+++|+.|+. +..||++. ++.+
T Consensus 125 lslD~~~~~~~i~v-s~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 125 LSLDISTSGTKIFV-SDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIPKTFI 202 (339)
T ss_pred eEEEeeccCceEEE-EcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCCccee
Confidence 57788888988888 888999885444332 234457889999999999976 4468899999999 99999993 3333
Q ss_pred eE----EecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCC--CCEEEEEeCCCcEEE
Q psy3710 222 NE----LRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT--GTRLATASYKGTLIR 295 (424)
Q Consensus 222 ~~----~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~~i~ 295 (424)
.. -..++.++..+|..+..+++|+.|-.|++||.++..+++..- .-.+.|..+.++|. ++.|+++-.+| .+
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G--~k 279 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNG--AK 279 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcC--ce
Confidence 22 223467777788888899999999999999999877665543 33488999999994 34566666666 68
Q ss_pred EEECCCCc
Q psy3710 296 VFDTGSGQ 303 (424)
Q Consensus 296 iwd~~~~~ 303 (424)
|-+...+.
T Consensus 280 i~~~~~~~ 287 (339)
T KOG0280|consen 280 ILDSSDKV 287 (339)
T ss_pred EEEecccc
Confidence 88776543
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-09 Score=84.88 Aligned_cols=199 Identities=12% Similarity=0.084 Sum_probs=131.4
Q ss_pred EEECCC-----CCeeEeecCCe-EEEEeCCcCcc-cccccccCCCeeeEEEeccCc-eEEEEeCCcCCCcCCCeEEEEEC
Q psy3710 16 AGFNQD-----QGCFACGMEDG-FRIYNCDPLKE-KERQDFTDGGLGHVEMLFRCN-YLALVGGGTHPKYPNNRVMIWDD 87 (424)
Q Consensus 16 ~~~s~~-----g~~la~g~~~~-i~iw~~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~~~~~d~~i~iwd~ 87 (424)
+.|.|. ..+||.|+..| +.+|.+.+.+. ......+...|+.+.-.-+.+ .+..++ .|.++++.++
T Consensus 73 ~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~s-------ndht~k~~~~ 145 (344)
T KOG4532|consen 73 MTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIAS-------NDHTGKTMVV 145 (344)
T ss_pred ccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeecc-------CCcceeEEEE
Confidence 455553 35788887777 99999887655 222333333333332222222 334444 5889999987
Q ss_pred CCCcEEEEEeec--CCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeecc
Q psy3710 88 LKKQVVICLEFN--APVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRK 162 (424)
Q Consensus 88 ~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (424)
+-+.... ..|. -.+.++++++|+.+.++ ...|..|.+....+.+...........-.+.+|+.....+|+ +..
T Consensus 146 ~~~s~~~-~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv-~~Q 223 (344)
T KOG4532|consen 146 SGDSNKF-AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAV-VFQ 223 (344)
T ss_pred ecCcccc-eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEE-Eec
Confidence 5443333 3332 34889999999988887 568889998755555544444444444567788888888888 999
Q ss_pred CCeEEEEeCCCCCCCCc----ccccccCCeEEEEEccCCC--EEEEEecCCcEEEEEECCCcceeeEE
Q psy3710 163 SGHVHLVDLADPERPPL----DIAAHEAPLSCIALNQTGT--RLATASYKGTLIRVFDTGSGQKLNEL 224 (424)
Q Consensus 163 dg~i~i~d~~~~~~~~~----~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~~i~iwd~~~~~~~~~~ 224 (424)
||++.|||++....+.. +-..|++.++.+.|++.|. +|...-.-+. +.+.|+++++..+.+
T Consensus 224 dg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~-~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 224 DGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSR-VHVVDTRNYVNHQVI 290 (344)
T ss_pred CCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcce-EEEEEcccCceeeEE
Confidence 99999999997643333 2235899999999998653 4444444455 899999988765544
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=93.40 Aligned_cols=282 Identities=12% Similarity=0.138 Sum_probs=163.7
Q ss_pred cCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcc-----ccccccc------------CCCeeeEEEeccCc--eEEE
Q psy3710 9 YKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKE-----KERQDFT------------DGGLGHVEMLFRCN--YLAL 68 (424)
Q Consensus 9 h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~-----~~~~~~~------------~~~i~~~~~~~~~~--~l~~ 68 (424)
..+-|+++.|...|.+||+|..+| |.+|.-+.... ....+.| ...|..+.|..++. .+++
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 456799999999999999999999 99997554331 1111111 34677888887653 3444
Q ss_pred EeCCcCCCcCCCeEEEEECCCCcE--EEEEeecCCeEEEEecCCceEEEeeccEEEEeecCCCcee----EEEeeCCCCC
Q psy3710 69 VGGGTHPKYPNNRVMIWDDLKKQV--VICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQL----HVFETNPNPK 142 (424)
Q Consensus 69 ~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~----~~~~~~~~~~ 142 (424)
.+ .|++|++|.+..... +.+-.....+. + |-+--+.+-..+++=.+....+.+ ..+....++.
T Consensus 105 st-------NdktiKlWKiyeknlk~va~nnls~~~~---~-~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~y 173 (460)
T COG5170 105 ST-------NDKTIKLWKIYEKNLKVVAENNLSDSFH---S-PMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPY 173 (460)
T ss_pred ec-------CCceeeeeeeecccchhhhccccccccc---c-ccCCCcCCHHHhhcccccccceEEEeccceecccccee
Confidence 44 589999998754322 11111111111 1 111011111111111111111111 1122234456
Q ss_pred eeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCc--ccccc-----cCCeEEEEEccC-CCEEEEEecCCcEEEEEE
Q psy3710 143 GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL--DIAAH-----EAPLSCIALNQT-GTRLATASYKGTLIRVFD 214 (424)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~--~~~~~-----~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd 214 (424)
.+.+++++.|...+++ +.|-.|.+|++........ -++.| ..-|++..|+|. ...+...+..|. |++-|
T Consensus 174 hiNSiS~NsD~et~lS--aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~-Ikl~D 250 (460)
T COG5170 174 HINSISFNSDKETLLS--ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE-IKLND 250 (460)
T ss_pred EeeeeeecCchheeee--ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc-EEehh
Confidence 6888999999988884 7788999999875433222 22233 345788899995 356666777888 99999
Q ss_pred CCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q psy3710 215 TGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLI 294 (424)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i 294 (424)
++....-. ..-+++...-...-...+.+-...|..+.|+++|+++++-+.-. +
T Consensus 251 lRq~alcd-------------------------n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdylt--v 303 (460)
T COG5170 251 LRQSALCD-------------------------NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLT--V 303 (460)
T ss_pred hhhhhhcc-------------------------CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccce--E
Confidence 98543210 00001111000111112224456789999999999998876654 9
Q ss_pred EEEECCCCc-eeee---------------------------eccCCcEEEEEeCCCcEEEEEccc
Q psy3710 295 RVFDTGSGQ-KLNE---------------------------LRRDSSYLCVSSDHGTVHVFSVDE 331 (424)
Q Consensus 295 ~iwd~~~~~-~~~~---------------------------~~~~~~~l~~~~~d~~i~iw~~~~ 331 (424)
++||.+..+ ++.+ |+.|.+.+.+|+..+..-||-..+
T Consensus 304 kiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 304 KIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred EEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 999997643 3333 456778888888877777776544
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-08 Score=101.47 Aligned_cols=236 Identities=14% Similarity=0.100 Sum_probs=149.1
Q ss_pred EEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCccccc--------------ccCCeEEEEEccCCCEEEEEec-CCcEE
Q psy3710 146 VLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAA--------------HEAPLSCIALNQTGTRLATASY-KGTLI 210 (424)
Q Consensus 146 ~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~-d~~~i 210 (424)
.+++++.+..++++-..++.|.++|.... ....+.. .-.....++++++++.|+.+.. .+. |
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~--~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~-I 648 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGN--FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA-L 648 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCC--EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce-E
Confidence 35666654444444778899999998642 2222211 1123578999998887766654 455 9
Q ss_pred EEEECCCcceeeEEec--------------------ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCe-------
Q psy3710 211 RVFDTGSGQKLNELRR--------------------GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL------- 263 (424)
Q Consensus 211 ~iwd~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~------- 263 (424)
+.+|..++.. .++.+ ....++++|++..++++...++.|++||..++.....
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999877643 22211 1245788888888888888999999999876532100
Q ss_pred eecc------CCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEECCCCceee------------------------------
Q psy3710 264 DIAA------HEAPLSCIALNQTGTRLATAS-YKGTLIRVFDTGSGQKLN------------------------------ 306 (424)
Q Consensus 264 ~~~~------~~~~v~~~~~~~~~~~l~~~~-~d~~~i~iwd~~~~~~~~------------------------------ 306 (424)
...+ .-.....++++|+++.|+.+. .++. |++||+.++....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~-Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS-IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCe-EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 0001 113456799999998665554 4566 9999998654210
Q ss_pred ---eeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEe
Q psy3710 307 ---ELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVIC 383 (424)
Q Consensus 307 ---~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 383 (424)
.+.++|.++++-+.++.|++||..++..... ..... +.+.++.. ....-.....++++++|+.+++-+
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ti-aG~G~----~G~~dG~~----~~a~l~~P~GIavd~dG~lyVaDt 877 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTL-AGTGK----AGFKDGKA----LKAQLSEPAGLALGENGRLFVADT 877 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEE-eccCC----cCCCCCcc----cccccCCceEEEEeCCCCEEEEEC
Confidence 1346788888888899999999987654321 11000 00000000 011112456889999999878778
Q ss_pred ccCcEEEEEecC
Q psy3710 384 ADGSYYKFMFNS 395 (424)
Q Consensus 384 ~dg~v~~~~~~~ 395 (424)
.++.|++|++..
T Consensus 878 ~Nn~Irvid~~~ 889 (1057)
T PLN02919 878 NNSLIRYLDLNK 889 (1057)
T ss_pred CCCEEEEEECCC
Confidence 899999999974
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.6e-10 Score=97.60 Aligned_cols=186 Identities=12% Similarity=0.176 Sum_probs=136.1
Q ss_pred CCCCCeeEeecCCe-EEEEeCCcCcccccccc---cCCCeeeEEEec------------------cCceEEEEeCCcCCC
Q psy3710 19 NQDQGCFACGMEDG-FRIYNCDPLKEKERQDF---TDGGLGHVEMLF------------------RCNYLALVGGGTHPK 76 (424)
Q Consensus 19 s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~---~~~~i~~~~~~~------------------~~~~l~~~~~~~~~~ 76 (424)
.|-+.++|....+| ++||+...++....... -.+...+..|.- .++..+.+-|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt---- 77 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT---- 77 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec----
Confidence 35568899888888 99999988776433221 234444455531 11122222222
Q ss_pred cCCCeEEEEECCCCcEEEEEe---ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeec
Q psy3710 77 YPNNRVMIWDDLKKQVVICLE---FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPN 150 (424)
Q Consensus 77 ~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (424)
..|.|.+++...|+....+. |.+.|.++.++.+-.++.+ |..+..|+.. ..+.+...+... ..+..++++
T Consensus 78 -~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~-~~~~~~~~~~~~--~~~~sl~is 153 (541)
T KOG4547|consen 78 -PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK-EKVIIRIWKEQK--PLVSSLCIS 153 (541)
T ss_pred -CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecc-cceeeeeeccCC--CccceEEEc
Confidence 46999999999999998887 7899999999888766655 8899999986 667777666655 447788999
Q ss_pred CCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccC-----CCEEEEEe-cCCcEEEEEECCC
Q psy3710 151 SNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT-----GTRLATAS-YKGTLIRVFDTGS 217 (424)
Q Consensus 151 ~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~-~d~~~i~iwd~~~ 217 (424)
||+..+++ ++ +.|.+||+++. +.+..|.+|.++|+++.|..+ |.+++++. .+.. +.+|-.+.
T Consensus 154 ~D~~~l~~-as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~-i~~w~v~~ 221 (541)
T KOG4547|consen 154 PDGKILLT-AS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG-ITVWVVEK 221 (541)
T ss_pred CCCCEEEe-cc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEeccccccceeeeccccccc-eeEEEEEc
Confidence 99999886 54 69999999996 788899999999999999876 67776654 3344 78886654
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=9e-09 Score=92.38 Aligned_cols=202 Identities=11% Similarity=0.049 Sum_probs=129.0
Q ss_pred CCeEEEEECCCCcEEEEEeecCCeEEEEecCCceE-EEe------eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecC
Q psy3710 79 NNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIV-VVL------EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNS 151 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~------~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (424)
...|.+-|.. |...+.+...+......|+||+.. ++. ...|.++|+. +++...... .. .......|+|
T Consensus 168 ~~~l~~~d~d-g~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~-tg~~~~lt~-~~--g~~~~~~~SP 242 (419)
T PRK04043 168 KSNIVLADYT-LTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLY-TGKKEKIAS-SQ--GMLVVSDVSK 242 (419)
T ss_pred cceEEEECCC-CCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECC-CCcEEEEec-CC--CcEEeeEECC
Confidence 3567776764 443444443447788999999863 442 2468888885 444333222 22 2244567999
Q ss_pred CCCeEEEeeccC--CeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecC-C--cEEEEEECCCcceeeEEec
Q psy3710 152 NNSLLAFPGRKS--GHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK-G--TLIRVFDTGSGQKLNELRR 226 (424)
Q Consensus 152 ~~~~l~~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~~i~iwd~~~~~~~~~~~~ 226 (424)
||+.++.+.+.+ ..|.++|+.++ ....+..+........|+|||+.|+..+.. + . |.+.|+.+++..+....
T Consensus 243 DG~~la~~~~~~g~~~Iy~~dl~~g--~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~-Iy~~dl~~g~~~rlt~~ 319 (419)
T PRK04043 243 DGSKLLLTMAPKGQPDIYLYDTNTK--TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPN-IFMKKLNSGSVEQVVFH 319 (419)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCC--cEEEcccCCCccCccEECCCCCEEEEEECCCCCce-EEEEECCCCCeEeCccC
Confidence 999888745444 46777787764 234444444334466899999988877643 2 4 88889988766433332
Q ss_pred ceeeeeecCCCCeEEEEeecC--------CeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCC
Q psy3710 227 GLCVLCPNSNNSLLAFPGRKS--------GHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKG 291 (424)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 291 (424)
+.....++|+++.++++.... ..|++.|+.++.. ..+... .......|+|||+.++..+.++
T Consensus 320 g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~--~~LT~~-~~~~~p~~SPDG~~I~f~~~~~ 389 (419)
T PRK04043 320 GKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI--RRLTAN-GVNQFPRFSSDGGSIMFIKYLG 389 (419)
T ss_pred CCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe--EECCCC-CCcCCeEECCCCCEEEEEEccC
Confidence 323358999999999977654 3788889887653 222222 2333588999999888776654
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.2e-10 Score=101.66 Aligned_cols=271 Identities=14% Similarity=0.124 Sum_probs=183.5
Q ss_pred CCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC-CcEEEEEee--cCCeEEEEecCCc---eEEEe--eccEEE
Q psy3710 51 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK-KQVVICLEF--NAPVKGVRLRRDK---IVVVL--EGLIKV 122 (424)
Q Consensus 51 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~--~~~v~~~~~~~~~---~~~~~--~~~i~v 122 (424)
.+.+..+.+.|.++-+++++. .-+.+-|+.. +..-+-+.| +-.|-.+.|+|.. ..+++ ...-.+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr--------~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaii 95 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASR--------QGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAII 95 (1081)
T ss_pred cCcccceeeccccchhhhhhh--------cCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhh
Confidence 667888999999999999883 4566666643 333344443 3346677777653 44444 556778
Q ss_pred EeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEE
Q psy3710 123 YTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLAT 202 (424)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 202 (424)
|++.........+-.|.+...++.+.|+|+..-+..+++.|-.+..||+++...++..+..-......++|+.....+.+
T Consensus 96 wnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla 175 (1081)
T KOG0309|consen 96 WNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA 175 (1081)
T ss_pred hhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhh
Confidence 98865554445566666667899999999887776669999999999999987788777777777889999875545555
Q ss_pred EecCCcEEEEEECCCc-ceeeEEeccee---eeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEc
Q psy3710 203 ASYKGTLIRVFDTGSG-QKLNELRRGLC---VLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALN 278 (424)
Q Consensus 203 ~~~d~~~i~iwd~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 278 (424)
.+.... |++||.+.+ .++..+++++. .+.+.......+.+.+.|++|+.||................+|..-.+-
T Consensus 176 sshg~~-i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~ 254 (1081)
T KOG0309|consen 176 SSHGND-IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL 254 (1081)
T ss_pred hccCCc-eEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc
Confidence 556666 999999876 56677777643 3445555555666789999999999987654444333456667766777
Q ss_pred CCCC--EEEEEeCCCcEEEEEECCC----------Cceeeeecc----------------------CCcEEEEEeCCCcE
Q psy3710 279 QTGT--RLATASYKGTLIRVFDTGS----------GQKLNELRR----------------------DSSYLCVSSDHGTV 324 (424)
Q Consensus 279 ~~~~--~l~~~~~d~~~i~iwd~~~----------~~~~~~~~~----------------------~~~~l~~~~~d~~i 324 (424)
|-|. ++.---.+.. +.+++.+. .+.+.+|.. ..-.|++-+.|.++
T Consensus 255 Pfg~g~~~mp~~G~n~-v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~l 333 (1081)
T KOG0309|consen 255 PFGEGYCIMPMVGGNM-VPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTL 333 (1081)
T ss_pred ccCceeEeccccCCee-eeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCce
Confidence 6443 2222111112 44443332 234455532 12369999999999
Q ss_pred EEEEccc
Q psy3710 325 HVFSVDE 331 (424)
Q Consensus 325 ~iw~~~~ 331 (424)
++|-+.+
T Consensus 334 rlWpI~~ 340 (1081)
T KOG0309|consen 334 RLWPIDS 340 (1081)
T ss_pred EeeeccH
Confidence 9999877
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-09 Score=96.60 Aligned_cols=226 Identities=14% Similarity=0.099 Sum_probs=159.3
Q ss_pred CCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcE---------------EEEEe-ecCCeEEEEecCCceEE
Q psy3710 51 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQV---------------VICLE-FNAPVKGVRLRRDKIVV 114 (424)
Q Consensus 51 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~---------------~~~~~-~~~~v~~~~~~~~~~~~ 114 (424)
.....+++|.....+++..+ .||.+++..+.+... -+++. |.+.|.-+.|+.+.+-+
T Consensus 14 nvkL~c~~WNke~gyIAcgG-------~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL 86 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGG-------ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL 86 (1189)
T ss_pred CceEEEEEEcccCCeEEecc-------ccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccc
Confidence 45678899999999998887 689999997754221 12344 78899999999888766
Q ss_pred Ee---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEE
Q psy3710 115 VL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCI 191 (424)
Q Consensus 115 ~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 191 (424)
.+ +|.|.||-+- .+..........+...+.+++|+.||..|+. ...||.|.+=.++....--+.+++ .....+
T Consensus 87 TtSDt~GlIiVWmly-kgsW~EEMiNnRnKSvV~SmsWn~dG~kIcI-vYeDGavIVGsvdGNRIwgKeLkg--~~l~hv 162 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLY-KGSWCEEMINNRNKSVVVSMSWNLDGTKICI-VYEDGAVIVGSVDGNRIWGKELKG--QLLAHV 162 (1189)
T ss_pred cccCCCceEEEEeee-cccHHHHHhhCcCccEEEEEEEcCCCcEEEE-EEccCCEEEEeeccceecchhcch--heccce
Confidence 65 7999999986 4544444444444566889999999999998 999999999888764322233332 223478
Q ss_pred EEccCCCEEEEEecCCcEEEEEECCCcc-------eeeEEec-------ceeeeee--------cCCCCeEEEEeecCCe
Q psy3710 192 ALNQTGTRLATASYKGTLIRVFDTGSGQ-------KLNELRR-------GLCVLCP--------NSNNSLLAFPGRKSGH 249 (424)
Q Consensus 192 ~~~~~~~~l~~~~~d~~~i~iwd~~~~~-------~~~~~~~-------~~~~~~~--------~~~~~~~~~~~~~dg~ 249 (424)
.|++|.+.++.+-..|. +.++|....- +.-...+ .+..+++ -|+.+.+++ +..+|.
T Consensus 163 ~ws~D~~~~Lf~~ange-~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lav-cy~nGr 240 (1189)
T KOG2041|consen 163 LWSEDLEQALFKKANGE-THLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAV-CYANGR 240 (1189)
T ss_pred eecccHHHHHhhhcCCc-EEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEE-EEcCce
Confidence 89999999988888999 9999976431 1111111 1122222 235555555 888999
Q ss_pred EEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCC
Q psy3710 250 VHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKG 291 (424)
Q Consensus 250 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 291 (424)
+.|..-.+...+... .-.-.+....|+++|..||.++.+.
T Consensus 241 ~QiMR~eND~~Pvv~--dtgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 241 MQIMRSENDPEPVVV--DTGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred ehhhhhcCCCCCeEE--ecccEeecceecCCCcEEEEccCcc
Confidence 988776665555443 2336788999999999999998765
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-08 Score=89.93 Aligned_cols=284 Identities=13% Similarity=0.111 Sum_probs=170.3
Q ss_pred cCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCC-----------e-EEEEecCCceEEEe-eccEEEEeecCC
Q psy3710 62 RCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAP-----------V-KGVRLRRDKIVVVL-EGLIKVYTFIQC 128 (424)
Q Consensus 62 ~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----------v-~~~~~~~~~~~~~~-~~~i~v~~~~~~ 128 (424)
.++.+++.+ .++.+.-+|.++|+.+.+...... + ..+....+..++.. ++.+..+|.+ +
T Consensus 68 ~~~~vy~~~-------~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~-t 139 (394)
T PRK11138 68 AYNKVYAAD-------RAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAE-D 139 (394)
T ss_pred ECCEEEEEC-------CCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECC-C
Confidence 355555555 368999999999999887764321 0 11233334444444 7889999986 7
Q ss_pred CceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCe-----EEEEEccCCCEEEEE
Q psy3710 129 PQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPL-----SCIALNQTGTRLATA 203 (424)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~ 203 (424)
++.+...+...... ..... .+..+++ +..+|.+.-+|.+++ +.+-......... .+... .+..++.+
T Consensus 140 G~~~W~~~~~~~~~--ssP~v--~~~~v~v-~~~~g~l~ald~~tG-~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~ 211 (394)
T PRK11138 140 GEVAWQTKVAGEAL--SRPVV--SDGLVLV-HTSNGMLQALNESDG-AVKWTVNLDVPSLTLRGESAPAT--AFGGAIVG 211 (394)
T ss_pred CCCcccccCCCcee--cCCEE--ECCEEEE-ECCCCEEEEEEccCC-CEeeeecCCCCcccccCCCCCEE--ECCEEEEE
Confidence 77777665433211 11111 2345555 778899999999887 4433332211000 01111 12356677
Q ss_pred ecCCcEEEEEECCCcceeeEEecce----------eeeeecC--CCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCC
Q psy3710 204 SYKGTLIRVFDTGSGQKLNELRRGL----------CVLCPNS--NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAP 271 (424)
Q Consensus 204 ~~d~~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 271 (424)
+.++. +..+|..+++.+.+.+... ..+..+| .+..+++ ++.+|.++.+|..+++..-..- ...
T Consensus 212 ~~~g~-v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~-~~~~g~l~ald~~tG~~~W~~~---~~~ 286 (394)
T PRK11138 212 GDNGR-VSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYA-LAYNGNLVALDLRSGQIVWKRE---YGS 286 (394)
T ss_pred cCCCE-EEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEE-EEcCCeEEEEECCCCCEEEeec---CCC
Confidence 78888 9999999988765543210 0011122 2344444 6788999999999886432211 111
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeecc-----------CCcEEEEEeCCCcEEEEEcccccccccccc
Q psy3710 272 LSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR-----------DSSYLCVSSDHGTVHVFSVDEAQKINKQSS 340 (424)
Q Consensus 272 v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-----------~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 340 (424)
...+. ..+..++.++.++. +..+|..+|+.+..... .+..++.++.||.+++.|..+|+.+-+...
T Consensus 287 ~~~~~--~~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 287 VNDFA--VDGGRIYLVDQNDR-VYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred ccCcE--EECCEEEEEcCCCe-EEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 11122 24567888888999 99999999988765421 356778889999999999999876543211
Q ss_pred ceeeeccCccccCCceeeEEeecCCCceE-EEEecCCCeEEEEeccCcEEEEEe
Q psy3710 341 LASASFLPKYFSSSWSFCKFQIPSDPPCI-CAFGADSNSIIVICADGSYYKFMF 393 (424)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~l~~~~~dg~v~~~~~ 393 (424)
..+.+.. -.+ .+..|++++.||.|+.++.
T Consensus 364 ----------------------~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 364 ----------------------DSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ----------------------CCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 1111111 011 3457999999999998874
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.9e-09 Score=102.58 Aligned_cols=225 Identities=9% Similarity=0.093 Sum_probs=148.4
Q ss_pred EEEEecCC-ceEEEe---eccEEEEeecCCCceeEEEeeCCC------------CCeeEEEeecCCCCeEEEeeccCCeE
Q psy3710 103 KGVRLRRD-KIVVVL---EGLIKVYTFIQCPQQLHVFETNPN------------PKGLCVLCPNSNNSLLAFPGRKSGHV 166 (424)
Q Consensus 103 ~~~~~~~~-~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~dg~i 166 (424)
..++++++ +.++++ .+.|+++|.. +..+..+..... -.....+++++++..|+++-..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~--G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD--GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC--CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 35777653 444444 6789999974 444433332100 01134667888888776645567889
Q ss_pred EEEeCCCCCCCCcccccc-----------------cCCeEEEEEcc-CCCEEEEEecCCcEEEEEECCCcceeeEEe---
Q psy3710 167 HLVDLADPERPPLDIAAH-----------------EAPLSCIALNQ-TGTRLATASYKGTLIRVFDTGSGQKLNELR--- 225 (424)
Q Consensus 167 ~i~d~~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~--- 225 (424)
+.+|..++ .+..+.+- -.....++++| ++..+++.+.++. |++||..++.... +.
T Consensus 649 r~id~~~~--~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~-I~v~d~~~g~v~~-~~G~G 724 (1057)
T PLN02919 649 REIDFVNE--TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQ-IWEYNISDGVTRV-FSGDG 724 (1057)
T ss_pred EEEecCCC--EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCe-EEEEECCCCeEEE-EecCC
Confidence 99998763 22222110 12236899999 5556666677788 9999987765421 11
Q ss_pred ---------------cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCe------------eecc--------CCC
Q psy3710 226 ---------------RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL------------DIAA--------HEA 270 (424)
Q Consensus 226 ---------------~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~------------~~~~--------~~~ 270 (424)
.....++++|++..++++...++.|++||+.++..... .+.. .-.
T Consensus 725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 11345788999998888888999999999986542110 0000 111
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceee-------------------------eeccCCcEEEEEeCCCcEE
Q psy3710 271 PLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN-------------------------ELRRDSSYLCVSSDHGTVH 325 (424)
Q Consensus 271 ~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~-------------------------~~~~~~~~l~~~~~d~~i~ 325 (424)
....++++++|+.+++-..++. |++||..++.... .+.++|+++++-+.++.|+
T Consensus 805 ~P~Gvavd~dG~LYVADs~N~r-IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVADSYNHK-IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred CCceeeEeCCCcEEEEECCCCE-EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 3468999999998888888888 9999998765431 2446888888888999999
Q ss_pred EEEcccccc
Q psy3710 326 VFSVDEAQK 334 (424)
Q Consensus 326 iw~~~~~~~ 334 (424)
+||+.+++.
T Consensus 884 vid~~~~~~ 892 (1057)
T PLN02919 884 YLDLNKGEA 892 (1057)
T ss_pred EEECCCCcc
Confidence 999988654
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.9e-11 Score=101.81 Aligned_cols=279 Identities=11% Similarity=0.117 Sum_probs=186.4
Q ss_pred ccccccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCc-------ccccccccCCCeeeEEEeccCceEEEEeCCc
Q psy3710 2 NLGTSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLK-------EKERQDFTDGGLGHVEMLFRCNYLALVGGGT 73 (424)
Q Consensus 2 ~~~~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 73 (424)
++.+..||++.|+.++--.+.+-+++++.|. |++|.+.+.. +...++.|..+|..+.|..+..+++++
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc---- 802 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC---- 802 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec----
Confidence 4556789999999998776777777777777 9999986532 344566689999999999998888766
Q ss_pred CCCcCCCeEEEEECCCCcEEEEEe---ecCCeEEEEecCC---ceEEEe---eccEEEEeecCCCceeEEEeeC--CCC-
Q psy3710 74 HPKYPNNRVMIWDDLKKQVVICLE---FNAPVKGVRLRRD---KIVVVL---EGLIKVYTFIQCPQQLHVFETN--PNP- 141 (424)
Q Consensus 74 ~~~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~---~~~~~~---~~~i~v~~~~~~~~~~~~~~~~--~~~- 141 (424)
|+.|.+||.--|+.+..+. ..+.+..+..-++ ..+++. ..+|+++|.+ ..+....++.. ..|
T Consensus 803 -----D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaR-sce~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 803 -----DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDAR-SCEWTCELKVCNAPGPN 876 (1034)
T ss_pred -----cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecc-cccceeeEEeccCCCCc
Confidence 4889999998888776544 2233333333332 233332 7899999987 55555555443 222
Q ss_pred CeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEE-EECCCcce
Q psy3710 142 KGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRV-FDTGSGQK 220 (424)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~i-wd~~~~~~ 220 (424)
....+++..+.|+++++ |-.+|.|.+.|.+++ +.+..++...-....++ .|..+.++....|.+ +.+ |-.-++..
T Consensus 877 a~~R~iaVa~~GN~lAa-~LSnGci~~LDaR~G-~vINswrpmecdllqla-apsdq~L~~saldHs-laVnWhaldgim 952 (1034)
T KOG4190|consen 877 ALTRAIAVADKGNKLAA-ALSNGCIAILDARNG-KVINSWRPMECDLLQLA-APSDQALAQSALDHS-LAVNWHALDGIM 952 (1034)
T ss_pred hheeEEEeccCcchhhH-HhcCCcEEEEecCCC-ceeccCCcccchhhhhc-CchhHHHHhhcccce-eEeeehhcCCee
Confidence 34668888899999998 999999999999987 55666655544444444 355567777778888 888 88777766
Q ss_pred eeEEecceeeeeec-CCCCeEEEEeecCCeEEEEeCCCCCC---CCeee--ccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q psy3710 221 LNELRRGLCVLCPN-SNNSLLAFPGRKSGHVHLVDLADPER---PPLDI--AAHEAPLSCIALNQTGTRLATASYKGTLI 294 (424)
Q Consensus 221 ~~~~~~~~~~~~~~-~~~~~~~~~~~~dg~i~i~d~~~~~~---~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~~i 294 (424)
..+.+.+.....|- .-|..++. ....+.+.+|--..... .+..+ ....+..++++.-|-+.-++.|...|. |
T Consensus 953 h~q~kpppepahflqsvgpSLV~-a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~-I 1030 (1034)
T KOG4190|consen 953 HLQDKPPPEPAHFLQSVGPSLVT-AQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGA-I 1030 (1034)
T ss_pred eeccCCCCcchhhhhccCceeEE-eccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCc-e
Confidence 65555443322222 23344443 55556666764322110 11111 134566788888887777788888887 7
Q ss_pred EE
Q psy3710 295 RV 296 (424)
Q Consensus 295 ~i 296 (424)
.+
T Consensus 1031 aL 1032 (1034)
T KOG4190|consen 1031 AL 1032 (1034)
T ss_pred ee
Confidence 65
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-08 Score=82.07 Aligned_cols=258 Identities=14% Similarity=0.135 Sum_probs=154.9
Q ss_pred EEEEeCCcCccccc---ccccCCCeeeEEEec---cCce-EEEEeCCcCCCcCCCeEEEEECCCCcEEEEEee------c
Q psy3710 33 FRIYNCDPLKEKER---QDFTDGGLGHVEMLF---RCNY-LALVGGGTHPKYPNNRVMIWDDLKKQVVICLEF------N 99 (424)
Q Consensus 33 i~iw~~~~~~~~~~---~~~~~~~i~~~~~~~---~~~~-l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~------~ 99 (424)
+.+|++...+.... +......+..+.|.. +++. ++.+- .+|.|.++..........++. .
T Consensus 48 l~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~-------a~G~i~~~r~~~~~ss~~L~~ls~~ki~ 120 (339)
T KOG0280|consen 48 LHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAH-------ARGQIQLYRNDEDESSVHLRGLSSKKIS 120 (339)
T ss_pred eEEEeecccccCccceeeeecccccceeeeeeccCCccceeeecc-------ccceEEEEeeccceeeeeecccchhhhh
Confidence 78888876665431 111233455566653 3342 22222 468899887654443333331 1
Q ss_pred -CCeEEEEecCCceEEEe---eccEEEEeecCCC--ceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCC
Q psy3710 100 -APVKGVRLRRDKIVVVL---EGLIKVYTFIQCP--QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLAD 173 (424)
Q Consensus 100 -~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~ 173 (424)
....++.|++.+.-+++ +|.+.+-+.. .. +..+..+.|.-+ +....|+.....++.+|+.|+.+..||++.
T Consensus 121 ~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t-~~~le~vq~wk~He~E--~Wta~f~~~~pnlvytGgDD~~l~~~D~R~ 197 (339)
T KOG0280|consen 121 VVEALSLDISTSGTKIFVSDSRGSISGVYET-EMVLEKVQTWKVHEFE--AWTAKFSDKEPNLVYTGGDDGSLSCWDIRI 197 (339)
T ss_pred heeeeEEEeeccCceEEEEcCCCcEEEEecc-eeeeeeccccccccee--eeeeecccCCCceEEecCCCceEEEEEecC
Confidence 12345667777654544 6777754442 23 333466777644 555566655556666699999999999995
Q ss_pred CCCCCcc-cccccCCeEEEEEcc-CCCEEEEEecCCcEEEEEECC-CcceeeEE--ecceeeeeecCCCCeEEEEeecCC
Q psy3710 174 PERPPLD-IAAHEAPLSCIALNQ-TGTRLATASYKGTLIRVFDTG-SGQKLNEL--RRGLCVLCPNSNNSLLAFPGRKSG 248 (424)
Q Consensus 174 ~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~d~~~i~iwd~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~dg 248 (424)
++..+.. .+.|...|.+|.-+| .+.++++|+.|.. |++||.+ -++++..- .+++..+..+|.-...+.++..-+
T Consensus 198 p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~ 276 (339)
T KOG0280|consen 198 PKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHN 276 (339)
T ss_pred CcceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhc
Confidence 4333333 567889999998876 5779999999999 9999998 45666443 356777777776554444344444
Q ss_pred eEEEEeCCCCCCC----CeeeccCCCCeEEEEEcCCCCEEEEEeC-CCcEEE-EEECCCC
Q psy3710 249 HVHLVDLADPERP----PLDIAAHEAPLSCIALNQTGTRLATASY-KGTLIR-VFDTGSG 302 (424)
Q Consensus 249 ~i~i~d~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~~i~-iwd~~~~ 302 (424)
-.+|.+....... ....+.|.+-...-.|.....+|||++. |+. ++ +|-.-++
T Consensus 277 G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~-~~~~Wl~~t~ 335 (339)
T KOG0280|consen 277 GAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKK-IRQLWLHITG 335 (339)
T ss_pred CceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccc-eeeeeeeccC
Confidence 5555555544322 1233456666666666444456777653 444 44 6654443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-08 Score=91.32 Aligned_cols=192 Identities=8% Similarity=-0.022 Sum_probs=123.4
Q ss_pred CeeeEEEeccCce-EEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe------eccEEEEee
Q psy3710 53 GLGHVEMLFRCNY-LALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL------EGLIKVYTF 125 (424)
Q Consensus 53 ~i~~~~~~~~~~~-l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~i~v~~~ 125 (424)
......|+|+++. +++.+... .+..|.++|+.+++.......++......|+||+..++. +..|.++++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~----~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGE----RKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccC----CCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 5667899999986 65555331 146899999988877665556666778889999965553 356777787
Q ss_pred cCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCC--eEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEE
Q psy3710 126 IQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSG--HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATA 203 (424)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 203 (424)
. .+. ...+..... ......|+|||+.|+.+....+ .|.+.|+.++........+. ....|+|+|+.++..
T Consensus 265 ~-~g~-~~~LT~~~~--~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~----~~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 265 N-TKT-LTQITNYPG--IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK----NNSSVSTYKNYIVYS 336 (419)
T ss_pred C-CCc-EEEcccCCC--ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC----cCceECCCCCEEEEE
Confidence 4 443 333433221 1234579999999988554444 57777777652212222221 124899999998877
Q ss_pred ecC---------CcEEEEEECCCcceeeEEec-ceeeeeecCCCCeEEEEeecCCe--EEEEeCCC
Q psy3710 204 SYK---------GTLIRVFDTGSGQKLNELRR-GLCVLCPNSNNSLLAFPGRKSGH--VHLVDLAD 257 (424)
Q Consensus 204 ~~d---------~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dg~--i~i~d~~~ 257 (424)
+.. .. |.+.|+.++....-... ......|+|+|+.++++....+. +.+.++..
T Consensus 337 ~~~~~~~~~~~~~~-I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 337 SRETNNEFGKNTFN-LYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EcCCCcccCCCCcE-EEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 654 25 88889887754322222 23357899999999887655443 55555544
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.7e-11 Score=102.21 Aligned_cols=196 Identities=19% Similarity=0.265 Sum_probs=140.9
Q ss_pred eEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCC------CCcccccccCCeEEEEEccCCCEEEEEec
Q psy3710 132 LHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER------PPLDIAAHEAPLSCIALNQTGTRLATASY 205 (424)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 205 (424)
+..+.+|... +.++.--.+.+-+++ ++.|.+|++|.++.... +..++..|+.+|.++.|-.+-++++++
T Consensus 728 L~nf~GH~~~--iRai~AidNENSFiS-ASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-- 802 (1034)
T KOG4190|consen 728 LCNFTGHQEK--IRAIAAIDNENSFIS-ASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-- 802 (1034)
T ss_pred eecccCcHHH--hHHHHhcccccceee-ccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--
Confidence 3445555533 333332223344555 89999999999975422 344778999999999999988887765
Q ss_pred CCcEEEEEECCCcceeeEEecc------eeeeeecCCCCeEEEEe-ecCCeEEEEeCCCCCCC--Ce--eeccCCCCeEE
Q psy3710 206 KGTLIRVFDTGSGQKLNELRRG------LCVLCPNSNNSLLAFPG-RKSGHVHLVDLADPERP--PL--DIAAHEAPLSC 274 (424)
Q Consensus 206 d~~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~dg~i~i~d~~~~~~~--~~--~~~~~~~~v~~ 274 (424)
|+. |.+||.--++++.++... ....|.-.-...++++| +...+++++|.+..+-. .+ ...+....+.+
T Consensus 803 D~g-iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 803 DGG-IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred cCc-ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence 777 999998877776544321 23344444345555545 78999999999986621 11 12345677899
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeecc-----------CCcEEEEEeCCCcEEE-EEcccccc
Q psy3710 275 IALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR-----------DSSYLCVSSDHGTVHV-FSVDEAQK 334 (424)
Q Consensus 275 ~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-----------~~~~l~~~~~d~~i~i-w~~~~~~~ 334 (424)
++..|.|++++.+-..|. |.+.|.++|+.+..|+| ..+.|+....|.++.+ |..-++..
T Consensus 882 iaVa~~GN~lAa~LSnGc-i~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 882 IAVADKGNKLAAALSNGC-IAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIM 952 (1034)
T ss_pred EEeccCcchhhHHhcCCc-EEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCee
Confidence 999999999999999999 99999999999998875 4566777777888888 88777654
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=4e-10 Score=110.36 Aligned_cols=197 Identities=15% Similarity=0.210 Sum_probs=149.5
Q ss_pred ccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCccccc-ccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEE
Q psy3710 8 TYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKER-QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIW 85 (424)
Q Consensus 8 ~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iw 85 (424)
.|-..|.++.=+|...+.++|+.+| +++|....++.+.. .......++.+.|+.+|+....+. .||.+.+|
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d-------~dg~l~l~ 2278 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVD-------GDGDLSLW 2278 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeec-------cCCceeec
Confidence 4556788888889888999999999 99999887777433 222347888899999999888777 48999999
Q ss_pred ECCCCcEEEEEe-ecCCeEEEEecCCceEEEe----eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEee
Q psy3710 86 DDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL----EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPG 160 (424)
Q Consensus 86 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~----~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (424)
... .+.....+ |......++|-.....-+. ++.+.+||.-........-..|. .+++++++-|..+.+++ |
T Consensus 2279 q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~--~gaT~l~~~P~~qllis-g 2354 (2439)
T KOG1064|consen 2279 QAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD--GGATVLAYAPKHQLLIS-G 2354 (2439)
T ss_pred ccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecC--CCceEEEEcCcceEEEe-c
Confidence 986 55555555 7778888888764444443 67999999743333222235665 45778888999998888 9
Q ss_pred ccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc
Q psy3710 161 RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG 227 (424)
Q Consensus 161 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~ 227 (424)
+.+|.|++||++.. +.++.++. +. ...++++++..|. ++||++.....+..++..
T Consensus 2355 gr~G~v~l~D~rqr-ql~h~~~~---------~~-~~~~f~~~ss~g~-ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQR-QLRHTFQA---------LD-TREYFVTGSSEGN-IKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred CCcCcEEEeehHHH-HHHHHhhh---------hh-hhheeeccCcccc-eEEEEccccchhhcCchh
Confidence 99999999999975 55555554 44 5679999999999 999999988888777754
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-09 Score=90.02 Aligned_cols=158 Identities=18% Similarity=0.176 Sum_probs=105.0
Q ss_pred eEEEEecCCceEEEe---eccEEEEeecCCCc---eeEEEeeCCCCCeeEEEeecCCCCeEEEeeccC---CeEEEEeCC
Q psy3710 102 VKGVRLRRDKIVVVL---EGLIKVYTFIQCPQ---QLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKS---GHVHLVDLA 172 (424)
Q Consensus 102 v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d---g~i~i~d~~ 172 (424)
+..+..++++.++|. +....++++..+.+ .+........+. ++.+-.+.....+ +..- ..+.+|...
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~---ai~~~~~~~sv~v-~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPT---AISFIREDTSVLV-ADKAGDVYSFDILSAD 140 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcc---eeeeeeccceEEE-EeecCCceeeeeeccc
Confidence 344556677777765 44555666653333 223333333333 3333334444443 4444 444555544
Q ss_pred CCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEE
Q psy3710 173 DPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHL 252 (424)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i 252 (424)
. .....+-+|-..+..++|+||++.++++..|.. |++-....--.+..+
T Consensus 141 ~--~~~~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~f~Iesf---------------------------- 189 (390)
T KOG3914|consen 141 S--GRCEPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPATFVIESF---------------------------- 189 (390)
T ss_pred c--cCcchhhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcccchhhh----------------------------
Confidence 3 344566799999999999999999999999999 988776543222221
Q ss_pred EeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeee
Q psy3710 253 VDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNEL 308 (424)
Q Consensus 253 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~ 308 (424)
.-+|+.-|..++.-++ ..|+++|.|++ +++||+.+|+++.++
T Consensus 190 ------------clGH~eFVS~isl~~~-~~LlS~sGD~t-lr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 190 ------------CLGHKEFVSTISLTDN-YLLLSGSGDKT-LRLWDITSGKLLDTC 231 (390)
T ss_pred ------------ccccHhheeeeeeccC-ceeeecCCCCc-EEEEecccCCccccc
Confidence 1289999999999765 56999999999 999999999998875
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-07 Score=75.11 Aligned_cols=215 Identities=14% Similarity=0.087 Sum_probs=123.4
Q ss_pred EeecCCCCeEEEeeccCCeEEEEeCCCCCCC-Ccccc---cccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceee
Q psy3710 147 LCPNSNNSLLAFPGRKSGHVHLVDLADPERP-PLDIA---AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN 222 (424)
Q Consensus 147 ~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~-~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~ 222 (424)
++.+++|+.||+ -.|..|.|-..+..-.. +.... .....=+.++|+||+..||.+...|+ |+++|+.. ..+.
T Consensus 3 ~~~~~~Gk~lAi--~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~-i~vfdl~g-~~lf 78 (282)
T PF15492_consen 3 LALSSDGKLLAI--LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGT-IRVFDLMG-SELF 78 (282)
T ss_pred eeecCCCcEEEE--EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCe-EEEEeccc-ceeE
Confidence 455678888885 66777777666543211 11222 22234578999999999999999999 99999964 3333
Q ss_pred EEecc----------eeeeeecCCC-----CeEEEEeecCCeEEEEeCCCC--C--CCCee--ec-cCCCCeEEEEEcCC
Q psy3710 223 ELRRG----------LCVLCPNSNN-----SLLAFPGRKSGHVHLVDLADP--E--RPPLD--IA-AHEAPLSCIALNQT 280 (424)
Q Consensus 223 ~~~~~----------~~~~~~~~~~-----~~~~~~~~~dg~i~i~d~~~~--~--~~~~~--~~-~~~~~v~~~~~~~~ 280 (424)
.++.. +..+.|.+.. ...++.-...|.++-|-+..+ + ..... +. .+...|.++.++|.
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 33321 2233332221 223333677887777765321 1 11222 22 34678999999999
Q ss_pred CCEEEEEeCCCcE----------EEEEECCCCceeeeeccCCcEEEEEeCCC------cEEEEEccccccccccccceee
Q psy3710 281 GTRLATASYKGTL----------IRVFDTGSGQKLNELRRDSSYLCVSSDHG------TVHVFSVDEAQKINKQSSLASA 344 (424)
Q Consensus 281 ~~~l~~~~~d~~~----------i~iwd~~~~~~~~~~~~~~~~l~~~~~d~------~i~iw~~~~~~~~~~~~~~~~~ 344 (424)
-++|+.|+..... +..|.+-++.+-. +. ++...|+ +..+|++.+.+...
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyy------k~-v~~~~~~~~~~~~~~~~~~~~~~~~fs-------- 223 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYY------KQ-VTSSEDDITASSKRRGLLRIPSFKFFS-------- 223 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcE------EE-ccccCccccccccccceeeccceeeee--------
Confidence 8888877654320 3344333332211 11 1111111 11222222211100
Q ss_pred eccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 345 SFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
........|-.|..||||+.||+...+|.|.+|+++
T Consensus 224 --------------~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 224 --------------RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred --------------ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 001123457789999999999999999999999997
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.8e-09 Score=87.36 Aligned_cols=298 Identities=14% Similarity=0.144 Sum_probs=197.6
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcc---cccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCe
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKE---KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNR 81 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 81 (424)
..-|.+.|+.+.-+ -.+++.+++-+| ++.|.-..... +.....|.+.+.+++.+.++-.+.+.+. .|+.
T Consensus 5 symhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d------~Dhs 77 (558)
T KOG0882|consen 5 SYMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVED------PDHS 77 (558)
T ss_pred hhcccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccC------cccc
Confidence 44688888887555 446888888888 99998554222 2223346778888888888887777663 3899
Q ss_pred EEEEECCCCcEEEEEee---cCCeEEEEecCCce-EEE-e---eccEEEEeecCCC-ceeEEEeeCCCCCeeEEEeecCC
Q psy3710 82 VMIWDDLKKQVVICLEF---NAPVKGVRLRRDKI-VVV-L---EGLIKVYTFIQCP-QQLHVFETNPNPKGLCVLCPNSN 152 (424)
Q Consensus 82 i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~-~~~-~---~~~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 152 (424)
++++|+++-..+.-++. ++.+..+.-..+-. .++ + ++.+.++|-..+. +....-+.|..+ +..+.+++-
T Consensus 78 ~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sP--V~~i~y~qa 155 (558)
T KOG0882|consen 78 VKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSP--VKKIRYNQA 155 (558)
T ss_pred eeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCc--eEEEEeecc
Confidence 99999987766654442 33333322222221 222 2 7899999976444 333444556655 667778888
Q ss_pred CCeEEEeeccCCeEEEEeCCCCCC-C-------------CcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCc
Q psy3710 153 NSLLAFPGRKSGHVHLVDLADPER-P-------------PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG 218 (424)
Q Consensus 153 ~~~l~~~~~~dg~i~i~d~~~~~~-~-------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~ 218 (424)
+..+++ ....|.|.-|.....-+ + +..+...+....++.|+|+|..+.+-+.|.. |++++.+++
T Consensus 156 ~Ds~vS-iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk-VR~F~~KtG 233 (558)
T KOG0882|consen 156 GDSAVS-IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK-VRGFVFKTG 233 (558)
T ss_pred ccceee-ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccE-EEEEEeccc
Confidence 888877 88899999999873111 1 1112234567889999999999999999999 999999999
Q ss_pred ceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCC--CCeeeccCC-CCeEEEEEcCCCCEEEEEeCCCcEEE
Q psy3710 219 QKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER--PPLDIAAHE-APLSCIALNQTGTRLATASYKGTLIR 295 (424)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~--~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~~i~ 295 (424)
+.++.+.........-|...+ .+-.+.-++. ..+.+..|. ..-+.+.|...|++|+.++-=| |+
T Consensus 234 klvqeiDE~~t~~~~q~ks~y-----------~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g--ik 300 (558)
T KOG0882|consen 234 KLVQEIDEVLTDAQYQPKSPY-----------GLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG--IK 300 (558)
T ss_pred hhhhhhhccchhhhhcccccc-----------ccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee--EE
Confidence 988887644222222222211 1111111111 111222333 3446688999999999999988 89
Q ss_pred EEECCCCceeeee-------------------------------------ccCCcEEEEEeCCCcEEEE
Q psy3710 296 VFDTGSGQKLNEL-------------------------------------RRDSSYLCVSSDHGTVHVF 327 (424)
Q Consensus 296 iwd~~~~~~~~~~-------------------------------------~~~~~~l~~~~~d~~i~iw 327 (424)
+.++.++++.+.+ .+|..+++++-....+++|
T Consensus 301 vin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 301 VINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 9999998887753 2466778888888888888
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-07 Score=76.70 Aligned_cols=219 Identities=14% Similarity=0.211 Sum_probs=126.2
Q ss_pred EEEecCCceEEEe--eccEEEEeecCCCc-eeEEEeeCCCC-CeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCc
Q psy3710 104 GVRLRRDKIVVVL--EGLIKVYTFIQCPQ-QLHVFETNPNP-KGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL 179 (424)
Q Consensus 104 ~~~~~~~~~~~~~--~~~i~v~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~ 179 (424)
.++.+++|+++|. |..|.+-..+++.. .+.......++ ..-..++|+||+..||. +...|+|++||+... .+.
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~-a~S~G~i~vfdl~g~--~lf 78 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAY-AESTGTIRVFDLMGS--ELF 78 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEE-EcCCCeEEEEecccc--eeE
Confidence 3567788988886 88888877653322 22333333322 22457899999999999 999999999999853 222
Q ss_pred ccc-------cccCCeEEEEEccCC------CEEEEEecCCcEEEEEECCC-----cceeeEE------ecceeeeeecC
Q psy3710 180 DIA-------AHEAPLSCIALNQTG------TRLATASYKGTLIRVFDTGS-----GQKLNEL------RRGLCVLCPNS 235 (424)
Q Consensus 180 ~~~-------~~~~~v~~~~~~~~~------~~l~~~~~d~~~i~iwd~~~-----~~~~~~~------~~~~~~~~~~~ 235 (424)
.+. .-...|..+.|.+.. ..|+....+|. ++-|-+.. .+....+ +.++..++++|
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~-L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ-LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP 157 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccce-eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence 111 124567777775531 25666677777 77766532 2233333 23588899999
Q ss_pred CCCeEEEEeecCCe----------EEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCc----EEEEEECC-
Q psy3710 236 NNSLLAFPGRKSGH----------VHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGT----LIRVFDTG- 300 (424)
Q Consensus 236 ~~~~~~~~~~~dg~----------i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~----~i~iwd~~- 300 (424)
..+.++++|..... +..|.+-++..-.+....-...+. ......+- .++++...
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~-----------~~~~~~~~~~~~~~~~fs~~~ 226 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDIT-----------ASSKRRGLLRIPSFKFFSRQG 226 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccc-----------ccccccceeeccceeeeeccc
Confidence 99999987765442 333433332211111111111111 00000110 02222211
Q ss_pred ---CCceeeeeccCCcEEEEEeCCCcEEEEEccccccccc
Q psy3710 301 ---SGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINK 337 (424)
Q Consensus 301 ---~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 337 (424)
.+--...++|||..||+...+|.|.+|++.+-+....
T Consensus 227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcc
Confidence 1222335789999999999999999999888655443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.1e-07 Score=75.06 Aligned_cols=208 Identities=18% Similarity=0.170 Sum_probs=138.8
Q ss_pred cCCeEEEEecCC-ceEEEe----eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEe----eccCCeEEEE
Q psy3710 99 NAPVKGVRLRRD-KIVVVL----EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFP----GRKSGHVHLV 169 (424)
Q Consensus 99 ~~~v~~~~~~~~-~~~~~~----~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~dg~i~i~ 169 (424)
+.....++.+|+ ...++. .....+||.. +++....+....+...--.-.|++||++|+++ ....|.|-+|
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~-~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCR-TGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcC-CCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 445667888884 444444 4578899986 77777766655443323345789999999984 2336899999
Q ss_pred eCCCCCCCCcccccccCCeEEEEEccCCCEEEEEe------------------cCCcEEEEEECCCcceeeEEec-----
Q psy3710 170 DLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS------------------YKGTLIRVFDTGSGQKLNELRR----- 226 (424)
Q Consensus 170 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------------~d~~~i~iwd~~~~~~~~~~~~----- 226 (424)
|....-+.+.++..|.-.-..+.+.|||+.|+.+. .+.. +...|..+|+.+.+...
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~ps-L~~ld~~sG~ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPS-LVYLDARSGALLEQVELPPDLH 161 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCc-eEEEecCCCceeeeeecCcccc
Confidence 99954466667777776778889999998877653 1223 66677788887766432
Q ss_pred --ceeeeeecCCCCeEEEEeecCC-------eEEEEeCCCCCCC----CeeeccCCCCeEEEEEcCCCCEEEEEeCCCcE
Q psy3710 227 --GLCVLCPNSNNSLLAFPGRKSG-------HVHLVDLADPERP----PLDIAAHEAPLSCIALNQTGTRLATASYKGTL 293 (424)
Q Consensus 227 --~~~~~~~~~~~~~~~~~~~~dg-------~i~i~d~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~ 293 (424)
.+.-+++.+++..++. .-..| -+.+++....-.. ......-.+.+-+|++++++.++++.+.-|..
T Consensus 162 ~lSiRHLa~~~~G~V~~a-~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFA-MQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred ccceeeEEecCCCcEEEE-EecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 2566777777665544 22222 2333333321110 01112345778999999999999888887766
Q ss_pred EEEEECCCCceeeeec
Q psy3710 294 IRVFDTGSGQKLNELR 309 (424)
Q Consensus 294 i~iwd~~~~~~~~~~~ 309 (424)
+.+||..+++.+....
T Consensus 241 ~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVP 256 (305)
T ss_pred EEEEECCCCCEeeccc
Confidence 9999999999988653
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=6e-09 Score=87.11 Aligned_cols=147 Identities=14% Similarity=0.116 Sum_probs=101.1
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEEECCCcce----eeEEec--ceeeeeecCCCCeEEE--EeecCCeEEEEeCCCCC
Q psy3710 188 LSCIALNQTGTRLATASYKGTLIRVFDTGSGQK----LNELRR--GLCVLCPNSNNSLLAF--PGRKSGHVHLVDLADPE 259 (424)
Q Consensus 188 v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~--~~~~dg~i~i~d~~~~~ 259 (424)
...+..++.+++++.+..+.. ..++++..... ...... ....+.+........+ ..++...+.+|....+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~-~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~- 142 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQ-RAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG- 142 (390)
T ss_pred ccccccCCCceEEEEEeCCCc-eEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc-
Confidence 445566788888888888887 77888765443 222222 2333444444444443 2334445555555543
Q ss_pred CCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec------------cCCcEEEEEeCCCcEEEE
Q psy3710 260 RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR------------RDSSYLCVSSDHGTVHVF 327 (424)
Q Consensus 260 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~------------~~~~~l~~~~~d~~i~iw 327 (424)
....+-+|-+.++.++|+||+++++++..|.. ||+-....-..+..|- -++..|+++|.|++|++|
T Consensus 143 -~~~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 143 -RCEPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLW 220 (390)
T ss_pred -CcchhhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEE
Confidence 23444599999999999999999999999999 9998877655444432 256678999999999999
Q ss_pred Ecccccccccc
Q psy3710 328 SVDEAQKINKQ 338 (424)
Q Consensus 328 ~~~~~~~~~~~ 338 (424)
|+.+|+++...
T Consensus 221 d~~sgk~L~t~ 231 (390)
T KOG3914|consen 221 DITSGKLLDTC 231 (390)
T ss_pred ecccCCccccc
Confidence 99999988643
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-07 Score=78.12 Aligned_cols=213 Identities=16% Similarity=0.188 Sum_probs=130.7
Q ss_pred EEEEeCCcCcccccccccCCCeeeEE--EeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEE-EEecC
Q psy3710 33 FRIYNCDPLKEKERQDFTDGGLGHVE--MLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKG-VRLRR 109 (424)
Q Consensus 33 i~iw~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~-~~~~~ 109 (424)
|..||..+++.+....... ...... ..++++.+++.+ .++.+..||..+|+.+.++..+..+.. .....
T Consensus 5 l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~-------~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~ 76 (238)
T PF13360_consen 5 LSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVAS-------GDGNLYALDAKTGKVLWRFDLPGPISGAPVVDG 76 (238)
T ss_dssp EEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEE-------TTSEEEEEETTTSEEEEEEECSSCGGSGEEEET
T ss_pred EEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEc-------CCCEEEEEECCCCCEEEEeeccccccceeeecc
Confidence 7788887777765554411 122222 444666776665 379999999999999998886554333 34445
Q ss_pred CceEEEe-eccEEEEeecCCCceeEEE-eeCCCCCe-eEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccC
Q psy3710 110 DKIVVVL-EGLIKVYTFIQCPQQLHVF-ETNPNPKG-LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEA 186 (424)
Q Consensus 110 ~~~~~~~-~~~i~v~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 186 (424)
+..+++. ++.+..+|.. +++.+... ........ .....+...+..+++ +..++.|..+|++++ +.+........
T Consensus 77 ~~v~v~~~~~~l~~~d~~-tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~l~~~d~~tG-~~~w~~~~~~~ 153 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAK-TGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYV-GTSSGKLVALDPKTG-KLLWKYPVGEP 153 (238)
T ss_dssp TEEEEEETTSEEEEEETT-TSCEEEEEEE-SSCTCSTB--SEEEEETTEEEE-EETCSEEEEEETTTT-EEEEEEESSTT
T ss_pred cccccccceeeeEecccC-CcceeeeeccccccccccccccCceEecCEEEE-EeccCcEEEEecCCC-cEEEEeecCCC
Confidence 5555555 7889999976 78877773 33311111 111122223667776 777999999999987 44444333221
Q ss_pred C----------eEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCC
Q psy3710 187 P----------LSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLA 256 (424)
Q Consensus 187 ~----------v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~ 256 (424)
. +..-....++ .++.++.++. +..+|+.+++.+.+.............+..+++ ++.++.+..||++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~-~~~~d~~tg~~~w~~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGR-VVAVDLATGEKLWSKPISGIYSLPSVDGGTLYV-TSSDGRLYALDLK 230 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSS-EEEEETTTTEEEEEECSS-ECECEECCCTEEEE-EETTTEEEEEETT
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCe-EEEEECCCCCEEEEecCCCccCCceeeCCEEEE-EeCCCEEEEEECC
Confidence 1 1222222344 7777777775 444499999866544422222225567777776 4489999999999
Q ss_pred CCC
Q psy3710 257 DPE 259 (424)
Q Consensus 257 ~~~ 259 (424)
+++
T Consensus 231 tG~ 233 (238)
T PF13360_consen 231 TGK 233 (238)
T ss_dssp TTE
T ss_pred CCC
Confidence 876
|
... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-06 Score=76.31 Aligned_cols=245 Identities=13% Similarity=0.131 Sum_probs=131.0
Q ss_pred CCCCCeeEee----------cCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECC
Q psy3710 19 NQDQGCFACG----------MEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL 88 (424)
Q Consensus 19 s~~g~~la~g----------~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~ 88 (424)
|||+++++.. ....+.|||+++++....... ...+....|+|+++.++.+. ++.|.+++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~--------~~nly~~~~~ 71 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR--------DNNLYLRDLA 71 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE--------TTEEEEESST
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe--------cCceEEEECC
Confidence 6888888863 222388999998766443333 56788899999999999998 6899999988
Q ss_pred CCcEEEEEe-ec-----------------CCeEEEEecCCceEEEe----eccEEEEeecCCCceeEEEeeCCCCCeeEE
Q psy3710 89 KKQVVICLE-FN-----------------APVKGVRLRRDKIVVVL----EGLIKVYTFIQCPQQLHVFETNPNPKGLCV 146 (424)
Q Consensus 89 ~~~~~~~~~-~~-----------------~~v~~~~~~~~~~~~~~----~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 146 (424)
+++..+... .. +.-.++.||||+..++. +..+..+.+-....... .. .....
T Consensus 72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-----~y-p~~~~ 145 (353)
T PF00930_consen 72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-----QY-PEVES 145 (353)
T ss_dssp TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-----SS--EEEE
T ss_pred CCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-----cC-Ccccc
Confidence 774443221 11 12356889999988875 44554444321000000 00 01112
Q ss_pred EeecCCCCeEEEeeccCC--eEEEEeCCCCCCCCcc----cccccCCeEEEEEccCCCEEEEE--ecCCc--EEEEEECC
Q psy3710 147 LCPNSNNSLLAFPGRKSG--HVHLVDLADPERPPLD----IAAHEAPLSCIALNQTGTRLATA--SYKGT--LIRVFDTG 216 (424)
Q Consensus 147 ~~~~~~~~~l~~~~~~dg--~i~i~d~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~--~~d~~--~i~iwd~~ 216 (424)
+.+-.- |..+. .+.++|+.+++..... ...-..-+..+.|.++++.|+.. ..+.. .+.+.|..
T Consensus 146 ~~YPk~-------G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~ 218 (353)
T PF00930_consen 146 IRYPKA-------GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAS 218 (353)
T ss_dssp EE--BT-------TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEEC
T ss_pred cccCCC-------CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECC
Confidence 221111 22222 4556788775321111 12335568899999999844443 33322 26667887
Q ss_pred CcceeeEEe--cc-----eeeeeec-CCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEE-EEEcCCCCEEE
Q psy3710 217 SGQKLNELR--RG-----LCVLCPN-SNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSC-IALNQTGTRLA 285 (424)
Q Consensus 217 ~~~~~~~~~--~~-----~~~~~~~-~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~ 285 (424)
+++...... .+ .....+. +++..++.....+|.-++|-+.........+....-.|.. +.++++++.|+
T Consensus 219 tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iy 296 (353)
T PF00930_consen 219 TGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIY 296 (353)
T ss_dssp TTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEE
T ss_pred CCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEE
Confidence 765433332 11 2234443 7777777767788865555444333223344444555644 55666655444
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.7e-07 Score=76.41 Aligned_cols=215 Identities=16% Similarity=0.141 Sum_probs=127.9
Q ss_pred CCeEEEEECCCCcEEEEEeecC---CeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCC
Q psy3710 79 NNRVMIWDDLKKQVVICLEFNA---PVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNN 153 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (424)
+++|..||..+|+.+....... ...+..+..++.+++. ++.+..||.. +++.+..+.......... ...+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~-tG~~~W~~~~~~~~~~~~----~~~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAK-TGKVLWRFDLPGPISGAP----VVDG 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETT-TSEEEEEEECSSCGGSGE----EEET
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECC-CCCEEEEeecccccccee----eecc
Confidence 6899999999999999988532 2222234344444443 8899999986 788887777633222221 1234
Q ss_pred CeEEEeeccCCeEEEEeCCCCCCCCccc-cccc---CCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEeccee
Q psy3710 154 SLLAFPGRKSGHVHLVDLADPERPPLDI-AAHE---APLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLC 229 (424)
Q Consensus 154 ~~l~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~ 229 (424)
..+++ +..++.++.+|..++ +..... .... ..........++..++.+..++. |..+|.++|+.+...+....
T Consensus 77 ~~v~v-~~~~~~l~~~d~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 77 GRVYV-GTSDGSLYALDAKTG-KVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK-LVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp TEEEE-EETTSEEEEEETTTS-CEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE-EEEEETTTTEEEEEEESSTT
T ss_pred ccccc-ccceeeeEecccCCc-ceeeeeccccccccccccccCceEecCEEEEEeccCc-EEEEecCCCcEEEEeecCCC
Confidence 55555 668889999998887 444442 2211 11122233334778888888898 99999999998877754310
Q ss_pred ------------eeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy3710 230 ------------VLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVF 297 (424)
Q Consensus 230 ------------~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iw 297 (424)
.....-.+..+++ +..++.+..+|+.+++... ... ...+.. ...+++..|+.++.++. |..|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~g~~~~~d~~tg~~~w-~~~--~~~~~~-~~~~~~~~l~~~~~~~~-l~~~ 227 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDGRVYV-SSGDGRVVAVDLATGEKLW-SKP--ISGIYS-LPSVDGGTLYVTSSDGR-LYAL 227 (238)
T ss_dssp -SS--EEEETTEEEEEECCTTEEEE-ECCTSSEEEEETTTTEEEE-EEC--SS-ECE-CEECCCTEEEEEETTTE-EEEE
T ss_pred CCCcceeeecccccceEEECCEEEE-EcCCCeEEEEECCCCCEEE-Eec--CCCccC-CceeeCCEEEEEeCCCE-EEEE
Confidence 0111112234444 5555543333877766321 111 122222 13456667777777777 8888
Q ss_pred ECCCCceeee
Q psy3710 298 DTGSGQKLNE 307 (424)
Q Consensus 298 d~~~~~~~~~ 307 (424)
|+++|+.+.+
T Consensus 228 d~~tG~~~W~ 237 (238)
T PF13360_consen 228 DLKTGKVVWQ 237 (238)
T ss_dssp ETTTTEEEEE
T ss_pred ECCCCCEEeE
Confidence 8888877653
|
... |
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=1e-08 Score=87.00 Aligned_cols=245 Identities=15% Similarity=0.137 Sum_probs=171.8
Q ss_pred CCCeEEEeeccCCeEEEEeCCC--CCCCCcccccccCCeEEEEEccCCCEEEEEec-CCcEEEEEECCCcceeeEEecc-
Q psy3710 152 NNSLLAFPGRKSGHVHLVDLAD--PERPPLDIAAHEAPLSCIALNQTGTRLATASY-KGTLIRVFDTGSGQKLNELRRG- 227 (424)
Q Consensus 152 ~~~~l~~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~~i~iwd~~~~~~~~~~~~~- 227 (424)
-.+++.. ++.||.++.|.-.. +-..+..+..|...|.+++.+-++..+.+.+. |.. ++++|+++-..+..++..
T Consensus 19 ka~fiiq-ASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs-~KvfDvEn~DminmiKL~~ 96 (558)
T KOG0882|consen 19 KAKFIIQ-ASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHS-VKVFDVENFDMINMIKLVD 96 (558)
T ss_pred hhheEEe-eecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccc-eeEEEeeccchhhhccccc
Confidence 3456666 99999999997543 22445677889999999999999999999777 999 999999876655433322
Q ss_pred -eeeeeecCCC----CeEEEEeecCCeEEEEeCCCCCCCC-eeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCC
Q psy3710 228 -LCVLCPNSNN----SLLAFPGRKSGHVHLVDLADPERPP-LDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 228 -~~~~~~~~~~----~~~~~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~ 301 (424)
....+|.... ..++++...++.+.++|-....++. ....-|..+|..+.+.|-+..+.+....|. |.-|....
T Consensus 97 lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm-VEyWs~e~ 175 (558)
T KOG0882|consen 97 LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM-VEYWSAEG 175 (558)
T ss_pred CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce-eEeecCCC
Confidence 2233332222 2567777789999999998776433 344579999999999999999999999999 99998873
Q ss_pred ------Cceee---------------------eeccCCcEEEEEeCCCcEEEEEccccccccccccc-eeeeccCccccC
Q psy3710 302 ------GQKLN---------------------ELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSL-ASASFLPKYFSS 353 (424)
Q Consensus 302 ------~~~~~---------------------~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~ 353 (424)
.+... +|+|++..+.+-+.|..|++++..+|+.++..... ...++.|+...+
T Consensus 176 ~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~ 255 (558)
T KOG0882|consen 176 PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYG 255 (558)
T ss_pred cccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccc
Confidence 11111 36789999999999999999999999877654332 112222221100
Q ss_pred ------CceeeE---Eeec-CCCceEEEEecCCCeEEEEeccCcEEEEEecCCcceee
Q psy3710 354 ------SWSFCK---FQIP-SDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWR 401 (424)
Q Consensus 354 ------~~~~~~---~~~~-~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~~~ 401 (424)
..+++. .+.+ ...-+...|...|++|+.++-=| |++.++. +++++|
T Consensus 256 l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~-tn~v~r 311 (558)
T KOG0882|consen 256 LMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLD-TNTVVR 311 (558)
T ss_pred cceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEee-cCeEEE
Confidence 011110 1112 23345678999999999988654 7888887 666666
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.7e-08 Score=78.41 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=74.1
Q ss_pred eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEcc-
Q psy3710 117 EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ- 195 (424)
Q Consensus 117 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~- 195 (424)
-+..+.|++++........ .....+.+++-+|..+.++++|+.||.+.+||.+....+...+..|+.+|..+-|+|
T Consensus 158 ~d~~~a~~~~p~~t~~~~~---~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk 234 (319)
T KOG4714|consen 158 QDNFYANTLDPIKTLIPSK---KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK 234 (319)
T ss_pred ccceeeecccccccccccc---cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC
Confidence 3456667665322222211 122337778888887777777999999999999987667778899999999999999
Q ss_pred CCCEEEEEecCCcEEEEEECCC
Q psy3710 196 TGTRLATASYKGTLIRVFDTGS 217 (424)
Q Consensus 196 ~~~~l~~~~~d~~~i~iwd~~~ 217 (424)
++..|.++++||. +.-||..+
T Consensus 235 ~p~~Lft~sedGs-lw~wdas~ 255 (319)
T KOG4714|consen 235 NPEHLFTCSEDGS-LWHWDAST 255 (319)
T ss_pred CchheeEecCCCc-EEEEcCCC
Confidence 6789999999999 99999764
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.96 E-value=4e-06 Score=69.85 Aligned_cols=234 Identities=15% Similarity=0.126 Sum_probs=147.6
Q ss_pred ceEEEEECC-CCCeeEeecCCe--EEEEeCCcCcccccccccCC--CeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEE
Q psy3710 12 GLLYAGFNQ-DQGCFACGMEDG--FRIYNCDPLKEKERQDFTDG--GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWD 86 (424)
Q Consensus 12 ~V~~~~~s~-~g~~la~g~~~~--i~iw~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd 86 (424)
....++.+| ++..++.+..-| ..+||..+++.........+ -...-.|++++++|++.-..... ..|.|-|||
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~--g~G~IgVyd 83 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYET--GRGVIGVYD 83 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCC--CcEEEEEEE
Confidence 445688999 557777888877 99999999888655444333 23457899999999887543211 368999999
Q ss_pred CC-CCcEEEEEe-ecCCeEEEEecCCce-EEEee--------------------ccEEEEeecCCCceeEEEee--CCCC
Q psy3710 87 DL-KKQVVICLE-FNAPVKGVRLRRDKI-VVVLE--------------------GLIKVYTFIQCPQQLHVFET--NPNP 141 (424)
Q Consensus 87 ~~-~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~~--------------------~~i~v~~~~~~~~~~~~~~~--~~~~ 141 (424)
.. +-+.+.++. +.-....+.+.||+. +++.. .++...|.. +++.+..... ..+.
T Consensus 84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~-sG~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR-SGALLEQVELPPDLHQ 162 (305)
T ss_pred CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC-CCceeeeeecCccccc
Confidence 98 556666666 555677888999993 33331 233444443 5566655443 3344
Q ss_pred CeeEEEeecCCCCeEEEeeccCC-------eEEEEeCCCCCC----CCcccccccCCeEEEEEccCCCEEEEEecCCcEE
Q psy3710 142 KGLCVLCPNSNNSLLAFPGRKSG-------HVHLVDLADPER----PPLDIAAHEAPLSCIALNQTGTRLATASYKGTLI 210 (424)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~dg-------~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i 210 (424)
..+..+++.++|..++. .-..| .|.+++....-. +......-.+.+-+|++++++..+++.+-.+..+
T Consensus 163 lSiRHLa~~~~G~V~~a-~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFA-MQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred cceeeEEecCCCcEEEE-EecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence 56788888888876664 32222 233443332100 1111233457789999999998886665444339
Q ss_pred EEEECCCcceeeEEecc-eeeeeecCCCCeEEEEeecCCeEEE
Q psy3710 211 RVFDTGSGQKLNELRRG-LCVLCPNSNNSLLAFPGRKSGHVHL 252 (424)
Q Consensus 211 ~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~dg~i~i 252 (424)
.+||..+++.+...... .+.++..+.+ +++ .+..|.+..
T Consensus 242 ~~~d~~tg~~~~~~~l~D~cGva~~~~~--f~~-ssG~G~~~~ 281 (305)
T PF07433_consen 242 AVWDAATGRLLGSVPLPDACGVAPTDDG--FLV-SSGQGQLIR 281 (305)
T ss_pred EEEECCCCCEeeccccCceeeeeecCCc--eEE-eCCCccEEE
Confidence 99999999988877644 5556665555 443 333444333
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=8e-09 Score=95.14 Aligned_cols=181 Identities=18% Similarity=0.240 Sum_probs=132.3
Q ss_pred cCCceEEEe-eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccC
Q psy3710 108 RRDKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEA 186 (424)
Q Consensus 108 ~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 186 (424)
.|+....+. -..+..+|++ ..+..+....... ++.-+.. +++++.+ |...|+|.+-|.++. +.++++.+|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~-~~~e~r~~~v~a~--~v~imR~--Nnr~lf~-G~t~G~V~LrD~~s~-~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLN-TEKETRTTNVSAS--GVTIMRY--NNRNLFC-GDTRGTVFLRDPNSF-ETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecc-cceeeeeeeccCC--ceEEEEe--cCcEEEe-ecccceEEeecCCcC-ceeeeeecccc
Confidence 344444443 5567777875 4444444433332 2444443 5677877 999999999999987 88999999999
Q ss_pred CeEEEEEccCCCEEEEEecC---------CcEEEEEECCCcceeeEEec--ceeeeeecCCCCeEEEEeecCCeEEEEe-
Q psy3710 187 PLSCIALNQTGTRLATASYK---------GTLIRVFDTGSGQKLNELRR--GLCVLCPNSNNSLLAFPGRKSGHVHLVD- 254 (424)
Q Consensus 187 ~v~~~~~~~~~~~l~~~~~d---------~~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~dg~i~i~d- 254 (424)
.|.++.. .|+.|++++.. .- |++||++..+.+..+.. +...+.+.|.-...++..+..|...+.|
T Consensus 219 siSDfDv--~GNlLitCG~S~R~~~l~~D~F-vkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 219 SISDFDV--QGNLLITCGYSMRRYNLAMDPF-VKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDT 295 (1118)
T ss_pred ceeeeec--cCCeEEEeecccccccccccch-hhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccc
Confidence 9988765 57899998754 44 89999998887765543 3566778888777777799999999999
Q ss_pred --CCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEC
Q psy3710 255 --LADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDT 299 (424)
Q Consensus 255 --~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~ 299 (424)
+.++..-...+......+..+.++++++.||.+..+|. |.+|.-
T Consensus 296 ~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~-v~~wa~ 341 (1118)
T KOG1275|consen 296 ATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGH-VNLWAD 341 (1118)
T ss_pred cccCCCccceeEEccCCCcceeEEecCCCceEEEecccCc-EeeecC
Confidence 44443223334445566999999999999999999999 999983
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-06 Score=77.91 Aligned_cols=294 Identities=14% Similarity=0.128 Sum_probs=165.3
Q ss_pred CeeEeecCCe-EEEEeCCcCcccccccccCC------CeeeEEEeccC-ceEEEEeCCcCCCcCCCeEEEEECCCCcEEE
Q psy3710 23 GCFACGMEDG-FRIYNCDPLKEKERQDFTDG------GLGHVEMLFRC-NYLALVGGGTHPKYPNNRVMIWDDLKKQVVI 94 (424)
Q Consensus 23 ~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~------~i~~~~~~~~~-~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 94 (424)
..+..++.++ +.-.|..+++.+........ .+..-.....+ +.+++.+ .++.|.-+|.++|+.+.
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~-------~~g~v~AlD~~TG~~~W 134 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT-------FDGRLVALDAETGKQVW 134 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEec-------CCCeEEEEECCCCCEee
Confidence 3455555555 88889988887655443221 00000001112 4554444 37999999999999998
Q ss_pred EEeecCC------eE-EEEecCCceEEEe----------eccEEEEeecCCCceeEEEeeCCCCC---------------
Q psy3710 95 CLEFNAP------VK-GVRLRRDKIVVVL----------EGLIKVYTFIQCPQQLHVFETNPNPK--------------- 142 (424)
Q Consensus 95 ~~~~~~~------v~-~~~~~~~~~~~~~----------~~~i~v~~~~~~~~~~~~~~~~~~~~--------------- 142 (424)
++..... +. +..+..+..++.+ ++.+..+|.. +++.+..++......
T Consensus 135 ~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~-TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 213 (488)
T cd00216 135 KFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVE-TGKLLWRFYTTEPDPNAFPTWGPDRQMWGP 213 (488)
T ss_pred eecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECC-CCceeeEeeccCCCcCCCCCCCCCcceecC
Confidence 8874333 11 2223332233322 3567788875 677766665421100
Q ss_pred ---ee-EEEeecCCCCeEEEeeccCC------------------eEEEEeCCCCCCCCcccc--ccc--------CCe-E
Q psy3710 143 ---GL-CVLCPNSNNSLLAFPGRKSG------------------HVHLVDLADPERPPLDIA--AHE--------APL-S 189 (424)
Q Consensus 143 ---~~-~~~~~~~~~~~l~~~~~~dg------------------~i~i~d~~~~~~~~~~~~--~~~--------~~v-~ 189 (424)
.+ ......+.+..+++ +..++ .|.-+|..++ +..-.++ .|. .++ .
T Consensus 214 ~g~~vw~~pa~d~~~g~V~v-g~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG-~~~W~~~~~~~~~~~~~~~s~p~~~ 291 (488)
T cd00216 214 GGGTSWASPTYDPKTNLVYV-GTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG-KVKWFYQTTPHDLWDYDGPNQPSLA 291 (488)
T ss_pred CCCCccCCeeEeCCCCEEEE-ECCCCCCCccCCccCCCCCCceeeEEEEcCCCC-CEEEEeeCCCCCCcccccCCCCeEE
Confidence 00 01233344556666 66554 7888898887 4333322 111 111 1
Q ss_pred EEEEccCCC---EEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEE-----------------eecCCe
Q psy3710 190 CIALNQTGT---RLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFP-----------------GRKSGH 249 (424)
Q Consensus 190 ~~~~~~~~~---~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~dg~ 249 (424)
.+. .-+|. .++.++.+|. +...|.++|+.+.+.+.....++..| ..+++. ...+|.
T Consensus 292 ~~~-~~~g~~~~~V~~g~~~G~-l~ald~~tG~~~W~~~~~~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 292 DIK-PKDGKPVPAIVHAPKNGF-FYVLDRTTGKLISARPEVEQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred ecc-ccCCCeeEEEEEECCCce-EEEEECCCCcEeeEeEeeccccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 110 01333 5777888999 99999999999877654322233333 333331 124678
Q ss_pred EEEEeCCCCCCCCeeecc-CC------CCe--EEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeeccCCcEEEEE--
Q psy3710 250 VHLVDLADPERPPLDIAA-HE------APL--SCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYLCVS-- 318 (424)
Q Consensus 250 i~i~d~~~~~~~~~~~~~-~~------~~v--~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~l~~~-- 318 (424)
+.-+|+.+++..-..-.. +. .+. ..++. .+..++.++.||. ++.+|.++|+.+.++.-.+...++-
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~-l~ald~~tG~~lW~~~~~~~~~a~P~~ 444 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGY-FRAFDATTGKELWKFRTPSGIQATPMT 444 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCe-EEEEECCCCceeeEEECCCCceEcCEE
Confidence 888998887743322111 00 111 11222 4568888899999 9999999999999887655443322
Q ss_pred -eCCCcEEEEEccccc
Q psy3710 319 -SDHGTVHVFSVDEAQ 333 (424)
Q Consensus 319 -~~d~~i~iw~~~~~~ 333 (424)
..+|+++|--...+.
T Consensus 445 ~~~~g~~yv~~~~g~~ 460 (488)
T cd00216 445 YEVNGKQYVGVMVGGG 460 (488)
T ss_pred EEeCCEEEEEEEecCC
Confidence 346777777766643
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.9e-06 Score=68.03 Aligned_cols=211 Identities=13% Similarity=0.060 Sum_probs=133.2
Q ss_pred EEEECC-CCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcE
Q psy3710 15 YAGFNQ-DQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQV 92 (424)
Q Consensus 15 ~~~~s~-~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~ 92 (424)
+++|.+ +|.++.+...++ |..|+..+++... ... .+ ...+.+...+..++++. .+.+.++|..+++.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~-~~-~~G~~~~~~~g~l~v~~--------~~~~~~~d~~~g~~ 72 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL-PG-PNGMAFDRPDGRLYVAD--------SGGIAVVDPDTGKV 72 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES-SS-EEEEEEECTTSEEEEEE--------TTCEEEEETTTTEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec-CC-CceEEEEccCCEEEEEE--------cCceEEEecCCCcE
Confidence 578888 677777776666 9999988776532 222 12 45566663335555555 24566679988866
Q ss_pred EEEEee------cCCeEEEEecCCceEEEee-----------ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCe
Q psy3710 93 VICLEF------NAPVKGVRLRRDKIVVVLE-----------GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSL 155 (424)
Q Consensus 93 ~~~~~~------~~~v~~~~~~~~~~~~~~~-----------~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (424)
...... ....+.+++.++|.+.+++ |.|..++. .++.......- .....++++|+++.
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~--~~~~~~~~~~~---~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP--DGKVTVVADGL---GFPNGIAFSPDGKT 147 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET--TSEEEEEEEEE---SSEEEEEEETTSSE
T ss_pred EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC--CCeEEEEecCc---ccccceEECCcchh
Confidence 555443 2357889999999766651 33444443 33333333222 23567899999998
Q ss_pred EEEeeccCCeEEEEeCCCCCCCCc---cc---ccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc--
Q psy3710 156 LAFPGRKSGHVHLVDLADPERPPL---DI---AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG-- 227 (424)
Q Consensus 156 l~~~~~~dg~i~i~d~~~~~~~~~---~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~-- 227 (424)
|+++-+..+.|..+++......+. .+ ....+....+++..+|+..++....+. |.++|.+ ++.+..+..+
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~-I~~~~p~-G~~~~~i~~p~~ 225 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR-IVVFDPD-GKLLREIELPVP 225 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE-EEEEETT-SCEEEEEE-SSS
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE-EEEECCC-ccEEEEEcCCCC
Confidence 876578889999999975422111 12 122234788999999988887777888 9999987 8877776644
Q ss_pred -eeeeee-cCCCCeEEEE
Q psy3710 228 -LCVLCP-NSNNSLLAFP 243 (424)
Q Consensus 228 -~~~~~~-~~~~~~~~~~ 243 (424)
...++| -++...|+++
T Consensus 226 ~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 226 RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp SEEEEEEESTTSSEEEEE
T ss_pred CEEEEEEECCCCCEEEEE
Confidence 556666 3555666654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-06 Score=69.98 Aligned_cols=182 Identities=11% Similarity=0.079 Sum_probs=114.3
Q ss_pred eccEEEEeecCCCceeEEEeeCCCCCeeE-EEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCC--eEEEEE
Q psy3710 117 EGLIKVYTFIQCPQQLHVFETNPNPKGLC-VLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAP--LSCIAL 193 (424)
Q Consensus 117 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--v~~~~~ 193 (424)
.|...+|.........+....+.....+. ..+-+ ..+ +.. ++.|.++++.+++.+ .. ....|... +.++++
T Consensus 93 ~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~-~~~-~~i-~sndht~k~~~~~~~-s~--~~~~h~~~~~~ns~~~ 166 (344)
T KOG4532|consen 93 SGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL-KFP-LNI-ASNDHTGKTMVVSGD-SN--KFAVHNQNLTQNSLHY 166 (344)
T ss_pred cceeeeecccCcccceeeecccccchhhhhhhccc-ccc-eee-ccCCcceeEEEEecC-cc--cceeeccccceeeeEE
Confidence 67888888753333333333333222111 11111 122 333 688888888888754 21 22234333 789999
Q ss_pred ccCCCEEEEEecCCcEEEEEECCCc-ce-eeEEe----cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCe----
Q psy3710 194 NQTGTRLATASYKGTLIRVFDTGSG-QK-LNELR----RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL---- 263 (424)
Q Consensus 194 ~~~~~~l~~~~~d~~~i~iwd~~~~-~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~---- 263 (424)
+++++++++.+.... |..|.+... +. +.... .+-....|+.....+++ +..||++.|||++....+..
T Consensus 167 snd~~~~~~Vgds~~-Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv-~~Qdg~~~I~DVR~~~tpm~~~ss 244 (344)
T KOG4532|consen 167 SNDPSWGSSVGDSRR-VFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAV-VFQDGTCAIYDVRNMATPMAEISS 244 (344)
T ss_pred cCCCceEEEecCCCc-ceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEE-EecCCcEEEEEecccccchhhhcc
Confidence 999999999999888 999988654 22 22122 22445566666666665 99999999999998765443
Q ss_pred eeccCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEECCCCceeee
Q psy3710 264 DIAAHEAPLSCIALNQTGT--RLATASYKGTLIRVFDTGSGQKLNE 307 (424)
Q Consensus 264 ~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~~i~iwd~~~~~~~~~ 307 (424)
.-+.|.+.+..+.|++-|. +|+..-.-+. +.+-|++++...+.
T Consensus 245 trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~-~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 245 TRPHHNGAFRVCRFSLYGLLDLLFISEHFSR-VHVVDTRNYVNHQV 289 (344)
T ss_pred cCCCCCCceEEEEecCCCcceEEEEecCcce-EEEEEcccCceeeE
Confidence 2346899999999998553 3444444444 77778777655443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.8e-06 Score=69.74 Aligned_cols=266 Identities=18% Similarity=0.216 Sum_probs=159.2
Q ss_pred eEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcC--CC-cCCCeEEEEECCCCcEEEEEeecCC--e----
Q psy3710 32 GFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTH--PK-YPNNRVMIWDDLKKQVVICLEFNAP--V---- 102 (424)
Q Consensus 32 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~--~~-~~d~~i~iwd~~~~~~~~~~~~~~~--v---- 102 (424)
.+.++|.++++.+.... .+-...+..+|+++.+.++..-.. .. -..-.|.+||..+-+...++..+.. .
T Consensus 18 rv~viD~d~~k~lGmi~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~ 95 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP 95 (342)
T ss_dssp EEEEEETTTTEEEEEEE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred eEEEEECCCCcEEEEee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence 49999988887654332 333444778899998887642100 00 0134788999999999998875432 1
Q ss_pred --EEEEecCCceEEEe-----eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCC
Q psy3710 103 --KGVRLRRDKIVVVL-----EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE 175 (424)
Q Consensus 103 --~~~~~~~~~~~~~~-----~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~ 175 (424)
..++++.|++++.. ...|.|.|+. ..+.+.++.... +..+-++.+.. +.+ -+.||.+.-..+....
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~-~~kvv~ei~~PG----C~~iyP~~~~~-F~~-lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTPATSVTVVDLA-AKKVVGEIDTPG----CWLIYPSGNRG-FSM-LCGDGSLLTVTLDADG 168 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESSSEEEEEEETT-TTEEEEEEEGTS----EEEEEEEETTE-EEE-EETTSCEEEEEETSTS
T ss_pred cccceEEccCCcEEEEEccCCCCeEEEEECC-CCceeeeecCCC----EEEEEecCCCc-eEE-EecCCceEEEEECCCC
Confidence 23567788876654 5688899986 667777766543 44555555444 444 6889999988888543
Q ss_pred CCCcc----cccccCCe-EEEEEccCCCEEEEEecCCcEEEEEECCCcceee--EE-------------ecceeeeeecC
Q psy3710 176 RPPLD----IAAHEAPL-SCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN--EL-------------RRGLCVLCPNS 235 (424)
Q Consensus 176 ~~~~~----~~~~~~~v-~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~-------------~~~~~~~~~~~ 235 (424)
+.... +..-..++ ..-++...+..++-.+..|. |+--|+....... .+ +++...+++++
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~-v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGN-VYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSE-EEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEecCCE-EEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence 43221 11112222 23344455566777788888 8888886554322 11 12345677877
Q ss_pred CCCeEEEEeec--C-------CeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCC-EEEEEe-CCCcEEEEEECCCCce
Q psy3710 236 NNSLLAFPGRK--S-------GHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT-RLATAS-YKGTLIRVFDTGSGQK 304 (424)
Q Consensus 236 ~~~~~~~~~~~--d-------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~d~~~i~iwd~~~~~~ 304 (424)
..+.+++.-.. + ..|.+||+.+.+...+. .-..++.+|+.+.+.+ +|++.+ .++. +.+||..+|+.
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri--~l~~~~~Si~Vsqd~~P~L~~~~~~~~~-l~v~D~~tGk~ 324 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARI--PLEHPIDSIAVSQDDKPLLYALSAGDGT-LDVYDAATGKL 324 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEE--EEEEEESEEEEESSSS-EEEEEETTTTE-EEEEETTT--E
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEE--eCCCccceEEEccCCCcEEEEEcCCCCe-EEEEeCcCCcE
Confidence 77666653221 1 16888888887643332 1234577888888665 555544 4677 99999999988
Q ss_pred eeeecc
Q psy3710 305 LNELRR 310 (424)
Q Consensus 305 ~~~~~~ 310 (424)
+.+...
T Consensus 325 ~~~~~~ 330 (342)
T PF06433_consen 325 VRSIEQ 330 (342)
T ss_dssp EEEE--
T ss_pred Eeehhc
Confidence 887653
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-05 Score=67.54 Aligned_cols=193 Identities=16% Similarity=0.112 Sum_probs=122.5
Q ss_pred EEEEecC-CceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeec-CCCCeEEEeeccCCeEEEEeCCCCCCC
Q psy3710 103 KGVRLRR-DKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPN-SNNSLLAFPGRKSGHVHLVDLADPERP 177 (424)
Q Consensus 103 ~~~~~~~-~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~dg~i~i~d~~~~~~~ 177 (424)
.++.|.+ ++.++.+ .+.|..|+.. . .....+.... ...+.+. +++.+++ +.. +.+.++|..++ +.
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~-~-~~~~~~~~~~----~~G~~~~~~~g~l~v--~~~-~~~~~~d~~~g-~~ 72 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPD-T-GEVEVIDLPG----PNGMAFDRPDGRLYV--ADS-GGIAVVDPDTG-KV 72 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETT-T-TEEEEEESSS----EEEEEEECTTSEEEE--EET-TCEEEEETTTT-EE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECC-C-CeEEEEecCC----CceEEEEccCCEEEE--EEc-CceEEEecCCC-cE
Confidence 3567776 6666665 5788888875 3 3333333332 3445555 5655554 444 45566688875 22
Q ss_pred Cccccc-----ccCCeEEEEEccCCCEEEEEecC--------CcEEEEEECCCcceeeEEe--cceeeeeecCCCCeEEE
Q psy3710 178 PLDIAA-----HEAPLSCIALNQTGTRLATASYK--------GTLIRVFDTGSGQKLNELR--RGLCVLCPNSNNSLLAF 242 (424)
Q Consensus 178 ~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d--------~~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 242 (424)
...... .....+.+++.|+|+..++.... +. |..++.. ++...... .....++++|+++.+++
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~-v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGS-VYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEE-EEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEE
T ss_pred EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccc-eEEECCC-CeEEEEecCcccccceEECCcchheee
Confidence 221111 34567899999999977765533 55 7777776 44333222 23577999999999999
Q ss_pred EeecCCeEEEEeCCCCCCCC---eee---ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec
Q psy3710 243 PGRKSGHVHLVDLADPERPP---LDI---AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR 309 (424)
Q Consensus 243 ~~~~dg~i~i~d~~~~~~~~---~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 309 (424)
+-+..+.|..|++....... ..+ ....+..-.++++.+|++.++.-..+. |.+++.+ |+.+..+.
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~-I~~~~p~-G~~~~~i~ 221 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR-IVVFDPD-GKLLREIE 221 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE-EEEEETT-SCEEEEEE
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE-EEEECCC-ccEEEEEc
Confidence 88999999999997544311 111 122234788999999988877777777 9999998 88777664
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.4e-07 Score=75.17 Aligned_cols=244 Identities=12% Similarity=0.098 Sum_probs=140.1
Q ss_pred CeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCC----CCCccccccc------------CCeEEEEEccCC--CEEEEE
Q psy3710 142 KGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE----RPPLDIAAHE------------APLSCIALNQTG--TRLATA 203 (424)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~----~~~~~~~~~~------------~~v~~~~~~~~~--~~l~~~ 203 (424)
..+.++.+...|.++++ |...|.|.+|.-.... +....+++|. ..|..+.|..++ ..++..
T Consensus 27 d~ItaVefd~tg~Ylat-GDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 27 DKITAVEFDETGLYLAT-GDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred ceeeEEEeccccceEee-cCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 44778889889999998 9999999999876542 2233456664 357788887654 356777
Q ss_pred ecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEE------E--EeecCCeEEEEeCCCCCCCCeee-ccCCCCeEE
Q psy3710 204 SYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLA------F--PGRKSGHVHLVDLADPERPPLDI-AAHEAPLSC 274 (424)
Q Consensus 204 ~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~ 274 (424)
+.|.+ |++|.+........-+....--.-+|-++.+. . ..-.|.-|..+ +.+.. ..|.-.|.+
T Consensus 106 tNdkt-iKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~-------p~rvyaNaH~yhiNS 177 (460)
T COG5170 106 TNDKT-IKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK-------PCRVYANAHPYHINS 177 (460)
T ss_pred cCCce-eeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec-------cceeccccceeEeee
Confidence 78898 99999865422111111000000011110000 0 00001111111 12222 378888999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEECCCCce---eee-----------------ecc-CCcEEEEEeCCCcEEEEEccccc
Q psy3710 275 IALNQTGTRLATASYKGTLIRVFDTGSGQK---LNE-----------------LRR-DSSYLCVSSDHGTVHVFSVDEAQ 333 (424)
Q Consensus 275 ~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~---~~~-----------------~~~-~~~~l~~~~~d~~i~iw~~~~~~ 333 (424)
+.|..|...++++..- . |.+|++.-... +.. |.| ....+.-.++.|.|++-|++...
T Consensus 178 iS~NsD~et~lSaDdL-r-INLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 178 ISFNSDKETLLSADDL-R-INLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeecCchheeeeccce-e-eeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 9999998888776544 4 99999874322 112 333 23566677788999999998532
Q ss_pred cccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCCcceeeee
Q psy3710 334 KINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWRDV 403 (424)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~~~~~ 403 (424)
.-...... ...+.++ -+..-+..-...+.++.|+++|+|+++-+ =-+|++||++....++.+.
T Consensus 256 lcdn~~kl-----fe~~~D~-v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi 318 (460)
T COG5170 256 LCDNSKKL-----FELTIDG-VDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred hccCchhh-----hhhccCc-ccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceee
Confidence 21110000 0000000 00111222235678899999999998655 4599999998776666644
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.7e-07 Score=82.26 Aligned_cols=162 Identities=20% Similarity=0.317 Sum_probs=121.3
Q ss_pred CCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceee--EEecceee
Q psy3710 153 NSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN--ELRRGLCV 230 (424)
Q Consensus 153 ~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~~~~~~~ 230 (424)
+++++. |..+|.|++++.+.. + .+...|... ..+|.++++|+.||+ |.|-.+-+.+... .++.++.+
T Consensus 49 ~~~~~~-GtH~g~v~~~~~~~~--~-~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~~~~~~~df~rpiks 117 (846)
T KOG2066|consen 49 DKFFAL-GTHRGAVYLTTCQGN--P-KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTDDEITQYDFKRPIKS 117 (846)
T ss_pred cceeee-ccccceEEEEecCCc--c-ccccccccc------ccCCceEEEecCCCc-EEEeeccCCccceeEecCCccee
Confidence 678888 999999999998763 3 444445443 568999999999999 9999887776554 56677899
Q ss_pred eeecCC----CCeEEEEeecCCeEEEEeCCCCCCC-CeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCcee
Q psy3710 231 LCPNSN----NSLLAFPGRKSGHVHLVDLADPERP-PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL 305 (424)
Q Consensus 231 ~~~~~~----~~~~~~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~ 305 (424)
++++|+ ....+++|+..| +.++.-+--... ...+....++|.++.|. |+++|-++.+| |++||+.+++.+
T Consensus 118 ial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G--v~vyd~~~~~~l 192 (846)
T KOG2066|consen 118 IALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG--VKVYDTPTRQRL 192 (846)
T ss_pred EEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC--cEEEecccccee
Confidence 999997 345566688888 888765533222 22355678999999995 67999999999 899999998887
Q ss_pred eeecc-----------------CCcEEEEEeCCCcEEEEEccc
Q psy3710 306 NELRR-----------------DSSYLCVSSDHGTVHVFSVDE 331 (424)
Q Consensus 306 ~~~~~-----------------~~~~l~~~~~d~~i~iw~~~~ 331 (424)
..+.| +...|+.|-. .+|+|..++.
T Consensus 193 ~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~-d~v~i~~I~~ 234 (846)
T KOG2066|consen 193 TNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG-DSVKICSIKK 234 (846)
T ss_pred eccCCCCCCCCcccCCCceEecCCCeEEEecC-CeEEEEEEec
Confidence 76542 3445665544 4788988873
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.7e-09 Score=94.41 Aligned_cols=194 Identities=12% Similarity=0.212 Sum_probs=138.0
Q ss_pred eEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCc-EE
Q psy3710 132 LHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGT-LI 210 (424)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-~i 210 (424)
..++..+. ...++++|+-+.+.|++ |+..|.|++|++.++ ........|..+|+.+.-+.+|..+++.+.-.. ..
T Consensus 1094 w~~frd~~--~~fTc~afs~~~~hL~v-G~~~Geik~~nv~sG-~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1094 WRSFRDET--ALFTCIAFSGGTNHLAV-GSHAGEIKIFNVSSG-SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred chhhhccc--cceeeEEeecCCceEEe-eeccceEEEEEccCc-cccccccccccccccccccCCcceeeeeccccCchH
Confidence 34444444 45778889999999999 999999999999998 677788999999999999999988776554322 26
Q ss_pred EEEECCC-cceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec---cCCCCeEEEEEcCCCCEEEE
Q psy3710 211 RVFDTGS-GQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA---AHEAPLSCIALNQTGTRLAT 286 (424)
Q Consensus 211 ~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~ 286 (424)
.+|++.+ +...++|... .++.|+.....-++ |+......+||+.+.......+. +....-++..|+|+.++++
T Consensus 1170 aLW~~~s~~~~~Hsf~ed-~~vkFsn~~q~r~~-gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDED-KAVKFSNSLQFRAL-GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred HHhccccccCcccccccc-ceeehhhhHHHHHh-cccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 7899864 4455555433 33344443333333 77778899999999774433222 2223337789999988776
Q ss_pred EeCCCcEEEEEECCCCceeee-----------eccCCcEEEEEeCCCcEEEEEccccccccccccce
Q psy3710 287 ASYKGTLIRVFDTGSGQKLNE-----------LRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLA 342 (424)
Q Consensus 287 ~~~d~~~i~iwd~~~~~~~~~-----------~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~ 342 (424)
.|| .+||++..+.+.. |.|+|..++.-+. |||+++.+.+...+.+.
T Consensus 1247 --ndG---vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld 1303 (1516)
T KOG1832|consen 1247 --NDG---VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD 1303 (1516)
T ss_pred --eCc---eeeeeccHHHHhhhhhheecccccccCCCceEEeech-----hhhhHHHHHHhcCcccc
Confidence 466 4899998766654 5688888887764 99999998887766543
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.9e-05 Score=73.15 Aligned_cols=247 Identities=13% Similarity=0.147 Sum_probs=142.9
Q ss_pred CCCeEEEEECCCCcEEEEEeecCC--------e-EEEEecC-CceEEEe-eccEEEEeecCCCceeEEEeeCCCC--C-e
Q psy3710 78 PNNRVMIWDDLKKQVVICLEFNAP--------V-KGVRLRR-DKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNP--K-G 143 (424)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~~~~~--------v-~~~~~~~-~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~--~-~ 143 (424)
.++.+.-.|.++|+.+.++..... + ..+.+.. +..+++. ++.|..+|.+ +++.+..+...... . .
T Consensus 69 ~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~-TG~~~W~~~~~~~~~~~~~ 147 (488)
T cd00216 69 SHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAE-TGKQVWKFGNNDQVPPGYT 147 (488)
T ss_pred CCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECC-CCCEeeeecCCCCcCcceE
Confidence 368999999999999887763221 0 1122223 3344444 8899999986 78877776554321 0 0
Q ss_pred eE-EEeecCCCCeEEEeec---------cCCeEEEEeCCCCCCCCccccccc--------------------CCe-EEEE
Q psy3710 144 LC-VLCPNSNNSLLAFPGR---------KSGHVHLVDLADPERPPLDIAAHE--------------------APL-SCIA 192 (424)
Q Consensus 144 ~~-~~~~~~~~~~l~~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~--------------------~~v-~~~~ 192 (424)
+. ...+ .+..+++ ++ .+|.+..+|..++ +.+-.+.... ..+ ...+
T Consensus 148 i~ssP~v--~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa 223 (488)
T cd00216 148 MTGAPTI--VKKLVII-GSSGAEFFACGVRGALRAYDVETG-KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPT 223 (488)
T ss_pred ecCCCEE--ECCEEEE-eccccccccCCCCcEEEEEECCCC-ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCee
Confidence 00 1111 1234444 43 3678888898886 3333322110 001 1244
Q ss_pred EccCCCEEEEEecCC------------------cEEEEEECCCcceeeEEeccee---------eeeec----CCCC--e
Q psy3710 193 LNQTGTRLATASYKG------------------TLIRVFDTGSGQKLNELRRGLC---------VLCPN----SNNS--L 239 (424)
Q Consensus 193 ~~~~~~~l~~~~~d~------------------~~i~iwd~~~~~~~~~~~~~~~---------~~~~~----~~~~--~ 239 (424)
+.+.+..++.++.++ . |.-+|..+++.+-.++.... ...+. -++. .
T Consensus 224 ~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~-l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~ 302 (488)
T cd00216 224 YDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDS-IVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVP 302 (488)
T ss_pred EeCCCCEEEEECCCCCCCccCCccCCCCCCceee-EEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeE
Confidence 455566777776554 6 89999999998877653210 00111 1222 3
Q ss_pred EEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEE------------------eCCCcEEEEEECCC
Q psy3710 240 LAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATA------------------SYKGTLIRVFDTGS 301 (424)
Q Consensus 240 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------------------~~d~~~i~iwd~~~ 301 (424)
+++.++.+|.++.+|.++++..-..-.. ...++.+| ..++.+ ..+|. +.-.|..+
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~-l~AlD~~t 375 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG-LAALDPKT 375 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceEEEccccccccCcccccCCCCCCCceE-EEEEeCCC
Confidence 5666889999999999998753321111 11123333 222221 13455 66777777
Q ss_pred Cceeeeec--------------------cCCcEEEEEeCCCcEEEEEccccccccc
Q psy3710 302 GQKLNELR--------------------RDSSYLCVSSDHGTVHVFSVDEAQKINK 337 (424)
Q Consensus 302 ~~~~~~~~--------------------~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 337 (424)
|+.+.+.. ..+..++.++.||.|+.+|.++|+.+-+
T Consensus 376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~ 431 (488)
T cd00216 376 GKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWK 431 (488)
T ss_pred CcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeE
Confidence 76665532 1346778888999999999999986543
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-06 Score=78.60 Aligned_cols=189 Identities=14% Similarity=0.059 Sum_probs=121.6
Q ss_pred CCCeeeEEEeccCceEEEEeCCcCCCcCC-CeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe----ec--cEEEE
Q psy3710 51 DGGLGHVEMLFRCNYLALVGGGTHPKYPN-NRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL----EG--LIKVY 123 (424)
Q Consensus 51 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~d-~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~--~i~v~ 123 (424)
...+..-.|++++..++...-.. .. ..+.++++++++........+.-...+|+||+..++. ++ .|.++
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~----~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFEL----GGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred CcceeccccCcCCCceEEEEEec----CCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEE
Confidence 44556678899998888775432 12 4699999999998888888888888999999977765 55 45566
Q ss_pred eecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEE
Q psy3710 124 TFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATA 203 (424)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 203 (424)
|+. .+.+..+...... -..-.|+|||+.|+.+.+..|.-.||-+.........+......-..-.|+|||++++..
T Consensus 268 dl~--~~~~~~Lt~~~gi--~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~ 343 (425)
T COG0823 268 DLD--GKNLPRLTNGFGI--NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFE 343 (425)
T ss_pred cCC--CCcceecccCCcc--ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEE
Confidence 664 3333334333322 236688999999999777777766654443323334333333333377899999999988
Q ss_pred ecCCc--EEEEEECCCcceeeEEecc--eeeeeecCCCCeEEEEeecC
Q psy3710 204 SYKGT--LIRVFDTGSGQKLNELRRG--LCVLCPNSNNSLLAFPGRKS 247 (424)
Q Consensus 204 ~~d~~--~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d 247 (424)
+..+. .|.+.|+.++...+.+... ....++.+++..+.++++..
T Consensus 344 ~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 344 SSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred eccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC
Confidence 75422 1666666665544444332 33456677777776654433
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=3e-07 Score=77.25 Aligned_cols=96 Identities=17% Similarity=0.263 Sum_probs=78.7
Q ss_pred EEEEeCCCCCCCCcccccccCCeEEEEEccCCC-EEEEEecCCcEEEEEECCCcceeeEEecc--eeeeeecCCCCeEEE
Q psy3710 166 VHLVDLADPERPPLDIAAHEAPLSCIALNQTGT-RLATASYKGTLIRVFDTGSGQKLNELRRG--LCVLCPNSNNSLLAF 242 (424)
Q Consensus 166 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 242 (424)
++..+..+. +....+..|...|.+++|+|..+ ++..++.+.. |+|.|+++...+..+..+ +...||.-+....++
T Consensus 175 v~~l~~~~f-kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nk-iki~dlet~~~vssy~a~~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDF-KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNK-IKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCc-chhhcccccchhhhhhccCccccceeeeeccCce-EEEEecccceeeeheeccCCceeeeeccCCcceeE
Confidence 555555544 34456677888999999999776 7888899999 999999999888777654 788999999999999
Q ss_pred EeecCCeEEEEeCCCCCCCCe
Q psy3710 243 PGRKSGHVHLVDLADPERPPL 263 (424)
Q Consensus 243 ~~~~dg~i~i~d~~~~~~~~~ 263 (424)
+|..+|.|.+||++..+.+..
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~ 273 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLM 273 (463)
T ss_pred EeccCceEEEEEccCCCchHh
Confidence 999999999999998765443
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.9e-08 Score=80.15 Aligned_cols=135 Identities=13% Similarity=0.282 Sum_probs=99.2
Q ss_pred EEEecCCcEEEEEECCCccee-eEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCC----CCCeeeccCCCCeEEE
Q psy3710 201 ATASYKGTLIRVFDTGSGQKL-NELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE----RPPLDIAAHEAPLSCI 275 (424)
Q Consensus 201 ~~~~~d~~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v~~~ 275 (424)
++.+.+.. |-+-|++++... ..-+.++-+..|...++ +++.|..+|.|..+|++... .+...+ -|.+.|+++
T Consensus 228 fs~G~sqq-v~L~nvetg~~qsf~sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQ-VLLTNVETGHQQSFQSKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL 304 (425)
T ss_pred ecccccce-eEEEEeecccccccccchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence 44555666 889999887432 22223344445555444 55559999999999999762 222222 689999999
Q ss_pred EEcC-CCCEEEEEeCCCcEEEEEECCCCce---eeeec--------------cCCcEEEEEeCCCcEEEEEccccccccc
Q psy3710 276 ALNQ-TGTRLATASYKGTLIRVFDTGSGQK---LNELR--------------RDSSYLCVSSDHGTVHVFSVDEAQKINK 337 (424)
Q Consensus 276 ~~~~-~~~~l~~~~~d~~~i~iwd~~~~~~---~~~~~--------------~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 337 (424)
..-. ++++|.+.+.+|+ |++||.+--++ +.++. +....+++++.|-..+||.+.+|..+..
T Consensus 305 q~Lq~s~q~LmaS~M~gk-ikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGK-IKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhccccceEeeccCcCc-eeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 8776 7889999999999 99999987766 55543 4667888899999999999999988766
Q ss_pred cc
Q psy3710 338 QS 339 (424)
Q Consensus 338 ~~ 339 (424)
.+
T Consensus 384 ip 385 (425)
T KOG2695|consen 384 IP 385 (425)
T ss_pred cC
Confidence 44
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.8e-06 Score=72.64 Aligned_cols=255 Identities=15% Similarity=0.121 Sum_probs=144.9
Q ss_pred EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCce
Q psy3710 33 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKI 112 (424)
Q Consensus 33 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (424)
++..+..+.+.......+...|..++|+|..+.|+.... -++.|+|.|+++...+..+.....+++++|..|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~as------l~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLAS------LGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDER 248 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeec------cCceEEEEecccceeeeheeccCCceeeeeccCCc
Confidence 444444444444334445668899999999986554443 36999999999999999988779999999987753
Q ss_pred EEE-e---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeec------CCCCeEEEeeccCCeEEEEeCCCCCC-CCccc
Q psy3710 113 VVV-L---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPN------SNNSLLAFPGRKSGHVHLVDLADPER-PPLDI 181 (424)
Q Consensus 113 ~~~-~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~dg~i~i~d~~~~~~-~~~~~ 181 (424)
... . .|.|.+||++.+...+..+........+..+++- +.+.+++. ... .+..|.+..... ....+
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~-~lt--~l~f~ei~~s~~~~p~vl 325 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVF-ALT--VLQFYEIVFSAECLPCVL 325 (463)
T ss_pred ceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEe-eeh--hhhhhhhhccccCCCccc
Confidence 322 2 7999999998666555554443222234444332 23444443 222 344565543211 11111
Q ss_pred c-cccCCeEEEEEccCCCEEEEEecC-Cc-----EE-EEEECCCcceeeEEecc-----------eeeeeecCCCCeEEE
Q psy3710 182 A-AHEAPLSCIALNQTGTRLATASYK-GT-----LI-RVFDTGSGQKLNELRRG-----------LCVLCPNSNNSLLAF 242 (424)
Q Consensus 182 ~-~~~~~v~~~~~~~~~~~l~~~~~d-~~-----~i-~iwd~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 242 (424)
+ +..+...++++.+-.+.++..... .. .+ ---|..+|.++...+.. .....-.+++..++.
T Consensus 326 ele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~ 405 (463)
T KOG1645|consen 326 ELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVV 405 (463)
T ss_pred ccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEE
Confidence 1 224555666666644444433221 10 00 01122233322221111 112233455677777
Q ss_pred EeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcC-C-CCEEEEEeCCCcEEEEEECC
Q psy3710 243 PGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ-T-GTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 243 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~l~~~~~d~~~i~iwd~~ 300 (424)
.|...+.+.+||..+.+.. ..+ .-+.+|.+++... + +.+|++-.+|. ++||..+
T Consensus 406 ~gd~tn~lil~D~~s~evv-Q~l-~~~epv~Dicp~~~n~~syLa~LTd~~--v~Iyk~e 461 (463)
T KOG1645|consen 406 VGDSTNELILQDPHSFEVV-QTL-ALSEPVLDICPNDTNGSSYLALLTDDR--VHIYKNE 461 (463)
T ss_pred ecCCcceeEEeccchhhee-eec-ccCcceeecceeecCCcchhhheecce--EEEEecC
Confidence 7888999999999987643 333 3447787777654 3 34666666655 7777654
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.9e-08 Score=55.72 Aligned_cols=36 Identities=36% Similarity=0.532 Sum_probs=33.5
Q ss_pred CeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEE
Q psy3710 262 PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298 (424)
Q Consensus 262 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd 298 (424)
...+.+|...|++++|+|++++|++++.|+. |++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence 4567799999999999999999999999999 99997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=9e-05 Score=71.62 Aligned_cols=272 Identities=13% Similarity=0.122 Sum_probs=151.9
Q ss_pred EEECCCCCeeEeecCCe---EEEEeCCcCcccc------cccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEE
Q psy3710 16 AGFNQDQGCFACGMEDG---FRIYNCDPLKEKE------RQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWD 86 (424)
Q Consensus 16 ~~~s~~g~~la~g~~~~---i~iw~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd 86 (424)
...+|.-..++++...+ +.++.+....... ..+..+..|.++.|..+.+.++++. ..|.|.+-|
T Consensus 24 f~l~~~~~~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~-------~~G~iilvd 96 (1265)
T KOG1920|consen 24 FILSPELVTVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLADTNSICVIT-------ALGDIILVD 96 (1265)
T ss_pred eeeccccceeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEecccceEEEEe-------cCCcEEEEc
Confidence 33445544555554443 5566554332210 1111245788899999999888888 468898888
Q ss_pred CCCCcEEEEEeecCCeEEEEecCCceEEEe-ec-cEEEEeecCCCceeEEEeeCCCC---CeeEEEeecCCCCeEEEeec
Q psy3710 87 DLKKQVVICLEFNAPVKGVRLRRDKIVVVL-EG-LIKVYTFIQCPQQLHVFETNPNP---KGLCVLCPNSNNSLLAFPGR 161 (424)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~-~i~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~ 161 (424)
.++......=.....|.+++|+||...++. .| ..-++... +..++.....+... .....+-|-.....+ -+
T Consensus 97 ~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqf---rg 172 (1265)
T KOG1920|consen 97 PETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAEKPLDADDERKSKFVNVGWGRKETQF---RG 172 (1265)
T ss_pred ccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhccccccccccccccceecccccceee---ec
Confidence 877665544446889999999999988775 33 33333322 33333222211100 001122221111111 11
Q ss_pred cCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEe----cC-CcEEEEEECCCcceeeEE---ecceeeeee
Q psy3710 162 KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS----YK-GTLIRVFDTGSGQKLNEL---RRGLCVLCP 233 (424)
Q Consensus 162 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d-~~~i~iwd~~~~~~~~~~---~~~~~~~~~ 233 (424)
..|.....+.....+.......+ +.=++|.|-.||+++++.. .+ .. |++||-+ +..-..- .+--.+++|
T Consensus 173 s~gr~~~~~~~~~ek~~~~~~~~-~~~~~IsWRgDg~~fAVs~~~~~~~~Rk-irV~drE-g~Lns~se~~~~l~~~LsW 249 (1265)
T KOG1920|consen 173 SEGRQAARQKIEKEKALEQIEQD-DHKTSISWRGDGEYFAVSFVESETGTRK-IRVYDRE-GALNSTSEPVEGLQHSLSW 249 (1265)
T ss_pred chhhhcccccccccccccchhhc-cCCceEEEccCCcEEEEEEEeccCCcee-EEEeccc-chhhcccCcccccccceee
Confidence 11222222211111111111112 2235789999999998832 23 56 9999987 4322111 122467889
Q ss_pred cCCCCeEEEEee--cCCeEEEEeCCCCCCC--CeeeccCCCCeEEEEEcCCCCEEEE---EeCCCcEEEEEECCCC
Q psy3710 234 NSNNSLLAFPGR--KSGHVHLVDLADPERP--PLDIAAHEAPLSCIALNQTGTRLAT---ASYKGTLIRVFDTGSG 302 (424)
Q Consensus 234 ~~~~~~~~~~~~--~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~---~~~d~~~i~iwd~~~~ 302 (424)
-|.|..+++... .++.|.+|..+.-+.- ...++....++..++|+.++..||. ...... |++|-+.+.
T Consensus 250 kPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~-v~lwt~~Ny 324 (1265)
T KOG1920|consen 250 KPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSL-VQLWTTGNY 324 (1265)
T ss_pred cCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccce-EEEEEecCe
Confidence 998888877543 5668999987654321 1112233445899999999999998 555556 999988764
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-08 Score=92.44 Aligned_cols=216 Identities=13% Similarity=0.123 Sum_probs=154.3
Q ss_pred ccccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeE
Q psy3710 4 GTSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 82 (424)
.....|+..-+|++|+-+.+.|++|+-.| |++|++.+|........|...++.+.-+.+++.+++.+... .--.
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S-----~Pls 1169 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS-----SPLS 1169 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecccc-----CchH
Confidence 34678899999999999999999999999 99999999999888888999999999999999888877542 3356
Q ss_pred EEEECCC-CcEEEEEeecCCeEEEEecCCc--eEEEe-eccEEEEeecCCCceeEE-EeeCC-CCCeeEEEeecCCCCeE
Q psy3710 83 MIWDDLK-KQVVICLEFNAPVKGVRLRRDK--IVVVL-EGLIKVYTFIQCPQQLHV-FETNP-NPKGLCVLCPNSNNSLL 156 (424)
Q Consensus 83 ~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~--~~~~~-~~~i~v~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~l 156 (424)
.+|++.. +...+++. .-.++.|+... ..+.+ .....+||+. +..++.+ +.... ....-....|+|+..++
T Consensus 1170 aLW~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvq-T~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQ-TCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred HHhccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecc-cCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 7898753 33333333 34567777653 34444 5678899996 5555544 22211 11112456789998887
Q ss_pred EEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEec-ceeeeeecC
Q psy3710 157 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR-GLCVLCPNS 235 (424)
Q Consensus 157 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~ 235 (424)
+- || .+||++.. +.++.|...+..+ .-.|+|.|..++.-+ .|||+++.+.++..+. .-+.+.|+.
T Consensus 1246 ln----dG--vLWDvR~~-~aIh~FD~ft~~~-~G~FHP~g~eVIINS------EIwD~RTF~lLh~VP~Ldqc~VtFNs 1311 (1516)
T KOG1832|consen 1246 LN----DG--VLWDVRIP-EAIHRFDQFTDYG-GGGFHPSGNEVIINS------EIWDMRTFKLLHSVPSLDQCAVTFNS 1311 (1516)
T ss_pred ee----Cc--eeeeeccH-HHHhhhhhheecc-cccccCCCceEEeec------hhhhhHHHHHHhcCccccceEEEecc
Confidence 64 44 57999986 6677776655333 335999999888753 6899999988877764 345566666
Q ss_pred CCCeEEE
Q psy3710 236 NNSLLAF 242 (424)
Q Consensus 236 ~~~~~~~ 242 (424)
.|..+.+
T Consensus 1312 tG~VmYa 1318 (1516)
T KOG1832|consen 1312 TGDVMYA 1318 (1516)
T ss_pred Cccchhh
Confidence 6655443
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=4e-06 Score=75.85 Aligned_cols=194 Identities=14% Similarity=0.183 Sum_probs=109.9
Q ss_pred EEEecCCceEEEe-eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCccc-
Q psy3710 104 GVRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDI- 181 (424)
Q Consensus 104 ~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~- 181 (424)
++.-+.+...+++ .|.+++|+-. +.....++.......++..+.+++..++|+ |+..|.|.++-++........+
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~--~~~~~~~~~~~~~~~~~~~~vs~~e~lvAa-gt~~g~V~v~ql~~~~p~~~~~~ 116 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRH--TGEMRKLKNEGATGITCVRSVSSVEYLVAA-GTASGRVSVFQLNKELPRDLDYV 116 (726)
T ss_pred EeecCCceEEEecccceEEEEecC--chhhhcccccCccceEEEEEecchhHhhhh-hcCCceEEeehhhccCCCcceee
Confidence 3333333344444 7899999864 333333333223344666777888888887 9999999999988743222211
Q ss_pred ----ccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCc-----ceeeEEecceeeeeecCCCCeEEEEeecCCeEEE
Q psy3710 182 ----AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG-----QKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHL 252 (424)
Q Consensus 182 ----~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i 252 (424)
..|...|++++|++++..+++|...|+ |..-.+.+. .....+..+..++.++.-...++++..... .+
T Consensus 117 t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gk-v~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~--~L 193 (726)
T KOG3621|consen 117 TPCDKSHKCRVTALEWSKNGMKLYSGDSQGK-VVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRC--IL 193 (726)
T ss_pred ccccccCCceEEEEEecccccEEeecCCCce-EEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhh--he
Confidence 237789999999999999999999999 888887762 111112223344555555555555322221 22
Q ss_pred EeCCCCCCCCeee--ccCCCC-eEEEEEcCC----CCEEEEEeCCCcEEEEEECC-CCceeee
Q psy3710 253 VDLADPERPPLDI--AAHEAP-LSCIALNQT----GTRLATASYKGTLIRVFDTG-SGQKLNE 307 (424)
Q Consensus 253 ~d~~~~~~~~~~~--~~~~~~-v~~~~~~~~----~~~l~~~~~d~~~i~iwd~~-~~~~~~~ 307 (424)
++.+... +..+ +..++. -...+|-|. .+-.+.++.-| .|+|..+ .|+.+++
T Consensus 194 c~tE~et--i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG--~RlWead~~G~V~~T 252 (726)
T KOG3621|consen 194 CQTEAET--ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG--LRLWEADFAGEVIKT 252 (726)
T ss_pred eecchhH--HHHhcCCCcCCccccceEEeeccccCCCceEEEecCC--CceEEeecceeEEEe
Confidence 2222211 1111 011121 233445443 34555666666 5888775 3554444
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00011 Score=62.33 Aligned_cols=239 Identities=14% Similarity=0.106 Sum_probs=145.5
Q ss_pred EEEECCCCCeeEee------cCCe-----EEEEeCCcCcccccccccC-------CCeeeEEEeccCceEEEEeCCcCCC
Q psy3710 15 YAGFNQDQGCFACG------MEDG-----FRIYNCDPLKEKERQDFTD-------GGLGHVEMLFRCNYLALVGGGTHPK 76 (424)
Q Consensus 15 ~~~~s~~g~~la~g------~~~~-----i~iw~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~~~~~~~ 76 (424)
.+..+|||+.+.++ ...| |.+||..+.........+. .......++.+++++++.--.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T---- 115 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT---- 115 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES----
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccC----
Confidence 36689999888753 1111 8999998876643332222 123346778888888776654
Q ss_pred cCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe-eccEEEEeecCCCceeEEEeeCCCC--CeeE-EEeecCC
Q psy3710 77 YPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNP--KGLC-VLCPNSN 152 (424)
Q Consensus 77 ~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~ 152 (424)
.-..|.|-|+..++.+.++..++...-.-..+++....+ ||.+.-..+...++..........+ ..+. .-.+...
T Consensus 116 -Pa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 116 -PATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp -SSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred -CCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 467899999999999999887776666555666654444 9999999997666655332211111 1111 1222334
Q ss_pred CCeEEEeeccCCeEEEEeCCCCCCCC-ccccc----------ccCCeEEEEEccCCCEEEEEecC---------CcEEEE
Q psy3710 153 NSLLAFPGRKSGHVHLVDLADPERPP-LDIAA----------HEAPLSCIALNQTGTRLATASYK---------GTLIRV 212 (424)
Q Consensus 153 ~~~l~~~~~~dg~i~i~d~~~~~~~~-~~~~~----------~~~~v~~~~~~~~~~~l~~~~~d---------~~~i~i 212 (424)
+..++. -+.+|.|+--|+....... ..+.. -.+.-.-+++++..+.|+..-.. ++.|.+
T Consensus 195 ~~~~~F-~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 195 GGRLYF-VSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTEEEE-EBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCeEEE-EecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 444444 5788999988887642100 01100 01233457777765555543211 113888
Q ss_pred EECCCcceeeEEec--ceeeeeecCCCCeEEEEe-ecCCeEEEEeCCCCC
Q psy3710 213 FDTGSGQKLNELRR--GLCVLCPNSNNSLLAFPG-RKSGHVHLVDLADPE 259 (424)
Q Consensus 213 wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~dg~i~i~d~~~~~ 259 (424)
+|+.+++.+.+++. ++.++.++.+..-++++. ..++.+.+||..+++
T Consensus 274 ~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 274 YDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred EECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 89999999988874 355788888888777654 457999999999976
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.2e-06 Score=78.14 Aligned_cols=206 Identities=16% Similarity=0.187 Sum_probs=134.1
Q ss_pred ceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCC-eeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC
Q psy3710 12 GLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGG-LGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK 89 (424)
Q Consensus 12 ~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~ 89 (424)
.|.| |++.+..++.|+.+| |.+.+- ..+.......+..+ +..+....+.++|++++.+..- +...++||+++.
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~--np~llkiw~lek 101 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQG--NPVLLKIWDLEK 101 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCC--CceEEEEecccc
Confidence 4444 788999999999998 888873 23332223333444 5555555666788888865311 112799999863
Q ss_pred C------cEEEE---Eee-----cCCeEEEEecCCceEEEe---eccEEEEeecCC-CceeEEEeeCCCCCeeEEEeecC
Q psy3710 90 K------QVVIC---LEF-----NAPVKGVRLRRDKIVVVL---EGLIKVYTFIQC-PQQLHVFETNPNPKGLCVLCPNS 151 (424)
Q Consensus 90 ~------~~~~~---~~~-----~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 151 (424)
- .++.. +.+ +.++.+++++.+-..++. +|.|..+.-+-. .+-.+..-.+.....++.+.+..
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS 181 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence 2 23321 221 346788999988766665 888888853211 11223333445556688889888
Q ss_pred CCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe
Q psy3710 152 NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR 225 (424)
Q Consensus 152 ~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 225 (424)
+++.++. ......|.+|.+.........+..|.....|..+++....+++++... +.+|+....++-..+.
T Consensus 182 d~~s~lF-v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~--l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 182 DGKSVLF-VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEF--LYFYDSDGRGPCFAFE 252 (933)
T ss_pred CCceeEE-EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCce--EEEEcCCCcceeeeec
Confidence 8887444 455678999999854212334777888999999998766577776655 8999998777777776
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.4e-05 Score=70.65 Aligned_cols=180 Identities=9% Similarity=-0.022 Sum_probs=113.0
Q ss_pred cCCceEEEe----eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeec--c-CCeEEEEeCCCCCCCCcc
Q psy3710 108 RRDKIVVVL----EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGR--K-SGHVHLVDLADPERPPLD 180 (424)
Q Consensus 108 ~~~~~~~~~----~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~-dg~i~i~d~~~~~~~~~~ 180 (424)
+||+..+.. .+.+.+.|.+ +.+....+.....+. .+.++++++++++++. + ..++...+.... .....
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~e-tmeV~~qV~Vdgnpd---~v~~spdGk~afvTsyNsE~G~tl~em~a~e~-d~~vv 275 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAE-TMEVAWQVMVDGNLD---NVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER-DWVVV 275 (635)
T ss_pred CCCCCEeecccceeEEEEEEECc-cceEEEEEEeCCCcc---cceECCCCCEEEEeccCcccCcceeeeccccC-ceEEE
Confidence 456644422 5677788875 566666665544332 3477889999988442 2 223333332221 00000
Q ss_pred cccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCC-----cceeeEEecc--eeeeeecCCCCeEEEEeecCCeEEEE
Q psy3710 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS-----GQKLNELRRG--LCVLCPNSNNSLLAFPGRKSGHVHLV 253 (424)
Q Consensus 181 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~dg~i~i~ 253 (424)
+.. ..+ -++.++|++...+ ++. |.+.|.++ .+.+..++.+ ...+.++|+++++++++..++++.++
T Consensus 276 fni--~~i--ea~vkdGK~~~V~--gn~-V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVI 348 (635)
T PRK02888 276 FNI--ARI--EEAVKAGKFKTIG--GSK-VPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVI 348 (635)
T ss_pred Ech--HHH--HHhhhCCCEEEEC--CCE-EEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEE
Confidence 000 000 0234577766653 566 99999998 4566666544 56789999999999999999999999
Q ss_pred eCCCCCCC-----------CeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCC
Q psy3710 254 DLADPERP-----------PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 254 d~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~ 301 (424)
|+.+.+.. .....- .......+|+++|+...|..-|.. |..||+.+
T Consensus 349 Dv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsq-v~kwn~~~ 405 (635)
T PRK02888 349 DVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQ-IVKWNIEA 405 (635)
T ss_pred EChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecce-eEEEehHH
Confidence 99875521 111111 233456789999988888888998 99999876
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00022 Score=69.15 Aligned_cols=232 Identities=14% Similarity=0.102 Sum_probs=143.9
Q ss_pred CCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEEC-
Q psy3710 10 KNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDD- 87 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~- 87 (424)
++.|.++.|-.++..+..+...| |.+-|.++..... ...-+.+|.+++|+|++..++.+++. +++.+-.-
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~-------~tll~mT~~ 139 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGR-------QTLLFMTKD 139 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCC-------cEEEEEecc
Confidence 36899999999998888887777 7777876665532 23347789999999999999999953 55554331
Q ss_pred ---CC-------------------CcEEEEEee----------------------cCCeEEEEecCCceEEEe-------
Q psy3710 88 ---LK-------------------KQVVICLEF----------------------NAPVKGVRLRRDKIVVVL------- 116 (424)
Q Consensus 88 ---~~-------------------~~~~~~~~~----------------------~~~v~~~~~~~~~~~~~~------- 116 (424)
-. |+....+.. .+.=..+.|..||.+++.
T Consensus 140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET 219 (1265)
T ss_pred ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence 00 111111110 001134889999987775
Q ss_pred e-ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEee--ccCCeEEEEeCCCCC--CCCcccccccCCeEEE
Q psy3710 117 E-GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPG--RKSGHVHLVDLADPE--RPPLDIAAHEAPLSCI 191 (424)
Q Consensus 117 ~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~ 191 (424)
+ ..|+|||-+ +.+-..-+.. ...-.+++|-|.|..+++.. ..++.|.+|.-+.-. .....+.....++..+
T Consensus 220 ~~RkirV~drE--g~Lns~se~~--~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 220 GTRKIRVYDRE--GALNSTSEPV--EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred CceeEEEeccc--chhhcccCcc--cccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence 4 689999964 2222111111 12234688999999998743 245679998866431 1122233444559999
Q ss_pred EEccCCCEEEE---EecCCcEEEEEECCCcce----eeEEecceeeeeecCCCCeEEEEeecCCeEEEEeC
Q psy3710 192 ALNQTGTRLAT---ASYKGTLIRVFDTGSGQK----LNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDL 255 (424)
Q Consensus 192 ~~~~~~~~l~~---~~~d~~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~ 255 (424)
+|+.++..|+. ...... |++|-+.+..- ...++.. ..+.|+|....-+..-..+|...++|.
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~-v~lwt~~NyhWYLKq~l~~~~~-~~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSL-VQLWTTGNYHWYLKQELQFSQK-ALLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred eecCCCCceeeeecccccce-EEEEEecCeEEEEEEEEecccc-ccccccCCCceeEEEEecCCcEEEEEE
Confidence 99999999887 555666 99999876532 2222222 225666655444443445666555554
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.9e-08 Score=55.00 Aligned_cols=37 Identities=35% Similarity=0.490 Sum_probs=34.6
Q ss_pred CCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEE
Q psy3710 177 PPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 214 (424)
Q Consensus 177 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd 214 (424)
++..+.+|.++|.+++|+|++.+|++++.|+. |++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence 45678899999999999999999999999999 99997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.5e-05 Score=70.60 Aligned_cols=198 Identities=11% Similarity=0.013 Sum_probs=121.7
Q ss_pred CCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEee-------ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecC
Q psy3710 79 NNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLE-------GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNS 151 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (424)
.+.+.+.|.++.+...++...+....+.+++++.++++. .++...+.. .......+.... + -.+.+
T Consensus 214 ~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~-e~d~~vvfni~~----i--ea~vk 286 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAA-ERDWVVVFNIAR----I--EEAVK 286 (635)
T ss_pred eEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccc-cCceEEEEchHH----H--HHhhh
Confidence 567778888888888888877788889999999777652 223333321 111111111100 0 12345
Q ss_pred CCCeEEEeeccCCeEEEEeCCC----CCCCCcccccccCCeEEEEEccCCCEEEEEec-CCcEEEEEECCCcce------
Q psy3710 152 NNSLLAFPGRKSGHVHLVDLAD----PERPPLDIAAHEAPLSCIALNQTGTRLATASY-KGTLIRVFDTGSGQK------ 220 (424)
Q Consensus 152 ~~~~l~~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~~i~iwd~~~~~~------ 220 (424)
+|++..+ + ++.|.+.|..+ + ..+...-.-......++++|||+++++++. +.+ +.+.|+.+.+.
T Consensus 287 dGK~~~V-~--gn~V~VID~~t~~~~~-~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~t-VSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 287 AGKFKTI-G--GSKVPVVDGRKAANAG-SALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPT-VTVIDVRKLDDLFDGKI 361 (635)
T ss_pred CCCEEEE-C--CCEEEEEECCccccCC-cceEEEEECCCCccceEECCCCCEEEEeCCCCCc-EEEEEChhhhhhhhccC
Confidence 7887766 3 57899999887 2 223333334566789999999999887765 666 99999988653
Q ss_pred ------eeEEecc--eeeeeecCCCCeEEEEeecCCeEEEEeCCCC------C---CCCeeeccCCCCe-----EEEEEc
Q psy3710 221 ------LNELRRG--LCVLCPNSNNSLLAFPGRKSGHVHLVDLADP------E---RPPLDIAAHEAPL-----SCIALN 278 (424)
Q Consensus 221 ------~~~~~~~--~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~------~---~~~~~~~~~~~~v-----~~~~~~ 278 (424)
..+.+.+ ....+|.++|. ...+-.-|..|..||+... + ..+..+.-|-.+- ..=.-.
T Consensus 362 ~~~~~vvaevevGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~ 440 (635)
T PRK02888 362 KPRDAVVAEPELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKE 440 (635)
T ss_pred CccceEEEeeccCCCcceEEECCCCC-EEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCC
Confidence 2333322 33456777764 5566778999999998761 1 1222232332222 222236
Q ss_pred CCCCEEEEEeC
Q psy3710 279 QTGTRLATASY 289 (424)
Q Consensus 279 ~~~~~l~~~~~ 289 (424)
|||++|++...
T Consensus 441 ~dgk~l~~~nk 451 (635)
T PRK02888 441 ADGKWLVSLNK 451 (635)
T ss_pred CCCCEEEEccc
Confidence 78999888654
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00017 Score=57.67 Aligned_cols=141 Identities=11% Similarity=0.065 Sum_probs=89.7
Q ss_pred EEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEec-CCceEEEe-eccEEEEeecCCCceeEE
Q psy3710 57 VEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLR-RDKIVVVL-EGLIKVYTFIQCPQQLHV 134 (424)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~-~~~i~v~~~~~~~~~~~~ 134 (424)
+-..++.+.++.++.- .+.+.--|..+|+.+.+......+.+-+.- .|...+.. .|.+++.+.+ ++.+...
T Consensus 16 LVV~~dskT~v~igSH------s~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~-tGs~~w~ 88 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSH------SGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVK-TGSQIWN 88 (354)
T ss_pred EEEecCCceEEEEecC------CceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEec-chhheee
Confidence 4455666666666543 488888999999998877766666654433 33344444 8999999997 7766666
Q ss_pred EeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCc
Q psy3710 135 FETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGT 208 (424)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 208 (424)
+..... ..+. ....+++..+.. |+.|++.+..|.++. ..+...+.-.+...+-+..|-...|..+...|.
T Consensus 89 f~~~~~-vk~~-a~~d~~~glIyc-gshd~~~yalD~~~~-~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~ 158 (354)
T KOG4649|consen 89 FVILET-VKVR-AQCDFDGGLIYC-GSHDGNFYALDPKTY-GCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGA 158 (354)
T ss_pred eeehhh-hccc-eEEcCCCceEEE-ecCCCcEEEeccccc-ceEEecccCCceeccceecCCCceEEEEeccce
Confidence 655432 2222 234667888888 999999999999875 555554433333334445553334444444554
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00016 Score=65.18 Aligned_cols=192 Identities=15% Similarity=0.178 Sum_probs=107.0
Q ss_pred EEEECCCCCeeEeecCC------------eEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeE
Q psy3710 15 YAGFNQDQGCFACGMED------------GFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 15 ~~~~s~~g~~la~g~~~------------~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 82 (424)
-++.+|.|.-+|...+. .|+||+.. |+.+.......+.+-.+.|..+.+.+++.. ||.+
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~--------dG~v 103 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQS--------DGTV 103 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEc--------CCEE
Confidence 35678888888877666 48888854 445444555558898999988655555444 8999
Q ss_pred EEEECCCCcEEEEEee-----c-----CCeEEEEecCCceEEEe-eccEEEEeecCCCceeEEEee-CC--C---C-Cee
Q psy3710 83 MIWDDLKKQVVICLEF-----N-----APVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFET-NP--N---P-KGL 144 (424)
Q Consensus 83 ~iwd~~~~~~~~~~~~-----~-----~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~-~~--~---~-~~~ 144 (424)
+++|+. |+. .+.. . ..+....+..+|..+.+ ++.+.+.+--........+.. .. . . ...
T Consensus 104 ~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~ 180 (410)
T PF04841_consen 104 RVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSW 180 (410)
T ss_pred EEEeCC-Cce--eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCccccccccccc
Confidence 999985 444 2221 1 12233344557766655 555544432111101111110 00 0 0 000
Q ss_pred E-EEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeE
Q psy3710 145 C-VLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE 223 (424)
Q Consensus 145 ~-~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~ 223 (424)
. ...++.+....+. ...++.+.+.+-... .. + ...+++..++.||+|++++.-..+|. +.+....-.+...+
T Consensus 181 ~~i~~l~~~~~~~i~-~~~g~~i~~i~~~~~-~~---i-~~~~~i~~iavSpng~~iAl~t~~g~-l~v~ssDf~~~~~e 253 (410)
T PF04841_consen 181 TVIPLLSSDRVVEIL-LANGETIYIIDENSF-KQ---I-DSDGPIIKIAVSPNGKFIALFTDSGN-LWVVSSDFSEKLCE 253 (410)
T ss_pred ccceEeecCcceEEE-EecCCEEEEEEcccc-cc---c-cCCCCeEEEEECCCCCEEEEEECCCC-EEEEECcccceeEE
Confidence 0 0123333444443 444556664443321 11 2 12468999999999999999999998 88887665555555
Q ss_pred Ee
Q psy3710 224 LR 225 (424)
Q Consensus 224 ~~ 225 (424)
+.
T Consensus 254 ~~ 255 (410)
T PF04841_consen 254 FD 255 (410)
T ss_pred ee
Confidence 54
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-05 Score=70.57 Aligned_cols=203 Identities=13% Similarity=0.077 Sum_probs=126.0
Q ss_pred CeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe-----e--ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecC
Q psy3710 80 NRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL-----E--GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNS 151 (424)
Q Consensus 80 ~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-----~--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (424)
..+.+-|-. |.....+. -...+..-+|+|++..++. . ..+.++++. .++......... ......|+|
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~-~g~~~~i~~~~g---~~~~P~fsp 247 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLN-TGKRPVILNFNG---NNGAPAFSP 247 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEecc-CCccceeeccCC---ccCCccCCC
Confidence 455565654 66666665 3567778899999866554 2 358888986 444333333211 123468999
Q ss_pred CCCeEEEeeccCCeEEEE--eCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCc--EEEEEECCCcceeeE-Eec
Q psy3710 152 NNSLLAFPGRKSGHVHLV--DLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGT--LIRVFDTGSGQKLNE-LRR 226 (424)
Q Consensus 152 ~~~~l~~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--~i~iwd~~~~~~~~~-~~~ 226 (424)
||+.|+.+...||...+| |+... ....+..-.+.-..-.|+|||++++..+..+. .|.+.+.+.+...+. +..
T Consensus 248 DG~~l~f~~~rdg~~~iy~~dl~~~--~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~ 325 (425)
T COG0823 248 DGSKLAFSSSRDGSPDIYLMDLDGK--NLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG 325 (425)
T ss_pred CCCEEEEEECCCCCccEEEEcCCCC--cceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC
Confidence 999999988888876655 55553 33334433444447789999999987765432 267777766654222 222
Q ss_pred c-eeeeeecCCCCeEEEEeecCCe--EEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCC
Q psy3710 227 G-LCVLCPNSNNSLLAFPGRKSGH--VHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKG 291 (424)
Q Consensus 227 ~-~~~~~~~~~~~~~~~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 291 (424)
. -..-.++|+|..+++....+|. |.+.|+.++.. .+.+ .+........|.|+++.+...+..+
T Consensus 326 ~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~l-t~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 326 GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRIL-TSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEc-cccccCCCCCcCCCCceEEEeccCC
Confidence 2 2366789999999998866666 66666665543 2211 3334444557778887766655443
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.3e-07 Score=73.85 Aligned_cols=166 Identities=12% Similarity=0.123 Sum_probs=117.7
Q ss_pred EECCC--CCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCC----
Q psy3710 17 GFNQD--QGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKK---- 90 (424)
Q Consensus 17 ~~s~~--g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~---- 90 (424)
+|+-+ |..+++|.+.++-+-|++++...... ..+.|.+..|.-.++.+.... ..|.|...|++.+
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qsf~--sksDVfAlQf~~s~nLv~~Gc-------RngeI~~iDLR~rnqG~ 288 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQSFQ--SKSDVFALQFAGSDNLVFNGC-------RNGEIFVIDLRCRNQGN 288 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccccc--cchhHHHHHhcccCCeeEecc-------cCCcEEEEEeeecccCC
Confidence 55533 45567888888999999988764333 366787788877666665444 3699999998753
Q ss_pred -cEEEEEeecCCeEEEEecC-Cc-eEEEe--eccEEEEeecCCCce---eEEEeeCCCCCeeEEEeecCCCCeEEEeecc
Q psy3710 91 -QVVICLEFNAPVKGVRLRR-DK-IVVVL--EGLIKVYTFIQCPQQ---LHVFETNPNPKGLCVLCPNSNNSLLAFPGRK 162 (424)
Q Consensus 91 -~~~~~~~~~~~v~~~~~~~-~~-~~~~~--~~~i~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (424)
.+...+-|...|+++..-. ++ .++++ +|.|++||.+ ..+. +..+++|.+...-.-+...++...+++ ++.
T Consensus 289 ~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R-~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s-~Gd 366 (425)
T KOG2695|consen 289 GWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR-ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFS-VGD 366 (425)
T ss_pred CcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeeh-hhhcccceeeeecccccccccccccccccceEEE-ccC
Confidence 5667777999999988765 44 44455 8999999997 4444 788888877655555667778888887 999
Q ss_pred CCeEEEEeCCCCCCCCcccc----cccCCeEEEEEc
Q psy3710 163 SGHVHLVDLADPERPPLDIA----AHEAPLSCIALN 194 (424)
Q Consensus 163 dg~i~i~d~~~~~~~~~~~~----~~~~~v~~~~~~ 194 (424)
|-..+||.++.+ ..+.++. .....+.+++|.
T Consensus 367 DcytRiWsl~~g-hLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 367 DCYTRIWSLDSG-HLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred eeEEEEEecccC-ceeeccCCCCccccccccceehh
Confidence 999999999986 4444333 222344555554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.5e-06 Score=73.22 Aligned_cols=223 Identities=12% Similarity=0.111 Sum_probs=111.0
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEE
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIW 85 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iw 85 (424)
+....-....+.++|+|+++++++++...||.....+... .+.-....|..+++ .|+.. ..++|.|+
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~-yAv~~-------~~~~I~I~ 94 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNR-YAVLE-------SSSTIKIY 94 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSE-EEEE--------TTS-EEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----cCceeEEEEecCcc-EEEEE-------CCCeEEEE
Confidence 3344556788999999999999877778888733332221 23344577887444 55555 25789997
Q ss_pred ECCCCcEEEEEeecCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccC
Q psy3710 86 DDLKKQVVICLEFNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKS 163 (424)
Q Consensus 86 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d 163 (424)
.--+.+..+.+..+..+..+-. |.+++. ++.|.+||+. +++.+..+.... +..+.|++++.+++. .+.
T Consensus 95 kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~-~~~~i~~i~v~~----vk~V~Ws~~g~~val-~t~- 164 (443)
T PF04053_consen 95 KNFKNEVVKSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWE-TGKLIRRIDVSA----VKYVIWSDDGELVAL-VTK- 164 (443)
T ss_dssp ETTEE-TT-----SS-EEEEE----SSSEEEEETTEEEEE-TT-T--EEEEESS-E-----EEEEE-TTSSEEEE-E-S-
T ss_pred EcCccccceEEcCCcccceEEc---CcEEEEECCCCEEEEEhh-HcceeeEEecCC----CcEEEEECCCCEEEE-EeC-
Confidence 4333333334444444444444 544443 5569999996 778888776442 678899999999998 543
Q ss_pred CeEEEEeCCCC------C----CCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeee
Q psy3710 164 GHVHLVDLADP------E----RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCP 233 (424)
Q Consensus 164 g~i~i~d~~~~------~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~ 233 (424)
..+.+++.+.. . .....+..-...|.+..|..+ .++-.... . ++.+--.....+..+..+...+..
T Consensus 165 ~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~-lkYl~~Ge~~~i~~ld~~~yllgy 240 (443)
T PF04053_consen 165 DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-H-LKYLVNGETGIIAHLDKPLYLLGY 240 (443)
T ss_dssp -SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-E-EEEEETTEEEEEEE-SS--EEEEE
T ss_pred CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-e-EEEEEcCCcceEEEcCCceEEEEE
Confidence 46666664431 0 012222222567888888765 44444444 4 666433333445555556666666
Q ss_pred cCCCCeEEEEeecCCeEEEEeCC
Q psy3710 234 NSNNSLLAFPGRKSGHVHLVDLA 256 (424)
Q Consensus 234 ~~~~~~~~~~~~~dg~i~i~d~~ 256 (424)
.+..+.+++ ...++.+..+.+.
T Consensus 241 ~~~~~~ly~-~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 241 LPKENRLYL-IDRDGNVISYELD 262 (443)
T ss_dssp ETTTTEEEE-E-TT--EEEEE--
T ss_pred EccCCEEEE-EECCCCEEEEEEC
Confidence 665444443 5555666555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00022 Score=63.27 Aligned_cols=263 Identities=13% Similarity=0.074 Sum_probs=137.6
Q ss_pred CCceEEEEECCCCCeeEeecCCeEEEEeCCcCccccccc-c---------------c-CCCeeeEEEeccCceEEEEeCC
Q psy3710 10 KNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQD-F---------------T-DGGLGHVEMLFRCNYLALVGGG 72 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~-~---------------~-~~~i~~~~~~~~~~~l~~~~~~ 72 (424)
...+....|||+|+.+|...++.|.+++..+++...... . . -+.-..+-|+|++++|++..-.
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred ccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 566888999999999999998889999976664422111 1 0 1234568899999999988743
Q ss_pred cCCCcCCCeEEEEEC---CCCcEEEEEeecCCeEEEEecCCceEEEeeccEEEEeecCCCceeE-EEe--eCCCCCeeEE
Q psy3710 73 THPKYPNNRVMIWDD---LKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLH-VFE--TNPNPKGLCV 146 (424)
Q Consensus 73 ~~~~~~d~~i~iwd~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~-~~~--~~~~~~~~~~ 146 (424)
+..+..+.+ ..... .-..+..+.+-.-|.-- ..-.+.|+++. +++... ... .......+..
T Consensus 122 ------~~~v~~~~~~~~~~~~~-----~yp~~~~~~YPk~G~~n-p~v~l~v~~~~-~~~~~~~~~~~~~~~~~~yl~~ 188 (353)
T PF00930_consen 122 ------EREVPEYPLPDYSPPDS-----QYPEVESIRYPKAGDPN-PRVSLFVVDLA-SGKTTELDPPNSLNPQDYYLTR 188 (353)
T ss_dssp -------TTS-EEEEEEESSSTE-----SS-EEEEEE--BTTS----EEEEEEEESS-STCCCEE---HHHHTSSEEEEE
T ss_pred ------CcCCceEEeeccCCccc-----cCCcccccccCCCCCcC-CceEEEEEECC-CCcEEEeeeccccCCCccCccc
Confidence 344433321 11110 00012233322111110 12356677875 443321 111 1233455778
Q ss_pred EeecCCCCeEEE-eeccC---CeEEEEeCCCCCCCCcccccccCCe---EEEEEc-cCCCEEE-EEecCCc-EEEEEECC
Q psy3710 147 LCPNSNNSLLAF-PGRKS---GHVHLVDLADPERPPLDIAAHEAPL---SCIALN-QTGTRLA-TASYKGT-LIRVFDTG 216 (424)
Q Consensus 147 ~~~~~~~~~l~~-~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~l~-~~~~d~~-~i~iwd~~ 216 (424)
+.|.++++.+++ ....+ -.+.++|..++......-....+.| ....|. +++..++ ....+|- .|.+++..
T Consensus 189 v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~ 268 (353)
T PF00930_consen 189 VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD 268 (353)
T ss_dssp EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT
T ss_pred ceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc
Confidence 899999884433 23322 3456677766422211111222222 355554 6665444 4445554 26666776
Q ss_pred CcceeeEEecc---e-eeeeecCCCCeEEEEeecCC----eEEEEeCC-CCCCCCeeeccCCCCeEEEEEcCCCCEEEEE
Q psy3710 217 SGQKLNELRRG---L-CVLCPNSNNSLLAFPGRKSG----HVHLVDLA-DPERPPLDIAAHEAPLSCIALNQTGTRLATA 287 (424)
Q Consensus 217 ~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~dg----~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 287 (424)
.+... .+..+ + ..+.+++.++.+.+++..++ .++..++. .+. ...+......-..+.|||++++++-.
T Consensus 269 ~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~--~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 269 GGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE--PKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp SSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE--EEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred cccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC--eEeccCCCCCceEEEECCCCCEEEEE
Confidence 66533 33332 3 45788899999988887633 56666666 322 23333333222689999999987654
Q ss_pred e
Q psy3710 288 S 288 (424)
Q Consensus 288 ~ 288 (424)
.
T Consensus 346 ~ 346 (353)
T PF00930_consen 346 Y 346 (353)
T ss_dssp E
T ss_pred E
Confidence 4
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.3e-05 Score=60.32 Aligned_cols=239 Identities=16% Similarity=0.138 Sum_probs=142.4
Q ss_pred CCCcEEEEEeecCCeEEEEecCCce-EEEe----eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeec-
Q psy3710 88 LKKQVVICLEFNAPVKGVRLRRDKI-VVVL----EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGR- 161 (424)
Q Consensus 88 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~----~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 161 (424)
+.|+++.....+..-..++++|... .++. .....++|.. ..+...++....+....-.=.|||||.+|..+-.
T Consensus 56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~-~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd 134 (366)
T COG3490 56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPN-GAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND 134 (366)
T ss_pred cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCC-CCcCcEEEecccCceeecccccCCCCcEEEeecCC
Confidence 4678888777888888999998763 3333 3456788885 4555444443333222223368999999986321
Q ss_pred ---cCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecC------------------CcEEEEEECCCcce
Q psy3710 162 ---KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK------------------GTLIRVFDTGSGQK 220 (424)
Q Consensus 162 ---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------------~~~i~iwd~~~~~~ 220 (424)
.-|.|-+||.+.+.+.+-++..|.-.-..+.+.+||+.++.+... -. +.+.|..++..
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePS-lvlld~atG~l 213 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPS-LVLLDAATGNL 213 (366)
T ss_pred CCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCcc-EEEEeccccch
Confidence 237899999997766777888888788899999999998876421 11 23334334433
Q ss_pred eeEEecc-------eeeeeecCCCCeEEEEeecCCe----EEEEeCCCCCCCCeee-------ccCCCCeEEEEEcCCCC
Q psy3710 221 LNELRRG-------LCVLCPNSNNSLLAFPGRKSGH----VHLVDLADPERPPLDI-------AAHEAPLSCIALNQTGT 282 (424)
Q Consensus 221 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~dg~----i~i~d~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~ 282 (424)
+.+...+ +..+...+++...+.+ ...|. --+.-...+..+...+ ......|-+++.+.+..
T Consensus 214 iekh~Lp~~l~~lSiRHld~g~dgtvwfgc-Qy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~g 292 (366)
T COG3490 214 IEKHTLPASLRQLSIRHLDIGRDGTVWFGC-QYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDG 292 (366)
T ss_pred hhhccCchhhhhcceeeeeeCCCCcEEEEE-EeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCC
Confidence 3222111 3444555555544432 11110 0000001111111111 12234577888887777
Q ss_pred EEEEEeCCCcEEEEEECCCCceeeeec--------cCCcEEEEEeCCCcEEEEEc
Q psy3710 283 RLATASYKGTLIRVFDTGSGQKLNELR--------RDSSYLCVSSDHGTVHVFSV 329 (424)
Q Consensus 283 ~l~~~~~d~~~i~iwd~~~~~~~~~~~--------~~~~~l~~~~~d~~i~iw~~ 329 (424)
+++..+..|+...+||..+|..+..-. +...=++..+.+|.+.++.-
T Consensus 293 lV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 293 LVALTSPRGNRAVIWDAATGAVVSEAALPDAAGVAAAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred eEEEecCCCCeEEEEEcCCCcEEecccccccccceeccCceEEecCCceEEeccc
Confidence 888888877768999999999877532 23344555667888888743
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00036 Score=55.94 Aligned_cols=188 Identities=12% Similarity=0.029 Sum_probs=103.3
Q ss_pred CCC-CeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe
Q psy3710 20 QDQ-GCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE 97 (424)
Q Consensus 20 ~~g-~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 97 (424)
+|. .++..|+-.+ +.--|..++........ ...+.+-++. -+++++... ..+.+++.+.++|+....+.
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GC-------y~g~lYfl~~~tGs~~w~f~ 90 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGC-------YSGGLYFLCVKTGSQIWNFV 90 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEE-------ccCcEEEEEecchhheeeee
Confidence 443 5666788777 78888888887654444 4455444444 466665555 46899999999999888888
Q ss_pred ecCCeEEE-EecCCc--eEEEe-eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCC
Q psy3710 98 FNAPVKGV-RLRRDK--IVVVL-EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLAD 173 (424)
Q Consensus 98 ~~~~v~~~-~~~~~~--~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~ 173 (424)
..+.|.+- ...+++ .+..+ |++.+..|.+ +...+...+..... ....+..|-...|.+ +...|.+.--..+.
T Consensus 91 ~~~~vk~~a~~d~~~glIycgshd~~~yalD~~-~~~cVykskcgG~~--f~sP~i~~g~~sly~-a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 91 ILETVKVRAQCDFDGGLIYCGSHDGNFYALDPK-TYGCVYKSKCGGGT--FVSPVIAPGDGSLYA-AITAGAVLAVTKNP 166 (354)
T ss_pred ehhhhccceEEcCCCceEEEecCCCcEEEeccc-ccceEEecccCCce--eccceecCCCceEEE-EeccceEEEEccCC
Confidence 65555432 233444 44444 9999999987 56666655443321 223344452233333 45555554444433
Q ss_pred CCCCCcccccc--cCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe
Q psy3710 174 PERPPLDIAAH--EAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR 225 (424)
Q Consensus 174 ~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 225 (424)
. +...+-.| .++|.+--.. -+..+..+.-||. +.-+| +.|+.+.++.
T Consensus 167 ~--~~~~~w~~~~~~PiF~splc-v~~sv~i~~VdG~-l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 167 Y--SSTEFWAATRFGPIFASPLC-VGSSVIITTVDGV-LTSFD-ESGRQVWRPA 215 (354)
T ss_pred C--CcceehhhhcCCccccCcee-ccceEEEEEeccE-EEEEc-CCCcEEEeec
Confidence 2 22222222 2333211000 1234455556666 66666 4555555443
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0015 Score=60.96 Aligned_cols=252 Identities=11% Similarity=0.078 Sum_probs=146.8
Q ss_pred CCeEEEEECCCCcEEEEEeecC--CeE----------EEEecCCceEEEe-eccEEEEeecCCCceeEEEeeCCCCC--e
Q psy3710 79 NNRVMIWDDLKKQVVICLEFNA--PVK----------GVRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNPK--G 143 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~~~~--~v~----------~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~--~ 143 (424)
++.|.-.|.++|+.+.++.... .+. .+++..+..++.+ ++.+.-+|.+ +++.+.......... .
T Consensus 78 ~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~-TGk~~W~~~~~~~~~~~~ 156 (527)
T TIGR03075 78 YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAK-TGKVVWSKKNGDYKAGYT 156 (527)
T ss_pred CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECC-CCCEEeeccccccccccc
Confidence 6789999999999998876321 111 1233334444444 8889999986 777776654322110 1
Q ss_pred eEE-EeecCCCCeEEEeec------cCCeEEEEeCCCCCCCCccccc------------------------------c-c
Q psy3710 144 LCV-LCPNSNNSLLAFPGR------KSGHVHLVDLADPERPPLDIAA------------------------------H-E 185 (424)
Q Consensus 144 ~~~-~~~~~~~~~l~~~~~------~dg~i~i~d~~~~~~~~~~~~~------------------------------~-~ 185 (424)
+.+ .... ++ .+++ +. .+|.|.-+|.++++ .+-.+.. + .
T Consensus 157 ~tssP~v~-~g-~Viv-g~~~~~~~~~G~v~AlD~~TG~-~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg 232 (527)
T TIGR03075 157 ITAAPLVV-KG-KVIT-GISGGEFGVRGYVTAYDAKTGK-LVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGG 232 (527)
T ss_pred ccCCcEEE-CC-EEEE-eecccccCCCcEEEEEECCCCc-eeEeccCcCCCcccccccccccccccccCCCCCCccccCC
Confidence 110 0111 34 3444 33 26889988888763 2221110 0 0
Q ss_pred CCeE-EEEEccCCCEEEEEecC-----C-----------cEEEEEECCCcceeeEEecc------------eeeeeecCC
Q psy3710 186 APLS-CIALNQTGTRLATASYK-----G-----------TLIRVFDTGSGQKLNELRRG------------LCVLCPNSN 236 (424)
Q Consensus 186 ~~v~-~~~~~~~~~~l~~~~~d-----~-----------~~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~ 236 (424)
..+. .+++.|...+++.+... + . |.-.|+++|+..-.++.- ...+.+..+
T Consensus 233 ~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s-~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~ 311 (527)
T TIGR03075 233 GATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSS-IVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKD 311 (527)
T ss_pred CCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCcccee-EEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccC
Confidence 1111 34566655566555421 1 4 778899999988766531 122223345
Q ss_pred CC--eEEEEeecCCeEEEEeCCCCCCCCe-------ee----ccCC-CCe----------------------------EE
Q psy3710 237 NS--LLAFPGRKSGHVHLVDLADPERPPL-------DI----AAHE-APL----------------------------SC 274 (424)
Q Consensus 237 ~~--~~~~~~~~dg~i~i~d~~~~~~~~~-------~~----~~~~-~~v----------------------------~~ 274 (424)
++ .+++.+..+|.+++.|.++++.... .. .... .++ ..
T Consensus 312 G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~ 391 (527)
T TIGR03075 312 GKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQP 391 (527)
T ss_pred CcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCC
Confidence 55 5777799999999999998764200 00 0000 000 12
Q ss_pred EEEcCCCCEEEEEeCC---------------------------------CcEEEEEECCCCceeeeec-----------c
Q psy3710 275 IALNQTGTRLATASYK---------------------------------GTLIRVFDTGSGQKLNELR-----------R 310 (424)
Q Consensus 275 ~~~~~~~~~l~~~~~d---------------------------------~~~i~iwd~~~~~~~~~~~-----------~ 310 (424)
++++|+..+++....+ +. |.-+|+.+|+.+.+.. -
T Consensus 392 ~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~-l~AiD~~tGk~~W~~~~~~p~~~~~l~t 470 (527)
T TIGR03075 392 MAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGS-LIAWDPITGKIVWEHKEDFPLWGGVLAT 470 (527)
T ss_pred ceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCcee-EEEEeCCCCceeeEecCCCCCCCcceEE
Confidence 5666655554433322 45 8888999998888653 1
Q ss_pred CCcEEEEEeCCCcEEEEEccccccccc
Q psy3710 311 DSSYLCVSSDHGTVHVFSVDEAQKINK 337 (424)
Q Consensus 311 ~~~~l~~~~~d~~i~iw~~~~~~~~~~ 337 (424)
.+.+++.++.+|.++.+|.++|+.+-+
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~ 497 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWK 497 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEE
Confidence 455677788899999999999987643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00056 Score=59.23 Aligned_cols=224 Identities=12% Similarity=0.026 Sum_probs=104.7
Q ss_pred EEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeec-CCeEEEEecCCceEEEe---eccEEEEeecCCCcee
Q psy3710 57 VEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFN-APVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQL 132 (424)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~ 132 (424)
-+|..+++.|++++... ....+.+.|+++++..+..... .......++++...+.. +..+.-.|++ +.+..
T Consensus 41 ~~ft~dG~kllF~s~~d----g~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~-T~e~~ 115 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFD----GNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLD-TLEER 115 (386)
T ss_dssp --B-TTS-EEEEEE-TT----SS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETT-T--EE
T ss_pred CCcCCCCCEEEEEeccC----CCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECC-cCcEE
Confidence 45778899998887532 3578888999998887766543 22334556676655543 4478888886 55544
Q ss_pred EEEeeCCCCCeeEEEeecCCCCeEEEeec---------------------cCCeEEEEeCCCCCCCCcccccccCCeEEE
Q psy3710 133 HVFETNPNPKGLCVLCPNSNNSLLAFPGR---------------------KSGHVHLVDLADPERPPLDIAAHEAPLSCI 191 (424)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 191 (424)
..+.....-.+......+.|+..++-.-. -...|...|+.++ ....+..-...+..+
T Consensus 116 ~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG--~~~~v~~~~~wlgH~ 193 (386)
T PF14583_consen 116 VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG--ERKVVFEDTDWLGHV 193 (386)
T ss_dssp EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-EEEE
T ss_pred EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC--ceeEEEecCccccCc
Confidence 45555554443334445667776653110 1233455566654 334444456677889
Q ss_pred EEccCCC-EEEEEec---CCcEEEEEECCC-cceeeEEe---cc--eeeeeecCCCCeEEEEee----cCCeEEEEeCCC
Q psy3710 192 ALNQTGT-RLATASY---KGTLIRVFDTGS-GQKLNELR---RG--LCVLCPNSNNSLLAFPGR----KSGHVHLVDLAD 257 (424)
Q Consensus 192 ~~~~~~~-~l~~~~~---d~~~i~iwd~~~-~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~----~dg~i~i~d~~~ 257 (424)
.|+|... .|+.|-+ +..--|||-+++ +.....+. .. ..---|.++|..+.+-+. .+..|.-+|+.+
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT 273 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC
Confidence 9999554 4444432 110024554332 22222221 11 333467889988887443 234577778877
Q ss_pred CCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCC
Q psy3710 258 PERPPLDIAAHEAPLSCIALNQTGTRLATASYK 290 (424)
Q Consensus 258 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 290 (424)
++... + .....-....-++||++++-=+.|
T Consensus 274 ~~~~~--~-~~~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 274 GERRR--L-MEMPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp --EEE--E-EEE-SEEEEEE-TTSSEEEEEE--
T ss_pred CCceE--E-EeCCceeeeEEcCCCCEEEecCCC
Confidence 65321 1 111234455567888877665544
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.9e-06 Score=76.39 Aligned_cols=104 Identities=15% Similarity=0.249 Sum_probs=79.0
Q ss_pred EEecCCceEEEe-------eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCC
Q psy3710 105 VRLRRDKIVVVL-------EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERP 177 (424)
Q Consensus 105 ~~~~~~~~~~~~-------~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~ 177 (424)
..|+|...+++. .|.|.||-- ++++..... .|..+.+++|+|..-.|+. |-.-|.+.+|...+. +.
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfad--tGEPqr~Vt---~P~hatSLCWHpe~~vLa~-gwe~g~~~v~~~~~~-e~ 93 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFAD--TGEPQRDVT---YPVHATSLCWHPEEFVLAQ-GWEMGVSDVQKTNTT-ET 93 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEec--CCCCCcccc---cceehhhhccChHHHHHhh-ccccceeEEEecCCc-ee
Confidence 345666544432 678888863 455443322 2345677999999888887 999999999998874 44
Q ss_pred CcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECC
Q psy3710 178 PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 216 (424)
Q Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 216 (424)
......|..+|..+.|+++|..++++..-|. +.+|...
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~-v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGS-VHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCce-eEEEEee
Confidence 4556689999999999999999999999999 9999775
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00031 Score=65.62 Aligned_cols=207 Identities=13% Similarity=0.180 Sum_probs=133.8
Q ss_pred eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCC-CeEEEeeccCC----eEEEEeCCCCCCC--Cc-----cccc-
Q psy3710 117 EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNN-SLLAFPGRKSG----HVHLVDLADPERP--PL-----DIAA- 183 (424)
Q Consensus 117 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~dg----~i~i~d~~~~~~~--~~-----~~~~- 183 (424)
+|.|.+++- ..+.++.++.+... +..+-+.-++ .+|++.|-.++ .+++|+++..++. .. .+..
T Consensus 44 ~G~V~~Ln~--s~~~~~~fqa~~~s--iv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~ 119 (933)
T KOG2114|consen 44 DGRVVILNS--SFQLIRGFQAYEQS--IVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTI 119 (933)
T ss_pred cccEEEecc--cceeeehheecchh--hhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeecc
Confidence 777777663 45555777777654 2233333344 56665343333 6999999754111 11 1112
Q ss_pred ----ccCCeEEEEEccCCCEEEEEecCCcEEEEEECC--C--c-cee--eEEecceeeeeecCCCCeEEEEeecCCeEEE
Q psy3710 184 ----HEAPLSCIALNQTGTRLATASYKGTLIRVFDTG--S--G-QKL--NELRRGLCVLCPNSNNSLLAFPGRKSGHVHL 252 (424)
Q Consensus 184 ----~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~--~--~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i 252 (424)
...++.+++.+.+-+.+++|-.+|. |..+.-. . + +.. ...+.+++.+++..++...++ ......|.+
T Consensus 120 ~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~-V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF-v~Tt~~V~~ 197 (933)
T KOG2114|consen 120 KNPTNPSPASSLAVSEDLKTIVCGFTNGL-VICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF-VATTEQVML 197 (933)
T ss_pred CCCCCCCcceEEEEEccccEEEEEecCcE-EEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE-EEecceeEE
Confidence 3567889999999899999999998 8777421 1 1 111 112345788888888887544 345668899
Q ss_pred EeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeeccCCcEEEEEeCCCcEEEEEccc
Q psy3710 253 VDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYLCVSSDHGTVHVFSVDE 331 (424)
Q Consensus 253 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 331 (424)
|.+.........+..|...+.|..+++....+++++... +.+|+......-.+|..+++.......-|.+-+.-.+.
T Consensus 198 y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~--l~fY~sd~~~~cfaf~~g~kk~~~~~~~g~~L~v~~~~ 274 (933)
T KOG2114|consen 198 YSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEF--LYFYDSDGRGPCFAFEVGEKKEMLVFSFGLLLCVTTDK 274 (933)
T ss_pred EEecCCCcceeeeccCCccceeeecCCCCccEEEecCce--EEEEcCCCcceeeeecCCCeEEEEEEecCEEEEEEccC
Confidence 999855433445778899999999998766577777666 89999998888888886666655555544544444443
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0011 Score=58.19 Aligned_cols=179 Identities=11% Similarity=0.175 Sum_probs=106.7
Q ss_pred EEEEeCCcCccccccccc-CCCeeeEEEec-c------CceEEEEeCCc---CCCcCCCeEEEEECCCC-----cE--EE
Q psy3710 33 FRIYNCDPLKEKERQDFT-DGGLGHVEMLF-R------CNYLALVGGGT---HPKYPNNRVMIWDDLKK-----QV--VI 94 (424)
Q Consensus 33 i~iw~~~~~~~~~~~~~~-~~~i~~~~~~~-~------~~~l~~~~~~~---~~~~~d~~i~iwd~~~~-----~~--~~ 94 (424)
|++.|..+.+.+....+. .+.+.+++... . ..++++.++-. .+....|.|.++++.+. +. +.
T Consensus 4 i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~ 83 (321)
T PF03178_consen 4 IRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH 83 (321)
T ss_dssp EEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE
T ss_pred EEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE
Confidence 788888777766555542 23344333322 2 34555444311 11112389999999874 22 23
Q ss_pred EEeecCCeEEEEecCCceEEEeeccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCC
Q psy3710 95 CLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADP 174 (424)
Q Consensus 95 ~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~ 174 (424)
....+++|.+++--.+..+++.++.|.+|++... +.+........+..+.++... +.++++ |.....+.++..+..
T Consensus 84 ~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~-~~l~~~~~~~~~~~i~sl~~~--~~~I~v-gD~~~sv~~~~~~~~ 159 (321)
T PF03178_consen 84 STEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNS-KTLLKKAFYDSPFYITSLSVF--KNYILV-GDAMKSVSLLRYDEE 159 (321)
T ss_dssp EEEESS-EEEEEEETTEEEEEETTEEEEEEEETT-SSEEEEEEE-BSSSEEEEEEE--TTEEEE-EESSSSEEEEEEETT
T ss_pred EEeecCcceEhhhhCCEEEEeecCEEEEEEccCc-ccchhhheecceEEEEEEecc--ccEEEE-EEcccCEEEEEEEcc
Confidence 3346899999998866655555999999999743 323333333333445555544 558887 888888888865542
Q ss_pred CCCCcccc--cccCCeEEEEEccCCCEEEEEecCCcEEEEEECC
Q psy3710 175 ERPPLDIA--AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 216 (424)
Q Consensus 175 ~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 216 (424)
......+. .....++++.|-++++.++.+..+|. +.++...
T Consensus 160 ~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn-l~~l~~~ 202 (321)
T PF03178_consen 160 NNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN-LFVLRYN 202 (321)
T ss_dssp TE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE-EEEEEE-
T ss_pred CCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe-EEEEEEC
Confidence 12222222 23455888888877679999999999 9998775
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00017 Score=65.03 Aligned_cols=139 Identities=12% Similarity=0.113 Sum_probs=79.6
Q ss_pred CeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe--eccEEEEe-ecCCC
Q psy3710 53 GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL--EGLIKVYT-FIQCP 129 (424)
Q Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~i~v~~-~~~~~ 129 (424)
....++.+|+++.+++++ |+.-.|+.....+... .+.-....|.+.+.+.+. .+.|.++. ++ .
T Consensus 34 ~p~~ls~npngr~v~V~g--------~geY~iyt~~~~r~k~----~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~--~ 99 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCG--------DGEYEIYTALAWRNKA----FGSGLSFVWSSRNRYAVLESSSTIKIYKNFK--N 99 (443)
T ss_dssp --SEEEE-TTSSEEEEEE--------TTEEEEEETTTTEEEE----EEE-SEEEE-TSSEEEEE-TTS-EEEEETTE--E
T ss_pred CCeeEEECCCCCEEEEEc--------CCEEEEEEccCCcccc----cCceeEEEEecCccEEEEECCCeEEEEEcCc--c
Confidence 456789999999999977 7888888844333322 234456778887776666 57888863 32 2
Q ss_pred ceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcE
Q psy3710 130 QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTL 209 (424)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~ 209 (424)
.....++... .+-.+-. |.+|.. . .++.|.+||+.++ +.+..+... +|..+.|+++|++++..+.+.
T Consensus 100 ~~~k~i~~~~---~~~~If~---G~LL~~-~-~~~~i~~yDw~~~-~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~-- 166 (443)
T PF04053_consen 100 EVVKSIKLPF---SVEKIFG---GNLLGV-K-SSDFICFYDWETG-KLIRRIDVS--AVKYVIWSDDGELVALVTKDS-- 166 (443)
T ss_dssp -TT-----SS----EEEEE----SSSEEE-E-ETTEEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE-S-S--
T ss_pred ccceEEcCCc---ccceEEc---CcEEEE-E-CCCCEEEEEhhHc-ceeeEEecC--CCcEEEEECCCCEEEEEeCCe--
Confidence 2222333322 1222322 777776 3 4458999999986 666666533 389999999999999998776
Q ss_pred EEEEECCCc
Q psy3710 210 IRVFDTGSG 218 (424)
Q Consensus 210 i~iwd~~~~ 218 (424)
+.+++....
T Consensus 167 i~il~~~~~ 175 (443)
T PF04053_consen 167 IYILKYNLE 175 (443)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEecch
Confidence 677765433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.9e-05 Score=72.51 Aligned_cols=177 Identities=15% Similarity=0.261 Sum_probs=121.3
Q ss_pred CeeEeecC-CeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecC
Q psy3710 23 GCFACGME-DGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNA 100 (424)
Q Consensus 23 ~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~ 100 (424)
..+.-|+- +.+..+|+.+.+.........+.+. +...++...+++. ..|+|.+-|.++.+.++++. |.+
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~---imR~Nnr~lf~G~------t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVT---IMRYNNRNLFCGD------TRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceE---EEEecCcEEEeec------ccceEEeecCCcCceeeeeecccc
Confidence 34554443 3388888888777554444444443 3333444445554 36999999999999999998 899
Q ss_pred CeEEEEecCCceEEEe----------eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCC-CeEEEeeccCCeEEEE
Q psy3710 101 PVKGVRLRRDKIVVVL----------EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNN-SLLAFPGRKSGHVHLV 169 (424)
Q Consensus 101 ~v~~~~~~~~~~~~~~----------~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~dg~i~i~ 169 (424)
.+.++....+..+.+. |.-|+|||++ ..+.+..+..+..+. .+.+.|.- ..+++ .+..|...+-
T Consensus 219 siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLR-mmral~PI~~~~~P~---flrf~Psl~t~~~V-~S~sGq~q~v 293 (1118)
T KOG1275|consen 219 SISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLR-MMRALSPIQFPYGPQ---FLRFHPSLTTRLAV-TSQSGQFQFV 293 (1118)
T ss_pred ceeeeeccCCeEEEeecccccccccccchhhhhhhh-hhhccCCcccccCch---hhhhcccccceEEE-Eecccceeec
Confidence 9999888776544432 7789999997 667666666555442 23444433 33454 7888999999
Q ss_pred e---CCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEE
Q psy3710 170 D---LADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 214 (424)
Q Consensus 170 d---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd 214 (424)
| +.+.......+......+..++++++|+.++.+..+|. |.+|-
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~-v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGH-VNLWA 340 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCc-Eeeec
Confidence 8 44321222333344555999999999999999999999 99997
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.004 Score=58.19 Aligned_cols=293 Identities=15% Similarity=0.141 Sum_probs=153.8
Q ss_pred CeeEeecCCe-EEEEeCCcCcccccccccC-CCeee---E-----EEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcE
Q psy3710 23 GCFACGMEDG-FRIYNCDPLKEKERQDFTD-GGLGH---V-----EMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQV 92 (424)
Q Consensus 23 ~~la~g~~~~-i~iw~~~~~~~~~~~~~~~-~~i~~---~-----~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~ 92 (424)
..+.+++.++ |.-.|..+++.+....... ..+.. . .....+..+++.+ .|+.+.-.|.++|+.
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-------~dg~l~ALDa~TGk~ 142 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-------LDARLVALDAKTGKV 142 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-------CCCEEEEEECCCCCE
Confidence 3444444444 8888888888765443311 11110 0 0111234454444 478999999999999
Q ss_pred EEEEeecC-----CeEE-EEecCCceEEEe-------eccEEEEeecCCCceeEEEeeCCCC------------------
Q psy3710 93 VICLEFNA-----PVKG-VRLRRDKIVVVL-------EGLIKVYTFIQCPQQLHVFETNPNP------------------ 141 (424)
Q Consensus 93 ~~~~~~~~-----~v~~-~~~~~~~~~~~~-------~~~i~v~~~~~~~~~~~~~~~~~~~------------------ 141 (424)
+....... .+.+ ..+..+..++.. +|.|..+|.+ +++.+..+......
T Consensus 143 ~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~-TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~ 221 (527)
T TIGR03075 143 VWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAK-TGKLVWRRYTVPGDMGYLDKADKPVGGEPGAK 221 (527)
T ss_pred EeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECC-CCceeEeccCcCCCcccccccccccccccccC
Confidence 98765311 1111 112223333332 4678888886 66666554332110
Q ss_pred -----------Cee-EEEeecCCCCeEEEeeccC-----C-----------eEEEEeCCCCCCCCcccccccCCe-----
Q psy3710 142 -----------KGL-CVLCPNSNNSLLAFPGRKS-----G-----------HVHLVDLADPERPPLDIAAHEAPL----- 188 (424)
Q Consensus 142 -----------~~~-~~~~~~~~~~~l~~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~~~v----- 188 (424)
..+ ..+++.++..++.. +..+ + .|.-.|++++ +..-.++.....+
T Consensus 222 tw~~~~~~~gg~~~W~~~s~D~~~~lvy~-~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG-~~~W~~Q~~~~D~wD~d~ 299 (527)
T TIGR03075 222 TWPGDAWKTGGGATWGTGSYDPETNLIYF-GTGNPSPWNSHLRPGDNLYTSSIVARDPDTG-KIKWHYQTTPHDEWDYDG 299 (527)
T ss_pred CCCCCccccCCCCccCceeEcCCCCeEEE-eCCCCCCCCCCCCCCCCccceeEEEEccccC-CEEEeeeCCCCCCccccC
Confidence 000 12355565666655 4311 2 5666677776 4433333221111
Q ss_pred ----EEEEEccCCC---EEEEEecCCcEEEEEECCCcceeeE--------Eecc--------------------------
Q psy3710 189 ----SCIALNQTGT---RLATASYKGTLIRVFDTGSGQKLNE--------LRRG-------------------------- 227 (424)
Q Consensus 189 ----~~~~~~~~~~---~l~~~~~d~~~i~iwd~~~~~~~~~--------~~~~-------------------------- 227 (424)
.-+.+..+|+ .++.+..+|. +++.|-++++.+.. ....
T Consensus 300 ~~~p~l~d~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~ 378 (527)
T TIGR03075 300 VNEMILFDLKKDGKPRKLLAHADRNGF-FYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVG 378 (527)
T ss_pred CCCcEEEEeccCCcEEEEEEEeCCCce-EEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeE
Confidence 1222224665 6778899998 99999999987621 1000
Q ss_pred ----------eeeeeecCCCCeEEEEeec--------------------------------CCeEEEEeCCCCCCCCeee
Q psy3710 228 ----------LCVLCPNSNNSLLAFPGRK--------------------------------SGHVHLVDLADPERPPLDI 265 (424)
Q Consensus 228 ----------~~~~~~~~~~~~~~~~~~~--------------------------------dg~i~i~d~~~~~~~~~~~ 265 (424)
-...+++|....+++.... -|.|.-+|+.+++..-..-
T Consensus 379 ~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~ 458 (527)
T TIGR03075 379 VCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHK 458 (527)
T ss_pred ECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEec
Confidence 0113444544444332111 2456777777765322211
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeeccCCcEEEE---EeCCCcEEEEEc
Q psy3710 266 AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYLCV---SSDHGTVHVFSV 329 (424)
Q Consensus 266 ~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~l~~---~~~d~~i~iw~~ 329 (424)
...+...-...-.+.+++.++.+|. ++.+|.++|+.+.++.-.+...++ -..||++++-..
T Consensus 459 --~~~p~~~~~l~t~g~lvf~g~~~G~-l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qYv~~~ 522 (527)
T TIGR03075 459 --EDFPLWGGVLATAGDLVFYGTLEGY-FKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYVAVL 522 (527)
T ss_pred --CCCCCCCcceEECCcEEEEECCCCe-EEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEEEEEE
Confidence 1111111011124457777888999 999999999999988765543332 123666666543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.4e-05 Score=67.25 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=81.2
Q ss_pred EEeecCCeEEEEecCCc--eEEEe------ec----cEEEEeecCCC-ceeEEEeeCCCCCeeEEEeecCCCCeEEEeec
Q psy3710 95 CLEFNAPVKGVRLRRDK--IVVVL------EG----LIKVYTFIQCP-QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGR 161 (424)
Q Consensus 95 ~~~~~~~v~~~~~~~~~--~~~~~------~~----~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (424)
.+..+....++.|+... .+... +| .-.+|++..+. +.+. +..-.-+..+.+.+++|+...++. |+
T Consensus 201 yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvs-vtsipL~s~v~~ca~sp~E~kLvl-GC 278 (545)
T PF11768_consen 201 YIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVS-VTSIPLPSQVICCARSPSEDKLVL-GC 278 (545)
T ss_pred EEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEE-EEEEecCCcceEEecCcccceEEE-Ee
Confidence 33345566777787432 22221 33 23566664221 2222 222233455778899999999999 99
Q ss_pred cCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCccee
Q psy3710 162 KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL 221 (424)
Q Consensus 162 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~ 221 (424)
.||.|.+||...+ ........-..+.++|+|+|..+++|+..|. +.+||+.-....
T Consensus 279 ~DgSiiLyD~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~ALspi~ 334 (545)
T PF11768_consen 279 EDGSIILYDTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMALSPIK 334 (545)
T ss_pred cCCeEEEEEcCCC---eeeeeeecccceEEEEcCCCcEEEEEcCCce-EEEEEeecCccc
Confidence 9999999998763 2333344556789999999999999999999 999998755433
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.003 Score=54.91 Aligned_cols=214 Identities=11% Similarity=-0.014 Sum_probs=100.0
Q ss_pred EECCCCCeeEe-ecCCe---EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcE
Q psy3710 17 GFNQDQGCFAC-GMEDG---FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQV 92 (424)
Q Consensus 17 ~~s~~g~~la~-g~~~~---i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~ 92 (424)
+|.+||+.|+. +..++ +.+.|+++++..+.............++++++.++.+.. ...|+-.|+++.+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~-------~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN-------GRSLRRVDLDTLEE 114 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET-------TTEEEEEETTT--E
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC-------CCeEEEEECCcCcE
Confidence 57889977764 44344 888899988876554443233335677888888888762 46899999999887
Q ss_pred EEEEeecCC-eEEEEe--cCCceEEEe-------------------------eccEEEEeecCCCceeEEEeeCCCCCee
Q psy3710 93 VICLEFNAP-VKGVRL--RRDKIVVVL-------------------------EGLIKVYTFIQCPQQLHVFETNPNPKGL 144 (424)
Q Consensus 93 ~~~~~~~~~-v~~~~~--~~~~~~~~~-------------------------~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 144 (424)
...+..+.. +-...| +.|+..++. ...|.-.|++ +++....+... ..+
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~-tG~~~~v~~~~---~wl 190 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK-TGERKVVFEDT---DWL 190 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT-T--EEEEEEES---S-E
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC-CCceeEEEecC---ccc
Confidence 766664433 323444 344444432 1234444554 44443333322 234
Q ss_pred EEEeecCCCCeEEEeecc---CC-eEEEEeCCCCCCCCccccccc--CCeEEEEEccCCCEEEEEec-----CCcEEEEE
Q psy3710 145 CVLCPNSNNSLLAFPGRK---SG-HVHLVDLADPERPPLDIAAHE--APLSCIALNQTGTRLATASY-----KGTLIRVF 213 (424)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~---dg-~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~-----d~~~i~iw 213 (424)
-.+.++|....+++-+-+ +. .-+||-+++.......+..+. ..+..=-|.|||..|.--+. +.. |.-+
T Consensus 191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~-i~~~ 269 (386)
T PF14583_consen 191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW-IAGY 269 (386)
T ss_dssp EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE-EEEE
T ss_pred cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE-EEee
Confidence 456677765555542332 22 125565554333333333332 23344458899987765332 334 7777
Q ss_pred ECCCcceeeEEecce-eeeeecCCCCeEEE
Q psy3710 214 DTGSGQKLNELRRGL-CVLCPNSNNSLLAF 242 (424)
Q Consensus 214 d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 242 (424)
|..+++.......+. .-+..++++..++-
T Consensus 270 d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vG 299 (386)
T PF14583_consen 270 DPDTGERRRLMEMPWCSHFMSSPDGKLFVG 299 (386)
T ss_dssp -TTT--EEEEEEE-SEEEEEE-TTSSEEEE
T ss_pred CCCCCCceEEEeCCceeeeEEcCCCCEEEe
Confidence 888876544333332 23344566665554
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0038 Score=57.08 Aligned_cols=245 Identities=14% Similarity=0.090 Sum_probs=131.0
Q ss_pred ceEEEEECCCCCeeEee----cCCe--EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCC----cCCCe
Q psy3710 12 GLLYAGFNQDQGCFACG----MEDG--FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPK----YPNNR 81 (424)
Q Consensus 12 ~V~~~~~s~~g~~la~g----~~~~--i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~----~~d~~ 81 (424)
.+...++||||+++|.+ +++. ++++|+++++.+.. .........+.|.++++.++......... .....
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cccccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34467899999999954 2222 99999999876532 21122222399999999988887543111 11467
Q ss_pred EEEEECCCCcEE--EEEee--cCC-eEEEEecCCceEEEe------e-ccEEEEeecCC---CceeEEEeeCCCCCeeEE
Q psy3710 82 VMIWDDLKKQVV--ICLEF--NAP-VKGVRLRRDKIVVVL------E-GLIKVYTFIQC---PQQLHVFETNPNPKGLCV 146 (424)
Q Consensus 82 i~iwd~~~~~~~--~~~~~--~~~-v~~~~~~~~~~~~~~------~-~~i~v~~~~~~---~~~~~~~~~~~~~~~~~~ 146 (424)
|+.|.+.+.... ..+.. ... ...+..++|+.++.. + ..+.+.++... ......+...... +..
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~--~~~ 281 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDG--VEY 281 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS---EE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCc--eEE
Confidence 899998766432 33332 222 567888999877653 3 56888887632 2233334333222 222
Q ss_pred EeecCCCCeEEEee--ccCCeEEEEeCCCCCC--CCcccccccCCeEEEEEccCCCEEEEEe-cCCc-EEEEEECCCcce
Q psy3710 147 LCPNSNNSLLAFPG--RKSGHVHLVDLADPER--PPLDIAAHEAPLSCIALNQTGTRLATAS-YKGT-LIRVFDTGSGQK 220 (424)
Q Consensus 147 ~~~~~~~~~l~~~~--~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~-~i~iwd~~~~~~ 220 (424)
..-+..+.+++.+. ..++.|...++..... ....+..+...+.--.+...+++|+... .++. .|+++++..+..
T Consensus 282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 22222444554422 3356777778876521 1124445555433333334445555443 3332 388999984444
Q ss_pred eeEEecc----eeeeeecCCCCeEEEEee---cCCeEEEEeCCCCC
Q psy3710 221 LNELRRG----LCVLCPNSNNSLLAFPGR---KSGHVHLVDLADPE 259 (424)
Q Consensus 221 ~~~~~~~----~~~~~~~~~~~~~~~~~~---~dg~i~i~d~~~~~ 259 (424)
...++.. +..+...+.+..+.+.-+ .-++++.||+.+++
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 4444432 234444566666666443 24578888887765
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.5e-05 Score=71.51 Aligned_cols=106 Identities=20% Similarity=0.329 Sum_probs=80.8
Q ss_pred EEEEccCCCEEEEEe----cCCcEEEEEECCCcceeeEE--ecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCe
Q psy3710 190 CIALNQTGTRLATAS----YKGTLIRVFDTGSGQKLNEL--RRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL 263 (424)
Q Consensus 190 ~~~~~~~~~~l~~~~----~d~~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~ 263 (424)
-..|+|...+++.++ ..|. |.||- ++|++.+.. +.+..++||+|..-.++ .|-.-|.+.+|...+.+. ..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GS-VtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa-~gwe~g~~~v~~~~~~e~-ht 95 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGS-VTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLA-QGWEMGVSDVQKTNTTET-HT 95 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCce-EEEEe-cCCCCCcccccceehhhhccChHHHHHh-hccccceeEEEecCCcee-ee
Confidence 346888877777765 3466 77774 466655544 44567789998765555 488899999999877552 23
Q ss_pred eeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 264 DIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 264 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
....|..+|..+.|||+|..|+++..-|. +.+|...
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~-v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGS-VHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCce-eEEEEee
Confidence 34479999999999999999999999999 9999876
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0006 Score=61.28 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=62.2
Q ss_pred cccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeE-EecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCC
Q psy3710 183 AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE-LRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER 260 (424)
Q Consensus 183 ~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~ 260 (424)
.....|.+.+++|+.+.++.|+.||. |.+||...+..... ..--...++|+|+|..+++ |+..|.+.+||+.-...
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V-~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGS-IILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVV-GSEQGELQCFDMALSPI 333 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCe-EEEEEcCCCeeeeeeecccceEEEEcCCCcEEEE-EcCCceEEEEEeecCcc
Confidence 56788999999999999999999999 99999876633322 2223577899999998887 99999999999976543
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0035 Score=53.68 Aligned_cols=231 Identities=15% Similarity=0.168 Sum_probs=126.0
Q ss_pred ccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEE--eeccEEEEeecCCCceeEEE---
Q psy3710 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVV--LEGLIKVYTFIQCPQQLHVF--- 135 (424)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~i~v~~~~~~~~~~~~~--- 135 (424)
..++.++++. .+| +.+++.........+.....|..+...++-..+. +|+.+.++++. ........
T Consensus 5 ~~~~~L~vGt-------~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~-~l~~~~~~~~~ 75 (275)
T PF00780_consen 5 SWGDRLLVGT-------EDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSDGQLYVYDLD-SLEPVSTSAPL 75 (275)
T ss_pred cCCCEEEEEE-------CCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEcCCccEEEEch-hhccccccccc
Confidence 3456676666 356 9999984444444444455599999988654333 49999999985 22221100
Q ss_pred ---------eeCCCCCeeEEEe---ecCCCCeEEEeeccCCeEEEEeCCCCCC----CCcccccccCCeEEEEEccCCCE
Q psy3710 136 ---------ETNPNPKGLCVLC---PNSNNSLLAFPGRKSGHVHLVDLADPER----PPLDIAAHEAPLSCIALNQTGTR 199 (424)
Q Consensus 136 ---------~~~~~~~~~~~~~---~~~~~~~l~~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~ 199 (424)
.......++..++ .......|+ ......|.+|....... ..+.+ .-...+.+++|. ++.
T Consensus 76 ~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~--va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~ 150 (275)
T PF00780_consen 76 AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLC--VAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNK 150 (275)
T ss_pred cccccccccccccccCCeeEEeeccccccceEEE--EEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCE
Confidence 0111122344444 223334444 34555899888876311 22232 234788999998 467
Q ss_pred EEEEecCCcEEEEEECCCcceeeEEecc------------eeee-e-ecCCCCeEEEEeecCCeEEEEeCCCCCCCCeee
Q psy3710 200 LATASYKGTLIRVFDTGSGQKLNELRRG------------LCVL-C-PNSNNSLLAFPGRKSGHVHLVDLADPERPPLDI 265 (424)
Q Consensus 200 l~~~~~d~~~i~iwd~~~~~~~~~~~~~------------~~~~-~-~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~ 265 (424)
++.+..++ ..+.|+.++....-+... ...+ . .-+++..+++ .+..-.+.|..........+
T Consensus 151 i~v~~~~~--f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~---~~~~g~fv~~~G~~~r~~~i 225 (275)
T PF00780_consen 151 ICVGTSKG--FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLC---YDNIGVFVNKNGEPSRKSTI 225 (275)
T ss_pred EEEEeCCc--eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEE---ecceEEEEcCCCCcCcccEE
Confidence 77777666 799999877554333211 0111 1 1122333332 23333344443322111222
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeeccCCcEE
Q psy3710 266 AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYL 315 (424)
Q Consensus 266 ~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~l 315 (424)
.-...+.++++.. .+|+....++ |.||++.+++.++++.-.+-.+
T Consensus 226 -~W~~~p~~~~~~~--pyli~~~~~~--iEV~~~~~~~lvQ~i~~~~~~~ 270 (275)
T PF00780_consen 226 -QWSSAPQSVAYSS--PYLIAFSSNS--IEVRSLETGELVQTIPLPNIRL 270 (275)
T ss_pred -EcCCchhEEEEEC--CEEEEECCCE--EEEEECcCCcEEEEEECCCEEE
Confidence 2233555666643 4676666544 8999999999988887554433
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0036 Score=53.59 Aligned_cols=147 Identities=21% Similarity=0.332 Sum_probs=92.4
Q ss_pred cCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceee-------
Q psy3710 150 NSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN------- 222 (424)
Q Consensus 150 ~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~------- 222 (424)
...++.|++ |.++| +.+++........... +...|..+...|+-+.+++-+ |+. ++++++..-....
T Consensus 4 ~~~~~~L~v-Gt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~-l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 4 DSWGDRLLV-GTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQ-LYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred ccCCCEEEE-EECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCc-cEEEEchhhccccccccccc
Confidence 345778888 98888 8999984332222222 233499999999877777765 488 9999987654333
Q ss_pred --------EEe--cceeeee--ecCCCCeEEEEeecCCeEEEEeCCCCC----CCCeeeccCCCCeEEEEEcCCCCEEEE
Q psy3710 223 --------ELR--RGLCVLC--PNSNNSLLAFPGRKSGHVHLVDLADPE----RPPLDIAAHEAPLSCIALNQTGTRLAT 286 (424)
Q Consensus 223 --------~~~--~~~~~~~--~~~~~~~~~~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~ 286 (424)
.+. .+...++ -...+...++ ......|.+|...... ...+.+ .-...+.+++|. ++.++.
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICV 153 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEE
Confidence 111 1233333 1233333333 4455589888887642 122333 345788999998 457877
Q ss_pred EeCCCcEEEEEECCCCceeeee
Q psy3710 287 ASYKGTLIRVFDTGSGQKLNEL 308 (424)
Q Consensus 287 ~~~d~~~i~iwd~~~~~~~~~~ 308 (424)
|..++ ..+.|+.++....-+
T Consensus 154 ~~~~~--f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 154 GTSKG--FYLIDLNTGSPSELL 173 (275)
T ss_pred EeCCc--eEEEecCCCCceEEe
Confidence 77666 789999977665444
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0055 Score=54.98 Aligned_cols=242 Identities=17% Similarity=0.219 Sum_probs=154.9
Q ss_pred eeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeec-CCeEEEEecCCceEE-Ee---eccEEEEeecCCC
Q psy3710 55 GHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFN-APVKGVRLRRDKIVV-VL---EGLIKVYTFIQCP 129 (424)
Q Consensus 55 ~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-~~---~~~i~v~~~~~~~ 129 (424)
..+...+++..+..+... .+ .+..-+............. .....+++++.+..+ +. ++.|.+.|.. ..
T Consensus 34 ~~v~~~~~g~~~~v~~~~-----~~-~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~-~~ 106 (381)
T COG3391 34 GGVAVNPDGTQVYVANSG-----SN-DVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTA-TN 106 (381)
T ss_pred ceeEEcCccCEEEEEeec-----Cc-eeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCc-cc
Confidence 345666777555555433 12 5555554422222222222 344567777777533 33 5899999975 55
Q ss_pred ceeEEEeeCCCCCeeEEEeecCCCCeEEEeec--cCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEe-cC
Q psy3710 130 QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGR--KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS-YK 206 (424)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d 206 (424)
...........+ ..+.++++++.+.++-. .++.+.+.|..+. ........-..+ ..+++.|+|+.++... .+
T Consensus 107 ~~~~~~~vG~~P---~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~-~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~ 181 (381)
T COG3391 107 TVLGSIPVGLGP---VGLAVDPDGKYVYVANAGNGNNTVSVIDAATN-KVTATIPVGNTP-TGVAVDPDGNKVYVTNSDD 181 (381)
T ss_pred ceeeEeeeccCC---ceEEECCCCCEEEEEecccCCceEEEEeCCCC-eEEEEEecCCCc-ceEEECCCCCeEEEEecCC
Confidence 555555544433 45688999988887444 3688999998876 444443332344 8999999999777665 56
Q ss_pred CcEEEEEECCCcceee-E----Ee--cceeeeeecCCCCeEEEEeecC--CeEEEEeCCCCCCCCeeeccCCCCeEEEEE
Q psy3710 207 GTLIRVFDTGSGQKLN-E----LR--RGLCVLCPNSNNSLLAFPGRKS--GHVHLVDLADPERPPLDIAAHEAPLSCIAL 277 (424)
Q Consensus 207 ~~~i~iwd~~~~~~~~-~----~~--~~~~~~~~~~~~~~~~~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 277 (424)
+. |.+.|........ . .. .....+.+.+++..+.++-..+ +.+...|..+.................+..
T Consensus 182 ~~-v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~ 260 (381)
T COG3391 182 NT-VSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAV 260 (381)
T ss_pred Ce-EEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeE
Confidence 66 9999987666553 1 11 2246678899999887766555 689999988765322211111114567899
Q ss_pred cCCCCEEEEEeCC-CcEEEEEECCCCceeeeecc
Q psy3710 278 NQTGTRLATASYK-GTLIRVFDTGSGQKLNELRR 310 (424)
Q Consensus 278 ~~~~~~l~~~~~d-~~~i~iwd~~~~~~~~~~~~ 310 (424)
+|+|+.+...... +. +.+.|..+......+..
T Consensus 261 ~p~g~~~yv~~~~~~~-V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 261 DPAGKAAYVANSQGGT-VSVIDGATDRVVKTGPT 293 (381)
T ss_pred CCCCCEEEEEecCCCe-EEEEeCCCCceeeeecc
Confidence 9999999888555 56 99999998887776543
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0018 Score=59.43 Aligned_cols=159 Identities=13% Similarity=0.085 Sum_probs=102.4
Q ss_pred cccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe--ecCCeEEEEecCCceEEEe---eccEEE
Q psy3710 48 DFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE--FNAPVKGVRLRRDKIVVVL---EGLIKV 122 (424)
Q Consensus 48 ~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---~~~i~v 122 (424)
.++...+...++...+++++..+ +-|.+++|+-..++....-. ..+.+....++++..++|. .|.|.+
T Consensus 30 ~~~~~~v~lTc~dst~~~l~~Gs-------S~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 30 GFFPARVKLTCVDATEEYLAMGS-------SAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSV 102 (726)
T ss_pred ccCcceEEEEEeecCCceEEEec-------ccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEe
Confidence 34566677778888899998888 45999999976655443222 2344556667887776665 788999
Q ss_pred EeecCCCceeEE-Eee--CCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCC---CCCCcccccccCCeEEEEEccC
Q psy3710 123 YTFIQCPQQLHV-FET--NPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADP---ERPPLDIAAHEAPLSCIALNQT 196 (424)
Q Consensus 123 ~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~ 196 (424)
+.+......-.. +.. ..++..+++++|++++..+++ |...|.|.+-.+... ....+.+..-.++|..+....
T Consensus 103 ~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ys-GD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q- 180 (726)
T KOG3621|consen 103 FQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYS-GDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ- 180 (726)
T ss_pred ehhhccCCCcceeeccccccCCceEEEEEecccccEEee-cCCCceEEEEEechhhhhccccceeeccCcceEEeeccc-
Confidence 887532221111 111 123577999999999999998 999999999888762 112223334567788887653
Q ss_pred CCEEEEEecCCcEEEEEECCCc
Q psy3710 197 GTRLATASYKGTLIRVFDTGSG 218 (424)
Q Consensus 197 ~~~l~~~~~d~~~i~iwd~~~~ 218 (424)
+ +|+.++.-. ..+++++.+
T Consensus 181 ~-~LLVStl~r--~~Lc~tE~e 199 (726)
T KOG3621|consen 181 S-YLLVSTLTR--CILCQTEAE 199 (726)
T ss_pred c-eehHhhhhh--hheeecchh
Confidence 3 333333333 345665544
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.01 Score=54.24 Aligned_cols=243 Identities=14% Similarity=0.118 Sum_probs=126.7
Q ss_pred eeEEEeccCceEEEEeC--CcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe---ec-----------
Q psy3710 55 GHVEMLFRCNYLALVGG--GTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL---EG----------- 118 (424)
Q Consensus 55 ~~~~~~~~~~~l~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~----------- 118 (424)
....++|++++++..-. |. ....+++.|+++|+.+...-.......+.|.+++..+.. +.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~----e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGS----EWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTS----SEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeECCCCCEEEEEecCCCC----ceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 35778899999886531 21 235799999999987764322222233999999755543 11
Q ss_pred cEEEEeecCCCce-eEEEeeCCCCCeeEEEeecCCCCeEEEeeccC---CeEEEEeCCCC---CCCCcccccccCCeEEE
Q psy3710 119 LIKVYTFIQCPQQ-LHVFETNPNPKGLCVLCPNSNNSLLAFPGRKS---GHVHLVDLADP---ERPPLDIAAHEAPLSCI 191 (424)
Q Consensus 119 ~i~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d---g~i~i~d~~~~---~~~~~~~~~~~~~v~~~ 191 (424)
.|+.|.+...... ...++..........+..++|++++++..... ..+.+.++... ......+......+...
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 2677777532222 34455554444356778899999988633332 45777888763 12333444434444333
Q ss_pred EEccCCCEEEEEe---cCCcEEEEEECCCcce---eeEEec---ceeeeeecCCCCeEEEEeecCC--eEEEEeCC-CCC
Q psy3710 192 ALNQTGTRLATAS---YKGTLIRVFDTGSGQK---LNELRR---GLCVLCPNSNNSLLAFPGRKSG--HVHLVDLA-DPE 259 (424)
Q Consensus 192 ~~~~~~~~l~~~~---~d~~~i~iwd~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~dg--~i~i~d~~-~~~ 259 (424)
.-+..+.+++... ..+. |...++.+... ...+.. ......+...+..+++....++ .|+++++. ...
T Consensus 283 v~~~~~~~yi~Tn~~a~~~~-l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 283 VDHHGDRLYILTNDDAPNGR-LVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEETTEEEEEE-TT-TT-E-EEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEccCCEEEEeeCCCCCCcE-EEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 3233333333332 2345 66667766542 112221 2344455566777887777766 57788887 322
Q ss_pred CCCeeeccCCCCeEEEEEcCCCCEEEE-EeC---CCcEEEEEECCCCce
Q psy3710 260 RPPLDIAAHEAPLSCIALNQTGTRLAT-ASY---KGTLIRVFDTGSGQK 304 (424)
Q Consensus 260 ~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~---d~~~i~iwd~~~~~~ 304 (424)
.....+ .-.+.|..+...++++.+.. .+. -.+ +..||+.+++.
T Consensus 362 ~~~~~~-p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~-~y~~d~~t~~~ 408 (414)
T PF02897_consen 362 SREIPL-PEAGSVSGVSGDFDSDELRFSYSSFTTPPT-VYRYDLATGEL 408 (414)
T ss_dssp EEEEES-SSSSEEEEEES-TT-SEEEEEEEETTEEEE-EEEEETTTTCE
T ss_pred EeeecC-CcceEEeccCCCCCCCEEEEEEeCCCCCCE-EEEEECCCCCE
Confidence 111111 12333555554454443322 221 233 66667766654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.015 Score=55.96 Aligned_cols=328 Identities=12% Similarity=0.116 Sum_probs=170.7
Q ss_pred eEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe---ecCC
Q psy3710 25 FACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE---FNAP 101 (424)
Q Consensus 25 la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~ 101 (424)
|+=...++||+++-+ ..+..... .+.++......+...++.+++ ++.+...+...+. ++... ....
T Consensus 464 lvQvTs~~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~-------~~~l~y~~i~~~~-l~e~~~~~~e~e 532 (1096)
T KOG1897|consen 464 LVQVTSNSIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGG-------GLALFYLEIEDGG-LREVSHKEFEYE 532 (1096)
T ss_pred EEEEecccEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecC-------ccEEEEEEeeccc-eeeeeeheecce
Confidence 333334446777644 12111222 444555555566667777774 3566666666555 33332 5788
Q ss_pred eEEEEecCCc------eEEEe---eccEEEEeecCCCceeE--EEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEe
Q psy3710 102 VKGVRLRRDK------IVVVL---EGLIKVYTFIQCPQQLH--VFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVD 170 (424)
Q Consensus 102 v~~~~~~~~~------~~~~~---~~~i~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d 170 (424)
|.|+.++|-+ ..++. +..+.+.-..++...+. .+....-|..+....+-.|..+|.+ +..||.+.-|-
T Consensus 533 vaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlv-algdG~l~~fv 611 (1096)
T KOG1897|consen 533 VACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLV-ALGDGALLYFV 611 (1096)
T ss_pred eEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEE-EcCCceEEEEE
Confidence 9999998652 23332 44444333322333322 2344445566666677667888888 99999988765
Q ss_pred CCCCCCCCccc---ccccCCeEEEEEccCCC-------------------------------------------EEEEEe
Q psy3710 171 LADPERPPLDI---AAHEAPLSCIALNQTGT-------------------------------------------RLATAS 204 (424)
Q Consensus 171 ~~~~~~~~~~~---~~~~~~v~~~~~~~~~~-------------------------------------------~l~~~~ 204 (424)
+.......... .--..|+.--.|+..++ .++++.
T Consensus 612 ~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~ 691 (1096)
T KOG1897|consen 612 LDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN 691 (1096)
T ss_pred EEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEec
Confidence 54321110000 00112222222222111 122222
Q ss_pred cCCcEEEEEECCCcce--eeEEec--ceeeeeecCCCCeEEEEee----------cC---CeEEEEeCCCCCCCCeeecc
Q psy3710 205 YKGTLIRVFDTGSGQK--LNELRR--GLCVLCPNSNNSLLAFPGR----------KS---GHVHLVDLADPERPPLDIAA 267 (424)
Q Consensus 205 ~d~~~i~iwd~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~----------~d---g~i~i~d~~~~~~~~~~~~~ 267 (424)
.+ . +++.-+..-+. +++++. +...+|+.+....+.+... .. ..++++|-++-+ .+..
T Consensus 692 ~~-~-l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~----vl~~ 765 (1096)
T KOG1897|consen 692 GG-A-LTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE----VLSS 765 (1096)
T ss_pred CC-c-eEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCcee----EEee
Confidence 21 1 33333322111 112221 2334555553333333211 11 135566655533 2222
Q ss_pred CC-------CCeEEEEEcCC-CCEEEEEeC----------CCcEEEEEECCCCceeeeec-------------cCCcEEE
Q psy3710 268 HE-------APLSCIALNQT-GTRLATASY----------KGTLIRVFDTGSGQKLNELR-------------RDSSYLC 316 (424)
Q Consensus 268 ~~-------~~v~~~~~~~~-~~~l~~~~~----------d~~~i~iwd~~~~~~~~~~~-------------~~~~~l~ 316 (424)
|+ -.+.++.|..| +.+++.|.. .|. |.++....++.+.... -+|+++|
T Consensus 766 hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GR-Iivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA 844 (1096)
T KOG1897|consen 766 HEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGR-IIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLA 844 (1096)
T ss_pred ccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccce-EEEEEEecCCceeeeeeeeeccceeehhhhCCeEEE
Confidence 22 23455568777 677777753 467 8899887754444332 2566666
Q ss_pred EEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecC
Q psy3710 317 VSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 317 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~ 395 (424)
.- ...|++|+..+.+.++.... +..++..+.....|..+++|+.-+.+.+..+..
T Consensus 845 ~I--n~~vrLye~t~~~eLr~e~~----------------------~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 845 GI--NQSVRLYEWTTERELRIECN----------------------ISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred ec--CcEEEEEEccccceehhhhc----------------------ccCCeEEEEEEecCcEEEEeeccceEEEEEEec
Confidence 54 45899999998755543222 224566777888899999999999888877763
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0032 Score=53.99 Aligned_cols=220 Identities=11% Similarity=-0.031 Sum_probs=125.0
Q ss_pred EEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEE-EEecCCceEEEeeccEEEEeecCCCceeEEEe
Q psy3710 58 EMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKG-VRLRRDKIVVVLEGLIKVYTFIQCPQQLHVFE 136 (424)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~ 136 (424)
.|.++.+.|+.+.-. .+.|.-|+..+++. ..+..++.+.+ ..+...+.+++++..+.+++.+ .+.....+.
T Consensus 31 ~w~~~~~~L~w~DI~------~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~-~~~~~t~~~ 102 (307)
T COG3386 31 VWDPDRGALLWVDIL------GGRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPD-TGGKITLLA 102 (307)
T ss_pred cCcCCCCEEEEEeCC------CCeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEEccccEEEecc-CCceeEEec
Confidence 356666766666543 58899998876653 34444444444 4456677888888888888874 443322221
Q ss_pred e---CCCCCeeEEEeecCCCCeEEEeec-----c-----CCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEE
Q psy3710 137 T---NPNPKGLCVLCPNSNNSLLAFPGR-----K-----SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATA 203 (424)
Q Consensus 137 ~---~~~~~~~~~~~~~~~~~~l~~~~~-----~-----dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 203 (424)
. .............|+|.+.+.+.. . -|.|+.+|. .+ ...+.+..+-..-+.|+||||++.|+.+
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g-~~~~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG-GVVRLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC-CEEEeecCcEEecCceEECCCCCEEEEE
Confidence 1 111122335566788887775333 1 133444443 22 4444555555556899999999888877
Q ss_pred ecC-CcEEEEEECCC--ccee-----eEEe---cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCe
Q psy3710 204 SYK-GTLIRVFDTGS--GQKL-----NELR---RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPL 272 (424)
Q Consensus 204 ~~d-~~~i~iwd~~~--~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 272 (424)
... +. |.-+++.. +... ..+. +..-.++...+|...+.+....+.|.+|+.. ++ ....+.-....+
T Consensus 181 DT~~~~-i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~-l~~~i~lP~~~~ 257 (307)
T COG3386 181 DTPANR-IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GK-LLGEIKLPVKRP 257 (307)
T ss_pred eCCCCe-EEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-Cc-EEEEEECCCCCC
Confidence 665 55 77777652 2111 1111 1134466666776665423333489999888 43 233333444667
Q ss_pred EEEEEc-CCCCEEEEEeCC
Q psy3710 273 SCIALN-QTGTRLATASYK 290 (424)
Q Consensus 273 ~~~~~~-~~~~~l~~~~~d 290 (424)
++++|- |+.+.|+..+..
T Consensus 258 t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 258 TNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred ccceEeCCCcCEEEEEecC
Confidence 777775 444554444433
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00058 Score=65.24 Aligned_cols=186 Identities=14% Similarity=0.163 Sum_probs=109.7
Q ss_pred CCceEEEeeccEEEEeecCCCcee--EEEeeCCCCCe-----eEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCccc
Q psy3710 109 RDKIVVVLEGLIKVYTFIQCPQQL--HVFETNPNPKG-----LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDI 181 (424)
Q Consensus 109 ~~~~~~~~~~~i~v~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~ 181 (424)
.|..+++-+..|.||.....+.+. ..+..-..+.+ -..+-...+..+|+........|+-.|++.+ +.+..+
T Consensus 442 ~DrSfVvRg~~igVFk~~~~~~l~f~t~i~~i~~~~g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~G-KVV~eW 520 (794)
T PF08553_consen 442 NDRSFVVRGSKIGVFKNTDDDGLEFSTAISNISTPKGKNFTPKKAMLHDQDRNMILLDPNNPNKLYKMDLERG-KVVEEW 520 (794)
T ss_pred cCceEEECCCcEeEEECCCCCceeeeEEecccccCCCcccCcchhhhhccccceEeecCCCCCceEEEecCCC-cEEEEe
Confidence 355555557788888864222211 11111111010 0112223345556653456688999999987 778888
Q ss_pred ccccCC-eEEEEEcc-----CCCEEEEEecCCcEEEEEECCCcc--eee----EEecceeeeeecCCCCeEEEEeecCCe
Q psy3710 182 AAHEAP-LSCIALNQ-----TGTRLATASYKGTLIRVFDTGSGQ--KLN----ELRRGLCVLCPNSNNSLLAFPGRKSGH 249 (424)
Q Consensus 182 ~~~~~~-v~~~~~~~-----~~~~l~~~~~d~~~i~iwd~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~dg~ 249 (424)
..|... |..++-.. +......|-.+.. +..||.|-.. ++. .+.......|+...+.-.++.|+.+|.
T Consensus 521 ~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~-lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~ 599 (794)
T PF08553_consen 521 KVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNS-LFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGD 599 (794)
T ss_pred ecCCCcceeEecccccccccCCCceEEEECCCc-eEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCc
Confidence 777644 55554221 1234455666677 9999998642 221 222222222333333333344999999
Q ss_pred EEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEC
Q psy3710 250 VHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDT 299 (424)
Q Consensus 250 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~ 299 (424)
|++||-. +......+++-..+|..|..+.||+++++.+..- +.+++.
T Consensus 600 IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ty--LlLi~t 646 (794)
T PF08553_consen 600 IRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCKTY--LLLIDT 646 (794)
T ss_pred EEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeecce--EEEEEE
Confidence 9999953 4445566778889999999999999998877665 677765
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0018 Score=62.12 Aligned_cols=132 Identities=14% Similarity=0.198 Sum_probs=91.3
Q ss_pred CCeEEEEECCCCcEEEEEeecC--CeEEEEec-------CCceEEEe-eccEEEEeecCCCceeEE--EeeCCCCCeeEE
Q psy3710 79 NNRVMIWDDLKKQVVICLEFNA--PVKGVRLR-------RDKIVVVL-EGLIKVYTFIQCPQQLHV--FETNPNPKGLCV 146 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~~-------~~~~~~~~-~~~i~v~~~~~~~~~~~~--~~~~~~~~~~~~ 146 (424)
.+.|+-.|+++|+.+.+..... +|..++-. +...+++. ++.+..||.+-.+..+.. ...........|
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~ 582 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC 582 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence 5789999999999999998433 34554432 33456665 889999999754422211 111122233556
Q ss_pred EeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEEC
Q psy3710 147 LCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDT 215 (424)
Q Consensus 147 ~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~ 215 (424)
++-+.+| +||+ |+.+|.||+||-- +.+....+.+-..+|..|..+.||+++++.+.. . +.+++.
T Consensus 583 ~aTt~~G-~iav-gs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-y-LlLi~t 646 (794)
T PF08553_consen 583 FATTEDG-YIAV-GSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCKT-Y-LLLIDT 646 (794)
T ss_pred EEecCCc-eEEE-EeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-e-EEEEEE
Confidence 6666555 5676 9999999999954 334555677778999999999999998876654 3 777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0093 Score=53.27 Aligned_cols=236 Identities=14% Similarity=0.161 Sum_probs=119.3
Q ss_pred eeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCC------------------------------------------Ccc
Q psy3710 143 GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERP------------------------------------------PLD 180 (424)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~------------------------------------------~~~ 180 (424)
.+..+++.++..-|++ |...|.|.+|.....+.. ...
T Consensus 3 ~v~~vs~a~~t~Elav-~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAV-GLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEE-EETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceEEE-EccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 3667777788777887 888888888865432100 011
Q ss_pred cccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe--c---------ceeeeee-----cCCC--CeEEE
Q psy3710 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR--R---------GLCVLCP-----NSNN--SLLAF 242 (424)
Q Consensus 181 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~--~---------~~~~~~~-----~~~~--~~~~~ 242 (424)
+....++|++++.+.= .+++.|..+|. +.|.|+|....+..-. . .+..+.| ..++ ...++
T Consensus 82 ~~~~~g~vtal~~S~i-GFvaigy~~G~-l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDI-GFVAIGYESGS-LVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE-BT-SEEEEEETTSE-EEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecCCC-cEEEEEecCCc-EEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 1233688999998744 58999999999 9999998887766522 1 1222222 2222 24566
Q ss_pred EeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEE--cCCCCEEEEEeCCCcEEEEEECCCCceeee-------ecc---
Q psy3710 243 PGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIAL--NQTGTRLATASYKGTLIRVFDTGSGQKLNE-------LRR--- 310 (424)
Q Consensus 243 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~-------~~~--- 310 (424)
+|+..|.+.+|.+.-.. ...-.+..+.. ..++..+ . |...+.++|+.... +++
T Consensus 160 vGTn~G~v~~fkIlp~~-------~g~f~v~~~~~~~~~~~~i~-------~-I~~i~~~~G~~a~At~~~~~~l~~g~~ 224 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSS-------NGRFSVQFAGATTNHDSPIL-------S-IIPINADTGESALATISAMQGLSKGIS 224 (395)
T ss_dssp EEETTSEEEEEEEEE-G-------GG-EEEEEEEEE--SS-----------E-EEEEETTT--B-B-BHHHHHGGGGT--
T ss_pred EEeCCCCEEEEEEecCC-------CCceEEEEeeccccCCCceE-------E-EEEEECCCCCcccCchhHhhccccCCC
Confidence 69999999999874111 11111111111 1111111 1 44445555443221 221
Q ss_pred CCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEE-----ecCCCeEEEEecc
Q psy3710 311 DSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAF-----GADSNSIIVICAD 385 (424)
Q Consensus 311 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~~~~l~~~~~d 385 (424)
...+++++ .+..++++...+.+...+..... -....+.+ ...+..|++-..+
T Consensus 225 i~g~vVvv-Se~~irv~~~~~~k~~~K~~~~~----------------------~~~~~~~vv~~~~~~~~~~Lv~l~~~ 281 (395)
T PF08596_consen 225 IPGYVVVV-SESDIRVFKPPKSKGAHKSFDDP----------------------FLCSSASVVPTISRNGGYCLVCLFNN 281 (395)
T ss_dssp --EEEEEE--SSEEEEE-TT---EEEEE-SS-----------------------EEEEEEEEEEEE-EEEEEEEEEEETT
T ss_pred cCcEEEEE-cccceEEEeCCCCcccceeeccc----------------------cccceEEEEeecccCCceEEEEEECC
Confidence 12244444 46789999998866533211000 00112333 2356788889999
Q ss_pred CcEEEEEecCCcceeeee--------ehhhheecCCCceeeE
Q psy3710 386 GSYYKFMFNSKGECWRDV--------YIQFLEMTNDSNLLSC 419 (424)
Q Consensus 386 g~v~~~~~~~~~~~~~~~--------~~~~~~~~~d~~~l~~ 419 (424)
|.+++|.++.=.+..... +.....++++|+.+.-
T Consensus 282 G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~ 323 (395)
T PF08596_consen 282 GSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYW 323 (395)
T ss_dssp SEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE
T ss_pred CcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEE
Confidence 999999998544443322 2334557888887654
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00073 Score=62.76 Aligned_cols=180 Identities=14% Similarity=0.194 Sum_probs=117.6
Q ss_pred CCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECC
Q psy3710 10 KNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL 88 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~ 88 (424)
.+.+.|++++ +++||.|+-+| |++++.+..- .. .-.|... ..+|.++++++ .||+|.|-.+-
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~-~~~~s~~------~~~Gey~asCS-------~DGkv~I~sl~ 101 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KT-NFDHSSS------ILEGEYVASCS-------DDGKVVIGSLF 101 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc-cc-ccccccc------ccCCceEEEec-------CCCcEEEeecc
Confidence 3456666665 45899999998 9999865432 11 1112222 56789999999 68999999999
Q ss_pred CCcEEEEEeecCCeEEEEecCC------ceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEee
Q psy3710 89 KKQVVICLEFNAPVKGVRLRRD------KIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPG 160 (424)
Q Consensus 89 ~~~~~~~~~~~~~v~~~~~~~~------~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (424)
+.+...++.+..++.+++++|+ +.+++. .| +.++.-+ -.........+.....+.++.|. |.+||. +
T Consensus 102 ~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~-wlgnk~~v~l~~~eG~I~~i~W~--g~lIAW-a 176 (846)
T KOG2066|consen 102 TDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN-WLGNKDSVVLSEGEGPIHSIKWR--GNLIAW-A 176 (846)
T ss_pred CCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhh-hhcCccceeeecCccceEEEEec--CcEEEE-e
Confidence 9999999999999999999998 233333 33 6665432 11111222344444558888884 778887 5
Q ss_pred ccCCeEEEEeCCCCCCCCcccccccCC------eEEEEEccCCCEEEEEecCCcEEEEEECC
Q psy3710 161 RKSGHVHLVDLADPERPPLDIAAHEAP------LSCIALNQTGTRLATASYKGTLIRVFDTG 216 (424)
Q Consensus 161 ~~dg~i~i~d~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 216 (424)
+ |--|++||..+. +.+..+...... -..+.|.++ ..|+.|-.|. |++..++
T Consensus 177 n-d~Gv~vyd~~~~-~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d~--v~i~~I~ 233 (846)
T KOG2066|consen 177 N-DDGVKVYDTPTR-QRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGDS--VKICSIK 233 (846)
T ss_pred c-CCCcEEEecccc-ceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCCe--EEEEEEe
Confidence 4 445899999886 333333322222 345677765 4566665544 8888887
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.017 Score=52.33 Aligned_cols=193 Identities=16% Similarity=0.184 Sum_probs=107.5
Q ss_pred cEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCC-----CCCcccccccCCeEEEEE
Q psy3710 119 LIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE-----RPPLDIAAHEAPLSCIAL 193 (424)
Q Consensus 119 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~v~~~~~ 193 (424)
.|++|+. .++++..+.-.. ..+..+.|+.+..++++ ..||.+++||+.... ..+....-....+....+
T Consensus 62 ~I~iys~--sG~ll~~i~w~~--~~iv~~~wt~~e~LvvV--~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSS--SGKLLSSIPWDS--GRIVGMGWTDDEELVVV--QSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECC--CCCEeEEEEECC--CCEEEEEECCCCeEEEE--EcCCEEEEEeCCCceeechhhhccccCccccccccccc
Confidence 4889986 577777766655 45889999987776665 799999999997431 011111111222333344
Q ss_pred ccCCCEEEEEecCCcEEEEEECCCcc-eeeEE---eccee----------eeeecCCCCeEEEEeecCCeEEEEeCCCCC
Q psy3710 194 NQTGTRLATASYKGTLIRVFDTGSGQ-KLNEL---RRGLC----------VLCPNSNNSLLAFPGRKSGHVHLVDLADPE 259 (424)
Q Consensus 194 ~~~~~~l~~~~~d~~~i~iwd~~~~~-~~~~~---~~~~~----------~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 259 (424)
..+|-.++ ..++. +.+.+-.... ..+.+ +.... ...+..+....+. ...++.+++.+-....
T Consensus 136 ~~~GivvL--t~~~~-~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~-~~~g~~i~~i~~~~~~ 211 (410)
T PF04841_consen 136 YKNGIVVL--TGNNR-FYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEIL-LANGETIYIIDENSFK 211 (410)
T ss_pred CCCCEEEE--CCCCe-EEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEE-EecCCEEEEEEccccc
Confidence 44553333 33444 4433322211 11111 11100 0112222222222 3445566645433321
Q ss_pred CCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeeccC----CcEEEEEeCCCcEEEE
Q psy3710 260 RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRD----SSYLCVSSDHGTVHVF 327 (424)
Q Consensus 260 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~----~~~l~~~~~d~~i~iw 327 (424)
. + ...+++..|+.||+|+++|.-..+|. +.+.+..-.+.+.++.-+ ...++=++.|..+--|
T Consensus 212 ~----i-~~~~~i~~iavSpng~~iAl~t~~g~-l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~ 277 (410)
T PF04841_consen 212 Q----I-DSDGPIIKIAVSPNGKFIALFTDSGN-LWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW 277 (410)
T ss_pred c----c-cCCCCeEEEEECCCCCEEEEEECCCC-EEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe
Confidence 1 1 23468999999999999999999999 888887666666655432 3456666666656666
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0096 Score=49.25 Aligned_cols=192 Identities=14% Similarity=0.106 Sum_probs=102.6
Q ss_pred cCCeEEEEecCCce-EEEe-e--ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCC
Q psy3710 99 NAPVKGVRLRRDKI-VVVL-E--GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADP 174 (424)
Q Consensus 99 ~~~v~~~~~~~~~~-~~~~-~--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~ 174 (424)
...+.++.|+|+.. +++. | +.|..++ ..++.+..+.... ....-.+++..++.++++ .-.++.+.++++...
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els--~~G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~-~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELS--LDGKVLRRIPLDG-FGDYEGITYLGNGRYVLS-EERDQRLYIFTIDDD 96 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEE--TT--EEEEEE-SS--SSEEEEEE-STTEEEEE-ETTTTEEEEEEE---
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEc--CCCCEEEEEeCCC-CCCceeEEEECCCEEEEE-EcCCCcEEEEEEecc
Confidence 45699999999754 4444 4 4554445 4677777765543 122445566666766665 566899999998543
Q ss_pred CCCCc-----cc-----ccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCC---cceeeEE-----------ecceee
Q psy3710 175 ERPPL-----DI-----AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS---GQKLNEL-----------RRGLCV 230 (424)
Q Consensus 175 ~~~~~-----~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~---~~~~~~~-----------~~~~~~ 230 (424)
...+. .+ ..++..+-.++|+|.++.|+.+-...- ..++.+.. ...+... ......
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~ 175 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP-KRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG 175 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS-EEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC-hhhEEEccccCccceeeccccccccccceeccccc
Confidence 22211 11 134566899999998888888877766 67776653 2211111 122567
Q ss_pred eeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeecc-------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy3710 231 LCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAA-------HEAPLSCIALNQTGTRLATASYKGTLIRVF 297 (424)
Q Consensus 231 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~~i~iw 297 (424)
++++|..+.+++-+..+..|..+|....-.....+.. .-...-.|+|.++|++.+ .+..+. ..+|
T Consensus 176 l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNl-fy~f 247 (248)
T PF06977_consen 176 LSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNL-FYRF 247 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTE-EEEE
T ss_pred eEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCce-EEEe
Confidence 8889988888887888889999984432111112211 113578899999985444 444444 4443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.02 Score=51.37 Aligned_cols=248 Identities=15% Similarity=0.143 Sum_probs=159.3
Q ss_pred EEEEECCCCcEEEEEeecCCeEEEEecCCce-EEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEE
Q psy3710 82 VMIWDDLKKQVVICLEFNAPVKGVRLRRDKI-VVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLA 157 (424)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (424)
+.+++..+......+........+.+.+++. ..+. ...+...+.. ........... ...-..+..++.+..+.
T Consensus 13 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g--~~~p~~i~v~~~~~~vy 89 (381)
T COG3391 13 VSVINTGTNKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVG--GVYPAGVAVNPAGNKVY 89 (381)
T ss_pred eEEEeecccEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCC--CccccceeeCCCCCeEE
Confidence 6666666666666666445667778888773 3332 2234444432 11111111111 02233557778888666
Q ss_pred EeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEec---CCcEEEEEECCCcceeeEEecc--eeeee
Q psy3710 158 FPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY---KGTLIRVFDTGSGQKLNELRRG--LCVLC 232 (424)
Q Consensus 158 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~~i~iwd~~~~~~~~~~~~~--~~~~~ 232 (424)
+....++.|.+.|.... ....... -......++++|+++.+..+.. ++. +.+.|..+++.......+ ...++
T Consensus 90 v~~~~~~~v~vid~~~~-~~~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~-vsvid~~t~~~~~~~~vG~~P~~~a 166 (381)
T COG3391 90 VTTGDSNTVSVIDTATN-TVLGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNT-VSVIDAATNKVTATIPVGNTPTGVA 166 (381)
T ss_pred EecCCCCeEEEEcCccc-ceeeEee-eccCCceEEECCCCCEEEEEecccCCce-EEEEeCCCCeEEEEEecCCCcceEE
Confidence 64666799999997764 2222222 1225678999999988877766 567 999999988888776543 46789
Q ss_pred ecCCCCeEEEEeecCCeEEEEeCCCCCCCCee---eccCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEECCCCceee
Q psy3710 233 PNSNNSLLAFPGRKSGHVHLVDLADPERPPLD---IAAHEAPLSCIALNQTGTRLATASYK---GTLIRVFDTGSGQKLN 306 (424)
Q Consensus 233 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d---~~~i~iwd~~~~~~~~ 306 (424)
+.|++..++++-..++.|.++|.......... ...-......++++|+|.++...... +. +...|..++....
T Consensus 167 ~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~-v~~id~~~~~v~~ 245 (381)
T COG3391 167 VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN-VLKIDTATGNVTA 245 (381)
T ss_pred ECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce-EEEEeCCCceEEE
Confidence 99999999988889999999997665422100 01223345678999999977666554 46 8888888765544
Q ss_pred -------------eeccCCcEEEEEeC-CCcEEEEEcccccccc
Q psy3710 307 -------------ELRRDSSYLCVSSD-HGTVHVFSVDEAQKIN 336 (424)
Q Consensus 307 -------------~~~~~~~~l~~~~~-d~~i~iw~~~~~~~~~ 336 (424)
.+.|+|+.+.+... .+.+.+-|..+.....
T Consensus 246 ~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 246 TDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred eccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceee
Confidence 34577877777644 4788888887755544
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0045 Score=43.23 Aligned_cols=86 Identities=13% Similarity=0.166 Sum_probs=60.3
Q ss_pred CCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCe
Q psy3710 78 PNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSL 155 (424)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (424)
.|..|++|+ ..+.+.++...+.|.++.-...+.+... +|+|-+|+- ...+...+....+..+.....+.||..
T Consensus 23 ~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~---~~RlWRiKSK~~~~~~~~~D~~gdG~~ 97 (111)
T PF14783_consen 23 DDFEIRVFK--GDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR---SQRLWRIKSKNQVTSMAFYDINGDGVP 97 (111)
T ss_pred CCcEEEEEe--CCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC---cceeeeeccCCCeEEEEEEcCCCCCce
Confidence 589999998 4578888888899999988877766654 899999984 344555555444444444555555544
Q ss_pred EEEeeccCCeEEE
Q psy3710 156 LAFPGRKSGHVHL 168 (424)
Q Consensus 156 l~~~~~~dg~i~i 168 (424)
-+++|-.+|.|-+
T Consensus 98 eLI~GwsnGkve~ 110 (111)
T PF14783_consen 98 ELIVGWSNGKVEV 110 (111)
T ss_pred EEEEEecCCeEEe
Confidence 3333999998753
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.3e-05 Score=71.84 Aligned_cols=199 Identities=15% Similarity=0.089 Sum_probs=120.7
Q ss_pred CCceEEEEECCCC--CeeEeecCCe-EEEEeCCcCcc--cccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEE
Q psy3710 10 KNGLLYAGFNQDQ--GCFACGMEDG-FRIYNCDPLKE--KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMI 84 (424)
Q Consensus 10 ~~~V~~~~~s~~g--~~la~g~~~~-i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 84 (424)
...+.|++++-+. ..+++|..+| |.+-......- ......+....++++|.+-..-.+.+|-.. .-.|..+.|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldk--hrnds~~~I 133 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDK--HRNDSSLKI 133 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhh--hcccCCccc
Confidence 4567888876654 4677899889 77776543322 122223455677788876543333343221 114778999
Q ss_pred EECCCC--cEEEEEe----ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecC-CCC
Q psy3710 85 WDDLKK--QVVICLE----FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNS-NNS 154 (424)
Q Consensus 85 wd~~~~--~~~~~~~----~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 154 (424)
||..++ .+..... ......+++|..+..++.+ ...+.++|++........+.... +..+..+| .+.
T Consensus 134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~----vqG~tVdp~~~n 209 (783)
T KOG1008|consen 134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKY----VQGITVDPFSPN 209 (783)
T ss_pred eecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhh----cccceecCCCCC
Confidence 999876 2222222 2334567888877766655 66899999974433333332211 22334455 455
Q ss_pred eEEEeeccCCeEEEEe-CCCCCCCCcccccccC----CeEEEEEccCC-CEEEEEecCCcEEEEEECC
Q psy3710 155 LLAFPGRKSGHVHLVD-LADPERPPLDIAAHEA----PLSCIALNQTG-TRLATASYKGTLIRVFDTG 216 (424)
Q Consensus 155 ~l~~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~----~v~~~~~~~~~-~~l~~~~~d~~~i~iwd~~ 216 (424)
+++ ...||.|.+|| ..+-+.++..+...+. .+..++|+|.. ..+++.+.|..+|+.+|+.
T Consensus 210 Y~c--s~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 210 YFC--SNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cee--ccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 666 56799999999 4443344444433333 48999999953 3667777776559999985
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.023 Score=48.84 Aligned_cols=213 Identities=13% Similarity=0.101 Sum_probs=125.0
Q ss_pred EECCCCCeeE-eecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEE
Q psy3710 17 GFNQDQGCFA-CGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVI 94 (424)
Q Consensus 17 ~~s~~g~~la-~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 94 (424)
.|.++...|. +.-.++ |.-|+..+++... ... .+.+..+.....+..|+++. ..+.+++.+++..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~-p~~~~~~~~~d~~g~Lv~~~---------~g~~~~~~~~~~~~t 99 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-FPS-PGGFSSGALIDAGGRLIACE---------HGVRLLDPDTGGKIT 99 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EEC-CCCcccceeecCCCeEEEEc---------cccEEEeccCCceeE
Confidence 5677776555 555555 8888877665422 222 23344455555555555554 567788877666643
Q ss_pred EEe--e----cCCeEEEEecCCceEEEeecc------------EEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeE
Q psy3710 95 CLE--F----NAPVKGVRLRRDKIVVVLEGL------------IKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLL 156 (424)
Q Consensus 95 ~~~--~----~~~v~~~~~~~~~~~~~~~~~------------i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (424)
.+. . ....+.....|+|.+.+.+-. -.+|-+...+.....+..+ ......++||||++.+
T Consensus 100 ~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~--~~~~NGla~SpDg~tl 177 (307)
T COG3386 100 LLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDD--LTIPNGLAFSPDGKTL 177 (307)
T ss_pred EeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCc--EEecCceEECCCCCEE
Confidence 332 1 235567888888877665211 1355554334444433332 1234578999999988
Q ss_pred EEeeccCCeEEEEeCCC--C---CC-CCcccccccCCeEEEEEccCCCEEEEEecCC-cEEEEEECCCcceeeEEecc--
Q psy3710 157 AFPGRKSGHVHLVDLAD--P---ER-PPLDIAAHEAPLSCIALNQTGTRLATASYKG-TLIRVFDTGSGQKLNELRRG-- 227 (424)
Q Consensus 157 ~~~~~~dg~i~i~d~~~--~---~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~~i~iwd~~~~~~~~~~~~~-- 227 (424)
.++=+..+.|.-|++.. + .+ ....+....+..-.++...+|.+.+++..+| . |..|+.. ++.+..+..+
T Consensus 178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~-v~~~~pd-G~l~~~i~lP~~ 255 (307)
T COG3386 178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGR-VVRFNPD-GKLLGEIKLPVK 255 (307)
T ss_pred EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCce-EEEECCC-CcEEEEEECCCC
Confidence 88556668888888762 1 01 1112223446666778888888776555554 6 9999987 8888888766
Q ss_pred -eeeeee-cCCCCeEEEEe
Q psy3710 228 -LCVLCP-NSNNSLLAFPG 244 (424)
Q Consensus 228 -~~~~~~-~~~~~~~~~~~ 244 (424)
....+| .++.+.+++++
T Consensus 256 ~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 256 RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCccceEeCCCcCEEEEEe
Confidence 233344 23344555543
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.019 Score=47.60 Aligned_cols=191 Identities=10% Similarity=0.052 Sum_probs=110.7
Q ss_pred CCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEee--cCCeEEEEecCCceEEEe---eccEEEEee
Q psy3710 51 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEF--NAPVKGVRLRRDKIVVVL---EGLIKVYTF 125 (424)
Q Consensus 51 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~---~~~i~v~~~ 125 (424)
...++.++|.|+.+.|+++... ++.|...+. +|+.++++.. -+...++++..++.++.. ++.+.++++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~------~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDE------PGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETT------TTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECC------CCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 3458999999999989888864 588888886 6899998884 467899999998888876 578888888
Q ss_pred cCCCce-----eEEEe--eC-CCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCC--CCCCCcc--------cccccCC
Q psy3710 126 IQCPQQ-----LHVFE--TN-PNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLAD--PERPPLD--------IAAHEAP 187 (424)
Q Consensus 126 ~~~~~~-----~~~~~--~~-~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~--~~~~~~~--------~~~~~~~ 187 (424)
....+. ...+. .. .+..+.-.++|++.++.|++ +-+..-..+|.++. ....... .......
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v-~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV-AKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEE-EEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEE-EeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 422211 12222 11 23355778999998888887 77776667776654 1111110 1123456
Q ss_pred eEEEEEccCCCE-EEEEecCCcEEEEEECCCcceeeEEe--c----------ceeeeeecCCCCeEEEEeecCCeEEEE
Q psy3710 188 LSCIALNQTGTR-LATASYKGTLIRVFDTGSGQKLNELR--R----------GLCVLCPNSNNSLLAFPGRKSGHVHLV 253 (424)
Q Consensus 188 v~~~~~~~~~~~-l~~~~~d~~~i~iwd~~~~~~~~~~~--~----------~~~~~~~~~~~~~~~~~~~~dg~i~i~ 253 (424)
+.+++++|.... ++.+..... |..+| .+|+.+..+. . ....+++.++|..+++ ++.+..++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~-l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv--sEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRL-LLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV--SEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTE-EEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE--ETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCe-EEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE--cCCceEEEe
Confidence 789999996554 455555555 88889 5777665443 2 2456788887755554 345554443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0095 Score=53.22 Aligned_cols=269 Identities=12% Similarity=0.110 Sum_probs=118.3
Q ss_pred ceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccc-cCCC--eeeEEEeccCceEEEEeCCcCCCcCCCeEEEEEC
Q psy3710 12 GLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDF-TDGG--LGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDD 87 (424)
Q Consensus 12 ~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~-~~~~--i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~ 87 (424)
.|+.+.|+++..-||+|...| |.||.....+....... .... ...+........|.-++.- .+.. +
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r-----~~~~-----~ 72 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDR-----APPS-----L 72 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG-------TT------
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhh-----CCcc-----c
Confidence 589999999988999999889 88888665443220000 0000 0001111111222222210 0000 0
Q ss_pred CCC-cEEEEEe-ecCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCC------CCCeeEEEeec-----CC
Q psy3710 88 LKK-QVVICLE-FNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNP------NPKGLCVLCPN-----SN 152 (424)
Q Consensus 88 ~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-----~~ 152 (424)
+.| .+...+. ..++|.+++.+.-|...+. +|.+.|.|++ ....+..-.... ....+.++.|. .|
T Consensus 73 ~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~R-GPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D 151 (395)
T PF08596_consen 73 KEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLR-GPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGD 151 (395)
T ss_dssp SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETT-TTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTS
T ss_pred ccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECC-CCeEEeeccccccccccccccCeeEEEEEEEecCCC
Confidence 111 1122222 3789999999988865554 8999999997 666555422222 22234444442 23
Q ss_pred C---CeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEeccee
Q psy3710 153 N---SLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLC 229 (424)
Q Consensus 153 ~---~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~ 229 (424)
+ -.+++ |...|.+.+|.+.-... ..+. ..........++..+ . |...|..+++........+.
T Consensus 152 ~ySSi~L~v-GTn~G~v~~fkIlp~~~--g~f~---v~~~~~~~~~~~~i~-------~-I~~i~~~~G~~a~At~~~~~ 217 (395)
T PF08596_consen 152 GYSSICLLV-GTNSGNVLTFKILPSSN--GRFS---VQFAGATTNHDSPIL-------S-IIPINADTGESALATISAMQ 217 (395)
T ss_dssp SSEEEEEEE-EETTSEEEEEEEEE-GG--G-EE---EEEEEEE--SS-----------E-EEEEETTT--B-B-BHHHHH
T ss_pred cccceEEEE-EeCCCCEEEEEEecCCC--CceE---EEEeeccccCCCceE-------E-EEEEECCCCCcccCchhHhh
Confidence 2 34555 88999999998752101 1111 000111101111111 1 33344444433222111110
Q ss_pred eeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEE-----cCCCCEEEEEeCCCcEEEEEECCCCce
Q psy3710 230 VLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIAL-----NQTGTRLATASYKGTLIRVFDTGSGQK 304 (424)
Q Consensus 230 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~d~~~i~iwd~~~~~~ 304 (424)
.+.-...-..+++ ...+..++++...+.+...+.+ ...-....+.+ ...+..|++-..+|. |+++.+..-+.
T Consensus 218 ~l~~g~~i~g~vV-vvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~-i~i~SLP~Lke 294 (395)
T PF08596_consen 218 GLSKGISIPGYVV-VVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGS-IRIYSLPSLKE 294 (395)
T ss_dssp GGGGT----EEEE-EE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSE-EEEEETTT--E
T ss_pred ccccCCCcCcEEE-EEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCc-EEEEECCCchH
Confidence 0000001112222 4557889999888766433333 11122233444 235678889999999 99999999888
Q ss_pred eeee
Q psy3710 305 LNEL 308 (424)
Q Consensus 305 ~~~~ 308 (424)
+..+
T Consensus 295 i~~~ 298 (395)
T PF08596_consen 295 IKSV 298 (395)
T ss_dssp EEEE
T ss_pred hhcc
Confidence 7754
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.02 Score=47.16 Aligned_cols=177 Identities=16% Similarity=0.119 Sum_probs=113.9
Q ss_pred eeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCe--EEEEecCCceEEEe--eccEEEEeecCCC
Q psy3710 54 LGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPV--KGVRLRRDKIVVVL--EGLIKVYTFIQCP 129 (424)
Q Consensus 54 i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~--~~~i~v~~~~~~~ 129 (424)
...+.+..++..+-+.+.- ....|+.+|+.+|+.......+... ..+....|..+..+ ++...+||.. +.
T Consensus 47 TQGL~~~~~g~LyESTG~y-----G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~-tl 120 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLY-----GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPN-TL 120 (264)
T ss_dssp EEEEEEEETTEEEEEECST-----TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETT-TT
T ss_pred CccEEecCCCEEEEeCCCC-----CcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccc-cc
Confidence 3446666666666555543 3579999999999999888866554 35777777777776 8999999986 77
Q ss_pred ceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccc-----cCCeEEEEEccCCCEEEEEe
Q psy3710 130 QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAH-----EAPLSCIALNQTGTRLATAS 204 (424)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~ 204 (424)
+.+.++...... ..++ .+++.|+. +.....++++|..+. +....+.-. -..++.+.+. +|...+-.-
T Consensus 121 ~~~~~~~y~~EG---WGLt--~dg~~Li~-SDGS~~L~~~dP~~f-~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW 192 (264)
T PF05096_consen 121 KKIGTFPYPGEG---WGLT--SDGKRLIM-SDGSSRLYFLDPETF-KEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW 192 (264)
T ss_dssp EEEEEEE-SSS-----EEE--ECSSCEEE-E-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET
T ss_pred eEEEEEecCCcc---eEEE--cCCCEEEE-ECCccceEEECCccc-ceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC
Confidence 777777655322 3333 46777777 566778999998764 333333221 2245566665 565555555
Q ss_pred cCCcEEEEEECCCcceeeEEec-----------------c-eeeeeecCCCCeEEEEee
Q psy3710 205 YKGTLIRVFDTGSGQKLNELRR-----------------G-LCVLCPNSNNSLLAFPGR 245 (424)
Q Consensus 205 ~d~~~i~iwd~~~~~~~~~~~~-----------------~-~~~~~~~~~~~~~~~~~~ 245 (424)
.... |...|..+|+....+.. . .+.+++.|..+.++++|-
T Consensus 193 ~td~-I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 193 QTDR-IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp TSSE-EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCCe-EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 5566 88889999988776631 1 466889999999988774
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.035 Score=48.72 Aligned_cols=186 Identities=11% Similarity=0.132 Sum_probs=108.6
Q ss_pred eEEEEECCC----CCeeEeecC---------C-e-EEEEeCCcC-----cc--cccccccCCCeeeEEEeccCceEEEEe
Q psy3710 13 LLYAGFNQD----QGCFACGME---------D-G-FRIYNCDPL-----KE--KERQDFTDGGLGHVEMLFRCNYLALVG 70 (424)
Q Consensus 13 V~~~~~s~~----g~~la~g~~---------~-~-i~iw~~~~~-----~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~ 70 (424)
+..+.|..+ ..+|++|+. . | |.++++... +. +.... ..++|.+++-. +++++.+.
T Consensus 29 ~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~-~~g~V~ai~~~--~~~lv~~~ 105 (321)
T PF03178_consen 29 LCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE-VKGPVTAICSF--NGRLVVAV 105 (321)
T ss_dssp EEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE-ESS-EEEEEEE--TTEEEEEE
T ss_pred EEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe-ecCcceEhhhh--CCEEEEee
Confidence 334445443 467776643 2 6 999998874 22 22222 37788777766 44455555
Q ss_pred CCcCCCcCCCeEEEEECCCCc-EEEEEe--ecCCeEEEEecCCceEEEe-eccEEEEeecCCCceeEEEeeCCCCCeeEE
Q psy3710 71 GGTHPKYPNNRVMIWDDLKKQ-VVICLE--FNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNPKGLCV 146 (424)
Q Consensus 71 ~~~~~~~~d~~i~iwd~~~~~-~~~~~~--~~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 146 (424)
.+.|.+|++...+ ....-. .+..+.++....+..+++- -..+.++.++.....+..+.....+..+.+
T Consensus 106 --------g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~ 177 (321)
T PF03178_consen 106 --------GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTA 177 (321)
T ss_dssp --------TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEE
T ss_pred --------cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEE
Confidence 3799999998877 554444 3456777777766444443 567888877644555666666566677888
Q ss_pred EeecCCCCeEEEeeccCCeEEEEeCCCCC-----CC-Cc--cccc-ccCCeEEE---EEcc--CCC------EEEEEecC
Q psy3710 147 LCPNSNNSLLAFPGRKSGHVHLVDLADPE-----RP-PL--DIAA-HEAPLSCI---ALNQ--TGT------RLATASYK 206 (424)
Q Consensus 147 ~~~~~~~~~l~~~~~~dg~i~i~d~~~~~-----~~-~~--~~~~-~~~~v~~~---~~~~--~~~------~l~~~~~d 206 (424)
..+-++++.+++ +..+|.+.++...... .. .. ...- ....|+++ .+.| .+. .++.++.+
T Consensus 178 ~~~l~d~~~~i~-~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~ 256 (321)
T PF03178_consen 178 AEFLVDEDTIIV-GDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVD 256 (321)
T ss_dssp EEEE-SSSEEEE-EETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETT
T ss_pred EEEecCCcEEEE-EcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecC
Confidence 887755567776 9999999999876310 11 11 1111 23556666 4445 122 37778888
Q ss_pred CcEEE
Q psy3710 207 GTLIR 211 (424)
Q Consensus 207 ~~~i~ 211 (424)
|. |.
T Consensus 257 G~-Ig 260 (321)
T PF03178_consen 257 GS-IG 260 (321)
T ss_dssp S--EE
T ss_pred CE-EE
Confidence 88 66
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.023 Score=50.14 Aligned_cols=224 Identities=13% Similarity=0.121 Sum_probs=91.9
Q ss_pred CCCCeEEEeeccCCeEEEEeCCCCCCCCc---cccc---cc----CCeEEEEEccCCCEEEEEecC------CcEEEEEE
Q psy3710 151 SNNSLLAFPGRKSGHVHLVDLADPERPPL---DIAA---HE----APLSCIALNQTGTRLATASYK------GTLIRVFD 214 (424)
Q Consensus 151 ~~~~~l~~~~~~dg~i~i~d~~~~~~~~~---~~~~---~~----~~v~~~~~~~~~~~l~~~~~d------~~~i~iwd 214 (424)
.+.++|++.|-.++.|.+.|+.+.....+ .++. +. ..-..+.--|+|+.++++-.| |. +.+.|
T Consensus 85 ~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Gg-f~llD 163 (461)
T PF05694_consen 85 KERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGG-FVLLD 163 (461)
T ss_dssp --S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--E-EEEE-
T ss_pred ccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCc-EEEEc
Confidence 35678888677899999999986422222 1111 11 122333345688888775332 33 56666
Q ss_pred CCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeC-----
Q psy3710 215 TGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY----- 289 (424)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----- 289 (424)
-++.+.....+.+ .. ...--....|.|..+.++|...
T Consensus 164 ~~tf~v~g~We~~-----------------------------~~---------~~~~gYDfw~qpr~nvMiSSeWg~P~~ 205 (461)
T PF05694_consen 164 GETFEVKGRWEKD-----------------------------RG---------PQPFGYDFWYQPRHNVMISSEWGAPSM 205 (461)
T ss_dssp TTT--EEEE--SB------------------------------T---------T------EEEETTTTEEEE-B---HHH
T ss_pred CccccccceeccC-----------------------------CC---------CCCCCCCeEEcCCCCEEEEeccCChhh
Confidence 6555444333321 10 0111233444444444444432
Q ss_pred ---------------CCcEEEEEECCCCceeeeec----------------cCCcEE-EEEeCCCcEEEEEc-ccccccc
Q psy3710 290 ---------------KGTLIRVFDTGSGQKLNELR----------------RDSSYL-CVSSDHGTVHVFSV-DEAQKIN 336 (424)
Q Consensus 290 ---------------d~~~i~iwd~~~~~~~~~~~----------------~~~~~l-~~~~~d~~i~iw~~-~~~~~~~ 336 (424)
..+ +.+||+.+.+.++++. |+..+- +.+.-.++|..|-- +.++- .
T Consensus 206 ~~~Gf~~~d~~~~~yG~~-l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W-~ 283 (461)
T PF05694_consen 206 FEKGFNPEDLEAGKYGHS-LHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEW-A 283 (461)
T ss_dssp HTT---TTTHHHH-S--E-EEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEE-E
T ss_pred cccCCChhHhhcccccCe-EEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCe-e
Confidence 334 9999999999988764 333332 22223444444433 33321 1
Q ss_pred ccccceeeeccCccccCCceeeE----EeecCCCceEEEEecCCCeEEEEec-cCcEEEEEecCCcceeeeee-------
Q psy3710 337 KQSSLASASFLPKYFSSSWSFCK----FQIPSDPPCICAFGADSNSIIVICA-DGSYYKFMFNSKGECWRDVY------- 404 (424)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~~~~~~~~~~~~~~~~------- 404 (424)
. ..+.-.|......|.+-. +..-..-++++..|.|.++|++.+- +|.|+.||+..........+
T Consensus 284 a----~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~ 359 (461)
T PF05694_consen 284 A----EKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSI 359 (461)
T ss_dssp E----EEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTT
T ss_pred e----eEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEe
Confidence 1 111112221122232110 1122355789999999999977654 99999999986433322111
Q ss_pred ----------------hhhheecCCCceeeE
Q psy3710 405 ----------------IQFLEMTNDSNLLSC 419 (424)
Q Consensus 405 ----------------~~~~~~~~d~~~l~~ 419 (424)
.+-+++|.||+.|-.
T Consensus 360 ~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYv 390 (461)
T PF05694_consen 360 RKGDHPVVKGKRLRGGPQMVQLSLDGKRLYV 390 (461)
T ss_dssp T-B--TTS------S----EEE-TTSSEEEE
T ss_pred ccCCCccccccccCCCCCeEEEccCCeEEEE
Confidence 145678889977643
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0012 Score=58.45 Aligned_cols=144 Identities=11% Similarity=0.158 Sum_probs=99.2
Q ss_pred cCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCC--E-----EEEEecCCcEEEEEECCCcce--
Q psy3710 150 NSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT--R-----LATASYKGTLIRVFDTGSGQK-- 220 (424)
Q Consensus 150 ~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~-----l~~~~~d~~~i~iwd~~~~~~-- 220 (424)
..+.++|+.++.....++-.|++.+ +.+..+.-|.. |.-+.+.|+.+ . -+.|-.+.. |.-||.+-...
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~G-KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~-vfriDpRv~~~~k 418 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERG-KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNS-VFRIDPRVQGKNK 418 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccc-eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCc-eEEecccccCcce
Confidence 4456677776888888999999987 77777776666 77777877643 1 234445666 89999874322
Q ss_pred e-----eEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q psy3710 221 L-----NELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIR 295 (424)
Q Consensus 221 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~ 295 (424)
+ +.+......-|+...+.-.++.|+.+|.|++||. .+......+++...+|..+..+.||++|+..+..- +.
T Consensus 419 l~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ty--Ll 495 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTY--LL 495 (644)
T ss_pred eeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccE--EE
Confidence 1 1222333334444444444555999999999998 55555667788999999999999999988766544 55
Q ss_pred EEEC
Q psy3710 296 VFDT 299 (424)
Q Consensus 296 iwd~ 299 (424)
+.++
T Consensus 496 Li~t 499 (644)
T KOG2395|consen 496 LIDT 499 (644)
T ss_pred EEEE
Confidence 5554
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.017 Score=47.48 Aligned_cols=101 Identities=20% Similarity=0.147 Sum_probs=74.9
Q ss_pred EEEEEccCC-CEEEEEecCCcEEEEEECCCcceeeEEecc-----eeeeeecCCCCeEEEEee----cCCeEEEEeCCCC
Q psy3710 189 SCIALNQTG-TRLATASYKGTLIRVFDTGSGQKLNELRRG-----LCVLCPNSNNSLLAFPGR----KSGHVHLVDLADP 258 (424)
Q Consensus 189 ~~~~~~~~~-~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----~dg~i~i~d~~~~ 258 (424)
..++|+|.. .-++.+-.-|+...++|....+....+... ...=+|+++|..+.++-. .-|.|-+||.+..
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 467777753 456666667776889999888766665532 233478999998887532 3478999999977
Q ss_pred CCCCeeeccCCCCeEEEEEcCCCCEEEEEeC
Q psy3710 259 ERPPLDIAAHEAPLSCIALNQTGTRLATASY 289 (424)
Q Consensus 259 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 289 (424)
-..+-.+..|.-....+.+.+||+.++.+..
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 6666777788888889999999999887754
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=97.52 E-value=5.3e-05 Score=68.14 Aligned_cols=180 Identities=15% Similarity=0.134 Sum_probs=112.9
Q ss_pred eccEEEEeecCCCce-eEEEeeCCCCCeeEEEeecCC-CCeEEEeec----cCCeEEEEeCCCCCCCCc---cccc-ccC
Q psy3710 117 EGLIKVYTFIQCPQQ-LHVFETNPNPKGLCVLCPNSN-NSLLAFPGR----KSGHVHLVDLADPERPPL---DIAA-HEA 186 (424)
Q Consensus 117 ~~~i~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~----~dg~i~i~d~~~~~~~~~---~~~~-~~~ 186 (424)
+|.|.+-..+..... ......+. ..+.+++|++- ...||+ |- .|..+.|||+.+.-.... .+.+ ...
T Consensus 79 tG~I~l~s~r~~hdSs~E~tp~~a--r~Ct~lAwneLDtn~LAa-gldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~ 155 (783)
T KOG1008|consen 79 TGNISLLSVRHPHDSSAEVTPGYA--RPCTSLAWNELDTNHLAA-GLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLD 155 (783)
T ss_pred cCceEEeecCCcccccceeccccc--ccccccccccccHHHHHh-hhhhhcccCCccceecccccCCCcccccccccccc
Confidence 788888877633322 22223333 44778888764 455654 53 356799999987511111 1222 334
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEEECCCc-ceeeEEec-ceeeeeecCCCCeEEEEeecCCeEEEEe-CCCCCCCCe
Q psy3710 187 PLSCIALNQTGTRLATASYKGTLIRVFDTGSG-QKLNELRR-GLCVLCPNSNNSLLAFPGRKSGHVHLVD-LADPERPPL 263 (424)
Q Consensus 187 ~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dg~i~i~d-~~~~~~~~~ 263 (424)
...+++|..+.+.+++|..... +.++|++.. .....+.. -+..+.+.|-....++ ...||.|.+|| .++-+.+..
T Consensus 156 gqns~cwlrd~klvlaGm~sr~-~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~c-s~~dg~iAiwD~~rnienpl~ 233 (783)
T KOG1008|consen 156 GQNSVCWLRDTKLVLAGMTSRS-VHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFC-SNSDGDIAIWDTYRNIENPLQ 233 (783)
T ss_pred CccccccccCcchhhcccccch-hhhhhhhhhhhhhhhhhhhhcccceecCCCCCcee-ccccCceeeccchhhhccHHH
Confidence 4568889888889999998888 999999833 22333333 2455667774444444 56699999999 555554444
Q ss_pred eeccCCC----CeEEEEEcCCC-CEEEEEeCCCcEEEEEECCC
Q psy3710 264 DIAAHEA----PLSCIALNQTG-TRLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 264 ~~~~~~~----~v~~~~~~~~~-~~l~~~~~d~~~i~iwd~~~ 301 (424)
.+...+. .+..++|.|.. ..+++...|...|+++|+..
T Consensus 234 ~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 234 IILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred HHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 4433333 48999999943 36677777655499998853
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.019 Score=54.31 Aligned_cols=188 Identities=12% Similarity=0.058 Sum_probs=101.7
Q ss_pred CceEEEEECCCCCeeEeec------CCe---EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCC-----C
Q psy3710 11 NGLLYAGFNQDQGCFACGM------EDG---FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHP-----K 76 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la~g~------~~~---i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~-----~ 76 (424)
..+...++||||+.+|... .+. |.+++. +........ ......-.|+|+++.+.++..+... .
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcceeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999988544 222 555554 222111111 2347788999999888877632100 0
Q ss_pred cCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe--eccEEEEeecC--CCc-ee---EEEeeCCCCCeeEEEe
Q psy3710 77 YPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQ--CPQ-QL---HVFETNPNPKGLCVLC 148 (424)
Q Consensus 77 ~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~--~~~-~~---~~~~~~~~~~~~~~~~ 148 (424)
...+.+.+.++..++... .....|..+.|+|||..++. ++.|.+--+.. .+. .+ ..+.. ........+.
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~-~l~~~~~~l~ 503 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGP-GLGDTAVSLD 503 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeec-ccCCccccce
Confidence 012344444554444433 44668999999999987775 77777733321 232 11 01111 1111246678
Q ss_pred ecCCCCeEEEeeccCCeEEEEeCCCCCCCCccccc--ccCCeEEEEEccCCCEEEEEecCCc
Q psy3710 149 PNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAA--HEAPLSCIALNQTGTRLATASYKGT 208 (424)
Q Consensus 149 ~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~ 208 (424)
|..++.+++ +..++.-.+|.+.-.......+.. ...++..++=+++ .++....++.
T Consensus 504 W~~~~~L~V--~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~ 561 (591)
T PRK13616 504 WRTGDSLVV--GRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAV 561 (591)
T ss_pred EecCCEEEE--EecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence 999888654 444444444543322122222222 2566777776653 4555555553
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0033 Score=55.85 Aligned_cols=144 Identities=15% Similarity=0.222 Sum_probs=98.9
Q ss_pred cCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCc---------eEEEe-eccEEEEeecCCCc-
Q psy3710 62 RCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDK---------IVVVL-EGLIKVYTFIQCPQ- 130 (424)
Q Consensus 62 ~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~---------~~~~~-~~~i~v~~~~~~~~- 130 (424)
+.+.++..++. ...++-.|++.|+.+.+......|.-+.+.|+. .+++. +..|.-||++-.+.
T Consensus 344 dsnlil~~~~~------~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~ 417 (644)
T KOG2395|consen 344 DSNLILMDGGE------QDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN 417 (644)
T ss_pred ccceEeeCCCC------cCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcc
Confidence 44555554443 578888999999999999977778888887764 34443 78999999874444
Q ss_pred eeEEEeeCCC--CCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCc
Q psy3710 131 QLHVFETNPN--PKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGT 208 (424)
Q Consensus 131 ~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 208 (424)
.+...+.+.- .....|++-..+ .+|++ |+.+|.|++||-- +.+...-+.+-..+|..+..+.+|++++..+ +..
T Consensus 418 kl~~~q~kqy~~k~nFsc~aTT~s-G~Ivv-gS~~GdIRLYdri-~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~ty 493 (644)
T KOG2395|consen 418 KLAVVQSKQYSTKNNFSCFATTES-GYIVV-GSLKGDIRLYDRI-GRRAKTALPGLGDAIKHVDVTADGKWILATC-KTY 493 (644)
T ss_pred eeeeeeccccccccccceeeecCC-ceEEE-eecCCcEEeehhh-hhhhhhcccccCCceeeEEeeccCcEEEEec-ccE
Confidence 2222233221 122345554444 46777 9999999999984 4355567788889999999999999887655 344
Q ss_pred EEEEEECC
Q psy3710 209 LIRVFDTG 216 (424)
Q Consensus 209 ~i~iwd~~ 216 (424)
+.+.++.
T Consensus 494 -LlLi~t~ 500 (644)
T KOG2395|consen 494 -LLLIDTL 500 (644)
T ss_pred -EEEEEEe
Confidence 6666653
|
|
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00062 Score=61.48 Aligned_cols=80 Identities=21% Similarity=0.261 Sum_probs=69.1
Q ss_pred CCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeE-EEEEccCCCEEEEEecCCcEEEEEECCCcc
Q psy3710 141 PKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLS-CIALNQTGTRLATASYKGTLIRVFDTGSGQ 219 (424)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~ 219 (424)
+..+..+.|+|.-..+|. +..+|.|.+..++- +.+..+.-|..+++ +++|.|||+.|+.|-.||+ |++.|.+++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~-~t~~gelli~R~n~--qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIAT-RTEKGELLIHRLNW--QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccchhhe-eccCCcEEEEEecc--ceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCCC
Confidence 345677889999999998 99999999999883 66777776777777 9999999999999999999 9999999998
Q ss_pred eeeEE
Q psy3710 220 KLNEL 224 (424)
Q Consensus 220 ~~~~~ 224 (424)
.+..+
T Consensus 96 ~l~~~ 100 (665)
T KOG4640|consen 96 RLVSF 100 (665)
T ss_pred ceecc
Confidence 87764
|
|
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00087 Score=60.59 Aligned_cols=92 Identities=11% Similarity=0.035 Sum_probs=75.3
Q ss_pred CCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCee-eEEEeccCceEEEEeCCcCCCcCCCeEEEEEC
Q psy3710 10 KNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLG-HVEMLFRCNYLALVGGGTHPKYPNNRVMIWDD 87 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~ 87 (424)
.-.|.-+.|+|.-..+|.+..+| +.+..++ .+.+.....|...++ +++|.|||+.+++.- .||+|++.|.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~-------kdG~I~L~Dv 91 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGF-------KDGTIRLHDV 91 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEe-------cCCeEEEEEc
Confidence 44677899999999999999999 8888877 555555555566666 999999999998877 6899999999
Q ss_pred CCCcEEEE--EeecCCeEEEEecC
Q psy3710 88 LKKQVVIC--LEFNAPVKGVRLRR 109 (424)
Q Consensus 88 ~~~~~~~~--~~~~~~v~~~~~~~ 109 (424)
+++..+.. +....+|.++.|.+
T Consensus 92 e~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 92 EKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred cCCCceeccccccccchheeeccc
Confidence 99998887 44577888888864
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.056 Score=44.85 Aligned_cols=157 Identities=8% Similarity=0.052 Sum_probs=104.4
Q ss_pred CCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe--ecCCeEEEEecCCceEEEe---eccEEEEee
Q psy3710 51 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE--FNAPVKGVRLRRDKIVVVL---EGLIKVYTF 125 (424)
Q Consensus 51 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---~~~i~v~~~ 125 (424)
...++.+.|+|+.+.|+++.. ...-.|+=..+|+.++++. .-.....+.+..+++++++ ++.+.++.+
T Consensus 85 ~~nvS~LTynp~~rtLFav~n-------~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTN-------KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTV 157 (316)
T ss_pred cccccceeeCCCcceEEEecC-------CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEE
Confidence 445999999999999999984 3455566567899999887 3456778899999999888 678888887
Q ss_pred cCCCceeE------EEeeCCC-CCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCC--cccccc-------cCCeE
Q psy3710 126 IQCPQQLH------VFETNPN-PKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPP--LDIAAH-------EAPLS 189 (424)
Q Consensus 126 ~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~--~~~~~~-------~~~v~ 189 (424)
......+. .+....+ ..+.-.++|+|..+.+.+ +-+-.-+.||......... .....+ -..|.
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~-aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFV-AKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEE-EEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence 63322211 1222222 455668899999999988 8887888888776432111 111111 23467
Q ss_pred EEEEccC-CCEEEEEecCCcEEEEEECC
Q psy3710 190 CIALNQT-GTRLATASYKGTLIRVFDTG 216 (424)
Q Consensus 190 ~~~~~~~-~~~l~~~~~d~~~i~iwd~~ 216 (424)
++.|++. +..++-+.+++. +.-.|..
T Consensus 237 gl~~~~~~~~LLVLS~ESr~-l~Evd~~ 263 (316)
T COG3204 237 GLEFNAITNSLLVLSDESRR-LLEVDLS 263 (316)
T ss_pred cceecCCCCcEEEEecCCce-EEEEecC
Confidence 7888874 445555555665 6666653
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00031 Score=38.84 Aligned_cols=35 Identities=34% Similarity=0.642 Sum_probs=30.6
Q ss_pred eeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEE
Q psy3710 263 LDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298 (424)
Q Consensus 263 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd 298 (424)
..+..|...|.++.|++++..+++++.|+. +++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence 344578889999999999999999999999 99996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.024 Score=39.74 Aligned_cols=96 Identities=21% Similarity=0.336 Sum_probs=58.9
Q ss_pred eEEEEEcc---CC-CEEEEEecCCcEEEEEECCCcceeeEEecc--eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCC
Q psy3710 188 LSCIALNQ---TG-TRLATASYKGTLIRVFDTGSGQKLNELRRG--LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERP 261 (424)
Q Consensus 188 v~~~~~~~---~~-~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~ 261 (424)
|+++++.. +| +.|+.|+.|.. |++|+-. +.+.++... +..++.... ..+++ +..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y-~l~NGTVGvY~~~~Rl-- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFE-IRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAY-ALANGTVGVYDRSQRL-- 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcE-EEEEeCC--cEEEEEecccceEEEEEcCC-CEEEE-EecCCEEEEEeCccee--
Confidence 56666654 33 58999999999 9999854 556666544 334443333 33444 8999999999875422
Q ss_pred CeeeccCCCCeEEEEEcC-CC---CEEEEEeCCCc
Q psy3710 262 PLDIAAHEAPLSCIALNQ-TG---TRLATASYKGT 292 (424)
Q Consensus 262 ~~~~~~~~~~v~~~~~~~-~~---~~l~~~~~d~~ 292 (424)
-..+ .+..++++++.. ++ .-|++|-.+|.
T Consensus 75 -WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGk 107 (111)
T PF14783_consen 75 -WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGK 107 (111)
T ss_pred -eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCe
Confidence 1111 233466665543 32 25777777765
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00038 Score=38.44 Aligned_cols=36 Identities=33% Similarity=0.603 Sum_probs=31.7
Q ss_pred CcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEE
Q psy3710 178 PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 214 (424)
Q Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd 214 (424)
...+..|...|.++.|.+++..+++++.|+. +++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence 4455678889999999999999999999999 99996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.23 Score=48.32 Aligned_cols=302 Identities=12% Similarity=0.160 Sum_probs=165.3
Q ss_pred CCceEEEEECCCCCeeEeecCCe-E--EEEeCCcCcccccc--cccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEE
Q psy3710 10 KNGLLYAGFNQDQGCFACGMEDG-F--RIYNCDPLKEKERQ--DFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMI 84 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~~~~-i--~iw~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 84 (424)
+..|....|--|..+|.++..+| + .+.|..+++..... .....++.--.|...+..-+++. +|+-..+
T Consensus 583 PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~-------sdrP~vi 655 (1096)
T KOG1897|consen 583 PRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFAL-------SDRPTVI 655 (1096)
T ss_pred chheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEe-------CCCCEEE
Confidence 34566666777788999999999 4 45566666553333 23344555556655554433443 2566666
Q ss_pred EECCCCcEEE-EEeecCCeEEEEec----CCceEEEeeccEEEEeecCCCc-eeEEEeeCCCCCeeEEEeecCCCCeEEE
Q psy3710 85 WDDLKKQVVI-CLEFNAPVKGVRLR----RDKIVVVLEGLIKVYTFIQCPQ-QLHVFETNPNPKGLCVLCPNSNNSLLAF 158 (424)
Q Consensus 85 wd~~~~~~~~-~~~~~~~v~~~~~~----~~~~~~~~~~~i~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (424)
|.. +++.+. .+..+.--....|+ ||....+..+.+++..+++-++ ..+++..+..+ ..+++.+....+++
T Consensus 656 Y~~-n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~p---rrI~~q~~sl~~~v 731 (1096)
T KOG1897|consen 656 YSS-NGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESP---RRICYQESSLTFGV 731 (1096)
T ss_pred Eec-CCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCCCh---hheEecccceEEEE
Confidence 654 333332 22222211222233 4556666688888888763222 12233333333 23344443333332
Q ss_pred ee-------c---cC---CeEEEEeCCCCCCCCccccccc-------CCeEEEEEccC-CCEEEEEe----------cCC
Q psy3710 159 PG-------R---KS---GHVHLVDLADPERPPLDIAAHE-------APLSCIALNQT-GTRLATAS----------YKG 207 (424)
Q Consensus 159 ~~-------~---~d---g~i~i~d~~~~~~~~~~~~~~~-------~~v~~~~~~~~-~~~l~~~~----------~d~ 207 (424)
.+ . .. ..++++|-++. ..+..|+ -.+.+..|..| +.+++.|. ..|
T Consensus 732 ~s~r~e~~~~~~~ee~~~s~l~vlD~nTf----~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~G 807 (1096)
T KOG1897|consen 732 LSNRIESSAEYYGEEYEVSFLRVLDQNTF----EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNG 807 (1096)
T ss_pred EecccccchhhcCCcceEEEEEEecCCce----eEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccc
Confidence 11 1 11 24666666553 2222221 23555568777 56777665 236
Q ss_pred cEEEEEECCCcceeeEE---ecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEE
Q psy3710 208 TLIRVFDTGSGQKLNEL---RRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRL 284 (424)
Q Consensus 208 ~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 284 (424)
. |.++.+.....+... .-.-...++..-+..++ ++-+..|++|+..+.+. .+.-..+..++..+...-.|..+
T Consensus 808 R-Iivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkll--A~In~~vrLye~t~~~e-Lr~e~~~~~~~~aL~l~v~gdeI 883 (1096)
T KOG1897|consen 808 R-IIVFEFEELNSLELVAETVVKGAVYALVEFNGKLL--AGINQSVRLYEWTTERE-LRIECNISNPIIALDLQVKGDEI 883 (1096)
T ss_pred e-EEEEEEecCCceeeeeeeeeccceeehhhhCCeEE--EecCcEEEEEEccccce-ehhhhcccCCeEEEEEEecCcEE
Confidence 6 777777663322222 22223334434444444 45678999999988743 33334788889999999999999
Q ss_pred EEEeCCCcEEEEEECCCCc--eeee---ecc---------CCcEEEEEeCCCcEEEEEccc
Q psy3710 285 ATASYKGTLIRVFDTGSGQ--KLNE---LRR---------DSSYLCVSSDHGTVHVFSVDE 331 (424)
Q Consensus 285 ~~~~~d~~~i~iwd~~~~~--~~~~---~~~---------~~~~l~~~~~d~~i~iw~~~~ 331 (424)
+.|.--+. +.+...+..+ .... +.| +++.++-+..+|.+.+-..++
T Consensus 884 ~VgDlm~S-itll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 884 AVGDLMRS-ITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred EEeeccce-EEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecC
Confidence 99998887 6665544333 2221 122 455666677788888877664
|
|
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00084 Score=52.93 Aligned_cols=134 Identities=12% Similarity=0.055 Sum_probs=76.7
Q ss_pred EEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEE-EE
Q psy3710 199 RLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCI-AL 277 (424)
Q Consensus 199 ~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~-~~ 277 (424)
.+..-+.++. |+-++++..+....-..-+......+....-+++|+.+|.|++|..................|.++ .-
T Consensus 32 ~l~~~sa~~~-v~~~~~~k~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 32 LLRATSADGL-VRERKVRKHKESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred hhccccCCcc-cccchhhhhhhhhhhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 3444566777 777777654332211111111111222223344499999999998874332221121222333332 22
Q ss_pred cCCCCEEEEEeCCCcEEEEEECCCCceeeeec----cCCcEEEEEeCCCcEEEEEcccccc
Q psy3710 278 NQTGTRLATASYKGTLIRVFDTGSGQKLNELR----RDSSYLCVSSDHGTVHVFSVDEAQK 334 (424)
Q Consensus 278 ~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~----~~~~~l~~~~~d~~i~iw~~~~~~~ 334 (424)
-.++.+..+++.|+. ||.|++.-++.+.... .++..+++.+.|+.|.+|++.....
T Consensus 111 ~~~~~~~c~~~~dg~-ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~ 170 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGR-IRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRV 170 (238)
T ss_pred ccccceeEEeccCCc-eeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchh
Confidence 335668899999999 9999999887776543 2345666666777777777666443
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.11 Score=49.44 Aligned_cols=180 Identities=16% Similarity=0.129 Sum_probs=94.1
Q ss_pred CCeEEEEecCCceEEEe---------eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeecc--------
Q psy3710 100 APVKGVRLRRDKIVVVL---------EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRK-------- 162 (424)
Q Consensus 100 ~~v~~~~~~~~~~~~~~---------~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------- 162 (424)
..+.+.+++|++..++. +..-.+|-....+.......+. ......|+|+|+.+.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~----~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH----SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC----CCCCceECCCCCceEEEecCcceEEEec
Confidence 35678899999977664 2223444332122222222221 25567899998877763211
Q ss_pred ---CCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEE---EECCCcceee----EEec----ce
Q psy3710 163 ---SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRV---FDTGSGQKLN----ELRR----GL 228 (424)
Q Consensus 163 ---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~i---wd~~~~~~~~----~~~~----~~ 228 (424)
.+.+.+.+++.+ .... ...+.|..+.|+|||..++... ++. |.+ -....|.... .+.. ..
T Consensus 426 ~~~~gql~~~~vd~g-e~~~---~~~g~Issl~wSpDG~RiA~i~-~g~-v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 426 DPATGQLARTPVDAS-AVAS---RVPGPISELQLSRDGVRAAMII-GGK-VYLAVVEQTEDGQYALTNPREVGPGLGDTA 499 (591)
T ss_pred cCCCceEEEEeccCc-hhhh---ccCCCcCeEEECCCCCEEEEEE-CCE-EEEEEEEeCCCCceeecccEEeecccCCcc
Confidence 233444455432 2211 3356799999999999988766 466 777 4444454111 1211 13
Q ss_pred eeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCC
Q psy3710 229 CVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKG 291 (424)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 291 (424)
..+.|..++..++.+.+.+..++..++.........-.....++..++-+++ .++....++
T Consensus 500 ~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 500 VSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred ccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCc
Confidence 5567777777554333233345555555333211111123556677776653 344445555
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.13 Score=45.58 Aligned_cols=159 Identities=16% Similarity=0.132 Sum_probs=79.1
Q ss_pred CCCCCeeEee--cCC-----eEEEEeCCcCcccccccccC---CCeeeEEEeccCceEEEEeCCcCC-------------
Q psy3710 19 NQDQGCFACG--MED-----GFRIYNCDPLKEKERQDFTD---GGLGHVEMLFRCNYLALVGGGTHP------------- 75 (424)
Q Consensus 19 s~~g~~la~g--~~~-----~i~iw~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~~------------- 75 (424)
-|+|+.++++ ..+ ++.+.|-++.+....-+... .--...-+.|..+.+++...+.-.
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 4788887753 222 28899988776654433321 223446667777888776544210
Q ss_pred CcCCCeEEEEECCCCcEEEEEeec---CCeEEEEecCC--c--eEEEe--eccEEEEeecCCCc--eeEEEeeCCC----
Q psy3710 76 KYPNNRVMIWDDLKKQVVICLEFN---APVKGVRLRRD--K--IVVVL--EGLIKVYTFIQCPQ--QLHVFETNPN---- 140 (424)
Q Consensus 76 ~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~--~--~~~~~--~~~i~v~~~~~~~~--~~~~~~~~~~---- 140 (424)
...-+++.+||+.+.+.++++... ..+..++|..+ . -++.+ .++|..|--...++ ....+.....
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 012479999999999999999954 24567777533 3 22222 55555554321222 1111211110
Q ss_pred -------------CCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCC
Q psy3710 141 -------------PKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERP 177 (424)
Q Consensus 141 -------------~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~ 177 (424)
+.-++.+..|.|.++|.++.-..|.|+.||+.....+
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 2346788899999999998889999999999986443
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.19 Score=45.13 Aligned_cols=87 Identities=10% Similarity=0.083 Sum_probs=52.7
Q ss_pred EEEECCCCCeeEeecCCe-EE---EEeCCc-C--ccccc----cccc---CCCeeeEEEecc---------C-ceEEEEe
Q psy3710 15 YAGFNQDQGCFACGMEDG-FR---IYNCDP-L--KEKER----QDFT---DGGLGHVEMLFR---------C-NYLALVG 70 (424)
Q Consensus 15 ~~~~s~~g~~la~g~~~~-i~---iw~~~~-~--~~~~~----~~~~---~~~i~~~~~~~~---------~-~~l~~~~ 70 (424)
.++.+|+++.||.+..+. +. -|+.+. + ..... .... ...|+++.+.|= . ...+.+|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 467899999999998887 22 354311 1 11111 1111 257888877653 1 2334444
Q ss_pred CCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEec
Q psy3710 71 GGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLR 108 (424)
Q Consensus 71 ~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~ 108 (424)
- .+|.|++|.. +|..+..-. |.++|..+.+.
T Consensus 86 ~------ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 T------SSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred e------cccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 3 4799999985 666555433 78888888874
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0031 Score=36.62 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=30.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCcee
Q psy3710 268 HEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL 305 (424)
Q Consensus 268 ~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~ 305 (424)
....|..++|+|...+||.++.+|. |.++.+ +++.+
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl-~~qri 45 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGE-VLVYRL-NWQRI 45 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCe-EEEEEC-CCcCc
Confidence 3457999999999999999999999 999998 55543
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0031 Score=36.63 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=29.7
Q ss_pred cccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCc
Q psy3710 7 STYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLK 42 (424)
Q Consensus 7 ~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~ 42 (424)
+.....|.+++|+|...+||.|+.+| |.+|.+ +++
T Consensus 8 k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 8 KNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 34456899999999999999999999 999998 443
|
|
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0013 Score=51.95 Aligned_cols=96 Identities=11% Similarity=0.123 Sum_probs=56.1
Q ss_pred eccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCccee-eEEecc-eeeeeecCCC
Q psy3710 160 GRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL-NELRRG-LCVLCPNSNN 237 (424)
Q Consensus 160 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~-~~~~~~-~~~~~~~~~~ 237 (424)
-+.+|.|+-++++..+...+.-.-|..- .....-+..++.|+.+|. |.+|.....-.. ..+... -...+.-|.+
T Consensus 36 ~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~-v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~ 111 (238)
T KOG2444|consen 36 TSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGA-VYVFNWNLEGAHSDRVCSGEESIDLGIPNG 111 (238)
T ss_pred ccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccce-EEEecCCccchHHHhhhcccccceeccccc
Confidence 5777888888776542222222222222 111223567999999999 999988622111 111111 1223444544
Q ss_pred Ce--EEEEeecCCeEEEEeCCCCC
Q psy3710 238 SL--LAFPGRKSGHVHLVDLADPE 259 (424)
Q Consensus 238 ~~--~~~~~~~dg~i~i~d~~~~~ 259 (424)
.. +.+++..+|.|+.|+..-.+
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~p~k 135 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIKPNK 135 (238)
T ss_pred cccceeEEeccCCceeeeccccCc
Confidence 44 78889999999999987655
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.39 Score=45.66 Aligned_cols=220 Identities=17% Similarity=0.140 Sum_probs=109.6
Q ss_pred CceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe--ecCCeEEEEecCCceEEEe--e------ccEEEEeecCCCcee
Q psy3710 63 CNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE--FNAPVKGVRLRRDKIVVVL--E------GLIKVYTFIQCPQQL 132 (424)
Q Consensus 63 ~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~--~------~~i~v~~~~~~~~~~ 132 (424)
...+++++|.......-..+..+|..+++...... .+..-.++++..+..+++. + ..+..||.. ..+..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~-~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPR-TNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCC-CCcee
Confidence 45566666543111223688899988875544333 3444566777777666664 4 356777775 33322
Q ss_pred E--EEeeCCCCCeeEEEeecCCCCeEEEeeccCCe-----EEEEeCCCCCCCCcccccccCCeEEEEE-ccCCCEEEEEe
Q psy3710 133 H--VFETNPNPKGLCVLCPNSNNSLLAFPGRKSGH-----VHLVDLADPERPPLDIAAHEAPLSCIAL-NQTGTRLATAS 204 (424)
Q Consensus 133 ~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~ 204 (424)
. .+.......++..+ +|...++ |+.||. +..||..+.+ - ............... .-+|...++|+
T Consensus 363 ~~a~M~~~R~~~~v~~l----~g~iYav-GG~dg~~~l~svE~YDp~~~~-W-~~va~m~~~r~~~gv~~~~g~iYi~GG 435 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVL----DGKLYAV-GGFDGEKSLNSVECYDPVTNK-W-TPVAPMLTRRSGHGVAVLGGKLYIIGG 435 (571)
T ss_pred ccCCccCccccceeEEE----CCEEEEE-eccccccccccEEEecCCCCc-c-cccCCCCcceeeeEEEEECCEEEEEcC
Confidence 2 11111111222222 4666666 888864 6778877642 1 111111112222222 22567777777
Q ss_pred cCCc-----EEEEEECCCcceee--EEecceeeeeecCCCCeEEEEeecCC-----eEEEEeCCCCCCCCe-eeccCCCC
Q psy3710 205 YKGT-----LIRVFDTGSGQKLN--ELRRGLCVLCPNSNNSLLAFPGRKSG-----HVHLVDLADPERPPL-DIAAHEAP 271 (424)
Q Consensus 205 ~d~~-----~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~dg-----~i~i~d~~~~~~~~~-~~~~~~~~ 271 (424)
.++. .+..||..+++-.. .+...-.......-+..+.+.|+.++ ++..||..+.+-... .+......
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA 515 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence 5543 16778877664322 22222122223333455555577665 377788877653221 12122222
Q ss_pred eEEEEEcCCCCEEEEEeCCCc
Q psy3710 272 LSCIALNQTGTRLATASYKGT 292 (424)
Q Consensus 272 v~~~~~~~~~~~l~~~~~d~~ 292 (424)
+-...+ +++..+.|+.|+.
T Consensus 516 ~g~~~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 516 VGVVVL--GGKLYAVGGFDGN 534 (571)
T ss_pred ccEEEE--CCEEEEEecccCc
Confidence 222222 5567777777764
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.26 Score=41.41 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=62.0
Q ss_pred CeEEEEEccCCCEEEEEe--cCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEE-eCCCCCCCCe
Q psy3710 187 PLSCIALNQTGTRLATAS--YKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLV-DLADPERPPL 263 (424)
Q Consensus 187 ~v~~~~~~~~~~~l~~~~--~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~-d~~~~~~~~~ 263 (424)
.+.+.+++++++.++... .++..++++..............+..-.|++++....+ ...+...+++ +...+.....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v-~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTV-DDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEE-EcCCCceEEEEecCCCcceeE
Confidence 688999999999887766 44443555554332222212224566788888555554 4455555555 3333332222
Q ss_pred eeccC--CCCeEEEEEcCCCCEEEEEeCCC
Q psy3710 264 DIAAH--EAPLSCIALNQTGTRLATASYKG 291 (424)
Q Consensus 264 ~~~~~--~~~v~~~~~~~~~~~l~~~~~d~ 291 (424)
.+... ...|+.+.+||||..+|....++
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~ 133 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDG 133 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecC
Confidence 22211 22899999999999988776443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0051 Score=59.46 Aligned_cols=73 Identities=23% Similarity=0.357 Sum_probs=58.3
Q ss_pred CCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEec
Q psy3710 152 NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR 226 (424)
Q Consensus 152 ~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~ 226 (424)
.+..+++ |+..|.+...|+...-.+...-..-.++|++++|+.+|+.++.|-.+|. |.+||+..++.++.+..
T Consensus 98 ~~~~ivi-~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~k~l~~i~e 170 (1206)
T KOG2079|consen 98 VVVPIVI-GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRAKILKVITE 170 (1206)
T ss_pred eeeeEEE-EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCCcceeeeee
Confidence 3556777 8999999999988642232333344689999999999999999999999 99999999888877763
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.48 Score=46.51 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=43.2
Q ss_pred CCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCe-------------EEEEEcc--CCCEEEEEec----------CC
Q psy3710 153 NSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPL-------------SCIALNQ--TGTRLATASY----------KG 207 (424)
Q Consensus 153 ~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------d~ 207 (424)
+..+++ ++.|+.+.-.|.+++ +....+. .++.| ..+.-.| .+..++.++. +|
T Consensus 260 ~~rV~~-~T~Dg~LiALDA~TG-k~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G 336 (764)
T TIGR03074 260 ARRIIL-PTSDARLIALDADTG-KLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSG 336 (764)
T ss_pred CCEEEE-ecCCCeEEEEECCCC-CEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCc
Confidence 446666 888999999999887 4443332 11111 0111112 1345666643 57
Q ss_pred cEEEEEECCCcceeeEEec
Q psy3710 208 TLIRVFDTGSGQKLNELRR 226 (424)
Q Consensus 208 ~~i~iwd~~~~~~~~~~~~ 226 (424)
. |+-+|.++|+.+-.+..
T Consensus 337 ~-I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 337 V-IRAFDVNTGALVWAWDP 354 (764)
T ss_pred E-EEEEECCCCcEeeEEec
Confidence 7 99999999999888764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.38 Score=45.49 Aligned_cols=220 Identities=15% Similarity=0.152 Sum_probs=117.0
Q ss_pred CeEEEEecCCceEEE--eeccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCC
Q psy3710 101 PVKGVRLRRDKIVVV--LEGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPP 178 (424)
Q Consensus 101 ~v~~~~~~~~~~~~~--~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~ 178 (424)
.+-++..+|....-. ..-.|+||++ .++.+..+.-... .+..+.|+.+..+|++ ..+|.+.+|++-......
T Consensus 45 GpIAV~r~p~~~~~~~~a~~~I~If~~--sG~lL~~~~w~~~--~lI~mgWs~~eeLI~v--~k~g~v~Vy~~~ge~ie~ 118 (829)
T KOG2280|consen 45 GPIAVTRSPSKLVPLYSARPYIRIFNI--SGQLLGRILWKHG--ELIGMGWSDDEELICV--QKDGTVHVYGLLGEFIES 118 (829)
T ss_pred CceEEEecccccccccccceeEEEEec--cccchHHHHhcCC--CeeeecccCCceEEEE--eccceEEEeecchhhhcc
Confidence 344455555332211 1446888887 4666655443332 4778999988887775 899999999987532111
Q ss_pred c--ccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEec-c---e--eeee-ecCCCC-eEEEEeecCC
Q psy3710 179 L--DIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR-G---L--CVLC-PNSNNS-LLAFPGRKSG 248 (424)
Q Consensus 179 ~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-~---~--~~~~-~~~~~~-~~~~~~~~dg 248 (424)
. -.......|....+..+|-.+++ .+|..+.+-+.... ...+++. + . .+.. +.|... .++..-...-
T Consensus 119 ~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v 195 (829)
T KOG2280|consen 119 NSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAV 195 (829)
T ss_pred cccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhh
Confidence 1 11233445666666666644433 34541333333322 2222221 1 1 1111 112111 1111000000
Q ss_pred eEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeecc----CCcEEEEEeCCCcE
Q psy3710 249 HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR----DSSYLCVSSDHGTV 324 (424)
Q Consensus 249 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~----~~~~l~~~~~d~~i 324 (424)
-..++-..........+....+.+..+..||+.++|+-=...|. |.+-+.+..+++.+++- -.+.++=++.|..+
T Consensus 196 ~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~-i~~vs~D~~~~lce~~~~~~~~p~qm~WcgndaVv 274 (829)
T KOG2280|consen 196 GLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGK-IWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDAVV 274 (829)
T ss_pred hhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCc-EEEEecchhhhhhccCCCCCCchHhceeecCCceE
Confidence 01111122211111222222456788999999999999999999 99999988888877761 12356667777777
Q ss_pred EEEEcc
Q psy3710 325 HVFSVD 330 (424)
Q Consensus 325 ~iw~~~ 330 (424)
..|+..
T Consensus 275 l~~e~~ 280 (829)
T KOG2280|consen 275 LSWEVN 280 (829)
T ss_pred EEEeee
Confidence 777643
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.22 Score=47.33 Aligned_cols=91 Identities=7% Similarity=0.081 Sum_probs=41.7
Q ss_pred CeEEEEECCCCcEEEEEeecCC--eEEEEecCCceEEEe--e------ccEEEEeecCCCceeEEEeeCCCCCeeEEEee
Q psy3710 80 NRVMIWDDLKKQVVICLEFNAP--VKGVRLRRDKIVVVL--E------GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCP 149 (424)
Q Consensus 80 ~~i~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~--~------~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (424)
..+..||..+++....-..+.+ -.+++...+..+++. + ..+..||.. ... ...+..-..+..-.+++
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~-~n~-W~~~~~m~~~R~~~~~~- 348 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIE-NKI-HVELPPMIKNRCRFSLA- 348 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECC-CCe-EeeCCCCcchhhceeEE-
Confidence 3577888877654332121111 123444444444443 1 236677764 222 12221111111111111
Q ss_pred cCCCCeEEEeeccCC-----eEEEEeCCCC
Q psy3710 150 NSNNSLLAFPGRKSG-----HVHLVDLADP 174 (424)
Q Consensus 150 ~~~~~~l~~~~~~dg-----~i~i~d~~~~ 174 (424)
.-+++..++ |+.++ .+..||..+.
T Consensus 349 ~~~g~IYvi-GG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 349 VIDDTIYAI-GGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred EECCEEEEE-CCcCCCCCCceEEEEECCCC
Confidence 225666666 77654 4788998764
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.44 Score=41.28 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=45.9
Q ss_pred CCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECC
Q psy3710 21 DQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL 88 (424)
Q Consensus 21 ~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~ 88 (424)
++++|+.|+++|+.+.+..........-.+...|..+...+..+.+++.++. ...++.+++.
T Consensus 12 ~~~~lL~GTe~Gly~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk------~~~L~~~~L~ 73 (302)
T smart00036 12 DGKWLLVGTEEGLYVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGK------KPQLYSHPLS 73 (302)
T ss_pred CCcEEEEEeCCceEEEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCC------cceEEEEEHH
Confidence 4468999999998888865432222234456789999999999999999853 3459999873
|
Unpublished observations. |
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.31 Score=39.12 Aligned_cols=137 Identities=12% Similarity=0.087 Sum_probs=82.3
Q ss_pred cCCeEEEEecCCceEEEe------------eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeE
Q psy3710 99 NAPVKGVRLRRDKIVVVL------------EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHV 166 (424)
Q Consensus 99 ~~~v~~~~~~~~~~~~~~------------~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i 166 (424)
+...+.-..+|+|++.+. .|.++.|-.. . .+..+...- .-...++|+.+.+.+...-+.+-.|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h-~v~~i~~~v--~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--H-QVELIWNCV--GISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--C-Cceeeehhc--cCCccccccccCcEEEEEccCceEE
Confidence 345667778899988763 3455555543 1 111121111 1123678888888877767888888
Q ss_pred EEEe--CCCCC----CCCccccc----ccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeee
Q psy3710 167 HLVD--LADPE----RPPLDIAA----HEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCP 233 (424)
Q Consensus 167 ~i~d--~~~~~----~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~ 233 (424)
.-|| ..++. +.+..++. ..-.--.++...+|++.++.-..++ |...|..+|+.+.+++.+ +.+.||
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~-V~~~dp~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT-VQKVDPTTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcE-EEEECCCCCcEEEEEEcCCCceEEEEe
Confidence 7787 44431 11111111 1112234555667888888877888 999999999999998865 556666
Q ss_pred cCCCCeEE
Q psy3710 234 NSNNSLLA 241 (424)
Q Consensus 234 ~~~~~~~~ 241 (424)
-..+-.++
T Consensus 262 gGkn~d~~ 269 (310)
T KOG4499|consen 262 GGKNLDIL 269 (310)
T ss_pred cCCCccEE
Confidence 54433333
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.33 Score=38.99 Aligned_cols=195 Identities=15% Similarity=0.148 Sum_probs=102.3
Q ss_pred eccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCC---CEEEEEecCCcEEEEEECC--CcceeeEE---ec-----
Q psy3710 160 GRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTG---TRLATASYKGTLIRVFDTG--SGQKLNEL---RR----- 226 (424)
Q Consensus 160 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~~i~iwd~~--~~~~~~~~---~~----- 226 (424)
--..|.|.-||....+.....+.+ .+..++.+--.+ .+.+.++..-. |.-||.. ......++ ..
T Consensus 33 Di~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~-i~nwd~~~~~a~v~~t~~ev~~d~kkn 109 (310)
T KOG4499|consen 33 DIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFV-IVNWDGVSESAKVYRTLFEVQPDRKKN 109 (310)
T ss_pred EeccCceehhhhhhhheEEEEEec--CcceeEEEEecCCCceEEEeecceEE-EEEcccccceeeeeeeccccCchHHhc
Confidence 556677777888764222223322 223333332222 23333333333 6667733 22333332 11
Q ss_pred ceeeeeecCCCCeEEEEeec--------CCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEE
Q psy3710 227 GLCVLCPNSNNSLLAFPGRK--------SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATA-SYKGTLIRVF 297 (424)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~--------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~~i~iw 297 (424)
...--..+|+|+++.-+-.+ .|.++.|-..-. +..+...-.--+.++|+.+.+.+... +.+-. |.-|
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~-V~a~ 185 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ---VELIWNCVGISNGLAWDSDAKKFYYIDSLNYE-VDAY 185 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccCCC---ceeeehhccCCccccccccCcEEEEEccCceE-Eeee
Confidence 13334567888874432222 234444443221 11111223344678998877766554 44555 7777
Q ss_pred E--CCCCceee--------------eecc-------CCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCC
Q psy3710 298 D--TGSGQKLN--------------ELRR-------DSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSS 354 (424)
Q Consensus 298 d--~~~~~~~~--------------~~~~-------~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (424)
| ..+|.... ...| +|.+.++.-..++|...|..+|+.+.
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~------------------ 247 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILL------------------ 247 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEE------------------
Confidence 7 55554332 1223 45667777778888888888887653
Q ss_pred ceeeEEeecCCCceEEEEe-cCCCeEEEEe
Q psy3710 355 WSFCKFQIPSDPPCICAFG-ADSNSIIVIC 383 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~s-~~~~~l~~~~ 383 (424)
++..+...+++|||- ++-..|++.+
T Consensus 248 ----eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 248 ----EIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred ----EEEcCCCceEEEEecCCCccEEEEEe
Confidence 366677789999996 4444555443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.44 Score=45.36 Aligned_cols=219 Identities=12% Similarity=0.076 Sum_probs=99.0
Q ss_pred EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe--ecCCeEEEEecCC
Q psy3710 33 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE--FNAPVKGVRLRRD 110 (424)
Q Consensus 33 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~ 110 (424)
+..||..+.+.......+.......... -++.+.++||.......-..+..||..++.-...-. ....-.+++...+
T Consensus 274 v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g 352 (557)
T PHA02713 274 ILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDD 352 (557)
T ss_pred EEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECC
Confidence 6778877665432222222211111122 245566666531111112568888987765322111 1111223333444
Q ss_pred ceEEEe--e-----ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccC--------------------
Q psy3710 111 KIVVVL--E-----GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKS-------------------- 163 (424)
Q Consensus 111 ~~~~~~--~-----~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d-------------------- 163 (424)
..++.. + ..+..||.. +.. ...+..-..+....+.+ .-+++..++ |+.+
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~-~~~-W~~~~~mp~~r~~~~~~-~~~g~IYvi-GG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMG-DDK-WKMLPDMPIALSSYGMC-VLDQYIYII-GGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECC-CCe-EEECCCCCcccccccEE-EECCEEEEE-eCCCcccccccccccccccccccc
Confidence 444443 2 247788875 222 22221111111111111 124666665 7654
Q ss_pred ---CeEEEEeCCCCCC-CCcccccccCCeEEEEEccCCCEEEEEecC------CcEEEEEECCC-cc--eeeEEecceee
Q psy3710 164 ---GHVHLVDLADPER-PPLDIAAHEAPLSCIALNQTGTRLATASYK------GTLIRVFDTGS-GQ--KLNELRRGLCV 230 (424)
Q Consensus 164 ---g~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~~i~iwd~~~-~~--~~~~~~~~~~~ 230 (424)
..+..||..+..- .+..+...... .+++ .-+++..+.|+.+ .. +..||.++ .+ .+..++.+...
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~-~~~~~IYv~GG~~~~~~~~~~-ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVV-SHKDDIYVVCDIKDEKNVKTC-IFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCccccc-CcEE-EECCEEEEEeCCCCCCcccee-EEEecCCCCCCeeEccccCccccc
Confidence 2477788776411 01111111111 1122 2245666666654 23 67899886 33 33333333222
Q ss_pred eeecCCCCeEEEEeecCC--eEEEEeCCCCC
Q psy3710 231 LCPNSNNSLLAFPGRKSG--HVHLVDLADPE 259 (424)
Q Consensus 231 ~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~ 259 (424)
....--++.+.+.|+.++ .+..||..+.+
T Consensus 506 ~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 506 LHTILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ceeEEECCEEEEEeeecceeehhhcCccccc
Confidence 222223556666688887 78888888765
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.36 E-value=1 Score=44.33 Aligned_cols=108 Identities=13% Similarity=0.150 Sum_probs=66.2
Q ss_pred CCEEEEEecCCcEEEEEECCCcceeeEEecceee-----------eeec----------------CCCCeEEEEeecCCe
Q psy3710 197 GTRLATASYKGTLIRVFDTGSGQKLNELRRGLCV-----------LCPN----------------SNNSLLAFPGRKSGH 249 (424)
Q Consensus 197 ~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~-----------~~~~----------------~~~~~~~~~~~~dg~ 249 (424)
+..++.++.++. |.-.|..+|+.+-++...... +++. ..+..++ .++.|+.
T Consensus 194 gg~lYv~t~~~~-V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~-~~T~Dg~ 271 (764)
T TIGR03074 194 GDTLYLCTPHNK-VIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRII-LPTSDAR 271 (764)
T ss_pred CCEEEEECCCCe-EEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEE-EecCCCe
Confidence 456777777888 888999888888776533110 1111 1222444 4888999
Q ss_pred EEEEeCCCCCCCCeeeccCCCCe-------------EEEEEcC--CCCEEEEEeC----------CCcEEEEEECCCCce
Q psy3710 250 VHLVDLADPERPPLDIAAHEAPL-------------SCIALNQ--TGTRLATASY----------KGTLIRVFDTGSGQK 304 (424)
Q Consensus 250 i~i~d~~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------d~~~i~iwd~~~~~~ 304 (424)
+.-.|.++++.... + +..+.| ..+.-.| .+..++.++. +|. |+-+|.++|+.
T Consensus 272 LiALDA~TGk~~W~-f-g~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~-I~A~Da~TGkl 348 (764)
T TIGR03074 272 LIALDADTGKLCED-F-GNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV-IRAFDVNTGAL 348 (764)
T ss_pred EEEEECCCCCEEEE-e-cCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE-EEEEECCCCcE
Confidence 99999999874322 1 111111 1111122 1335555542 577 99999999999
Q ss_pred eeeec
Q psy3710 305 LNELR 309 (424)
Q Consensus 305 ~~~~~ 309 (424)
+..+.
T Consensus 349 ~W~~~ 353 (764)
T TIGR03074 349 VWAWD 353 (764)
T ss_pred eeEEe
Confidence 99875
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=96.34 E-value=1.1 Score=43.83 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=23.4
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEEECC
Q psy3710 186 APLSCIALNQTGTRLATASYKGTLIRVFDTG 216 (424)
Q Consensus 186 ~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 216 (424)
-.|..+.++|+|++++..|..+ |.|..+.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~--v~V~~LP 113 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG--VVVLELP 113 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc--EEEEEec
Confidence 3688999999999999988877 6666663
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=1.3 Score=43.50 Aligned_cols=240 Identities=11% Similarity=-0.007 Sum_probs=121.1
Q ss_pred CceEEEEECCCCCeeEeecCCe------EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEE
Q psy3710 11 NGLLYAGFNQDQGCFACGMEDG------FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMI 84 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la~g~~~~------i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 84 (424)
-.+..+.+||||++||.+.+.+ |++.|+.++..+.... .+.-..++|.++++.++........ .....|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~~~~~~~w~~D~~~~~y~~~~~~~-~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DNVEPSFVWANDSWTFYYVRKHPVT-LLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cCcceEEEEeeCCCEEEEEEecCCC-CCCCEEEE
Confidence 3466788999999999653332 8888888776432111 1111458999999988877643110 02368889
Q ss_pred EECCCC--cEEEEEee-cCCeE-EEEecCCceEEEe------eccEEEEeecC-CCceeEEEeeCCCCCeeEEEeecCCC
Q psy3710 85 WDDLKK--QVVICLEF-NAPVK-GVRLRRDKIVVVL------EGLIKVYTFIQ-CPQQLHVFETNPNPKGLCVLCPNSNN 153 (424)
Q Consensus 85 wd~~~~--~~~~~~~~-~~~v~-~~~~~~~~~~~~~------~~~i~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (424)
+++.++ +-...+.. ..... ....+.++.++.. ++.+.+++... .......+ ........ .+. +..+
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~-~~~-~~~~ 280 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL-PRRKDHEY-SLD-HYQH 280 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE-ECCCCCEE-EEE-eCCC
Confidence 999888 33333432 22222 3333445544332 56788888532 22222222 22222222 222 2233
Q ss_pred CeEEEeec--cCCeEEEEeCCCCCCCCcccccc-c-CCeEEEEEccCCCEEEEEecCCc-EEEEEECCCcceeeEEe--c
Q psy3710 154 SLLAFPGR--KSGHVHLVDLADPERPPLDIAAH-E-APLSCIALNQTGTRLATASYKGT-LIRVFDTGSGQKLNELR--R 226 (424)
Q Consensus 154 ~~l~~~~~--~dg~i~i~d~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~l~~~~~d~~-~i~iwd~~~~~~~~~~~--~ 226 (424)
.+++.+-. ....|...++... .....+..+ . ..+..+.+.. +..+++...++. .+.+++..++ .+..+. .
T Consensus 281 ~ly~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~ 357 (686)
T PRK10115 281 RFYLRSNRHGKNFGLYRTRVRDE-QQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR-EVIGIAFDD 357 (686)
T ss_pred EEEEEEcCCCCCceEEEecCCCc-ccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCC
Confidence 44443221 2234444455422 222334444 2 3677888873 345555555665 1344454333 333333 1
Q ss_pred c--eeeeeec--CCCCeEEEEee---cCCeEEEEeCCCCC
Q psy3710 227 G--LCVLCPN--SNNSLLAFPGR---KSGHVHLVDLADPE 259 (424)
Q Consensus 227 ~--~~~~~~~--~~~~~~~~~~~---~dg~i~i~d~~~~~ 259 (424)
+ ...+..+ +++..++++.+ .-+.++.+|+.+++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 358 PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 2 2222233 44455554333 35788889987754
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.55 Score=39.04 Aligned_cols=180 Identities=12% Similarity=0.043 Sum_probs=98.5
Q ss_pred EEEEECCCCCeeEeecCCe---EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCC
Q psy3710 14 LYAGFNQDQGCFACGMEDG---FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKK 90 (424)
Q Consensus 14 ~~~~~s~~g~~la~g~~~~---i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~ 90 (424)
..+.|..+|.++-+.+.-| |+.+|+++++.......+. ....=-+..-++.+.-... .++...+||.++-
T Consensus 48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~~d~l~qLTW------k~~~~f~yd~~tl 120 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITILGDKLYQLTW------KEGTGFVYDPNTL 120 (264)
T ss_dssp EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEETTEEEEEES------SSSEEEEEETTTT
T ss_pred ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEECCEEEEEEe------cCCeEEEEccccc
Confidence 3466766776666544433 9999999988765544422 2222112222455555553 4799999999999
Q ss_pred cEEEEEeecCCeEEEEecCCceEEEeec--cEEEEeecCCCceeEEEeeCCCCCe---eEEEeecCCCCeEEEeeccCCe
Q psy3710 91 QVVICLEFNAPVKGVRLRRDKIVVVLEG--LIKVYTFIQCPQQLHVFETNPNPKG---LCVLCPNSNNSLLAFPGRKSGH 165 (424)
Q Consensus 91 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~i~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~dg~ 165 (424)
+.+.++..++.=+.++.. +..++.+|| .++.+|.. +.+....+........ +..+.+- +|...|- --....
T Consensus 121 ~~~~~~~y~~EGWGLt~d-g~~Li~SDGS~~L~~~dP~-~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyAN-VW~td~ 196 (264)
T PF05096_consen 121 KKIGTFPYPGEGWGLTSD-GKRLIMSDGSSRLYFLDPE-TFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYAN-VWQTDR 196 (264)
T ss_dssp EEEEEEE-SSS--EEEEC-SSCEEEE-SSSEEEEE-TT-T-SEEEEEE-EETTEE---EEEEEEE-TTEEEEE-ETTSSE
T ss_pred eEEEEEecCCcceEEEcC-CCEEEEECCccceEEECCc-ccceEEEEEEEECCEECCCcEeEEEE-cCEEEEE-eCCCCe
Confidence 999999988888888843 345666655 56667754 5555555544332221 2233332 4444443 444556
Q ss_pred EEEEeCCCCCCCCcccc---------------cccCCeEEEEEccCCCEEEEEec
Q psy3710 166 VHLVDLADPERPPLDIA---------------AHEAPLSCIALNQTGTRLATASY 205 (424)
Q Consensus 166 i~i~d~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~ 205 (424)
|...|..++ .....+. ...+-.+.||+.|..+.|...+.
T Consensus 197 I~~Idp~tG-~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 197 IVRIDPETG-KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEEeCCCC-eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 666666665 2221110 11345789999987766655443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.43 Score=45.38 Aligned_cols=174 Identities=16% Similarity=0.135 Sum_probs=92.6
Q ss_pred CCeEEEeeccC------CeEEEEeCCCCCC-CCcccccccCCeEEEEEccCCCEEEEEecC-Cc----EEEEEECCCcce
Q psy3710 153 NSLLAFPGRKS------GHVHLVDLADPER-PPLDIAAHEAPLSCIALNQTGTRLATASYK-GT----LIRVFDTGSGQK 220 (424)
Q Consensus 153 ~~~l~~~~~~d------g~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~----~i~iwd~~~~~~ 220 (424)
+..+++ |+.+ ..+..||..++.- ....+. +...-.+++.. ++...++|+.| +. .+..||.++++-
T Consensus 285 ~~l~~v-GG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 285 GKLVAV-GGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CeEEEE-CCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 444555 7766 4677888876511 111121 22223444444 45778888888 22 277888877652
Q ss_pred ee--EEecceeeeeecCCCCeEEEEeecCC-----eEEEEeCCCCCCCCeeeccCCCCeEEEEE-cCCCCEEEEEeCCCc
Q psy3710 221 LN--ELRRGLCVLCPNSNNSLLAFPGRKSG-----HVHLVDLADPERPPLDIAAHEAPLSCIAL-NQTGTRLATASYKGT 292 (424)
Q Consensus 221 ~~--~~~~~~~~~~~~~~~~~~~~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~ 292 (424)
.. .+...-.......-++.+.+.|+.|| ++..||..+.+-... ..........+. .-+|+..++|+.++.
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v--a~m~~~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV--APMLTRRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc--CCCCcceeeeEEEEECCEEEEEcCcCCC
Confidence 22 12222223334444556666688776 577888887652211 112122222222 236778888886653
Q ss_pred E-----EEEEECCCCceeee--e----------ccCCcEEEEEeCCCc-----EEEEEccc
Q psy3710 293 L-----IRVFDTGSGQKLNE--L----------RRDSSYLCVSSDHGT-----VHVFSVDE 331 (424)
Q Consensus 293 ~-----i~iwd~~~~~~~~~--~----------~~~~~~l~~~~~d~~-----i~iw~~~~ 331 (424)
. +..||..+++.... . .-++.+.+.|+.|+. +..||..+
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCC
Confidence 1 77888877653321 1 125666777776652 44455444
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.14 E-value=1.1 Score=41.38 Aligned_cols=154 Identities=12% Similarity=0.078 Sum_probs=83.5
Q ss_pred CCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCc-----eEEEe--eccEEEEe
Q psy3710 52 GGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDK-----IVVVL--EGLIKVYT 124 (424)
Q Consensus 52 ~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~--~~~i~v~~ 124 (424)
.++..++|. ||+.++...-.. ..|.+++=| .+.+..|+ -|..+.|.|-+ .++|. ...|.||.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l----~~gE~kfGd---s~viGqFE---hV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQL----HNGEPKFGD---SKVIGQFE---HVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred ccccceEec-CCCEEEEEeeee----eCCccccCC---ccEeeccc---eeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence 456677775 555544433110 122222221 22333443 47888898753 45565 78999999
Q ss_pred ecCC----CceeEEEeeC---CCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCC
Q psy3710 125 FIQC----PQQLHVFETN---PNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTG 197 (424)
Q Consensus 125 ~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 197 (424)
+... .+.+.....+ .-+.---...|+|....|++ =.....-.++++......++.-....+.|.|.+|.+||
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~V-LT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTV-LTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG 167 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEE-EecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcC
Confidence 8522 2222221111 11111123468998888877 33333334455554333333222456889999999999
Q ss_pred CEEEEEecCCcEEEEEECCC
Q psy3710 198 TRLATASYKGTLIRVFDTGS 217 (424)
Q Consensus 198 ~~l~~~~~d~~~i~iwd~~~ 217 (424)
+.|+.+-...-.-++||-..
T Consensus 168 ~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CEEEEEeCCeEEEEEecCch
Confidence 98877654433368888643
|
|
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.011 Score=56.27 Aligned_cols=193 Identities=16% Similarity=0.185 Sum_probs=98.0
Q ss_pred ecCCeEEEEec----CCceEEEeeccEEEEeecC-CCceeEEEeeC-----CCCCeeEEEe-ecCCCCeEEEeeccCCeE
Q psy3710 98 FNAPVKGVRLR----RDKIVVVLEGLIKVYTFIQ-CPQQLHVFETN-----PNPKGLCVLC-PNSNNSLLAFPGRKSGHV 166 (424)
Q Consensus 98 ~~~~v~~~~~~----~~~~~~~~~~~i~v~~~~~-~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~l~~~~~~dg~i 166 (424)
+++.+-.+.|. |.+.. .-|.+.||+++. .++....+..+ .........+ +-++..++.+ +-.++.+
T Consensus 131 f~G~v~dl~fah~~~pk~~~--~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~-~~~~~~i 207 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGRR--LVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICY-GLKGGEI 207 (1283)
T ss_pred CCCCcccccccccCChHHHH--HhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeee-ccCCCce
Confidence 56677777773 22221 136778888752 22222222111 1111111111 2334456666 8889999
Q ss_pred EEEeCCCCCCCCcccccccCCeEEEEE-----------ccCCCEEEEEecCCcEEEEEECC-CcceeeEEecceeeeeec
Q psy3710 167 HLVDLADPERPPLDIAAHEAPLSCIAL-----------NQTGTRLATASYKGTLIRVFDTG-SGQKLNELRRGLCVLCPN 234 (424)
Q Consensus 167 ~i~d~~~~~~~~~~~~~~~~~v~~~~~-----------~~~~~~l~~~~~d~~~i~iwd~~-~~~~~~~~~~~~~~~~~~ 234 (424)
++...+.. ....+.+|...+..++| +|||..++.++.||. ++.|.+- +++..
T Consensus 208 ~lL~~~ra--~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiyi~g~~~------------- 271 (1283)
T KOG1916|consen 208 RLLNINRA--LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIYITGKIV------------- 271 (1283)
T ss_pred eEeeechH--HHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeeeeecccc-------------
Confidence 99888763 44666778777666554 677777777777777 7766542 11110
Q ss_pred CCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeeccCCcE
Q psy3710 235 SNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSY 314 (424)
Q Consensus 235 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~ 314 (424)
-..++.|...++......+ .|+..+..+.... -.++++++.-++.+++|.....+|+..+.+|+-.
T Consensus 272 ------------~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~-w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~ 337 (1283)
T KOG1916|consen 272 ------------HRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGK-WVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQ 337 (1283)
T ss_pred ------------HhhhhccCCCCCCCceeee-eccccccCCccce-eEEEEecccCCcceeEeeccchhhhhhhcccceE
Confidence 0111222222211111111 2222222111111 1245555554444999999999998777766655
Q ss_pred EEEEeCCCcE
Q psy3710 315 LCVSSDHGTV 324 (424)
Q Consensus 315 l~~~~~d~~i 324 (424)
++. -.||.+
T Consensus 338 iV~-p~~~~v 346 (1283)
T KOG1916|consen 338 IVG-PHDGEV 346 (1283)
T ss_pred eec-CCCccc
Confidence 544 334433
|
|
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.021 Score=55.50 Aligned_cols=87 Identities=24% Similarity=0.363 Sum_probs=63.3
Q ss_pred EEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec-----------
Q psy3710 241 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR----------- 309 (424)
Q Consensus 241 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~----------- 309 (424)
++.|++.|.+-..|+...-.+...-..-.++|++++|+.+|+.++.|-.+|. |.+||...++.++.+.
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred EEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCCcceeeeeecCCccceEEE
Confidence 3348888888888887643322222244679999999999999999999999 9999999998888654
Q ss_pred ----cCCcEEEEEeCCCcEEEEEcc
Q psy3710 310 ----RDSSYLCVSSDHGTVHVFSVD 330 (424)
Q Consensus 310 ----~~~~~l~~~~~d~~i~iw~~~ 330 (424)
.++..+.++...|. +|.+.
T Consensus 181 v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 181 VGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEeCCCcEEEEccCCCc--eEEEE
Confidence 23345556555554 56543
|
|
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=95.95 E-value=1.6 Score=41.59 Aligned_cols=196 Identities=12% Similarity=0.079 Sum_probs=105.8
Q ss_pred EEECCCCCeeEeecCC--------e---EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEE
Q psy3710 16 AGFNQDQGCFACGMED--------G---FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMI 84 (424)
Q Consensus 16 ~~~s~~g~~la~g~~~--------~---i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 84 (424)
++..|-|.-+|+..+. - |+||+.. |+.+.......+.+-.+.|+.+...+++. .+|++.+
T Consensus 38 fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~--------k~g~v~V 108 (829)
T KOG2280|consen 38 FACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQ--------KDGTVHV 108 (829)
T ss_pred EEecccCCceEEEecccccccccccceeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEe--------ccceEEE
Confidence 3445666666655444 2 7777753 44444333334467678887776666544 4899999
Q ss_pred EECCCCcEEEEEe-----ecCCeEEEEecCCceEEEe-eccEEEEeecCCCceeEEEee-CCCCCeeEEEeecCCCC--e
Q psy3710 85 WDDLKKQVVICLE-----FNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFET-NPNPKGLCVLCPNSNNS--L 155 (424)
Q Consensus 85 wd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~ 155 (424)
|++ .|+.+.... ....|..+.+..+|..+.+ +|.+.+.+-. ....+...+. ........++...+++. .
T Consensus 109 y~~-~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~-~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~ 186 (829)
T KOG2280|consen 109 YGL-LGEFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGV-EEPKLRKMPDIPYNELPKSCWTVFQPHRQST 186 (829)
T ss_pred eec-chhhhcccccccccccCceeEEEEecCceEEEecCCcEEEEcCC-CcchhhhCCCCCCccCCCcceeEecCCCcce
Confidence 997 444444422 2445777777778877766 7766655422 1112222222 11111112222222211 1
Q ss_pred EEEeeccCCe--EEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe
Q psy3710 156 LAFPGRKSGH--VHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR 225 (424)
Q Consensus 156 l~~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 225 (424)
++. ..+-. ..++...........+......+..+..||+.++|+--...|. |.+-+.+..+...++.
T Consensus 187 ~ll--~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~-i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 187 ILL--DVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGK-IWVVSIDLSQILCEFN 255 (829)
T ss_pred eEE--eechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCc-EEEEecchhhhhhccC
Confidence 111 11100 0112222211222223333466888999999999999999998 9988888777776665
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.85 Score=38.16 Aligned_cols=199 Identities=14% Similarity=0.147 Sum_probs=110.8
Q ss_pred EEEEEeecCCeEEEEecCCceEEEe-eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEe
Q psy3710 92 VVICLEFNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVD 170 (424)
Q Consensus 92 ~~~~~~~~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d 170 (424)
.+..+...+-+..+.++.+..+++- +..++++|+.....+...-.... . -.+..+.-.|++..+ +..+.-..+.|
T Consensus 79 l~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~--gyaygv~vsGn~aYV-adlddgfLivd 154 (370)
T COG5276 79 LLSVINARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-D--GYAYGVYVSGNYAYV-ADLDDGFLIVD 154 (370)
T ss_pred eEEEEehhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccC-C--ceEEEEEecCCEEEE-eeccCcEEEEE
Confidence 3444556777888999998888886 77899999974333322211111 0 122333445888887 66566667789
Q ss_pred CCCCCCCCc--ccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCc---ceeeEEecc--eeeeeecCCCCeEEEE
Q psy3710 171 LADPERPPL--DIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG---QKLNELRRG--LCVLCPNSNNSLLAFP 243 (424)
Q Consensus 171 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~ 243 (424)
+.+...+.. ........-..++.+ |++-..+..|+. +.+-|+... ..+.....+ ...+..+++..+++
T Consensus 155 vsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~G-L~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~v-- 229 (370)
T COG5276 155 VSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGG-LTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLV-- 229 (370)
T ss_pred CCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCC-eEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEE--
Confidence 887644433 222333334566665 567777788888 999999754 233333332 34444444433333
Q ss_pred eecCCeEEEEeCCCCCCCCeeeccCCCCeEEE-EEcCCCCEEEEEeCCCcEEEEEECCC
Q psy3710 244 GRKSGHVHLVDLADPERPPLDIAAHEAPLSCI-ALNQTGTRLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 244 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~d~~~i~iwd~~~ 301 (424)
-.+--+.+-|...+..+...=.-....+.++ .+.-.+++...+..+.. +.+-|...
T Consensus 230 -vy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~g-l~~idisn 286 (370)
T COG5276 230 -VYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKG-LPIIDISN 286 (370)
T ss_pred -EcccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccC-ceeEeccC
Confidence 2444566666666553322111111222222 22224566666666666 67777654
|
|
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.0021 Score=56.55 Aligned_cols=233 Identities=13% Similarity=0.103 Sum_probs=130.3
Q ss_pred EEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe----eccEEEEeecCCCcee
Q psy3710 57 VEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL----EGLIKVYTFIQCPQQL 132 (424)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~i~v~~~~~~~~~~ 132 (424)
..|-+.+.-++.++ .+..+..|| +.|+.......++....++|..++..++. .+.+.+|++.......
T Consensus 40 ~~w~~e~~nlavac-------a~tiv~~YD-~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq 111 (615)
T KOG2247|consen 40 HRWRPEGHNLAVAC-------ANTIVIYYD-KAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ 111 (615)
T ss_pred eeEecCCCceehhh-------hhhHHHhhh-hhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH
Confidence 44556665566665 357888888 45666666667777888888887754443 7899999996322221
Q ss_pred EEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEE
Q psy3710 133 HVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRV 212 (424)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~i 212 (424)
-.+.+.. . -.-+.|++....++. |...|.+.+++..+. +.......|...+.++++.+.+ +.+.++.|.. +.+
T Consensus 112 LE~gg~~-s--~sll~wsKg~~el~i-g~~~gn~viynhgts-R~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~-L~v 184 (615)
T KOG2247|consen 112 LESGGTS-S--KSLLAWSKGTPELVI-GNNAGNIVIYNHGTS-RRIIVMGKHQRRGTQIAVTLED-YVILCDCDNT-LSV 184 (615)
T ss_pred HhccCcc-h--HHHHhhccCCccccc-cccccceEEEeccch-hhhhhhcccccceeEEEecccc-eeeecCcHHH-HHH
Confidence 1222211 1 112678888888888 889999999998875 4444455599999999999976 4555555554 443
Q ss_pred EECCCcceeeEEe-----ccee-----eeeecCCCCeEEEEeecCCeEEEEeCCCCC-CCCeeeccCCCCeEEEEEcCCC
Q psy3710 213 FDTGSGQKLNELR-----RGLC-----VLCPNSNNSLLAFPGRKSGHVHLVDLADPE-RPPLDIAAHEAPLSCIALNQTG 281 (424)
Q Consensus 213 wd~~~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 281 (424)
-...+.. ....+ .... .-.+...+..+.-.-+....+..-.+.... +....++...+.+.|..|--||
T Consensus 185 ~~qeget-a~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval~fq~~~gni~cyrwylDg 263 (615)
T KOG2247|consen 185 TTQEGET-ASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDG 263 (615)
T ss_pred hhhccce-eeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccceEeeecCCceeEEEEeccc
Confidence 3332211 11111 1111 111122222222111111111111111111 1112444556778888888776
Q ss_pred CEEEEEeCCCcEEEEEECCCCceeee
Q psy3710 282 TRLATASYKGTLIRVFDTGSGQKLNE 307 (424)
Q Consensus 282 ~~l~~~~~d~~~i~iwd~~~~~~~~~ 307 (424)
+|..+..-+. |..-...+++....
T Consensus 264 -~i~igf~ag~-iV~iS~h~aeLgae 287 (615)
T KOG2247|consen 264 -YILIGFDAGY-IVSISAHNAELGAE 287 (615)
T ss_pred -ccccccccee-EEEEeccchHHHHH
Confidence 4455555566 66666776666554
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.72 E-value=1 Score=37.73 Aligned_cols=116 Identities=14% Similarity=0.108 Sum_probs=75.6
Q ss_pred ccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc----eeeeeecCCCCeEEEEeecCCeEEEEeCCC
Q psy3710 182 AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG----LCVLCPNSNNSLLAFPGRKSGHVHLVDLAD 257 (424)
Q Consensus 182 ~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 257 (424)
.+-...+.++.|+|+.+.|.+...... -.++=...|+.+++++-. ...+.+..++. ++++--.++.++++.+..
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~-~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPA-AIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCc-eEEEEecCCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcC
Confidence 344556999999999999988887777 566666678888887743 23344444433 344355677777777665
Q ss_pred CCCCC---------eeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 258 PERPP---------LDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 258 ~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
..... ......+.....++|+|....|..+-+..= +.||.+.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P-~~I~~~~ 210 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP-IGIFEVT 210 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC-cEEEEEe
Confidence 43111 111122556788999998877777766655 7777665
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.33 Score=38.29 Aligned_cols=91 Identities=8% Similarity=0.020 Sum_probs=55.8
Q ss_pred CCCeeEeecC-Ce--EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe
Q psy3710 21 DQGCFACGME-DG--FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE 97 (424)
Q Consensus 21 ~g~~la~g~~-~~--i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 97 (424)
+|.++.+.+. +. |+.||+.+++...........+..=-...-++++..... .++.-..+|..+-+++..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw------~egvaf~~d~~t~~~lg~~~ 128 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW------KEGVAFKYDADTLEELGRFS 128 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe------ccceeEEEChHHhhhhcccc
Confidence 3445554433 33 999999998886554443222222222223444444442 47899999999999999998
Q ss_pred ecCCeEEEEecCCceEEEeec
Q psy3710 98 FNAPVKGVRLRRDKIVVVLEG 118 (424)
Q Consensus 98 ~~~~v~~~~~~~~~~~~~~~~ 118 (424)
.++.=+.++..... ++.+||
T Consensus 129 y~GeGWgLt~d~~~-LimsdG 148 (262)
T COG3823 129 YEGEGWGLTSDDKN-LIMSDG 148 (262)
T ss_pred cCCcceeeecCCcc-eEeeCC
Confidence 88887887765554 333444
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.51 E-value=1.4 Score=37.88 Aligned_cols=267 Identities=14% Similarity=0.097 Sum_probs=118.7
Q ss_pred cCCceEEEEECCCCCeeEeecCCeEEEEeCCcCccccc--cccc---CCCeeeEEEeccCceEEEEeCCcCCCcCCCeEE
Q psy3710 9 YKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKER--QDFT---DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVM 83 (424)
Q Consensus 9 h~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~--~~~~---~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~ 83 (424)
-..++..|.|..+..-+++|....| +-..+.++.=.. .... .-....+.+. ++...+++ +..+.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~--~~~g~ivG--------~~g~l 83 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAYGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFD--GNEGWIVG--------EPGLL 83 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETTTEE-EEESSTTSS-EE-----S-----EEEEEEEE--TTEEEEEE--------ETTEE
T ss_pred CCCceEEEEEecCCEEEEEecCCEE-EEECCCCccccccccCCCccceeeEEEEEec--CCceEEEc--------CCceE
Confidence 3558999999977777888876542 333333333111 1111 1124445553 33444455 12344
Q ss_pred EEECCCCcEEEEEe----ecCCeEEEEecCCceEEEeeccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEe
Q psy3710 84 IWDDLKKQVVICLE----FNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFP 159 (424)
Q Consensus 84 iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (424)
+...+.|+.-..+. .+.....+....++...+....=.||...+.++.-+.+.. .....+..+..+++|+++++
T Consensus 84 l~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~-~~~gs~~~~~r~~dG~~vav- 161 (302)
T PF14870_consen 84 LHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVS-ETSGSINDITRSSDGRYVAV- 161 (302)
T ss_dssp EEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE--S----EEEEEE-TTS-EEEE-
T ss_pred EEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEccc-CCcceeEeEEECCCCcEEEE-
Confidence 44445555444443 2344444444444433333222345555445554444332 22344667778899999987
Q ss_pred eccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEEC-CCcceeeE--Ee---cc--eeee
Q psy3710 160 GRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDT-GSGQKLNE--LR---RG--LCVL 231 (424)
Q Consensus 160 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~-~~~~~~~~--~~---~~--~~~~ 231 (424)
+.......-||-... .-...-+.-...|.+|.|.|++...+.+ ..+. |+.=+. ...+.-.. .+ .. +..+
T Consensus 162 s~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~ 238 (302)
T PF14870_consen 162 SSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-IQFSDDPDDGETWSEPIIPIKTNGYGILDL 238 (302)
T ss_dssp ETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-EEEEE-TTEEEEE---B-TTSS--S-EEEE
T ss_pred ECcccEEEEecCCCc-cceEEccCccceehhceecCCCCEEEEe-CCcE-EEEccCCCCccccccccCCcccCceeeEEE
Confidence 666556667775431 1111222345789999999998766654 7777 777762 22222111 11 11 3445
Q ss_pred eecCCCCeEEEEeecCCeEEEEeCCCCCCCCee--eccCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q psy3710 232 CPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD--IAAHEAPLSCIALNQTGTRLATASYKGTLIRV 296 (424)
Q Consensus 232 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~i 296 (424)
++.+++...+ ++..|.+. .....++.=.+. ...-...++.+.|.++. .-...+.+|. |.-
T Consensus 239 a~~~~~~~wa--~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~-~gf~lG~~G~-ll~ 300 (302)
T PF14870_consen 239 AYRPPNEIWA--VGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPD-KGFVLGQDGV-LLR 300 (302)
T ss_dssp EESSSS-EEE--EESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETT-EEEEE-STTE-EEE
T ss_pred EecCCCCEEE--EeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCC-ceEEECCCcE-EEE
Confidence 6776655444 34444333 333443321111 11234568888887654 4555566776 443
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.12 Score=42.27 Aligned_cols=80 Identities=16% Similarity=0.272 Sum_probs=45.6
Q ss_pred eeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEecc
Q psy3710 306 NELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICAD 385 (424)
Q Consensus 306 ~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 385 (424)
..+...+.+|++-+.+|.+++||+.+++.+.....+...-....... ......|..+.++.+|.-|++-+ +
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~--------~~~~~~i~~~~lt~~G~PiV~ls-n 86 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSD--------KSSSPNITSCSLTSNGVPIVTLS-N 86 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhccccccc--------CCCCCcEEEEEEcCCCCEEEEEe-C
Confidence 33555666777777777777777777655433211111100000000 02345677888888887766655 6
Q ss_pred CcEEEEEec
Q psy3710 386 GSYYKFMFN 394 (424)
Q Consensus 386 g~v~~~~~~ 394 (424)
|..+.|+.+
T Consensus 87 g~~y~y~~~ 95 (219)
T PF07569_consen 87 GDSYSYSPD 95 (219)
T ss_pred CCEEEeccc
Confidence 888888865
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.72 Score=43.74 Aligned_cols=68 Identities=6% Similarity=0.153 Sum_probs=46.3
Q ss_pred EEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEc--cCCCEEEEEecCCcEEEEEEC
Q psy3710 146 VLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALN--QTGTRLATASYKGTLIRVFDT 215 (424)
Q Consensus 146 ~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~~i~iwd~ 215 (424)
-+.-+.-++.-++ .+....+.|||.+.+.-.....-...+.|.++.|. |+|+.+++.+.... |.++--
T Consensus 34 li~gss~~k~a~V-~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~-v~l~~Q 103 (631)
T PF12234_consen 34 LISGSSIKKIAVV-DSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH-VLLYTQ 103 (631)
T ss_pred eEeecccCcEEEE-ECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE-EEEEEc
Confidence 3444444554444 66677899999987521111111447889999995 68899999999988 888864
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.36 E-value=1 Score=40.73 Aligned_cols=143 Identities=14% Similarity=0.169 Sum_probs=92.1
Q ss_pred cCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCC---------ceEEEe-eccEEEEeecCCCce
Q psy3710 62 RCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD---------KIVVVL-EGLIKVYTFIQCPQQ 131 (424)
Q Consensus 62 ~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~---------~~~~~~-~~~i~v~~~~~~~~~ 131 (424)
+.+.+..-++. ...++-.|++.|+.+-+......+ -+.|.|. +.+++. +..|.-.|.+..+..
T Consensus 478 dssli~~dg~~------~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNK 550 (776)
T COG5167 478 DSSLIYLDGGE------RDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNK 550 (776)
T ss_pred CcceEEecCCC------cccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCc
Confidence 44445444443 578888899999999998866655 5666664 344443 666666666544433
Q ss_pred eEEEeeCC--CCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcE
Q psy3710 132 LHVFETNP--NPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTL 209 (424)
Q Consensus 132 ~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~ 209 (424)
+...+... ......+. ....+.++++ |+..|.|++||--.. .....+.+....|..+..+.+|+++++.+.. .
T Consensus 551 i~v~esKdY~tKn~Fss~-~tTesGyIa~-as~kGDirLyDRig~-rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-y- 625 (776)
T COG5167 551 IKVVESKDYKTKNKFSSG-MTTESGYIAA-ASRKGDIRLYDRIGK-RAKTALPGLGDAIKHIDVTANGKHILATCKN-Y- 625 (776)
T ss_pred eeeeeehhcccccccccc-ccccCceEEE-ecCCCceeeehhhcc-hhhhcCcccccceeeeEeecCCcEEEEeecc-e-
Confidence 33322211 11111111 2335668888 999999999997643 4445667778889999999999988776654 3
Q ss_pred EEEEECC
Q psy3710 210 IRVFDTG 216 (424)
Q Consensus 210 i~iwd~~ 216 (424)
+.+-|++
T Consensus 626 llL~d~~ 632 (776)
T COG5167 626 LLLTDVP 632 (776)
T ss_pred EEEEecc
Confidence 7777765
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.29 E-value=2.2 Score=38.73 Aligned_cols=190 Identities=12% Similarity=0.106 Sum_probs=109.3
Q ss_pred eEEEEecCCceEEEeeccEEEEeecCCCceeE--EEeeCCCC----Ce-eEEEeecCCCCeEEEeeccCCeEEEEeCCCC
Q psy3710 102 VKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLH--VFETNPNP----KG-LCVLCPNSNNSLLAFPGRKSGHVHLVDLADP 174 (424)
Q Consensus 102 v~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~--~~~~~~~~----~~-~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~ 174 (424)
...+.|..+..++.-++.|-||.-...+.+.. .++.-..+ .. ---+....+..+|+..|.....++-.|++.+
T Consensus 421 ~L~Vgfrn~rsyVtR~n~IGVFk~~de~~LeF~aaiknvs~~~GKSidp~K~mlh~~dssli~~dg~~~~kLykmDIErG 500 (776)
T COG5167 421 HLVVGFRNERSYVTRGNSIGVFKNTDEGSLEFKAAIKNVSDDGGKSIDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERG 500 (776)
T ss_pred eEEEEEcccceeEeeCCeeeeEeccCCcceehhhhhhhccCCCCCcCChhhceeecCCcceEEecCCCcccceeeecccc
Confidence 34455556666666688888887642221110 01100000 00 0113334566777776777778888888876
Q ss_pred CCCCcccccccCCeEEEEEccCC--------CEEEEEecCCcEEEEEECCCc-cee--eEEecceeeeee----cCCCCe
Q psy3710 175 ERPPLDIAAHEAPLSCIALNQTG--------TRLATASYKGTLIRVFDTGSG-QKL--NELRRGLCVLCP----NSNNSL 239 (424)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~~~~~--------~~l~~~~~d~~~i~iwd~~~~-~~~--~~~~~~~~~~~~----~~~~~~ 239 (424)
+.+..+..|... -+.|.|+. +.|+-.| +.. |.-.|.+-. ..+ .+.+.-..--.| ....++
T Consensus 501 -kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~s-vFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGy 575 (776)
T COG5167 501 -KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYS-VFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGY 575 (776)
T ss_pred -eeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccc-eEEecccccCCceeeeeehhccccccccccccccCce
Confidence 677777766554 56677742 3344444 444 555565432 222 122211111111 223444
Q ss_pred EEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 240 LAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 240 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
+++ ++..|.|++||.-..+ ....+++....|..+..+.+|+++++.+..- +.+-|++
T Consensus 576 Ia~-as~kGDirLyDRig~r-AKtalP~lG~aIk~idvta~Gk~ilaTCk~y--llL~d~~ 632 (776)
T COG5167 576 IAA-ASRKGDIRLYDRIGKR-AKTALPGLGDAIKHIDVTANGKHILATCKNY--LLLTDVP 632 (776)
T ss_pred EEE-ecCCCceeeehhhcch-hhhcCcccccceeeeEeecCCcEEEEeecce--EEEEecc
Confidence 554 9999999999976533 3445667788999999999999988877664 7777764
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=2.3 Score=37.53 Aligned_cols=149 Identities=7% Similarity=-0.083 Sum_probs=82.0
Q ss_pred CCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcc-cccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEEC
Q psy3710 10 KNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKE-KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDD 87 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~ 87 (424)
...+..+.+.|++.++++|.... ++.++- .++. ..........+..+.+.+++..+++.. .+.+.+=..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~--------~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR--------GGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEec--------CCEEEEccC
Confidence 45688999999998887777665 333331 1121 111222345677888888877655433 355543233
Q ss_pred CCCcEEEEEee-----cCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEee-CCCCCeeEEEeecCCCCeEEEe
Q psy3710 88 LKKQVVICLEF-----NAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFET-NPNPKGLCVLCPNSNNSLLAFP 159 (424)
Q Consensus 88 ~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 159 (424)
..|+.-..... ...+.++.+.+++..++. +|.+. .... .++....... ...+.....+.+..+++.++
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d-~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-- 318 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKD-GGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-- 318 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCC-CCCCCeECCcCCCCCcceEEEEEeCCCceEE--
Confidence 44444332221 134778888888765555 45443 3332 4444433322 11222355566665666666
Q ss_pred eccCCeEEEEeC
Q psy3710 160 GRKSGHVHLVDL 171 (424)
Q Consensus 160 ~~~dg~i~i~d~ 171 (424)
.+..|.|..|+-
T Consensus 319 ~G~~G~il~~~~ 330 (334)
T PRK13684 319 LGQRGVLLRYVG 330 (334)
T ss_pred ECCCceEEEecC
Confidence 467788877764
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.00 E-value=2.9 Score=38.57 Aligned_cols=278 Identities=12% Similarity=0.051 Sum_probs=136.1
Q ss_pred CCceEEEEECCCCCeeEeecCCeEEEEeCCcCcccccccccC-CCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECC
Q psy3710 10 KNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTD-GGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL 88 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~ 88 (424)
..+|..+.+...| .+-+|+.+|+..||..+++.......+. ..|..+.....+...+ .+ |.-+++.+.+
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dGL~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWV-GT--------dqGv~~~e~~ 233 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDGLSYFDAGRGKALQLASPPLDKAINALIADVQGRLWV-GT--------DQGVYLQEAE 233 (671)
T ss_pred CccceeeeeeccC-cEEEecCCcceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEE-Ee--------ccceEEEchh
Confidence 4567888888887 5778999999999988877655443332 5565555555555443 22 4667777765
Q ss_pred CCcEEEEEe--ecCCeEEEEecCCc-eEEEeeccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCe
Q psy3710 89 KKQVVICLE--FNAPVKGVRLRRDK-IVVVLEGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGH 165 (424)
Q Consensus 89 ~~~~~~~~~--~~~~v~~~~~~~~~-~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~ 165 (424)
..+...... ....|..+.-..++ ..+++++.+-.+.....+-.....+.+.....+..+..+.+|.+-+ +..+|.
T Consensus 234 G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv--~t~~gi 311 (671)
T COG3292 234 GWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWV--GTYGGI 311 (671)
T ss_pred hccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEee--eccCce
Confidence 422111111 12334444333333 4555554444444432222222333343334455666677777654 666666
Q ss_pred EEEEeCCCCCCCCcccccccC-CeEEEEEcc--CCCEEEEEecCCcEEEEEECCCcceeeEE---e-cceeeeeecCCCC
Q psy3710 166 VHLVDLADPERPPLDIAAHEA-PLSCIALNQ--TGTRLATASYKGTLIRVFDTGSGQKLNEL---R-RGLCVLCPNSNNS 238 (424)
Q Consensus 166 i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~l~~~~~d~~~i~iwd~~~~~~~~~~---~-~~~~~~~~~~~~~ 238 (424)
+++-+.+- .....+....+ .+...+..| .+..+.-...-+. +.+-+-.++..++.. . ..+...++.. ++
T Consensus 312 v~~~~a~w--~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~-L~van~stG~~v~sv~q~Rg~nit~~~~d~-~g 387 (671)
T COG3292 312 VRYLTADW--KRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGE-LMVANGSTGELVRSVHQLRGMNITTTLEDS-RG 387 (671)
T ss_pred EEEecchh--hheeeeecCCCchhhhhccCchhcccceeeccccce-EEEecCCCCcEEEEeeeccccccchhhhcc-CC
Confidence 66544321 11111111111 111111111 1111111111122 233333344333322 1 1244455555 33
Q ss_pred eEEEEeecCCeEEEEeCCCCCCCCeee-ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeee
Q psy3710 239 LLAFPGRKSGHVHLVDLADPERPPLDI-AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE 307 (424)
Q Consensus 239 ~~~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~ 307 (424)
.+.+ |+..+-+-.|+.++...+.... ....++|..+.=.|+++ |..|+.+| |.--+++.++....
T Consensus 388 ~lWl-gs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~G--lvk~~pe~~~v~n~ 453 (671)
T COG3292 388 RLWL-GSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGG--LVKRDPESGRVLNL 453 (671)
T ss_pred cEEE-EecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCC--eEecCccccchhcc
Confidence 3444 6666556666666522112111 13456788888889887 88888888 44445555554443
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=94.93 E-value=2.8 Score=37.91 Aligned_cols=66 Identities=15% Similarity=0.281 Sum_probs=50.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeecc--------------C----------------Cc-EEEE
Q psy3710 269 EAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR--------------D----------------SS-YLCV 317 (424)
Q Consensus 269 ~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~--------------~----------------~~-~l~~ 317 (424)
...+.+++.+|++++.|+...-|. |.++|+.++..++.|+. . .. +++-
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGR-VLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCc-EEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 345788999999998888888888 99999999888776541 1 11 2345
Q ss_pred EeCCCcEEEEEccccccc
Q psy3710 318 SSDHGTVHVFSVDEAQKI 335 (424)
Q Consensus 318 ~~~d~~i~iw~~~~~~~~ 335 (424)
+-.-|.|.||.+..|.++
T Consensus 386 aprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRV 403 (415)
T ss_pred eccCCeEEEEecCCCCEE
Confidence 667888999999887754
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.91 E-value=2 Score=36.17 Aligned_cols=151 Identities=13% Similarity=0.108 Sum_probs=87.4
Q ss_pred ceEEEEECCCCCeeEeec--CCe--EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEE-E
Q psy3710 12 GLLYAGFNQDQGCFACGM--EDG--FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIW-D 86 (424)
Q Consensus 12 ~V~~~~~s~~g~~la~g~--~~~--i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iw-d 86 (424)
.+.+.+.++||+.+|.-. +++ +.++... ....... ....+...+|.+++...+...+ +...+++ +
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~-------~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDG-------SGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcC-------CCceEEEEe
Confidence 688999999999888544 444 5555433 3322111 2346777889999666655553 3455555 3
Q ss_pred CCCCcEE-EEEee---cCCeEEEEecCCceEEEe------eccEEEEeecCCCce----e-EEEeeC-CCCCeeEEEeec
Q psy3710 87 DLKKQVV-ICLEF---NAPVKGVRLRRDKIVVVL------EGLIKVYTFIQCPQQ----L-HVFETN-PNPKGLCVLCPN 150 (424)
Q Consensus 87 ~~~~~~~-~~~~~---~~~v~~~~~~~~~~~~~~------~~~i~v~~~~~~~~~----~-~~~~~~-~~~~~~~~~~~~ 150 (424)
..+++.. ..+.. ...|.+++++|||..++. ++.|.+--+.....- + ..+... .....+..+.|.
T Consensus 95 ~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred cCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 3333332 22221 228999999999976664 467777665322111 1 111111 112357789999
Q ss_pred CCCCeEEEeeccCCeEEE-EeCC
Q psy3710 151 SNNSLLAFPGRKSGHVHL-VDLA 172 (424)
Q Consensus 151 ~~~~~l~~~~~~dg~i~i-~d~~ 172 (424)
+++.+++.....++.+.. ....
T Consensus 175 ~~~~L~V~~~~~~~~~~~~v~~d 197 (253)
T PF10647_consen 175 DDSTLVVLGRSAGGPVVRLVSVD 197 (253)
T ss_pred CCCEEEEEeCCCCCceeEEEEcc
Confidence 999988874444554444 4443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.90 E-value=2.7 Score=39.01 Aligned_cols=116 Identities=11% Similarity=0.088 Sum_probs=71.9
Q ss_pred ccCCeEEEEEccC----CCEEEEEecCCcEEEEEECC-----CcceeeE----Eecc----eeeeeecCCCCeEEEEeec
Q psy3710 184 HEAPLSCIALNQT----GTRLATASYKGTLIRVFDTG-----SGQKLNE----LRRG----LCVLCPNSNNSLLAFPGRK 246 (424)
Q Consensus 184 ~~~~v~~~~~~~~----~~~l~~~~~d~~~i~iwd~~-----~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~ 246 (424)
.-..|..+.|.|- ...+++....+. |.+|.+. .++.+.. +..+ .....|+|....+.+-...
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkh-VtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKH-VTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccce-EEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 3355899999984 234555566666 9999875 2232222 2112 2345788888887774444
Q ss_pred CCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCC
Q psy3710 247 SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 247 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~ 301 (424)
|-. .+++++.....++.--...+.|.|.+|.+||+.|+.+-...-.-++||-..
T Consensus 134 dvS-V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 134 DVS-VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cee-EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 433 345555444333322255678999999999998877655543367887653
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=94.88 E-value=2.5 Score=37.25 Aligned_cols=51 Identities=24% Similarity=0.239 Sum_probs=32.5
Q ss_pred eEEEeecCCCCeEEEeeccCCeEEEEeCCCCC-CCCc----ccccccCCeEEEEEccC
Q psy3710 144 LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE-RPPL----DIAAHEAPLSCIALNQT 196 (424)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~-~~~~----~~~~~~~~v~~~~~~~~ 196 (424)
-..+++.|++++++ +...|.|++++..... ..+. ...........++++|+
T Consensus 4 P~~~a~~pdG~l~v--~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 4 PRSMAFLPDGRLLV--AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEEETTSCEEE--EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred ceEEEEeCCCcEEE--EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccc
Confidence 45788999988776 4669999999933221 1111 12233556799999994
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=94.82 E-value=1.7 Score=34.86 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=37.3
Q ss_pred CeEEEEeecCCeEEEEeCCCCCC-CCeeeccCCCCeEEEEEcCCCCEEEEEeCCC
Q psy3710 238 SLLAFPGRKSGHVHLVDLADPER-PPLDIAAHEAPLSCIALNQTGTRLATASYKG 291 (424)
Q Consensus 238 ~~~~~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 291 (424)
+.+++ +...+.|.+|++..... +...+. --+.|..++++..|++|+|--.+.
T Consensus 29 d~Lfv-a~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~ 81 (215)
T PF14761_consen 29 DALFV-AASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKN 81 (215)
T ss_pred ceEEE-EcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeec
Confidence 34444 47778899999995443 333443 348899999999999999976554
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.69 E-value=2.3 Score=35.99 Aligned_cols=192 Identities=15% Similarity=0.161 Sum_probs=111.5
Q ss_pred eEEEeecCCCCeEEEeeccCCeEEEEeCCCC-----CCC-Cccccc-----ccCCeEEEEEccCCC------------EE
Q psy3710 144 LCVLCPNSNNSLLAFPGRKSGHVHLVDLADP-----ERP-PLDIAA-----HEAPLSCIALNQTGT------------RL 200 (424)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~-----~~~-~~~~~~-----~~~~v~~~~~~~~~~------------~l 200 (424)
...++++|.+.+.++ ....+...+||.... .++ +..+.. .....+.+.|+.... .+
T Consensus 25 ~WGia~~p~~~~WVa-dngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGPFWVA-NTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCCEEEe-cCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 457788998888776 777889999998721 111 112221 234567777764322 36
Q ss_pred EEEecCCcEEEEEECCCcce-----eeEEecc-----eeeeeec--CCCCeEEEEeecCCeEEEEeCCCCCCCCe-ee--
Q psy3710 201 ATASYKGTLIRVFDTGSGQK-----LNELRRG-----LCVLCPN--SNNSLLAFPGRKSGHVHLVDLADPERPPL-DI-- 265 (424)
Q Consensus 201 ~~~~~d~~~i~iwd~~~~~~-----~~~~~~~-----~~~~~~~--~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-~~-- 265 (424)
+.+++||+ |.-|...-... ...+... ..-+++. ..+..+.++--..++|.+||-.-.+.... .+
T Consensus 104 if~tEdGT-isaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 104 LFVTEDGT-LSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEeCCce-EEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 78899999 99998532211 1222211 2334443 34667777677889999998764331110 00
Q ss_pred ---ccCCCC-----------eEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec--------------------cC
Q psy3710 266 ---AAHEAP-----------LSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR--------------------RD 311 (424)
Q Consensus 266 ---~~~~~~-----------v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~--------------------~~ 311 (424)
...-.+ |+-..-.++++.=+.+..-|. |-+||+. |+.+++|. ..
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~-VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGY-VNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcce-EEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 000001 111111222222233333456 8888875 66666653 25
Q ss_pred CcEEEEEeCCCcEEEEEccccccccccc
Q psy3710 312 SSYLCVSSDHGTVHVFSVDEAQKINKQS 339 (424)
Q Consensus 312 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 339 (424)
+.+|+---.||+|..||..+++.+..+.
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeec
Confidence 6788877789999999999888665543
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG2377|consensus | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.93 Score=40.37 Aligned_cols=104 Identities=12% Similarity=0.158 Sum_probs=72.6
Q ss_pred ecCCeEEEEecCCceEEEe---eccEEEEeecCCC-ceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCC
Q psy3710 98 FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCP-QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLAD 173 (424)
Q Consensus 98 ~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~ 173 (424)
..++|.++.|++|.+.+|. +.+|.+++...+. +.....+...+...+..++|+.. .-+|. - .+.-+.+|-...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~-i-~~~G~e~y~v~p 141 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAF-I-TDQGIEFYQVLP 141 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEE-E-ecCCeEEEEEch
Confidence 4679999999999999997 8899999984222 22222333334455888999866 44554 2 334566776665
Q ss_pred CCCCCcccccccCCeEEEEEccCCCEEEEEe
Q psy3710 174 PERPPLDIAAHEAPLSCIALNQTGTRLATAS 204 (424)
Q Consensus 174 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 204 (424)
....++..+.|+..|.-..|.++.+.++-++
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 5567777888999999999999887655443
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.25 Score=27.85 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=25.2
Q ss_pred CCeEEEEEccCC---CEEEEEecCCcEEEEEECCCc
Q psy3710 186 APLSCIALNQTG---TRLATASYKGTLIRVFDTGSG 218 (424)
Q Consensus 186 ~~v~~~~~~~~~---~~l~~~~~d~~~i~iwd~~~~ 218 (424)
+.|.+++|+|+. .+|+.+-..+. |.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEcccC
Confidence 468999999854 47777777777 999999853
|
It contains a characteristic DLL sequence motif. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.26 Score=27.78 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCC---CEEEEEeCCCcEEEEEECCC
Q psy3710 270 APLSCIALNQTG---TRLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 270 ~~v~~~~~~~~~---~~l~~~~~d~~~i~iwd~~~ 301 (424)
+.+.+++|+|+. .+|+.+-..+. |.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEccc
Confidence 358899999844 47888777788 99999985
|
It contains a characteristic DLL sequence motif. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=5.5 Score=39.19 Aligned_cols=241 Identities=15% Similarity=0.053 Sum_probs=114.9
Q ss_pred CeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe----e-----ccEEEE
Q psy3710 53 GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL----E-----GLIKVY 123 (424)
Q Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~-----~~i~v~ 123 (424)
.+..+.++|++++++......+ ....+|++-|+.+|+.+...- ...-..++|.+|+..+.. + ..|..+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G--~E~~~l~v~d~~tg~~l~~~i-~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLS--RRQYGIRFRNLETGNWYPELL-DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCC--cEEEEEEEEECCCCCCCCccc-cCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 4666788999998887753210 023578899998886432221 111156899988754443 1 256777
Q ss_pred eecCCC--ceeEEEeeCCCCCeeEEEeecCCCCeEEEee--ccCCeEEEEeCCCCCCCCcccccccCCe-EEEEEccCCC
Q psy3710 124 TFIQCP--QQLHVFETNPNPKGLCVLCPNSNNSLLAFPG--RKSGHVHLVDLADPERPPLDIAAHEAPL-SCIALNQTGT 198 (424)
Q Consensus 124 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~v-~~~~~~~~~~ 198 (424)
++. +. +....++....... .....+.++++++... ..++.+.+++..........+..+...+ ..+. +.. .
T Consensus 205 ~lg-t~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~ 280 (686)
T PRK10115 205 TIG-TPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-H 280 (686)
T ss_pred ECC-CChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-C
Confidence 775 33 23333443333222 2334455777766522 2346788888543211222222222222 2222 222 3
Q ss_pred EEEEEec-C-Cc-EEEEEECCC-cceeeEEec--c--eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec-cCC
Q psy3710 199 RLATASY-K-GT-LIRVFDTGS-GQKLNELRR--G--LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA-AHE 269 (424)
Q Consensus 199 ~l~~~~~-d-~~-~i~iwd~~~-~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~-~~~ 269 (424)
.+...+. + .. .|...++.. ++...-+.. . +..+.+. +..++++...+|.-+++-+.........+. ...
T Consensus 281 ~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~ 358 (686)
T PRK10115 281 RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTREVIGIAFDDP 358 (686)
T ss_pred EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCC
Confidence 3333332 2 12 133334432 211111221 1 2333333 667888788888765554443221222222 222
Q ss_pred CCeEEEEEc--CCCC-EEEEEeC---CCcEEEEEECCCCc
Q psy3710 270 APLSCIALN--QTGT-RLATASY---KGTLIRVFDTGSGQ 303 (424)
Q Consensus 270 ~~v~~~~~~--~~~~-~l~~~~~---d~~~i~iwd~~~~~ 303 (424)
..+..+.++ +++. ++++.+. -+. +..+|+.+++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~ss~~~P~~-~y~~d~~~~~ 397 (686)
T PRK10115 359 AYVTWIAYNPEPETSRLRYGYSSMTTPDT-LFELDMDTGE 397 (686)
T ss_pred ceEeeecccCCCCCceEEEEEecCCCCCE-EEEEECCCCc
Confidence 223333444 3333 4444333 344 8888887764
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=94.43 E-value=3 Score=35.99 Aligned_cols=148 Identities=15% Similarity=0.116 Sum_probs=70.7
Q ss_pred cCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEE-EEeecCCeEEEEecCCceEEE-e-eccEEEEeec
Q psy3710 50 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVI-CLEFNAPVKGVRLRRDKIVVV-L-EGLIKVYTFI 126 (424)
Q Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~-~-~~~i~v~~~~ 126 (424)
..+.+..+..++++.++++...+ +...-||.-...-.. .......|.+|.|.|++.+.. . .|.|+.=+..
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G-------~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~ 215 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRG-------NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDP 215 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTS-------SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-T
T ss_pred CcceeEeEEECCCCcEEEEECcc-------cEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCC
Confidence 35778888888999988777643 455677743222222 222478899999999985544 4 6666666521
Q ss_pred CCCceeEE--EeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCc--ccccccCCeEEEEEccCCCEEEE
Q psy3710 127 QCPQQLHV--FETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL--DIAAHEAPLSCIALNQTGTRLAT 202 (424)
Q Consensus 127 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~ 202 (424)
........ .........+..+++.+++...++ |+. |.+. ...+.++.-.+ ....-....+.+.|.++.+-++
T Consensus 216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~-gg~-G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~- 291 (302)
T PF14870_consen 216 DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAV-GGS-GTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV- 291 (302)
T ss_dssp TEEEEE---B-TTSS--S-EEEEEESSSS-EEEE-EST-T-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-
T ss_pred CCccccccccCCcccCceeeEEEEecCCCCEEEE-eCC-ccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEE-
Confidence 12222111 112223455788999988887775 444 4433 34444422111 1223355688999986644444
Q ss_pred EecCCc
Q psy3710 203 ASYKGT 208 (424)
Q Consensus 203 ~~~d~~ 208 (424)
.+.+|.
T Consensus 292 lG~~G~ 297 (302)
T PF14870_consen 292 LGQDGV 297 (302)
T ss_dssp E-STTE
T ss_pred ECCCcE
Confidence 456775
|
|
| >KOG2377|consensus | Back alignment and domain information |
|---|
Probab=94.32 E-value=3.8 Score=36.78 Aligned_cols=134 Identities=9% Similarity=0.064 Sum_probs=85.2
Q ss_pred EEECCCCCeeEeecCCeEEEEeCCcCcc---cccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcE
Q psy3710 16 AGFNQDQGCFACGMEDGFRIYNCDPLKE---KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQV 92 (424)
Q Consensus 16 ~~~s~~g~~la~g~~~~i~iw~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~ 92 (424)
+-|...++.|.+...+|+.=|-+.+... +.......|+|.++.|++|.+.+|.-- .+.+|.+.+....+.
T Consensus 28 vFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR-------~~~~v~f~nf~~d~~ 100 (657)
T KOG2377|consen 28 VFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQR-------TSKTVDFCNFIPDNS 100 (657)
T ss_pred eeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEe-------cCceEEEEecCCCch
Confidence 4454445666655555666665544333 222223578999999999999998877 579999998743333
Q ss_pred EEEEe-----ecCCeEEEEecCCce-EEEeeccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEE
Q psy3710 93 VICLE-----FNAPVKGVRLRRDKI-VVVLEGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAF 158 (424)
Q Consensus 93 ~~~~~-----~~~~v~~~~~~~~~~-~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (424)
...+. ....|....|+.+.. .+..+..+.+|...+..+.++..+.+. ..+.-+.|.++.+.++.
T Consensus 101 ~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~--~nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 101 QLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHN--LNVNWYMYCPETAVILL 170 (657)
T ss_pred hhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcc--cCccEEEEccccceEee
Confidence 32222 244588999987753 334488888998865555566555555 33555666677666554
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=3.8 Score=39.06 Aligned_cols=64 Identities=11% Similarity=0.145 Sum_probs=31.4
Q ss_pred CCCeEEEeeccC-----CeEEEEeCCCCCCC-CcccccccCCeEEEEEccCCCEEEEEecC------CcEEEEEECCCcc
Q psy3710 152 NNSLLAFPGRKS-----GHVHLVDLADPERP-PLDIAAHEAPLSCIALNQTGTRLATASYK------GTLIRVFDTGSGQ 219 (424)
Q Consensus 152 ~~~~l~~~~~~d-----g~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~~i~iwd~~~~~ 219 (424)
+++..+. |+.+ ..+..||..+..-. ...+...... .+++. -+++..+.|+.+ .. +..||..+++
T Consensus 342 ~~~lyv~-GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~-~~~~iYv~GG~~~~~~~~~~-v~~yd~~t~~ 417 (534)
T PHA03098 342 NNRIYVI-GGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVN-VNNLIYVIGGISKNDELLKT-VECFSLNTNK 417 (534)
T ss_pred CCEEEEE-eCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEE-ECCEEEEECCcCCCCcccce-EEEEeCCCCe
Confidence 4566666 7754 35677887764100 0011100111 12222 255666666632 34 7888887654
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.25 E-value=3.9 Score=36.72 Aligned_cols=140 Identities=14% Similarity=0.091 Sum_probs=71.3
Q ss_pred eEEEeecCCCCeEEEee----------ccCC-eEEEEeCCCCC-CC--CcccccccCCeEEEEEccCCCEEEEEecCCcE
Q psy3710 144 LCVLCPNSNNSLLAFPG----------RKSG-HVHLVDLADPE-RP--PLDIAAHEAPLSCIALNQTGTRLATASYKGTL 209 (424)
Q Consensus 144 ~~~~~~~~~~~~l~~~~----------~~dg-~i~i~d~~~~~-~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~ 209 (424)
...+++.++|+++++.. ...+ .|.+++-..+. +. ...+...-.....+++.++| .++ ++....
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i- 92 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI- 92 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE-
Confidence 45678899998777521 1223 67777654321 21 12333333456889999988 444 444432
Q ss_pred EEEEECCCc-----c--ee-eEEec-----c--eeeeeecCCCCeEEEEeecC------------------CeEEEEeCC
Q psy3710 210 IRVFDTGSG-----Q--KL-NELRR-----G--LCVLCPNSNNSLLAFPGRKS------------------GHVHLVDLA 256 (424)
Q Consensus 210 i~iwd~~~~-----~--~~-~~~~~-----~--~~~~~~~~~~~~~~~~~~~d------------------g~i~i~d~~ 256 (424)
.++.|.... + .+ ..+.. + ...+++.|++..++..|+.. |.|.-++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 334454321 1 11 12222 1 44678888887666555321 344555544
Q ss_pred CCCCCCeeeccCCCCeEEEEEcCCCCEEEEEe
Q psy3710 257 DPERPPLDIAAHEAPLSCIALNQTGTRLATAS 288 (424)
Q Consensus 257 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 288 (424)
..+. ..+...-.....++|+|+|+++++-.
T Consensus 173 g~~~--e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGKL--RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCeE--EEEecCcCCCccceECCCCCEEEEcc
Confidence 3321 12212223345677777777665543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.20 E-value=2.3 Score=33.79 Aligned_cols=157 Identities=15% Similarity=0.118 Sum_probs=86.9
Q ss_pred CCCeEEEEECCCCcEEEEEeec-CCeEE--EEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCC
Q psy3710 78 PNNRVMIWDDLKKQVVICLEFN-APVKG--VRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSN 152 (424)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~~~-~~v~~--~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (424)
....|++||+.+|+.+...... ..+.. +.-..|..+..+ ++.-..+|.+ +.+.+..+.-... -..+ ..|
T Consensus 66 g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~-t~~~lg~~~y~Ge---GWgL--t~d 139 (262)
T COG3823 66 GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDAD-TLEELGRFSYEGE---GWGL--TSD 139 (262)
T ss_pred ccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChH-HhhhhcccccCCc---ceee--ecC
Confidence 4679999999999998876643 23322 223344444444 7888888876 5555554443322 2223 345
Q ss_pred CCeEEEeeccCCeEEEEeCCCCCCCCcccc--ccc---CCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc
Q psy3710 153 NSLLAFPGRKSGHVHLVDLADPERPPLDIA--AHE---APLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG 227 (424)
Q Consensus 153 ~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~--~~~---~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~ 227 (424)
++.|+. +....+++.-|.++. ....++. ... ..++.+.|- +|...+-.-.+.. |...|..+|+.+..+...
T Consensus 140 ~~~Lim-sdGsatL~frdP~tf-a~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~-I~rI~p~sGrV~~widlS 215 (262)
T COG3823 140 DKNLIM-SDGSATLQFRDPKTF-AELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTR-IARIDPDSGRVVAWIDLS 215 (262)
T ss_pred CcceEe-eCCceEEEecCHHHh-hhcceEEEEECCeecccccceeee-ccEEEEeeeeecc-eEEEcCCCCcEEEEEEcc
Confidence 666776 555556666666543 2222111 111 122333333 4555555555555 666677777766554421
Q ss_pred ---------------eeeeeecCCCCeEEEEe
Q psy3710 228 ---------------LCVLCPNSNNSLLAFPG 244 (424)
Q Consensus 228 ---------------~~~~~~~~~~~~~~~~~ 244 (424)
.+.++..|.+..++++|
T Consensus 216 ~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 216 GLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCchhcCccccccccccceeecCcCCeEEEec
Confidence 34567777777777655
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=94.00 E-value=4.2 Score=36.14 Aligned_cols=178 Identities=15% Similarity=0.191 Sum_probs=99.9
Q ss_pred CCCeEEEEECCCCcEEEEEeecCCeEEEEec------CCc--eEEEee-----ccEEEEeecCCCceeEEEeeCCCC---
Q psy3710 78 PNNRVMIWDDLKKQVVICLEFNAPVKGVRLR------RDK--IVVVLE-----GLIKVYTFIQCPQQLHVFETNPNP--- 141 (424)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~------~~~--~~~~~~-----~~i~v~~~~~~~~~~~~~~~~~~~--- 141 (424)
+++-+.+||+ .|+.++.+. .+.++.+... ... ..++++ ..|++|.+......+..+.....+
T Consensus 76 K~~GL~VYdL-~Gk~lq~~~-~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~ 153 (381)
T PF02333_consen 76 KKGGLYVYDL-DGKELQSLP-VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIAT 153 (381)
T ss_dssp TTTEEEEEET-TS-EEEEE--SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-
T ss_pred CCCCEEEEcC-CCcEEEeec-CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCCCccccc
Confidence 4689999998 677777665 2334443332 111 233442 469999987433344443321111
Q ss_pred --CeeEEEee--cC-CCCeEEEeeccCCeEEEEeCCCCCC------CCcccccccCCeEEEEEccCCCEEEEEecCCcEE
Q psy3710 142 --KGLCVLCP--NS-NNSLLAFPGRKSGHVHLVDLADPER------PPLDIAAHEAPLSCIALNQTGTRLATASYKGTLI 210 (424)
Q Consensus 142 --~~~~~~~~--~~-~~~~l~~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i 210 (424)
..+..+|. ++ ++.+.++....+|.+..|.+..... .++.+.. ...+..+........|+.+-++.. |
T Consensus 154 ~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~G-I 231 (381)
T PF02333_consen 154 DLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVG-I 231 (381)
T ss_dssp SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTE-E
T ss_pred ccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEEEecCccE-E
Confidence 12333443 43 5666665588999999998863211 2334433 357888888888889999999988 8
Q ss_pred EEEECCCc-----ceeeEEe-----cceeeeeec--CC-CCeEEEEeecCCeEEEEeCCCCC
Q psy3710 211 RVFDTGSG-----QKLNELR-----RGLCVLCPN--SN-NSLLAFPGRKSGHVHLVDLADPE 259 (424)
Q Consensus 211 ~iwd~~~~-----~~~~~~~-----~~~~~~~~~--~~-~~~~~~~~~~dg~i~i~d~~~~~ 259 (424)
.-|+.+-. +.+.... ..+..+++- .+ ..+++++.-.+++..+|+.....
T Consensus 232 W~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 232 WRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp EEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred EEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 88887622 2222221 224445543 33 35777777788899999987643
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.98 E-value=1.2 Score=42.20 Aligned_cols=103 Identities=12% Similarity=0.121 Sum_probs=69.1
Q ss_pred EEECCCCCeeEeecCCe-EEEEeCCcCcccccccc-cCCCeeeEEEe--ccCceEEEEeCCcCCCcCCCeEEEEECC---
Q psy3710 16 AGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDF-TDGGLGHVEML--FRCNYLALVGGGTHPKYPNNRVMIWDDL--- 88 (424)
Q Consensus 16 ~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~-~~~~i~~~~~~--~~~~~l~~~~~~~~~~~~d~~i~iwd~~--- 88 (424)
+.-|.-++..++.+++. +.|||...+.......+ ..+.|..+.|. |++..++++| ..+.|.++.-.
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-------f~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-------FPHHVLLYTQLRYD 107 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE-------cCcEEEEEEccchh
Confidence 33344444444444444 99999987775433333 46789999996 5667788888 46888888531
Q ss_pred ------CCcEEEEEe---e-cCCeEEEEecCCceEEEe-eccEEEEee
Q psy3710 89 ------KKQVVICLE---F-NAPVKGVRLRRDKIVVVL-EGLIKVYTF 125 (424)
Q Consensus 89 ------~~~~~~~~~---~-~~~v~~~~~~~~~~~~~~-~~~i~v~~~ 125 (424)
+-..++++. + +.+|.+..|.++|.+++. ++.+.|++-
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence 122344443 3 478999999999977765 889999984
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.021 Score=50.59 Aligned_cols=140 Identities=19% Similarity=0.202 Sum_probs=93.2
Q ss_pred eEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEE-EecCCcEEEEEECCCcceee
Q psy3710 144 LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLAT-ASYKGTLIRVFDTGSGQKLN 222 (424)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~~i~iwd~~~~~~~~ 222 (424)
.....|.+.+..++. ++.+..+..||-.. +...... ..+....++|..++..++. +-..+. +.+||+.+.. ..
T Consensus 37 pi~~~w~~e~~nlav-aca~tiv~~YD~ag--q~~le~n-~tg~aldm~wDkegdvlavlAek~~p-iylwd~n~ey-tq 110 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAV-ACANTIVIYYDKAG--QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGP-IYLWDVNSEY-TQ 110 (615)
T ss_pred cceeeEecCCCceeh-hhhhhHHHhhhhhc--ceecccC-CchhHhhhhhccccchhhhhhhcCCC-eeechhhhhh-HH
Confidence 445677888888888 88888999998664 2222222 2345567888887766544 445566 9999997543 22
Q ss_pred EEecc----eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCc
Q psy3710 223 ELRRG----LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGT 292 (424)
Q Consensus 223 ~~~~~----~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 292 (424)
+++.+ .....|++....+++ |...|.+.+|+..+.+..+. ...|...++++++.+.+ +.+.++.|..
T Consensus 111 qLE~gg~~s~sll~wsKg~~el~i-g~~~gn~viynhgtsR~iiv-~Gkh~RRgtq~av~lEd-~vil~dcd~~ 181 (615)
T KOG2247|consen 111 QLESGGTSSKSLLAWSKGTPELVI-GNNAGNIVIYNHGTSRRIIV-MGKHQRRGTQIAVTLED-YVILCDCDNT 181 (615)
T ss_pred HHhccCcchHHHHhhccCCccccc-cccccceEEEeccchhhhhh-hcccccceeEEEecccc-eeeecCcHHH
Confidence 22221 233566777777766 78999999999988664333 22389999999999876 4555555544
|
|
| >KOG4460|consensus | Back alignment and domain information |
|---|
Probab=93.55 E-value=1.4 Score=40.00 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=25.8
Q ss_pred ceEEEEecCC---CeEEEEeccCcEEEEEecCCcce
Q psy3710 367 PCICAFGADS---NSIIVICADGSYYKFMFNSKGEC 399 (424)
Q Consensus 367 ~~~~~~s~~~---~~l~~~~~dg~v~~~~~~~~~~~ 399 (424)
+..++|+|++ ..|..-++|..+++|++.+..++
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 4467899875 57888899999999999865443
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.25 Score=27.30 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=21.1
Q ss_pred cccccCCceEEEEECCCCCeeE-eecCC--e-EEEE
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFA-CGMED--G-FRIY 36 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la-~g~~~--~-i~iw 36 (424)
.+......-...+|||||+.|+ ++..+ + ..||
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3455666788899999999998 44444 4 5555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG1900|consensus | Back alignment and domain information |
|---|
Probab=93.46 E-value=2.3 Score=43.25 Aligned_cols=136 Identities=16% Similarity=0.251 Sum_probs=86.1
Q ss_pred CCeEEEEECCCCcEEEEEe-ecCCeEEEEec---CC--------ceEEEeeccEEEEeecCCC------ceeEEEeeCCC
Q psy3710 79 NNRVMIWDDLKKQVVICLE-FNAPVKGVRLR---RD--------KIVVVLEGLIKVYTFIQCP------QQLHVFETNPN 140 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~---~~--------~~~~~~~~~i~v~~~~~~~------~~~~~~~~~~~ 140 (424)
|+.+.+|+.+++.....+. ....|..+..- |+ ..++++--.|.++-+.-+. .....+.....
T Consensus 98 Dn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~d 177 (1311)
T KOG1900|consen 98 DNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVD 177 (1311)
T ss_pred CCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecC
Confidence 6999999999977777776 56666666542 21 2344445566666543111 11122444455
Q ss_pred CCeeEEEeecCCCCeEEEeeccCCeEEEE--eCCCC---CC----------------CCcccc-cccCCeEEEEEccCCC
Q psy3710 141 PKGLCVLCPNSNNSLLAFPGRKSGHVHLV--DLADP---ER----------------PPLDIA-AHEAPLSCIALNQTGT 198 (424)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~dg~i~i~--d~~~~---~~----------------~~~~~~-~~~~~v~~~~~~~~~~ 198 (424)
+..+.++....+|+.++ ++.||.|+-. ....+ ++ .+..+. .+.++|..+.....-.
T Consensus 178 g~~V~~I~~t~nGRIF~--~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFF--AGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred CceEEEEEeccCCcEEE--eecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 67788888777777666 5777755422 22211 00 011222 5678999999998888
Q ss_pred EEEEEecCCcEEEEEECCC
Q psy3710 199 RLATASYKGTLIRVFDTGS 217 (424)
Q Consensus 199 ~l~~~~~d~~~i~iwd~~~ 217 (424)
.+.+-+..++ |.+||+..
T Consensus 256 IlY~lsek~~-v~~Y~i~~ 273 (1311)
T KOG1900|consen 256 ILYVLSEKGT-VSAYDIGG 273 (1311)
T ss_pred eeeeeccCce-EEEEEccC
Confidence 9999999999 99999976
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=93.40 E-value=7.2 Score=36.86 Aligned_cols=249 Identities=15% Similarity=0.181 Sum_probs=118.3
Q ss_pred CCCCCeeEeecCCe-EEEEeCCcCcc-cccccc-c-CCCeeeEEEeccC-ceEEEEeCCcCCCcCCCeEEEEECCCCcEE
Q psy3710 19 NQDQGCFACGMEDG-FRIYNCDPLKE-KERQDF-T-DGGLGHVEMLFRC-NYLALVGGGTHPKYPNNRVMIWDDLKKQVV 93 (424)
Q Consensus 19 s~~g~~la~g~~~~-i~iw~~~~~~~-~~~~~~-~-~~~i~~~~~~~~~-~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~ 93 (424)
..++..+..+.++| +....+..... +..... . .....++.+..++ +++++++.. .|+.+.-|....-+.+
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~-----gds~l~~~~~~~l~~~ 293 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEF-----GDSQLLQISLSNLEVL 293 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESS-----S-EEEEEEESESEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEec-----CCcEEEEEeCCCcEEE
Confidence 45667788888888 66555544331 111111 1 2334455555555 355555543 4888888886666677
Q ss_pred EEEeecCCeEEEEecCC-----c------eEEEe-----eccEEEEeecCCCc-eeEEEeeCCCCCeeEEEeecC-CCCe
Q psy3710 94 ICLEFNAPVKGVRLRRD-----K------IVVVL-----EGLIKVYTFIQCPQ-QLHVFETNPNPKGLCVLCPNS-NNSL 155 (424)
Q Consensus 94 ~~~~~~~~v~~~~~~~~-----~------~~~~~-----~~~i~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~ 155 (424)
..+..-++|..+++.+. . .++++ +|.+++..-.-..+ .........+...+..+.... ++.+
T Consensus 294 ~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~ 373 (504)
T PF10433_consen 294 DSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSY 373 (504)
T ss_dssp EEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSE
T ss_pred EeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceE
Confidence 77777789999888421 1 34443 67888886421111 011122222233444444322 2556
Q ss_pred EEEeeccCCeEEEEeCCC--CCCCCc-----ccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe--c
Q psy3710 156 LAFPGRKSGHVHLVDLAD--PERPPL-----DIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR--R 226 (424)
Q Consensus 156 l~~~~~~dg~i~i~d~~~--~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~--~ 226 (424)
|+. +.. ..-+++.+.. ....+. .+......+.+-.+. +..++=....+ |++.+...++...... .
T Consensus 374 lv~-S~~-~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~--i~l~~~~~~~~~~~w~~~~ 447 (504)
T PF10433_consen 374 LVL-SFP-NETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKG--IRLIDLEDGKLTQEWKPPA 447 (504)
T ss_dssp EEE-EES-SEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSE--EEEEESSSTSEEEEEE-TT
T ss_pred EEE-EcC-CceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCe--EEEEECCCCeEEEEEeCCC
Confidence 665 433 4445555531 111211 111112222222222 45555555555 8899887777766653 3
Q ss_pred ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec----cCCCCeEEEEEcC
Q psy3710 227 GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA----AHEAPLSCIALNQ 279 (424)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~v~~~~~~~ 279 (424)
+....+.+..+..+++ +..++.+..+.+........... .....|.|+...|
T Consensus 448 ~~~I~~a~~~~~~v~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 448 GSIIVAASINDPQVLV-ALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp S---SEEEESSSEEEE-EE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred CCeEEEEEECCCEEEE-EEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 3444555555566666 56688888888876543222111 2467788887766
|
... |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=93.36 E-value=2.3 Score=35.21 Aligned_cols=137 Identities=15% Similarity=0.147 Sum_probs=68.8
Q ss_pred EEEEeCCCCCCCCcccc-cccCCeEEEEEccCCCEEEEEecC---CcEEEEEECCC---cceeeE----Eecc--eeeee
Q psy3710 166 VHLVDLADPERPPLDIA-AHEAPLSCIALNQTGTRLATASYK---GTLIRVFDTGS---GQKLNE----LRRG--LCVLC 232 (424)
Q Consensus 166 i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d---~~~i~iwd~~~---~~~~~~----~~~~--~~~~~ 232 (424)
-.+||+.++. .+.+. .......+-.+-+||+++.+|+.. .. +++++... .....+ +..+ .....
T Consensus 48 s~~yD~~tn~--~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~-ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 48 SVEYDPNTNT--FRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKA-IRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEecCCCc--EEeccCCCCCcccCcCCCCCCCEEEeCCCCccccc-eEEEecCCCCCCCCceECcccccCCCccccce
Confidence 4578888752 22222 122333444577899999988752 34 78887644 111111 1111 33456
Q ss_pred ecCCCCeEEEEeecCCeEEEEeCCCCCCCCee---ecc-----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCce
Q psy3710 233 PNSNNSLLAFPGRKSGHVHLVDLADPERPPLD---IAA-----HEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK 304 (424)
Q Consensus 233 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~---~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~ 304 (424)
.-++|+.+++.|....+..+|.-......... +.. ...----+...|+|+.++.+..+. .|||..+.+.
T Consensus 125 ~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s---~i~d~~~n~v 201 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS---IIYDYKTNTV 201 (243)
T ss_pred ECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc---EEEeCCCCeE
Confidence 67889988886666555556554322110110 000 001111334456666666655543 4556665555
Q ss_pred eeee
Q psy3710 305 LNEL 308 (424)
Q Consensus 305 ~~~~ 308 (424)
+.++
T Consensus 202 ~~~l 205 (243)
T PF07250_consen 202 VRTL 205 (243)
T ss_pred EeeC
Confidence 4444
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.69 Score=37.82 Aligned_cols=63 Identities=14% Similarity=0.195 Sum_probs=44.0
Q ss_pred EEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEE---------------eecCCeEEEEecCCceEEEe--ecc
Q psy3710 57 VEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICL---------------EFNAPVKGVRLRRDKIVVVL--EGL 119 (424)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~~--~~~ 119 (424)
+.+...++++++++ .+|.+++||+.+++.+..- .....|..+.++.+|.-++. +|.
T Consensus 16 ~~l~~~~~~Ll~iT-------~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~ 88 (219)
T PF07569_consen 16 SFLECNGSYLLAIT-------SSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGD 88 (219)
T ss_pred EEEEeCCCEEEEEe-------CCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 34556788888888 5799999999998876533 12345677777777755544 677
Q ss_pred EEEEeec
Q psy3710 120 IKVYTFI 126 (424)
Q Consensus 120 i~v~~~~ 126 (424)
.+.|+.+
T Consensus 89 ~y~y~~~ 95 (219)
T PF07569_consen 89 SYSYSPD 95 (219)
T ss_pred EEEeccc
Confidence 7777753
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.93 E-value=4.8 Score=33.58 Aligned_cols=224 Identities=12% Similarity=0.054 Sum_probs=130.5
Q ss_pred eeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEeeccEEEEeecCCCceeE
Q psy3710 55 GHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLH 133 (424)
Q Consensus 55 ~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~ 133 (424)
..++-.+++....+..+. +.|--.|..+|+....-- .......+..-||+..-.+|...-|-.+....-...
T Consensus 65 ~dvapapdG~VWft~qg~-------gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt 137 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGT-------GAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVT 137 (353)
T ss_pred cccccCCCCceEEecCcc-------ccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceE
Confidence 446667777766666643 566667888887655333 456778888999987777754434444432222222
Q ss_pred EE--eeCCCCCeeEEEeecCCCCeEEEeecc---------CCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEE
Q psy3710 134 VF--ETNPNPKGLCVLCPNSNNSLLAFPGRK---------SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLAT 202 (424)
Q Consensus 134 ~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 202 (424)
.+ .............|.+.|.+-++ +.. .+.|++|+...+ ..-+.|+..|+|..-++
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt-~q~G~yGrLdPa~~~i~vfpaPqG-----------~gpyGi~atpdGsvwya 205 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFT-GQIGAYGRLDPARNVISVFPAPQG-----------GGPYGICATPDGSVWYA 205 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEe-eccccceecCcccCceeeeccCCC-----------CCCcceEECCCCcEEEE
Confidence 22 22222334556778888988876 542 123444443322 33467888999988888
Q ss_pred EecCCcEEEEEECCCcceeeEEec------ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEE
Q psy3710 203 ASYKGTLIRVFDTGSGQKLNELRR------GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIA 276 (424)
Q Consensus 203 ~~~d~~~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 276 (424)
.-.+.. |-..|..++.. ..+.. +...+..+|.+. +.++-...+.++.||.....-....+.+.+..-.++-
T Consensus 206 slagna-iaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~r 282 (353)
T COG4257 206 SLAGNA-IARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMR 282 (353)
T ss_pred eccccc-eEEcccccCCc-ceecCCCcccccccccccCccCc-EEEeccCCceeeEeCcccccceeeeCCCCCCCcceee
Confidence 777777 77778766622 22221 122333334443 4444666778888887765433334445556666777
Q ss_pred EcCCCCEEEEEeCCCcEEEEEECCC
Q psy3710 277 LNQTGTRLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 277 ~~~~~~~l~~~~~d~~~i~iwd~~~ 301 (424)
....++.-.+--.-+. |.-+|.++
T Consensus 283 VD~~grVW~sea~aga-i~rfdpet 306 (353)
T COG4257 283 VDRHGRVWLSEADAGA-IGRFDPET 306 (353)
T ss_pred eccCCcEEeeccccCc-eeecCccc
Confidence 7666665554444455 66666554
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.68 E-value=9.6 Score=36.37 Aligned_cols=92 Identities=13% Similarity=0.064 Sum_probs=40.7
Q ss_pred EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe--ecCCeEEEEecCC
Q psy3710 33 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE--FNAPVKGVRLRRD 110 (424)
Q Consensus 33 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~ 110 (424)
+..||..+.+.......+........... ++.+.+.||..... .-..+..||..+++-...-. .+..-.+++...+
T Consensus 313 v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~ 390 (534)
T PHA03098 313 VVSYDTKTKSWNKVPELIYPRKNPGVTVF-NNRIYVIGGIYNSI-SLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNN 390 (534)
T ss_pred EEEEeCCCCeeeECCCCCcccccceEEEE-CCEEEEEeCCCCCE-ecceEEEEcCCCCceeeCCCcCcCCccceEEEECC
Confidence 66777766554322222111111112222 44555555532111 12467788887765433211 1221223333344
Q ss_pred ceEEEee--------ccEEEEeec
Q psy3710 111 KIVVVLE--------GLIKVYTFI 126 (424)
Q Consensus 111 ~~~~~~~--------~~i~v~~~~ 126 (424)
..++... ..+..||..
T Consensus 391 ~iYv~GG~~~~~~~~~~v~~yd~~ 414 (534)
T PHA03098 391 LIYVIGGISKNDELLKTVECFSLN 414 (534)
T ss_pred EEEEECCcCCCCcccceEEEEeCC
Confidence 4444431 357788875
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=92.67 E-value=11 Score=37.07 Aligned_cols=28 Identities=11% Similarity=0.001 Sum_probs=23.3
Q ss_pred CceEEEEECCCCCeeEeecCCeEEEEeC
Q psy3710 11 NGLLYAGFNQDQGCFACGMEDGFRIYNC 38 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la~g~~~~i~iw~~ 38 (424)
-.|..+.+||+|++||..+..+|.|-.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~L 112 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLEL 112 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEe
Confidence 4788999999999999888888666665
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=92.34 E-value=11 Score=38.19 Aligned_cols=140 Identities=10% Similarity=0.015 Sum_probs=80.4
Q ss_pred CCeEEEEecCCceEEEe-----eccEEEEeecCCCc----eeEEEe----eCCCCCeeEEEeecCCCCeEEEeeccCCeE
Q psy3710 100 APVKGVRLRRDKIVVVL-----EGLIKVYTFIQCPQ----QLHVFE----TNPNPKGLCVLCPNSNNSLLAFPGRKSGHV 166 (424)
Q Consensus 100 ~~v~~~~~~~~~~~~~~-----~~~i~v~~~~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i 166 (424)
-++..+...+|....+. +-.|..||++.-.. ....+. ....+....++.|+|.-....+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 35555666666533332 33788889852111 011111 112233445667776544433336788899
Q ss_pred EEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc-------eeeeeecCCCCe
Q psy3710 167 HLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG-------LCVLCPNSNNSL 239 (424)
Q Consensus 167 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~ 239 (424)
++..+.........+ ......++++|+|.|+.++.|-..|+ +.-|.. ..+....++.+ +..++|-.....
T Consensus 181 ~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt-~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGT-EVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCe-EEEeec-ccceeecccCCCcCCCcceeEEEEecceeE
Confidence 888776432222222 34567899999999999999999998 877765 33333333322 445566555555
Q ss_pred EEE
Q psy3710 240 LAF 242 (424)
Q Consensus 240 ~~~ 242 (424)
+++
T Consensus 258 lvv 260 (1405)
T KOG3630|consen 258 LVV 260 (1405)
T ss_pred EEE
Confidence 544
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=92.17 E-value=7.9 Score=34.19 Aligned_cols=105 Identities=15% Similarity=0.051 Sum_probs=51.4
Q ss_pred ceEEEEECCCCCeeEeecCCeEEEEeCCcCc-c-cc----cccccCCCeeeEEEecc---CceEEEEeCC--cCCCcCCC
Q psy3710 12 GLLYAGFNQDQGCFACGMEDGFRIYNCDPLK-E-KE----RQDFTDGGLGHVEMLFR---CNYLALVGGG--THPKYPNN 80 (424)
Q Consensus 12 ~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~-~-~~----~~~~~~~~i~~~~~~~~---~~~l~~~~~~--~~~~~~d~ 80 (424)
.-+.|+|.|||++|++-..+.|++++.+... . +. ...........+++.|+ ..++.++... ......+.
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 3578999999988777664449999833222 1 11 11223456777888874 2333333311 00000122
Q ss_pred eEEEEECCCC-------cEEE-EEee----cCCeEEEEecCCceEEEe
Q psy3710 81 RVMIWDDLKK-------QVVI-CLEF----NAPVKGVRLRRDKIVVVL 116 (424)
Q Consensus 81 ~i~iwd~~~~-------~~~~-~~~~----~~~v~~~~~~~~~~~~~~ 116 (424)
.|.-|....+ +.+. .+.. ...-..+.|.||+.+.++
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs 130 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVS 130 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEE
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEE
Confidence 4444444333 1111 1111 245577999999966654
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=92.14 E-value=1.2 Score=24.91 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=29.1
Q ss_pred ccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEe
Q psy3710 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRL 107 (424)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~ 107 (424)
|+++.+.++..+ +++|.++|..+++.+..+........+.|
T Consensus 1 pd~~~lyv~~~~------~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSG------SNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCC------CCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 456666665543 68999999999998888875554555554
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG4460|consensus | Back alignment and domain information |
|---|
Probab=91.71 E-value=3 Score=38.09 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=52.3
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEEECCC-cceeeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCC
Q psy3710 187 PLSCIALNQTGTRLATASYKGTLIRVFDTGS-GQKLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPP 262 (424)
Q Consensus 187 ~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~ 262 (424)
.|..+..++.|..++-++.+| |.+..+.. .-.-..++.+ +.+-. .+-+..++.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~G--i~vMeLp~rwG~~s~~eDgk~~v~CRt-~~i~~~~ft-------------------- 161 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKG--LMVMELPKRWGKNSEFEDGKSTVNCRT-TPVAERFFT-------------------- 161 (741)
T ss_pred EEEEEEecCCCceEEEecCCe--eEEEEchhhcCccceecCCCceEEEEe-ecccceeec--------------------
Confidence 467788899999999998888 56655521 1111122211 11111 111111111
Q ss_pred eeeccCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEEECCCCceee
Q psy3710 263 LDIAAHEAPLSCIALNQTG---TRLATASYKGTLIRVFDTGSGQKLN 306 (424)
Q Consensus 263 ~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~~i~iwd~~~~~~~~ 306 (424)
....-.+...+|+|+. ..|..-+.|.. ||+||+...+.+.
T Consensus 162 ---ss~~ltl~Qa~WHP~S~~D~hL~iL~sdnv-iRiy~lS~~tely 204 (741)
T KOG4460|consen 162 ---SSTSLTLKQAAWHPSSILDPHLVLLTSDNV-IRIYSLSEPTELY 204 (741)
T ss_pred ---cCCceeeeeccccCCccCCceEEEEecCcE-EEEEecCCcchhh
Confidence 0122345667888864 57777788888 9999987655543
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=91.37 E-value=6 Score=32.84 Aligned_cols=141 Identities=11% Similarity=0.094 Sum_probs=74.4
Q ss_pred eEEEEECCCCcEEEEEeecCC--eEEEEecCCceEEEe------eccEEEEeecC-CCc-eeEEEe-eCCCCCeeEEEee
Q psy3710 81 RVMIWDDLKKQVVICLEFNAP--VKGVRLRRDKIVVVL------EGLIKVYTFIQ-CPQ-QLHVFE-TNPNPKGLCVLCP 149 (424)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~------~~~i~v~~~~~-~~~-~~~~~~-~~~~~~~~~~~~~ 149 (424)
.-.+||+.+++... +..... ..+-.+-+||.++.. ...+++++... ... ...... .-..+..-.....
T Consensus 47 ~s~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 47 HSVEYDPNTNTFRP-LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEEecCCCcEEe-ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 34578988876533 332222 233456788988876 23578887642 011 111110 0111112223344
Q ss_pred cCCCCeEEEeeccCCeEEEEeCCCCCCCCccc--cc------ccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCccee
Q psy3710 150 NSNNSLLAFPGRKSGHVHLVDLADPERPPLDI--AA------HEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL 221 (424)
Q Consensus 150 ~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~--~~------~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~ 221 (424)
-+||+.|++.|....+..+|.-.........+ .. ...--..+...|+|+.++.+..+. .|||..+++.+
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s---~i~d~~~n~v~ 202 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS---IIYDYKTNTVV 202 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc---EEEeCCCCeEE
Confidence 57999999844444455566543211111111 10 111223566689999999887654 57899888777
Q ss_pred eEEe
Q psy3710 222 NELR 225 (424)
Q Consensus 222 ~~~~ 225 (424)
+.++
T Consensus 203 ~~lP 206 (243)
T PF07250_consen 203 RTLP 206 (243)
T ss_pred eeCC
Confidence 7665
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=91.32 E-value=2.8 Score=32.87 Aligned_cols=30 Identities=10% Similarity=0.127 Sum_probs=24.9
Q ss_pred CCceEEEEecCC------CeEEEEeccCcEEEEEec
Q psy3710 365 DPPCICAFGADS------NSIIVICADGSYYKFMFN 394 (424)
Q Consensus 365 ~~~~~~~~s~~~------~~l~~~~~dg~v~~~~~~ 394 (424)
..+..++|||-| -.|++.+.+|.|.+|.-.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 367889999944 378999999999999865
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=91.32 E-value=4.5 Score=29.70 Aligned_cols=104 Identities=13% Similarity=0.191 Sum_probs=62.2
Q ss_pred EEEEECCCCCeeEeecCCe-EEEEeCCcCccc--------ccccccCCCeeeEEEec-----cCceEEEEeCCcCCCcCC
Q psy3710 14 LYAGFNQDQGCFACGMEDG-FRIYNCDPLKEK--------ERQDFTDGGLGHVEMLF-----RCNYLALVGGGTHPKYPN 79 (424)
Q Consensus 14 ~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~--------~~~~~~~~~i~~~~~~~-----~~~~l~~~~~~~~~~~~d 79 (424)
..-+|......|++++..+ |.|++....... ..... ...|++++--+ ..+.|+..+ .
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt--------~ 72 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGT--------Q 72 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEec--------c
Confidence 4456777778899887777 999986544321 11222 34555554433 224444444 5
Q ss_pred CeEEEEECCCCcEEEEEeecCCeEEEEec-----CCceEEEe-eccEEEEeec
Q psy3710 80 NRVMIWDDLKKQVVICLEFNAPVKGVRLR-----RDKIVVVL-EGLIKVYTFI 126 (424)
Q Consensus 80 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~-~~~i~v~~~~ 126 (424)
..+..||+....-+..-..++.|+++.+- +....++. ...|.-||..
T Consensus 73 t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 73 TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence 79999999887776655567788888773 22222222 4455556653
|
|
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.28 Score=47.34 Aligned_cols=145 Identities=16% Similarity=0.190 Sum_probs=84.4
Q ss_pred cCCeEEEEeCCCCCCCCcccccccCCeEEEEEcc-CCCEEEEEecCCcEEEEEECC--CcceeeEEe--------cceee
Q psy3710 162 KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ-TGTRLATASYKGTLIRVFDTG--SGQKLNELR--------RGLCV 230 (424)
Q Consensus 162 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~~i~iwd~~--~~~~~~~~~--------~~~~~ 230 (424)
..+.+++-+....-.....+++..+.+-.+.|.. +...+. -.-|. +.+||+. .|+....+. .....
T Consensus 109 ~~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~-lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~ 185 (1283)
T KOG1916|consen 109 MENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGE-LFVYDVDVLQGEIQPQLEVTPITPYGSDPQL 185 (1283)
T ss_pred hhhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhh-hheeehHhhccccccceEEeecCcCCCCcce
Confidence 3456676665543112245667788888888843 212222 22355 7888875 343332222 11222
Q ss_pred eeecC--CCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEE-----------EcCCCCEEEEEeCCCcEEEEE
Q psy3710 231 LCPNS--NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIA-----------LNQTGTRLATASYKGTLIRVF 297 (424)
Q Consensus 231 ~~~~~--~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~~~~~d~~~i~iw 297 (424)
+.|.| .++..+..+..+++|++....+... ..+.+|...++.++ .||||..++.++.||. ++.|
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~ 262 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFY 262 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-ccee
Confidence 33322 1223334477888888877765432 44456777666554 5899999999999998 8877
Q ss_pred ECC-----CCceeeeeccCC
Q psy3710 298 DTG-----SGQKLNELRRDS 312 (424)
Q Consensus 298 d~~-----~~~~~~~~~~~~ 312 (424)
.+. .-.++..++|+.
T Consensus 263 Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 263 QIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeeeeccccHhhhhccCCCC
Confidence 653 345666676643
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=90.97 E-value=15 Score=35.84 Aligned_cols=142 Identities=11% Similarity=0.138 Sum_probs=78.1
Q ss_pred CCeeEeecCCeEEEEeCCcCccccc------cc-------c---------cCCCeeeEEEe--ccCceEEEEeCCcCCCc
Q psy3710 22 QGCFACGMEDGFRIYNCDPLKEKER------QD-------F---------TDGGLGHVEML--FRCNYLALVGGGTHPKY 77 (424)
Q Consensus 22 g~~la~g~~~~i~iw~~~~~~~~~~------~~-------~---------~~~~i~~~~~~--~~~~~l~~~~~~~~~~~ 77 (424)
..+|.++....|.||+.+....... .. . ....|..+... -....|+++.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~------- 121 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCT------- 121 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEe-------
Confidence 7788888888899999765433110 00 0 01123333222 2234455555
Q ss_pred CCCeEEEEECCC-------C----c---------EEEEEeecCCeEEEEec--CCceEEEe---eccEEEEeecCCCcee
Q psy3710 78 PNNRVMIWDDLK-------K----Q---------VVICLEFNAPVKGVRLR--RDKIVVVL---EGLIKVYTFIQCPQQL 132 (424)
Q Consensus 78 ~d~~i~iwd~~~-------~----~---------~~~~~~~~~~v~~~~~~--~~~~~~~~---~~~i~v~~~~~~~~~~ 132 (424)
.||.|.+|..++ . + +...+..+..+++++++ ....++|. ...|.||-+.......
T Consensus 122 DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~ 201 (717)
T PF08728_consen 122 DDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERF 201 (717)
T ss_pred cCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccc
Confidence 589999996521 1 0 11223346788999998 77777765 4567777664221111
Q ss_pred EEEeeCCCCCeeEEEeecCC-----CC-eEEEeeccCCeEEEEeC
Q psy3710 133 HVFETNPNPKGLCVLCPNSN-----NS-LLAFPGRKSGHVHLVDL 171 (424)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~-----~~-~l~~~~~~dg~i~i~d~ 171 (424)
...+.+.....+.+++|-++ |. .+++ ++-.|.+.+|++
T Consensus 202 ~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a-~dI~G~v~~~~I 245 (717)
T PF08728_consen 202 YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVA-TDISGEVWTFKI 245 (717)
T ss_pred ccccccccccCCCeeEeecCCCCCccceEEEE-EeccCcEEEEEE
Confidence 11112222233455555332 32 4554 899999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=90.96 E-value=3.9 Score=41.14 Aligned_cols=139 Identities=12% Similarity=-0.031 Sum_probs=85.6
Q ss_pred CeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEE--------EEe----ecCCeEEEEecCCc---eEEEe-
Q psy3710 53 GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVI--------CLE----FNAPVKGVRLRRDK---IVVVL- 116 (424)
Q Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~--------~~~----~~~~v~~~~~~~~~---~~~~~- 116 (424)
.+..+...+|....++.... .+..|..+|+++-..-. .-. ...-..++.|+|.- ..+..
T Consensus 102 pi~~~v~~~D~t~s~v~~ts-----ng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~ 176 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTS-----NGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLS 176 (1405)
T ss_pred cceEEEeccCCceEEEEEec-----CCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhcc
Confidence 44455556676666555533 35688999986532211 111 12345667787653 22222
Q ss_pred eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccc----cccCCeEEEE
Q psy3710 117 EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA----AHEAPLSCIA 192 (424)
Q Consensus 117 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~v~~~~ 192 (424)
|+.|.+..+.........+. -....++++|+|.|+.+++ |...|++.-|...-. ....+. .....|.+|.
T Consensus 177 dlsl~V~~~~~~~~~v~s~p---~t~~~Tav~WSprGKQl~i-G~nnGt~vQy~P~le--ik~~ip~Pp~~e~yrvl~v~ 250 (1405)
T KOG3630|consen 177 DLSLRVKSTKQLAQNVTSFP---VTNSQTAVLWSPRGKQLFI-GRNNGTEVQYEPSLE--IKSEIPEPPVEENYRVLSVT 250 (1405)
T ss_pred ccchhhhhhhhhhhhhcccC---cccceeeEEeccccceeeE-ecCCCeEEEeecccc--eeecccCCCcCCCcceeEEE
Confidence 88999988764333333322 2244789999999999999 999999999876532 111111 1157899999
Q ss_pred EccCCCEEEE
Q psy3710 193 LNQTGTRLAT 202 (424)
Q Consensus 193 ~~~~~~~l~~ 202 (424)
|-....++++
T Consensus 251 Wl~t~eflvv 260 (1405)
T KOG3630|consen 251 WLSTQEFLVV 260 (1405)
T ss_pred EecceeEEEE
Confidence 9877666654
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=90.93 E-value=11 Score=33.25 Aligned_cols=105 Identities=10% Similarity=0.018 Sum_probs=50.1
Q ss_pred CCCEEEEEecC-----CcEEEEEECCCccee---eEE---eccee-eeeecCCCCeEEEEeec-----CCeEEEEeCCCC
Q psy3710 196 TGTRLATASYK-----GTLIRVFDTGSGQKL---NEL---RRGLC-VLCPNSNNSLLAFPGRK-----SGHVHLVDLADP 258 (424)
Q Consensus 196 ~~~~l~~~~~d-----~~~i~iwd~~~~~~~---~~~---~~~~~-~~~~~~~~~~~~~~~~~-----dg~i~i~d~~~~ 258 (424)
++..++.|+.+ .. +..+|+.+.+-. ..+ +.... ..+...++ .+.+.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~-v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~-~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSS-VYRITLDESKEELICETIGNLPFTFENGSACYKDG-TLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCcee-EEEEEEcCCceeeeeeEcCCCCcCccCceEEEECC-EEEEEeCcCCCccCceEEEEcCCCC
Confidence 44566666654 24 667777665431 111 11111 11112233 44444553 346888998875
Q ss_pred CCCCe-eeccCCCCeEEEEEcCCCCEEEEEeCCCc---EEEEEECCCCc
Q psy3710 259 ERPPL-DIAAHEAPLSCIALNQTGTRLATASYKGT---LIRVFDTGSGQ 303 (424)
Q Consensus 259 ~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~---~i~iwd~~~~~ 303 (424)
+-... .+.. .......+...++++.+.|+.++. .+..||+++.+
T Consensus 150 ~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 150 EWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 42111 1111 111122222345677777776542 15678887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.81 E-value=9.2 Score=32.37 Aligned_cols=183 Identities=10% Similarity=0.111 Sum_probs=102.0
Q ss_pred cCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe---ecCCeEEEEecCCceEEEe-eccEEEEeecCCCceeE--EE
Q psy3710 62 RCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE---FNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQLH--VF 135 (424)
Q Consensus 62 ~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~--~~ 135 (424)
.+++...+. .+.-++|.|+.+...-..+. ..+--.++..+.+-.+++- +..+-+.|+.....+.. .+
T Consensus 95 se~yvyvad-------~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagry 167 (370)
T COG5276 95 SEEYVYVAD-------WSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRY 167 (370)
T ss_pred cccEEEEEc-------CCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeee
Confidence 345555555 34788999987665444333 3456677888888777776 77788888864433332 22
Q ss_pred eeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccC-CeEEEEEccCCCEEEEEecCCcEEEEEE
Q psy3710 136 ETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEA-PLSCIALNQTGTRLATASYKGTLIRVFD 214 (424)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~~i~iwd 214 (424)
...... ...++.| |++-.. +..|+-+.+-|+..+..+...-.-..+ .+.++..+++-.+++. .+.. +.+-|
T Consensus 168 a~~~~d--~~~v~IS--Gn~AYv-A~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vv--y~eg-vlivd 239 (370)
T COG5276 168 ALPGGD--THDVAIS--GNYAYV-AWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVV--YDEG-VLIVD 239 (370)
T ss_pred ccCCCC--ceeEEEe--cCeEEE-EEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEE--cccc-eEEEe
Confidence 222211 1233333 566665 778999999999986444332222223 6777777766444443 3334 78888
Q ss_pred CCCcceeeEEec--c--eeeeeecCCCCeEEEEeecCCeEEEEeCCCCC
Q psy3710 215 TGSGQKLNELRR--G--LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE 259 (424)
Q Consensus 215 ~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 259 (424)
..+.+....+.. . .....-.+-....++....+.-+.+.|..++.
T Consensus 240 ~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 240 VSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred cCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCC
Confidence 776653333321 1 11111112222333335566666677776654
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.61 E-value=1.4 Score=39.25 Aligned_cols=159 Identities=10% Similarity=0.049 Sum_probs=90.2
Q ss_pred eEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccc-cC----CeE-EEEEccCCCEEEEEecCCcEEEEE-ECC
Q psy3710 144 LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAH-EA----PLS-CIALNQTGTRLATASYKGTLIRVF-DTG 216 (424)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~----~v~-~~~~~~~~~~l~~~~~d~~~i~iw-d~~ 216 (424)
+..+-..|||+.+.+ -+ ...+.++++.+..-..+.+... .+ .|+ ++..-..|..++.++.||. |.-| |.+
T Consensus 223 v~qllL~Pdg~~LYv-~~-g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~-vsQWFdvr 299 (733)
T COG4590 223 VSQLLLTPDGKTLYV-RT-GSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGL-VSQWFDVR 299 (733)
T ss_pred hHhhEECCCCCEEEE-ec-CCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCc-eeeeeeee
Confidence 445667899999887 22 2688888887642222222111 11 122 2222335667888899998 7766 554
Q ss_pred Cc-ce----eeEEecc-eeeeeecC-CCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeC
Q psy3710 217 SG-QK----LNELRRG-LCVLCPNS-NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY 289 (424)
Q Consensus 217 ~~-~~----~~~~~~~-~~~~~~~~-~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 289 (424)
.+ .+ ++.++-. ...-...| ....-+++-+.+|++..+.....+.... ..--..+.-+++||++.++++-..
T Consensus 300 ~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~--~~~~~~~~~~~~Sp~~~~Ll~e~~ 377 (733)
T COG4590 300 RDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF--ERAYQAPQLVAMSPNQAYLLSEDQ 377 (733)
T ss_pred cCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh--hhhhcCcceeeeCcccchheeecC
Confidence 33 21 1222211 11112222 3344555567788888776655442221 122235667899999999987554
Q ss_pred CCcEEEEEECCCCceeeeec
Q psy3710 290 KGTLIRVFDTGSGQKLNELR 309 (424)
Q Consensus 290 d~~~i~iwd~~~~~~~~~~~ 309 (424)
.+ ++++.+++..+.-+|+
T Consensus 378 gk--i~~~~l~Nr~Peisws 395 (733)
T COG4590 378 GK--IRLAQLENRNPEISWS 395 (733)
T ss_pred Cc--eEEEEecCCCCCccHH
Confidence 44 9999998876655544
|
|
| >KOG1983|consensus | Back alignment and domain information |
|---|
Probab=89.54 E-value=23 Score=36.50 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=24.3
Q ss_pred eeEEEeecCCCCeEEEeeccCCeEEEEeCC
Q psy3710 143 GLCVLCPNSNNSLLAFPGRKSGHVHLVDLA 172 (424)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~ 172 (424)
....++++|..+.++. |...|.|.+|-..
T Consensus 37 ~~~~~afD~~q~llai-~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAI-GTRTGAIKIYGQP 65 (993)
T ss_pred CCcceeeccccceEEE-EEecccEEEeccc
Confidence 3456788999999999 9999999998654
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.41 E-value=17 Score=34.08 Aligned_cols=102 Identities=6% Similarity=-0.064 Sum_probs=48.6
Q ss_pred CCCCeeEeecCCe---EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEE
Q psy3710 20 QDQGCFACGMEDG---FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICL 96 (424)
Q Consensus 20 ~~g~~la~g~~~~---i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 96 (424)
-+|...+.|+.++ +..||..+.+-......+.... ..+..--++.+.++||... ....+..||.++.+-...-
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~-~~~~~~~~g~IYviGG~~~---~~~~ve~ydp~~~~W~~~~ 392 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRC-NPAVASINNVIYVIGGHSE---TDTTTEYLLPNHDQWQFGP 392 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCc-ccEEEEECCEEEEecCcCC---CCccEEEEeCCCCEEEeCC
Confidence 3566667776433 8888866544332222222221 1222223445555554321 1246778888766543321
Q ss_pred ee--cCCeEEEEecCCceEEEeeccEEEEeec
Q psy3710 97 EF--NAPVKGVRLRRDKIVVVLEGLIKVYTFI 126 (424)
Q Consensus 97 ~~--~~~v~~~~~~~~~~~~~~~~~i~v~~~~ 126 (424)
.. +..-.+++ .-++.+.+..|.+.+||.+
T Consensus 393 ~m~~~r~~~~~~-~~~~~IYv~GG~~e~ydp~ 423 (480)
T PHA02790 393 STYYPHYKSCAL-VFGRRLFLVGRNAEFYCES 423 (480)
T ss_pred CCCCccccceEE-EECCEEEEECCceEEecCC
Confidence 11 11111222 2344444556777888875
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=88.86 E-value=20 Score=33.52 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=55.8
Q ss_pred EEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc------eeeeeecCCCCeEEEEee-------------------
Q psy3710 191 IALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG------LCVLCPNSNNSLLAFPGR------------------- 245 (424)
Q Consensus 191 ~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~------------------- 245 (424)
+...++|.+++... .. ++.+|+ .|+.+..+..+ ..-+...|+|..++.+..
T Consensus 153 ~~~l~nG~ll~~~~--~~-~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ive 228 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NR-LYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVE 228 (477)
T ss_dssp EEE-TTS-EEEEEB--TE-EEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEE
T ss_pred eeEcCCCCEEEecC--Cc-eEEEcC-CCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEE
Confidence 66678888776555 55 888998 46655544422 233455677777776541
Q ss_pred --c-CCeEEEEeCCCCCCCCee----------ec---cCC--CCeEEEEEcCCCCEEEEEeC-CCcEEEEEECCCCceee
Q psy3710 246 --K-SGHVHLVDLADPERPPLD----------IA---AHE--APLSCIALNQTGTRLATASY-KGTLIRVFDTGSGQKLN 306 (424)
Q Consensus 246 --~-dg~i~i~d~~~~~~~~~~----------~~---~~~--~~v~~~~~~~~~~~l~~~~~-d~~~i~iwd~~~~~~~~ 306 (424)
. ...+..||+..--.+... .. ... --++++.+.+....|+..+. -.. |...|.++++..+
T Consensus 229 vd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~-V~~Id~~t~~i~W 307 (477)
T PF05935_consen 229 VDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSA-VIKIDYRTGKIKW 307 (477)
T ss_dssp E-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-E-EEEEE-TTS-EEE
T ss_pred ECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceE-EEEEECCCCcEEE
Confidence 1 113444555432111111 00 000 24789999994444444454 446 8999999998887
Q ss_pred eecc
Q psy3710 307 ELRR 310 (424)
Q Consensus 307 ~~~~ 310 (424)
.+.+
T Consensus 308 ilg~ 311 (477)
T PF05935_consen 308 ILGP 311 (477)
T ss_dssp EES-
T ss_pred EeCC
Confidence 6643
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=88.75 E-value=18 Score=32.60 Aligned_cols=97 Identities=12% Similarity=0.183 Sum_probs=50.8
Q ss_pred CeEEEEEccCCCEEEEEe-----------cCC-cEEEEEECCC--cc--eeeEEecc---eeeeeecCCCCeEEEEeecC
Q psy3710 187 PLSCIALNQTGTRLATAS-----------YKG-TLIRVFDTGS--GQ--KLNELRRG---LCVLCPNSNNSLLAFPGRKS 247 (424)
Q Consensus 187 ~v~~~~~~~~~~~l~~~~-----------~d~-~~i~iwd~~~--~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~d 247 (424)
....|+|.++|+++++-. ..+ . |.+++-.+ ++ ....+... ...+++.+++ +++ +..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~r-I~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV-~~~- 89 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDR-ILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYV-ATP- 89 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCE-EEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEE-eCC-
Confidence 356788888888776642 122 5 66665432 22 12333322 3556777776 444 333
Q ss_pred CeEEEE-eCCCCC----CC---Ceeecc----CCCCeEEEEEcCCCCEEEEEe
Q psy3710 248 GHVHLV-DLADPE----RP---PLDIAA----HEAPLSCIALNQTGTRLATAS 288 (424)
Q Consensus 248 g~i~i~-d~~~~~----~~---~~~~~~----~~~~v~~~~~~~~~~~l~~~~ 288 (424)
..|..+ |..... .. ...+.. +......++|.|||.+.++-+
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 345444 543221 11 111211 234577899999998766554
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=88.48 E-value=12 Score=30.24 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=35.8
Q ss_pred CeEEEeeccCCeEEEEeCCCCC-CCCcccccccCCeEEEEEccCCCEEEEEecC
Q psy3710 154 SLLAFPGRKSGHVHLVDLADPE-RPPLDIAAHEAPLSCIALNQTGTRLATASYK 206 (424)
Q Consensus 154 ~~l~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 206 (424)
..|++ +.....|.+|++.... +....+.. -+.|..+.++..|+++++--.+
T Consensus 29 d~Lfv-a~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFV-AASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEE-EcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEee
Confidence 44544 4666789999998432 23334433 4889999999999999997544
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=88.41 E-value=20 Score=32.74 Aligned_cols=141 Identities=10% Similarity=0.146 Sum_probs=83.3
Q ss_pred ceEEEEeCCcCCCcCCCeEEEEECCCCc-----EEEEEeecCCeEEEEecC-----CceEEEe--eccEEEEeecCCC--
Q psy3710 64 NYLALVGGGTHPKYPNNRVMIWDDLKKQ-----VVICLEFNAPVKGVRLRR-----DKIVVVL--EGLIKVYTFIQCP-- 129 (424)
Q Consensus 64 ~~l~~~~~~~~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~v~~~~~~~-----~~~~~~~--~~~i~v~~~~~~~-- 129 (424)
+.+++.+ ..|.++||+...+. .+.+.+.+.+|..+..-+ +...+|. -..+.+|.+....
T Consensus 38 d~IivGS-------~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 38 DKIIVGS-------YSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT 110 (418)
T ss_pred cEEEEec-------cccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC
Confidence 4555555 46999999986543 444555788998887642 3344444 7888899883221
Q ss_pred ------ceeEEEeeCCCCCeeEEEeecC----C-CCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCC
Q psy3710 130 ------QQLHVFETNPNPKGLCVLCPNS----N-NSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT 198 (424)
Q Consensus 130 ------~~~~~~~~~~~~~~~~~~~~~~----~-~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 198 (424)
-.+..+..|.-......++.-| . ..+|.+ -+.||.+.+|+-+.- .....+.. ---.--+.|.+...
T Consensus 111 ~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcV-QS~DG~L~~feqe~~-~f~~~lp~-~llPgPl~Y~~~tD 187 (418)
T PF14727_consen 111 VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICV-QSMDGSLSFFEQESF-AFSRFLPD-FLLPGPLCYCPRTD 187 (418)
T ss_pred cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEE-EecCceEEEEeCCcE-EEEEEcCC-CCCCcCeEEeecCC
Confidence 1223333333333344444322 2 345555 899999999997752 11111211 11123456777778
Q ss_pred EEEEEecCCcEEEEEEC
Q psy3710 199 RLATASYKGTLIRVFDT 215 (424)
Q Consensus 199 ~l~~~~~d~~~i~iwd~ 215 (424)
.+++++.+.. +..|..
T Consensus 188 sfvt~sss~~-l~~Yky 203 (418)
T PF14727_consen 188 SFVTASSSWT-LECYKY 203 (418)
T ss_pred EEEEecCcee-EEEecH
Confidence 8888888877 777754
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=88.41 E-value=19 Score=32.47 Aligned_cols=175 Identities=12% Similarity=0.113 Sum_probs=90.6
Q ss_pred CCCeEEEeeccCCeEEEEeCCCCCCCCccccccc-CCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEeccee-
Q psy3710 152 NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHE-APLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLC- 229 (424)
Q Consensus 152 ~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~- 229 (424)
+|+ +++ ++.+|.+..+|..++ .......... -.+..-....++ .+...+.++. +...|..+++..-.......
T Consensus 111 ~G~-i~~-g~~~g~~y~ld~~~G-~~~W~~~~~~~~~~~~~~v~~~~-~v~~~s~~g~-~~al~~~tG~~~W~~~~~~~~ 185 (370)
T COG1520 111 DGK-IYV-GSWDGKLYALDASTG-TLVWSRNVGGSPYYASPPVVGDG-TVYVGTDDGH-LYALNADTGTLKWTYETPAPL 185 (370)
T ss_pred CCe-EEE-ecccceEEEEECCCC-cEEEEEecCCCeEEecCcEEcCc-EEEEecCCCe-EEEEEccCCcEEEEEecCCcc
Confidence 566 454 888998888888765 4444333332 111111122233 3344446677 88888887877665443221
Q ss_pred --eeeecC-CCCeEEEEeec--CCeEEEEeCCCCCCCCeee----ccCCCC--eEEEEEcC--CCCEEEEEeCCCcEEEE
Q psy3710 230 --VLCPNS-NNSLLAFPGRK--SGHVHLVDLADPERPPLDI----AAHEAP--LSCIALNQ--TGTRLATASYKGTLIRV 296 (424)
Q Consensus 230 --~~~~~~-~~~~~~~~~~~--dg~i~i~d~~~~~~~~~~~----~~~~~~--v~~~~~~~--~~~~l~~~~~d~~~i~i 296 (424)
.....| ...-.++.+.. ++.+.-+|..++...-... .+.... ...+..-+ .+.-+..++.++. +..
T Consensus 186 ~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~-~~~ 264 (370)
T COG1520 186 SLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGK-LLC 264 (370)
T ss_pred ccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCe-EEE
Confidence 000111 11222333544 5677777777665322210 111110 00010000 1223466777888 899
Q ss_pred EECCCCceeeeeccC----CcEEEEEe---CCCcEEEEEcccc
Q psy3710 297 FDTGSGQKLNELRRD----SSYLCVSS---DHGTVHVFSVDEA 332 (424)
Q Consensus 297 wd~~~~~~~~~~~~~----~~~l~~~~---~d~~i~iw~~~~~ 332 (424)
.|..+++.+..+... +.-+.+.. .||.+.++.....
T Consensus 265 l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~ 307 (370)
T COG1520 265 LDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDND 307 (370)
T ss_pred EEcCCCceEEEEecccEeccCCeeEEeecCCCccEEEEEeccc
Confidence 999999999988762 33333222 4889988876553
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=88.39 E-value=19 Score=32.64 Aligned_cols=143 Identities=7% Similarity=-0.031 Sum_probs=82.0
Q ss_pred ceEEEEECCCCCeeEeecCCe-EEEEeCCcCcc--cccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECC
Q psy3710 12 GLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKE--KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL 88 (424)
Q Consensus 12 ~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~ 88 (424)
....+..++||.++++|.... ++-||- ++. ..........+..+.+.+++..+++.. .+.+ ++...
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~--------~G~l-~~S~d 308 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLTR--------GGGL-YVSKG 308 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEeC--------CceE-EEecC
Confidence 345567789999999988776 555653 222 111222245677888888877765554 3443 34444
Q ss_pred CCc-----EEEEEee---cCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEee-CCCCCeeEEEeecCCCCeEE
Q psy3710 89 KKQ-----VVICLEF---NAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFET-NPNPKGLCVLCPNSNNSLLA 157 (424)
Q Consensus 89 ~~~-----~~~~~~~---~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 157 (424)
.++ ....... ...+.++.+.+++..+++ .|.+..-. ..++.....+. ..-+.....+.|.++++.++
T Consensus 309 ~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~--D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~ 386 (398)
T PLN00033 309 TGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST--DGGKSWKRDKGADNIAANLYSVKFFDDKKGFV 386 (398)
T ss_pred CCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC--CCCcceeEccccCCCCcceeEEEEcCCCceEE
Confidence 443 2222222 234888999988876666 55544443 24444333331 22223466777777777666
Q ss_pred EeeccCCeEEEE
Q psy3710 158 FPGRKSGHVHLV 169 (424)
Q Consensus 158 ~~~~~dg~i~i~ 169 (424)
+ +.+|.|.-|
T Consensus 387 ~--G~~G~il~~ 396 (398)
T PLN00033 387 L--GNDGVLLRY 396 (398)
T ss_pred E--eCCcEEEEe
Confidence 4 677877654
|
|
| >KOG1520|consensus | Back alignment and domain information |
|---|
Probab=88.16 E-value=15 Score=32.51 Aligned_cols=101 Identities=16% Similarity=0.084 Sum_probs=56.5
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc--------eeeeeecCCC--------------CeE--E
Q psy3710 186 APLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG--------LCVLCPNSNN--------------SLL--A 241 (424)
Q Consensus 186 ~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~--------------~~~--~ 241 (424)
+.-..++|...+.-|+.+..--. +..-+...++.. .+... ...+.+.+.+ ..+ +
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~a~-~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~ 192 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGLAE-LLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAA 192 (376)
T ss_pred CCcceEEeccCCCeEEEEeccee-eEEECCCCCcce-eccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEee
Confidence 55678888888866666655544 555555544311 11100 1112222211 112 2
Q ss_pred EEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCC
Q psy3710 242 FPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK 290 (424)
Q Consensus 242 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 290 (424)
+.+..+|.+.-||..+... +.+...-.-.+.++.|||+.+++.+-.-
T Consensus 193 l~g~~~GRl~~YD~~tK~~--~VLld~L~F~NGlaLS~d~sfvl~~Et~ 239 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDPSTKVT--KVLLDGLYFPNGLALSPDGSFVLVAETT 239 (376)
T ss_pred ecCCCccceEEecCcccch--hhhhhcccccccccCCCCCCEEEEEeec
Confidence 2355778888888877542 2222334456788999999988877543
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.91 E-value=24 Score=33.16 Aligned_cols=183 Identities=13% Similarity=-0.044 Sum_probs=77.3
Q ss_pred CCCeeEeecCC------eEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEE
Q psy3710 21 DQGCFACGMED------GFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVI 94 (424)
Q Consensus 21 ~g~~la~g~~~------~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 94 (424)
++..+++|+.+ .+..||..+.+.......+...... ....-++.+.++||.. ....+..||..+++-..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v~~~~~iYviGG~~----~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGVPANNKLYVVGGLP----NPTSVERWFHGDAAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEEEECCEEEEECCcC----CCCceEEEECCCCeEEE
Confidence 34555666543 2667877665443222221111111 1122345566666532 12567888876654332
Q ss_pred EEeec--CCeEEEEecCCceEEEe-----eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEE
Q psy3710 95 CLEFN--APVKGVRLRRDKIVVVL-----EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVH 167 (424)
Q Consensus 95 ~~~~~--~~v~~~~~~~~~~~~~~-----~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~ 167 (424)
.-..+ ..-.+++...+..++.. ...+..||.+ +.+- ........+..-.+.+ .-+++..+. | |.+.
T Consensus 346 ~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~-~~~W-~~~~~m~~~r~~~~~~-~~~~~IYv~-G---G~~e 418 (480)
T PHA02790 346 MPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPN-HDQW-QFGPSTYYPHYKSCAL-VFGRRLFLV-G---RNAE 418 (480)
T ss_pred CCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCC-CCEE-EeCCCCCCccccceEE-EECCEEEEE-C---CceE
Confidence 21122 11123333334444432 1346677764 2222 1111111111111111 224555554 6 3567
Q ss_pred EEeCCCCCCC-CcccccccCCeEEEEEccCCCEEEEEecC-----CcEEEEEECCCc
Q psy3710 168 LVDLADPERP-PLDIAAHEAPLSCIALNQTGTRLATASYK-----GTLIRVFDTGSG 218 (424)
Q Consensus 168 i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~~i~iwd~~~~ 218 (424)
+||.++..=. +..+....... +++. -+++..+.|+.+ .. +..||..++
T Consensus 419 ~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~-ve~Yd~~~~ 472 (480)
T PHA02790 419 FYCESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDT-IEVYNNRTY 472 (480)
T ss_pred EecCCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccce-EEEEECCCC
Confidence 8888764110 11111111111 2222 256677777654 23 566666544
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=87.58 E-value=22 Score=32.41 Aligned_cols=136 Identities=11% Similarity=0.057 Sum_probs=73.3
Q ss_pred CCeeEeecCCe-EEEEeCCcCccc-----ccccccCCCeeeEEEec-----cCceEEEEeCCcCCCcCCCeEEEEECCC-
Q psy3710 22 QGCFACGMEDG-FRIYNCDPLKEK-----ERQDFTDGGLGHVEMLF-----RCNYLALVGGGTHPKYPNNRVMIWDDLK- 89 (424)
Q Consensus 22 g~~la~g~~~~-i~iw~~~~~~~~-----~~~~~~~~~i~~~~~~~-----~~~~l~~~~~~~~~~~~d~~i~iwd~~~- 89 (424)
...+++|+-.| ++||+....... ...+ -..+|-.++.-. ....||+.- .+.+.||.+..
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLh--------P~kl~vY~v~~~ 107 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLH--------PRKLSVYSVSLV 107 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEec--------CCEEEEEEEEec
Confidence 36888999888 999997543321 1111 245665555432 223455443 58888888631
Q ss_pred -Cc-----E---EEEEee--cCCeEEEEecC----C-ceEEE--e-eccEEEEeecCCCceeEEEeeCCCCCeeEEEeec
Q psy3710 90 -KQ-----V---VICLEF--NAPVKGVRLRR----D-KIVVV--L-EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPN 150 (424)
Q Consensus 90 -~~-----~---~~~~~~--~~~v~~~~~~~----~-~~~~~--~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (424)
|. . ...++| +.....+..-| . ...++ + ||.+.+|+-+ .......+...--|.. +.+.
T Consensus 108 ~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe-~~~f~~~lp~~llPgP---l~Y~ 183 (418)
T PF14727_consen 108 DGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE-SFAFSRFLPDFLLPGP---LCYC 183 (418)
T ss_pred CCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCC-cEEEEEEcCCCCCCcC---eEEe
Confidence 11 1 112223 44444554432 1 23333 3 9999999953 2222233333222222 3445
Q ss_pred CCCCeEEEeeccCCeEEEEeC
Q psy3710 151 SNNSLLAFPGRKSGHVHLVDL 171 (424)
Q Consensus 151 ~~~~~l~~~~~~dg~i~i~d~ 171 (424)
+....+++ ++.+..+.-|..
T Consensus 184 ~~tDsfvt-~sss~~l~~Yky 203 (418)
T PF14727_consen 184 PRTDSFVT-ASSSWTLECYKY 203 (418)
T ss_pred ecCCEEEE-ecCceeEEEecH
Confidence 55666776 777778888865
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=87.31 E-value=3.5 Score=39.41 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=44.2
Q ss_pred CCCeEEEeeccCCeEEEEeCCC---CCCCCc--------------cc--------ccccCCeEEEEEcc----CCCEEEE
Q psy3710 152 NNSLLAFPGRKSGHVHLVDLAD---PERPPL--------------DI--------AAHEAPLSCIALNQ----TGTRLAT 202 (424)
Q Consensus 152 ~~~~l~~~~~~dg~i~i~d~~~---~~~~~~--------------~~--------~~~~~~v~~~~~~~----~~~~l~~ 202 (424)
+...+++ +..||.+....... ...... .+ .........+++++ +..++++
T Consensus 157 ~~~~l~v-~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 157 SEANLVV-SLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp SSSBEEE-EESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred CCCEEEE-EECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 5556676 78888888877664 111000 00 01123455666666 6789999
Q ss_pred EecCCcEEEEEECCCcceeeEEe
Q psy3710 203 ASYKGTLIRVFDTGSGQKLNELR 225 (424)
Q Consensus 203 ~~~d~~~i~iwd~~~~~~~~~~~ 225 (424)
.+.|+. +|+||+.+++++....
T Consensus 236 l~~D~~-LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHT-LRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSE-EEEEETTTTCEEEEEE
T ss_pred EeCCCe-EEEEECCCCeEEEEec
Confidence 999999 9999999999976653
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.16 E-value=23 Score=32.11 Aligned_cols=133 Identities=17% Similarity=0.110 Sum_probs=77.4
Q ss_pred CCCEEEEEecCCcEEEEEECCCc----ceeeEEecceeeeeecCCCCe-------EEEEeecCCeEEEEeCCCC------
Q psy3710 196 TGTRLATASYKGTLIRVFDTGSG----QKLNELRRGLCVLCPNSNNSL-------LAFPGRKSGHVHLVDLADP------ 258 (424)
Q Consensus 196 ~~~~l~~~~~d~~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~dg~i~i~d~~~~------ 258 (424)
....++.+..+|. +.+....-. .+-.+|+.+....+..+.++. ++.+++.+.....+|....
T Consensus 126 gqp~~alglsngq-v~v~qp~~s~t~p~pg~~Fp~g~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~L~g 204 (733)
T COG4590 126 GQPWFALGLSNGQ-VAVVQPQLSHTMPTPGREFPPGLEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQILRG 204 (733)
T ss_pred CCceEEEeccCCe-EEEEeccccccCCCCCccCCCCCCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhhhhc
Confidence 4457888888998 888764311 123344444444444444332 3444555555555554432
Q ss_pred -----CCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCce----eeeec---------------cCCcE
Q psy3710 259 -----ERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK----LNELR---------------RDSSY 314 (424)
Q Consensus 259 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~----~~~~~---------------~~~~~ 314 (424)
++.+..+..--..+..+-..|||+.+..-+. .. +.++++.+... +..-+ ..|..
T Consensus 205 ~~t~q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~-~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~S 282 (733)
T COG4590 205 DRTTQQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SE-LVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFS 282 (733)
T ss_pred ccCchhhhhhhcCCCccchHhhEECCCCCEEEEecC-Ce-EEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCcee
Confidence 2222334445567778889999998888776 34 78887765322 22222 24667
Q ss_pred EEEEeCCCcEEEE-Eccc
Q psy3710 315 LCVSSDHGTVHVF-SVDE 331 (424)
Q Consensus 315 l~~~~~d~~i~iw-~~~~ 331 (424)
+.+++.||-|.-| |+..
T Consensus 283 LLv~~~dG~vsQWFdvr~ 300 (733)
T COG4590 283 LLVVHEDGLVSQWFDVRR 300 (733)
T ss_pred EEEEcCCCceeeeeeeec
Confidence 8888899988766 4444
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=86.99 E-value=3.7 Score=39.23 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=28.3
Q ss_pred CCeEEEEEcC----CCCEEEEEeCCCcEEEEEECCCCceeee
Q psy3710 270 APLSCIALNQ----TGTRLATASYKGTLIRVFDTGSGQKLNE 307 (424)
Q Consensus 270 ~~v~~~~~~~----~~~~l~~~~~d~~~i~iwd~~~~~~~~~ 307 (424)
.....+++++ +..+|++.+.|+. +|+||+.+++++.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~-LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHT-LRIWSLETGQCLAT 255 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSE-EEEEETTTTCEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCe-EEEEECCCCeEEEE
Confidence 4456667766 6789999999999 99999999999554
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=85.97 E-value=36 Score=33.29 Aligned_cols=31 Identities=10% Similarity=0.337 Sum_probs=22.4
Q ss_pred CCCCeEEEEEcCCC---C---EEEEEeCCCcEEEEEEC
Q psy3710 268 HEAPLSCIALNQTG---T---RLATASYKGTLIRVFDT 299 (424)
Q Consensus 268 ~~~~v~~~~~~~~~---~---~l~~~~~d~~~i~iwd~ 299 (424)
|...|.+|+|-++. . .|++++-.|. +.+|++
T Consensus 209 ~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~-v~~~~I 245 (717)
T PF08728_consen 209 HSHNIPNVSFLDDDLDPNGHVKVVATDISGE-VWTFKI 245 (717)
T ss_pred cccCCCeeEeecCCCCCccceEEEEEeccCc-EEEEEE
Confidence 55667888886632 2 7778888888 777776
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=85.40 E-value=4.4 Score=22.16 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=16.4
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCC
Q psy3710 267 AHEAPLSCIALNQTGTRLATASYK 290 (424)
Q Consensus 267 ~~~~~v~~~~~~~~~~~l~~~~~d 290 (424)
.....-....|+|||+.|+.++..
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEEC
T ss_pred cCCccccCEEEecCCCEEEEEecC
Confidence 345567788999999888776654
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=84.72 E-value=24 Score=30.22 Aligned_cols=200 Identities=16% Similarity=0.162 Sum_probs=107.3
Q ss_pred EEEEECCCCCeeEeecCCe-EEEEeCCcC------cccc-cccc-----cCCCeeeEEEeccCce------------EEE
Q psy3710 14 LYAGFNQDQGCFACGMEDG-FRIYNCDPL------KEKE-RQDF-----TDGGLGHVEMLFRCNY------------LAL 68 (424)
Q Consensus 14 ~~~~~s~~g~~la~g~~~~-i~iw~~~~~------~~~~-~~~~-----~~~~i~~~~~~~~~~~------------l~~ 68 (424)
..|+|+|.+.+-++....+ ..+||.++. +.+. .... ..+..+.+.|...... +++
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 4689999987666655555 999998622 1111 1110 1223444555433332 344
Q ss_pred EeCCcCCCcCCCeEEEEECCCCcE-----EEEEe--ecCCeE-EEEecCC--c-eEEEe---eccEEEEeecCCCceeEE
Q psy3710 69 VGGGTHPKYPNNRVMIWDDLKKQV-----VICLE--FNAPVK-GVRLRRD--K-IVVVL---EGLIKVYTFIQCPQQLHV 134 (424)
Q Consensus 69 ~~~~~~~~~~d~~i~iwd~~~~~~-----~~~~~--~~~~v~-~~~~~~~--~-~~~~~---~~~i~v~~~~~~~~~~~~ 134 (424)
++ .|++|.-|...-+.. ...+. ....|+ .+++... + .+.+. .++|.|||-. .+++..
T Consensus 106 ~t-------EdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~--f~~~~~ 176 (336)
T TIGR03118 106 VT-------EDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS--FRPPPL 176 (336)
T ss_pred Ee-------CCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc--cccccC
Confidence 44 589999998543222 11222 123343 3555422 2 23333 7899999853 222211
Q ss_pred ---E-----eeCCCCCeeEEE---------eecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccc--cccCCeEEEEEcc
Q psy3710 135 ---F-----ETNPNPKGLCVL---------CPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA--AHEAPLSCIALNQ 195 (424)
Q Consensus 135 ---~-----~~~~~~~~~~~~---------~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~ 195 (424)
+ .....|..+..+ .-.++.+.=+. |.--|.|-+||+.. ..++++. +.-..-..|+..|
T Consensus 177 ~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~-G~G~G~VdvFd~~G--~l~~r~as~g~LNaPWG~a~AP 253 (336)
T TIGR03118 177 PGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVA-GAGLGYVNVFTLNG--QLLRRVASSGRLNAPWGLAIAP 253 (336)
T ss_pred CCCccCCCCCCCCCCcceEEECCeEEEEEEecCCccccccc-CCCcceEEEEcCCC--cEEEEeccCCcccCCceeeeCh
Confidence 1 111112222211 11222222222 55568999999886 4555442 3334456777766
Q ss_pred ------CCCEEEEEecCCcEEEEEECCCcceeeEEec
Q psy3710 196 ------TGTRLATASYKGTLIRVFDTGSGQKLNELRR 226 (424)
Q Consensus 196 ------~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~ 226 (424)
.|.+|+---.||+ |..+|..+++.+-.+..
T Consensus 254 a~FG~~sg~lLVGNFGDG~-InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 254 ESFGSLSGALLVGNFGDGT-INAYDPQSGAQLGQLLD 289 (336)
T ss_pred hhhCCCCCCeEEeecCCce-eEEecCCCCceeeeecC
Confidence 4567776667999 99999999988877764
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=84.64 E-value=8.5 Score=30.17 Aligned_cols=32 Identities=16% Similarity=0.311 Sum_probs=25.9
Q ss_pred CCeEEEEEccCC------CEEEEEecCCcEEEEEECCCc
Q psy3710 186 APLSCIALNQTG------TRLATASYKGTLIRVFDTGSG 218 (424)
Q Consensus 186 ~~v~~~~~~~~~------~~l~~~~~d~~~i~iwd~~~~ 218 (424)
..+.+++|||.| -.|++...++. |.+|.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~-l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGR-LSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCe-EEEEecCCC
Confidence 479999999954 36888899999 999987643
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=84.29 E-value=4.5 Score=22.42 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=11.8
Q ss_pred CCCEEEEEeC-CCcEEEEEECCCCceeee
Q psy3710 280 TGTRLATASY-KGTLIRVFDTGSGQKLNE 307 (424)
Q Consensus 280 ~~~~l~~~~~-d~~~i~iwd~~~~~~~~~ 307 (424)
++++|+++.. ++. |.++|..+++.+..
T Consensus 2 d~~~lyv~~~~~~~-v~~id~~~~~~~~~ 29 (42)
T TIGR02276 2 DGTKLYVTNSGSNT-VSVIDTATNKVIAT 29 (42)
T ss_pred CCCEEEEEeCCCCE-EEEEECCCCeEEEE
Confidence 4444444333 233 55555554444443
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=84.07 E-value=3 Score=21.66 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=17.3
Q ss_pred EEEEEeCCCcEEEEEECCCCceeeee
Q psy3710 283 RLATASYKGTLIRVFDTGSGQKLNEL 308 (424)
Q Consensus 283 ~l~~~~~d~~~i~iwd~~~~~~~~~~ 308 (424)
.++.++.++. +..+|.++|+.+.++
T Consensus 8 ~v~~~~~~g~-l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGT-LYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCE-EEEEEcccCcEEEEc
Confidence 5666677777 777777777766553
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=84.03 E-value=50 Score=33.25 Aligned_cols=108 Identities=14% Similarity=0.108 Sum_probs=72.4
Q ss_pred ceEEEEECCCC-CeeEeecCCe-EEEEeCCcCcccc-----cccccCC----------CeeeEEEeccCceEEEEeCCcC
Q psy3710 12 GLLYAGFNQDQ-GCFACGMEDG-FRIYNCDPLKEKE-----RQDFTDG----------GLGHVEMLFRCNYLALVGGGTH 74 (424)
Q Consensus 12 ~V~~~~~s~~g-~~la~g~~~~-i~iw~~~~~~~~~-----~~~~~~~----------~i~~~~~~~~~~~l~~~~~~~~ 74 (424)
+.-.++|+|.. +.||+-...| -.||++....... ......| .-..+.|..+.+.++++.
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~---- 222 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN---- 222 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc----
Confidence 45678999864 6888888888 9999992111110 0001112 233677888888888887
Q ss_pred CCcCCCeEEEEECCCCcEEEEE---eecCCeEEEEecCC---ceEEEeeccEEEEeecC
Q psy3710 75 PKYPNNRVMIWDDLKKQVVICL---EFNAPVKGVRLRRD---KIVVVLEGLIKVYTFIQ 127 (424)
Q Consensus 75 ~~~~d~~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~---~~~~~~~~~i~v~~~~~ 127 (424)
...+.++|+++......+ .....|..+.-++. ..++.+...|...++..
T Consensus 223 ----r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 223 ----RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred ----CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 578999999877663312 24577888888877 45555688888888864
|
These proteins are found in fungi. |
| >KOG1898|consensus | Back alignment and domain information |
|---|
Probab=83.90 E-value=53 Score=33.43 Aligned_cols=177 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred EEEEeCCcCcccccccccCC----CeeeEEEeccCce-EEEEeCCcC-----CCcCCCeEEEEECCCCcEEEEEee----
Q psy3710 33 FRIYNCDPLKEKERQDFTDG----GLGHVEMLFRCNY-LALVGGGTH-----PKYPNNRVMIWDDLKKQVVICLEF---- 98 (424)
Q Consensus 33 i~iw~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~-l~~~~~~~~-----~~~~d~~i~iwd~~~~~~~~~~~~---- 98 (424)
|++.|..+++.+.......+ .+....|+..... ++.++.... ..-.++.++.|+.-.......+-|
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Q ss_pred cCCeEEEEecCCceEEEeeccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCC
Q psy3710 99 NAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPP 178 (424)
Q Consensus 99 ~~~v~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~ 178 (424)
++.|.+++-..+..+.+....+++|++. ..++++..+...-+..+..+.+ .+..+++ |...-.+.++..+...+..
T Consensus 935 ~~~v~Ai~~f~~~~LagvG~~l~~YdlG-~K~lLRk~e~k~~p~~Is~iqt--~~~RI~V-gD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen 935 PGPVGAICPFQGRVLAGVGRFLRLYDLG-KKKLLRKCELKFIPNRISSIQT--YGARIVV-GDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred CccceEEeccCCEEEEecccEEEEeeCC-hHHHHhhhhhccCceEEEEEee--cceEEEE-eeccceEEEEEEecCCCeE
Q ss_pred cccccc--cCCeEEEEEccCCCEEEEEecCCcEEEEEEC
Q psy3710 179 LDIAAH--EAPLSCIALNQTGTRLATASYKGTLIRVFDT 215 (424)
Q Consensus 179 ~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~ 215 (424)
..+-.. ...|+++.+- |-..++.+..-|. +.+..+
T Consensus 1011 ~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGN-i~~vR~ 1047 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALELL-DYDTVAGADRFGN-IAVVRI 1047 (1205)
T ss_pred EEEeCCCccceeeEEEEe-cCCceeeccccCc-EEEEEC
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=83.79 E-value=36 Score=31.36 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=26.6
Q ss_pred CCceEEEEecCCCeEEEEeccCcEEEEEecCCcce
Q psy3710 365 DPPCICAFGADSNSIIVICADGSYYKFMFNSKGEC 399 (424)
Q Consensus 365 ~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~ 399 (424)
..+..++..+..+.|++.+.+|.|.+|++..+++.
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~~~~ 224 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPGGST 224 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS-EE
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCCCCc
Confidence 34788899888899999999999999999865443
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >KOG1520|consensus | Back alignment and domain information |
|---|
Probab=83.59 E-value=15 Score=32.52 Aligned_cols=103 Identities=13% Similarity=0.107 Sum_probs=61.5
Q ss_pred CCeEEEEecCCc-eEEEeeccEEEEeecCCCceeEEEeeCCCCCe---eEEEeecCCCCeEE----------------Ee
Q psy3710 100 APVKGVRLRRDK-IVVVLEGLIKVYTFIQCPQQLHVFETNPNPKG---LCVLCPNSNNSLLA----------------FP 159 (424)
Q Consensus 100 ~~v~~~~~~~~~-~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~----------------~~ 159 (424)
+....++|...+ .++++|...-+|.+...+.....+..+..... ...+..+++|.... ..
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~ 194 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALE 194 (376)
T ss_pred CCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeec
Confidence 567789998877 78888998888888655554333322221111 11222333222221 12
Q ss_pred eccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEe
Q psy3710 160 GRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS 204 (424)
Q Consensus 160 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 204 (424)
+..+|.+.-||..+ +..+.+...-.-.+.++.|||+.+++.+-
T Consensus 195 g~~~GRl~~YD~~t--K~~~VLld~L~F~NGlaLS~d~sfvl~~E 237 (376)
T KOG1520|consen 195 GDPTGRLFRYDPST--KVTKVLLDGLYFPNGLALSPDGSFVLVAE 237 (376)
T ss_pred CCCccceEEecCcc--cchhhhhhcccccccccCCCCCCEEEEEe
Confidence 44577888888776 44444444445567889999998887764
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=83.21 E-value=32 Score=30.43 Aligned_cols=146 Identities=11% Similarity=0.056 Sum_probs=74.0
Q ss_pred CeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCC-CCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcce
Q psy3710 142 KGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER-PPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK 220 (424)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~ 220 (424)
..+..+...+++.++++ +..|.+..- .+.+.+ -......-...++++.+.++++.++.+ ..|. +++=....+..
T Consensus 173 g~~~~i~~~~~g~~v~~--g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~-~~~~s~d~G~s 247 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAV--SSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQ-IRFNDPDDLES 247 (334)
T ss_pred ceEEEEEECCCCeEEEE--eCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCE-EEEccCCCCCc
Confidence 34667788888877765 445655432 111111 111112334678899999988776654 4565 44322333332
Q ss_pred eeEEe-------cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeee---ccCCCCeEEEEEcCCCCEEEEEeCC
Q psy3710 221 LNELR-------RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDI---AAHEAPLSCIALNQTGTRLATASYK 290 (424)
Q Consensus 221 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d 290 (424)
-.... .....+.+.+++.. ++ .+.+|.+.. ....++. -... ..-....+.+.|..+++.+ ..+..
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~-~~-~G~~G~v~~-S~d~G~t-W~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~ 322 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEI-WA-GGGNGTLLV-SKDGGKT-WEKDPVGEEVPSNFYKIVFLDPEKGF-VLGQR 322 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCE-EE-EcCCCeEEE-eCCCCCC-CeECCcCCCCCcceEEEEEeCCCceE-EECCC
Confidence 22111 12345566676553 33 455666553 3333321 1111 1222357777877665554 45666
Q ss_pred CcEEEEEE
Q psy3710 291 GTLIRVFD 298 (424)
Q Consensus 291 ~~~i~iwd 298 (424)
|. |..|+
T Consensus 323 G~-il~~~ 329 (334)
T PRK13684 323 GV-LLRYV 329 (334)
T ss_pred ce-EEEec
Confidence 66 65554
|
|
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=82.88 E-value=4.6 Score=22.06 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=18.5
Q ss_pred EEEEeCCCcEEEEEECCCCceeeeecc
Q psy3710 284 LATASYKGTLIRVFDTGSGQKLNELRR 310 (424)
Q Consensus 284 l~~~~~d~~~i~iwd~~~~~~~~~~~~ 310 (424)
++.++.+|. |.-.|.++|+.+..+..
T Consensus 3 v~~~~~~g~-l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 3 VYVGTPDGY-LYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEETTTSE-EEEEETTTTSEEEEEES
T ss_pred EEEeCCCCE-EEEEECCCCCEEEeeeC
Confidence 445577777 88888888877776654
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.59 E-value=37 Score=30.60 Aligned_cols=175 Identities=12% Similarity=0.143 Sum_probs=92.7
Q ss_pred cEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEcc--C
Q psy3710 119 LIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ--T 196 (424)
Q Consensus 119 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~ 196 (424)
.+.++| .....+..+.+-.....+.++.|..|--++++ =-...-+.+.|+.+.+ ..+.+..-+-+-.+--.+| +
T Consensus 407 ~vYilD--e~lnvvGkltGl~~gERIYAvRf~gdv~yiVT-frqtDPlfviDlsNPe-nPkvlGeLKIPGfS~YLHpige 482 (603)
T COG4880 407 AVYILD--ENLNVVGKLTGLAPGERIYAVRFVGDVLYIVT-FRQTDPLFVIDLSNPE-NPKVLGELKIPGFSEYLHPIGE 482 (603)
T ss_pred eeEEEc--CCCcEEEEEeccCCCceEEEEEEeCceEEEEE-EeccCceEEEEcCCCC-CCceeEEEecCCchhhccccCC
Confidence 344444 34556666766666667888888877777776 5555667888998763 3333322222222333455 4
Q ss_pred CCEEEEEecCCc-EEEEEECCCcce---eeEEe---------cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCe
Q psy3710 197 GTRLATASYKGT-LIRVFDTGSGQK---LNELR---------RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL 263 (424)
Q Consensus 197 ~~~l~~~~~d~~-~i~iwd~~~~~~---~~~~~---------~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~ 263 (424)
+..|-.|-.+|. .|.++|+.+... +..+. .....+.+.+..+.++.-+...|.|..+. .+.+ ..
T Consensus 483 n~~lGvG~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~gyif~ie--dg~k-l~ 559 (603)
T COG4880 483 NRLLGVGAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGGYIFFIE--DGSK-LR 559 (603)
T ss_pred CcEEEeecccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEecccCccEEEEEe--cCce-ee
Confidence 456666666665 256788765422 22221 11344556666666666666666644443 3221 22
Q ss_pred eeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCce
Q psy3710 264 DIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK 304 (424)
Q Consensus 264 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~ 304 (424)
.-..|+..+...-|..| +|..-+... +.+.|-.+.+.
T Consensus 560 k~~e~k~na~RA~fi~d--ylY~vg~~e--v~~ldenswe~ 596 (603)
T COG4880 560 KRAERKLNADRAFFIKD--YLYLVGGNE--VWKLDENSWEV 596 (603)
T ss_pred ehhhhcccceeeEEecc--eEEEeccce--eEEeccchHhh
Confidence 22245555555555444 444444333 55555554443
|
|
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=81.15 E-value=64 Score=32.43 Aligned_cols=75 Identities=16% Similarity=0.265 Sum_probs=47.2
Q ss_pred CCcEEEEEeCCCcEEEEEcccccccccc-ccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEE
Q psy3710 311 DSSYLCVSSDHGTVHVFSVDEAQKINKQ-SSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYY 389 (424)
Q Consensus 311 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~ 389 (424)
-+.+++..-.||+|.++|-.+.+.+... ................+.+ ....+...++|||.+.-++.-..+|.+.
T Consensus 270 ~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~f----p~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 270 LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHF----PCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred cCcEEEEEEcCCeEEEEecCcchhhcccccccCCcccccccccccccc----ccCCCCceEEECcccceEEEEecCCCce
Confidence 3567888899999999999998766544 0000000001111122222 1112566789999999999999999966
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=80.99 E-value=42 Score=30.22 Aligned_cols=143 Identities=13% Similarity=0.130 Sum_probs=73.5
Q ss_pred CCeEEEEECCCCcEEEEEeecC--CeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCC-CCeeEEEeecCCC
Q psy3710 79 NNRVMIWDDLKKQVVICLEFNA--PVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPN-PKGLCVLCPNSNN 153 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 153 (424)
++.+...|..+|+.+....... .+..-.+-.++..... ++.+...+.. ++........... ...+..-....++
T Consensus 120 ~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~-tG~~~W~~~~~~~~~~~~~~~~~~~~~ 198 (370)
T COG1520 120 DGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNAD-TGTLKWTYETPAPLSLSIYGSPAIASG 198 (370)
T ss_pred cceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEcc-CCcEEEEEecCCccccccccCceeecc
Confidence 6789999998999999888555 2222233344444433 5777777764 5665555443221 1111110111223
Q ss_pred CeEEEeecc--CCeEEEEeCCCCCCCCcccc-----cccCCeEEEEEcc-----CCCEEEEEecCCcEEEEEECCCccee
Q psy3710 154 SLLAFPGRK--SGHVHLVDLADPERPPLDIA-----AHEAPLSCIALNQ-----TGTRLATASYKGTLIRVFDTGSGQKL 221 (424)
Q Consensus 154 ~~l~~~~~~--dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~-----~~~~l~~~~~d~~~i~iwd~~~~~~~ 221 (424)
.+.. +.. ++.+.-.|..++ ......+ +... +....... .+..+..++.++. +...|..+++.+
T Consensus 199 -~vy~-~~~~~~~~~~a~~~~~G-~~~w~~~~~~~~~~~~-~~~~~~~~~~~v~v~~~~~~~~~~g~-~~~l~~~~G~~~ 273 (370)
T COG1520 199 -TVYV-GSDGYDGILYALNAEDG-TLKWSQKVSQTIGRTA-ISTTPAVDGGPVYVDGGVYAGSYGGK-LLCLDADTGELI 273 (370)
T ss_pred -eEEE-ecCCCcceEEEEEccCC-cEeeeeeeecccCccc-ccccccccCceEEECCcEEEEecCCe-EEEEEcCCCceE
Confidence 3333 444 555666666654 2222211 1110 00000111 1123456677787 888899999888
Q ss_pred eEEecc
Q psy3710 222 NELRRG 227 (424)
Q Consensus 222 ~~~~~~ 227 (424)
-.++.+
T Consensus 274 W~~~~~ 279 (370)
T COG1520 274 WSFPAG 279 (370)
T ss_pred EEEecc
Confidence 887764
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=80.92 E-value=60 Score=31.99 Aligned_cols=135 Identities=10% Similarity=0.076 Sum_probs=68.7
Q ss_pred EEEECCCCCeeEeecCCe-----EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEEC--
Q psy3710 15 YAGFNQDQGCFACGMEDG-----FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDD-- 87 (424)
Q Consensus 15 ~~~~s~~g~~la~g~~~~-----i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~-- 87 (424)
.+.|-.|.++.+++.... +++|.-+ ++.-...+...|.-..++|-|+|..+++.+.+.. .....|..+..
T Consensus 206 ~i~wrgD~~y~~v~r~Ee~prra~rvysre-g~lds~sep~~g~e~~LSWkpqgS~~ati~td~~--~~S~~ViFfErNG 282 (1243)
T COG5290 206 IIFWRGDTEYNLVGRSEERPRRAFRVYSRE-GQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGC--STSESVIFFERNG 282 (1243)
T ss_pred EEEEccCcceeeecchhcccccceeeeccc-cccccccCCcccchhccccccCCceeeeeccCCC--CCcceEEEEccCC
Confidence 355666666666654222 6666522 2221112222444455899999999999883210 01234555542
Q ss_pred -CCCcEEEEEeecCCeEEEEecCCceEEE--eeccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCe
Q psy3710 88 -LKKQVVICLEFNAPVKGVRLRRDKIVVV--LEGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSL 155 (424)
Q Consensus 88 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (424)
+.|+.-........+...+|+-....++ ..+.+++|... +.. .-++......++.-+.|+|....
T Consensus 283 LrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttk-Nyh--WYLK~e~~ip~~s~vkwhpe~~n 350 (1243)
T COG5290 283 LRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTK-NYH--WYLKVERQIPGISYVKWHPEEKN 350 (1243)
T ss_pred cccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEcc-ceE--EEEEEeecCCCcceeeeccccCc
Confidence 1222222222344555666665543333 37899999864 322 22222222233555677776543
|
|
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=80.38 E-value=7.3 Score=39.01 Aligned_cols=208 Identities=15% Similarity=0.183 Sum_probs=115.9
Q ss_pred eEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCC-
Q psy3710 32 GFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD- 110 (424)
Q Consensus 32 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~- 110 (424)
.|.|.|+.......+..... -++-+.|+.+.+++.. .+++.|++++.............|.--.|-.+
T Consensus 48 qVvIiDm~d~~~piRRpisa---dSaIm~P~kkvialka--------~~~lQIFniE~KsK~ksh~m~E~VifWkWIs~k 116 (1666)
T KOG0985|consen 48 QVVIIDMADPVNPIRRPISA---DSAIMNPDKKVIALKA--------GKTLQIFNIERKSKSKAHTMDEDVIFWKWISDK 116 (1666)
T ss_pred eEEEEEcCCCcccccCCCCC---CchhhCchHHHHHHhh--------CCeEEEEehhhhhhhccCCCCCceEEEEecchh
Confidence 38888876554432222111 1234567777777766 47999999988777776666666666666444
Q ss_pred ceEEEeeccEEEEeecCCCceeEEEeeCCCCCe--eEEEeecCCCCeEEEeecc------CCeEEEEeCCCCCCCCcccc
Q psy3710 111 KIVVVLEGLIKVYTFIQCPQQLHVFETNPNPKG--LCVLCPNSNNSLLAFPGRK------SGHVHLVDLADPERPPLDIA 182 (424)
Q Consensus 111 ~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~------dg~i~i~d~~~~~~~~~~~~ 182 (424)
-.-++++..|.-|.++....++..+..|..-.+ +....-++..++++..|-. -|.+++|..+. +..+.+.
T Consensus 117 ti~lVT~tsV~hws~egds~PvkmfdRh~sL~gcQiInyk~~~~~eWl~LVGIs~r~~rv~G~MQLyS~~r--kvSQ~ie 194 (1666)
T KOG0985|consen 117 TIALVTATSVYHWSKEGDSAPVKMFDRHRSLNGCQIINYKGNLNAEWLALVGISARTNRVAGKMQLYSVDR--KVSQPIE 194 (1666)
T ss_pred HHHHhhhhheeeecccccchHHHHHHhhhccccceEEEeccccccCceeEEeeecccchhheeeeeeeecc--chhhhhH
Confidence 344556888999998755666666666554333 3333344556666654533 46788888775 4445555
Q ss_pred ccc------------CCeEEEEEccCCCEEEEEecCCcEEEEEECCC---ccee------eEEecc------eeeeeecC
Q psy3710 183 AHE------------APLSCIALNQTGTRLATASYKGTLIRVFDTGS---GQKL------NELRRG------LCVLCPNS 235 (424)
Q Consensus 183 ~~~------------~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~---~~~~------~~~~~~------~~~~~~~~ 235 (424)
+|. .+..-++|.+. ... .|+ +++-.+.. +... ..+..+ ...+..+.
T Consensus 195 gHaa~Fa~fk~egne~p~~lF~fa~r--~~~----~Gk-LhiiEvg~~~tg~~~f~kk~vDvffppda~nDFPvamqvs~ 267 (1666)
T KOG0985|consen 195 GHAASFAAFKDEGNEVPSCLFSFAVR--KPT----GGK-LHIIEVGDPPTGNMPFLKKKVDVFFPPDAINDFPVAMQVSA 267 (1666)
T ss_pred HHHHHHHHhcccCCCCceEEEEecCC--CCC----CCe-eEEEecCCCccCCCcchhhhhhccCChhhccccchheeecc
Confidence 552 23333333331 111 124 55554432 2111 111111 12233344
Q ss_pred CCCeEEEEeecCCeEEEEeCCCCCC
Q psy3710 236 NNSLLAFPGRKSGHVHLVDLADPER 260 (424)
Q Consensus 236 ~~~~~~~~~~~dg~i~i~d~~~~~~ 260 (424)
..+.+.+ -..-|.+++||++++.+
T Consensus 268 k~~vIyL-iTKyG~ihlYdlEt~tc 291 (1666)
T KOG0985|consen 268 KYGVIYL-ITKYGYIHLYDLETGTC 291 (1666)
T ss_pred ccCeEEE-Eeecchhhhhhhhhhhh
Confidence 4444443 67889999999998763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 424 | ||||
| 4av8_A | 339 | Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length | 3e-23 | ||
| 3vu4_A | 355 | Crystal Structure Of Kluyvelomyces Marxianus Hsv2 L | 1e-22 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-06 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 1e-06 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 1e-06 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-06 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-06 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-06 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-06 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 1e-06 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-06 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-06 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-06 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-06 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-06 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-06 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 3e-06 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 3e-06 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-06 |
| >pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length = 339 | Back alignment and structure |
|
| >pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2 Length = 355 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 424 | |||
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.98 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.97 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.95 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.95 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.95 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.94 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.94 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.94 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.94 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.93 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.93 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.93 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.93 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.92 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.92 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.92 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.91 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.91 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.91 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.9 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.9 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.89 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.89 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.89 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.89 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.88 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.88 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.88 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.87 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.86 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.86 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.85 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.84 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.84 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.84 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.84 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.83 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.82 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.82 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.8 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.8 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.78 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.78 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.76 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.76 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.74 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.73 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.72 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.71 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.71 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.7 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.7 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.69 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.69 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.69 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.69 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.69 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.67 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.67 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.67 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.66 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.65 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.62 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.62 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.62 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.61 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.61 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.61 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.61 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.6 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.59 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.56 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.54 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.54 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.53 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.53 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.52 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.51 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.51 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.5 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.49 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.48 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.47 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.47 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.46 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.46 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.44 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.42 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.41 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.4 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.38 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.37 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.36 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.36 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.34 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.33 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.33 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.32 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.32 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.3 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.3 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.3 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.28 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.22 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.22 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.22 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.21 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.2 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.15 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 99.14 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 99.13 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.13 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.11 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.11 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.1 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.1 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.1 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.07 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.04 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.99 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.99 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.98 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 98.94 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.94 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.91 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.91 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.85 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.84 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.83 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.78 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.76 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.76 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.75 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.75 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.73 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.73 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.68 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.68 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.65 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.64 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.62 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.6 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.55 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.53 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.52 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.47 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.47 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.46 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.45 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.45 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.44 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.42 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.4 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.39 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.39 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.33 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.29 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.29 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.27 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.26 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.26 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.22 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.22 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.19 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.18 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 98.17 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.16 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.15 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.06 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.02 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.9 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.86 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.76 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.71 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.71 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.58 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.57 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.39 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.37 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.35 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.28 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.21 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.2 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.18 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.17 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.16 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.14 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 97.0 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.0 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.94 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.92 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.91 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.9 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.84 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.8 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.78 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.77 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.72 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.58 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.57 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.51 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.14 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.64 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.36 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.15 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.13 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.11 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.02 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.02 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 94.96 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 94.45 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 93.82 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 93.73 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.05 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 92.72 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 91.44 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 87.67 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 87.27 |
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-53 Score=399.92 Aligned_cols=402 Identities=13% Similarity=0.114 Sum_probs=309.3
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcc--cccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCe
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKE--KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNR 81 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 81 (424)
.+.+|.+.|++++|+|+|++||+|+.++ |+|||+.+++. ......|.+.|..++|+|+++.+++++.+.. .++.
T Consensus 54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~---~~~~ 130 (611)
T 1nr0_A 54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE---RFGH 130 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS---CSEE
T ss_pred EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC---ceeE
Confidence 4789999999999999999999999998 99999876544 2334567899999999999999998885410 1247
Q ss_pred EEEEECCCCcEEEEEe-ecCCeEEEEecCCce-EEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeE
Q psy3710 82 VMIWDDLKKQVVICLE-FNAPVKGVRLRRDKI-VVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLL 156 (424)
Q Consensus 82 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (424)
|++|| +++....+. |...|.+++|+|++. .+++ |+.|++||.. ..+....+..|.. .+.+++|+|++++|
T Consensus 131 v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~-~~~~~~~l~~H~~--~V~~v~fspdg~~l 205 (611)
T 1nr0_A 131 VFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP-PFKFKSTFGEHTK--FVHSVRYNPDGSLF 205 (611)
T ss_dssp EEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT-TBEEEEEECCCSS--CEEEEEECTTSSEE
T ss_pred EEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECC-CCeEeeeeccccC--ceEEEEECCCCCEE
Confidence 77777 455566666 889999999999974 3443 8999999986 6777788887774 48899999999999
Q ss_pred EEeeccCCeEEEEeCCCCCCCCcccc-------cccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc--
Q psy3710 157 AFPGRKSGHVHLVDLADPERPPLDIA-------AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG-- 227 (424)
Q Consensus 157 ~~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~-- 227 (424)
++ |+.|+.|++||+.++ +....+. +|.+.|.+++|+|+|++|++++.|++ |++||+++++.+..+..+
T Consensus 206 as-~s~D~~i~lwd~~~g-~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~-v~lWd~~~~~~~~~~~~~~~ 282 (611)
T 1nr0_A 206 AS-TGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGTR 282 (611)
T ss_dssp EE-EETTSCEEEEETTTC-CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSS
T ss_pred EE-EECCCcEEEEECCCC-cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe-EEEEeCCCCceeeeecCCCC
Confidence 98 999999999999876 4444442 79999999999999999999999999 999999999988887643
Q ss_pred --eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCcee
Q psy3710 228 --LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL 305 (424)
Q Consensus 228 --~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~ 305 (424)
.....+..++ ..+++++.|+.+++||...+. ....+.+|...|++++|+|+|++|++++.|+. |++||+.+++..
T Consensus 283 ~~~~~~~~~~~~-~~l~s~s~d~~i~~~~~~~~~-~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~-v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 283 IEDQQLGIIWTK-QALVSISANGFINFVNPELGS-IDQVRYGHNKAITALSSSADGKTLFSADAEGH-INSWDISTGISN 359 (611)
T ss_dssp GGGCEEEEEECS-SCEEEEETTCCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEE
T ss_pred ccceeEEEEEcC-CEEEEEeCCCcEEEEeCCCCC-cceEEcCCCCCEEEEEEeCCCCEEEEEeCCCc-EEEEECCCCcee
Confidence 1112222244 445569999999999998765 44566799999999999999999999999999 999999987765
Q ss_pred eee-------------ccCCcEEEEEeCCCcEEEEEccccccccc-----------------------------------
Q psy3710 306 NEL-------------RRDSSYLCVSSDHGTVHVFSVDEAQKINK----------------------------------- 337 (424)
Q Consensus 306 ~~~-------------~~~~~~l~~~~~d~~i~iw~~~~~~~~~~----------------------------------- 337 (424)
..+ +++ ..+++++.|+.+++|++.++.....
T Consensus 360 ~~~~~~h~~~v~~~~~s~~-~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~ 438 (611)
T 1nr0_A 360 RVFPDVHATMITGIKTTSK-GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 438 (611)
T ss_dssp ECSSCSCSSCEEEEEECTT-SCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEE
T ss_pred eecccCCcceEEEEEECCC-CcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEe
Confidence 432 333 4677888888888888765432110
Q ss_pred ---------cccceeeeccCcc----------ccCCceee-------EEeecCCCceEEEEecCCCeEEEEeccCcEEEE
Q psy3710 338 ---------QSSLASASFLPKY----------FSSSWSFC-------KFQIPSDPPCICAFGADSNSIIVICADGSYYKF 391 (424)
Q Consensus 338 ---------~~~~~~~~~~~~~----------~~~~~~~~-------~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~ 391 (424)
......+.+.|.- .-..|++. ....|...+..++|+|||++|++++.|++|++|
T Consensus 439 ~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w 518 (611)
T 1nr0_A 439 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPY 518 (611)
T ss_dssp TTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEE
Confidence 0001123333331 00113321 124578899999999999999999999999999
Q ss_pred EecCCcceeee-------eehhhheecCCCceeeEEE
Q psy3710 392 MFNSKGECWRD-------VYIQFLEMTNDSNLLSCIE 421 (424)
Q Consensus 392 ~~~~~~~~~~~-------~~~~~~~~~~d~~~l~~~~ 421 (424)
++...+++... .....+.|+|||++|+++.
T Consensus 519 ~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs 555 (611)
T 1nr0_A 519 SVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS 555 (611)
T ss_dssp EGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEE
T ss_pred EcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEE
Confidence 99854555432 2345688999999999874
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-49 Score=374.79 Aligned_cols=395 Identities=15% Similarity=0.208 Sum_probs=315.7
Q ss_pred ccccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeE
Q psy3710 4 GTSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 82 (424)
.+|+||++.|++++|||||++||+|+.++ |+|||. +++.+.....|.+.|.+++|+|++++|++++ .|++|
T Consensus 10 ~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~-------~d~~i 81 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASAS-------DDKTV 81 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEE-------TTSCE
T ss_pred eEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEe-------CCCEE
Confidence 45899999999999999999999999988 999995 5666666778999999999999999999988 58999
Q ss_pred EEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEe----------------------
Q psy3710 83 MIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFE---------------------- 136 (424)
Q Consensus 83 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~---------------------- 136 (424)
++||. +++.+..+. |...|.+++|+|++..+++ |+.+++|+... . ......
T Consensus 82 ~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~-~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 158 (577)
T 2ymu_A 82 KLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-LLQTLTGHSSSVWGVAFSPDGQTIASAS 158 (577)
T ss_dssp EEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC-C-EEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred EEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeeccccc-c-eeeeccCCCCceeeeeeecCCccceecc
Confidence 99996 678888887 8999999999999988876 88999998631 1 111110
Q ss_pred -----------------eCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCE
Q psy3710 137 -----------------TNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTR 199 (424)
Q Consensus 137 -----------------~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 199 (424)
.......+..+.++|+++++++ ++.|+.|++||... +....+.+|...|.+++|+|++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~v~~w~~~~--~~~~~~~~~~~~v~~~~~s~dg~~ 235 (577)
T 2ymu_A 159 DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS-ASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQT 235 (577)
T ss_dssp TTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEE-EETTSEEEEECTTS--CEEEEEECCSSCEEEEEECTTSSC
T ss_pred cccceeccccceeeeeeccCCCcceeeeeecCCCCEEEE-EcCCCEEEEEeCCC--cEEEEEecCCCCEEEEEECCCCCE
Confidence 0112234667889999999998 99999999999754 667788899999999999999999
Q ss_pred EEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEE
Q psy3710 200 LATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIA 276 (424)
Q Consensus 200 l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 276 (424)
|++++.|+. |++||. +++.+..+..+ +..++++|++..++. ++.|+.|++||... .....+.+|...|.+++
T Consensus 236 l~~~~~d~~-i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~-~~~d~~i~~w~~~~--~~~~~~~~h~~~v~~~~ 310 (577)
T 2ymu_A 236 IASASDDKT-VKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIAS-ASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVA 310 (577)
T ss_dssp EEEEETTSC-EEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTS--CEEEEECCCSSCEEEEE
T ss_pred EEEEeCCCE-EEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEE-EeCCCEEEEEeCCC--cEEEEEecCCCCeEEEE
Confidence 999999999 999996 45666666544 677899998887665 89999999999754 34566779999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEECCCCceee-----------eeccCCcEEEEEeCCCcEEEEEccccccccccc----cc
Q psy3710 277 LNQTGTRLATASYKGTLIRVFDTGSGQKLN-----------ELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQS----SL 341 (424)
Q Consensus 277 ~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~-----------~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~----~~ 341 (424)
|+|++++|++++.|+. |++||........ .++|++++|++++.|+.|++|+... +.+.... .+
T Consensus 311 ~~~~~~~l~t~~~d~~-i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-~~~~~~~~~~~~v 388 (577)
T 2ymu_A 311 FSPDGQTIASASDDKT-VKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSV 388 (577)
T ss_dssp ECTTSSEEEEEETTSC-EEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-CEEEEEECCSSCE
T ss_pred ECCCCCEEEEEeCCCe-EEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-CEEEEecCCCCCe
Confidence 9999999999999999 9999987554321 3678999999999999999999654 4443332 23
Q ss_pred eeeeccCcc-------c--------cCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCCcceeee----
Q psy3710 342 ASASFLPKY-------F--------SSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWRD---- 402 (424)
Q Consensus 342 ~~~~~~~~~-------~--------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~~~~---- 402 (424)
..+.|.|.. . ........+..|...+..++|+||+++|++++.|+.|++|+.. +++.+.
T Consensus 389 ~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~ 466 (577)
T 2ymu_A 389 RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--GQLLQTLTGH 466 (577)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--SCEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--CCEEEEEcCC
Confidence 344555431 0 0111233466788999999999999999999999999999964 444442
Q ss_pred -eehhhheecCCCceeeEEE
Q psy3710 403 -VYIQFLEMTNDSNLLSCIE 421 (424)
Q Consensus 403 -~~~~~~~~~~d~~~l~~~~ 421 (424)
.....+.++||+++|+++.
T Consensus 467 ~~~v~~~~~spd~~~las~~ 486 (577)
T 2ymu_A 467 SSSVRGVAFSPDGQTIASAS 486 (577)
T ss_dssp SSCEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEe
Confidence 2235678999999999874
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-50 Score=382.61 Aligned_cols=355 Identities=12% Similarity=0.159 Sum_probs=289.7
Q ss_pred ccccccCCceEEEEECCCCC-eeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCe
Q psy3710 4 GTSSTYKNGLLYAGFNQDQG-CFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNR 81 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~g~-~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 81 (424)
..+.+|.+.|++++|+|++. .|++|+.|+ |++||..+++.......|.+.|.+++|+|+++++++++ .|++
T Consensus 141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s-------~D~~ 213 (611)
T 1nr0_A 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG-------GDGT 213 (611)
T ss_dssp BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTSC
T ss_pred ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEE-------CCCc
Confidence 45789999999999999997 589999988 99999988877766777899999999999999999988 6899
Q ss_pred EEEEECCCCcEEEEE--------eecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCC-CCeeEEEee
Q psy3710 82 VMIWDDLKKQVVICL--------EFNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPN-PKGLCVLCP 149 (424)
Q Consensus 82 i~iwd~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 149 (424)
|++||..+++.+..+ .|.+.|.+++|+|++..+++ |++|++||+. +++.+..+..+.. ......+.+
T Consensus 214 i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~-~~~~~~~~~~~~~~~~~~~~~~~ 292 (611)
T 1nr0_A 214 IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA-TLKVEKTIPVGTRIEDQQLGIIW 292 (611)
T ss_dssp EEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSGGGCEEEEEE
T ss_pred EEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCC-CCceeeeecCCCCccceeEEEEE
Confidence 999999999998877 47889999999999987776 8999999996 6777777654321 122444555
Q ss_pred cCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe----
Q psy3710 150 NSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR---- 225 (424)
Q Consensus 150 ~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~---- 225 (424)
++..+++ ++.|+.+++||...+ .....+.+|...|.+++|+|+|++|++++.|+. |++||+.+++....+.
T Consensus 293 --~~~~l~s-~s~d~~i~~~~~~~~-~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~-v~~Wd~~~~~~~~~~~~~h~ 367 (611)
T 1nr0_A 293 --TKQALVS-ISANGFINFVNPELG-SIDQVRYGHNKAITALSSSADGKTLFSADAEGH-INSWDISTGISNRVFPDVHA 367 (611)
T ss_dssp --CSSCEEE-EETTCCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEEECSSCSCS
T ss_pred --cCCEEEE-EeCCCcEEEEeCCCC-CcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCc-EEEEECCCCceeeecccCCc
Confidence 5777887 999999999999875 456677899999999999999999999999999 9999998764322110
Q ss_pred --------------------------------------------------------------------------------
Q psy3710 226 -------------------------------------------------------------------------------- 225 (424)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (424)
T Consensus 368 ~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~ 447 (611)
T 1nr0_A 368 TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI 447 (611)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEEC
T ss_pred ceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeec
Confidence
Q ss_pred -cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCC-Cc
Q psy3710 226 -RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS-GQ 303 (424)
Q Consensus 226 -~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~-~~ 303 (424)
..+..++++|++..++. |+.|+.|++||+...........+|...|++++|+|||++|++++.|++ |++|++.+ ++
T Consensus 448 ~~~v~~va~spdg~~las-gs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~-v~~w~~~~~~~ 525 (611)
T 1nr0_A 448 SYNSSCVALSNDKQFVAV-GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK-VIPYSVANNFE 525 (611)
T ss_dssp SSCEEEEEECTTSCEEEE-EETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEEGGGTTE
T ss_pred CCCceEEEEeCCCCEEEE-eCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCC-EEEEEcCCCCc
Confidence 01245677888776654 9999999999998754211122589999999999999999999999999 99999986 43
Q ss_pred eee--------------eeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeec-CCCce
Q psy3710 304 KLN--------------ELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIP-SDPPC 368 (424)
Q Consensus 304 ~~~--------------~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 368 (424)
.+. .|+|+|++|++++.|++|++|++.+++... ......| .+.+.
T Consensus 526 ~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~--------------------~~~~~~h~~~~v~ 585 (611)
T 1nr0_A 526 LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP--------------------IIIKGAHAMSSVN 585 (611)
T ss_dssp ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCC--------------------EEETTSSTTSCEE
T ss_pred eeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccccc--------------------chhhccCcccCee
Confidence 322 378999999999999999999998754211 0011234 56789
Q ss_pred EEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 369 ICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 369 ~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
.++|+|+++ |++++.||+|++|++.
T Consensus 586 ~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 586 SVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEEEETTE-EEEEETTSCEEEEECC
T ss_pred EEEEcCCCE-EEEecCCCCEEEEecc
Confidence 999999998 9999999999999973
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-48 Score=369.01 Aligned_cols=368 Identities=16% Similarity=0.231 Sum_probs=310.4
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEE
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMI 84 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 84 (424)
...|...|.+++|+|++++|++++.++ |++|+.. ++.......|.+.+.+++|+|+++.+++++ .|+.|++
T Consensus 176 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-------~d~~i~~ 247 (577)
T 2ymu_A 176 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASAS-------DDKTVKL 247 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEE-------TTSCEEE
T ss_pred ccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC-CcEEEEEecCCCCEEEEEECCCCCEEEEEe-------CCCEEEE
Confidence 567899999999999999999999988 9999964 455555667889999999999999999988 5899999
Q ss_pred EECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEee
Q psy3710 85 WDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPG 160 (424)
Q Consensus 85 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (424)
||. +++.+..+. |...|.+++|+|++..+++ ++.|++|+. ..+.+..+..|.. .+.+++++|+++.+++ +
T Consensus 248 w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~--~~~~~~~~~~h~~--~v~~~~~~~~~~~l~t-~ 321 (577)
T 2ymu_A 248 WNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR--NGQLLQTLTGHSS--SVWGVAFSPDGQTIAS-A 321 (577)
T ss_dssp ECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET--TSCEEEEECCCSS--CEEEEEECTTSSEEEE-E
T ss_pred EeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC--CCcEEEEEecCCC--CeEEEEECCCCCEEEE-E
Confidence 996 567777776 8899999999999977765 889999996 4667777777764 4888999999999998 9
Q ss_pred ccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecCCC
Q psy3710 161 RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNN 237 (424)
Q Consensus 161 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~ 237 (424)
+.|+.|++||+.. .....+.+|...|.+++|+|+++++++++.|+. |++||. +++.+..+..+ +..++++|++
T Consensus 322 ~~d~~i~~w~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg 397 (577)
T 2ymu_A 322 SDDKTVKLWNRNG--QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG 397 (577)
T ss_dssp ETTSCEEEEETTS--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEET-TCCEEEEEECCSSCEEEEEECTTS
T ss_pred eCCCeEEEEeCCC--CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEcC-CCCEEEEecCCCCCeEEEEECCCC
Confidence 9999999999876 456678899999999999999999999999999 999995 56677776644 7788999998
Q ss_pred CeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceee-----------
Q psy3710 238 SLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN----------- 306 (424)
Q Consensus 238 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~----------- 306 (424)
..++. ++.|+.|++||... .....+.+|...|++++|+||+++|++++.|+. |++||.. ++.+.
T Consensus 398 ~~l~~-~~~d~~v~~~~~~~--~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~-v~~w~~~-~~~~~~~~~~~~~v~~ 472 (577)
T 2ymu_A 398 QTIAS-ASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT-VKLWNRN-GQLLQTLTGHSSSVRG 472 (577)
T ss_dssp SCEEE-EETTSEEEEECTTC--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEETT-SCEEEEEECCSSCEEE
T ss_pred CEEEE-EeCCCEEEEEeCCC--CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE-EEEEECC-CCEEEEEcCCCCCEEE
Confidence 87765 89999999999643 345677799999999999999999999999999 9999975 44433
Q ss_pred -eeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEecc
Q psy3710 307 -ELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICAD 385 (424)
Q Consensus 307 -~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 385 (424)
.|+|++++|++++.|+.|++||.. ++.+ ..+..|...|+.++|+||+++|++++.|
T Consensus 473 ~~~spd~~~las~~~d~~i~iw~~~-~~~~----------------------~~~~~h~~~v~~l~~s~dg~~l~s~~~d 529 (577)
T 2ymu_A 473 VAFSPDGQTIASASDDKTVKLWNRN-GQLL----------------------QTLTGHSSSVRGVAFSPDGQTIASASDD 529 (577)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETT-SCEE----------------------EEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred EEEcCCCCEEEEEeCCCEEEEEcCC-CCEE----------------------EEEeCCCCCEEEEEEcCCCCEEEEEECc
Confidence 367899999999999999999964 3432 2355677889999999999999999999
Q ss_pred CcEEEEEecCCcceeeee-----ehhhheecCCCceeeEEE
Q psy3710 386 GSYYKFMFNSKGECWRDV-----YIQFLEMTNDSNLLSCIE 421 (424)
Q Consensus 386 g~v~~~~~~~~~~~~~~~-----~~~~~~~~~d~~~l~~~~ 421 (424)
|.|++|+. ++++++.. .+..+.|+|||++|+++.
T Consensus 530 g~v~lwd~--~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~ 568 (577)
T 2ymu_A 530 KTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 568 (577)
T ss_dssp SEEEEECT--TSCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred CEEEEEeC--CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 99999996 45555532 234678999999999874
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-48 Score=382.21 Aligned_cols=398 Identities=12% Similarity=0.110 Sum_probs=286.7
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEE
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVM 83 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~ 83 (424)
...+|.+.|++++|+|++++||+|+.++ |+||+....+...... |...|..++|+| +++|++++ .|++|+
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s-------~D~~v~ 82 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVIN-------AKDTVY 82 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEE-------TTCEEE
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEE-------CcCeEE
Confidence 3568999999999999999999999999 9999987766543332 578899999999 77888887 589999
Q ss_pred EEECCCCcEEEEEeecCCeEEEEecCCceEEEe---eccEEEEeecCCCcee-----------EEEeeCCCCCeeEEEee
Q psy3710 84 IWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQL-----------HVFETNPNPKGLCVLCP 149 (424)
Q Consensus 84 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 149 (424)
+||+.+++.+..+.+...|.+++|+|++.++++ ||.|++||++ ..+.. ..+..|. ..+.+++|
T Consensus 83 lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~-~~~~~~~~i~~~~~~~~~~~~h~--~~V~sl~~ 159 (902)
T 2oaj_A 83 VLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDID-RDQLSSFKLDNLQKSSFFPAARL--SPIVSIQW 159 (902)
T ss_dssp EEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETT-TTEEEEEEECCHHHHHTCSSSCC--CCCCEEEE
T ss_pred EEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECC-CCccccceeccccccccccccCC--CCeEEEEE
Confidence 999999999999988899999999999987776 8999999996 44432 1112233 45888999
Q ss_pred cCCC-CeEEEeeccCCeEEEEeCCCCCCCCccccc------------------ccCCeEEEEEccCCCEEEEEecCCcEE
Q psy3710 150 NSNN-SLLAFPGRKSGHVHLVDLADPERPPLDIAA------------------HEAPLSCIALNQTGTRLATASYKGTLI 210 (424)
Q Consensus 150 ~~~~-~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~l~~~~~d~~~i 210 (424)
+|++ ..+++ |+.||.| +||++++ +....+.. |...|.+++|+|+|++|++++.|+. |
T Consensus 160 sp~~~~~l~~-g~~dg~v-lWd~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i 235 (902)
T 2oaj_A 160 NPRDIGTVLI-SYEYVTL-TYSLVEN-EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-L 235 (902)
T ss_dssp ETTEEEEEEE-ECSSCEE-EEETTTT-EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-E
T ss_pred ccCCCCEEEE-EeCCCcE-EEECCCC-ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-E
Confidence 9965 56666 9999999 9999875 44444443 3578999999999999999999999 9
Q ss_pred EEEECCCcceeeE--E-------------------ecceeeeeec----CCCCeEEEE----------------------
Q psy3710 211 RVFDTGSGQKLNE--L-------------------RRGLCVLCPN----SNNSLLAFP---------------------- 243 (424)
Q Consensus 211 ~iwd~~~~~~~~~--~-------------------~~~~~~~~~~----~~~~~~~~~---------------------- 243 (424)
++||+++++++.. + ...+..++|+ |++..++++
T Consensus 236 ~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~ 315 (902)
T 2oaj_A 236 VFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPR 315 (902)
T ss_dssp EEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCC
T ss_pred EEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCC
Confidence 9999998876542 1 0123344442 222233333
Q ss_pred ------------------------------------------------------eecCCeEEEEeCCCCCCCC------e
Q psy3710 244 ------------------------------------------------------GRKSGHVHLVDLADPERPP------L 263 (424)
Q Consensus 244 ------------------------------------------------------~~~dg~i~i~d~~~~~~~~------~ 263 (424)
++.||.|++||+.++.... .
T Consensus 316 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~ 395 (902)
T 2oaj_A 316 YSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQ 395 (902)
T ss_dssp GGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCG
T ss_pred ccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCC
Confidence 3345667777765442110 0
Q ss_pred ee----------------------------------ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCcee----
Q psy3710 264 DI----------------------------------AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL---- 305 (424)
Q Consensus 264 ~~----------------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~---- 305 (424)
.+ .+|...+.+++|+|++++|++|+.|++ |++||+.++...
T Consensus 396 ~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~Dgt-VrlWd~~~g~~~~~~~ 474 (902)
T 2oaj_A 396 NLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGS-VRIYDASHGDIQDNAS 474 (902)
T ss_dssp GGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSE-EEEEESSCCTTTTTBC
T ss_pred cccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCc-EEEEECCCccccCCce
Confidence 11 233334444556789999999999999 999999876421
Q ss_pred -------------------eeeccCCcEEEEEeCCCcEEEEEcccccccccc----ccceeeec-------c--------
Q psy3710 306 -------------------NELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQ----SSLASASF-------L-------- 347 (424)
Q Consensus 306 -------------------~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~----~~~~~~~~-------~-------- 347 (424)
..|+|++++||+|+.||+|+||++.+++..... .......+ .
T Consensus 475 ~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (902)
T 2oaj_A 475 FEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVR 554 (902)
T ss_dssp EEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECG
T ss_pred EEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccccc
Confidence 137899999999999999999999886421110 00000000 0
Q ss_pred ----CccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCCcceee-----------eeehhhheec-
Q psy3710 348 ----PKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWR-----------DVYIQFLEMT- 411 (424)
Q Consensus 348 ----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~~~-----------~~~~~~~~~~- 411 (424)
+....+-..+..+..|.+.|+.++||||| +||+|+.||+|++||+. ++.++. ..++..++|+
T Consensus 555 ~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~-~~~~~~~~~~~~~~~gh~~~V~sv~Fs~ 632 (902)
T 2oaj_A 555 DRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRR-GPAIIYMENIREISGAQSACVTCIEFVI 632 (902)
T ss_dssp GGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETT-TTEEEEEEEGGGTCSSCCCCEEEEEEEE
T ss_pred ccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECC-CCeEEEEeehhHhccccccceEEEEEEE
Confidence 00000001134566789999999999999 99999999999999986 443332 1225567899
Q ss_pred ----CCC---ceeeEEE
Q psy3710 412 ----NDS---NLLSCIE 421 (424)
Q Consensus 412 ----~d~---~~l~~~~ 421 (424)
||| ++|+++.
T Consensus 633 ~~~~~Dg~~~~~l~sgs 649 (902)
T 2oaj_A 633 MEYGDDGYSSILMVCGT 649 (902)
T ss_dssp EECTTSSSEEEEEEEEE
T ss_pred EecCCCCCcceEEEEEe
Confidence 886 8888773
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-48 Score=395.59 Aligned_cols=399 Identities=15% Similarity=0.168 Sum_probs=319.4
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEE
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMI 84 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 84 (424)
+.+|.+.|++++|+|+|++||+|+.++ |++||+.+++.......|.+.|.+++|+|+++++++++ .|++|++
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-------~d~~v~v 683 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCS-------ADKKVKI 683 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTSEEEE
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEe-------CCCeEEE
Confidence 568999999999999999999999988 99999999988777778999999999999999999988 5899999
Q ss_pred EECCCCcEEEEEe-ecCCeEEEEecCC--ceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEE
Q psy3710 85 WDDLKKQVVICLE-FNAPVKGVRLRRD--KIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAF 158 (424)
Q Consensus 85 wd~~~~~~~~~~~-~~~~v~~~~~~~~--~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (424)
||+.+++.+..+. |...|.+++|+|+ +.++++ |+.|++||+. +++....+..|... +.+++|+|+++++++
T Consensus 684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~-~~~~~~~~~~h~~~--v~~~~~sp~~~~l~s 760 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN-QKECRNTMFGHTNS--VNHCRFSPDDELLAS 760 (1249)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETT-SSSEEEEECCCSSC--EEEEEECSSTTEEEE
T ss_pred EECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECC-CcchhheecCCCCC--EEEEEEecCCCEEEE
Confidence 9999999999988 8999999999994 445554 8999999997 77888888877754 889999999999998
Q ss_pred eeccCCeEEEEeCCCCCCC-----------------------------------------------------Cc-ccccc
Q psy3710 159 PGRKSGHVHLVDLADPERP-----------------------------------------------------PL-DIAAH 184 (424)
Q Consensus 159 ~~~~dg~i~i~d~~~~~~~-----------------------------------------------------~~-~~~~~ 184 (424)
++.||.|++||+.++... .. ...+|
T Consensus 761 -~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~ 839 (1249)
T 3sfz_A 761 -CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH 839 (1249)
T ss_dssp -EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS
T ss_pred -EECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC
Confidence 999999999998754100 00 01267
Q ss_pred cCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCC-----
Q psy3710 185 EAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLA----- 256 (424)
Q Consensus 185 ~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~----- 256 (424)
...|.+++|+|+++.+++++.|+. |++||+.+++.+..+..+ +..++++|++..++. ++.||.|++||+.
T Consensus 840 ~~~v~~~~~sp~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s-~s~dg~v~vw~~~~~~~~ 917 (1249)
T 3sfz_A 840 HSTIQYCDFSPYDHLAVIALSQYC-VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLT-ASDDQTIRVWETKKVCKN 917 (1249)
T ss_dssp SSCCCEEEECSSTTEEEEECSSSC-EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE-EETTSCEEEEEHHHHHSC
T ss_pred CCceEEEEEcCCCCEEEEEeCCCe-EEEEEcCCCceeeecCCCccceEEEEECCCCCEEEE-EeCCCeEEEEEcccccee
Confidence 889999999999999999999999 999999998887777654 566777777665443 6667777777643
Q ss_pred --------------------------------------------------------------------------CCCCCC
Q psy3710 257 --------------------------------------------------------------------------DPERPP 262 (424)
Q Consensus 257 --------------------------------------------------------------------------~~~~~~ 262 (424)
++. ..
T Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~-~~ 996 (1249)
T 3sfz_A 918 SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR-VF 996 (1249)
T ss_dssp CSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS-CE
T ss_pred eeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc-ee
Confidence 222 23
Q ss_pred eeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeee-----------eccCCcEEEEEeCCCcEEEEEccc
Q psy3710 263 LDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE-----------LRRDSSYLCVSSDHGTVHVFSVDE 331 (424)
Q Consensus 263 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~-----------~~~~~~~l~~~~~d~~i~iw~~~~ 331 (424)
..+.+|...|++++|+|++++|++++.|+. |++||+.+++.... +.++ ..+++++.|+.|++||+.+
T Consensus 997 ~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~v~vwd~~~ 1074 (1249)
T 3sfz_A 997 SSGVGHKKAVRHIQFTADGKTLISSSEDSV-IQVWNWQTGDYVFLQAHQETVKDFRLLQD-SRLLSWSFDGTVKVWNVIT 1074 (1249)
T ss_dssp EECCCCSSCCCCEEECSSSSCEEEECSSSB-EEEEETTTTEEECCBCCSSCEEEEEECSS-SEEEEEESSSEEEEEETTT
T ss_pred eecccCCCceEEEEECCCCCEEEEEcCCCE-EEEEECCCCceEEEecCCCcEEEEEEcCC-CcEEEEECCCcEEEEECCC
Confidence 345579999999999999999999999999 99999999876542 3454 4678899999999999999
Q ss_pred ccccccccc----ceeeeccCcc----------ccCCcee------eEEeecCCCceEEEEecCCCeEEEEeccCcEEEE
Q psy3710 332 AQKINKQSS----LASASFLPKY----------FSSSWSF------CKFQIPSDPPCICAFGADSNSIIVICADGSYYKF 391 (424)
Q Consensus 332 ~~~~~~~~~----~~~~~~~~~~----------~~~~~~~------~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~ 391 (424)
++....... .....+.|.. .-..|++ ..+..|.+.++.++|+||+++|++++.||.|++|
T Consensus 1075 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vw 1154 (1249)
T 3sfz_A 1075 GRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154 (1249)
T ss_dssp TCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEE
T ss_pred CceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 877654432 2333444431 0111332 2355678899999999999999999999999999
Q ss_pred EecCCcceeee--------------eehhhheecCCCceeeEEE
Q psy3710 392 MFNSKGECWRD--------------VYIQFLEMTNDSNLLSCIE 421 (424)
Q Consensus 392 ~~~~~~~~~~~--------------~~~~~~~~~~d~~~l~~~~ 421 (424)
++. ++++... .....+.++|||++|++++
T Consensus 1155 d~~-~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~ 1197 (1249)
T 3sfz_A 1155 NVS-DGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197 (1249)
T ss_dssp ESS-SSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES
T ss_pred ECC-CCceEEEeccccccccccccCceEEEEEECCCCCEEEECC
Confidence 998 4443322 2345678999999998863
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=378.91 Aligned_cols=391 Identities=14% Similarity=0.184 Sum_probs=302.9
Q ss_pred ccccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeE
Q psy3710 4 GTSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 82 (424)
..+.+|.+.|++++|+|+|++||+|+.++ |++||+.+++.......|.+.+.++.|+++++..++++++ .|+.|
T Consensus 651 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~-----~d~~v 725 (1249)
T 3sfz_A 651 LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGS-----NDFFL 725 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEE-----TTSCE
T ss_pred EEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEe-----CCCeE
Confidence 34778999999999999999999999888 9999999998887778899999999999965543333333 58999
Q ss_pred EEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEee---------------------
Q psy3710 83 MIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFET--------------------- 137 (424)
Q Consensus 83 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~--------------------- 137 (424)
++||+.+++.+..+. |...|.+++|+|++..+++ |+.|++||+. .++....+..
T Consensus 726 ~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 804 (1249)
T 3sfz_A 726 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR-SANERKSINVKRFFLSSEDPPEDVEVIVKCC 804 (1249)
T ss_dssp EEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGG-GTEEEEEEECCCCC--------CCCCCBCCC
T ss_pred EEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCC-CCcccceecccccccccCCccccccceEEEE
Confidence 999999999998887 8999999999999977765 8999999986 3333222211
Q ss_pred --------------------------------CCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCccccccc
Q psy3710 138 --------------------------------NPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHE 185 (424)
Q Consensus 138 --------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 185 (424)
..+...+.+++++|++..+++ ++.+|.|++||+.++ .....+.+|.
T Consensus 805 ~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~dg~v~vwd~~~~-~~~~~~~~h~ 882 (1249)
T 3sfz_A 805 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI-ALSQYCVELWNIDSR-LKVADCRGHL 882 (1249)
T ss_dssp CBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEE-ECSSSCEEEEETTTT-EEEEEECCCS
T ss_pred EECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEE-EeCCCeEEEEEcCCC-ceeeecCCCc
Confidence 012234667889999999998 999999999999986 6777888999
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEEECCCc-----------------------------------------------
Q psy3710 186 APLSCIALNQTGTRLATASYKGTLIRVFDTGSG----------------------------------------------- 218 (424)
Q Consensus 186 ~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~----------------------------------------------- 218 (424)
..|.+++|+|+++.+++++.|+. |++||+.+.
T Consensus 883 ~~v~~v~~spdg~~l~s~s~dg~-v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1249)
T 3sfz_A 883 SWVHGVMFSPDGSSFLTASDDQT-IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPE 961 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSC-EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECC
T ss_pred cceEEEEECCCCCEEEEEeCCCe-EEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEccc
Confidence 99999999999999999999999 999985421
Q ss_pred --------------------------------ceeeEEec---ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCC----
Q psy3710 219 --------------------------------QKLNELRR---GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE---- 259 (424)
Q Consensus 219 --------------------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~---- 259 (424)
+....+.. .+..++++|++..++. ++.||.|++||+.+++
T Consensus 962 ~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-~~~dg~i~vwd~~~~~~~~~ 1040 (1249)
T 3sfz_A 962 AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS-SSEDSVIQVWNWQTGDYVFL 1040 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEE-ECSSSBEEEEETTTTEEECC
T ss_pred CcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEE-EcCCCEEEEEECCCCceEEE
Confidence 11111111 1445677777665554 6666666666655421
Q ss_pred -----------------------------------CCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCce
Q psy3710 260 -----------------------------------RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK 304 (424)
Q Consensus 260 -----------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~ 304 (424)
.....+.+|...|.+++|+|+++++++++.|+. |++||+.++++
T Consensus 1041 ~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~-v~iwd~~~~~~ 1119 (1249)
T 3sfz_A 1041 QAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKT-AKIWSFDLLSP 1119 (1249)
T ss_dssp BCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSC-CCEECSSSSSC
T ss_pred ecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCc-EEEEECCCcce
Confidence 123455678999999999999999999999999 99999988776
Q ss_pred ee------------eeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEE
Q psy3710 305 LN------------ELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAF 372 (424)
Q Consensus 305 ~~------------~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (424)
+. .|+|++++|++++.||.|++||+.+++.+......... .....|.+.++.++|
T Consensus 1120 ~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~-------------~~~~~~~~~v~~l~f 1186 (1249)
T 3sfz_A 1120 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVE-------------EGTATHGGWVTDVCF 1186 (1249)
T ss_dssp SBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC--------------------CCSCCCEEEE
T ss_pred eeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccc-------------ccccccCceEEEEEE
Confidence 54 36789999999999999999999998876543221110 112346778999999
Q ss_pred ecCCCeEEEEeccCcEEEEEecCCcceeeee-----ehhhheecCCCceeeEEE
Q psy3710 373 GADSNSIIVICADGSYYKFMFNSKGECWRDV-----YIQFLEMTNDSNLLSCIE 421 (424)
Q Consensus 373 s~~~~~l~~~~~dg~v~~~~~~~~~~~~~~~-----~~~~~~~~~d~~~l~~~~ 421 (424)
+||+++|++++ |.|++|++. .+++.... ....+.++|||++|++++
T Consensus 1187 s~dg~~l~s~~--g~v~vwd~~-~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 1237 (1249)
T 3sfz_A 1187 SPDSKTLVSAG--GYLKWWNVA-TGDSSQTFYTNGTNLKKIHVSPDFRTYVTVD 1237 (1249)
T ss_dssp CTTSSCEEEES--SSEEEBCSS-SCBCCCCCCCSSCCCCCCEECSSSCCEEEEC
T ss_pred CCCCCEEEECC--CeEEEEECC-CCceeeeeeccCCcccEEEECCCCCEEEEec
Confidence 99999999886 899999997 45544432 345688999999999874
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-45 Score=349.14 Aligned_cols=402 Identities=12% Similarity=0.129 Sum_probs=292.9
Q ss_pred ccccccCCc-eEEEEECC--CCCeeEeecCCe-EEEEeCCcC--------cccccccccCCCeeeEEEeccCceEEEEeC
Q psy3710 4 GTSSTYKNG-LLYAGFNQ--DQGCFACGMEDG-FRIYNCDPL--------KEKERQDFTDGGLGHVEMLFRCNYLALVGG 71 (424)
Q Consensus 4 ~~l~~h~~~-V~~~~~s~--~g~~la~g~~~~-i~iw~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 71 (424)
..+.+|.+. |++++|+| ++++||+|+.++ |++||+.++ +.......|.+.+..++|+|+++++++++.
T Consensus 57 ~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 136 (615)
T 1pgu_A 57 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 136 (615)
T ss_dssp EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred eEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEecc
Confidence 347889999 99999999 999999999888 999999755 334445567899999999999999999884
Q ss_pred CcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCce-EEEe---eccEEEEeecCCCceeEEEeeCCCC-CeeE
Q psy3710 72 GTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKI-VVVL---EGLIKVYTFIQCPQQLHVFETNPNP-KGLC 145 (424)
Q Consensus 72 ~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~-~~~~ 145 (424)
... ..+.|++|| +++.+..+. |...|.+++|+|++. .+++ |+.|++||+. ..+.+..+..|... ..+.
T Consensus 137 ~~~---~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~-~~~~~~~~~~~~~~~~~v~ 210 (615)
T 1pgu_A 137 GRD---NFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP-PFKFSASDRTHHKQGSFVR 210 (615)
T ss_dssp CSS---CSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT-TBEEEEEECSSSCTTCCEE
T ss_pred CCC---CccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCC-CcceeeeecccCCCCceEE
Confidence 310 015777777 677777777 889999999999985 4443 8999999986 77888888877641 1488
Q ss_pred EEeecCC-CCeEEEeeccCCeEEEEeCCCCCCCCccc-c---cccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcce
Q psy3710 146 VLCPNSN-NSLLAFPGRKSGHVHLVDLADPERPPLDI-A---AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK 220 (424)
Q Consensus 146 ~~~~~~~-~~~l~~~~~~dg~i~i~d~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~ 220 (424)
+++|+|+ ++++++ ++.||.|++||+.++ +.+..+ . .|...|.+++|+ ++++|++++.|+. |++||+++++.
T Consensus 211 ~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~-i~~wd~~~~~~ 286 (615)
T 1pgu_A 211 DVEFSPDSGEFVIT-VGSDRKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADAT-IRVWDVTTSKC 286 (615)
T ss_dssp EEEECSTTCCEEEE-EETTCCEEEEETTTC-CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSE-EEEEETTTTEE
T ss_pred EEEECCCCCCEEEE-EeCCCeEEEEECCCC-CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCc-EEEEECCCCcE
Confidence 9999999 999998 999999999999986 566666 5 899999999999 9999999999999 99999999998
Q ss_pred eeEEecc-------eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCC----------------------
Q psy3710 221 LNELRRG-------LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAP---------------------- 271 (424)
Q Consensus 221 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------------------- 271 (424)
+..+..+ ...+.+ +++. .+++++.+|.|++||+.+++ +...+.+|...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~-~~~~-~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 287 VQKWTLDKQQLGNQQVGVVA-TGNG-RIISLSLDGTLNFYELGHDE-VLKTISGHNKGITALTVNPLISGSYDGRIMEWS 363 (615)
T ss_dssp EEEEECCTTCGGGCEEEEEE-EETT-EEEEEETTSCEEEEETTEEE-EEEEECCCSSCEEEEETTTTEEEETTSCEEETT
T ss_pred EEEEcCCCCcccCceeEEEe-CCCC-eEEEEECCCCEEEEECCCCc-EEEEEeCCCCCEEEEEecCcEEECCCCeEEEEE
Confidence 8887754 233444 3444 45558999999999988643 23334444444
Q ss_pred -----------eEEEEEcCCCCEEEEEeCCCcEEEEEECCCC----------------------------------ceee
Q psy3710 272 -----------LSCIALNQTGTRLATASYKGTLIRVFDTGSG----------------------------------QKLN 306 (424)
Q Consensus 272 -----------v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~----------------------------------~~~~ 306 (424)
|.+++| +++..|++++.|+. |++||+.++ +.+.
T Consensus 364 ~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~-i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (615)
T 1pgu_A 364 SSSMHQDHSNLIVSLDN-SKAQEYSSISWDDT-LKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 441 (615)
T ss_dssp TTEEECCCCSCEEEEEC-CSTTCCEEEETTTE-EEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred chhhcCcccCceEEEEE-CCCcEEEEEeCCCC-EEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceee
Confidence 444444 33566666666666 666665432 1211
Q ss_pred eec---------cCCcEEEEEeC-CCcEEEEEccccccc-cc----cccceeeeccCcc-------ccC---Ccee----
Q psy3710 307 ELR---------RDSSYLCVSSD-HGTVHVFSVDEAQKI-NK----QSSLASASFLPKY-------FSS---SWSF---- 357 (424)
Q Consensus 307 ~~~---------~~~~~l~~~~~-d~~i~iw~~~~~~~~-~~----~~~~~~~~~~~~~-------~~~---~~~~---- 357 (424)
.+. -.++++++++. |+.|++||+.+++.. .. ........+.|.. .++ .|++
T Consensus 442 ~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 521 (615)
T 1pgu_A 442 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE 521 (615)
T ss_dssp EEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred ecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc
Confidence 111 01667777777 888888888775442 11 1223334444431 000 1221
Q ss_pred --eEEee-cCCCceEEEEec----------CCCeEEEEeccCcEEEEEecCCcceeee-----eehhhheecCCCceeeE
Q psy3710 358 --CKFQI-PSDPPCICAFGA----------DSNSIIVICADGSYYKFMFNSKGECWRD-----VYIQFLEMTNDSNLLSC 419 (424)
Q Consensus 358 --~~~~~-~~~~~~~~~~s~----------~~~~l~~~~~dg~v~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~l~~ 419 (424)
..+.. |...++.++|+| ++++|++++.||.|++|++....++... .....+.++||++ |++
T Consensus 522 ~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s 600 (615)
T 1pgu_A 522 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVS 600 (615)
T ss_dssp EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEE
T ss_pred ceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEE
Confidence 12233 778899999999 9999999999999999999855455543 2345678999999 777
Q ss_pred EE
Q psy3710 420 IE 421 (424)
Q Consensus 420 ~~ 421 (424)
+.
T Consensus 601 ~~ 602 (615)
T 1pgu_A 601 SG 602 (615)
T ss_dssp EE
T ss_pred ec
Confidence 63
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-45 Score=358.20 Aligned_cols=398 Identities=14% Similarity=0.188 Sum_probs=317.9
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEE
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVM 83 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~ 83 (424)
.+.+|.+.|++++|+|+|++||+|+.++ |+|||+.+++.......|.+.|.+++|+|+++.+++++ .|+.|+
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~dg~i~ 80 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-------DDFRIR 80 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE-------TTSEEE
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEe-------CCCeEE
Confidence 3789999999999999999999999888 99999999888777788899999999999999999988 589999
Q ss_pred EEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecC-CCCeEEE
Q psy3710 84 IWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNS-NNSLLAF 158 (424)
Q Consensus 84 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 158 (424)
+||+.+++.+..+. |...|.+++|+|++..+++ |+.|++|++.........+..|..+ +.+++|+| ++..+++
T Consensus 81 vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~--v~~~~~~p~~~~~l~~ 158 (814)
T 3mkq_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF--VMCVAFNPKDPSTFAS 158 (814)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSC--EEEEEEETTEEEEEEE
T ss_pred EEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCc--EEEEEEEcCCCCEEEE
Confidence 99999999999988 8999999999999976665 8999999997444667777777644 88899999 7788887
Q ss_pred eeccCCeEEEEeCCCCCCCCcccccc-cCCeEEEEEcc--CCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeee
Q psy3710 159 PGRKSGHVHLVDLADPERPPLDIAAH-EAPLSCIALNQ--TGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLC 232 (424)
Q Consensus 159 ~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~ 232 (424)
++.||.|++||+.++ .....+..+ ...+..++|+| ++.++++++.|+. |++||+++++.+..+..+ +..++
T Consensus 159 -~~~dg~v~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~v~~~~ 235 (814)
T 3mkq_A 159 -GCLDRTVKVWSLGQS-TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLEGHMSNVSFAV 235 (814)
T ss_dssp -EETTSEEEEEETTCS-SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE-EEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred -EeCCCeEEEEECCCC-cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE-EEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 999999999999876 455555544 48999999999 9999999999999 999999999988888754 77889
Q ss_pred ecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEECCCCce-------
Q psy3710 233 PNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTR-LATASYKGTLIRVFDTGSGQK------- 304 (424)
Q Consensus 233 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~~i~iwd~~~~~~------- 304 (424)
++|++..++. ++.||.|++||+.+++ ....+..|...+.+++|+|++.. +++++.++. +.+|++..+..
T Consensus 236 ~~~~~~~l~~-~~~dg~v~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 312 (814)
T 3mkq_A 236 FHPTLPIIIS-GSEDGTLKIWNSSTYK-VEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGNDEPTLSLDPV 312 (814)
T ss_dssp ECSSSSEEEE-EETTSCEEEEETTTCS-EEEEECCSSSSEEEEEECTTCGGGEEEEEETTE-EEEEECSCCSCCEEECSS
T ss_pred EcCCCCEEEE-EeCCCeEEEEECCCCc-EEEEeecCCCcEEEEEEccCCCceEEEEEeCCC-EEEEEcCCCCceeEECCC
Confidence 9999886654 8999999999998865 45566788899999999999873 244444555 88888754211
Q ss_pred ---e---------------------------------------------eeeccCCcEEEEEeCCCcEEEEEcccccccc
Q psy3710 305 ---L---------------------------------------------NELRRDSSYLCVSSDHGTVHVFSVDEAQKIN 336 (424)
Q Consensus 305 ---~---------------------------------------------~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~ 336 (424)
+ ..++|+|+++++++ |+.+.+|++......
T Consensus 313 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~- 390 (814)
T 3mkq_A 313 GKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK- 390 (814)
T ss_dssp SEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE-
T ss_pred CCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccccc-
Confidence 1 12568999999988 899999998653321
Q ss_pred ccccceeeeccCcc-------ccCC-ceeeEEeecCCCceEEEEecCC---CeEEEEeccCcEEEEEecCCcceeeee--
Q psy3710 337 KQSSLASASFLPKY-------FSSS-WSFCKFQIPSDPPCICAFGADS---NSIIVICADGSYYKFMFNSKGECWRDV-- 403 (424)
Q Consensus 337 ~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~s~~~---~~l~~~~~dg~v~~~~~~~~~~~~~~~-- 403 (424)
.........|.|.. ..+. ..+..+..+...+..++|+|++ ++|++++.||.|++|++. .+++++..
T Consensus 391 ~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~-~~~~~~~~~~ 469 (814)
T 3mkq_A 391 AFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWD-NGTLVRRIDV 469 (814)
T ss_dssp EEEECSEEEECTTSSCEEEECTTCCEEEEETTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTT-TCCEEEEESS
T ss_pred CCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCCccceEEcCCcCccceecceEEEEecCCEEEEEECC-cCcEEEEEec
Confidence 12223334444431 0111 1111234566788899999998 689999999999999997 45554422
Q ss_pred ehhhheecCCCceeeEE
Q psy3710 404 YIQFLEMTNDSNLLSCI 420 (424)
Q Consensus 404 ~~~~~~~~~d~~~l~~~ 420 (424)
....+.++|||++|+.+
T Consensus 470 ~~~~v~~s~dg~~la~~ 486 (814)
T 3mkq_A 470 NAKDVIWSDNGELVMIV 486 (814)
T ss_dssp CEEEEEECTTSSEEEEE
T ss_pred CCCEEEEcCCCCEEEEE
Confidence 22378899999999988
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-45 Score=329.60 Aligned_cols=280 Identities=15% Similarity=0.205 Sum_probs=252.0
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEE
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVM 83 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~ 83 (424)
.+.+|.++|++++|+|++.+|++|+.|+ |+|||+.+++.......|.+.|.+++|+|+++++++++ .|++|+
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs-------~D~~i~ 175 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS-------ADMTIK 175 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE-------TTSCCC
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEe-------CCCeEE
Confidence 4779999999999999999999999998 99999999988777888999999999999999999888 689999
Q ss_pred EEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEe
Q psy3710 84 IWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFP 159 (424)
Q Consensus 84 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (424)
+||+.+++.+..+. |...|.+++|+|++..+++ |+.|++||+. ++..+..+..|... +.++.++|++.++++
T Consensus 176 iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~-~~~~~~~~~~h~~~--v~~~~~~~~g~~l~s- 251 (410)
T 1vyh_C 176 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-TGYCVKTFTGHREW--VRMVRPNQDGTLIAS- 251 (410)
T ss_dssp EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TCCEEEEEECCSSC--EEEEEECTTSSEEEE-
T ss_pred EEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCcEEEEEeCCCcc--EEEEEECCCCCEEEE-
Confidence 99999999998887 8999999999999977765 8999999997 77888888887744 888999999999998
Q ss_pred eccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccC--------------------CCEEEEEecCCcEEEEEECCCcc
Q psy3710 160 GRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT--------------------GTRLATASYKGTLIRVFDTGSGQ 219 (424)
Q Consensus 160 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~d~~~i~iwd~~~~~ 219 (424)
|+.|+.|++||+.++ .....+.+|...|.+++|+|+ +.+|++++.|+. |++||+++++
T Consensus 252 ~s~D~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~-i~iwd~~~~~ 329 (410)
T 1vyh_C 252 CSNDQTVRVWVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTGM 329 (410)
T ss_dssp EETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTTE
T ss_pred EcCCCeEEEEECCCC-ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe-EEEEECCCCc
Confidence 999999999999986 667788899999999999996 678999999999 9999999999
Q ss_pred eeeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q psy3710 220 KLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRV 296 (424)
Q Consensus 220 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~i 296 (424)
++..+.++ +..++++|++..++ +|+.|+.|++||+.+++ ....+.+|...|++++|+|++.+|++|+.|++ |++
T Consensus 330 ~~~~~~~h~~~v~~v~~~~~g~~l~-s~s~D~~i~vwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~-i~v 406 (410)
T 1vyh_C 330 CLMTLVGHDNWVRGVLFHSGGKFIL-SCADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT-VKV 406 (410)
T ss_dssp EEEEEECCSSCEEEEEECSSSSCEE-EEETTTEEEEECCTTSC-CCEEEECCSSCEEEEEECSSSSCEEEEETTSE-EEE
T ss_pred eEEEEECCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCc-eEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCc-EEE
Confidence 99888765 67889999888776 49999999999998766 46677899999999999999999999999999 999
Q ss_pred EECC
Q psy3710 297 FDTG 300 (424)
Q Consensus 297 wd~~ 300 (424)
|+++
T Consensus 407 W~~r 410 (410)
T 1vyh_C 407 WECR 410 (410)
T ss_dssp EC--
T ss_pred EeCC
Confidence 9864
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=319.22 Aligned_cols=278 Identities=18% Similarity=0.247 Sum_probs=246.8
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEE
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVM 83 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~ 83 (424)
++.+|.+.|++++|+|++++|++|+.++ |++||..+++.......|...+..++|+|+++++++++ .|+.++
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-------~d~~v~ 122 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG-------LDNICS 122 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEE-------TTCEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEe-------CCCeEE
Confidence 4789999999999999999999999999 99999998888777777899999999999999999888 689999
Q ss_pred EEECCCCc----EEEEEe-ecCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeE
Q psy3710 84 IWDDLKKQ----VVICLE-FNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLL 156 (424)
Q Consensus 84 iwd~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (424)
+|++.+++ ....+. |.+.|.++.|++++.++.. |+.|++||+. +++.+..+..|... +.+++++|+++++
T Consensus 123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~-~~~~~~~~~~h~~~--v~~~~~~~~~~~l 199 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE-TGQQTTTFTGHTGD--VMSLSLAPDTRLF 199 (340)
T ss_dssp EEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETT-TTEEEEEECCCSSC--EEEEEECTTSSEE
T ss_pred EEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECC-CCcEEEEEcCCCCc--eEEEEECCCCCEE
Confidence 99998753 444555 7899999999999876655 8999999996 77888888877744 8899999999999
Q ss_pred EEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEec-----ceeee
Q psy3710 157 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR-----GLCVL 231 (424)
Q Consensus 157 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-----~~~~~ 231 (424)
++ |+.|+.|++||++++ .....+.+|...|.+++|+|++++|++++.|+. |++||+++++.+..+.. .+..+
T Consensus 200 ~s-g~~d~~v~~wd~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 200 VS-GACDASAKLWDVREG-MCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp EE-EETTSCEEEEETTTC-SEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred EE-EeCCCcEEEEECCCC-eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc-EEEEECCCCcEEEEEccCCcccceEEE
Confidence 98 999999999999986 677788999999999999999999999999999 99999999888777653 36788
Q ss_pred eecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEE
Q psy3710 232 CPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298 (424)
Q Consensus 232 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd 298 (424)
+++|++..++. |+.|+.|++||+.+.+ ....+.+|..+|.+++|+|+|++|++|+.|+. |++||
T Consensus 277 ~~s~~g~~l~~-g~~d~~i~vwd~~~~~-~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~-i~iWd 340 (340)
T 1got_B 277 SFSKSGRLLLA-GYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF-LKIWN 340 (340)
T ss_dssp EECTTSSEEEE-EETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSSCEEEEETTSC-EEEEC
T ss_pred EECCCCCEEEE-ECCCCeEEEEEcccCc-EeeEeecCCCcEEEEEEcCCCCEEEEEcCCcc-EEecC
Confidence 99999887765 9999999999998765 35667899999999999999999999999999 99996
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=314.59 Aligned_cols=280 Identities=12% Similarity=0.199 Sum_probs=245.5
Q ss_pred cccccCCceEEEEECCC----CCeeEeecCCe-EEEEeCCcCcc--cccccccCCCeeeEEEeccCceEEEEeCCcCCCc
Q psy3710 5 TSSTYKNGLLYAGFNQD----QGCFACGMEDG-FRIYNCDPLKE--KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKY 77 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~----g~~la~g~~~~-i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~ 77 (424)
.+.+|.+.|++++|+|+ +.+|++|+.|+ |+||++...+. ......|...|.++++++++..+++++
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s------- 99 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSS------- 99 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEE-------
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEe-------
Confidence 46799999999999985 57899999999 99999876654 334566899999999999999999888
Q ss_pred CCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCC
Q psy3710 78 PNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNN 153 (424)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (424)
.|++|++||+.+++.+..+. +...+.+++|+|++.++++ ++.|++|+++ .++....+..+. ..+.+++|+|++
T Consensus 100 ~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~-~~~~~~~~~~~~--~~v~~~~~spdg 176 (321)
T 3ow8_A 100 LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE-SGKKEYSLDTRG--KFILSIAYSPDG 176 (321)
T ss_dssp TTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT-TCSEEEEEECSS--SCEEEEEECTTS
T ss_pred CCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC-CCceeEEecCCC--ceEEEEEECCCC
Confidence 68999999999999999887 6788999999999988876 8999999997 667777777665 348899999999
Q ss_pred CeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---eee
Q psy3710 154 SLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCV 230 (424)
Q Consensus 154 ~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~ 230 (424)
++|++ |+.||.|++||++++ +.+..+.+|..+|.+++|+|++++|++++.|+. |++||+++++....+..+ +..
T Consensus 177 ~~las-g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~h~~~v~~ 253 (321)
T 3ow8_A 177 KYLAS-GAIDGIINIFDIATG-KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQHANLAGTLSGHASWVLN 253 (321)
T ss_dssp SEEEE-EETTSCEEEEETTTT-EEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEETTTCCEEEEECCCSSCEEE
T ss_pred CEEEE-EcCCCeEEEEECCCC-cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEECCCcceeEEEcCCCCceEE
Confidence 99998 999999999999986 677788999999999999999999999999999 999999999988888765 678
Q ss_pred eeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 231 LCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 231 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
++++|++..++ +++.|+.|++||+++++ ....+.+|...|.+++|+|++++|++++.|+. |++||..
T Consensus 254 ~~~sp~~~~l~-s~s~D~~v~iwd~~~~~-~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~-i~vwd~p 320 (321)
T 3ow8_A 254 VAFCPDDTHFV-SSSSDKSVKVWDVGTRT-CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQE-IHIYDCP 320 (321)
T ss_dssp EEECTTSSEEE-EEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTCC-EEEEECC
T ss_pred EEECCCCCEEE-EEeCCCcEEEEeCCCCE-EEEEEcCCCCcEEEEEECCCCCEEEEEeCCCe-EEEEeCC
Confidence 89999988665 59999999999998866 35667789999999999999999999999999 9999964
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-43 Score=337.46 Aligned_cols=395 Identities=11% Similarity=0.077 Sum_probs=306.9
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCeEEEEeCCcC----cccccccccCCC-eeeEEEec--cCceEEEEeCCcCCCcC
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPL----KEKERQDFTDGG-LGHVEMLF--RCNYLALVGGGTHPKYP 78 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~----~~~~~~~~~~~~-i~~~~~~~--~~~~l~~~~~~~~~~~~ 78 (424)
...|.+.|++++|+|+|++||+++++.|++|+++++ +.......|.+. |.+++|+| +++++++++ .
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~-------~ 86 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD-------E 86 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEE-------T
T ss_pred CCCccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEec-------C
Confidence 457999999999999999999999666999999988 676667778899 99999999 999999988 5
Q ss_pred CCeEEEEECCCC--------cEEEEEe-ecCCeEEEEecCCceEEEe---e----ccEEEEeecCCCceeEEEeeCCCCC
Q psy3710 79 NNRVMIWDDLKK--------QVVICLE-FNAPVKGVRLRRDKIVVVL---E----GLIKVYTFIQCPQQLHVFETNPNPK 142 (424)
Q Consensus 79 d~~i~iwd~~~~--------~~~~~~~-~~~~v~~~~~~~~~~~~~~---~----~~i~v~~~~~~~~~~~~~~~~~~~~ 142 (424)
|+.|++||+.++ +.+..+. |...|.+++|+|++..+++ + +.|.+|| ..+.+..+..|..
T Consensus 87 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d---~~~~~~~~~~~~~-- 161 (615)
T 1pgu_A 87 SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD---SGNSLGEVSGHSQ-- 161 (615)
T ss_dssp TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT---TCCEEEECCSCSS--
T ss_pred CCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE---CCCcceeeecCCc--
Confidence 899999999755 5566666 7899999999999987776 3 5777777 4566777777664
Q ss_pred eeEEEeecCCCC-eEEEeeccCCeEEEEeCCCCCCCCcccccccC---CeEEEEEccC-CCEEEEEecCCcEEEEEECCC
Q psy3710 143 GLCVLCPNSNNS-LLAFPGRKSGHVHLVDLADPERPPLDIAAHEA---PLSCIALNQT-GTRLATASYKGTLIRVFDTGS 217 (424)
Q Consensus 143 ~~~~~~~~~~~~-~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~d~~~i~iwd~~~ 217 (424)
.+.+++|+|+++ .+++ ++.|+.|++||+.+. +....+.+|.. .|.+++|+|+ +++|++++.|+. |++||+++
T Consensus 162 ~v~~~~~~~~~~~~l~~-~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~ 238 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMT-VGDDGSVVFYQGPPF-KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKS 238 (615)
T ss_dssp CEEEEEECSSSSCEEEE-EETTTEEEEEETTTB-EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTT
T ss_pred cEEEEEECCCCCcEEEE-EeCCCcEEEEeCCCc-ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECCC
Confidence 488999999998 5665 999999999999876 66778888999 9999999999 999999999999 99999999
Q ss_pred cceeeEE-e---cc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccC----CCCeEEEEEcCCCCEEEE
Q psy3710 218 GQKLNEL-R---RG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAH----EAPLSCIALNQTGTRLAT 286 (424)
Q Consensus 218 ~~~~~~~-~---~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~ 286 (424)
++.+..+ . .+ +..++++ ++. ++++++.|+.|++||+++++. ...+..+ ...+.++.|+ +++++++
T Consensus 239 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 314 (615)
T 1pgu_A 239 GEFLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSKC-VQKWTLDKQQLGNQQVGVVAT-GNGRIIS 314 (615)
T ss_dssp CCEEEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTEE-EEEEECCTTCGGGCEEEEEEE-ETTEEEE
T ss_pred CCEeEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCcE-EEEEcCCCCcccCceeEEEeC-CCCeEEE
Confidence 9988888 3 22 6778888 555 455599999999999997653 3344444 4678888886 8899999
Q ss_pred EeCCCcEEEEEECCCCceeeeecc--------------------------------------------CCcEEEEEeCCC
Q psy3710 287 ASYKGTLIRVFDTGSGQKLNELRR--------------------------------------------DSSYLCVSSDHG 322 (424)
Q Consensus 287 ~~~d~~~i~iwd~~~~~~~~~~~~--------------------------------------------~~~~l~~~~~d~ 322 (424)
++.|+. |++||+.+++.+..+.. ++..+++++.|+
T Consensus 315 ~~~~g~-i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~ 393 (615)
T 1pgu_A 315 LSLDGT-LNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDD 393 (615)
T ss_dssp EETTSC-EEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTT
T ss_pred EECCCC-EEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCC
Confidence 999999 99999998777655432 266777788888
Q ss_pred cEEEEEcccccccc----------------------------------cc---ccceeeeccCc-----cc-cC---Cce
Q psy3710 323 TVHVFSVDEAQKIN----------------------------------KQ---SSLASASFLPK-----YF-SS---SWS 356 (424)
Q Consensus 323 ~i~iw~~~~~~~~~----------------------------------~~---~~~~~~~~~~~-----~~-~~---~~~ 356 (424)
.+++|++.+++... .. .......+... .. ++ .|+
T Consensus 394 ~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~ 473 (615)
T 1pgu_A 394 TLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFK 473 (615)
T ss_dssp EEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEE
T ss_pred CEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEE
Confidence 88888876543210 00 00000000000 00 11 122
Q ss_pred e-------eEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCCcceeeee------ehhhheecC----------C
Q psy3710 357 F-------CKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWRDV------YIQFLEMTN----------D 413 (424)
Q Consensus 357 ~-------~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~~~~~------~~~~~~~~~----------d 413 (424)
. ..+..|...+..++|+|++++|++++.||.|++|++. .++++... ....+.++| +
T Consensus 474 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~ 552 (615)
T 1pgu_A 474 LSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ-SREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 552 (615)
T ss_dssp TTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred CCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCC-CCcceeEeecCCCCceeEEEEcCccccccccccC
Confidence 2 2234467889999999999999999999999999997 55554432 245678999 9
Q ss_pred CceeeEEE
Q psy3710 414 SNLLSCIE 421 (424)
Q Consensus 414 ~~~l~~~~ 421 (424)
+++|+++.
T Consensus 553 ~~~l~~~~ 560 (615)
T 1pgu_A 553 EDLVATGS 560 (615)
T ss_dssp CCEEEEEE
T ss_pred CCEEEEEc
Confidence 99999884
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-43 Score=305.04 Aligned_cols=282 Identities=15% Similarity=0.182 Sum_probs=241.4
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEE
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVM 83 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~ 83 (424)
++.+|.+.|++++|+|+|++|++|+.++ |++||+++++.......|...+..+.|+++++++++++ .|++|+
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s-------~d~~i~ 80 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-------DDFRIR 80 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE-------TTSEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEEC-------CCCEEE
Confidence 3889999999999999999999999888 99999999888777778899999999999999999988 689999
Q ss_pred EEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecC-CCCeEEE
Q psy3710 84 IWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNS-NNSLLAF 158 (424)
Q Consensus 84 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 158 (424)
+||+.+++.+..+. |...|.+++|+|++.++++ |+.|++||++........+..|... +.+++|+| ++..+++
T Consensus 81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~--v~~v~~~p~~~~~l~s 158 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF--VMCVAFNPKDPSTFAS 158 (304)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSC--EEEEEECTTCTTEEEE
T ss_pred EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCc--EEEEEECCCCCCEEEE
Confidence 99999999999988 8999999999999987776 8999999997444566677777644 88999999 5677777
Q ss_pred eeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEcc--CCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeee
Q psy3710 159 PGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ--TGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCP 233 (424)
Q Consensus 159 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~ 233 (424)
|+.|+.|++||+............|...+..+.|+| ++.+|++++.|+. |++||+++++++..+..+ +..+++
T Consensus 159 -gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~iWd~~~~~~~~~~~~h~~~v~~~~~ 236 (304)
T 2ynn_A 159 -GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLEGHMSNVSFAVF 236 (304)
T ss_dssp -EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE-EEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred -EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe-EEEEeCCCCccceeeCCCCCCEEEEEE
Confidence 999999999999876333333346678899999987 6789999999999 999999999999998866 677889
Q ss_pred cCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEECCC
Q psy3710 234 NSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT--RLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 234 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~~i~iwd~~~ 301 (424)
+|++..+ ++|+.||.|++||+.+.+ ....+..|...+.+++|+|++. ++++|+.|| +.+|++..
T Consensus 237 ~p~~~~l-~s~s~Dg~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g--~~~~~~~~ 302 (304)
T 2ynn_A 237 HPTLPII-ISGSEDGTLKIWNSSTYK-VEKTLNVGLERSWCIATHPTGRKNYIASGFDNG--FTVLSLGN 302 (304)
T ss_dssp CSSSSEE-EEEETTSCEEEEETTTCC-EEEEECCSSSSEEEEEECTTCGGGCEEEEETTE--EEEEECC-
T ss_pred CCCCCEE-EEEcCCCeEEEEECCCCc-eeeeccCCCccEEEEEECCCCCceEEEEecCCc--eEEEEecc
Confidence 9988755 469999999999999866 4566778999999999999875 577777766 78888765
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=314.28 Aligned_cols=278 Identities=14% Similarity=0.174 Sum_probs=240.0
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEE
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVM 83 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~ 83 (424)
.+.+|.+.|++++|+|++++||+|+.|+ |++||..+++.......|...+..++|+|++..+++++ .|+.++
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~-------~d~~i~ 131 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGG-------LDNKCS 131 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEES-------TTSEEE
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEee-------CCCCEE
Confidence 4789999999999999999999999999 99999988887666777888999999999999998888 689999
Q ss_pred EEECCCC------cEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeec--C
Q psy3710 84 IWDDLKK------QVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPN--S 151 (424)
Q Consensus 84 iwd~~~~------~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 151 (424)
+|++... .....+. |...|.+++|+|++..+++ |+.|++||+. .++.+..+..|... +.++.++ +
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~-~~~~~~~~~~h~~~--v~~~~~~~~~ 208 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVE-SGQLLQSFHGHGAD--VLCLDLAPSE 208 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TCCEEEEEECCSSC--EEEEEECCCS
T ss_pred EEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCC-CCeEEEEEcCCCCC--eEEEEEEeCC
Confidence 9998643 2233444 8899999999999866654 8999999997 78888889888765 5555554 4
Q ss_pred CCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEec-----
Q psy3710 152 NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR----- 226 (424)
Q Consensus 152 ~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~----- 226 (424)
++.++++ |+.||.|++||++++ +.+..+.+|...|.+++|+|++++|++++.|+. |++||+++++.+..+..
T Consensus 209 ~g~~l~s-gs~Dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 209 TGNTFVS-GGCDKKAMVWDMRSG-QCVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp SCCEEEE-EETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCS
T ss_pred CCCEEEE-EeCCCeEEEEECCCC-cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECCCCcEEEEEcCCCccc
Confidence 6788887 999999999999986 677788899999999999999999999999999 99999999887766653
Q ss_pred ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEE
Q psy3710 227 GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298 (424)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd 298 (424)
.+..++++|++..++. |+.|+.|++||+.++. ....+.+|...|++++|+|+|++|++++.|+. |++|+
T Consensus 286 ~~~~~~~s~~g~~l~~-g~~d~~i~vwd~~~~~-~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~-v~vW~ 354 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFA-GYNDYTINVWDVLKGS-RVSILFGHENRVSTLRVSPDGTAFCSGSWDHT-LRVWA 354 (354)
T ss_dssp CEEEEEECTTSSEEEE-EETTSCEEEEETTTCS-EEEEECCCSSCEEEEEECTTSSCEEEEETTSE-EEEEC
T ss_pred ceeEEEEeCCCCEEEE-EECCCcEEEEECCCCc-eEEEEECCCCcEEEEEECCCCCEEEEEcCCCC-EEecC
Confidence 3567889998887665 9999999999998766 35567799999999999999999999999999 99996
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-43 Score=343.97 Aligned_cols=353 Identities=11% Similarity=0.081 Sum_probs=258.9
Q ss_pred cccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEE
Q psy3710 7 STYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIW 85 (424)
Q Consensus 7 ~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iw 85 (424)
..|...|.+++|+| |++|++++.++ |++||+++++.+.... +.+.|.+++|+|+++++++.+ .|++|++|
T Consensus 55 ~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs-------~dg~V~lw 125 (902)
T 2oaj_A 55 LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGL-------QNGSMIVY 125 (902)
T ss_dssp CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEE-------TTSCEEEE
T ss_pred cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEc-------CCCcEEEE
Confidence 35888999999999 88999998888 9999999887765554 567899999999999999888 58999999
Q ss_pred ECCCCcEEE-E----------Ee-ecCCeEEEEecCCc-eEEEe---eccEEEEeecCCCceeEEEeeCC----------
Q psy3710 86 DDLKKQVVI-C----------LE-FNAPVKGVRLRRDK-IVVVL---EGLIKVYTFIQCPQQLHVFETNP---------- 139 (424)
Q Consensus 86 d~~~~~~~~-~----------~~-~~~~v~~~~~~~~~-~~~~~---~~~i~v~~~~~~~~~~~~~~~~~---------- 139 (424)
|+++++... . +. |.++|.+++|+|++ ..+++ |+.| +||++ ..+.+..+..+.
T Consensus 126 d~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~-~~~~~~~~~~~~~~g~~~~~~~ 203 (902)
T 2oaj_A 126 DIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV-ENEIKQSFIYELPPFAPGGDFS 203 (902)
T ss_dssp ETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT-TTEEEEEECCCBCTTCCCSTTC
T ss_pred ECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC-CCceEEEEecccCCcCCCcccc
Confidence 999887641 1 12 67899999999974 33433 8999 99997 677777776551
Q ss_pred ------CCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCc--cc---cc-------------ccCCeEEEEEc-
Q psy3710 140 ------NPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL--DI---AA-------------HEAPLSCIALN- 194 (424)
Q Consensus 140 ------~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~--~~---~~-------------~~~~v~~~~~~- 194 (424)
+...+.+++|+|++++|++ |+.||.|++||++++ +.+. .+ .. |...|.+++|+
T Consensus 204 ~~~~~~h~~~V~~v~fspdg~~las-gs~Dg~i~lWd~~~g-~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~ 281 (902)
T 2oaj_A 204 EKTNEKRTPKVIQSLYHPNSLHIIT-IHEDNSLVFWDANSG-HMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMC 281 (902)
T ss_dssp CCTTSCBCCCEEEEEECTTSSEEEE-EETTCCEEEEETTTC-CEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEE
T ss_pred cccccccCCCeEEEEEcCCCCEEEE-EECCCeEEEEECCCC-cEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEe
Confidence 1144889999999999998 999999999999876 3322 11 11 34578999995
Q ss_pred ---cCC-CEEEEEecC-----CcEEEEEE---------------------------------------------------
Q psy3710 195 ---QTG-TRLATASYK-----GTLIRVFD--------------------------------------------------- 214 (424)
Q Consensus 195 ---~~~-~~l~~~~~d-----~~~i~iwd--------------------------------------------------- 214 (424)
|++ ..+++++.+ .. +.+|+
T Consensus 282 ~~~pd~~~ll~sg~~~~~~~~~~-v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g 360 (902)
T 2oaj_A 282 ENNPEYTSLLISHKSISRGDNQS-LTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAG 360 (902)
T ss_dssp CSSTTEEEEEEEEECSTTSSCCC-EEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHH
T ss_pred cCCCCCCEEEEeCCCCCCCCCce-EEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCC
Confidence 332 345555443 13 55554
Q ss_pred --------------------CCCcceeeE-------------------E----------------------ecc---eee
Q psy3710 215 --------------------TGSGQKLNE-------------------L----------------------RRG---LCV 230 (424)
Q Consensus 215 --------------------~~~~~~~~~-------------------~----------------------~~~---~~~ 230 (424)
+.++..... + .++ +..
T Consensus 361 ~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~s 440 (902)
T 2oaj_A 361 CHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQ 440 (902)
T ss_dssp TBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCC
T ss_pred CCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCc
Confidence 332211110 0 000 011
Q ss_pred eeecCCCCeEEEEeecCCeEEEEeCCCCCCCC-eee---------ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 231 LCPNSNNSLLAFPGRKSGHVHLVDLADPERPP-LDI---------AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 231 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~-~~~---------~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
++++|++ .++++|+.|++|++||+.++.... ..+ .+|...|.+++|+||+++||+|+.|++ |+|||+.
T Consensus 441 v~~spdg-~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dgt-V~lwd~~ 518 (902)
T 2oaj_A 441 KLPAEYG-TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGD-VVLFKYE 518 (902)
T ss_dssp CCCCSEE-EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSC-EEEEEEE
T ss_pred ccccccC-cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcE-EEEEEec
Confidence 2334544 456679999999999998874211 111 178999999999999999999999999 9999997
Q ss_pred CCc---------------------------------------------eee------------eeccCCcEEEEEeCCCc
Q psy3710 301 SGQ---------------------------------------------KLN------------ELRRDSSYLCVSSDHGT 323 (424)
Q Consensus 301 ~~~---------------------------------------------~~~------------~~~~~~~~l~~~~~d~~ 323 (424)
+++ ++. .|+|+| +||+|+.|++
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~t 597 (902)
T 2oaj_A 519 VNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGS 597 (902)
T ss_dssp ECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSE
T ss_pred CccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCc
Confidence 652 122 267899 9999999999
Q ss_pred EEEEEccccccccccccceeeeccCccccCCceeeEE-eecCCCceEEEEe-----cCC---CeEEEEeccCcEEEEEe
Q psy3710 324 VHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKF-QIPSDPPCICAFG-----ADS---NSIIVICADGSYYKFMF 393 (424)
Q Consensus 324 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s-----~~~---~~l~~~~~dg~v~~~~~ 393 (424)
|++||++++..+.+... ..+ ..|.+.|++++|+ ||| ++|++|+.||+|++|++
T Consensus 598 v~lwd~~~~~~~~~~~~-----------------~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 598 LMLIDRRGPAIIYMENI-----------------REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEEETTTTEEEEEEEG-----------------GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred EEEEECCCCeEEEEeeh-----------------hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 99999987554321000 001 2466789999999 885 89999999999999999
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-42 Score=300.84 Aligned_cols=281 Identities=16% Similarity=0.212 Sum_probs=244.9
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEE
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVM 83 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~ 83 (424)
++.+|.+.|++++|+|+|++|++|+.++ |++|+..+++.......|...|..++|+|+++++++++ .|+.|+
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-------~d~~i~ 90 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS-------DDKTLK 90 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTSEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEEC-------CCCEEE
Confidence 4789999999999999999999999888 99999988887777777899999999999999999988 689999
Q ss_pred EEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEe
Q psy3710 84 IWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFP 159 (424)
Q Consensus 84 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (424)
+||+++++.+..+. |...|.+++|+|++.++++ |+.|++||++ .++.+..+..|..+ +.+++++|+++++++
T Consensus 91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~- 166 (312)
T 4ery_A 91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDP--VSAVHFNRDGSLIVS- 166 (312)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-TCCEEEEECCCSSC--EEEEEECTTSSEEEE-
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCEEEEEecCCCCc--EEEEEEcCCCCEEEE-
Confidence 99999999999888 8899999999999977775 8999999997 77777888777644 888999999999998
Q ss_pred eccCCeEEEEeCCCCCCCCcc-cccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecce-----eeeee
Q psy3710 160 GRKSGHVHLVDLADPERPPLD-IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGL-----CVLCP 233 (424)
Q Consensus 160 ~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~-----~~~~~ 233 (424)
|+.||.|++||++++ +.... ...+..++..++|+|++++|++++.|+. |++||+++++.+..+..+. ....+
T Consensus 167 ~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
T 4ery_A 167 SSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCLKTYTGHKNEKYCIFANF 244 (312)
T ss_dssp EETTSCEEEEETTTC-CEEEEECCSSCCCEEEEEECTTSSEEEEEETTTE-EEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred EeCCCcEEEEECCCC-ceeeEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence 999999999999986 43333 3456778999999999999999999999 9999999999888887552 22345
Q ss_pred cCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEECC
Q psy3710 234 NSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS--YKGTLIRVFDTG 300 (424)
Q Consensus 234 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~~i~iwd~~ 300 (424)
.+.+..++++|+.||.|++||+.+++ ....+.+|...|.+++|+|+++++++++ .|+. |++|+.+
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~-i~~W~~d 311 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQTKE-IVQKLQGHTDVVISTACHPTENIIASAALENDKT-IKLWKSD 311 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETTTCC-EEEEECCCSSCEEEEEECSSSSEEEEEECTTTCC-EEEEECC
T ss_pred EeCCCcEEEEECCCCEEEEEECCCch-hhhhhhccCCcEEEEeecCcCCceEEEEccCCcc-EEEecCC
Confidence 55566677779999999999998865 4567789999999999999999999997 6899 9999864
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-43 Score=306.87 Aligned_cols=282 Identities=13% Similarity=0.110 Sum_probs=225.5
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCeEEEEeCCcC-------cc----cccccccCCCeeeEEEeccCceEEEEeCCcC
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPL-------KE----KERQDFTDGGLGHVEMLFRCNYLALVGGGTH 74 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~-------~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 74 (424)
...|...|.+++|+|||++|++++++.+++||.... .. ......+...|.+++|++++ .+++++
T Consensus 26 ~~~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s---- 100 (344)
T 4gqb_B 26 PACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVAS---- 100 (344)
T ss_dssp CSSCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEE----
T ss_pred cccccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEE----
Confidence 456888899999999999999998766888873211 00 11111246779999999985 566666
Q ss_pred CCcCCCeEEEEECCCCcEEEEE-----eecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEE
Q psy3710 75 PKYPNNRVMIWDDLKKQVVICL-----EFNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCV 146 (424)
Q Consensus 75 ~~~~d~~i~iwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 146 (424)
.|++|+|||+++++.+... .|.+.|.+++|+|++.++++ |+.|++||+. +++.+..+.+|... +.+
T Consensus 101 ---~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~-~~~~~~~~~~h~~~--V~~ 174 (344)
T 4gqb_B 101 ---DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA-QQVVLSSYRAHAAQ--VTC 174 (344)
T ss_dssp ---TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEECCCSSC--EEE
T ss_pred ---CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEEEcCcCCc--eEE
Confidence 5899999999988754433 27889999999999988876 8999999997 78888889888754 888
Q ss_pred EeecCCCCeEEEeeccCCeEEEEeCCCCCCCCccc--ccccCCeEEEEEccC-CCEEEEEecCCcEEEEEECCCcceeeE
Q psy3710 147 LCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDI--AAHEAPLSCIALNQT-GTRLATASYKGTLIRVFDTGSGQKLNE 223 (424)
Q Consensus 147 ~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd~~~~~~~~~ 223 (424)
++|++++..++++|+.|+.|++||++++ +....+ ..|...+.+++|+|+ +++|++|+.|+. |++||+++++++..
T Consensus 175 ~~~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~-v~~wd~~~~~~~~~ 252 (344)
T 4gqb_B 175 VAASPHKDSVFLSCSEDNRILLWDTRCP-KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT-VSLVDTKSTSCVLS 252 (344)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTSS-SCEEECC----CCCEEEEEECSSCTTEEEEEETTSE-EEEEESCC--CCEE
T ss_pred EEecCCCCCceeeecccccccccccccc-ceeeeeecceeeccceeeeecCCCCcceEEeccCCc-EEEEECCCCcEEEE
Confidence 9999998654444999999999999986 555444 355667999999995 568899999999 99999999999998
Q ss_pred Eecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEEC
Q psy3710 224 LRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT-RLATASYKGTLIRVFDT 299 (424)
Q Consensus 224 ~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~~i~iwd~ 299 (424)
+..+ +..++|+|++..++++|+.|++|++||+.+++ ...+.+|.+.|++++|+|+++ +|++++.|++ |++|++
T Consensus 253 ~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~--~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~-v~~w~v 329 (344)
T 4gqb_B 253 SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE--LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQ-VVHHVV 329 (344)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE--EEEECCCSSCEEEEEECSSSTTEEEEEETTSC-EEEEEC
T ss_pred EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc--EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCe-EEEEEC
Confidence 8865 77899999998888889999999999998865 345679999999999999886 5678999999 999999
Q ss_pred CCCc
Q psy3710 300 GSGQ 303 (424)
Q Consensus 300 ~~~~ 303 (424)
.+..
T Consensus 330 ~~~~ 333 (344)
T 4gqb_B 330 PTEP 333 (344)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-43 Score=310.27 Aligned_cols=282 Identities=13% Similarity=0.183 Sum_probs=222.7
Q ss_pred ccccCCceEEEEECCCCCeeEeecC------Ce-EEEEeCCcCccccc----ccccCCCeeeEEEeccCceEEEEeCCcC
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGME------DG-FRIYNCDPLKEKER----QDFTDGGLGHVEMLFRCNYLALVGGGTH 74 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~------~~-i~iw~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 74 (424)
...|+..|++++|||||++||+|+. ++ |++|+..++..... ...|...|.+++|+|++..+ +++
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s---- 112 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VAS---- 112 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEE----
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEE----
Confidence 4579999999999999999999987 56 89998876654222 23477889999999998655 445
Q ss_pred CCcCCCeEEEEECCCCcEEEEE-----eecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEE
Q psy3710 75 PKYPNNRVMIWDDLKKQVVICL-----EFNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCV 146 (424)
Q Consensus 75 ~~~~d~~i~iwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 146 (424)
.|++|++||+.+++..... .|...|.+++|+|++.++++ |+.|++||+. +++.+..+..|... +.+
T Consensus 113 ---~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~-~~~~~~~~~~h~~~--v~~ 186 (357)
T 4g56_B 113 ---DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS-QKAVLKSYNAHSSE--VNC 186 (357)
T ss_dssp ---TTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-TTEEEEEECCCSSC--EEE
T ss_pred ---CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEEEcCCCCC--EEE
Confidence 4899999999888765322 36889999999999987775 8999999997 78888888887754 888
Q ss_pred EeecCCCCeEEEeeccCCeEEEEeCCCCCCCCc--ccccccCCeEEEEEccC-CCEEEEEecCCcEEEEEECCCcceeeE
Q psy3710 147 LCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL--DIAAHEAPLSCIALNQT-GTRLATASYKGTLIRVFDTGSGQKLNE 223 (424)
Q Consensus 147 ~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd~~~~~~~~~ 223 (424)
+++++++..++++++.||.|++||++++ ++.. ....|...+.+++|+|+ +.+|++++.|+. |++||+++++.+..
T Consensus 187 v~~s~~~~~~~~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~-i~~wd~~~~~~~~~ 264 (357)
T 4g56_B 187 VAACPGKDTIFLSCGEDGRILLWDTRKP-KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN-VSLVNIKNPDSAQT 264 (357)
T ss_dssp EEECTTCSSCEEEEETTSCEEECCTTSS-SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSC-EEEEESSCGGGCEE
T ss_pred EEEccCCCceeeeeccCCceEEEECCCC-ceeeeeeeccccccccchhhhhcccceEEEeecccc-eeEEECCCCcEeEE
Confidence 9999988644434999999999999986 4433 34467788999999997 467889999999 99999999998888
Q ss_pred Eecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEC
Q psy3710 224 LRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ-TGTRLATASYKGTLIRVFDT 299 (424)
Q Consensus 224 ~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~~i~iwd~ 299 (424)
+..+ +..++++|++..++++|+.|++|++||+++++. ....+|.+.|++++|+| ++++|++++.|++ |++|++
T Consensus 265 ~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~--~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~-v~iW~~ 341 (357)
T 4g56_B 265 SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV--FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHK-VLHHHL 341 (357)
T ss_dssp ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE--EEECCCSSCEEEEEECSSSTTEEEEEETTSC-EEEEEC
T ss_pred EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE--eEECCCCCCEEEEEEeCCCCCEEEEEcCCCe-EEEEEC
Confidence 8754 788999999988888899999999999988653 23348999999999998 7999999999999 999999
Q ss_pred CCCc
Q psy3710 300 GSGQ 303 (424)
Q Consensus 300 ~~~~ 303 (424)
.+..
T Consensus 342 ~~~~ 345 (357)
T 4g56_B 342 PSEG 345 (357)
T ss_dssp C---
T ss_pred CCCC
Confidence 7643
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-43 Score=317.73 Aligned_cols=339 Identities=15% Similarity=0.195 Sum_probs=264.7
Q ss_pred cccCCceEEEEECCCCC-eeEeecCCe-EEEEeC----CcCc------ccccccc----------cCCCeeeEEEeccCc
Q psy3710 7 STYKNGLLYAGFNQDQG-CFACGMEDG-FRIYNC----DPLK------EKERQDF----------TDGGLGHVEMLFRCN 64 (424)
Q Consensus 7 ~~h~~~V~~~~~s~~g~-~la~g~~~~-i~iw~~----~~~~------~~~~~~~----------~~~~i~~~~~~~~~~ 64 (424)
..|.+.|++++|+|+|+ +||+|+.++ |++|++ .+++ ....... |.+.|.+++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34669999999999999 999999888 999999 7776 2222222 567999999999999
Q ss_pred eEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCC
Q psy3710 65 YLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPN 140 (424)
Q Consensus 65 ~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~ 140 (424)
++++++ .|+.|++|| .+++.+..+. |...|.+++|+|++..+++ ++.|++||+. .++.+..+..+..
T Consensus 122 ~l~~~~-------~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~ 192 (425)
T 1r5m_A 122 SIVTGV-------ENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI-SGTVMQHFELKET 192 (425)
T ss_dssp EEEEEE-------TTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT-TTEEEEEECCC--
T ss_pred EEEEEe-------CCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC-CCcEEEEeecccc
Confidence 999988 589999999 6788888887 8999999999999976665 8999999996 6777777766553
Q ss_pred CCe-------------eEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCC
Q psy3710 141 PKG-------------LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKG 207 (424)
Q Consensus 141 ~~~-------------~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 207 (424)
... +.++.+++++. +++ ++.+|.|++||+.++ .....+..|...|.+++|+|++++|++++.|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~i~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 269 (425)
T 1r5m_A 193 GGSSINAENHSGDGSLGVDVEWVDDDK-FVI-PGPKGAIFVYQITEK-TPTGKLIGHHGPISVLEFNDTNKLLLSASDDG 269 (425)
T ss_dssp -------------CCCBSCCEEEETTE-EEE-ECGGGCEEEEETTCS-SCSEEECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred CccceeeccccCCcceeeEEEEcCCCE-EEE-EcCCCeEEEEEcCCC-ceeeeeccCCCceEEEEECCCCCEEEEEcCCC
Confidence 311 55677777754 555 899999999999986 77778889999999999999999999999999
Q ss_pred cEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEE
Q psy3710 208 TLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRL 284 (424)
Q Consensus 208 ~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 284 (424)
. |++||+++++.+..+..+ +..++++|++ ++++++.|+.|++||+++++ ....+..|...|.+++|+|++++|
T Consensus 270 ~-i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l 345 (425)
T 1r5m_A 270 T-LRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNT-LLALSIVDGVPIFAGRISQDGQKY 345 (425)
T ss_dssp C-EEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTE-EEEEEECTTCCEEEEEECTTSSEE
T ss_pred E-EEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCc-EeEecccCCccEEEEEEcCCCCEE
Confidence 9 999999999888887643 7788999988 66679999999999998865 455667899999999999999999
Q ss_pred EEEeCCCcEEEEEECCCCceeeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecC
Q psy3710 285 ATASYKGTLIRVFDTGSGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPS 364 (424)
Q Consensus 285 ~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (424)
++++.|+. |++||+++++..... ..+..++.+. ....+ .+..+..|.
T Consensus 346 ~~~~~dg~-i~i~~~~~~~~~~~~-------~~~~~~~~~~---~~~~~----------------------~~~~~~~~~ 392 (425)
T 1r5m_A 346 AVAFMDGQ-VNVYDLKKLNSKSRS-------LYGNRDGILN---PLPIP----------------------LYASYQSSQ 392 (425)
T ss_dssp EEEETTSC-EEEEECHHHHC------------------------CEECC----------------------EEEEECCTT
T ss_pred EEEECCCe-EEEEECCCCccceee-------eecccccccC---cccch----------------------hhhhhcCcc
Confidence 99999999 999999876532211 1122222211 11100 122344554
Q ss_pred C--CceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 365 D--PPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 365 ~--~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
. .+..++|+|++++|++++.||.|++|+++
T Consensus 393 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 393 DNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred cCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 4 89999999999999999999999999985
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=317.83 Aligned_cols=288 Identities=18% Similarity=0.247 Sum_probs=240.5
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEE
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVM 83 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~ 83 (424)
++.+|.+.|++++|+|++++|++|+.|+ |+|||+.+++.......|...|..++|+|+++++++++ .|+.++
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~-------~d~~v~ 133 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGG-------LDSACS 133 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECC-------SSSCCE
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEee-------CCCcEE
Confidence 4889999999999999999999999999 99999999888777778899999999999999998887 689999
Q ss_pred EEECCCCc-------EEEEEe-ecCCeEEEEecCCc-e-EEEe--eccEEEEeecCCCceeEEEee---CCCCCeeEEEe
Q psy3710 84 IWDDLKKQ-------VVICLE-FNAPVKGVRLRRDK-I-VVVL--EGLIKVYTFIQCPQQLHVFET---NPNPKGLCVLC 148 (424)
Q Consensus 84 iwd~~~~~-------~~~~~~-~~~~v~~~~~~~~~-~-~~~~--~~~i~v~~~~~~~~~~~~~~~---~~~~~~~~~~~ 148 (424)
+||+.+.. ....+. |.+.+.++.|.|+. . ++.. |+.|++||+. +++.+..+.. ..+...+.+++
T Consensus 134 iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~-~~~~~~~~~~~~~~~h~~~v~~~~ 212 (380)
T 3iz6_a 134 IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT-TGQRISIFGSEFPSGHTADVLSLS 212 (380)
T ss_dssp EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTT-TCCEEEEECCCSSSSCCSCEEEEE
T ss_pred EEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcC-CCcEEEEeecccCCCCccCeEEEE
Confidence 99986532 223333 78889999999864 2 3333 9999999997 6666666522 12234588888
Q ss_pred ecC-CCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc
Q psy3710 149 PNS-NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG 227 (424)
Q Consensus 149 ~~~-~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~ 227 (424)
+++ ++.++++ |+.|+.|++||++.....+..+.+|.+.|.+++|+|++++|++++.|+. |++||+++++.+..+..+
T Consensus 213 ~~~~~~~~l~s-gs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-i~lwd~~~~~~~~~~~~~ 290 (380)
T 3iz6_a 213 INSLNANMFIS-GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT-CRLFDMRTGHQLQVYNRE 290 (380)
T ss_dssp ECSSSCCEEEE-EETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC-EEEEETTTTEEEEEECCC
T ss_pred eecCCCCEEEE-EECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe-EEEEECCCCcEEEEeccc
Confidence 876 6777777 9999999999998655778889999999999999999999999999999 999999999888777542
Q ss_pred ----------eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCe---eeccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q psy3710 228 ----------LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL---DIAAHEAPLSCIALNQTGTRLATASYKGTLI 294 (424)
Q Consensus 228 ----------~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i 294 (424)
+..++++|++..++. |+.||.|++||+..++.... ...+|.+.|++++|+|+|++|++|+.|++ |
T Consensus 291 ~~~~~~~~~~v~~~~~s~~g~~l~~-g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~-i 368 (380)
T 3iz6_a 291 PDRNDNELPIVTSVAFSISGRLLFA-GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKN-L 368 (380)
T ss_dssp CSSSCCSSCSCSEEEECSSSSEEEE-ECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSC-E
T ss_pred ccccccccCceEEEEECCCCCEEEE-EECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCC-E
Confidence 567899999887776 89999999999987663221 12579999999999999999999999999 9
Q ss_pred EEEECCCCce
Q psy3710 295 RVFDTGSGQK 304 (424)
Q Consensus 295 ~iwd~~~~~~ 304 (424)
++|++...+.
T Consensus 369 ~iW~~~~~~~ 378 (380)
T 3iz6_a 369 KIWAFSGHRK 378 (380)
T ss_dssp EEEECCSSSS
T ss_pred EEEecCCCcc
Confidence 9999987643
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=314.44 Aligned_cols=270 Identities=14% Similarity=0.204 Sum_probs=235.3
Q ss_pred ccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEE
Q psy3710 47 QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKV 122 (424)
Q Consensus 47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v 122 (424)
...|.++|.+++|+|+++.+++++ .|++|++||+.+++....+. |...|.+++|+|++.++++ |+.|++
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s-------~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSAS-------EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL 176 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEE-------SSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEe-------CCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 456889999999999999999988 68999999999999999888 8999999999999987775 899999
Q ss_pred EeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEE
Q psy3710 123 YTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLAT 202 (424)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 202 (424)
||+. ..+.+..+..|... +.+++|+|++.++++ |+.|+.|++||++++ ..+..+.+|...|.+++|+|++.+|++
T Consensus 177 wd~~-~~~~~~~~~~h~~~--V~~v~~~p~~~~l~s-~s~D~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~~g~~l~s 251 (410)
T 1vyh_C 177 WDFQ-GFECIRTMHGHDHN--VSSVSIMPNGDHIVS-ASRDKTIKMWEVQTG-YCVKTFTGHREWVRMVRPNQDGTLIAS 251 (410)
T ss_dssp EETT-SSCEEECCCCCSSC--EEEEEECSSSSEEEE-EETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EeCC-CCceeEEEcCCCCC--EEEEEEeCCCCEEEE-EeCCCeEEEEECCCC-cEEEEEeCCCccEEEEEECCCCCEEEE
Confidence 9996 77777878777644 889999999999998 999999999999987 677888999999999999999999999
Q ss_pred EecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCC--
Q psy3710 203 ASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT-- 280 (424)
Q Consensus 203 ~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-- 280 (424)
++.|+. |++||++++++...+. +|...|.+++|+|+
T Consensus 252 ~s~D~~-v~vwd~~~~~~~~~~~-----------------------------------------~h~~~v~~~~~~~~~~ 289 (410)
T 1vyh_C 252 CSNDQT-VRVWVVATKECKAELR-----------------------------------------EHRHVVECISWAPESS 289 (410)
T ss_dssp EETTSC-EEEEETTTCCEEEEEC-----------------------------------------CCSSCEEEEEECCSCG
T ss_pred EcCCCe-EEEEECCCCceeeEec-----------------------------------------CCCceEEEEEEcCccc
Confidence 999999 9999999887766554 34445555555553
Q ss_pred ------------------CCEEEEEeCCCcEEEEEECCCCceeee------------eccCCcEEEEEeCCCcEEEEEcc
Q psy3710 281 ------------------GTRLATASYKGTLIRVFDTGSGQKLNE------------LRRDSSYLCVSSDHGTVHVFSVD 330 (424)
Q Consensus 281 ------------------~~~l~~~~~d~~~i~iwd~~~~~~~~~------------~~~~~~~l~~~~~d~~i~iw~~~ 330 (424)
+.+|++|+.|+. |++||+++++++.. |+|++++|++++.|+.|++||+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~-i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 290 YSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368 (410)
T ss_dssp GGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred ccchhhhccccccccCCCCCEEEEEeCCCe-EEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 779999999999 99999999887764 46789999999999999999998
Q ss_pred ccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEe
Q psy3710 331 EAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMF 393 (424)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~ 393 (424)
+++++.. +..|.+.|+.++|+|++++|++|+.||+|++|++
T Consensus 369 ~~~~~~~----------------------~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 369 NKRCMKT----------------------LNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TSCCCEE----------------------EECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CCceEEE----------------------EcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 8665432 4557788999999999999999999999999986
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-42 Score=303.42 Aligned_cols=270 Identities=13% Similarity=0.151 Sum_probs=229.5
Q ss_pred cccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEE
Q psy3710 46 RQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIK 121 (424)
Q Consensus 46 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~ 121 (424)
....|.+.|.+++|+|+++++++++ .|++|++||..+++.+..+. |...|.+++|+|++.++++ |+.++
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s-------~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSAS-------QDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEE-------TTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEe-------CCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence 3556899999999999999999998 68999999999999998888 7889999999999988876 89999
Q ss_pred EEeecCCC---ceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCC
Q psy3710 122 VYTFIQCP---QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT 198 (424)
Q Consensus 122 v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 198 (424)
+|++.... .....+..|... +.++.|++++. +++ ++.|+.|++||++++ .....+.+|.+.|.+++|+|+++
T Consensus 123 iw~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~-l~s-~s~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~~~~ 197 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGHTGY--LSCCRFLDDNQ-IVT-SSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR 197 (340)
T ss_dssp EEETTTCSBSCEEEEEEECCSSC--EEEEEEEETTE-EEE-EETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSS
T ss_pred EEECccCCCcceeEEEecCCCcc--EEEEEECCCCc-EEE-EECCCcEEEEECCCC-cEEEEEcCCCCceEEEEECCCCC
Confidence 99986322 344556666644 77788887775 666 899999999999986 67778889999999999999999
Q ss_pred EEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEc
Q psy3710 199 RLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALN 278 (424)
Q Consensus 199 ~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 278 (424)
++++++.|+. |++||++++++...+. +|...|++++|+
T Consensus 198 ~l~sg~~d~~-v~~wd~~~~~~~~~~~-----------------------------------------~h~~~v~~v~~~ 235 (340)
T 1got_B 198 LFVSGACDAS-AKLWDVREGMCRQTFT-----------------------------------------GHESDINAICFF 235 (340)
T ss_dssp EEEEEETTSC-EEEEETTTCSEEEEEC-----------------------------------------CCSSCEEEEEEC
T ss_pred EEEEEeCCCc-EEEEECCCCeeEEEEc-----------------------------------------CCcCCEEEEEEc
Confidence 9999999999 9999998877654443 678889999999
Q ss_pred CCCCEEEEEeCCCcEEEEEECCCCceee--------------eeccCCcEEEEEeCCCcEEEEEccccccccccccceee
Q psy3710 279 QTGTRLATASYKGTLIRVFDTGSGQKLN--------------ELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASA 344 (424)
Q Consensus 279 ~~~~~l~~~~~d~~~i~iwd~~~~~~~~--------------~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 344 (424)
|++++|++++.|+. |++||+++++.+. .|+|++++|++|+.|+.|++||+.+++.+.
T Consensus 236 p~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~-------- 306 (340)
T 1got_B 236 PNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG-------- 306 (340)
T ss_dssp TTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--------
T ss_pred CCCCEEEEEcCCCc-EEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEee--------
Confidence 99999999999999 9999998776543 256889999999999999999988765432
Q ss_pred eccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEE
Q psy3710 345 SFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFM 392 (424)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~ 392 (424)
.+..|.++|..++|+|++++|++|+.||.|++|+
T Consensus 307 --------------~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 307 --------------VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp --------------EEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred --------------EeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 2456778899999999999999999999999996
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=301.85 Aligned_cols=271 Identities=18% Similarity=0.289 Sum_probs=223.2
Q ss_pred ccccCCCeeeEEEecc----CceEEEEeCCcCCCcCCCeEEEEECCCCcEEE--EEe-ecCCeEEEEecCCceEEEe---
Q psy3710 47 QDFTDGGLGHVEMLFR----CNYLALVGGGTHPKYPNNRVMIWDDLKKQVVI--CLE-FNAPVKGVRLRRDKIVVVL--- 116 (424)
Q Consensus 47 ~~~~~~~i~~~~~~~~----~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~--~~~-~~~~v~~~~~~~~~~~~~~--- 116 (424)
...|.+.|.+++|+++ ++.+++++ .|++|++|++.+++... .+. |...|.++++++++.++++
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs-------~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~ 100 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGS-------LDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL 100 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEE-------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEc-------CCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC
Confidence 3458999999999885 45787777 68999999998776543 444 7889999999999987776
Q ss_pred eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccC
Q psy3710 117 EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT 196 (424)
Q Consensus 117 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 196 (424)
|+.|++||+. +++.+..+..+.. .+.+++|+|++++|++ |+.+|.|++|+++++ .....+..|...|.+++|+|+
T Consensus 101 D~~i~lWd~~-~~~~~~~~~~~~~--~~~~~~~spdg~~l~~-g~~dg~v~i~~~~~~-~~~~~~~~~~~~v~~~~~spd 175 (321)
T 3ow8_A 101 DAHIRLWDLE-NGKQIKSIDAGPV--DAWTLAFSPDSQYLAT-GTHVGKVNIFGVESG-KKEYSLDTRGKFILSIAYSPD 175 (321)
T ss_dssp TSEEEEEETT-TTEEEEEEECCTT--CCCCEEECTTSSEEEE-ECTTSEEEEEETTTC-SEEEEEECSSSCEEEEEECTT
T ss_pred CCcEEEEECC-CCCEEEEEeCCCc--cEEEEEECCCCCEEEE-EcCCCcEEEEEcCCC-ceeEEecCCCceEEEEEECCC
Confidence 8999999996 7778888876654 4667899999999998 999999999999986 666778889999999999999
Q ss_pred CCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEE
Q psy3710 197 GTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIA 276 (424)
Q Consensus 197 ~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 276 (424)
+++|++++.|+. |++||+++++.+..+. +|..+|.+++
T Consensus 176 g~~lasg~~dg~-i~iwd~~~~~~~~~~~-----------------------------------------~h~~~v~~l~ 213 (321)
T 3ow8_A 176 GKYLASGAIDGI-INIFDIATGKLLHTLE-----------------------------------------GHAMPIRSLT 213 (321)
T ss_dssp SSEEEEEETTSC-EEEEETTTTEEEEEEC-----------------------------------------CCSSCCCEEE
T ss_pred CCEEEEEcCCCe-EEEEECCCCcEEEEEc-----------------------------------------ccCCceeEEE
Confidence 999999999999 9999999887665543 5777788888
Q ss_pred EcCCCCEEEEEeCCCcEEEEEECCCCceeee------------eccCCcEEEEEeCCCcEEEEEccccccccccccceee
Q psy3710 277 LNQTGTRLATASYKGTLIRVFDTGSGQKLNE------------LRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASA 344 (424)
Q Consensus 277 ~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~------------~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 344 (424)
|+|++++|++++.|+. |++||+++++.+.. |+|++++|++++.|++|++||+.+++++..
T Consensus 214 ~spd~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~------- 285 (321)
T 3ow8_A 214 FSPDSQLLVTASDDGY-IKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT------- 285 (321)
T ss_dssp ECTTSCEEEEECTTSC-EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-------
T ss_pred EcCCCCEEEEEcCCCe-EEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEE-------
Confidence 8888888888888888 88888887765543 457888888888888888888887665432
Q ss_pred eccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 345 SFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
+..|.+.+..++|+|++++|++++.||.|++|+++
T Consensus 286 ---------------~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 286 ---------------FFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ---------------ECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ---------------EcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 33456778899999999999999999999999974
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-43 Score=313.12 Aligned_cols=292 Identities=18% Similarity=0.215 Sum_probs=246.8
Q ss_pred CeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCe
Q psy3710 80 NRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSL 155 (424)
Q Consensus 80 ~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (424)
..+..|+..+..+.+.+. |.+.|.+++|+|++.++++ |+.|++||+. +++....+..|... +.+++|+|++++
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~-~~~~~~~~~~h~~~--v~~~~~s~~g~~ 122 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNAL-TSQKTHAIKLHCPW--VMECAFAPNGQS 122 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETT-TTEEEEEEECCCTT--CCCCEECTTSSE
T ss_pred ccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCccceEEecCCCC--EEEEEECCCCCE
Confidence 445567777777888887 8999999999999977776 8999999996 77888888887755 677889999999
Q ss_pred EEEeeccCCeEEEEeCCCCC------CCCcccccccCCeEEEEEccCC-CEEEEEecCCcEEEEEECCCcceeeEEe---
Q psy3710 156 LAFPGRKSGHVHLVDLADPE------RPPLDIAAHEAPLSCIALNQTG-TRLATASYKGTLIRVFDTGSGQKLNELR--- 225 (424)
Q Consensus 156 l~~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~~i~iwd~~~~~~~~~~~--- 225 (424)
+++ |+.|+.+++||+.... .....+.+|.+.|.++.|+|++ ..|++++.|+. |++||+++++.+..+.
T Consensus 123 las-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~-i~~wd~~~~~~~~~~~~~~ 200 (380)
T 3iz6_a 123 VAC-GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT-CVLWDVTTGQRISIFGSEF 200 (380)
T ss_dssp EEE-CCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSC-EEEECTTTCCEEEEECCCS
T ss_pred EEE-eeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCc-EEEEEcCCCcEEEEeeccc
Confidence 998 9999999999997531 2344678999999999999974 57999999999 9999999999887763
Q ss_pred --c---ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 226 --R---GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 226 --~---~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
. .+..+++++.+..++++|+.|+.|++||++........+.+|...|++++|+|++++|++++.|++ |++||++
T Consensus 201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-i~lwd~~ 279 (380)
T 3iz6_a 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT-CRLFDMR 279 (380)
T ss_dssp SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC-EEEEETT
T ss_pred CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe-EEEEECC
Confidence 2 256778888777788889999999999999766677888899999999999999999999999999 9999999
Q ss_pred CCceeee-------------------eccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEe
Q psy3710 301 SGQKLNE-------------------LRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQ 361 (424)
Q Consensus 301 ~~~~~~~-------------------~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (424)
+++.+.. |+|+|++|++|+.||.|++||+..++.+...... ..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~------------------~~ 341 (380)
T 3iz6_a 280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL------------------QN 341 (380)
T ss_dssp TTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS------------------CS
T ss_pred CCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc------------------cC
Confidence 9876543 5689999999999999999999887654332110 12
Q ss_pred ecCCCceEEEEecCCCeEEEEeccCcEEEEEecC
Q psy3710 362 IPSDPPCICAFGADSNSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 362 ~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~ 395 (424)
.|.+.|..++|+|||++|++|+.||+|++|++..
T Consensus 342 ~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 342 SHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp SCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred CCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 4667899999999999999999999999999974
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-42 Score=303.38 Aligned_cols=293 Identities=17% Similarity=0.188 Sum_probs=232.4
Q ss_pred cccccccCC-ceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccc---cccccCCCeeeEEEeccCceEEEEeCCcCCCc
Q psy3710 3 LGTSSTYKN-GLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKE---RQDFTDGGLGHVEMLFRCNYLALVGGGTHPKY 77 (424)
Q Consensus 3 ~~~l~~h~~-~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~ 77 (424)
+.++.+|.+ .|.+++|+|+|++||+|+.|+ |+|||+++..... ....|...|.+++|+|+++++++++
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s------- 80 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS------- 80 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE-------
T ss_pred eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE-------
Confidence 345789988 999999999999999999988 9999988765321 2345889999999999999999998
Q ss_pred CCCeEEEEECCCCc--EEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCC--ceeEEEeeCCCCCeeEEEee
Q psy3710 78 PNNRVMIWDDLKKQ--VVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCP--QQLHVFETNPNPKGLCVLCP 149 (424)
Q Consensus 78 ~d~~i~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 149 (424)
.|+++++|+..++. .+..+. |...|.+++|+|++.++++ |+.|++||+.... ..+..+..|. ..+.+++|
T Consensus 81 ~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~--~~v~~~~~ 158 (345)
T 3fm0_A 81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT--QDVKHVVW 158 (345)
T ss_dssp TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCC--SCEEEEEE
T ss_pred CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcC--CCeEEEEE
Confidence 68999999988764 455666 8899999999999988776 8999999996332 2344555555 44889999
Q ss_pred cCCCCeEEEeeccCCeEEEEeCCCCC-CCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCc----------
Q psy3710 150 NSNNSLLAFPGRKSGHVHLVDLADPE-RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG---------- 218 (424)
Q Consensus 150 ~~~~~~l~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~---------- 218 (424)
+|++++|++ |+.|+.|++||.+.+. .....+.+|...|.+++|+|+|++|++++.|+. |++||....
T Consensus 159 ~p~~~~l~s-~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~~~~~~~~~~ 236 (345)
T 3fm0_A 159 HPSQELLAS-ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQYLPGNEQGVACSG 236 (345)
T ss_dssp CSSSSCEEE-EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEEECTTCTTCCCCC-
T ss_pred CCCCCEEEE-EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe-EEEeccccCCCCccceeec
Confidence 999999998 9999999999998642 134577899999999999999999999999999 999996322
Q ss_pred -----ceeeEEec----ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCC--------eeeccCCCCeEEEEEcCCC
Q psy3710 219 -----QKLNELRR----GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPP--------LDIAAHEAPLSCIALNQTG 281 (424)
Q Consensus 219 -----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~--------~~~~~~~~~v~~~~~~~~~ 281 (424)
+++..+.. .+..+++++++..++. ++.|+.|++|+......+. ....+|...|++++|+|++
T Consensus 237 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s-~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~ 315 (345)
T 3fm0_A 237 SDPSWKCICTLSGFHSRTIYDIAWCQLTGALAT-ACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKE 315 (345)
T ss_dssp --CEEEEEEEECSSCSSCEEEEEECTTTCCEEE-EETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSS
T ss_pred cCCccceeEEecCCCCCcEEEEEEecCCCEEEE-EeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCC
Confidence 22233332 3677889998887665 8899999999987654221 1235799999999999987
Q ss_pred -CEEEEEeCCCcEEEEEECCCCceeeee
Q psy3710 282 -TRLATASYKGTLIRVFDTGSGQKLNEL 308 (424)
Q Consensus 282 -~~l~~~~~d~~~i~iwd~~~~~~~~~~ 308 (424)
.+||+++.||. |++|++.+++.+..+
T Consensus 316 ~~~laS~s~Dg~-v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 316 PGLLASCSDDGE-VAFWKYQRPEGLHHH 342 (345)
T ss_dssp TTEEEEEETTSC-EEEEEECC-------
T ss_pred ceEEEEcCCCCc-EEEEEecCCCCcccc
Confidence 59999999999 999999988766543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-42 Score=298.72 Aligned_cols=282 Identities=14% Similarity=0.127 Sum_probs=236.6
Q ss_pred ccccccCCceEEEEECCCC-CeeEeecCCe-EEEEeCCcCc-----ccccccccCCCeeeEEEeccCceEEEEeCCcCCC
Q psy3710 4 GTSSTYKNGLLYAGFNQDQ-GCFACGMEDG-FRIYNCDPLK-----EKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPK 76 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~g-~~la~g~~~~-i~iw~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 76 (424)
.+|.+|.+.|++++|+|++ ++|++|+.|+ |++|++.... .......|...|..++|+++++++++++
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s------ 84 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS------ 84 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE------
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe------
Confidence 3588999999999999975 8999999998 9999986432 2334566899999999999999999998
Q ss_pred cCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCC
Q psy3710 77 YPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSN 152 (424)
Q Consensus 77 ~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (424)
.|++|++||+.+++.+..+. |...|.+++|+|++.++++ |+.|++||++ ++.+..+..|... +.++.++|.
T Consensus 85 -~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~--~~~~~~~~~h~~~--v~~~~~~~~ 159 (319)
T 3frx_A 85 -WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLATLLGHNDW--VSQVRVVPN 159 (319)
T ss_dssp -TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT--SCEEEEECCCSSC--EEEEEECCC
T ss_pred -CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeEEEEeccCCc--EEEEEEccC
Confidence 68999999999999999888 8999999999999977776 8999999985 5566777777644 777788774
Q ss_pred ------CCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEec
Q psy3710 153 ------NSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR 226 (424)
Q Consensus 153 ------~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~ 226 (424)
+..+++ ++.|+.|++||+++. +....+.+|...|.+++|+|++++|++++.|+. |++||+++++.+..+..
T Consensus 160 ~~~~~~~~~l~s-~~~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~ 236 (319)
T 3frx_A 160 EKADDDSVTIIS-AGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNLAAKKAMYTLSA 236 (319)
T ss_dssp ------CCEEEE-EETTSCEEEEETTTT-EEEEEECCCCSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEEC
T ss_pred CCCCCCccEEEE-EeCCCEEEEEECCcc-hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEecC
Confidence 346776 999999999999875 566678899999999999999999999999999 99999999998888765
Q ss_pred c--eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCC-------CeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy3710 227 G--LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERP-------PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVF 297 (424)
Q Consensus 227 ~--~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iw 297 (424)
+ +..++++|++..++. + .++.+++|++...... ......|...+.+++|+|||++|++|+.|+. |++|
T Consensus 237 ~~~v~~~~~sp~~~~la~-~-~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~-i~vW 313 (319)
T 3frx_A 237 QDEVFSLAFSPNRYWLAA-A-TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV-IRVW 313 (319)
T ss_dssp CSCEEEEEECSSSSEEEE-E-ETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSC-EEEE
T ss_pred CCcEEEEEEcCCCCEEEE-E-cCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCce-EEEE
Confidence 4 778999999887765 3 3566999998764311 1112356778999999999999999999999 9999
Q ss_pred ECCCC
Q psy3710 298 DTGSG 302 (424)
Q Consensus 298 d~~~~ 302 (424)
|+.++
T Consensus 314 d~~t~ 318 (319)
T 3frx_A 314 QVMTA 318 (319)
T ss_dssp EEEEC
T ss_pred EEeec
Confidence 98764
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-42 Score=301.95 Aligned_cols=290 Identities=16% Similarity=0.146 Sum_probs=223.5
Q ss_pred EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEEC-------C-----CCcEEEEEeecC
Q psy3710 33 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDD-------L-----KKQVVICLEFNA 100 (424)
Q Consensus 33 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~-------~-----~~~~~~~~~~~~ 100 (424)
.+.|++.+... ..+...+.+++|+|++..++.++ |+++++||. . .+.....+.+..
T Consensus 16 ~r~w~~~~~~~----~~~~~~v~~~~fs~dG~~l~~~s--------d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (344)
T 4gqb_B 16 AREWNLPPNAP----ACMERQLEAARYRSDGALLLGAS--------SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEA 83 (344)
T ss_dssp -------CCSC----SSCCSEEEEEEECTTSCEEEEEE--------CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESS
T ss_pred ccccCCCCCCc----ccccCCEEEEEECCCCCEEEEEe--------CCceEEeeceeeeeccccccCCcceeeeeeccCC
Confidence 45677655433 22466799999999999998777 455555542 1 122334455778
Q ss_pred CeEEEEecCCceEEEe--eccEEEEeecCCCceeEEE----eeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCC
Q psy3710 101 PVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVF----ETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADP 174 (424)
Q Consensus 101 ~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~ 174 (424)
.|.+++|+|++.+++. ||.|++||+. +++.+..+ .+|. ..+.+++|+|++++|++ |+.|+.|++||+.++
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~~-~~~~~~~~~~~~~~H~--~~V~~v~~spdg~~l~s-gs~d~~i~iwd~~~~ 159 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWELD-ENETLIVSKFCKYEHD--DIVSTVSVLSSGTQAVS-GSKDICIKVWDLAQQ 159 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEEC-TTSSCEEEEEEEECCS--SCEEEEEECTTSSEEEE-EETTSCEEEEETTTT
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEecc-CCCceeEeeccccCCC--CCEEEEEECCCCCEEEE-EeCCCeEEEEECCCC
Confidence 8999999999877765 8999999997 55444332 3444 45899999999999998 999999999999986
Q ss_pred CCCCcccccccCCeEEEEEccCCC-EEEEEecCCcEEEEEECCCcceeeEEecc-----eeeeeecCCCCeEEEEeecCC
Q psy3710 175 ERPPLDIAAHEAPLSCIALNQTGT-RLATASYKGTLIRVFDTGSGQKLNELRRG-----LCVLCPNSNNSLLAFPGRKSG 248 (424)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~dg 248 (424)
+.+..+.+|.+.|.+++|+|++. +|++++.|+. |++||+++++....+... +..++++|++..++++|+.||
T Consensus 160 -~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 160 -VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNR-ILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp -EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSC-EEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred -cEEEEEcCcCCceEEEEecCCCCCceeeeccccc-cccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 77888999999999999999885 7899999999 999999999888776422 567899999988888899999
Q ss_pred eEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEECCCCceeeeeccCCcEEEEEeCCCcEEEE
Q psy3710 249 HVHLVDLADPERPPLDIAAHEAPLSCIALNQTG-TRLATASYKGTLIRVFDTGSGQKLNELRRDSSYLCVSSDHGTVHVF 327 (424)
Q Consensus 249 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 327 (424)
.|++||+++++ .+..+.+|...|++++|+|++ ++|++++.|++ |+|||+++++++
T Consensus 238 ~v~~wd~~~~~-~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~~~~~---------------------- 293 (344)
T 4gqb_B 238 TVSLVDTKSTS-CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSLSELF---------------------- 293 (344)
T ss_dssp EEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTCCEEE----------------------
T ss_pred cEEEEECCCCc-EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECCCCcEE----------------------
Confidence 99999999876 467788999999999999987 56888888888 787777654321
Q ss_pred EccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCe-EEEEeccCcEEEEEecC
Q psy3710 328 SVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNS-IIVICADGSYYKFMFNS 395 (424)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~dg~v~~~~~~~ 395 (424)
....|.+.|+.++|+|++++ |++++.||+|++|++..
T Consensus 294 -------------------------------~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 294 -------------------------------RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp -------------------------------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred -------------------------------EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 01224566889999999875 66899999999999973
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-41 Score=298.69 Aligned_cols=272 Identities=13% Similarity=0.182 Sum_probs=233.1
Q ss_pred ccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccE
Q psy3710 45 ERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLI 120 (424)
Q Consensus 45 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i 120 (424)
.....|.+.|.+++|+|++.++++++ .|++|++||..+++....+. +...|.+++|+|++..+++ |+.+
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~~l~s~s-------~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i 130 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKRRIVSSS-------QDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKC 130 (354)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEE-------TTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEE
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEe-------CCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCE
Confidence 33556899999999999999999998 68999999999999888887 6788999999999988887 8999
Q ss_pred EEEeecCC-----CceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEcc
Q psy3710 121 KVYTFIQC-----PQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ 195 (424)
Q Consensus 121 ~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 195 (424)
++|++... ......+..|... +.++.|+|++..|++ ++.|+.|++||++++ +.+..+.+|...|.+++|+|
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~t-~s~D~~v~lwd~~~~-~~~~~~~~h~~~v~~~~~~~ 206 (354)
T 2pbi_B 131 SVYPLTFDKNENMAAKKKSVAMHTNY--LSACSFTNSDMQILT-ASGDGTCALWDVESG-QLLQSFHGHGADVLCLDLAP 206 (354)
T ss_dssp EEEECCCCTTCCSGGGCEEEEECSSC--EEEEEECSSSSEEEE-EETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECC
T ss_pred EEEEEeccccccccccceeeeccCCc--EEEEEEeCCCCEEEE-EeCCCcEEEEeCCCC-eEEEEEcCCCCCeEEEEEEe
Confidence 99998522 1345566667644 888999999999998 999999999999986 67788999999999999988
Q ss_pred --CCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeE
Q psy3710 196 --TGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLS 273 (424)
Q Consensus 196 --~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 273 (424)
++++|++++.|+. |++||+++++++..+. +|...|+
T Consensus 207 ~~~g~~l~sgs~Dg~-v~~wd~~~~~~~~~~~-----------------------------------------~h~~~v~ 244 (354)
T 2pbi_B 207 SETGNTFVSGGCDKK-AMVWDMRSGQCVQAFE-----------------------------------------THESDVN 244 (354)
T ss_dssp CSSCCEEEEEETTSC-EEEEETTTCCEEEEEC-----------------------------------------CCSSCEE
T ss_pred CCCCCEEEEEeCCCe-EEEEECCCCcEEEEec-----------------------------------------CCCCCeE
Confidence 5789999999999 9999999887655443 6888899
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEECCCCceee--------------eeccCCcEEEEEeCCCcEEEEEccccccccccc
Q psy3710 274 CIALNQTGTRLATASYKGTLIRVFDTGSGQKLN--------------ELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQS 339 (424)
Q Consensus 274 ~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~--------------~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 339 (424)
+++|+|++++|++++.|++ |++||+++++.+. .|+|++++|++++.|+.|++||+.+++.+.
T Consensus 245 ~v~~~p~~~~l~s~s~D~~-v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~--- 320 (354)
T 2pbi_B 245 SVRYYPSGDAFASGSDDAT-CRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS--- 320 (354)
T ss_dssp EEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE---
T ss_pred EEEEeCCCCEEEEEeCCCe-EEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEE---
Confidence 9999999999999999999 9999998775543 356889999999999999999998866432
Q ss_pred cceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEE
Q psy3710 340 SLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFM 392 (424)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~ 392 (424)
.+..|.+.|..++|+||+++|++|+.||.|++|+
T Consensus 321 -------------------~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 321 -------------------ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -------------------EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -------------------EEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 2345678899999999999999999999999995
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-42 Score=305.53 Aligned_cols=308 Identities=15% Similarity=0.147 Sum_probs=225.1
Q ss_pred EEEECCCCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEE-
Q psy3710 15 YAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVV- 93 (424)
Q Consensus 15 ~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~- 93 (424)
.+.+.+++.++...+......|++.+... ..|...|.+++|+|||++|++++... .+..|+.+++|+..++...
T Consensus 10 g~d~g~~~~~~~~~g~~~~~~w~~p~~~p----~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~~v~~~~~~~~~~~~ 84 (357)
T 4g56_B 10 GVDLGTENLYFQSNGSSKGSAWGRPVTAP----ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGGSIWVFKDPEGAPNE 84 (357)
T ss_dssp ----------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCEEEEEESSCC---CG
T ss_pred CCCCCccceEEecCCCccccccCCCCCCc----ccccCCEEEEEECCCCCEEEEEcCCC-CccccCeEEEEECCCCCcce
Confidence 34556666666665555589998765433 35788999999999999999988542 2234789999998776543
Q ss_pred ----EEEeecCCeEEEEecCCceEEEe--eccEEEEeecCCCcee--EEEeeCCCCCeeEEEeecCCCCeEEEeeccCCe
Q psy3710 94 ----ICLEFNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQL--HVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGH 165 (424)
Q Consensus 94 ----~~~~~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~ 165 (424)
....|...|.+++|+|++.++++ |+.|++||+. +++.. ..+....+...+.+++|+|++++|++ |+.|+.
T Consensus 85 ~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~-~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s-gs~dg~ 162 (357)
T 4g56_B 85 SLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEIL-EKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVS-GGKDFS 162 (357)
T ss_dssp GGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC---------CCCCEEECCCSSCEEEEEECSSSSEEEE-EETTSC
T ss_pred eEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeecc-ccceeEEEeeccCCCCCCEEEEEECCCCCEEEE-EeCCCe
Confidence 23447889999999999987776 8999999996 43322 22233333455899999999999998 999999
Q ss_pred EEEEeCCCCCCCCcccccccCCeEEEEEccCCC-EEEEEecCCcEEEEEECCCcceeeEEec-----ceeeeeecCCCCe
Q psy3710 166 VHLVDLADPERPPLDIAAHEAPLSCIALNQTGT-RLATASYKGTLIRVFDTGSGQKLNELRR-----GLCVLCPNSNNSL 239 (424)
Q Consensus 166 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~ 239 (424)
|++||++++ +.+..+.+|...|.+++|+|++. ++++++.|+. |++||++++++...+.. .+..++++|++..
T Consensus 163 v~iwd~~~~-~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~-v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 240 (357)
T 4g56_B 163 VKVWDLSQK-AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR-ILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDD 240 (357)
T ss_dssp EEEEETTTT-EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSC-EEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTT
T ss_pred EEEEECCCC-cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCc-eEEEECCCCceeeeeeeccccccccchhhhhcccc
Confidence 999999986 67788899999999999999875 7899999999 99999999887765542 2678899999988
Q ss_pred EEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEECCCCceeee-----------
Q psy3710 240 LAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTG-TRLATASYKGTLIRVFDTGSGQKLNE----------- 307 (424)
Q Consensus 240 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~~i~iwd~~~~~~~~~----------- 307 (424)
++++|+.|+.|++||+++++ ....+.+|...|++++|+|++ ++|++++.|++ |+|||+++++++..
T Consensus 241 ~la~g~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~~~~~~~~~H~~~V~~va 318 (357)
T 4g56_B 241 TFACGDETGNVSLVNIKNPD-SAQTSAVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDADFSEVFRDLSHRDFVTGVA 318 (357)
T ss_dssp EEEEEESSSCEEEEESSCGG-GCEEECCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTSCEEEEECCCSSCEEEEE
T ss_pred eEEEeecccceeEEECCCCc-EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECCCCcEeEECCCCCCEEEEE
Confidence 88889999999999999876 456778999999999999987 57999999999 99999999887764
Q ss_pred ecc-CCcEEEEEeCCCcEEEEEccccc
Q psy3710 308 LRR-DSSYLCVSSDHGTVHVFSVDEAQ 333 (424)
Q Consensus 308 ~~~-~~~~l~~~~~d~~i~iw~~~~~~ 333 (424)
|+| ++++|++++.||+|++|++.+..
T Consensus 319 fsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 319 WSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp ECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 567 78999999999999999997643
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-41 Score=297.74 Aligned_cols=284 Identities=13% Similarity=0.135 Sum_probs=230.7
Q ss_pred ccccccCCceEEEEE-----CC-CCCeeEeecCCe-EEEEeCCcCc-------ccccccccCCCeeeEEEeccCceEEEE
Q psy3710 4 GTSSTYKNGLLYAGF-----NQ-DQGCFACGMEDG-FRIYNCDPLK-------EKERQDFTDGGLGHVEMLFRCNYLALV 69 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~-----s~-~g~~la~g~~~~-i~iw~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~ 69 (424)
..+.+|.+.|++++| ++ ++++|++|+.|+ |++||+...+ .......|...|.+++|+|++.+++++
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~ 94 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS 94 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEE
Confidence 358899999999999 77 899999999998 9999987543 223355688999999999999999988
Q ss_pred eCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEe-eCCCCCee
Q psy3710 70 GGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFE-TNPNPKGL 144 (424)
Q Consensus 70 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~-~~~~~~~~ 144 (424)
+ .|++|++||+++++.+..+. |...|.+++|+|++..+++ |+.|++||+. . ....... ...+...+
T Consensus 95 s-------~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-~-~~~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 95 S-------WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-G-ECKFSSAEKENHSDWV 165 (343)
T ss_dssp E-------TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-S-CEEEECCTTTSCSSCE
T ss_pred c-------CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-C-CceeeeecccCCCcee
Confidence 8 68999999999999999888 8999999999999977765 8999999985 2 2222222 11233458
Q ss_pred EEEeecCCC----------CeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEE
Q psy3710 145 CVLCPNSNN----------SLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 214 (424)
Q Consensus 145 ~~~~~~~~~----------~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd 214 (424)
.++.++|++ .++++ ++.||.|++||... .....+.+|...|.+++|+|+|++|++++.|+. |++||
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~-v~iwd 241 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFAS-VGWDGRLKVWNTNF--QIRYTFKAHESNVNHLSISPNGKYIATGGKDKK-LLIWD 241 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEE-EETTSEEEEEETTT--EEEEEEECCSSCEEEEEECTTSSEEEEEETTCE-EEEEE
T ss_pred eeeeeccccccccccCCCCCEEEE-EcCCCEEEEEcCCC--ceeEEEcCccccceEEEECCCCCEEEEEcCCCe-EEEEE
Confidence 888999887 67777 99999999999543 556678899999999999999999999999999 99999
Q ss_pred CC-CcceeeEEe--cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCC-eee-----------ccCCCCeEEEEEcC
Q psy3710 215 TG-SGQKLNELR--RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPP-LDI-----------AAHEAPLSCIALNQ 279 (424)
Q Consensus 215 ~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~-~~~-----------~~~~~~v~~~~~~~ 279 (424)
+. .......+. ..+..++++|++..++ ++.|+.|++||+.+.+... ..+ .+|...|.+++|+|
T Consensus 242 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~la--~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 319 (343)
T 2xzm_R 242 ILNLTYPQREFDAGSTINQIAFNPKLQWVA--VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA 319 (343)
T ss_dssp SSCCSSCSEEEECSSCEEEEEECSSSCEEE--EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS
T ss_pred CCCCcccceeecCCCcEEEEEECCCCCEEE--EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECC
Confidence 94 444444443 3478899999987554 4568889999998765322 122 26888999999999
Q ss_pred CCCEEEEEeCCCcEEEEEECCCCc
Q psy3710 280 TGTRLATASYKGTLIRVFDTGSGQ 303 (424)
Q Consensus 280 ~~~~l~~~~~d~~~i~iwd~~~~~ 303 (424)
+|++|++|+.||. |++|++++++
T Consensus 320 ~g~~l~sg~~Dg~-v~~w~~~~g~ 342 (343)
T 2xzm_R 320 LGKKLFAGFTDGV-IRTFSFETSA 342 (343)
T ss_dssp SSCCEEEEETTSE-EEEEEEEEEE
T ss_pred CCCeEEEecCCce-EEEEEEEccC
Confidence 9999999999999 9999987653
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=298.43 Aligned_cols=305 Identities=14% Similarity=0.192 Sum_probs=255.7
Q ss_pred ccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEE
Q psy3710 8 TYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWD 86 (424)
Q Consensus 8 ~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd 86 (424)
-|.++|.+++|+|||++++++..++ +.+|.............|.+.|.+++|+|+++++++++ |+.|++||
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~--------dg~i~iw~ 78 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG--------KGCVKVWD 78 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC--------BSEEEEEE
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC--------CCeEEEEE
Confidence 3667899999999999999877666 76676554444333445889999999999999998877 69999999
Q ss_pred CCCCcEE---EEE---eecCCeEEEEecCCceEEEe---eccEEEEeecCCCc--eeEEEeeCCCCCeeEEEeecCCCCe
Q psy3710 87 DLKKQVV---ICL---EFNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQ--QLHVFETNPNPKGLCVLCPNSNNSL 155 (424)
Q Consensus 87 ~~~~~~~---~~~---~~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (424)
+.+++.. ..+ .+...|.+++|+|++..+++ ++.|++||+. ..+ ....+..+. ..+.+++++|++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~--~~i~~~~~~~~~~~ 155 (337)
T 1gxr_A 79 ISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA-APTPRIKAELTSSA--PACYALAISPDSKV 155 (337)
T ss_dssp TTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC-CC--EEEEEEECSS--SCEEEEEECTTSSE
T ss_pred CCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECC-CCCcceeeecccCC--CceEEEEECCCCCE
Confidence 9876532 222 36789999999999976665 8999999996 444 344455554 45889999999999
Q ss_pred EEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEec--ceeeeee
Q psy3710 156 LAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR--GLCVLCP 233 (424)
Q Consensus 156 l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~--~~~~~~~ 233 (424)
+++ ++.||.|++||++++ +....+..|...|.+++|+|++++|++++.|+. |++||+++++.+..+.. .+..+++
T Consensus 156 l~~-~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~v~~~~~ 232 (337)
T 1gxr_A 156 CFS-CCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT-VRSWDLREGRQLQQHDFTSQIFSLGY 232 (337)
T ss_dssp EEE-EETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred EEE-EeCCCcEEEEeCCCC-ceeeeeecccCceEEEEECCCCCEEEEEecCCc-EEEEECCCCceEeeecCCCceEEEEE
Confidence 998 999999999999986 667788889999999999999999999999999 99999999988877653 4778899
Q ss_pred cCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeee------
Q psy3710 234 NSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE------ 307 (424)
Q Consensus 234 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~------ 307 (424)
+|++..+++ ++.++.|++||+++.+ ...+..|...|.+++|+|++++|++++.|+. |++||+.+++.+..
T Consensus 233 s~~~~~l~~-~~~~~~i~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~~~~~~~~~~~~~~~~~~ 308 (337)
T 1gxr_A 233 CPTGEWLAV-GMESSNVEVLHVNKPD--KYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSKESSS 308 (337)
T ss_dssp CTTSSEEEE-EETTSCEEEEETTSSC--EEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEECSSC
T ss_pred CCCCCEEEE-EcCCCcEEEEECCCCC--eEEEcCCccceeEEEECCCCCEEEEecCCCc-EEEEECCCCeEEEEecCCCc
Confidence 999887776 8899999999999865 3456689999999999999999999999999 99999999877643
Q ss_pred -----eccCCcEEEEEeCCCcEEEEEcc
Q psy3710 308 -----LRRDSSYLCVSSDHGTVHVFSVD 330 (424)
Q Consensus 308 -----~~~~~~~l~~~~~d~~i~iw~~~ 330 (424)
|+|++++|++++.||.|++|++.
T Consensus 309 v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 309 VLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred EEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 56899999999999999999973
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=314.94 Aligned_cols=339 Identities=12% Similarity=0.165 Sum_probs=261.6
Q ss_pred CCeeeEEEeccCc-eEEEEeCCcC---CCcCCCeEEEEECCCCc---EEEEEeecCCeEEEEecCCceEEEe---eccEE
Q psy3710 52 GGLGHVEMLFRCN-YLALVGGGTH---PKYPNNRVMIWDDLKKQ---VVICLEFNAPVKGVRLRRDKIVVVL---EGLIK 121 (424)
Q Consensus 52 ~~i~~~~~~~~~~-~l~~~~~~~~---~~~~d~~i~iwd~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~---~~~i~ 121 (424)
..+.+++|+|++. ++++.+.... ....|+.|++||+.+++ .+..+.|...|.+++|+|++.++++ |+.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 4577899999987 5555511000 00158999999998875 5555668899999999999977765 89999
Q ss_pred EEeecC---CCceeEEEeeCCCCCeeEEEeecCC-CCeEEEeeccCCeEEEEeCCCCC------CC--CcccccccCCeE
Q psy3710 122 VYTFIQ---CPQQLHVFETNPNPKGLCVLCPNSN-NSLLAFPGRKSGHVHLVDLADPE------RP--PLDIAAHEAPLS 189 (424)
Q Consensus 122 v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~dg~i~i~d~~~~~------~~--~~~~~~~~~~v~ 189 (424)
+|++.. ..+.+..+..|.. .+.+++|+|+ +.++++ ++.||.|++||+.+.. .. ......|...|.
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSS--SVKTVKFNAKQDNVLAS-GGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSS--CCCEEEECSSSTTBEEE-ECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred EeecccccccccchhhccCCcc--ceEEEEEcCCCCCEEEE-EcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 999973 1346666776664 4788999998 788887 9999999999999863 11 123467999999
Q ss_pred EEEEccC-CCEEEEEecCCcEEEEEECCCcceeeEEec---------ceeeeeecCCCCeEEEEeecCC---eEEEEeCC
Q psy3710 190 CIALNQT-GTRLATASYKGTLIRVFDTGSGQKLNELRR---------GLCVLCPNSNNSLLAFPGRKSG---HVHLVDLA 256 (424)
Q Consensus 190 ~~~~~~~-~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~dg---~i~i~d~~ 256 (424)
+++|+|+ +.+|++++.|+. |++||+++++.+..+.. .+..++++|++..++++++.++ .|++||++
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~ 248 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNF-ASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248 (416)
T ss_dssp EEEECSSCTTEEEEESSSSC-EEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT
T ss_pred EEEeCCCCCcEEEEEcCCCC-EEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCC
Confidence 9999999 789999999999 99999999988887754 3778999999988888899998 99999999
Q ss_pred CCCCCCeeec-cCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEECCCCceeee------------eccCC-cEEEEEeCC
Q psy3710 257 DPERPPLDIA-AHEAPLSCIALNQ-TGTRLATASYKGTLIRVFDTGSGQKLNE------------LRRDS-SYLCVSSDH 321 (424)
Q Consensus 257 ~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~~i~iwd~~~~~~~~~------------~~~~~-~~l~~~~~d 321 (424)
+...+...+. +|...|.+++|+| ++++|++++.|+. |++||+++++.+.+ |+|++ .+|++++.|
T Consensus 249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d 327 (416)
T 2pm9_A 249 NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFD 327 (416)
T ss_dssp STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSS
T ss_pred CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecC
Confidence 9876777777 8999999999999 9999999999999 99999999988775 45787 899999999
Q ss_pred CcEEEEEccccccccccccc------eeeeccCcc-------ccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcE
Q psy3710 322 GTVHVFSVDEAQKINKQSSL------ASASFLPKY-------FSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSY 388 (424)
Q Consensus 322 ~~i~iw~~~~~~~~~~~~~~------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v 388 (424)
+.|++|++.++......... ....+.+.. ....+.+.....+..++..++|+|||++|++++.||.|
T Consensus 328 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v 407 (416)
T 2pm9_A 328 NKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGV 407 (416)
T ss_dssp SEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCB
T ss_pred CcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeE
Confidence 99999999987654332110 000011000 00001111112245677899999999999999999999
Q ss_pred EEEEecC
Q psy3710 389 YKFMFNS 395 (424)
Q Consensus 389 ~~~~~~~ 395 (424)
++|++..
T Consensus 408 ~~w~~~~ 414 (416)
T 2pm9_A 408 SITNPKI 414 (416)
T ss_dssp CCBCCCC
T ss_pred EEEEecc
Confidence 9999863
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-41 Score=290.29 Aligned_cols=273 Identities=11% Similarity=0.144 Sum_probs=229.2
Q ss_pred EEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEE
Q psy3710 92 VVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVH 167 (424)
Q Consensus 92 ~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~ 167 (424)
..+++. |.+.|.+++|+|++.++++ |+.|++||+. ++..+..+..+..+ +.++.|+|++++|++ |+.|+.|+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~-~~~~~~~~~~~~~~--v~~~~~~~~~~~l~s-~s~d~~i~ 80 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYE-TQVEVRSIQVTETP--VRAGKFIARKNWIIV-GSDDFRIR 80 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSC--EEEEEEEGGGTEEEE-EETTSEEE
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECC-CCceeEEeeccCCc--EEEEEEeCCCCEEEE-ECCCCEEE
Confidence 345566 8999999999999987776 8999999996 77788888877754 788899999999998 99999999
Q ss_pred EEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcce-eeEEecc---eeeeeecCCCCeEEEE
Q psy3710 168 LVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK-LNELRRG---LCVLCPNSNNSLLAFP 243 (424)
Q Consensus 168 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~ 243 (424)
+||+.++ +.+..+.+|.+.|.+++|+|++++|++++.|+. |++||++++.. ...+..+ +..++++|.+..++++
T Consensus 81 vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~-v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s 158 (304)
T 2ynn_A 81 VFNYNTG-EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT-VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (304)
T ss_dssp EEETTTC-CEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEE
T ss_pred EEECCCC-cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCe-EEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEE
Confidence 9999987 677889999999999999999999999999999 99999988744 4455544 6788999987777788
Q ss_pred eecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEECCCCceeee------------ec
Q psy3710 244 GRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ--TGTRLATASYKGTLIRVFDTGSGQKLNE------------LR 309 (424)
Q Consensus 244 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~~i~iwd~~~~~~~~~------------~~ 309 (424)
|+.|+.|++||++..........+|...+..++|+| ++.+|++++.|+. |++||+++++++.+ |+
T Consensus 159 gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~iWd~~~~~~~~~~~~h~~~v~~~~~~ 237 (304)
T 2ynn_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLEGHMSNVSFAVFH 237 (304)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE-EEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe-EEEEeCCCCccceeeCCCCCCEEEEEEC
Confidence 999999999999887755555557778999999987 7789999999999 99999999987765 46
Q ss_pred cCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCC--eEEEEeccCc
Q psy3710 310 RDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSN--SIIVICADGS 387 (424)
Q Consensus 310 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~~~~~dg~ 387 (424)
|++++|++++.||+|++||+.+++.+.. +..+...+..++|+|+++ ++++|+.| .
T Consensus 238 p~~~~l~s~s~Dg~i~iWd~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~asg~~~-g 294 (304)
T 2ynn_A 238 PTLPIIISGSEDGTLKIWNSSTYKVEKT----------------------LNVGLERSWCIATHPTGRKNYIASGFDN-G 294 (304)
T ss_dssp SSSSEEEEEETTSCEEEEETTTCCEEEE----------------------ECCSSSSEEEEEECTTCGGGCEEEEETT-E
T ss_pred CCCCEEEEEcCCCeEEEEECCCCceeee----------------------ccCCCccEEEEEECCCCCceEEEEecCC-c
Confidence 8899999999999999999998775443 233456678899999875 46766655 5
Q ss_pred EEEEEec
Q psy3710 388 YYKFMFN 394 (424)
Q Consensus 388 v~~~~~~ 394 (424)
+.+|++.
T Consensus 295 ~~~~~~~ 301 (304)
T 2ynn_A 295 FTVLSLG 301 (304)
T ss_dssp EEEEECC
T ss_pred eEEEEec
Confidence 6777764
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-41 Score=299.36 Aligned_cols=291 Identities=16% Similarity=0.157 Sum_probs=253.9
Q ss_pred ccccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeE
Q psy3710 4 GTSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 82 (424)
..+.+|.+.|++++|+|+|++|++|+.++ |++||+.+++.......|.+.|.+++|+|+++++++++ .|+.|
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-------~dg~i 98 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGS-------ADYSI 98 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTTEE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEe-------CCCeE
Confidence 45889999999999999999999999888 99999999988877778899999999999999999888 68999
Q ss_pred EEEECCCCcEEEEEeecCCeEEEEecCCceEEEe---e-----ccEEEEeecCCC----------ceeEEEeeCCCCCee
Q psy3710 83 MIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL---E-----GLIKVYTFIQCP----------QQLHVFETNPNPKGL 144 (424)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~-----~~i~v~~~~~~~----------~~~~~~~~~~~~~~~ 144 (424)
++||+.+++.+..+.+...+.+++|+|++..+++ + +.|++||+.... .....+..+.....+
T Consensus 99 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 99 KLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp EEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred EEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 9999999999999999999999999999977775 5 899999996332 133444555544468
Q ss_pred EEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEE
Q psy3710 145 CVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNEL 224 (424)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~ 224 (424)
.+++++|+++++++ ++.||.|++||+.+.......+..|...|.+++|+|++++|++++.|+. |++||+++++.+..+
T Consensus 179 ~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~ 256 (369)
T 3zwl_B 179 TVAGWSTKGKYIIA-GHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN-SFLVDVSTLQVLKKY 256 (369)
T ss_dssp EEEEECGGGCEEEE-EETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEE
T ss_pred eEEEEcCCCCEEEE-EcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCce-EEEEECCCCceeeee
Confidence 89999999999998 9999999999999854677788899999999999999999999999999 999999999988887
Q ss_pred ecc--eeeeeecCCCCeEEEEeecCC--------------eEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEe
Q psy3710 225 RRG--LCVLCPNSNNSLLAFPGRKSG--------------HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS 288 (424)
Q Consensus 225 ~~~--~~~~~~~~~~~~~~~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 288 (424)
... +..++++|++..+++ ++.++ .+++||+.+++ ....+.+|...|++++|+|++++|++++
T Consensus 257 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 334 (369)
T 3zwl_B 257 ETDCPLNTAVITPLKEFIIL-GGGQEAKDVTTTSANEGKFEARFYHKIFEE-EIGRVQGHFGPLNTVAISPQGTSYASGG 334 (369)
T ss_dssp ECSSCEEEEEECSSSSEEEE-EECCC-------------CEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred cCCCCceeEEecCCCceEEE-eecCCCceEEEEecCCCcceeEEEecCCCc-chhheecccCcEEEEEECCCCCEEEEEc
Confidence 643 778899999998888 55555 89999998876 4566778999999999999999999999
Q ss_pred CCCcEEEEEECCCCceee
Q psy3710 289 YKGTLIRVFDTGSGQKLN 306 (424)
Q Consensus 289 ~d~~~i~iwd~~~~~~~~ 306 (424)
.||. |++|+++++....
T Consensus 335 ~dg~-v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 335 EDGF-IRLHHFEKSYFDF 351 (369)
T ss_dssp TTSE-EEEEEECHHHHTC
T ss_pred CCCe-EEEEECccccchh
Confidence 9999 9999998765443
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=288.02 Aligned_cols=273 Identities=16% Similarity=0.257 Sum_probs=235.3
Q ss_pred EEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEE
Q psy3710 92 VVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVH 167 (424)
Q Consensus 92 ~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~ 167 (424)
....+. |...|.+++|+|++.++++ |+.|++|++. .++....+..|. ..+.+++|+|++++|++ |+.|+.|+
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~-~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s-~~~d~~i~ 90 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHK--LGISDVAWSSDSNLLVS-ASDDKTLK 90 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEECCCS--SCEEEEEECTTSSEEEE-EETTSEEE
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCC-CcccchhhccCC--CceEEEEEcCCCCEEEE-ECCCCEEE
Confidence 344455 7899999999999987776 8999999996 677777777776 44889999999999998 99999999
Q ss_pred EEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEe
Q psy3710 168 LVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPG 244 (424)
Q Consensus 168 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 244 (424)
+||++++ +.+..+.+|...|.+++|+|++++|++++.|+. |++||+++++.+..+..+ +..++++|++..++ ++
T Consensus 91 vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~ 167 (312)
T 4ery_A 91 IWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV-SS 167 (312)
T ss_dssp EEETTTC-CEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE-EE
T ss_pred EEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEE-EE
Confidence 9999986 677788999999999999999999999999999 999999999988888754 67788999887665 59
Q ss_pred ecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec---------------
Q psy3710 245 RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR--------------- 309 (424)
Q Consensus 245 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~--------------- 309 (424)
+.||.|++||+++++........+..++..++|+|++++|++++.|+. |++||+++++.+..+.
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTE-EEEEETTTTEEEEEECSSCCSSSCCCEEEEC
T ss_pred eCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEECCCCcEEEEEEecCCceEEEEEEEEe
Confidence 999999999999876544444567788999999999999999999999 9999999998877653
Q ss_pred cCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEe--ccCc
Q psy3710 310 RDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVIC--ADGS 387 (424)
Q Consensus 310 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~dg~ 387 (424)
+++.+|++++.||.|++||+.+++.+.. +..|...+..++|+|++++|++++ .||.
T Consensus 247 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~----------------------~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~ 304 (312)
T 4ery_A 247 TGGKWIVSGSEDNLVYIWNLQTKEIVQK----------------------LQGHTDVVISTACHPTENIIASAALENDKT 304 (312)
T ss_dssp SSSCEEEECCTTSCEEEEETTTCCEEEE----------------------ECCCSSCEEEEEECSSSSEEEEEECTTTCC
T ss_pred CCCcEEEEECCCCEEEEEECCCchhhhh----------------------hhccCCcEEEEeecCcCCceEEEEccCCcc
Confidence 4678999999999999999998765432 445677889999999999999987 6999
Q ss_pred EEEEEec
Q psy3710 388 YYKFMFN 394 (424)
Q Consensus 388 v~~~~~~ 394 (424)
|++|+.+
T Consensus 305 i~~W~~d 311 (312)
T 4ery_A 305 IKLWKSD 311 (312)
T ss_dssp EEEEECC
T ss_pred EEEecCC
Confidence 9999974
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=307.98 Aligned_cols=314 Identities=12% Similarity=0.126 Sum_probs=254.3
Q ss_pred CeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe---eccEEEEeecCCC
Q psy3710 53 GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCP 129 (424)
Q Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~ 129 (424)
.+..++|+|+++++++++ .|+.+++||..+++....+.....+....+++++..+++ |+.|++||+. ..
T Consensus 58 ~~~~~~~s~~g~~l~~~~-------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~ 129 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKAR-------LDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSN-FN 129 (420)
T ss_dssp CCTTCEEEEEETTEEEEE-------ETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTT-SC
T ss_pred cccceeeeecCCeEEEEE-------cCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCC-Cc
Confidence 345789999999999998 589999999987766555554444555678899877765 8999999996 66
Q ss_pred ceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcE
Q psy3710 130 QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTL 209 (424)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~ 209 (424)
+....+..|. ..+.+++|+|++++|++ |+.|+.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|+.
T Consensus 130 ~~~~~~~~h~--~~v~~~~~~~~~~~l~s-~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~- 204 (420)
T 3vl1_A 130 LQREIDQAHV--SEITKLKFFPSGEALIS-SSQDMQLKIWSVKDG-SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGT- 204 (420)
T ss_dssp EEEEETTSSS--SCEEEEEECTTSSEEEE-EETTSEEEEEETTTC-CCCEEEECCSSCEEEEEEETTTTEEEEEETTSC-
T ss_pred ceeeeccccc--CccEEEEECCCCCEEEE-EeCCCeEEEEeCCCC-cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCc-
Confidence 6666666666 44899999999999998 999999999999986 677888999999999999999999999999999
Q ss_pred EEEEECCCcceeeEEecc---------------------------eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCC
Q psy3710 210 IRVFDTGSGQKLNELRRG---------------------------LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPP 262 (424)
Q Consensus 210 i~iwd~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~ 262 (424)
|++||+++++.+..+..+ +..++++|++..++ +|+.||.|++||+++++...
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~i~d~~~~~~~~ 283 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI-AGHVSGVITVHNVFSKEQTI 283 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEE-EEETTSCEEEEETTTCCEEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEE-EEcCCCeEEEEECCCCceeE
Confidence 999999999988887632 23355667766654 59999999999999887655
Q ss_pred eeeccCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEECCCCce-eeee------------ccCCcEEEEEeCCCcEEEEE
Q psy3710 263 LDIAAHEAPLSCIALNQTGT-RLATASYKGTLIRVFDTGSGQK-LNEL------------RRDSSYLCVSSDHGTVHVFS 328 (424)
Q Consensus 263 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~~i~iwd~~~~~~-~~~~------------~~~~~~l~~~~~d~~i~iw~ 328 (424)
.....|...|.+++|+|+++ +|++++.||. |++||+++++. +..+ .+++++|++++.|+.|++|+
T Consensus 284 ~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 284 QLPSKFTCSCNSLTVDGNNANYIYAGYENGM-LAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp EECCTTSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEE
T ss_pred EcccccCCCceeEEEeCCCCCEEEEEeCCCe-EEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEe
Confidence 55567899999999999998 9999999999 99999998754 4433 35788999999999999999
Q ss_pred ccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCC---eEEEEeccCcEEEEEec
Q psy3710 329 VDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSN---SIIVICADGSYYKFMFN 394 (424)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~l~~~~~dg~v~~~~~~ 394 (424)
+...+.......... ......+.+.+..++|+|+++ .|++++.+|.+.+|++.
T Consensus 363 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 363 ISDPESERPAIEFET-------------PTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp ECCTTCCSCEECTTS-------------CEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred ccCCCCCccceeccC-------------ccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 988543222111000 112345677899999999999 78888889999999986
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=294.02 Aligned_cols=284 Identities=14% Similarity=0.142 Sum_probs=229.9
Q ss_pred cccccCCceEEEEECCC-CCeeEeecCCe-EEEEeCCcCcc-----cccccccCCCeeeEEEeccCceEEEEeCCcCCCc
Q psy3710 5 TSSTYKNGLLYAGFNQD-QGCFACGMEDG-FRIYNCDPLKE-----KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKY 77 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~-g~~la~g~~~~-i~iw~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~ 77 (424)
+|+||.+.|++++|+|+ +++||+|+.|+ |+|||+.+.+. ......|...|.++.|+|+++++++++
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~------- 105 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS------- 105 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE-------
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc-------
Confidence 58899999999999998 58999999988 99999876553 223456889999999999999999988
Q ss_pred CCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCC-
Q psy3710 78 PNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSN- 152 (424)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 152 (424)
.|+.|++|+...+....... +...+....+++++..+++ |+.+++||.............+.. .+..++++++
T Consensus 106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~ 183 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE--WVSCVRFSPNS 183 (340)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSS--CEEEEEECSCS
T ss_pred ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccC--cccceEEccCC
Confidence 68999999999888887777 6788889999998876665 899999998633333333344443 4555666554
Q ss_pred -CCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc--ee
Q psy3710 153 -NSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG--LC 229 (424)
Q Consensus 153 -~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~--~~ 229 (424)
..++++ ++.|+.|++||+++. +....+.+|.++|.+++|+|++++|++++.|+. |++||+++.+.+..+..+ +.
T Consensus 184 ~~~~~~s-~~~d~~i~i~d~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~v~ 260 (340)
T 4aow_A 184 SNPIIVS-CGWDKLVKVWNLANC-KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ-AMLWDLNEGKHLYTLDGGDIIN 260 (340)
T ss_dssp SSCEEEE-EETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEECSSCEE
T ss_pred CCcEEEE-EcCCCEEEEEECCCC-ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCe-EEEEEeccCceeeeecCCceEE
Confidence 445565 999999999999986 677788899999999999999999999999999 999999999998888765 66
Q ss_pred eeeecCCCCeEEEEeecCCeEEEEeCCCCCC--------CCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCC
Q psy3710 230 VLCPNSNNSLLAFPGRKSGHVHLVDLADPER--------PPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 230 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~ 301 (424)
.++++|++..+ +++.|+.|++||+++... ......+|...|++++|+|+|++|++|+.||. |+|||+++
T Consensus 261 ~~~~~~~~~~~--~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~-v~iW~~~t 337 (340)
T 4aow_A 261 ALCFSPNRYWL--CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL-VRVWQVTI 337 (340)
T ss_dssp EEEECSSSSEE--EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSC-EEEEEEEC
T ss_pred eeecCCCCcee--eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEeCCC
Confidence 77888876433 367899999999986531 12234578999999999999999999999999 99999998
Q ss_pred Cc
Q psy3710 302 GQ 303 (424)
Q Consensus 302 ~~ 303 (424)
|+
T Consensus 338 Gt 339 (340)
T 4aow_A 338 GT 339 (340)
T ss_dssp --
T ss_pred cC
Confidence 85
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-41 Score=300.34 Aligned_cols=278 Identities=14% Similarity=0.184 Sum_probs=227.5
Q ss_pred cccCCceEEEEECCCCCeeEeecCCeEEEEeCCcCccccccccc------------------CCCeeeEEEeccCceEEE
Q psy3710 7 STYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFT------------------DGGLGHVEMLFRCNYLAL 68 (424)
Q Consensus 7 ~~h~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~------------------~~~i~~~~~~~~~~~l~~ 68 (424)
.+|.+.|++++|+|||++||+|+++.+++|++.+++.......+ ...|.+++|+|+++++++
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 36999999999999999999998767999999887764433222 124889999999999999
Q ss_pred EeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCee
Q psy3710 69 VGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGL 144 (424)
Q Consensus 69 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 144 (424)
++ .|++|++||+.+++.+..+. |...|.+++|+|++..+++ |+.|++||++ +++....+..+ ..+
T Consensus 141 ~~-------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~-~~~~~~~~~~~---~~v 209 (393)
T 1erj_A 141 GA-------EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR-TGQCSLTLSIE---DGV 209 (393)
T ss_dssp EE-------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEEECS---SCE
T ss_pred Ec-------CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC-CCeeEEEEEcC---CCc
Confidence 88 68999999999999988888 8999999999999977765 8999999997 66666666543 347
Q ss_pred EEEeecC-CCCeEEEeeccCCeEEEEeCCCCCCCCccc-------ccccCCeEEEEEccCCCEEEEEecCCcEEEEEECC
Q psy3710 145 CVLCPNS-NNSLLAFPGRKSGHVHLVDLADPERPPLDI-------AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 216 (424)
Q Consensus 145 ~~~~~~~-~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 216 (424)
.+++++| +++++++ |+.||.|++||++++ ..+..+ .+|...|.+++|+|++++|++++.|+. |++||++
T Consensus 210 ~~~~~~~~~~~~l~~-~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~-v~~wd~~ 286 (393)
T 1erj_A 210 TTVAVSPGDGKYIAA-GSLDRAVRVWDSETG-FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQ 286 (393)
T ss_dssp EEEEECSTTCCEEEE-EETTSCEEEEETTTC-CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC-
T ss_pred EEEEEECCCCCEEEE-EcCCCcEEEEECCCC-cEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEECC
Confidence 7889998 8888887 999999999999876 333333 579999999999999999999999999 9999997
Q ss_pred Ccc------------eeeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcC--
Q psy3710 217 SGQ------------KLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ-- 279 (424)
Q Consensus 217 ~~~------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-- 279 (424)
+.. +...+.++ +..+++++++..++ +|+.|+.|++||+.+++ +...+.+|...|.+++|++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-sgs~D~~v~iwd~~~~~-~~~~l~~h~~~v~~v~~~~~~ 364 (393)
T 1erj_A 287 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL-SGSKDRGVLFWDKKSGN-PLLMLQGHRNSVISVAVANGS 364 (393)
T ss_dssp --------------CEEEEEECCSSCEEEEEECGGGCEEE-EEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECSSC
T ss_pred CCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEE-EEeCCCeEEEEECCCCe-EEEEECCCCCCEEEEEecCCc
Confidence 643 33344433 56788888887665 59999999999999876 4567789999999999986
Q ss_pred ----CCCEEEEEeCCCcEEEEEECCC
Q psy3710 280 ----TGTRLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 280 ----~~~~l~~~~~d~~~i~iwd~~~ 301 (424)
++++|++|+.|+. |++|+++.
T Consensus 365 ~~~p~~~~l~sgs~Dg~-i~iW~~~~ 389 (393)
T 1erj_A 365 SLGPEYNVFATGSGDCK-ARIWKYKK 389 (393)
T ss_dssp TTCTTCEEEEEEETTSE-EEEEEEEE
T ss_pred CcCCCCCEEEEECCCCc-EEECcccc
Confidence 5778888888888 88888754
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-40 Score=288.16 Aligned_cols=278 Identities=11% Similarity=0.176 Sum_probs=224.8
Q ss_pred cccccCCCeeeEEEeccC-ceEEEEeCCcCCCcCCCeEEEEECCC-----CcEEEEEe-ecCCeEEEEecCCceEEEe--
Q psy3710 46 RQDFTDGGLGHVEMLFRC-NYLALVGGGTHPKYPNNRVMIWDDLK-----KQVVICLE-FNAPVKGVRLRRDKIVVVL-- 116 (424)
Q Consensus 46 ~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~~~~~d~~i~iwd~~~-----~~~~~~~~-~~~~v~~~~~~~~~~~~~~-- 116 (424)
....|.+.|.+++|+|++ +.+++++ .|++|++|++.. +..+..+. |...|.+++|+|++.++++
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s-------~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSAS-------RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEE-------TTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEccccceEEEEEccCCCccEEEEec-------CCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence 456789999999999976 7788877 689999999853 33456666 8999999999999988776
Q ss_pred -eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEcc
Q psy3710 117 -EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ 195 (424)
Q Consensus 117 -~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 195 (424)
|+.|++||+. +++.+..+..|... +.+++++|++.++++ |+.|+.|++||++. ..+..+.+|...|.+++|+|
T Consensus 85 ~D~~v~~wd~~-~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s-~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~ 158 (319)
T 3frx_A 85 WDKTLRLWDVA-TGETYQRFVGHKSD--VMSVDIDKKASMIIS-GSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVP 158 (319)
T ss_dssp TTSEEEEEETT-TTEEEEEEECCSSC--EEEEEECTTSCEEEE-EETTSCEEEEETTS--CEEEEECCCSSCEEEEEECC
T ss_pred CCCEEEEEECC-CCCeeEEEccCCCc--EEEEEEcCCCCEEEE-EeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEcc
Confidence 8999999997 78888888888754 889999999999998 99999999999975 56778889999999999998
Q ss_pred C------CCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCC
Q psy3710 196 T------GTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHE 269 (424)
Q Consensus 196 ~------~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 269 (424)
. +..+++++.|+. |++||+++.+....+ .+|.
T Consensus 159 ~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~-----------------------------------------~~h~ 196 (319)
T 3frx_A 159 NEKADDDSVTIISAGNDKM-VKAWNLNQFQIEADF-----------------------------------------IGHN 196 (319)
T ss_dssp C------CCEEEEEETTSC-EEEEETTTTEEEEEE-----------------------------------------CCCC
T ss_pred CCCCCCCccEEEEEeCCCE-EEEEECCcchhheee-----------------------------------------cCCC
Confidence 5 448999999999 999999876554333 2688
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeee-----------eccCCcEEEEEeCCCcEEEEEcccccccccc
Q psy3710 270 APLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE-----------LRRDSSYLCVSSDHGTVHVFSVDEAQKINKQ 338 (424)
Q Consensus 270 ~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~-----------~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 338 (424)
..|.+++|+|++++|++++.|+. |++||+.+++.+.+ |+|++.++++++.+ .+++|++..+..+...
T Consensus 197 ~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~ 274 (319)
T 3frx_A 197 SNINTLTASPDGTLIASAGKDGE-IMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDL 274 (319)
T ss_dssp SCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeecc
Confidence 88999999999999999999999 99999988877654 46788888887754 5899998875544322
Q ss_pred ccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 339 SSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
..... . ....+...+..++|+|||++|++|+.||.|++|++.
T Consensus 275 ~~~~~----~----------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 275 RPEFA----G----------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp CCCCT----T----------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred Ccccc----c----------cccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 11000 0 011234567889999999999999999999999986
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-41 Score=293.14 Aligned_cols=282 Identities=16% Similarity=0.158 Sum_probs=220.0
Q ss_pred ccccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcc--cccc-cc-cCCCeeeEEEeccCceEEEEeCCcCCCcC
Q psy3710 4 GTSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKE--KERQ-DF-TDGGLGHVEMLFRCNYLALVGGGTHPKYP 78 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~--~~~~-~~-~~~~i~~~~~~~~~~~l~~~~~~~~~~~~ 78 (424)
..+.+|.++|.+++|+|+ +||+|+.++ |++|++..... .... .. |.+.|.+++|+|+++++++++ .
T Consensus 8 ~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s-------~ 78 (330)
T 2hes_X 8 KSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS-------F 78 (330)
T ss_dssp EEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE-------T
T ss_pred eeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe-------C
Confidence 457899999999999998 899999888 99999987532 2222 23 888999999999999999988 6
Q ss_pred CCeEEEEECCC-------CcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCC---ceeEEEeeCCCCCee
Q psy3710 79 NNRVMIWDDLK-------KQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCP---QQLHVFETNPNPKGL 144 (424)
Q Consensus 79 d~~i~iwd~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~---~~~~~~~~~~~~~~~ 144 (424)
|++|++||... .+.+..+. |...|.+++|+|++.++++ |+.|++||+.... +.+..+..|.. .+
T Consensus 79 D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~--~v 156 (330)
T 2hes_X 79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ--DV 156 (330)
T ss_dssp TSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS--CE
T ss_pred CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC--ce
Confidence 89999999853 34555665 8899999999999988876 8999999995232 34556666664 48
Q ss_pred EEEeecCCCCeEEEeeccCCeEEEEeCCCCC-CCCcccccccCCeEEEEEccC--CCEEEEEecCCcEEEEEECCCc---
Q psy3710 145 CVLCPNSNNSLLAFPGRKSGHVHLVDLADPE-RPPLDIAAHEAPLSCIALNQT--GTRLATASYKGTLIRVFDTGSG--- 218 (424)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~~i~iwd~~~~--- 218 (424)
.+++|+|++.+|++ |+.|+.|++||...+. ..+..+.+|.+.|.+++|+|+ +..|++++.|+. |++||++.+
T Consensus 157 ~~v~~~p~~~~l~s-~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~~~~ 234 (330)
T 2hes_X 157 KHVIWHPSEALLAS-SSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGDDED 234 (330)
T ss_dssp EEEEECSSSSEEEE-EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEECTT
T ss_pred EEEEECCCCCEEEE-EcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCCCcc
Confidence 89999999999998 9999999999987532 355678899999999999998 678999999999 999998764
Q ss_pred -----ceeeEEec----ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCC--CCeeeccCCC-CeEEEEEcC--CCCEE
Q psy3710 219 -----QKLNELRR----GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER--PPLDIAAHEA-PLSCIALNQ--TGTRL 284 (424)
Q Consensus 219 -----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~-~v~~~~~~~--~~~~l 284 (424)
.....+.. .+..+++++++ ++++++.||.|++||..+++. ......+|.. .|.+++|+| ++++|
T Consensus 235 ~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~l 312 (330)
T 2hes_X 235 DQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTIL 312 (330)
T ss_dssp SCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCE
T ss_pred ccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEE
Confidence 23333332 36778888554 566799999999999876531 1123357877 899999999 78999
Q ss_pred EEEeCCCcEEEEEECCC
Q psy3710 285 ATASYKGTLIRVFDTGS 301 (424)
Q Consensus 285 ~~~~~d~~~i~iwd~~~ 301 (424)
++++.|+. |++||+++
T Consensus 313 as~s~Dg~-v~~W~~~~ 328 (330)
T 2hes_X 313 ATGGDDGI-VNFWSLEK 328 (330)
T ss_dssp EEEETTSE-EEEEEC--
T ss_pred EEecCCCc-EEEEEecc
Confidence 99999999 99999864
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-40 Score=292.13 Aligned_cols=306 Identities=31% Similarity=0.473 Sum_probs=237.2
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEE
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMI 84 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 84 (424)
.+.+|.+.|++++|+|||++||+|++++++||++++++....... ..+..+++.++++.+++++++ |++|++
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------d~~v~i 85 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV------KEVVHI 85 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS------TTEEEE
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC------ccEEEE
Confidence 357899999999999999999999999999999988776544333 357889999999999887765 689999
Q ss_pred EECCCCcEEEEEeecCCeEEEEecCCceEEEeeccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEe-eccC
Q psy3710 85 WDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFP-GRKS 163 (424)
Q Consensus 85 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~d 163 (424)
||..+++.+..+.+...|.+++++++...++.++.|++||+....+.+..+.. +..++++ ++ .+++++ |+.+
T Consensus 86 Wd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~--s~--~~la~~sg~~~ 158 (355)
T 3vu4_A 86 WDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEF--SN--GLLVYSNEFNL 158 (355)
T ss_dssp EETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEE--ET--TEEEEEESSCT
T ss_pred EECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEE--Ec--cEEEEeCCCcC
Confidence 99999999999999999999999999988888999999999733256655554 3334444 44 667765 7899
Q ss_pred CeEEEEeCCCCC--------------CC-CcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecce
Q psy3710 164 GHVHLVDLADPE--------------RP-PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGL 228 (424)
Q Consensus 164 g~i~i~d~~~~~--------------~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~ 228 (424)
|.|++||+.++. .+ ...+.+|.++|.+++|+|+|++|++++.|++.|++||+++++++..+..+
T Consensus 159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g- 237 (355)
T 3vu4_A 159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG- 237 (355)
T ss_dssp TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT-
T ss_pred cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC-
Confidence 999999999752 12 67788999999999999999999999999932999999988877665411
Q ss_pred eeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeee
Q psy3710 229 CVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNEL 308 (424)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~ 308 (424)
.|...|.+++|+|++++|++++.|++ |++||++.+.....
T Consensus 238 --------------------------------------~h~~~v~~~~~s~~~~~l~s~s~d~~-v~iw~~~~~~~~~~- 277 (355)
T 3vu4_A 238 --------------------------------------LDRADVVDMKWSTDGSKLAVVSDKWT-LHVFEIFNDQDNKR- 277 (355)
T ss_dssp --------------------------------------TCCSCEEEEEECTTSCEEEEEETTCE-EEEEESSCCSCCCS-
T ss_pred --------------------------------------CCCCcEEEEEECCCCCEEEEEECCCE-EEEEEccCCCCccc-
Confidence 38899999999999999999999999 99999976521110
Q ss_pred ccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCC---CceEEEEecCCCeEEEEecc
Q psy3710 309 RRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSD---PPCICAFGADSNSIIVICAD 385 (424)
Q Consensus 309 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~l~~~~~d 385 (424)
...... +.|.+....|.+..+..+.. +...++|++|+++|++++.|
T Consensus 278 ---------------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~d 326 (355)
T 3vu4_A 278 ---------------------------HALKGW----INMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHT 326 (355)
T ss_dssp ---------------------------EETTTT----EECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTT
T ss_pred ---------------------------ccccce----eeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCC
Confidence 000000 23444455566655555433 34789999999999999999
Q ss_pred CcEEEEEecCCc
Q psy3710 386 GSYYKFMFNSKG 397 (424)
Q Consensus 386 g~v~~~~~~~~~ 397 (424)
|.+++|++..++
T Consensus 327 g~~~~~~~~~~~ 338 (355)
T 3vu4_A 327 RMIETFKVVFDD 338 (355)
T ss_dssp TEEEEEEEEEET
T ss_pred CeEEEEEEEcCC
Confidence 999999998543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=295.75 Aligned_cols=313 Identities=11% Similarity=0.127 Sum_probs=233.9
Q ss_pred cccccCCceEEEEECC-CCCeeEeecCCe-EEEEeCCcCccccccc-------------ccCCCeeeEEEec-cCceEEE
Q psy3710 5 TSSTYKNGLLYAGFNQ-DQGCFACGMEDG-FRIYNCDPLKEKERQD-------------FTDGGLGHVEMLF-RCNYLAL 68 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~-~g~~la~g~~~~-i~iw~~~~~~~~~~~~-------------~~~~~i~~~~~~~-~~~~l~~ 68 (424)
.+.+|.+.|++++|+| ++++|++|+.++ |++||+.+.+...... .|.+.|.+++|+| ++..+++
T Consensus 38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence 3678999999999999 999999999888 9999998877644332 4789999999999 6678887
Q ss_pred EeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCc---eEEEe---eccEEEEeecCCCceeEEEeeCCCCC
Q psy3710 69 VGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDK---IVVVL---EGLIKVYTFIQCPQQLHVFETNPNPK 142 (424)
Q Consensus 69 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~ 142 (424)
++ .|+.|++||+.+++.+..+.+...+.++.+++.. .++++ ++.|++||++ .++.+..+..|..
T Consensus 118 ~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-~~~~~~~~~~~~~-- 187 (408)
T 4a11_B 118 SS-------FDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK-SGSCSHILQGHRQ-- 187 (408)
T ss_dssp EE-------TTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS-SSCCCEEECCCCS--
T ss_pred Ee-------CCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC-CcceeeeecCCCC--
Confidence 77 5899999999999999999999999999998854 35554 8999999997 6777788877764
Q ss_pred eeEEEeecCCCCe-EEEeeccCCeEEEEeCCCCCCCCccc---------------ccccCCeEEEEEccCCCEEEEEecC
Q psy3710 143 GLCVLCPNSNNSL-LAFPGRKSGHVHLVDLADPERPPLDI---------------AAHEAPLSCIALNQTGTRLATASYK 206 (424)
Q Consensus 143 ~~~~~~~~~~~~~-l~~~~~~dg~i~i~d~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~~~d 206 (424)
.+.+++++|+++. +++ |+.||.|++||++........+ ..|...|.+++|+|++++|++++.|
T Consensus 188 ~v~~~~~~~~~~~ll~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 266 (408)
T 4a11_B 188 EILAVSWSPRYDYILAT-ASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD 266 (408)
T ss_dssp CEEEEEECSSCTTEEEE-EETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT
T ss_pred cEEEEEECCCCCcEEEE-EcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCC
Confidence 4889999999996 555 9999999999998764333333 6789999999999999999999999
Q ss_pred CcEEEEEECCCcceeeEEecc-------eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcC
Q psy3710 207 GTLIRVFDTGSGQKLNELRRG-------LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ 279 (424)
Q Consensus 207 ~~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 279 (424)
+. |++||+++++....+... .............++.++.++.|++||+.+++ ....+.+|...|++++|+|
T Consensus 267 g~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~s~ 344 (408)
T 4a11_B 267 NR-MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE-QITMLKGHYKTVDCCVFQS 344 (408)
T ss_dssp SC-EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC-EEEEECCCSSCEEEEEEET
T ss_pred Ce-EEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc-ceeeeccCCCeEEEEEEcC
Confidence 99 999999998766544322 11222233333334447889999999999876 4567778999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEECCCCceeeeec---------c-CCcEEEEEeCCCcEEEEEccc
Q psy3710 280 TGTRLATASYKGTLIRVFDTGSGQKLNELR---------R-DSSYLCVSSDHGTVHVFSVDE 331 (424)
Q Consensus 280 ~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~---------~-~~~~l~~~~~d~~i~iw~~~~ 331 (424)
++++|++++.||. |++||+++++.+.... + ....+.+.+.++.+++|+...
T Consensus 345 ~~~~l~s~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 345 NFQELYSGSRDCN-ILAWVPSLYEPVPDDDETTTKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp TTTEEEEEETTSC-EEEEEECC----------------------------------------
T ss_pred CCCEEEEECCCCe-EEEEeCCCCCccCCCCceEeccccccccceeecccCccCceeecCCcc
Confidence 9999999999999 9999999988776532 1 334566777899999998764
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-42 Score=311.23 Aligned_cols=310 Identities=14% Similarity=0.126 Sum_probs=251.1
Q ss_pred ccCCceEEEEECCCCC-eeEee----------cCCe-EEEEeCCcCccc--ccccccCCCeeeEEEeccCceEEEEeCCc
Q psy3710 8 TYKNGLLYAGFNQDQG-CFACG----------MEDG-FRIYNCDPLKEK--ERQDFTDGGLGHVEMLFRCNYLALVGGGT 73 (424)
Q Consensus 8 ~h~~~V~~~~~s~~g~-~la~g----------~~~~-i~iw~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 73 (424)
.+...|.+++|+|+|+ +|++| +.++ |+||++.+++.. .....|...+.+++|+|+++++++++
T Consensus 10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--- 86 (416)
T 2pm9_A 10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGAL--- 86 (416)
T ss_dssp CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEE---
T ss_pred hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEc---
Confidence 3556799999999997 88888 7777 999999887632 22234688999999999999999988
Q ss_pred CCCcCCCeEEEEECCC----CcEEEEEe-ecCCeEEEEecCC-ceEEEe---eccEEEEeecCCCc------eeEE---E
Q psy3710 74 HPKYPNNRVMIWDDLK----KQVVICLE-FNAPVKGVRLRRD-KIVVVL---EGLIKVYTFIQCPQ------QLHV---F 135 (424)
Q Consensus 74 ~~~~~d~~i~iwd~~~----~~~~~~~~-~~~~v~~~~~~~~-~~~~~~---~~~i~v~~~~~~~~------~~~~---~ 135 (424)
.|+.|++||+.+ .+.+..+. |...|.+++|+|+ +.++++ |+.|++||+. ..+ .... .
T Consensus 87 ----~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~ 161 (416)
T 2pm9_A 87 ----DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN-KCTESPSNYTPLTPGQS 161 (416)
T ss_dssp ----SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT-TTSSCTTTCCCBCCCCS
T ss_pred ----cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC-CCccccccccccccccc
Confidence 589999999987 34666666 8899999999998 655554 8999999997 333 2222 2
Q ss_pred eeCCCCCeeEEEeecCC-CCeEEEeeccCCeEEEEeCCCCCCCCcccccc------cCCeEEEEEccCC-CEEEEEecCC
Q psy3710 136 ETNPNPKGLCVLCPNSN-NSLLAFPGRKSGHVHLVDLADPERPPLDIAAH------EAPLSCIALNQTG-TRLATASYKG 207 (424)
Q Consensus 136 ~~~~~~~~~~~~~~~~~-~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~d~ 207 (424)
..|. ..+.+++|+|+ +.++++ ++.||.|++||++++ +....+..| ...|.+++|+|++ .++++++.|+
T Consensus 162 ~~~~--~~v~~~~~~~~~~~~l~~-~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 237 (416)
T 2pm9_A 162 MSSV--DEVISLAWNQSLAHVFAS-AGSSNFASIWDLKAK-KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD 237 (416)
T ss_dssp CCSS--CCCCEEEECSSCTTEEEE-ESSSSCEEEEETTTT-EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS
T ss_pred cCCC--CCeeEEEeCCCCCcEEEE-EcCCCCEEEEECCCC-CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC
Confidence 3333 45788999999 667776 999999999999986 555555555 7899999999997 6899999998
Q ss_pred ---cEEEEEECCCc-ceeeEEe-c---ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcC
Q psy3710 208 ---TLIRVFDTGSG-QKLNELR-R---GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ 279 (424)
Q Consensus 208 ---~~i~iwd~~~~-~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 279 (424)
. |++||++++ +++..+. . .+..++++|.+..++++++.|+.|++||+++++ ....+..|...|.+++|+|
T Consensus 238 ~~~~-i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~-~~~~~~~~~~~v~~~~~s~ 315 (416)
T 2pm9_A 238 NDPS-ILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE-QLSQFPARGNWCFKTKFAP 315 (416)
T ss_dssp SSCC-CCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC-EEEEEECSSSCCCCEEECT
T ss_pred CCce-EEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc-cceeecCCCCceEEEEECC
Confidence 9 999999986 5555555 3 378889999555666669999999999999875 4567779999999999999
Q ss_pred CC-CEEEEEeCCCcEEEEEECCCCce-----------------------------------------------eeeeccC
Q psy3710 280 TG-TRLATASYKGTLIRVFDTGSGQK-----------------------------------------------LNELRRD 311 (424)
Q Consensus 280 ~~-~~l~~~~~d~~~i~iwd~~~~~~-----------------------------------------------~~~~~~~ 311 (424)
++ .+|++++.|+. |++||+.+++. -..|+|+
T Consensus 316 ~~~~~l~s~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 394 (416)
T 2pm9_A 316 EAPDLFACASFDNK-IEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFG 394 (416)
T ss_dssp TCTTEEEECCSSSE-EEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETT
T ss_pred CCCCEEEEEecCCc-EEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeC
Confidence 98 89999999999 99999976542 1237889
Q ss_pred CcEEEEEeCCCcEEEEEcccc
Q psy3710 312 SSYLCVSSDHGTVHVFSVDEA 332 (424)
Q Consensus 312 ~~~l~~~~~d~~i~iw~~~~~ 332 (424)
|++|++++.|+.|+||++.+.
T Consensus 395 g~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 395 GKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp TEEECBCTTSSCBCCBCCCCC
T ss_pred CeEEEEeCCCCeEEEEEeccC
Confidence 999999999999999999863
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=293.61 Aligned_cols=274 Identities=13% Similarity=0.186 Sum_probs=225.7
Q ss_pred EEEeecCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCC----------------CCCeeEEEeecCCCCe
Q psy3710 94 ICLEFNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNP----------------NPKGLCVLCPNSNNSL 155 (424)
Q Consensus 94 ~~~~~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~ 155 (424)
..+.|...|.+++|+|++.++++ ++.+++|++. +++.+..+..+. ....+.+++|+|++++
T Consensus 59 ~~~~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~-~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~ 137 (393)
T 1erj_A 59 KSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVS-DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 137 (393)
T ss_dssp EEEECSSCCCEEEECTTSSEEEEECBSCEEEEETT-TCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred EecCCCCEEEEEEECCCCCEEEEEcCCcEEEEEec-CCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCE
Confidence 44568999999999999988887 8899999996 666666655432 1124789999999999
Q ss_pred EEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEec--ceeeeee
Q psy3710 156 LAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR--GLCVLCP 233 (424)
Q Consensus 156 l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~--~~~~~~~ 233 (424)
|++ |+.|+.|++||+.++ +....+.+|...|.+++|+|++++|++++.|+. |++||+++++....+.. .+..+++
T Consensus 138 l~s-~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~~~~v~~~~~ 214 (393)
T 1erj_A 138 LAT-GAEDRLIRIWDIENR-KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT-VRIWDLRTGQCSLTLSIEDGVTTVAV 214 (393)
T ss_dssp EEE-EETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred EEE-EcCCCeEEEEECCCC-cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCc-EEEEECCCCeeEEEEEcCCCcEEEEE
Confidence 998 999999999999986 667788899999999999999999999999999 99999999988777654 4778889
Q ss_pred cCCCCeEEEEeecCCeEEEEeCCCCCCCCe------eeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCc----
Q psy3710 234 NSNNSLLAFPGRKSGHVHLVDLADPERPPL------DIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ---- 303 (424)
Q Consensus 234 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~---- 303 (424)
+|....++++|+.|+.|++||++++..... ...+|...|.+++|+|++++|++++.|+. |++||+++..
T Consensus 215 ~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~-v~~wd~~~~~~~~~ 293 (393)
T 1erj_A 215 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANNKSD 293 (393)
T ss_dssp CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC--------
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEECCCCCCccc
Confidence 996666667799999999999988653211 12479999999999999999999999999 9999997632
Q ss_pred --------eee------------eeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeec
Q psy3710 304 --------KLN------------ELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIP 363 (424)
Q Consensus 304 --------~~~------------~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (424)
+.. .+++++++|++++.|+.|++||+.+++.+. .+..|
T Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~----------------------~l~~h 351 (393)
T 1erj_A 294 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL----------------------MLQGH 351 (393)
T ss_dssp -------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE----------------------EEECC
T ss_pred ccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE----------------------EECCC
Confidence 221 256789999999999999999999876532 24567
Q ss_pred CCCceEEEEec------CCCeEEEEeccCcEEEEEec
Q psy3710 364 SDPPCICAFGA------DSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 364 ~~~~~~~~~s~------~~~~l~~~~~dg~v~~~~~~ 394 (424)
.+.+..++|++ ++++|++|+.||.|++|++.
T Consensus 352 ~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 352 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 77888899876 68899999999999999986
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=319.79 Aligned_cols=359 Identities=14% Similarity=0.146 Sum_probs=282.5
Q ss_pred cccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEE
Q psy3710 46 RQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIK 121 (424)
Q Consensus 46 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~ 121 (424)
....|.+.|.+++|+|+++++++++ .|+.|++||+.+++.+..+. |..+|.+++|+|++..+++ |+.|+
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~-------~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 80 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTL-------YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEE-------TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred eeecCCCceEEEEECCCCCEEEEEe-------CCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEE
Confidence 3556889999999999999999988 57999999999999999988 8999999999999977765 89999
Q ss_pred EEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEcc-CCCEE
Q psy3710 122 VYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ-TGTRL 200 (424)
Q Consensus 122 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 200 (424)
+||+. +++.+..+..|.. .+.+++|+|++++|++ ++.||.|++||+.++......+.+|...|.+++|+| +++.+
T Consensus 81 vw~~~-~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 156 (814)
T 3mkq_A 81 VFNYN-TGEKVVDFEAHPD--YIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156 (814)
T ss_dssp EEETT-TCCEEEEEECCSS--CEEEEEECSSSSEEEE-EETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred EEECC-CCcEEEEEecCCC--CEEEEEEeCCCCEEEE-EcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEE
Confidence 99996 7788888887764 4889999999999998 999999999999876456667889999999999999 88999
Q ss_pred EEEecCCcEEEEEECCCcceeeEEec----ceeeeeecC--CCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEE
Q psy3710 201 ATASYKGTLIRVFDTGSGQKLNELRR----GLCVLCPNS--NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSC 274 (424)
Q Consensus 201 ~~~~~d~~~i~iwd~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 274 (424)
++++.|+. |++||+.+++....+.. .+..++++| ++..++ +++.||.|++||+.+++ ....+.+|...|.+
T Consensus 157 ~~~~~dg~-v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~-~~~~~~~~~~~v~~ 233 (814)
T 3mkq_A 157 ASGCLDRT-VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-TASDDLTIKIWDYQTKS-CVATLEGHMSNVSF 233 (814)
T ss_dssp EEEETTSE-EEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEE-EECTTSEEEEEETTTTE-EEEEEECCSSCEEE
T ss_pred EEEeCCCe-EEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEE-EEeCCCEEEEEECCCCc-EEEEEcCCCCCEEE
Confidence 99999999 99999998887777653 367788888 555554 59999999999998865 35667789999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEECCCCceeeee------------ccCCcE-EEEEeCCCcEEEEEccccccccccccc
Q psy3710 275 IALNQTGTRLATASYKGTLIRVFDTGSGQKLNEL------------RRDSSY-LCVSSDHGTVHVFSVDEAQKINKQSSL 341 (424)
Q Consensus 275 ~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~------------~~~~~~-l~~~~~d~~i~iw~~~~~~~~~~~~~~ 341 (424)
++|+|++++|++++.||. |++||+.+++.+..+ +|++.. +++++.++.+.+|++..+.......+.
T Consensus 234 ~~~~~~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPV 312 (814)
T ss_dssp EEECSSSSEEEEEETTSC-EEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSS
T ss_pred EEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCC
Confidence 999999999999999999 999999998877654 567663 344555778999998775443222211
Q ss_pred eeeeccCccc-----------cCCc----------eeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCCccee
Q psy3710 342 ASASFLPKYF-----------SSSW----------SFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECW 400 (424)
Q Consensus 342 ~~~~~~~~~~-----------~~~~----------~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~~ 400 (424)
.......... ...| .......+...+..++|+|+|++|++++ ||.+.+|++. .....
T Consensus 313 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~-~~~~~ 390 (814)
T 3mkq_A 313 GKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTAL-AWRNK 390 (814)
T ss_dssp SEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETT-TTEEE
T ss_pred CCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECc-ccccc
Confidence 1111000000 0000 0111223445678999999999999888 8999999975 33333
Q ss_pred eeeehhhheecCCCceeeEEE
Q psy3710 401 RDVYIQFLEMTNDSNLLSCIE 421 (424)
Q Consensus 401 ~~~~~~~~~~~~d~~~l~~~~ 421 (424)
.......+.++||+++|++++
T Consensus 391 ~~~~i~~~~~spdg~~la~~~ 411 (814)
T 3mkq_A 391 AFGKCQDFVWGPDSNSYALID 411 (814)
T ss_dssp EEEECSEEEECTTSSCEEEEC
T ss_pred CCCceEEEEEeCCCCeEEEEe
Confidence 345566788899999888774
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=288.07 Aligned_cols=288 Identities=13% Similarity=0.136 Sum_probs=222.9
Q ss_pred cEEEEEe-ecC-CeEEEEecCCceEEEe---eccEEEEeecCCCceeE-EEeeCCCCCeeEEEeecCCCCeEEEeeccCC
Q psy3710 91 QVVICLE-FNA-PVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLH-VFETNPNPKGLCVLCPNSNNSLLAFPGRKSG 164 (424)
Q Consensus 91 ~~~~~~~-~~~-~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg 164 (424)
+.+.++. |.. .|.+++|+|++.++++ |+.|++|++. ...... ......+...+.+++|+|++++|++ |+.|+
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~-~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s-~s~D~ 83 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTE-GDSWICKSVLSEGHQRTVRKVAWSPCGNYLAS-ASFDA 83 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEE-TTEEEEEEEECSSCSSCEEEEEECTTSSEEEE-EETTS
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcC-CCcceeeeeeccccCCcEEEEEECCCCCEEEE-EECCC
Confidence 3455565 666 8999999999988876 8999999997 443322 2211223355899999999999998 99999
Q ss_pred eEEEEeCCCCC-CCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcce---eeEEecc---eeeeeecCCC
Q psy3710 165 HVHLVDLADPE-RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK---LNELRRG---LCVLCPNSNN 237 (424)
Q Consensus 165 ~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~---~~~~~~~---~~~~~~~~~~ 237 (424)
.+++||+.... .....+.+|...|.+++|+|++++|++++.|+. |++||++++.. +..+..+ +..++++|++
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~-v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS-VWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ 162 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCe-EEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC
Confidence 99999988642 235678899999999999999999999999999 99999987643 3444433 7788999998
Q ss_pred CeEEEEeecCCeEEEEeCCCCCC-CCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCC--------------
Q psy3710 238 SLLAFPGRKSGHVHLVDLADPER-PPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG-------------- 302 (424)
Q Consensus 238 ~~~~~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~-------------- 302 (424)
..++ +++.|+.|++||.+.+.. ....+.+|...|++++|+|++++|++++.|++ |++|+....
T Consensus 163 ~~l~-s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~~~~~~~~~~~~~~ 240 (345)
T 3fm0_A 163 ELLA-SASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQYLPGNEQGVACSGSDPS 240 (345)
T ss_dssp SCEE-EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEEECTTCTTCCCCC---CE
T ss_pred CEEE-EEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe-EEEeccccCCCCccceeeccCCc
Confidence 7665 499999999999987642 23567799999999999999999999999999 999996321
Q ss_pred -cee-------------eeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCce
Q psy3710 303 -QKL-------------NELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPC 368 (424)
Q Consensus 303 -~~~-------------~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (424)
+++ ..|+|++..|++++.|+.|++|+...+........ . ........|...|.
T Consensus 241 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-~------------~~~~~~~~h~~~V~ 307 (345)
T 3fm0_A 241 WKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF-S------------LTAHLHQAHSQDVN 307 (345)
T ss_dssp EEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCE-E------------EEEEETTSSSSCEE
T ss_pred cceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeE-E------------EEeeecccccCcEe
Confidence 111 13568899999999999999999876542211000 0 00011235778899
Q ss_pred EEEEecCC-CeEEEEeccCcEEEEEecCC
Q psy3710 369 ICAFGADS-NSIIVICADGSYYKFMFNSK 396 (424)
Q Consensus 369 ~~~~s~~~-~~l~~~~~dg~v~~~~~~~~ 396 (424)
.++|+|++ .+|++|+.||.|++|++...
T Consensus 308 ~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 308 CVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp EEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred EeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 99999988 48999999999999999743
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=302.51 Aligned_cols=305 Identities=10% Similarity=0.076 Sum_probs=250.4
Q ss_pred CceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC
Q psy3710 11 NGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK 89 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~ 89 (424)
..+++++|+|+|++|++|+.++ |++||+.+.+.......+ ..+....++++++++++++ .|+.|++||+.+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~ 128 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGT-------TEGDIKVLDSNF 128 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEE-------TTSCEEEECTTS
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEE-------CCCCEEEEeCCC
Confidence 3455789999999999998888 999999887775544443 4445557789999999888 589999999999
Q ss_pred CcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCe
Q psy3710 90 KQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGH 165 (424)
Q Consensus 90 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~ 165 (424)
++....+. |...|.+++|+|++.++++ |+.|++||+. .++.+..+..|... +.+++|+|++++|++ ++.||.
T Consensus 129 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s-~~~d~~ 204 (420)
T 3vl1_A 129 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK-DGSNPRTLIGHRAT--VTDIAIIDRGRNVLS-ASLDGT 204 (420)
T ss_dssp CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TCCCCEEEECCSSC--EEEEEEETTTTEEEE-EETTSC
T ss_pred cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCC-CCcCceEEcCCCCc--EEEEEEcCCCCEEEE-EcCCCc
Confidence 98888775 8999999999999977765 8999999997 77778888877644 889999999999998 999999
Q ss_pred EEEEeCCCCCCCCccccc---cc---------------------CCeEEEEEccCCCEEEEEecCCcEEEEEECCCccee
Q psy3710 166 VHLVDLADPERPPLDIAA---HE---------------------APLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL 221 (424)
Q Consensus 166 i~i~d~~~~~~~~~~~~~---~~---------------------~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~ 221 (424)
|++||++++ +....+.. |. ..+.+++|+|++++|++++.|+. |++||+++++..
T Consensus 205 v~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~i~d~~~~~~~ 282 (420)
T 3vl1_A 205 IRLWECGTG-TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV-ITVHNVFSKEQT 282 (420)
T ss_dssp EEEEETTTT-EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSC-EEEEETTTCCEE
T ss_pred EEEeECCCC-ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCe-EEEEECCCCcee
Confidence 999999976 45555543 33 44555556789999999999999 999999999888
Q ss_pred eEEec----ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeecc-CCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q psy3710 222 NELRR----GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAA-HEAPLSCIALNQTGTRLATASYKGTLIRV 296 (424)
Q Consensus 222 ~~~~~----~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~~i~i 296 (424)
..+.. .+..++++|++..++++|+.||.|++||+++++.+...+.. |...|.++.+ +++++|++++.|+. |++
T Consensus 283 ~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~-v~i 360 (420)
T 3vl1_A 283 IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTS-IKL 360 (420)
T ss_dssp EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEE-EEE
T ss_pred EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCcc-EEE
Confidence 77754 37889999999977777999999999999998776666666 6778888855 57889999999999 999
Q ss_pred EECCCCcee---------------------eeeccCCc---EEEEEeCCCcEEEEEccc
Q psy3710 297 FDTGSGQKL---------------------NELRRDSS---YLCVSSDHGTVHVFSVDE 331 (424)
Q Consensus 297 wd~~~~~~~---------------------~~~~~~~~---~l~~~~~d~~i~iw~~~~ 331 (424)
|++...... ..|+|+++ .+++.+.+|.+.+|++++
T Consensus 361 w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 361 DIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 998763211 13668888 788888899999999875
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-39 Score=295.55 Aligned_cols=311 Identities=16% Similarity=0.225 Sum_probs=245.0
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEE
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVM 83 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~ 83 (424)
.+.+|.+.|.. +++++|++|++|+.++ |++||+.+++.......|.+.|.++.+. ++.+++++ .|++|+
T Consensus 113 ~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~-------~dg~i~ 182 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGS-------TDRTLK 182 (445)
T ss_dssp EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEE-------TTSCEE
T ss_pred EecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEe-------CCCeEE
Confidence 47789987643 3556789999999999 9999999998877777889999888886 66787777 589999
Q ss_pred EEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe-eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeec
Q psy3710 84 IWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGR 161 (424)
Q Consensus 84 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (424)
+||+.+++.+..+. |...|.++.++++..+.++ |+.|++||+. +++.+..+..|..+ +.++.+ ++..+++ |+
T Consensus 183 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~~~--v~~~~~--~~~~l~~-~~ 256 (445)
T 2ovr_B 183 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE-TGQCLHVLMGHVAA--VRCVQY--DGRRVVS-GA 256 (445)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESS-SCCEEEEEECCSSC--EEEEEE--CSSCEEE-EE
T ss_pred EEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECC-CCcEEEEEcCCccc--EEEEEE--CCCEEEE-Ec
Confidence 99999999999888 8899999999877655555 8999999996 77788888877654 667777 6788887 99
Q ss_pred cCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEE
Q psy3710 162 KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLA 241 (424)
Q Consensus 162 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (424)
.||.|++||++++ ..+..+.+|...|.+++| ++.++++++.|+. |++||+++++.+..+.
T Consensus 257 ~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~---------------- 316 (445)
T 2ovr_B 257 YDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS-IRVWDVETGNCIHTLT---------------- 316 (445)
T ss_dssp TTSCEEEEEGGGT-EEEEEECCCSSCEEEEEE--CSSEEEEEETTSC-EEEEETTTCCEEEEEC----------------
T ss_pred CCCEEEEEECCCC-cEeEEecCCCCceEEEEE--CCCEEEEEeCCCe-EEEEECCCCCEEEEEc----------------
Confidence 9999999999886 677788899999999999 7889999999999 9999999887766554
Q ss_pred EEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec------------
Q psy3710 242 FPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR------------ 309 (424)
Q Consensus 242 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~------------ 309 (424)
+|...+.++.++ ++++++++.|+. |++||+++++.+..+.
T Consensus 317 -------------------------~~~~~v~~~~~~--~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 368 (445)
T 2ovr_B 317 -------------------------GHQSLTSGMELK--DNILVSGNADST-VKIWDIKTGQCLQTLQGPNKHQSAVTCL 368 (445)
T ss_dssp -------------------------CCCSCEEEEEEE--TTEEEEEETTSC-EEEEETTTCCEEEEECSTTSCSSCEEEE
T ss_pred -------------------------CCcccEEEEEEe--CCEEEEEeCCCe-EEEEECCCCcEEEEEccCCCCCCCEEEE
Confidence 455556655553 457777777777 7777776666655543
Q ss_pred -cCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCc-
Q psy3710 310 -RDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGS- 387 (424)
Q Consensus 310 -~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~- 387 (424)
.+++++++++.||.|++||+.+++.+....... ...+.+.+..++|+|++.+|++|+.||+
T Consensus 369 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~s~~~~~la~~~~dg~~ 431 (445)
T 2ovr_B 369 QFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE-----------------SGGSGGVVWRIRASNTKLVCAVGSRNGTE 431 (445)
T ss_dssp EECSSEEEEEETTSEEEEEETTTCCEEEEEEECT-----------------TGGGTCEEEEEEECSSEEEEEEECSSSSS
T ss_pred EECCCEEEEEeCCCeEEEEECCCCceeeeeeccc-----------------cCCCCceEEEEEecCCEEEEEEcccCCCC
Confidence 245677777778888888877766543321100 0124567889999999999999999998
Q ss_pred ---EEEEEecCC
Q psy3710 388 ---YYKFMFNSK 396 (424)
Q Consensus 388 ---v~~~~~~~~ 396 (424)
+.+||+..+
T Consensus 432 ~~~l~v~df~~~ 443 (445)
T 2ovr_B 432 ETKLLVLDFDVD 443 (445)
T ss_dssp CCEEEEEECCCC
T ss_pred ccEEEEEECCCC
Confidence 999999744
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=284.01 Aligned_cols=309 Identities=11% Similarity=0.105 Sum_probs=252.0
Q ss_pred cCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC-CcEEEEEeecCCeEEEEecCCceEEEe--eccEEEEeec
Q psy3710 50 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK-KQVVICLEFNAPVKGVRLRRDKIVVVL--EGLIKVYTFI 126 (424)
Q Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~ 126 (424)
+.+.+..++++|+++.+++... ++.+..|+... .+.+..+.|...|.+++|+|++.++++ ++.|++|++.
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~ 80 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFP-------PDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDIS 80 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCC-------TTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETT
T ss_pred cCCceeEEEECCCCCEEEeecC-------CCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECC
Confidence 4567889999999999987763 34555554433 344455568999999999999987776 9999999996
Q ss_pred CCC--ceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCC-CCcccccccCCeEEEEEccCCCEEEEE
Q psy3710 127 QCP--QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER-PPLDIAAHEAPLSCIALNQTGTRLATA 203 (424)
Q Consensus 127 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~ 203 (424)
... .....+....+...+.+++|+|+++++++ ++.||.|++||+.++.. ....+..|...|.+++|+|++++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 159 (337)
T 1gxr_A 81 HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIV-GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159 (337)
T ss_dssp STTCCSCSEEEECSCTTSBEEEEEECTTSSEEEE-EESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred CCCceeeeecccccCCCCcEEEEEEcCCCCEEEE-EcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEE
Confidence 322 23444443344566999999999999998 99999999999998621 345677899999999999999999999
Q ss_pred ecCCcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCC
Q psy3710 204 SYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT 280 (424)
Q Consensus 204 ~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 280 (424)
+.|+. |++||+++++.+..+..+ +..++++|++..++. ++.||.|++||+++++.. .. ..+...+.+++|+|+
T Consensus 160 ~~dg~-v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~-~~-~~~~~~v~~~~~s~~ 235 (337)
T 1gxr_A 160 CSDGN-IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT-GGLDNTVRSWDLREGRQL-QQ-HDFTSQIFSLGYCPT 235 (337)
T ss_dssp ETTSC-EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE-EETTSEEEEEETTTTEEE-EE-EECSSCEEEEEECTT
T ss_pred eCCCc-EEEEeCCCCceeeeeecccCceEEEEECCCCCEEEE-EecCCcEEEEECCCCceE-ee-ecCCCceEEEEECCC
Confidence 99999 999999999988888654 778899998876665 889999999999986632 22 257889999999999
Q ss_pred CCEEEEEeCCCcEEEEEECCCCceee-----------eeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCc
Q psy3710 281 GTRLATASYKGTLIRVFDTGSGQKLN-----------ELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPK 349 (424)
Q Consensus 281 ~~~l~~~~~d~~~i~iwd~~~~~~~~-----------~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 349 (424)
+++|++++.++. |++||+++++... .|+|++++|++++.||.|++||+.+++.+.
T Consensus 236 ~~~l~~~~~~~~-i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~------------- 301 (337)
T 1gxr_A 236 GEWLAVGMESSN-VEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF------------- 301 (337)
T ss_dssp SSEEEEEETTSC-EEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-------------
T ss_pred CCEEEEEcCCCc-EEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE-------------
Confidence 999999999999 9999999876543 367899999999999999999999876531
Q ss_pred cccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 350 YFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
...+...+..++|+|++++|++++.||.|++|++.
T Consensus 302 ----------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 302 ----------QSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp ----------EEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred ----------EecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 12245678899999999999999999999999973
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-39 Score=309.25 Aligned_cols=301 Identities=13% Similarity=0.135 Sum_probs=234.4
Q ss_pred cccccCCceEEEEECCCC-CeeEeecCCe-EEEEeCCcCcc-----cccccccCCCeeeEEEeccCceEEEEeCCcCCCc
Q psy3710 5 TSSTYKNGLLYAGFNQDQ-GCFACGMEDG-FRIYNCDPLKE-----KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKY 77 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g-~~la~g~~~~-i~iw~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~ 77 (424)
.+.+|.+.|++++|+|++ ++|++|+.|+ |++|++.+... ......|.+.|.+++|+++++++++++
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs------- 449 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGS------- 449 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEE-------
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEe-------
Confidence 478999999999999875 7899999988 99999876433 233556899999999999999999988
Q ss_pred CCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEee--CCCCCeeEEEeecC
Q psy3710 78 PNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFET--NPNPKGLCVLCPNS 151 (424)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 151 (424)
.|++|++||+.+++.+..+. |...|.+++|+|++..+++ |+.|++||.. .. ....+.. ..+...+.+++|+|
T Consensus 450 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~-~~-~~~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 450 WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL-GE-CKYTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SC-EEEEECSSTTSCSSCEEEEEECS
T ss_pred CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC-CC-cceeeccCCCCCCCcEEEEEEeC
Confidence 68999999999999998887 8999999999999977665 8999999975 22 2222211 22334588899999
Q ss_pred CC--CeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEeccee
Q psy3710 152 NN--SLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLC 229 (424)
Q Consensus 152 ~~--~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~ 229 (424)
++ ..+++ |+.|+.|++||+++. +....+.+|.+.|.+++|+|++++|++++.|+. |++||+++++.+..+
T Consensus 528 ~~~~~~l~s-~s~d~~v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~~~~~~~~~----- 599 (694)
T 3dm0_A 528 NTLQPTIVS-ASWDKTVKVWNLSNC-KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLAEGKKLYSL----- 599 (694)
T ss_dssp CSSSCEEEE-EETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETTTTEEEECC-----
T ss_pred CCCcceEEE-EeCCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCCCceEEEe-----
Confidence 87 45776 999999999999986 667788899999999999999999999999999 999999887654332
Q ss_pred eeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec
Q psy3710 230 VLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR 309 (424)
Q Consensus 230 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 309 (424)
.+...|.+++|+|++.+|++++ ++. |++||+++++.+..+.
T Consensus 600 -------------------------------------~~~~~v~~~~~sp~~~~l~~~~-~~~-i~iwd~~~~~~~~~~~ 640 (694)
T 3dm0_A 600 -------------------------------------EANSVIHALCFSPNRYWLCAAT-EHG-IKIWDLESKSIVEDLK 640 (694)
T ss_dssp -------------------------------------BCSSCEEEEEECSSSSEEEEEE-TTE-EEEEETTTTEEEEEEC
T ss_pred -------------------------------------cCCCcEEEEEEcCCCcEEEEEc-CCC-EEEEECCCCCChhhhc
Confidence 2345689999999998877765 555 9999999998887776
Q ss_pred cCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEE
Q psy3710 310 RDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYY 389 (424)
Q Consensus 310 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~ 389 (424)
.+.......... .+.. ....+.-.++.++|+|||++|++|+.||.|+
T Consensus 641 ~~~~~~~~~~~~---------~~~~------------------------~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~ 687 (694)
T 3dm0_A 641 VDLKAEAEKADN---------SGPA------------------------ATKRKVIYCTSLNWSADGSTLFSGYTDGVIR 687 (694)
T ss_dssp CCCC-------------------------------------------------CCCCEEEEEECTTSSEEEEEETTSEEE
T ss_pred cccccccccccc---------cccc------------------------cCCceeEEeeeEEEcCCCCEEEEEcCCCeEE
Confidence 543221100000 0000 0000112356889999999999999999999
Q ss_pred EEEec
Q psy3710 390 KFMFN 394 (424)
Q Consensus 390 ~~~~~ 394 (424)
+|++.
T Consensus 688 iW~i~ 692 (694)
T 3dm0_A 688 VWGIG 692 (694)
T ss_dssp EEEC-
T ss_pred EEecc
Confidence 99985
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-40 Score=299.73 Aligned_cols=286 Identities=13% Similarity=0.110 Sum_probs=220.8
Q ss_pred ccccCCceEEEEECCC-CCeeEeecCCe-EEEEeCCcCcccc--cccccCCCeeeEEEec-cCceEEEEeCCcCCCcCCC
Q psy3710 6 SSTYKNGLLYAGFNQD-QGCFACGMEDG-FRIYNCDPLKEKE--RQDFTDGGLGHVEMLF-RCNYLALVGGGTHPKYPNN 80 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~-g~~la~g~~~~-i~iw~~~~~~~~~--~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~~~~~d~ 80 (424)
..+|...|+|++|+|. +.+||+|+.+| |+|||+.+.+... ....|.+.|.+++|+| ++++|++++ .|+
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s-------~D~ 187 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASS-------MEG 187 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEEC-------SSS
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEe-------CCC
Confidence 4578999999999994 67899999999 9999998776533 3445899999999998 577888777 589
Q ss_pred eEEEEECCCCcEEEEEe---ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCC
Q psy3710 81 RVMIWDDLKKQVVICLE---FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNS 154 (424)
Q Consensus 81 ~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (424)
+|++||++++....... +...+.+++|+|++.++++ |+.|++||++ ++.+..+..|.. .+.+++|+|++.
T Consensus 188 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~--~~~~~~~~~h~~--~v~~v~~~p~~~ 263 (435)
T 4e54_B 188 TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD--GKELWNLRMHKK--KVTHVALNPCCD 263 (435)
T ss_dssp CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS--SCBCCCSBCCSS--CEEEEEECTTCS
T ss_pred EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC--cceeEEEecccc--eEEeeeecCCCc
Confidence 99999997655443333 2346789999999987776 8999999985 455666777764 488999999988
Q ss_pred eEEEeeccCCeEEEEeCCCCCC--CCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc-----
Q psy3710 155 LLAFPGRKSGHVHLVDLADPER--PPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG----- 227 (424)
Q Consensus 155 ~l~~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~----- 227 (424)
.++++|+.|+.|++||+++... ......+|...|.+++|+|+|++|++++.|+. |++||+++++....+..+
T Consensus 264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~-i~iwd~~~~~~~~~~~~~~~~~~ 342 (435)
T 4e54_B 264 WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE-IRVYSASQWDCPLGLIPHPHRHF 342 (435)
T ss_dssp SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC-EEEEESSSSSSEEEECCCCCCCC
T ss_pred eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE-EEEEECCCCccceEEeccccccc
Confidence 6555599999999999987532 22344689999999999999999999999999 999999998877665432
Q ss_pred ----eeeeeecCCCCeEEEE-----------eecCCeEEEEeCCCCCCCCeeeccCCCCeEEE-EEcCCCCEEEEEeCCC
Q psy3710 228 ----LCVLCPNSNNSLLAFP-----------GRKSGHVHLVDLADPERPPLDIAAHEAPLSCI-ALNQTGTRLATASYKG 291 (424)
Q Consensus 228 ----~~~~~~~~~~~~~~~~-----------~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~d~ 291 (424)
.....++|.+..++++ +..++.|++||..+++.......+|...|.++ +|+|+|++|++|+ |+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~ 421 (435)
T 4e54_B 343 QHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GY 421 (435)
T ss_dssp SSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SS
T ss_pred ccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CC
Confidence 1123455555555443 33456899999998875444556788899887 6999999999876 77
Q ss_pred cEEEEEECCCCcee
Q psy3710 292 TLIRVFDTGSGQKL 305 (424)
Q Consensus 292 ~~i~iwd~~~~~~~ 305 (424)
. |+||++++++..
T Consensus 422 ~-i~iW~~~~gk~r 434 (435)
T 4e54_B 422 H-ILIWSQQEARTR 434 (435)
T ss_dssp E-EEECCCC-----
T ss_pred c-EEEEECCcCeee
Confidence 8 999999988754
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-40 Score=302.92 Aligned_cols=325 Identities=11% Similarity=0.066 Sum_probs=225.9
Q ss_pred ccCCceEEEEECCCC---------CeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcC
Q psy3710 8 TYKNGLLYAGFNQDQ---------GCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYP 78 (424)
Q Consensus 8 ~h~~~V~~~~~s~~g---------~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~ 78 (424)
.+.+.|.+++|+|++ ++||+|+.+... . ..+|+++.+++++ .
T Consensus 131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~----------------~------~~~~~~~~laS~s-------~ 181 (524)
T 2j04_B 131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD----------------E------PLNEHLEMFDKEK-------H 181 (524)
T ss_dssp ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------------
T ss_pred ECCCceeEEEecccCCCCccCcCCeEEEEEEecccC----------------C------ccchhhhhhccCC-------C
Confidence 367889999999987 788888755320 0 1246677776666 5
Q ss_pred CCeEEEEECCCCcEE----EEEe-ecCCeEEEEecCC------ceEEEe---eccEEEEeecCCCc----------eeEE
Q psy3710 79 NNRVMIWDDLKKQVV----ICLE-FNAPVKGVRLRRD------KIVVVL---EGLIKVYTFIQCPQ----------QLHV 134 (424)
Q Consensus 79 d~~i~iwd~~~~~~~----~~~~-~~~~v~~~~~~~~------~~~~~~---~~~i~v~~~~~~~~----------~~~~ 134 (424)
|++|+|||+.+++.. ..+. +.+.|.+++|+|+ +.++++ |++|++||+..... +...
T Consensus 182 D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~ 261 (524)
T 2j04_B 182 SSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLT 261 (524)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEE
T ss_pred CceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEE
Confidence 899999999877642 3344 4688999999996 345664 89999999963211 1234
Q ss_pred EeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEE--EEccCC-CEEEEEecCCcEEE
Q psy3710 135 FETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCI--ALNQTG-TRLATASYKGTLIR 211 (424)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~~i~ 211 (424)
+..|. ..+.+++|++++ .|++ |+.||+|++||++++..+...+.+|...|.++ +|+|++ .+|++++.|++ |+
T Consensus 262 l~~h~--~~v~sv~~s~~~-~las-gs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~t-vk 336 (524)
T 2j04_B 262 LSLAD--SLITTFDFLSPT-TVVC-GFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGY-FY 336 (524)
T ss_dssp ECCTT--TCEEEEEESSSS-EEEE-EETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSE-EE
T ss_pred EEcCC--CCEEEEEecCCC-eEEE-EeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCe-EE
Confidence 55555 448889998864 6777 99999999999997645566788999999999 578887 89999999999 99
Q ss_pred EEECCCcceeeEEecc-----eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEE
Q psy3710 212 VFDTGSGQKLNELRRG-----LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLAT 286 (424)
Q Consensus 212 iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 286 (424)
+||++++++...+..+ +..++++|++..++ +++.|++|++||++++.. ...+.+|.+.|++++|+|+|++|++
T Consensus 337 lWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~-s~~~d~tv~lwd~~~~~~-~~~l~gH~~~V~sva~Sp~g~~l~S 414 (524)
T 2j04_B 337 IFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYI-YSDGASSLRAVPSRAAFA-VHPLVSRETTITAIGVSRLHPMVLA 414 (524)
T ss_dssp EECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEE-EECSSSEEEEEETTCTTC-CEEEEECSSCEEEEECCSSCCBCEE
T ss_pred EEECCCCCcccccccccccCcccceEeCCCcCeEE-EeCCCCcEEEEECccccc-ceeeecCCCceEEEEeCCCCCeEEE
Confidence 9999998776655433 45789999988754 588999999999998764 4566789999999999999999999
Q ss_pred EeCCCcEEEEEECCCCceeee-----------------eccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCc
Q psy3710 287 ASYKGTLIRVFDTGSGQKLNE-----------------LRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPK 349 (424)
Q Consensus 287 ~~~d~~~i~iwd~~~~~~~~~-----------------~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 349 (424)
|+.|++ |++||+..+ .+.. |+|+++. +++|+... +....
T Consensus 415 gs~Dgt-v~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~---------~~~~~~~~---~~~~~---------- 470 (524)
T 2j04_B 415 GSADGS-LIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDK---------YRIDSSYE---VYPLT---------- 470 (524)
T ss_dssp EETTTE-EECCBSCSS-TTTCC------CCCCEEEECBCCSSSCE---------EEECCCCC---CCC------------
T ss_pred EECCCE-EEEEechHh-hccccccCccceeeeEEEEeccCCCCCe---------EEccCCce---ecccc----------
Confidence 999999 999998643 2211 2233331 22322100 00000
Q ss_pred cccCCceeeEEeecCCCceEEEEecCCC---eEEEEeccCcEEEEEec
Q psy3710 350 YFSSSWSFCKFQIPSDPPCICAFGADSN---SIIVICADGSYYKFMFN 394 (424)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~l~~~~~dg~v~~~~~~ 394 (424)
...-....+..|...|..++|+|+++ .|++|+.||.|+||++.
T Consensus 471 --~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 471 --VNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp -------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred --cCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 00011233556778899999999964 99999999999999986
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-38 Score=278.06 Aligned_cols=302 Identities=11% Similarity=0.199 Sum_probs=227.9
Q ss_pred EeecCCe---EEEEeCCcC--cccccccccCCCeeeEEEecc-CceEEEEeCCcCCCcCCCeEEEEECCCCc-----EEE
Q psy3710 26 ACGMEDG---FRIYNCDPL--KEKERQDFTDGGLGHVEMLFR-CNYLALVGGGTHPKYPNNRVMIWDDLKKQ-----VVI 94 (424)
Q Consensus 26 a~g~~~~---i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~~~~~d~~i~iwd~~~~~-----~~~ 94 (424)
++|.+.| +.++...+. +....+..|.+.|.+++|+|+ +++|++++ .|++|+|||+.+++ ...
T Consensus 8 ~~g~d~g~~~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s-------~D~~i~vWd~~~~~~~~~~~~~ 80 (340)
T 4aow_A 8 SSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSAS-------RDKTIIMWKLTRDETNYGIPQR 80 (340)
T ss_dssp ------------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEE-------TTSCEEEEEECCSSSCSEEEEE
T ss_pred ccccCCCCccEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEc-------CCCeEEEEECCCCCcccceeeE
Confidence 3444444 444444333 334446779999999999998 57888888 68999999987643 445
Q ss_pred EEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEe
Q psy3710 95 CLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVD 170 (424)
Q Consensus 95 ~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d 170 (424)
.+. |...|.+++|+|++.++++ |+.|++|+.. ..........+. .......+++++..+++ |+.|+.+++||
T Consensus 81 ~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~l~s-~s~d~~~~~~d 156 (340)
T 4aow_A 81 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT-TGTTTRRFVGHT--KDVLSVAFSSDNRQIVS-GSRDKTIKLWN 156 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEEECCS--SCEEEEEECTTSSCEEE-EETTSCEEEEC
T ss_pred EEeCCCCCEEEEEECCCCCEEEEEcccccceEEeec-ccceeeeecCCC--CceeEEEEeecCcccee-ecCCCeEEEEE
Confidence 555 7899999999999988776 8999999986 555555555544 33667788999999998 99999999999
Q ss_pred CCCCCCCCcccccccCCeEEEEEccCC--CEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCC
Q psy3710 171 LADPERPPLDIAAHEAPLSCIALNQTG--TRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSG 248 (424)
Q Consensus 171 ~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg 248 (424)
+...........+|...+..++|++++ ..+++++.|+. |++||+++++.+..+.
T Consensus 157 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~-i~i~d~~~~~~~~~~~----------------------- 212 (340)
T 4aow_A 157 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL-VKVWNLANCKLKTNHI----------------------- 212 (340)
T ss_dssp TTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC-EEEEETTTTEEEEEEC-----------------------
T ss_pred eCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE-EEEEECCCCceeeEec-----------------------
Confidence 987544455677899999999999865 57889999999 9999998877655443
Q ss_pred eEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeee-----------ccCCcEEEE
Q psy3710 249 HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNEL-----------RRDSSYLCV 317 (424)
Q Consensus 249 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-----------~~~~~~l~~ 317 (424)
+|..+|++++|+|++++|++++.|+. |++||+++++.+..+ +|++ .+++
T Consensus 213 ------------------~h~~~v~~~~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~ 272 (340)
T 4aow_A 213 ------------------GHTGYLNTVTVSPDGSLCASGGKDGQ-AMLWDLNEGKHLYTLDGGDIINALCFSPNR-YWLC 272 (340)
T ss_dssp ------------------CCSSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEECSSCEEEEEECSSS-SEEE
T ss_pred ------------------CCCCcEEEEEECCCCCEEEEEeCCCe-EEEEEeccCceeeeecCCceEEeeecCCCC-ceee
Confidence 68889999999999999999999999 999999998887764 3454 4556
Q ss_pred EeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecC
Q psy3710 318 SSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 318 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~ 395 (424)
++.|+.|++||++++..+....... .......|...|+.++|+||+++|++|+.||.|++|++..
T Consensus 273 ~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 273 AATGPSIKIWDLEGKIIVDELKQEV-------------ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp EEETTEEEEEETTTTEEEEEECCC--------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred ccCCCEEEEEECCCCeEEEeccccc-------------eeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 6779999999998876554332211 1112345678899999999999999999999999999973
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=278.23 Aligned_cols=282 Identities=12% Similarity=0.098 Sum_probs=219.0
Q ss_pred EEEEEe-ecCCeEEEEe-----cC-CceEEEe---eccEEEEeecCC------CceeEEEeeCCCCCeeEEEeecCCCCe
Q psy3710 92 VVICLE-FNAPVKGVRL-----RR-DKIVVVL---EGLIKVYTFIQC------PQQLHVFETNPNPKGLCVLCPNSNNSL 155 (424)
Q Consensus 92 ~~~~~~-~~~~v~~~~~-----~~-~~~~~~~---~~~i~v~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (424)
....+. |.+.|.+++| ++ ++.++++ |+.|++||+... +.....+.+|.. .+.+++++|++.+
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~--~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH--FVSDLALSQENCF 90 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSS--CEEEEEECSSTTE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCC--ceEEEEECCCCCE
Confidence 344555 8999999999 66 7777765 899999999632 234455666664 4889999999999
Q ss_pred EEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe------ccee
Q psy3710 156 LAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR------RGLC 229 (424)
Q Consensus 156 l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~------~~~~ 229 (424)
+++ |+.|+.|++||++++ +....+.+|...|.+++|+|++++|++++.|+. |++||+.... ..... ..+.
T Consensus 91 l~s-~s~D~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~-i~~wd~~~~~-~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 91 AIS-SSWDKTLRLWDLRTG-TTYKRFVGHQSEVYSVAFSPDNRQILSAGAERE-IKLWNILGEC-KFSSAEKENHSDWVS 166 (343)
T ss_dssp EEE-EETTSEEEEEETTSS-CEEEEEECCCSCEEEEEECSSTTEEEEEETTSC-EEEEESSSCE-EEECCTTTSCSSCEE
T ss_pred EEE-EcCCCcEEEEECCCC-cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCE-EEEEeccCCc-eeeeecccCCCceee
Confidence 998 999999999999986 677788999999999999999999999999999 9999997433 22222 2267
Q ss_pred eeeecCCCC---------eEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 230 VLCPNSNNS---------LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 230 ~~~~~~~~~---------~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
.++++|.+. .++++++.|+.|++||... .....+.+|...|.+++|+|+|++|++++.|+. |++||+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~-v~iwd~~ 243 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHESNVNHLSISPNGKYIATGGKDKK-LLIWDIL 243 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEEEEEECCSSCEEEEEECTTSSEEEEEETTCE-EEEEESS
T ss_pred eeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC--ceeEEEcCccccceEEEECCCCCEEEEEcCCCe-EEEEECC
Confidence 788888763 4677799999999999432 234567789999999999999999999999999 9999994
Q ss_pred C-Cceee-----------eeccCCcEEEEEeCCCcEEEEEcccccccc--ccccceeeeccCccccCCceeeEEeecCCC
Q psy3710 301 S-GQKLN-----------ELRRDSSYLCVSSDHGTVHVFSVDEAQKIN--KQSSLASASFLPKYFSSSWSFCKFQIPSDP 366 (424)
Q Consensus 301 ~-~~~~~-----------~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (424)
. ..... .|+|++.+++++ .|+.|++|++.+++... ..... +. ........|...
T Consensus 244 ~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~------~~-----~~~~~~~~~~~~ 311 (343)
T 2xzm_R 244 NLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAE------PI-----TKAEGQKGKNPQ 311 (343)
T ss_dssp CCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCC------SG-----GGBTTBCCSCCC
T ss_pred CCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecC------cc-----hhhhhhcCCCCc
Confidence 3 22222 367888877655 57889999998865433 11100 00 000112245677
Q ss_pred ceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 367 PCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 367 ~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
+..++|+|+|++|++|+.||.|++|++.
T Consensus 312 v~~~~~sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 312 CTSLAWNALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp EEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred eEEEEECCCCCeEEEecCCceEEEEEEE
Confidence 8999999999999999999999999986
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-38 Score=288.27 Aligned_cols=305 Identities=16% Similarity=0.242 Sum_probs=230.0
Q ss_pred cccccCCce-EEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeE
Q psy3710 5 TSSTYKNGL-LYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 5 ~l~~h~~~V-~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 82 (424)
.+.+|.+.| .++.| ++++|++|+.++ |++||+.+++.......|.+.|.+++|++++ .+++++ .|++|
T Consensus 116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s-------~dg~i 185 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGS-------TDRTV 185 (464)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEE-------TTSCE
T ss_pred EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEe-------CCCCE
Confidence 478898885 66555 567999999998 9999999998887778899999999999887 677666 58999
Q ss_pred EEEECCCCcEEEEEe-ecCCeEEEEec--CCceEEEe---eccEEEEeecCCCce-----------------------eE
Q psy3710 83 MIWDDLKKQVVICLE-FNAPVKGVRLR--RDKIVVVL---EGLIKVYTFIQCPQQ-----------------------LH 133 (424)
Q Consensus 83 ~iwd~~~~~~~~~~~-~~~~v~~~~~~--~~~~~~~~---~~~i~v~~~~~~~~~-----------------------~~ 133 (424)
++||+++++.+..+. |...|.+++|+ +++.++++ |+.|++||+. .... ..
T Consensus 186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (464)
T 3v7d_B 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP-KESSVPDHGEEHDYPLVFHTPEENPYFVG 264 (464)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECC-CCCCC------CCSSEEESCGGGCTTEEE
T ss_pred EEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCC-CCcccccccccCCcceEeeccCCCeEEEE
Confidence 999999999999988 89999999998 56666654 8999999996 3322 33
Q ss_pred EEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEE
Q psy3710 134 VFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVF 213 (424)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iw 213 (424)
.+..|. ..+.++ ++++.++++ |+.||.|++||+.++ +.+..+.+|...|.+++|+|+++++++++.|+. |++|
T Consensus 265 ~~~~~~--~~v~~~--~~~~~~l~~-~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~vw 337 (464)
T 3v7d_B 265 VLRGHM--ASVRTV--SGHGNIVVS-GSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIW 337 (464)
T ss_dssp EECCCS--SCEEEE--EEETTEEEE-EETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEE
T ss_pred EccCcc--ceEEEE--cCCCCEEEE-EeCCCeEEEEECCCC-cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEE
Confidence 344444 335444 567888988 999999999999986 677788899999999999999999999999999 9999
Q ss_pred ECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcE
Q psy3710 214 DTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTL 293 (424)
Q Consensus 214 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~ 293 (424)
|+++++++..+. +|...|.+++|+ +++|++++.|+.
T Consensus 338 d~~~~~~~~~~~-----------------------------------------~h~~~v~~~~~~--~~~l~s~s~dg~- 373 (464)
T 3v7d_B 338 DLENGELMYTLQ-----------------------------------------GHTALVGLLRLS--DKFLVSAAADGS- 373 (464)
T ss_dssp ETTTTEEEEEEC-----------------------------------------CCSSCEEEEEEC--SSEEEEEETTSE-
T ss_pred ECCCCcEEEEEe-----------------------------------------CCCCcEEEEEEc--CCEEEEEeCCCc-
Confidence 999888766654 456666666665 356667777776
Q ss_pred EEEEECCCCceeee-----------eccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEee
Q psy3710 294 IRVFDTGSGQKLNE-----------LRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQI 362 (424)
Q Consensus 294 i~iwd~~~~~~~~~-----------~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (424)
|++||+.+++.... ++++++++++++ ||.|++||+.+++.+..... .
T Consensus 374 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~---------------------~ 431 (464)
T 3v7d_B 374 IRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANIL---------------------K 431 (464)
T ss_dssp EEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTT---------------------T
T ss_pred EEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhc---------------------c
Confidence 77777666544332 345666777766 67777777777665432111 1
Q ss_pred cCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 363 PSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 363 ~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
+.+.+..++|+ +...+++++.||.+.+|-++
T Consensus 432 ~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ld 462 (464)
T 3v7d_B 432 DADQIWSVNFK-GKTLVAAVEKDGQSFLEILD 462 (464)
T ss_dssp TCSEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred CCCcEEEEEec-CCEEEEEEEeCCeEEEEEee
Confidence 23456788886 33445555667766666543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-39 Score=286.23 Aligned_cols=321 Identities=13% Similarity=0.098 Sum_probs=240.4
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCc--ccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeE
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLK--EKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 82 (424)
+..|.++|++++|+|++++|++|+.++ |++||+++++ .......|.+.|.+++|+|+++++++++ .|+.|
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-------~dg~i 76 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG-------TDRNA 76 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE-------TTSCE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEc-------CCCeE
Confidence 345999999999999999999998888 9999998886 5555667899999999999999999888 58999
Q ss_pred EEEECCCCcEEEEEe---ecCCeEEEEecCCceEEEe---eccEEEEeecCCCce---eEEEeeCCCCCeeEEEeecCCC
Q psy3710 83 MIWDDLKKQVVICLE---FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQ---LHVFETNPNPKGLCVLCPNSNN 153 (424)
Q Consensus 83 ~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 153 (424)
++||+++++....+. |...|.+++|+|++.++++ ++.|++||+. .... ...+. ..+...+.+++|+|++
T Consensus 77 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~~-~~~~~~i~~~~~~~~~ 154 (372)
T 1k8k_C 77 YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE-QENDWWVCKHIK-KPIRSTVLSLDWHPNS 154 (372)
T ss_dssp EEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE-TTTTEEEEEEEC-TTCCSCEEEEEECTTS
T ss_pred EEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEec-CCCcceeeeeee-cccCCCeeEEEEcCCC
Confidence 999998887665543 7889999999999977765 8999999997 4332 22221 2234568999999999
Q ss_pred CeEEEeeccCCeEEEEeCCC-----------------CCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECC
Q psy3710 154 SLLAFPGRKSGHVHLVDLAD-----------------PERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 216 (424)
Q Consensus 154 ~~l~~~~~~dg~i~i~d~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 216 (424)
+++++ |+.||.|++||++. .......+..|...|.+++|+|++++|++++.|+. |++||++
T Consensus 155 ~~l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~ 232 (372)
T 1k8k_C 155 VLLAA-GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADAD 232 (372)
T ss_dssp SEEEE-EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGG
T ss_pred CEEEE-EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-EEEEECC
Confidence 99998 99999999999642 12455667789999999999999999999999999 9999998
Q ss_pred CcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q psy3710 217 SGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRV 296 (424)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~i 296 (424)
+++.+..+. .|..+|.+++|+|++++|+++ .|+. |++
T Consensus 233 ~~~~~~~~~-----------------------------------------~~~~~v~~~~~~~~~~~l~~~-~d~~-i~i 269 (372)
T 1k8k_C 233 KKMAVATLA-----------------------------------------SETLPLLAVTFITESSLVAAG-HDCF-PVL 269 (372)
T ss_dssp GTTEEEEEE-----------------------------------------CSSCCEEEEEEEETTEEEEEE-TTSS-CEE
T ss_pred CCceeEEEc-----------------------------------------cCCCCeEEEEEecCCCEEEEE-eCCe-EEE
Confidence 877655543 577789999999999988887 8898 999
Q ss_pred EECCC--Cc--eeeeeccCCcEEEEEeCCCcEEEE---EccccccccccccceeeeccCccccCCceeeEEeecCCCceE
Q psy3710 297 FDTGS--GQ--KLNELRRDSSYLCVSSDHGTVHVF---SVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCI 369 (424)
Q Consensus 297 wd~~~--~~--~~~~~~~~~~~l~~~~~d~~i~iw---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (424)
|++.+ ++ .+..+..... ........+++| +... +.... |... ......|.++|+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~----------~~~~-----~~~~~~h~~~v~~ 331 (372)
T 1k8k_C 270 FTYDSAAGKLSFGGRLDVPKQ--SSQRGLTARERFQNLDKKA-SSEGS----------AAAG-----AGLDSLHKNSVSQ 331 (372)
T ss_dssp EEEETTTTEEEECCCCCCC----------CHHHHHHHCCCCC-------------------------CCCSSSSSSCEEE
T ss_pred EEccCcCceEEEeeccCcccc--chhhhcchhhhhhhccccc-ccccC----------cccc-----ccccccccCCcce
Confidence 99987 53 2222222111 112223334444 2111 10000 0000 0001256788999
Q ss_pred EEEe-cCC---CeEEEEeccCcEEEEEecCCcc
Q psy3710 370 CAFG-ADS---NSIIVICADGSYYKFMFNSKGE 398 (424)
Q Consensus 370 ~~~s-~~~---~~l~~~~~dg~v~~~~~~~~~~ 398 (424)
++|. ++| ++|++++.||.|++|++....+
T Consensus 332 ~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 332 ISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp EEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred eEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 9866 676 9999999999999999974333
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=287.70 Aligned_cols=281 Identities=16% Similarity=0.239 Sum_probs=232.5
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCc------ccccccccCCCeeeEEEecc----C---ceEEEEe
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLK------EKERQDFTDGGLGHVEMLFR----C---NYLALVG 70 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~------~~~~~~~~~~~i~~~~~~~~----~---~~l~~~~ 70 (424)
.+.+|.+.|++++|+| ++|++|+.++ |++|++.+.+ .......|...|.+++|+++ + +++++++
T Consensus 11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc
Confidence 4789999999999999 7999998888 9999999887 45555668899999999999 8 8888888
Q ss_pred CCcCCCcCCCeEEEEECCCCcE-----EEEEe-e-----cCCeEEEEec----CCceE-EEe---eccEEEEeecCC---
Q psy3710 71 GGTHPKYPNNRVMIWDDLKKQV-----VICLE-F-----NAPVKGVRLR----RDKIV-VVL---EGLIKVYTFIQC--- 128 (424)
Q Consensus 71 ~~~~~~~~d~~i~iwd~~~~~~-----~~~~~-~-----~~~v~~~~~~----~~~~~-~~~---~~~i~v~~~~~~--- 128 (424)
.|+.|++||+.+++. ...+. + ...|.+++|+ |++.. +++ ++.|++||+. .
T Consensus 89 -------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~ 160 (397)
T 1sq9_A 89 -------FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH-PFAD 160 (397)
T ss_dssp -------TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE-SSSS
T ss_pred -------CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCC-cccc
Confidence 589999999988886 66666 5 4899999999 98876 664 8999999997 4
Q ss_pred ---CceeE-----EEee-----CCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCccccc---c---cCCeE
Q psy3710 129 ---PQQLH-----VFET-----NPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAA---H---EAPLS 189 (424)
Q Consensus 129 ---~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~---~---~~~v~ 189 (424)
.+.+. .+.. ..+...+.+++++|++ .+++ ++.||.|++||++++ +.+..+.. | ...|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~-~~~dg~i~i~d~~~~-~~~~~~~~~~~h~~~~~~i~ 237 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIAT-GFNNGTVQISELSTL-RPLYNFESQHSMINNSNSIR 237 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEE-ECTTSEEEEEETTTT-EEEEEEECCC---CCCCCEE
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEE-EeCCCcEEEEECCCC-ceeEEEeccccccccCCccc
Confidence 44444 5644 3334558889999999 8887 999999999999986 67777777 8 99999
Q ss_pred EEEEccCCCEEEEEecC---CcEEEEEECCCcceeeEEec-------------c---eeeeeecCCCCeEEEEeecCCeE
Q psy3710 190 CIALNQTGTRLATASYK---GTLIRVFDTGSGQKLNELRR-------------G---LCVLCPNSNNSLLAFPGRKSGHV 250 (424)
Q Consensus 190 ~~~~~~~~~~l~~~~~d---~~~i~iwd~~~~~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~dg~i 250 (424)
+++|+|++++|++++.| +. |++||+++++.+..+.. + +..++++|++..++. ++.||.|
T Consensus 238 ~i~~~~~~~~l~~~~~d~~~g~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i 315 (397)
T 1sq9_A 238 SVKFSPQGSLLAIAHDSNSFGC-ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS-AGWDGKL 315 (397)
T ss_dssp EEEECSSTTEEEEEEEETTEEE-EEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE-EETTSEE
T ss_pred eEEECCCCCEEEEEecCCCCce-EEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEE-EeCCCeE
Confidence 99999999999999999 99 99999999998888875 3 678899998886655 8899999
Q ss_pred EEEeCCCCCCCCeeec------cC---------------CCCeEEEEEcCCC----------CEEEEEeCCCcEEEEEEC
Q psy3710 251 HLVDLADPERPPLDIA------AH---------------EAPLSCIALNQTG----------TRLATASYKGTLIRVFDT 299 (424)
Q Consensus 251 ~i~d~~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~----------~~l~~~~~d~~~i~iwd~ 299 (424)
++||+++++ ....+. .| ...|++++|+|++ ++|++++.|+. |++|++
T Consensus 316 ~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~-i~iw~~ 393 (397)
T 1sq9_A 316 RFWDVKTKE-RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRS-IRWFRE 393 (397)
T ss_dssp EEEETTTTE-EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTE-EEEEEE
T ss_pred EEEEcCCCc-eeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCc-EEEEEc
Confidence 999998875 345555 66 9999999999998 67888888887 888887
Q ss_pred CCC
Q psy3710 300 GSG 302 (424)
Q Consensus 300 ~~~ 302 (424)
++|
T Consensus 394 ~~g 396 (397)
T 1sq9_A 394 AGG 396 (397)
T ss_dssp EC-
T ss_pred CCC
Confidence 665
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=276.59 Aligned_cols=279 Identities=11% Similarity=0.089 Sum_probs=207.1
Q ss_pred ccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCC--cEEEEE--e-ecCCeEEEEecCCceEEEe-
Q psy3710 43 EKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKK--QVVICL--E-FNAPVKGVRLRRDKIVVVL- 116 (424)
Q Consensus 43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~--~~~~~~--~-~~~~v~~~~~~~~~~~~~~- 116 (424)
.......|.+.|.+++|+++ ++++++ .|++|++||+.++ +....+ . |...|.+++|+|++.++++
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~las~~-------~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~ 76 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--ILATGS-------TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAG 76 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--EEEEEE-------SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEE
T ss_pred cceeeccCCCceeeeccCCC--EEEEEc-------CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEE
Confidence 34445678999999999877 777777 5899999999875 344555 2 7889999999999987776
Q ss_pred --eccEEEEeecC------CCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCC---CCCccccccc
Q psy3710 117 --EGLIKVYTFIQ------CPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE---RPPLDIAAHE 185 (424)
Q Consensus 117 --~~~i~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~---~~~~~~~~~~ 185 (424)
|+.|++|++.. ..+.+..+..|.. .+.+++|+|++++|++ |+.|+.|++||++... +.+..+.+|.
T Consensus 77 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~--~V~~v~~sp~g~~las-~s~D~~v~iwd~~~~~~~~~~~~~~~~h~ 153 (330)
T 2hes_X 77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHEN--EVKGVAWSNDGYYLAT-CSRDKSVWIWETDESGEEYECISVLQEHS 153 (330)
T ss_dssp ETTSCEEEEEC-------CCCEEEEEEC------CEEEEEECTTSCEEEE-EETTSCEEEEECCTTCCCCEEEEEECCCS
T ss_pred eCCCcEEEEEcccCcCccccceeEEEEcCCCC--cEEEEEECCCCCEEEE-EeCCCEEEEEeccCCCCCeEEEEEeccCC
Confidence 89999999842 1244556677764 4889999999999998 9999999999995432 2345678999
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeee
Q psy3710 186 APLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDI 265 (424)
Q Consensus 186 ~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~ 265 (424)
..|.+++|+|++++|++++.|+. |++||..++... ....+
T Consensus 154 ~~v~~v~~~p~~~~l~s~s~D~~-i~iW~~~~~~~~---------------------------------------~~~~~ 193 (330)
T 2hes_X 154 QDVKHVIWHPSEALLASSSYDDT-VRIWKDYDDDWE---------------------------------------CVAVL 193 (330)
T ss_dssp SCEEEEEECSSSSEEEEEETTSC-EEEEEEETTEEE---------------------------------------EEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCe-EEEEECCCCCee---------------------------------------EEEEc
Confidence 99999999999999999999999 999997654210 01223
Q ss_pred ccCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEECCCC--------ceeee-------------eccCCcEEEEEeCCC
Q psy3710 266 AAHEAPLSCIALNQT--GTRLATASYKGTLIRVFDTGSG--------QKLNE-------------LRRDSSYLCVSSDHG 322 (424)
Q Consensus 266 ~~~~~~v~~~~~~~~--~~~l~~~~~d~~~i~iwd~~~~--------~~~~~-------------~~~~~~~l~~~~~d~ 322 (424)
.+|...|.+++|+|+ +.+|++++.|++ |++||+.++ .+... |++ +.+|++++.||
T Consensus 194 ~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~l~s~~~dg 271 (330)
T 2hes_X 194 NGHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF-NGLIASVGADG 271 (330)
T ss_dssp CCCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT-TSCEEEEETTS
T ss_pred cCCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCCCccccceeEEeeecccccccceEEEEEcC-CCEEEEEeCCC
Confidence 378888999999998 678899999999 999988653 22222 233 44899999999
Q ss_pred cEEEEEccccccccccccceeeeccCccccCCceeeEEeecCC-CceEEEEec--CCCeEEEEeccCcEEEEEec
Q psy3710 323 TVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSD-PPCICAFGA--DSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 323 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~--~~~~l~~~~~dg~v~~~~~~ 394 (424)
.|++|+..+++.... ......|.. .+..++|+| ++++|++|+.||+|++|++.
T Consensus 272 ~v~iw~~~~~~~~~~-------------------~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 272 VLAVYEEVDGEWKVF-------------------AKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp CEEEEEEETTEEEEE-------------------EEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred EEEEEEcCCCceEEE-------------------eccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 999999876531000 000112444 688999999 78999999999999999986
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=283.18 Aligned_cols=277 Identities=14% Similarity=0.141 Sum_probs=225.7
Q ss_pred cccccCCceEEEEECCCC-CeeEeecCCe-EEEEeCCcCccccccc--ccCCCeeeEEEec-cCceEEEEeCCcCCCcCC
Q psy3710 5 TSSTYKNGLLYAGFNQDQ-GCFACGMEDG-FRIYNCDPLKEKERQD--FTDGGLGHVEMLF-RCNYLALVGGGTHPKYPN 79 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g-~~la~g~~~~-i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~~~~~~~~~~d 79 (424)
.+.+|.+.|++++|+|++ ++|++|+.++ |+|||+.+.+...... .|.+.|.+++|+| +++.+++++ .|
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-------~d 140 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS-------IR 140 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE-------TT
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe-------CC
Confidence 467999999999999999 9999999888 9999999877755444 4889999999999 678888887 58
Q ss_pred CeEEEEECCCCcEEEEEe-e---cCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCC
Q psy3710 80 NRVMIWDDLKKQVVICLE-F---NAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSN 152 (424)
Q Consensus 80 ~~i~iwd~~~~~~~~~~~-~---~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (424)
+.|++||+.+ ..+..+. + ...|.+++|+|++..+++ |+.|++||+ .++.+..+..|.. .+.+++|+|+
T Consensus 141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~h~~--~v~~~~~~~~ 215 (383)
T 3ei3_B 141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL--DGHEIFKEKLHKA--KVTHAEFNPR 215 (383)
T ss_dssp TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET--TSCEEEEEECSSS--CEEEEEECSS
T ss_pred CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC--CCCEEEEeccCCC--cEEEEEECCC
Confidence 9999999985 5555554 3 377999999999987776 899999998 4667778887764 4889999999
Q ss_pred CC-eEEEeeccCCeEEEEeCCCCCC--CCcccccccCCeEEEEEcc-CCCEEEEEecCCcEEEEEECCCcceeeEEecc-
Q psy3710 153 NS-LLAFPGRKSGHVHLVDLADPER--PPLDIAAHEAPLSCIALNQ-TGTRLATASYKGTLIRVFDTGSGQKLNELRRG- 227 (424)
Q Consensus 153 ~~-~l~~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~- 227 (424)
++ ++++ |+.|+.|++||+++... ......+|...|.+++|+| ++++|++++.|+. |++||+++++....+..+
T Consensus 216 ~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 216 CDWLMAT-SSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNE-IRVYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp CTTEEEE-EETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSE-EEEEETTBTTSCSEEEECC
T ss_pred CCCEEEE-EeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCc-EEEEECCCCcccccccccc
Confidence 99 6776 99999999999987421 1222337999999999999 9999999999999 999999998876666532
Q ss_pred -------------------eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeecc--CCCCeEEEEEcCCCCEEEE
Q psy3710 228 -------------------LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAA--HEAPLSCIALNQTGTRLAT 286 (424)
Q Consensus 228 -------------------~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~ 286 (424)
...++++|++.. +++.|+.|++||+.+++. ...+.+ |...+..++|+|++++|++
T Consensus 294 ~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~---s~s~d~~i~iwd~~~~~~-~~~l~~~~~~~~~~~~~~s~~g~~l~s 369 (383)
T 3ei3_B 294 HRQFQHLTPIKATWHPMYDLIVAGRYPDDQL---LLNDKRTIDIYDANSGGL-VHQLRDPNAAGIISLNKFSPTGDVLAS 369 (383)
T ss_dssp BCCCTTSCCCCCEECSSSSEEEEECBCCTTT---CTTCCCCEEEEETTTCCE-EEEECBTTBCSCCCEEEECTTSSEEEE
T ss_pred ccccccccceEEeccCCCCceEEEecCCccc---ccCCCCeEEEEecCCCce-eeeecCCCCCceEEEEEEecCccEEEE
Confidence 122445555555 577999999999998764 445544 5677888899999999999
Q ss_pred EeCCCcEEEEEECCC
Q psy3710 287 ASYKGTLIRVFDTGS 301 (424)
Q Consensus 287 ~~~d~~~i~iwd~~~ 301 (424)
++ |+. |++||+++
T Consensus 370 ~s-d~~-i~iw~~~~ 382 (383)
T 3ei3_B 370 GM-GFN-ILIWNRED 382 (383)
T ss_dssp EE-TTE-EEEEECC-
T ss_pred ec-CCc-EEEEecCC
Confidence 97 899 99999874
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-39 Score=284.81 Aligned_cols=287 Identities=15% Similarity=0.183 Sum_probs=231.9
Q ss_pred ccccCCceEEEEECCCCCee-EeecC---Ce-EEEEeCCcCcccccc-cccCCCeeeEEEecc---CceEEEEeCCcCCC
Q psy3710 6 SSTYKNGLLYAGFNQDQGCF-ACGME---DG-FRIYNCDPLKEKERQ-DFTDGGLGHVEMLFR---CNYLALVGGGTHPK 76 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~l-a~g~~---~~-i~iw~~~~~~~~~~~-~~~~~~i~~~~~~~~---~~~l~~~~~~~~~~ 76 (424)
+.+|.+.|++++|+|++..+ ++|+. ++ |++|++.+++..... ..|...|.+++|+|+ ++.+++++
T Consensus 14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~------ 87 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGD------ 87 (357)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEE------
T ss_pred ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEec------
Confidence 56799999999999999655 46665 66 999999988764333 357889999999999 68888887
Q ss_pred cCCCeEEEEECCCCc-EEEEEe-ecCCeEEEEe------cCCceEEEe---eccEEEEeecCCCceeEEEeeCCC--CCe
Q psy3710 77 YPNNRVMIWDDLKKQ-VVICLE-FNAPVKGVRL------RRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPN--PKG 143 (424)
Q Consensus 77 ~~d~~i~iwd~~~~~-~~~~~~-~~~~v~~~~~------~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~--~~~ 143 (424)
.|+.|++||+.+++ .+..+. |...|.++.| +|++..+++ |+.|++||+......+..+..+.. ...
T Consensus 88 -~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (357)
T 3i2n_A 88 -FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRD 166 (357)
T ss_dssp -TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCC
T ss_pred -CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCc
Confidence 58999999999888 777777 8899999954 678766665 899999999744346777765543 234
Q ss_pred eEEEe----ecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEcc---CCCEEEEEecCCcEEEEEECC
Q psy3710 144 LCVLC----PNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ---TGTRLATASYKGTLIRVFDTG 216 (424)
Q Consensus 144 ~~~~~----~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~~i~iwd~~ 216 (424)
+.++. ++|+++++++ ++.||.|++||++++ + ......|...|.+++|+| +++++++++.|+. |++||++
T Consensus 167 v~~~~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~-~-~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~ 242 (357)
T 3i2n_A 167 CWTVAFGNAYNQEERVVCA-GYDNGDIKLFDLRNM-A-LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK-FHVFDMR 242 (357)
T ss_dssp EEEEEEECCCC-CCCEEEE-EETTSEEEEEETTTT-E-EEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE-EEEEEEE
T ss_pred eEEEEEEeccCCCCCEEEE-EccCCeEEEEECccC-c-eeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe-EEEEeCc
Confidence 66666 7899999998 999999999999985 3 345567899999999999 9999999999999 9999998
Q ss_pred CcceeeEEe-----c---ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCC------------------CeeeccCCC
Q psy3710 217 SGQKLNELR-----R---GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERP------------------PLDIAAHEA 270 (424)
Q Consensus 217 ~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~------------------~~~~~~~~~ 270 (424)
+++....+. . .+..++++|++..++++++.||.|++||++.+... ...+..|..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 322 (357)
T 3i2n_A 243 TQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ 322 (357)
T ss_dssp EEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS
T ss_pred CCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC
Confidence 876655443 3 37788999999978888999999999999875432 345678999
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCcEEEEEECCCCce
Q psy3710 271 PLSCIALNQTGTRLA-TASYKGTLIRVFDTGSGQK 304 (424)
Q Consensus 271 ~v~~~~~~~~~~~l~-~~~~d~~~i~iwd~~~~~~ 304 (424)
.|++++|+|++++|+ +++.|+. |++||+.+.+.
T Consensus 323 ~v~~~~~s~~~~~l~~s~~~d~~-i~iw~~~~~~~ 356 (357)
T 3i2n_A 323 PISSLDWSPDKRGLCVCSSFDQT-VRVLIVTKLNK 356 (357)
T ss_dssp CEEEEEECSSSTTEEEEEETTSE-EEEEEECC---
T ss_pred CeeEEEEcCCCCeEEEEecCCCc-EEEEECCCccc
Confidence 999999999999998 8999999 99999987654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-39 Score=292.96 Aligned_cols=331 Identities=12% Similarity=0.140 Sum_probs=245.3
Q ss_pred cccCCceEEEEECC-CCCeeEeecCCe-EEEEeCCc---Cccc-cccc-ccCCCeeeEEEeccCceEEEEeCCcCCCcCC
Q psy3710 7 STYKNGLLYAGFNQ-DQGCFACGMEDG-FRIYNCDP---LKEK-ERQD-FTDGGLGHVEMLFRCNYLALVGGGTHPKYPN 79 (424)
Q Consensus 7 ~~h~~~V~~~~~s~-~g~~la~g~~~~-i~iw~~~~---~~~~-~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d 79 (424)
.+|.+.|++++|+| ++++||+|+.++ |+|||+.+ +... .... .|.+.|.+++|+++++.+++++ .|
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-------~d 132 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSS-------KD 132 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEE-------TT
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEe-------CC
Confidence 78999999999999 999999999998 99999876 3321 1222 3789999999999999999988 68
Q ss_pred CeEEEEECC---CCcEEEEEe-------------ecCCeEEEE--ecCCceEEEe---eccEEEEeecCCCceeEEEeeC
Q psy3710 80 NRVMIWDDL---KKQVVICLE-------------FNAPVKGVR--LRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETN 138 (424)
Q Consensus 80 ~~i~iwd~~---~~~~~~~~~-------------~~~~v~~~~--~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~ 138 (424)
+.|++||+. +++...... +...+.++. +++++.++++ |+.|++||++ ..+.+..+..+
T Consensus 133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~ 211 (437)
T 3gre_A 133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR-TLERLQIIENS 211 (437)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETT-TCCEEEEEECC
T ss_pred CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCeeeEEEccC
Confidence 999999984 565554443 223455555 4467766665 8999999997 78888888873
Q ss_pred CCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccc-cccCCeEEEEEc----cCCCEEEEEecCCcEEEEE
Q psy3710 139 PNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA-AHEAPLSCIALN----QTGTRLATASYKGTLIRVF 213 (424)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~----~~~~~l~~~~~d~~~i~iw 213 (424)
.+...+.+++|+|++++|++ |+.||.|++||++++ ..+..+. .|..+|.+++|+ |++.+|++++.|+. |++|
T Consensus 212 ~h~~~v~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-i~iw 288 (437)
T 3gre_A 212 PRHGAVSSICIDEECCVLIL-GTTRGIIDIWDIRFN-VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF-LTIW 288 (437)
T ss_dssp GGGCCEEEEEECTTSCEEEE-EETTSCEEEEETTTT-EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE-EEEE
T ss_pred CCCCceEEEEECCCCCEEEE-EcCCCeEEEEEcCCc-cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc-EEEE
Confidence 23345899999999999998 999999999999985 5556554 788899999665 46789999999999 9999
Q ss_pred ECCCcceeeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeecc--CCCCeEEEEEcCCCCEEEEEe
Q psy3710 214 DTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAA--HEAPLSCIALNQTGTRLATAS 288 (424)
Q Consensus 214 d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~ 288 (424)
|+++++.+..+..+ +....++|.+..+. + ..+.+ |...|++++|+ ++++|++++
T Consensus 289 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~---------------~~~~~~~~~~~v~~l~~~-~~~~l~s~~ 347 (437)
T 3gre_A 289 NFVKGHCQYAFINSDEQPSMEHFLPIEKGLE-----E---------------LNFCGIRSLNALSTISVS-NDKILLTDE 347 (437)
T ss_dssp ETTTTEEEEEEESSSSCCCGGGGSCBCSSGG-----G---------------CCCCCCCSGGGGCCEEEE-TTEEEEEEG
T ss_pred EcCCCcEEEEEEcCCCCCccceecccccccc-----c---------------ceecccccCCceEEEEEC-CceEEEecC
Confidence 99999999888765 44455666654431 0 01223 88999999999 779999999
Q ss_pred CCCcEEEEEECCCCceeeeeccCC---cEEEEEe--CCCcEEEEE--ccccccccccccceeeeccCccccCCceeeEEe
Q psy3710 289 YKGTLIRVFDTGSGQKLNELRRDS---SYLCVSS--DHGTVHVFS--VDEAQKINKQSSLASASFLPKYFSSSWSFCKFQ 361 (424)
Q Consensus 289 ~d~~~i~iwd~~~~~~~~~~~~~~---~~l~~~~--~d~~i~iw~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (424)
.|+. |++||+.+++.+..+.... ..+.... .+..+.+-. ..... ......
T Consensus 348 ~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~ 404 (437)
T 3gre_A 348 ATSS-IVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTH----------------------SVDDSL 404 (437)
T ss_dssp GGTE-EEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC---------------------------------
T ss_pred CCCe-EEEEECCCcccceEEecccccCceEEEEEeecceEEEEEeccccccc----------------------ccCccc
Confidence 9999 9999999999988876531 1111111 111111111 00000 011234
Q ss_pred ecCCCceEEEEecC--CCeEEEEeccCcEEEEE
Q psy3710 362 IPSDPPCICAFGAD--SNSIIVICADGSYYKFM 392 (424)
Q Consensus 362 ~~~~~~~~~~~s~~--~~~l~~~~~dg~v~~~~ 392 (424)
.|...|..++|+++ +.+|++|+.||.|++|+
T Consensus 405 ~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 405 YHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 57788999999998 77999999999999995
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=283.44 Aligned_cols=276 Identities=15% Similarity=0.160 Sum_probs=238.5
Q ss_pred ccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEE
Q psy3710 8 TYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWD 86 (424)
Q Consensus 8 ~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd 86 (424)
+|.+.|++++|+|++++|++|+.++ |++|+ .+++.......|...+.+++|+|+++++++++ .|+.|++||
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~d~~i~iwd 177 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMD-------VENVTILWN 177 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEE-------TTCCEEEEE
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEe-------cCCeEEEEE
Confidence 4788999999999999999999888 99999 55566666667899999999999999999888 589999999
Q ss_pred CCCCcEEEEEe-ecCC---------------eEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEe
Q psy3710 87 DLKKQVVICLE-FNAP---------------VKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLC 148 (424)
Q Consensus 87 ~~~~~~~~~~~-~~~~---------------v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (424)
+.+++.+..+. +... +.++.|++++.+++. ++.|++||+. ..+.+..+..+.. .+.+++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~-~~~~~~~~~~~~~--~i~~~~ 254 (425)
T 1r5m_A 178 VISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQIT-EKTPTGKLIGHHG--PISVLE 254 (425)
T ss_dssp TTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETT-CSSCSEEECCCSS--CEEEEE
T ss_pred CCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcC-CCceeeeeccCCC--ceEEEE
Confidence 99999988887 4444 899999999887766 8999999997 6677777776664 488999
Q ss_pred ecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc-
Q psy3710 149 PNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG- 227 (424)
Q Consensus 149 ~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~- 227 (424)
++|++++|++ ++.||.|++||++++ +....+..|...|.+++|+|++ .+++++.|+. |++||+++++.+..+..+
T Consensus 255 ~~~~~~~l~~-~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~ 330 (425)
T 1r5m_A 255 FNDTNKLLLS-ASDDGTLRIWHGGNG-NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGS-VRLWSLKQNTLLALSIVDG 330 (425)
T ss_dssp EETTTTEEEE-EETTSCEEEECSSSB-SCSEEECCCSSCEEEEEEETTT-EEEEEETTSE-EEEEETTTTEEEEEEECTT
T ss_pred ECCCCCEEEE-EcCCCEEEEEECCCC-ccceEecCCCccEEEEEECCCC-EEEEEeCCCc-EEEEECCCCcEeEecccCC
Confidence 9999999998 999999999999986 6778888999999999999999 9999999999 999999999988888753
Q ss_pred --eeeeeecCCCCeEEEEeecCCeEEEEeCCCCC-------------------CCCeeeccCCC--CeEEEEEcCCCCEE
Q psy3710 228 --LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE-------------------RPPLDIAAHEA--PLSCIALNQTGTRL 284 (424)
Q Consensus 228 --~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~-------------------~~~~~~~~~~~--~v~~~~~~~~~~~l 284 (424)
+..++++|++..+++ ++.||.|++||+.+.. .....+..|.. .|++++|+|++++|
T Consensus 331 ~~i~~~~~s~~~~~l~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 409 (425)
T 1r5m_A 331 VPIFAGRISQDGQKYAV-AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKI 409 (425)
T ss_dssp CCEEEEEECTTSSEEEE-EETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEE
T ss_pred ccEEEEEEcCCCCEEEE-EECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceE
Confidence 778899999887665 8899999999998755 13556677866 99999999999999
Q ss_pred EEEeCCCcEEEEEECC
Q psy3710 285 ATASYKGTLIRVFDTG 300 (424)
Q Consensus 285 ~~~~~d~~~i~iwd~~ 300 (424)
++++.||. |++||++
T Consensus 410 ~~~~~dg~-i~iw~~~ 424 (425)
T 1r5m_A 410 SVAYSLQE-GSVVAIP 424 (425)
T ss_dssp EEEESSSC-CEEEECC
T ss_pred EEEecCce-EEEEeec
Confidence 99999999 9999986
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=279.56 Aligned_cols=277 Identities=14% Similarity=0.225 Sum_probs=217.2
Q ss_pred ccccccCCCeeeEEEeccC-ceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe---ecCCeEEEEecC-CceEEEe---
Q psy3710 45 ERQDFTDGGLGHVEMLFRC-NYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE---FNAPVKGVRLRR-DKIVVVL--- 116 (424)
Q Consensus 45 ~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~-~~~~~~~--- 116 (424)
.....|.+.|.+++|+|++ +++++++ .|+.|++||+.+++....+. |...|.+++|+| ++..+++
T Consensus 67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 139 (383)
T 3ei3_B 67 RTASPFDRRVTSLEWHPTHPTTVAVGS-------KGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI 139 (383)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEE-------BTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET
T ss_pred EeccCCCCCEEEEEECCCCCCEEEEEc-------CCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC
Confidence 3345678999999999999 8888887 58999999999888887765 789999999999 5566654
Q ss_pred eccEEEEeecCCCceeEEEeeCC-CCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEcc
Q psy3710 117 EGLIKVYTFIQCPQQLHVFETNP-NPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ 195 (424)
Q Consensus 117 ~~~i~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 195 (424)
|+.|++||+. . ..+..+..+. ....+.+++++|+++++++ |+.|+.|++||++. .....+.+|...|.+++|+|
T Consensus 140 d~~i~iwd~~-~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~--~~~~~~~~h~~~v~~~~~~~ 214 (383)
T 3ei3_B 140 RGATTLRDFS-G-SVIQVFAKTDSWDYWYCCVDVSVSRQMLAT-GDSTGRLLLLGLDG--HEIFKEKLHKAKVTHAEFNP 214 (383)
T ss_dssp TTEEEEEETT-S-CEEEEEECCCCSSCCEEEEEEETTTTEEEE-EETTSEEEEEETTS--CEEEEEECSSSCEEEEEECS
T ss_pred CCEEEEEECC-C-CceEEEeccCCCCCCeEEEEECCCCCEEEE-ECCCCCEEEEECCC--CEEEEeccCCCcEEEEEECC
Confidence 8999999996 3 4555554433 2345889999999999998 99999999999953 67788889999999999999
Q ss_pred CCC-EEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEE
Q psy3710 196 TGT-RLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSC 274 (424)
Q Consensus 196 ~~~-~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 274 (424)
+++ ++++++.|+. |++||+++.+.... ....+ +|...|.+
T Consensus 215 ~~~~~l~s~~~d~~-i~iwd~~~~~~~~~-------------------------------------~~~~~-~~~~~v~~ 255 (383)
T 3ei3_B 215 RCDWLMATSSVDAT-VKLWDLRNIKDKNS-------------------------------------YIAEM-PHEKPVNA 255 (383)
T ss_dssp SCTTEEEEEETTSE-EEEEEGGGCCSTTC-------------------------------------EEEEE-ECSSCEEE
T ss_pred CCCCEEEEEeCCCE-EEEEeCCCCCcccc-------------------------------------eEEEe-cCCCceEE
Confidence 998 8999999999 99999987431100 01111 57788889
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEEECCCCceeeee------------------ccCCcEEE---------EEeCCCcEEE
Q psy3710 275 IALNQ-TGTRLATASYKGTLIRVFDTGSGQKLNEL------------------RRDSSYLC---------VSSDHGTVHV 326 (424)
Q Consensus 275 ~~~~~-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~------------------~~~~~~l~---------~~~~d~~i~i 326 (424)
++|+| ++++|++++.|+. |++||+++++.+..+ .|++..++ +++.|+.|++
T Consensus 256 ~~~s~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~i 334 (383)
T 3ei3_B 256 AYFNPTDSTKLLTTDQRNE-IRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDI 334 (383)
T ss_dssp EEECTTTSCEEEEEESSSE-EEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEE
T ss_pred EEEcCCCCCEEEEEcCCCc-EEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEE
Confidence 99999 8889999998888 999998876654332 22333333 5568999999
Q ss_pred EEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 327 FSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 327 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
||+.+++.+...... .+.+.+..++|+|++++|++++ ||.|++|+++
T Consensus 335 wd~~~~~~~~~l~~~--------------------~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 335 YDANSGGLVHQLRDP--------------------NAAGIISLNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp EETTTCCEEEEECBT--------------------TBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred EecCCCceeeeecCC--------------------CCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence 999998765442211 0235566779999999999997 9999999986
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=269.09 Aligned_cols=293 Identities=12% Similarity=0.120 Sum_probs=212.5
Q ss_pred ccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEE
Q psy3710 47 QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKV 122 (424)
Q Consensus 47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v 122 (424)
...|.+.|.+++|+|+++++++++ .|+.|++||+.+++.+..+. |...|.+++|+|++.++++ |+.|++
T Consensus 28 l~~h~~~v~~~~~s~~~~~l~~~~-------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLLFSCS-------KDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEE-------SSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred EEEeeceEEEEEEcCCCCEEEEEe-------CCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 456899999999999999999988 58999999999999999998 8999999999999977765 899999
Q ss_pred EeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccC-----CeEEEEeCCCCCC----------CCcccccccC-
Q psy3710 123 YTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKS-----GHVHLVDLADPER----------PPLDIAAHEA- 186 (424)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d-----g~i~i~d~~~~~~----------~~~~~~~~~~- 186 (424)
||+. +++.+..+. +. ..+.+++|+|+++++++ ++.+ |.|++||+..... ....+..|..
T Consensus 101 wd~~-~~~~~~~~~-~~--~~v~~~~~~~~~~~l~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 101 WDVS-NGQCVATWK-SP--VPVKRVEFSPCGNYFLA-ILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175 (369)
T ss_dssp EETT-TCCEEEEEE-CS--SCEEEEEECTTSSEEEE-EECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred EECC-CCcEEEEee-cC--CCeEEEEEccCCCEEEE-ecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence 9996 677777776 33 45889999999999998 8888 9999999987532 3334455665
Q ss_pred -CeEEEEEccCCCEEEEEecCCcEEEEEECCC-cceeeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCC
Q psy3710 187 -PLSCIALNQTGTRLATASYKGTLIRVFDTGS-GQKLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERP 261 (424)
Q Consensus 187 -~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~ 261 (424)
.+.+++|+|++++|++++.|+. |++||+++ .+.+..+..+ +..++++|++..+++ ++.|+.|++||+++.+.
T Consensus 176 ~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~v~d~~~~~~- 252 (369)
T 3zwl_B 176 DAATVAGWSTKGKYIIAGHKDGK-ISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFIT-SSRDTNSFLVDVSTLQV- 252 (369)
T ss_dssp CCEEEEEECGGGCEEEEEETTSE-EEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEE-EETTSEEEEEETTTCCE-
T ss_pred cceeEEEEcCCCCEEEEEcCCCE-EEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEE-ecCCceEEEEECCCCce-
Confidence 8999999999999999999999 99999988 5655555422 444555554444333 45555555555544321
Q ss_pred Ceeecc-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeeccCCcEEEEEeCCCcEEEEEcccccccccccc
Q psy3710 262 PLDIAA-HEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSS 340 (424)
Q Consensus 262 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 340 (424)
...- +...+.+++|+|+++++++++.++. ..+|..... .....+++||+.+++.+.
T Consensus 253 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~----------------~~~~~i~~~d~~~~~~~~---- 309 (369)
T 3zwl_B 253 --LKKYETDCPLNTAVITPLKEFIILGGGQEA-KDVTTTSAN----------------EGKFEARFYHKIFEEEIG---- 309 (369)
T ss_dssp --EEEEECSSCEEEEEECSSSSEEEEEECCC------------------------------CEEEEEETTTCCEEE----
T ss_pred --eeeecCCCCceeEEecCCCceEEEeecCCC-ceEEEEecC----------------CCcceeEEEecCCCcchh----
Confidence 0001 2334555555555555555555554 443332211 112278999998876543
Q ss_pred ceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecC
Q psy3710 341 LASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~ 395 (424)
.+..|.+.+..++|+|++++|++++.||.|++|++..
T Consensus 310 ------------------~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 310 ------------------RVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp ------------------EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred ------------------heecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 2455678899999999999999999999999999973
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=276.77 Aligned_cols=279 Identities=14% Similarity=0.193 Sum_probs=224.7
Q ss_pred ccccCCceEEEEECCC---C-C-eeEeecCCeEEEEeCCcCcccccccc-----cCCCeeeEEEecc----CceEEEEeC
Q psy3710 6 SSTYKNGLLYAGFNQD---Q-G-CFACGMEDGFRIYNCDPLKEKERQDF-----TDGGLGHVEMLFR----CNYLALVGG 71 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~---g-~-~la~g~~~~i~iw~~~~~~~~~~~~~-----~~~~i~~~~~~~~----~~~l~~~~~ 71 (424)
+.+|.++|++++|+|+ + . ++++++++.|++|++.+++....... |.+.+.+++|+|+ +.++++++
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~- 92 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG- 92 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE-
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec-
Confidence 4589999999999984 3 3 55556666699999987766433322 5678999999999 55777777
Q ss_pred CcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecC-CceEEEe---eccEEEEeecCCCceeEEE---eeCCCCCe
Q psy3710 72 GTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRR-DKIVVVL---EGLIKVYTFIQCPQQLHVF---ETNPNPKG 143 (424)
Q Consensus 72 ~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~---~~~i~v~~~~~~~~~~~~~---~~~~~~~~ 143 (424)
.|+.|++||+.+++.+..+. |...|.+++|+| ++.++++ |+.|++||++ .++.+..+ ..+. ..
T Consensus 93 ------~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~--~~ 163 (366)
T 3k26_A 93 ------SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ-TDTLVAIFGGVEGHR--DE 163 (366)
T ss_dssp ------TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT-TTEEEEEECSTTSCS--SC
T ss_pred ------CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee-cCeEEEEeccccccc--Cc
Confidence 58999999999999999998 899999999999 7766665 8999999996 66777766 3444 55
Q ss_pred eEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccc----------------------------cccCCeEEEEEcc
Q psy3710 144 LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA----------------------------AHEAPLSCIALNQ 195 (424)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~----------------------------~~~~~v~~~~~~~ 195 (424)
+.+++|+|+++++++ ++.||.|++||++++ +....+. .|...|.+++|+
T Consensus 164 v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 240 (366)
T 3k26_A 164 VLSADYDLLGEKIMS-CGMDHSLKLWRINSK-RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL- 240 (366)
T ss_dssp EEEEEECTTSSEEEE-EETTSCEEEEESCSH-HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-
T ss_pred eeEEEECCCCCEEEE-ecCCCCEEEEECCCC-ccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-
Confidence 899999999999998 999999999999875 3333333 299999999999
Q ss_pred CCCEEEEEecCCcEEEEEECCCcce--------------eeEEecc---eeeeeecCC--CCeEEEEeecCCeEEEEeCC
Q psy3710 196 TGTRLATASYKGTLIRVFDTGSGQK--------------LNELRRG---LCVLCPNSN--NSLLAFPGRKSGHVHLVDLA 256 (424)
Q Consensus 196 ~~~~l~~~~~d~~~i~iwd~~~~~~--------------~~~~~~~---~~~~~~~~~--~~~~~~~~~~dg~i~i~d~~ 256 (424)
++++++++.|+. |++||+++++. +..+..+ +..++++|+ +..++ +|+.||.|++||+.
T Consensus 241 -~~~l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~-~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 241 -GDLILSKSCENA-IVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA-LGNQVGKLYVWDLE 317 (366)
T ss_dssp -TTEEEEECSSSE-EEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE-EECTTSCEEEEECC
T ss_pred -CCEEEEEecCCE-EEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE-EEecCCcEEEEECC
Confidence 679999999999 99999987644 4455443 667888888 65555 58999999999999
Q ss_pred CCCCC---CeeeccC--CCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCC
Q psy3710 257 DPERP---PLDIAAH--EAPLSCIALNQTGTRLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 257 ~~~~~---~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~ 301 (424)
+++.. ...+..| ...|++++|+|++++|++++.||. |++||+.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-i~iwd~~~ 366 (366)
T 3k26_A 318 VEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDAS-IWRWDRLR 366 (366)
T ss_dssp SSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE-EEEEEC--
T ss_pred CCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCE-EEEEEecC
Confidence 87632 2355566 799999999999999999999999 99999863
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=278.97 Aligned_cols=287 Identities=16% Similarity=0.199 Sum_probs=232.3
Q ss_pred cccCCc--eEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccc-cCCCeeeEEEeccCceEEEEeCCcCCCcCCCeE
Q psy3710 7 STYKNG--LLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDF-TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 7 ~~h~~~--V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 82 (424)
.+|.+. +.++.|++ ..+++++.++ |++|++.+++....... |.+.|.+++|+|+++++++++ .|+.|
T Consensus 88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-------~dg~i 158 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGL-------GNGLV 158 (401)
T ss_dssp TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEE-------TTSCE
T ss_pred CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEEC-------CCCeE
Confidence 355554 44466665 3455555555 99999998887555444 788999999999999999888 58999
Q ss_pred EEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe-eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEee
Q psy3710 83 MIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPG 160 (424)
Q Consensus 83 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (424)
++||+.+++.+..+. |...|.+++|+++..+.++ |+.|++||++........+..|.. .+.+++|+|+++++++ |
T Consensus 159 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s-~ 235 (401)
T 4aez_A 159 DIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS--EVCGLAWRSDGLQLAS-G 235 (401)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS--CEEEEEECTTSSEEEE-E
T ss_pred EEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCC--CeeEEEEcCCCCEEEE-E
Confidence 999999999999887 8999999999776554444 899999999755667777777764 4889999999999998 9
Q ss_pred ccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCC-EEEEEe--cCCcEEEEEECCCcceeeEEecc--eeeeeecC
Q psy3710 161 RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT-RLATAS--YKGTLIRVFDTGSGQKLNELRRG--LCVLCPNS 235 (424)
Q Consensus 161 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~d~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~ 235 (424)
+.||.|++||++++ .....+..|...|.+++|+|++. .+++++ .|+. |++||+++++.+..+..+ +..++++|
T Consensus 236 ~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~-i~i~d~~~~~~~~~~~~~~~v~~~~~s~ 313 (401)
T 4aez_A 236 GNDNVVQIWDARSS-IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ-IHFWNAATGARVNTVDAGSQVTSLIWSP 313 (401)
T ss_dssp ETTSCEEEEETTCS-SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE-EEEEETTTCCEEEEEECSSCEEEEEECS
T ss_pred eCCCeEEEccCCCC-CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE-EEEEECCCCCEEEEEeCCCcEEEEEECC
Confidence 99999999999986 66777889999999999999775 555554 6999 999999999988888654 78899999
Q ss_pred CCCeEEEE-eecCCeEEEEeCCCCCCC-CeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeee
Q psy3710 236 NNSLLAFP-GRKSGHVHLVDLADPERP-PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNEL 308 (424)
Q Consensus 236 ~~~~~~~~-~~~dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~ 308 (424)
++..++++ |+.||.|++||+.++... ...+.+|...|.+++|+|++++|++++.||. |++|++.+++.+...
T Consensus 314 ~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~-i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 314 HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDEN-LKFWRVYDGDHVKRP 387 (401)
T ss_dssp SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSE-EEEEECCC-------
T ss_pred CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCc-EEEEECCCCcccccc
Confidence 99988876 458999999999886432 2346689999999999999999999999999 999999988876653
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=275.25 Aligned_cols=282 Identities=15% Similarity=0.195 Sum_probs=235.2
Q ss_pred ceEEEEECCCCCeeEeecCCeEEEEeCCcCccccccc--ccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC
Q psy3710 12 GLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQD--FTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK 89 (424)
Q Consensus 12 ~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~ 89 (424)
.++.|+||++ ++||+|.++.|+|||..+++...... .|...|.+++|+|+++++++++ .|++|++||+++
T Consensus 107 y~~~l~wS~~-n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs-------~Dg~v~iWd~~~ 178 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT-------SSAEVQLWDVQQ 178 (420)
T ss_dssp TCBCEEECTT-SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE-------TTSCEEEEETTT
T ss_pred cceeEEECCC-CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEE-------CCCeEEEEEcCC
Confidence 4567999976 58999997779999999998755443 4667899999999999999988 689999999999
Q ss_pred CcEEEEEe-ecCCeEEEEecCCceEEEe-eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEE
Q psy3710 90 KQVVICLE-FNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVH 167 (424)
Q Consensus 90 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~ 167 (424)
++.+..+. |...+.++.+++.....+. |+.+++||.......+..+..|... ++.+.++|++.++++ ++.|+.++
T Consensus 179 ~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~--~~~~~~~~~g~~l~s-~~~D~~v~ 255 (420)
T 4gga_A 179 QKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE--VCGLRWAPDGRHLAS-GGNDNLVN 255 (420)
T ss_dssp TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC--EEEEEECTTSSEEEE-EETTSCEE
T ss_pred CcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccc--eeeeeecCCCCeeee-eeccccce
Confidence 99999888 8899999998776544444 8999999997566777778877744 888999999999998 99999999
Q ss_pred EEeCCCCCC---CCcccccccCCeEEEEEccCCC-EEEE--EecCCcEEEEEECCCcceeeEEecc--eeeeeecCCCCe
Q psy3710 168 LVDLADPER---PPLDIAAHEAPLSCIALNQTGT-RLAT--ASYKGTLIRVFDTGSGQKLNELRRG--LCVLCPNSNNSL 239 (424)
Q Consensus 168 i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~--~~~d~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~ 239 (424)
+|+...+.. .......|...|.+++|+|++. .+++ |+.|+. |++||+.++++...+..+ +..+.+++++..
T Consensus 256 i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~-I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~ 334 (420)
T 4gga_A 256 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCSGACLSAVDAHSQVCSILWSPHYKE 334 (420)
T ss_dssp EEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE-EEEEETTTTEEEEEEECSSCEEEEEEETTTTE
T ss_pred EEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE-EEEEeCCccccceeeccccceeeeeecCCCCe
Confidence 999987532 3446678999999999999765 4444 457899 999999999998888765 667788999988
Q ss_pred EEEE-eecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeee
Q psy3710 240 LAFP-GRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE 307 (424)
Q Consensus 240 ~~~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~ 307 (424)
++++ |..|+.|++||+.+++ ++..+.+|.+.|++++|+|||++|++|+.|++ |++||+....+...
T Consensus 335 lv~~sg~~d~~I~iwd~~~~~-~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~t-vriWdv~~~~~~~~ 401 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTMA-KVAELKGHTSRVLSLTMSPDGATVASAAADET-LRLWRCFELDPARR 401 (420)
T ss_dssp EEEEECTTTCCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSCEEEEETTTE-EEEECCSCSSCC--
T ss_pred EEEEEecCCCEEEEEECCCCc-EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCe-EEEEECCCCCccch
Confidence 8775 4479999999999876 46678899999999999999999999999999 99999977655443
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=265.47 Aligned_cols=282 Identities=12% Similarity=0.075 Sum_probs=235.2
Q ss_pred ccccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeE
Q psy3710 4 GTSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 82 (424)
..+.+|.+.|++++| |++++|++|+.++ |++||+.+.+.......|.+.+.+++|+|+++.+++++ .|+.+
T Consensus 12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~dg~i 83 (313)
T 3odt_A 12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGG-------KDTMI 83 (313)
T ss_dssp EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEE-------TTSCE
T ss_pred HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEec-------CCCeE
Confidence 348899999999999 9999999999999 99999988887776777899999999999999999988 68999
Q ss_pred EEEECCCC---cEEEEEe-ecCCeEEEEecCCceEEEe-eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecC-CCCeE
Q psy3710 83 MIWDDLKK---QVVICLE-FNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNS-NNSLL 156 (424)
Q Consensus 83 ~iwd~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 156 (424)
++|++... +.+..+. |...|.++.|.++..+.+. |+.|++|| ..+....+..+..+ +.++.+.| ++..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~--v~~~~~~~~~~~~l 158 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK---EGSLVYNLQAHNAS--VWDAKVVSFSENKF 158 (313)
T ss_dssp EEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE---TTEEEEEEECCSSC--EEEEEEEETTTTEE
T ss_pred EEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc---CCcEEEecccCCCc--eeEEEEccCCCCEE
Confidence 99998654 4555665 8899999999655444444 89999999 45667777777644 77778777 88888
Q ss_pred EEeeccCCeEEEEeCCCCCCCCccccc-ccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeee
Q psy3710 157 AFPGRKSGHVHLVDLADPERPPLDIAA-HEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLC 232 (424)
Q Consensus 157 ~~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~ 232 (424)
++ ++.||.|++||.. .....+.. |...+.+++|+|++. +++++.|+. |++||+++++.+..+..+ +..++
T Consensus 159 ~~-~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~i~~~~ 232 (313)
T 3odt_A 159 LT-ASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGL-IKLVDMHTGDVLRTYEGHESFVYCIK 232 (313)
T ss_dssp EE-EETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSE-EEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EE-EECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCe-EEEEECCchhhhhhhhcCCceEEEEE
Confidence 87 9999999999943 34455555 899999999999988 999999999 999999999999888754 77889
Q ss_pred ecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec
Q psy3710 233 PNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR 309 (424)
Q Consensus 233 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 309 (424)
++|++ . +++++.||.|++||+++++ ....+..|...|.+++|+|+++ +++++.|+. |++||+++++......
T Consensus 233 ~~~~~-~-l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~-i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 233 LLPNG-D-IVSCGEDRTVRIWSKENGS-LKQVITLPAISIWSVDCMSNGD-IIVGSSDNL-VRIFSQEKSRWASEDE 304 (313)
T ss_dssp ECTTS-C-EEEEETTSEEEEECTTTCC-EEEEEECSSSCEEEEEECTTSC-EEEEETTSC-EEEEESCGGGCCC---
T ss_pred EecCC-C-EEEEecCCEEEEEECCCCc-eeEEEeccCceEEEEEEccCCC-EEEEeCCCc-EEEEeCCCCceeehhh
Confidence 99998 3 5569999999999999876 4566778999999999999998 667999999 9999999887765543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-37 Score=271.10 Aligned_cols=305 Identities=12% Similarity=0.132 Sum_probs=234.6
Q ss_pred cccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEE--eecCCeEEEEecCC---ceEEEe---ecc
Q psy3710 48 DFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICL--EFNAPVKGVRLRRD---KIVVVL---EGL 119 (424)
Q Consensus 48 ~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~---~~~~~~---~~~ 119 (424)
..|.+.|.+++|+|+++.++++++.. ..|+.|++||+.+++..... .|...|.+++|+|+ +.++++ |+.
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~---~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFA---RGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC-----CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred cCCCCceEEEEEcCCCceEEEecCcc---CCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 44889999999999998777666320 01799999999998875543 48899999999998 455554 899
Q ss_pred EEEEeecCCCceeEEEeeCCCCCeeEEE------eecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccC----CeE
Q psy3710 120 IKVYTFIQCPQQLHVFETNPNPKGLCVL------CPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEA----PLS 189 (424)
Q Consensus 120 i~v~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~v~ 189 (424)
|++||+......+..+..|... +.++ +++|++++|++ ++.||.|++||+.++......+..|.+ .+.
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~s~~~~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEI--INAIDGIGGLGIGEGAPEIVT-GSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSC--EEEEEEESGGGCC-CCCEEEE-EETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred EEEEeCCCCCccEEEEEecccc--eEEEeeccccccCCCccEEEE-EeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 9999997333377888877755 6666 56889999998 999999999999987446777766554 899
Q ss_pred EEE----EccCCCEEEEEecCCcEEEEEECCCcceeeEEe--cceeeeeecC---CCCeEEEEeecCCeEEEEeCCCCCC
Q psy3710 190 CIA----LNQTGTRLATASYKGTLIRVFDTGSGQKLNELR--RGLCVLCPNS---NNSLLAFPGRKSGHVHLVDLADPER 260 (424)
Q Consensus 190 ~~~----~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~dg~i~i~d~~~~~~ 260 (424)
+++ |+|+++++++++.|+. |++||+++++...... ..+..++++| ++..+++ ++.||.|++||+++.+.
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~ 246 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYDNGD-IKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVA-TSLEGKFHVFDMRTQHP 246 (357)
T ss_dssp EEEEECCCC-CCCEEEEEETTSE-EEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEE-EESTTEEEEEEEEEEET
T ss_pred EEEEEeccCCCCCEEEEEccCCe-EEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEE-ECCCCeEEEEeCcCCCc
Confidence 998 7889999999999999 9999999988765543 3478889999 6666554 89999999999988654
Q ss_pred CCe----eeccCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEECCCCceeeeeccCCcEEEEEeCCCcEEEEEccccccc
Q psy3710 261 PPL----DIAAHEAPLSCIALNQTGT-RLATASYKGTLIRVFDTGSGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKI 335 (424)
Q Consensus 261 ~~~----~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 335 (424)
... .+.+|...|++++|+|+++ +|++++.|+. |++||++++.....+.+++...... +..
T Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~g~~~~~~---~~~----------- 311 (357)
T 3i2n_A 247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG-LHLWKYEYPIQRSKKDSEGIEMGVA---GSV----------- 311 (357)
T ss_dssp TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEEEECCSCC--CCTTSCCCCCC---CEE-----------
T ss_pred ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc-EEEeecCCCcccccccCCCCccccc---ccc-----------
Confidence 322 2238999999999999998 8999999999 9999998776655544444222110 010
Q ss_pred cccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEE-EEeccCcEEEEEec
Q psy3710 336 NKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSII-VICADGSYYKFMFN 394 (424)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~dg~v~~~~~~ 394 (424)
..+..+..|.++++.++|+|++++|+ +++.||.|++|++.
T Consensus 312 -------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 312 -------------------SLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp -------------------EEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred -------------------ceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 01223556778899999999999998 79999999999997
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=282.07 Aligned_cols=275 Identities=16% Similarity=0.199 Sum_probs=212.2
Q ss_pred cccCCCeeeEEEeccC-ceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe---ecCCeEEEEecC-CceEEEe---ecc
Q psy3710 48 DFTDGGLGHVEMLFRC-NYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE---FNAPVKGVRLRR-DKIVVVL---EGL 119 (424)
Q Consensus 48 ~~~~~~i~~~~~~~~~-~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~-~~~~~~~---~~~ 119 (424)
..|...|++++|+|.. +.|++.+ .||+|+|||+.+++....+. |.+.|.+++|+| ++.++++ |++
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs-------~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGS-------KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEE-------TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEe-------CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 3467889999999954 5677666 58999999998776544333 789999999997 5655554 899
Q ss_pred EEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCC-
Q psy3710 120 IKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT- 198 (424)
Q Consensus 120 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 198 (424)
|++||++ ..........+.....+++++++|++.+|++ |+.||.|++||++. +.+..+.+|...|.+++|+|++.
T Consensus 189 v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~dg~i~~wd~~~--~~~~~~~~h~~~v~~v~~~p~~~~ 264 (435)
T 4e54_B 189 TRLQDFK-GNILRVFASSDTINIWFCSLDVSASSRMVVT-GDNVGNVILLNMDG--KELWNLRMHKKKVTHVALNPCCDW 264 (435)
T ss_dssp EEEEETT-SCEEEEEECCSSCSCCCCCEEEETTTTEEEE-ECSSSBEEEEESSS--CBCCCSBCCSSCEEEEEECTTCSS
T ss_pred EEEeecc-CCceeEEeccCCCCccEEEEEECCCCCEEEE-EeCCCcEeeeccCc--ceeEEEecccceEEeeeecCCCce
Confidence 9999996 4333333334444455778899999999998 99999999999975 56778899999999999999876
Q ss_pred EEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEc
Q psy3710 199 RLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALN 278 (424)
Q Consensus 199 ~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 278 (424)
++++++.|+. |++||+++.+....+ ....+|...|++++|+
T Consensus 265 ~~~s~s~d~~-v~iwd~~~~~~~~~~--------------------------------------~~~~~h~~~v~~~~~s 305 (435)
T 4e54_B 265 FLATASVDQT-VKIWDLRQVRGKASF--------------------------------------LYSLPHRHPVNAACFS 305 (435)
T ss_dssp EEEEEETTSB-CCEEETTTCCSSSCC--------------------------------------SBCCBCSSCEEECCBC
T ss_pred EEEEecCcce-eeEEecccccccceE--------------------------------------EEeeeccccccceeEC
Confidence 6789999999 999999876532211 1223799999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEECCCCceeee------------------eccCCcEEEEEe------------CCCcEEEEE
Q psy3710 279 QTGTRLATASYKGTLIRVFDTGSGQKLNE------------------LRRDSSYLCVSS------------DHGTVHVFS 328 (424)
Q Consensus 279 ~~~~~l~~~~~d~~~i~iwd~~~~~~~~~------------------~~~~~~~l~~~~------------~d~~i~iw~ 328 (424)
|+|++|++++.|+. |++||+.+++.... +.|++.++++++ .++.|++||
T Consensus 306 pdg~~l~s~~~D~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd 384 (435)
T 4e54_B 306 PDGARLLTTDQKSE-IRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFD 384 (435)
T ss_dssp TTSSEEEEEESSSC-EEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEEC
T ss_pred CCCCeeEEEcCCCE-EEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEE
Confidence 99999999999999 99999998876543 345566666664 235799999
Q ss_pred ccccccccccccceeeeccCccccCCceeeEEeecCCCceEE-EEecCCCeEEEEeccCcEEEEEecC
Q psy3710 329 VDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCIC-AFGADSNSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~l~~~~~dg~v~~~~~~~ 395 (424)
..+++.+.... ..|...+..+ +|+|+|++|++|+ |+.|++|++.+
T Consensus 385 ~~~g~~~~~l~---------------------~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 385 GNSGKMMCQLY---------------------DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp SSSCCEEEEEC---------------------CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred CCCCcEEEEEe---------------------CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 99887654321 1233445554 7999999999876 88999999973
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-37 Score=276.48 Aligned_cols=300 Identities=16% Similarity=0.213 Sum_probs=239.4
Q ss_pred EEEEeCCcCcccccccccCCCeeeEEEec-cCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe--------------
Q psy3710 33 FRIYNCDPLKEKERQDFTDGGLGHVEMLF-RCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-------------- 97 (424)
Q Consensus 33 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-------------- 97 (424)
+++|+.+..+.......|.+.|.+++|+| +++++++++ .|+.|++||+.+++....+.
T Consensus 25 ~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (408)
T 4a11_B 25 RRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGG-------SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDV 97 (408)
T ss_dssp HHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEE-------TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTC
T ss_pred ceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEc-------CCCeEEEEECCCCcccceEecccccccccccccc
Confidence 78888888777776777999999999999 999999988 68999999999876655543
Q ss_pred ecCCeEEEEecC-CceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecC---CCCeEEEeeccCCeEEEEe
Q psy3710 98 FNAPVKGVRLRR-DKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNS---NNSLLAFPGRKSGHVHLVD 170 (424)
Q Consensus 98 ~~~~v~~~~~~~-~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~dg~i~i~d 170 (424)
|...|.+++|+| ++.++++ |+.|++||+. ..+....+.. . ..+.++.+++ ++.++++ ++.+|.|++||
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~d 172 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTN-TLQTADVFNF-E--ETVYSHHMSPVSTKHCLVAV-GTRGPKVQLCD 172 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETT-TTEEEEEEEC-S--SCEEEEEECSSCSSCCEEEE-EESSSSEEEEE
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCC-CCccceeccC-C--CceeeeEeecCCCCCcEEEE-EcCCCeEEEEe
Confidence 788999999999 5544443 8999999997 6676666653 2 3356666666 4447887 99999999999
Q ss_pred CCCCCCCCcccccccCCeEEEEEccCCC-EEEEEecCCcEEEEEECCCcc-eeeEEecceeeeeecCCCCeEEEEeecCC
Q psy3710 171 LADPERPPLDIAAHEAPLSCIALNQTGT-RLATASYKGTLIRVFDTGSGQ-KLNELRRGLCVLCPNSNNSLLAFPGRKSG 248 (424)
Q Consensus 171 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dg 248 (424)
++++ .....+..|...|.+++|+|+++ .+++++.|+. |++||++++. .+..+... .+
T Consensus 173 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~-i~i~d~~~~~~~~~~~~~~--------~~----------- 231 (408)
T 4a11_B 173 LKSG-SCSHILQGHRQEILAVSWSPRYDYILATASADSR-VKLWDVRRASGCLITLDQH--------NG----------- 231 (408)
T ss_dssp SSSS-CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSC-EEEEETTCSSCCSEECCTT--------TT-----------
T ss_pred CCCc-ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCc-EEEEECCCCCccccccccc--------cc-----------
Confidence 9986 77788889999999999999998 5889999999 9999998775 33332211 00
Q ss_pred eEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec-----------------cC
Q psy3710 249 HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-----------------RD 311 (424)
Q Consensus 249 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-----------------~~ 311 (424)
............|...|.+++|+|++++|++++.|+. |++||+.+++....+. ..
T Consensus 232 -------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (408)
T 4a11_B 232 -------KKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR-MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC 303 (408)
T ss_dssp -------CSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSS
T ss_pred -------ccceeeccccccccCceeEEEEcCCCCEEEEecCCCe-EEEEECCCCccceeccccccccccccceeEEecCC
Confidence 0011123334589999999999999999999999999 9999999987654332 23
Q ss_pred CcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEE
Q psy3710 312 SSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKF 391 (424)
Q Consensus 312 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~ 391 (424)
+..+++++.|+.|++||+.+++.+.. +..|.+.+..++|+|++++|++++.||.|++|
T Consensus 304 ~~~~~~~~~~~~i~v~d~~~~~~~~~----------------------~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 361 (408)
T 4a11_B 304 SSEFVFVPYGSTIAVYTVYSGEQITM----------------------LKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361 (408)
T ss_dssp SSCEEEEEETTEEEEEETTTCCEEEE----------------------ECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CceEEEEecCCEEEEEECcCCcceee----------------------eccCCCeEEEEEEcCCCCEEEEECCCCeEEEE
Confidence 56677788899999999998775433 44567789999999999999999999999999
Q ss_pred EecC
Q psy3710 392 MFNS 395 (424)
Q Consensus 392 ~~~~ 395 (424)
++..
T Consensus 362 ~~~~ 365 (408)
T 4a11_B 362 VPSL 365 (408)
T ss_dssp EECC
T ss_pred eCCC
Confidence 9984
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=258.87 Aligned_cols=277 Identities=14% Similarity=0.198 Sum_probs=229.1
Q ss_pred eEEEEECCCCCeeEeecCCeEEEEeCCcCccccccc--ccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCC
Q psy3710 13 LLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQD--FTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKK 90 (424)
Q Consensus 13 V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~ 90 (424)
.++|+||+++ +||+|.++.|+|||+++++...... .|...|.+++|+|+++++++++ .|++|++||++++
T Consensus 28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs-------~Dg~v~iw~~~~~ 99 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT-------SSAEVQLWDVQQQ 99 (318)
T ss_dssp CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE-------TTSEEEEEETTTT
T ss_pred ceEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEE-------CCCcEEEeecCCc
Confidence 5789999986 8999987779999999998755443 4677899999999999999988 6899999999999
Q ss_pred cEEEEEe-ecCCeEEEEecCCceEEEe-eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEE
Q psy3710 91 QVVICLE-FNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHL 168 (424)
Q Consensus 91 ~~~~~~~-~~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i 168 (424)
+.+..+. |...+.++.+.+.....+. ++.+.+|+.......+..+..|... +..+.++++++++++ ++.||.|++
T Consensus 100 ~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~s-~~~d~~i~i 176 (318)
T 4ggc_A 100 KRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE--VCGLRWAPDGRHLAS-GGNDNLVNV 176 (318)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC--EEEEEECTTSSEEEE-EETTSCEEE
T ss_pred eeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCc--eEEEEEcCCCCEEEE-EecCcceeE
Confidence 9999888 7888888877766544444 8899999987556667777777644 778889999999998 999999999
Q ss_pred EeCCCCCC---CCcccccccCCeEEEEEccCCCEE---EEEecCCcEEEEEECCCcceeeEEecc--eeeeeecCCCCeE
Q psy3710 169 VDLADPER---PPLDIAAHEAPLSCIALNQTGTRL---ATASYKGTLIRVFDTGSGQKLNELRRG--LCVLCPNSNNSLL 240 (424)
Q Consensus 169 ~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~d~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~ 240 (424)
||+.+++. .......|.+.|.+++++|++..+ ++++.++. |++||.+........... +...++.+.+..+
T Consensus 177 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 255 (318)
T 4ggc_A 177 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCSGACLSAVDAHSQVCSILWSPHYKEL 255 (318)
T ss_dssp EESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCE-EEEEETTTCCEEEEEECSSCEEEEEEETTTTEE
T ss_pred EECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCE-EEEEecccccccccccceeeeeeeeecccccce
Confidence 99987532 233455788899999999977643 35677888 999999988777666543 6778889998887
Q ss_pred EEE-eecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCc
Q psy3710 241 AFP-GRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ 303 (424)
Q Consensus 241 ~~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~ 303 (424)
+++ |+.|+.|++||+++++ ++..+.+|.+.|++++|+|+|++|++++.|++ |+|||+.+..
T Consensus 256 ~~~sg~~d~~i~iwd~~~~~-~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~-v~iWd~~~~d 317 (318)
T 4ggc_A 256 ISGHGFAQNQLVIWKYPTMA-KVAELKGHTSRVLSLTMSPDGATVASAAADET-LRLWRCFELD 317 (318)
T ss_dssp EEEECTTTCCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSCEEEEETTTE-EEEECCSCCC
T ss_pred EEEEEcCCCEEEEEECCCCc-EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCe-EEEEECCCCC
Confidence 764 4589999999999876 46678899999999999999999999999999 9999997653
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=262.26 Aligned_cols=249 Identities=14% Similarity=0.136 Sum_probs=198.2
Q ss_pred ccccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcC--cccccccccCCCeeeEEEecc--CceEEEEeCCcCCCcC
Q psy3710 4 GTSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPL--KEKERQDFTDGGLGHVEMLFR--CNYLALVGGGTHPKYP 78 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~~~~~ 78 (424)
..+.+|.+.|++++|+|+|++||+|+.|+ |+||+++.. +.......|.+.|.+++|+++ ++++++++ .
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s-------~ 75 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS-------Y 75 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEE-------T
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEc-------C
Confidence 45789999999999999999999999998 999998754 445556778999999999864 78888888 6
Q ss_pred CCeEEEEECCCCc--EEEEEe-ecCCeEEEEecCC--ceEEEe---eccEEEEeecCCCc-eeEEEeeCCCCCeeEEEee
Q psy3710 79 NNRVMIWDDLKKQ--VVICLE-FNAPVKGVRLRRD--KIVVVL---EGLIKVYTFIQCPQ-QLHVFETNPNPKGLCVLCP 149 (424)
Q Consensus 79 d~~i~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~---~~~i~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 149 (424)
|++|++||+++++ .+..+. |...|.+++|+|+ +.++++ |+.|++||++.... ....+..|. ..+.+++|
T Consensus 76 D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~--~~v~~~~~ 153 (297)
T 2pm7_B 76 DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHA--IGVNSASW 153 (297)
T ss_dssp TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCS--SCEEEEEE
T ss_pred CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeeccc--CccceEee
Confidence 8999999998874 444555 7889999999997 555554 89999999973322 234555665 44888899
Q ss_pred cCC-------------CCeEEEeeccCCeEEEEeCCCCCC---CCcccccccCCeEEEEEccCC---CEEEEEecCCcEE
Q psy3710 150 NSN-------------NSLLAFPGRKSGHVHLVDLADPER---PPLDIAAHEAPLSCIALNQTG---TRLATASYKGTLI 210 (424)
Q Consensus 150 ~~~-------------~~~l~~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~~i 210 (424)
+|+ +++|++ |+.|+.|++||++++.. ....+.+|...|.+++|+|++ .+|++++.|++ |
T Consensus 154 ~p~~~~~~~~~~~~~~~~~l~s-gs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-v 231 (297)
T 2pm7_B 154 APATIEEDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-C 231 (297)
T ss_dssp CCCC------------CCEEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-E
T ss_pred cCCcccccccCCCCCCcceEEE-EcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc-E
Confidence 886 467887 99999999999987522 345678999999999999984 79999999999 9
Q ss_pred EEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCC
Q psy3710 211 RVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK 290 (424)
Q Consensus 211 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 290 (424)
++||+++........ ......|...|.+++|+|++++||+++.|
T Consensus 232 ~iWd~~~~~~~~~~~------------------------------------~~~~~~~~~~v~~~~~s~~g~~las~~~D 275 (297)
T 2pm7_B 232 IIWTQDNEQGPWKKT------------------------------------LLKEEKFPDVLWRASWSLSGNVLALSGGD 275 (297)
T ss_dssp EEEEESSTTSCCEEE------------------------------------ESSSSCCSSCEEEEEECSSSCCEEEEETT
T ss_pred EEEEeCCCCCcccee------------------------------------eeecccCCCcEEEEEECCCCCEEEEEcCC
Confidence 999987643110000 00012577889999999999999999999
Q ss_pred CcEEEEEECC
Q psy3710 291 GTLIRVFDTG 300 (424)
Q Consensus 291 ~~~i~iwd~~ 300 (424)
+. |++|+..
T Consensus 276 ~~-v~lw~~~ 284 (297)
T 2pm7_B 276 NK-VTLWKEN 284 (297)
T ss_dssp SC-EEEEEEC
T ss_pred Cc-EEEEEEC
Confidence 99 9999976
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=285.24 Aligned_cols=314 Identities=12% Similarity=0.065 Sum_probs=243.6
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEE
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMI 84 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 84 (424)
-++-...|.+++|||||+++|+++.|+ |+ |...++.+ ..|...+..++|+|++ . ++.+.+
T Consensus 11 ~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg------~--------~~~~~~ 71 (588)
T 2j04_A 11 RKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE------F--------ENKLDF 71 (588)
T ss_dssp SCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC------C--------CCTTTT
T ss_pred HhHhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC------C--------cceEEE
Confidence 456678999999999999999999999 88 75555443 5688999999999988 2 577777
Q ss_pred EECCCCcEEEEEeecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCC---CCeeEEEeecCCCCeEEE
Q psy3710 85 WDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPN---PKGLCVLCPNSNNSLLAF 158 (424)
Q Consensus 85 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~ 158 (424)
|+.+ +.....+.+...|.+++|+|+|..+|+ ||.|++|+.. . .+..+. |.. ...+.+++|||||++|++
T Consensus 72 ~~~~-~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~-~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAs 146 (588)
T 2j04_A 72 ELAQ-QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN-K--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVV 146 (588)
T ss_dssp SCCC-SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETT-E--EEEECC-CSSCSTTTCEEEEEECSSSSCEEE
T ss_pred EeCC-CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-c--eeeecc-CCCccccccEEEEEEcCCCCEEEE
Confidence 7753 223334456788999999999988876 8999999953 2 555555 432 235889999999999998
Q ss_pred eeccCCeEEEEeCCCCCC------CCccc----ccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcce---eeEEe
Q psy3710 159 PGRKSGHVHLVDLADPER------PPLDI----AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK---LNELR 225 (424)
Q Consensus 159 ~~~~dg~i~i~d~~~~~~------~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~---~~~~~ 225 (424)
|+.||+|++||+.++.. .+..+ .+|.+.|.+++|+|+| +++++.|+. |++||+.+++. ..+++
T Consensus 147 -gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t-VrlWd~~~~~~~~~~~tL~ 222 (588)
T 2j04_A 147 -GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS-VFSMTVSASSHQPVSRMIQ 222 (588)
T ss_dssp -EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC-EEEECCCSSSSCCCEEEEE
T ss_pred -EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe-EEEEECCCCccccceeeec
Confidence 99999999999998521 12444 6788999999999999 888899999 99999988773 24453
Q ss_pred -cc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEE--cCCCCEEEEEeCCCcEEEEEEC
Q psy3710 226 -RG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIAL--NQTGTRLATASYKGTLIRVFDT 299 (424)
Q Consensus 226 -~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~~i~iwd~ 299 (424)
.+ +..++|+ +..++. ++ +++|++||+.+++...... +|.+.+..++| +|++..|++++.+|+ ++|..
T Consensus 223 ~~h~~~V~svaFs--g~~LAS-a~-~~tIkLWd~~~~~~~~~~~-gh~~~V~~va~~~s~d~~~La~a~edG~--klw~~ 295 (588)
T 2j04_A 223 NASRRKITDLKIV--DYKVVL-TC-PGYVHKIDLKNYSISSLKT-GSLENFHIIPLNHEKESTILLMSNKTSY--KVLLE 295 (588)
T ss_dssp CCCSSCCCCEEEE--TTEEEE-EC-SSEEEEEETTTTEEEEEEC-SCCSCCCEEEETTCSSCEEEEECSSCEE--EEEES
T ss_pred ccccCcEEEEEEE--CCEEEE-Ee-CCeEEEEECCCCeEEEEEc-CCCceEEEEEeeeCCCCCEEEEEcCCCC--EEEee
Confidence 32 6677887 555554 44 6999999999866322222 79999999999 999999999999985 99998
Q ss_pred CCCceeeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeE
Q psy3710 300 GSGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSI 379 (424)
Q Consensus 300 ~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 379 (424)
.. ..++|++..+++. |+++++|+...+. +..... ...|..++|||||+.+
T Consensus 296 d~----~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~-----------------------~~~I~~va~SPdG~~l 345 (588)
T 2j04_A 296 DE----LHVTADNIIAPYL--EKKFKKWSTIWNE-FNNYET-----------------------TLVIHGISLSPDGYSI 345 (588)
T ss_dssp SS----EEEECCCSSHHHH--HHHHHHTTTTTTS-SSSSCC-----------------------EEEEEEEEECTTSSEE
T ss_pred cc----EEECCCceEEEEc--CCEEEEEECCCCc-eeeecc-----------------------ceEEEEEEECCCCCEE
Confidence 82 3499999988885 9999999986543 222111 1236689999999999
Q ss_pred EEEec
Q psy3710 380 IVICA 384 (424)
Q Consensus 380 ~~~~~ 384 (424)
|+++.
T Consensus 346 A~~~~ 350 (588)
T 2j04_A 346 AIVYD 350 (588)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99876
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=268.45 Aligned_cols=300 Identities=14% Similarity=0.176 Sum_probs=236.4
Q ss_pred ccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCc------EEEEEe-ecCCeEEEEecCC----c---e
Q psy3710 47 QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ------VVICLE-FNAPVKGVRLRRD----K---I 112 (424)
Q Consensus 47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~------~~~~~~-~~~~v~~~~~~~~----~---~ 112 (424)
...|.+.|.+++|+| +++++++ .|+.|++||+.+++ .+..+. |...|.+++|+|+ + .
T Consensus 12 ~~~h~~~i~~~~~~~--~~l~s~~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~ 82 (397)
T 1sq9_A 12 GKAHDADIFSVSACN--SFTVSCS-------GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 82 (397)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEE-------TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred hhhhhcCeEEEEecC--CeEEEEc-------CCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc
Confidence 456899999999988 7888887 58999999999887 566666 8999999999999 7 6
Q ss_pred EEEe---eccEEEEeecCCCce-----eEEEeeCCCC---CeeEEEeec----CCCCe-EEEeeccCCeEEEEeCCC---
Q psy3710 113 VVVL---EGLIKVYTFIQCPQQ-----LHVFETNPNP---KGLCVLCPN----SNNSL-LAFPGRKSGHVHLVDLAD--- 173 (424)
Q Consensus 113 ~~~~---~~~i~v~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~----~~~~~-l~~~~~~dg~i~i~d~~~--- 173 (424)
++++ |+.|++|++. ..+. +..+..+... ..+.+++|+ |++++ +++ ++.||.|++||+..
T Consensus 83 ~l~s~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRIT-REDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVA-TDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEEEETTSCEEEEEEE-ECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEE-EETTSCEEEEEEESSSS
T ss_pred EEEEEcCCCCEEEEEcc-CCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEE-EeCCCcEEEEeCCcccc
Confidence 6665 8999999997 5554 6667666321 458899999 99999 887 99999999999987
Q ss_pred ---CCCCCc-----cc-------ccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEec---------cee
Q psy3710 174 ---PERPPL-----DI-------AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR---------GLC 229 (424)
Q Consensus 174 ---~~~~~~-----~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~---------~~~ 229 (424)
. ..+. .+ ..|...|.+++|+|++ ++++++.|+. |++||+++++.+..+.. .+.
T Consensus 161 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~h~~~~~~i~ 237 (397)
T 1sq9_A 161 ESNS-LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT-VQISELSTLRPLYNFESQHSMINNSNSIR 237 (397)
T ss_dssp HHHH-TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE-EEEEETTTTEEEEEEECCC---CCCCCEE
T ss_pred cccc-ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCc-EEEEECCCCceeEEEeccccccccCCccc
Confidence 5 4444 55 4488999999999999 9999999999 99999999998888765 267
Q ss_pred eeeecCCCCeEEEEeecC---CeEEEEeCCCCCCCCeeecc-------------CCCCeEEEEEcCCCCEEEEEeCCCcE
Q psy3710 230 VLCPNSNNSLLAFPGRKS---GHVHLVDLADPERPPLDIAA-------------HEAPLSCIALNQTGTRLATASYKGTL 293 (424)
Q Consensus 230 ~~~~~~~~~~~~~~~~~d---g~i~i~d~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~d~~~ 293 (424)
.++++|++..+++ ++.| +.|++||+++++ ....+.. |...|.+++|+|++++|++++.|+.
T Consensus 238 ~i~~~~~~~~l~~-~~~d~~~g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~- 314 (397)
T 1sq9_A 238 SVKFSPQGSLLAI-AHDSNSFGCITLYETEFGE-RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK- 314 (397)
T ss_dssp EEEECSSTTEEEE-EEEETTEEEEEEEETTTCC-EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE-
T ss_pred eEEECCCCCEEEE-EecCCCCceEEEEECCCCc-ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe-
Confidence 8899999887665 7888 999999999875 3455666 9999999999999999999999999
Q ss_pred EEEEECCCCceeeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEe
Q psy3710 294 IRVFDTGSGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFG 373 (424)
Q Consensus 294 i~iwd~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 373 (424)
|++||+++++.+..+.....-+. ...| ...+.. .....|..++..++|+
T Consensus 315 i~iwd~~~~~~~~~~~~~~~~~~-~~~~-------~~~g~~-----------------------~~~~~~~~~v~~~~~~ 363 (397)
T 1sq9_A 315 LRFWDVKTKERITTLNMHCDDIE-IEED-------ILAVDE-----------------------HGDSLAEPGVFDVKFL 363 (397)
T ss_dssp EEEEETTTTEEEEEEECCGGGCS-SGGG-------CCCBCT-----------------------TSCBCSSCCEEEEEEE
T ss_pred EEEEEcCCCceeEEEecccCccc-chhh-------hhcccc-----------------------ccccccCCceeEEEec
Confidence 99999999887776651100000 0000 011000 0023356789999999
Q ss_pred cCC----------CeEEEEeccCcEEEEEec
Q psy3710 374 ADS----------NSIIVICADGSYYKFMFN 394 (424)
Q Consensus 374 ~~~----------~~l~~~~~dg~v~~~~~~ 394 (424)
|++ ++|++++.||.|++|++.
T Consensus 364 ~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 364 KKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp CTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred cccccccccccccceEEEecCCCcEEEEEcC
Confidence 998 799999999999999997
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-36 Score=265.11 Aligned_cols=281 Identities=13% Similarity=0.119 Sum_probs=207.8
Q ss_pred CCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcE--------EEEE--e-ecCCeEEEEecCCceEEEe---
Q psy3710 51 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQV--------VICL--E-FNAPVKGVRLRRDKIVVVL--- 116 (424)
Q Consensus 51 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~--------~~~~--~-~~~~v~~~~~~~~~~~~~~--- 116 (424)
.-+|.+++|+|++..|++.+++.....-++.|++|++..+.. ...+ . +...+.+++++++..+.+.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 347999999999999998876532222356899999865431 2222 2 4567888888777555442
Q ss_pred ---------eccEEEEeecCCCceeEEEee------CCCCCeeEEEeecCCCCeEEE-eeccCCeEEEEeCCCCCCCCcc
Q psy3710 117 ---------EGLIKVYTFIQCPQQLHVFET------NPNPKGLCVLCPNSNNSLLAF-PGRKSGHVHLVDLADPERPPLD 180 (424)
Q Consensus 117 ---------~~~i~v~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~-~~~~dg~i~i~d~~~~~~~~~~ 180 (424)
++.+++|++......+..... ......+.+++|+|||+++++ +++.|+.|++||++++ +.+..
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~-~~~~~ 172 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL-TEKFE 172 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT-EEEEE
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC-cEEEE
Confidence 678999998644433332221 112234678899999999865 3557999999999986 45555
Q ss_pred cccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCC
Q psy3710 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER 260 (424)
Q Consensus 181 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~ 260 (424)
+ .|.+.|.+++|+|+|+++++++.++ +++|+..+++.+....
T Consensus 173 ~-~~~~~V~~v~fspdg~~l~s~s~~~--~~~~~~~~~~~~~~~~----------------------------------- 214 (365)
T 4h5i_A 173 I-ETRGEVKDLHFSTDGKVVAYITGSS--LEVISTVTGSCIARKT----------------------------------- 214 (365)
T ss_dssp E-ECSSCCCEEEECTTSSEEEEECSSC--EEEEETTTCCEEEEEC-----------------------------------
T ss_pred e-CCCCceEEEEEccCCceEEecccee--EEEEEeccCcceeeee-----------------------------------
Confidence 5 4788999999999999999998665 7788877766543321
Q ss_pred CCeeeccCCCCeEEEEEcCCCCEEEEEeCCC----cEEEEEECCCCcee----------------eeeccCCcEEEEEeC
Q psy3710 261 PPLDIAAHEAPLSCIALNQTGTRLATASYKG----TLIRVFDTGSGQKL----------------NELRRDSSYLCVSSD 320 (424)
Q Consensus 261 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~~i~iwd~~~~~~~----------------~~~~~~~~~l~~~~~ 320 (424)
...|...|.+++|+|+++++++++.|+ . +++|++..+... ..|+|+|++||+|+.
T Consensus 215 ----~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~ 289 (365)
T 4h5i_A 215 ----DFDKNWSLSKINFIADDTVLIAASLKKGKGIV-LTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN 289 (365)
T ss_dssp ----CCCTTEEEEEEEEEETTEEEEEEEESSSCCEE-EEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET
T ss_pred ----cCCCCCCEEEEEEcCCCCEEEEEecCCcceeE-EeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC
Confidence 115777889999999999999988877 4 788887655321 136789999999999
Q ss_pred CCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCC
Q psy3710 321 HGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSK 396 (424)
Q Consensus 321 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~ 396 (424)
|++|+|||+.+++++... .+.|..+|+.++|+|||++|++|+.|++|+||+++.+
T Consensus 290 D~~V~iwd~~~~~~~~~~---------------------~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 290 DNSIALVKLKDLSMSKIF---------------------KQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSCEEEEETTTTEEEEEE---------------------TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCEEEEEECCCCcEEEEe---------------------cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999887764321 1346788999999999999999999999999999754
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-37 Score=273.29 Aligned_cols=302 Identities=15% Similarity=0.212 Sum_probs=231.3
Q ss_pred ccccCCCeeeEEEecc---CceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe------ecCCeEEEEecCC----ceE
Q psy3710 47 QDFTDGGLGHVEMLFR---CNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE------FNAPVKGVRLRRD----KIV 113 (424)
Q Consensus 47 ~~~~~~~i~~~~~~~~---~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~----~~~ 113 (424)
...|.+.|.+++|+|+ ++.++++++ .++.|++||+.+++.+..+. +...|.+++|+|+ +.+
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~------~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 87 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATV------GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPL 87 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEE------ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEEC------CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCE
Confidence 3458899999999984 443333332 26799999999888877766 3467999999998 555
Q ss_pred EEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecC-CCCeEEEeeccCCeEEEEeCCCCCCCCccc---ccccC
Q psy3710 114 VVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNS-NNSLLAFPGRKSGHVHLVDLADPERPPLDI---AAHEA 186 (424)
Q Consensus 114 ~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~ 186 (424)
+++ |+.|++||+. +++.+..+..|.. .+.+++|+| ++.++++ |+.||.|++||++++ +....+ ..|..
T Consensus 88 l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~ 162 (366)
T 3k26_A 88 LAVAGSRGIIRIINPI-TMQCIKHYVGHGN--AINELKFHPRDPNLLLS-VSKDHALRLWNIQTD-TLVAIFGGVEGHRD 162 (366)
T ss_dssp EEEEETTCEEEEECTT-TCCEEEEEESCCS--CEEEEEECSSCTTEEEE-EETTSCEEEEETTTT-EEEEEECSTTSCSS
T ss_pred EEEecCCCEEEEEEch-hceEeeeecCCCC--cEEEEEECCCCCCEEEE-EeCCCeEEEEEeecC-eEEEEecccccccC
Confidence 654 8999999996 7788888887764 488999999 8888887 999999999999986 555555 68999
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec
Q psy3710 187 PLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA 266 (424)
Q Consensus 187 ~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~ 266 (424)
.|.+++|+|++++|++++.|+. |++||+++++....+.. ...+.|++..+.+.... . .........
T Consensus 163 ~v~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~ 228 (366)
T 3k26_A 163 EVLSADYDLLGEKIMSCGMDHS-LKLWRINSKRMMNAIKE---SYDYNPNKTNRPFISQK-----I-----HFPDFSTRD 228 (366)
T ss_dssp CEEEEEECTTSSEEEEEETTSC-EEEEESCSHHHHHHHHH---HHTCCGGGCSSCCCCEE-----E-----CCCSEEECS
T ss_pred ceeEEEECCCCCEEEEecCCCC-EEEEECCCCccccccce---eEEecCCCCccccccee-----e-----ccCcccccc
Confidence 9999999999999999999999 99999998876655443 22333433333221100 0 011123334
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCce--------------eee------------eccC--CcEEEEE
Q psy3710 267 AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK--------------LNE------------LRRD--SSYLCVS 318 (424)
Q Consensus 267 ~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~--------------~~~------------~~~~--~~~l~~~ 318 (424)
.|...|.+++|+ +++|++++.|+. |++||+.+++. +.. |+|+ +++|+++
T Consensus 229 ~~~~~v~~~~~~--~~~l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~ 305 (366)
T 3k26_A 229 IHRNYVDCVRWL--GDLILSKSCENA-IVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALG 305 (366)
T ss_dssp SCSSCCCEEEEE--TTEEEEECSSSE-EEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEE
T ss_pred CCcceEEEEEEc--CCEEEEEecCCE-EEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEE
Confidence 699999999998 679999999999 99999987654 322 4567 9999999
Q ss_pred eCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeec--CCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 319 SDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIP--SDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 319 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
+.||.|++||+.+++..... ...+..| ...+..++|+|++++|++++.||.|++|++.
T Consensus 306 ~~dg~i~vwd~~~~~~~~~~------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 306 NQVGKLYVWDLEVEDPHKAK------------------CTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CTTSCEEEEECCSSSGGGCE------------------EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ecCCcEEEEECCCCCCcccc------------------ceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999999987654311 1123334 5789999999999999999999999999985
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=278.90 Aligned_cols=236 Identities=14% Similarity=0.129 Sum_probs=185.2
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcC--cccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeE
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPL--KEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 82 (424)
...|.++|++++|+|+|++||+|+.++ |++|++.++ +.......|.+.|.+++|+|+++++++++ .|++|
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-------~d~~v 79 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCS-------QDRNA 79 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEE-------TTSSE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEe-------CCCeE
Confidence 344778999999999999999998888 999999887 56666777899999999999999999998 68999
Q ss_pred EEEECCCCc---EEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCc---eeEEEee-CCCCCeeEEEeecC
Q psy3710 83 MIWDDLKKQ---VVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQ---QLHVFET-NPNPKGLCVLCPNS 151 (424)
Q Consensus 83 ~iwd~~~~~---~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~ 151 (424)
++||+.+++ ....+. |...|.+++|+|++..+++ |+.|++||++ ..+ ....+.. |. ..+.+++|+|
T Consensus 80 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~h~--~~v~~~~~~~ 156 (377)
T 3dwl_C 80 YVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFE-QENDWWVSKHLKRPLR--STILSLDWHP 156 (377)
T ss_dssp EEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC------CCCCEEECSSCC--SCEEEEEECT
T ss_pred EEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEEC-CcccceeeeEeecccC--CCeEEEEEcC
Confidence 999999877 444444 8899999999999866665 8999999997 443 3556655 54 4588999999
Q ss_pred CCCeEEEeeccCCeEEEEeCCCCC-----------------CCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEE
Q psy3710 152 NNSLLAFPGRKSGHVHLVDLADPE-----------------RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 214 (424)
Q Consensus 152 ~~~~l~~~~~~dg~i~i~d~~~~~-----------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd 214 (424)
++++|++ |+.|+.|++||+.... .....+ +|...|.+++|+|++++|++++.|+. |++||
T Consensus 157 ~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd 233 (377)
T 3dwl_C 157 NNVLLAA-GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS-VTIAY 233 (377)
T ss_dssp TSSEEEE-EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE-EC-CE
T ss_pred CCCEEEE-EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc-EEEEE
Confidence 9999998 9999999999986321 223344 89999999999999999999999999 99999
Q ss_pred CCCcce----eeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCC
Q psy3710 215 TGSGQK----LNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLA 256 (424)
Q Consensus 215 ~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~ 256 (424)
+++++. +..+..+ +..++++|++..++ +|+.++.+ +|+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 234 PSAPEQPPRALITVKLSQLPLRSLLWANESAIVA-AGYNYSPI-LLQGN 280 (377)
T ss_dssp ECSTTSCEEECCCEECSSSCEEEEEEEETTEEEE-EESSSSEE-EECCC
T ss_pred CCCCCCcceeeEeecCCCCceEEEEEcCCCCEEE-EEcCCcEE-EEEeC
Confidence 999887 6666654 67889999987554 46655555 77665
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=267.96 Aligned_cols=282 Identities=15% Similarity=0.124 Sum_probs=207.1
Q ss_pred CCceEEEEECCCCCeeEeecCC--------eEEEEeCCcCccccc----------ccccCCCeeeEEEeccCceEEEEeC
Q psy3710 10 KNGLLYAGFNQDQGCFACGMED--------GFRIYNCDPLKEKER----------QDFTDGGLGHVEMLFRCNYLALVGG 71 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~~~--------~i~iw~~~~~~~~~~----------~~~~~~~i~~~~~~~~~~~l~~~~~ 71 (424)
.-||++++|+|||++|++|+.+ .|++|+++....... ...|...+ +++.++++.+++...
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v--~s~~~~~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSP--TAIDASKGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCC--CEEEEETTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCce--EEEEeCCCEEEEEEC
Confidence 4589999999999999987532 299999876544211 12234445 445667777665432
Q ss_pred CcC----CCcCCCeEEEEECCCCcEE-EEE---e------ecCCeEEEEecCCceEEE--e---eccEEEEeecCCCcee
Q psy3710 72 GTH----PKYPNNRVMIWDDLKKQVV-ICL---E------FNAPVKGVRLRRDKIVVV--L---EGLIKVYTFIQCPQQL 132 (424)
Q Consensus 72 ~~~----~~~~d~~i~iwd~~~~~~~-~~~---~------~~~~v~~~~~~~~~~~~~--~---~~~i~v~~~~~~~~~~ 132 (424)
... ....|+.+++|++.+.... ... . +...+.+++|+||+.+++ + |+.|++||+. +.+.+
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~-~~~~~ 170 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPS-DLTEK 170 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETT-TTEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECC-CCcEE
Confidence 110 0114789999997654322 211 1 123588999999997654 3 7899999996 77777
Q ss_pred EEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCC-cccccccCCeEEEEEccCCCEEEEEecCC----
Q psy3710 133 HVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPP-LDIAAHEAPLSCIALNQTGTRLATASYKG---- 207 (424)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---- 207 (424)
..+. +. ..+.+++|+|+++++++ ++. +.+.+|+..++.... .....|...|.+++|+|+++.+++++.|+
T Consensus 171 ~~~~-~~--~~V~~v~fspdg~~l~s-~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~ 245 (365)
T 4h5i_A 171 FEIE-TR--GEVKDLHFSTDGKVVAY-ITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGI 245 (365)
T ss_dssp EEEE-CS--SCCCEEEECTTSSEEEE-ECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCE
T ss_pred EEeC-CC--CceEEEEEccCCceEEe-ccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCccee
Confidence 7775 33 34788999999999997 665 456666666552222 24557889999999999999999999887
Q ss_pred cEEEEEECCCccee----eEEec---ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCC
Q psy3710 208 TLIRVFDTGSGQKL----NELRR---GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT 280 (424)
Q Consensus 208 ~~i~iwd~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 280 (424)
. +++|++...... ..+.. .+.+++++|++..++. |+.|++|++||+++++.....+.+|..+|++++|+||
T Consensus 246 ~-i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las-gs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpd 323 (365)
T 4h5i_A 246 V-LTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL-ASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPD 323 (365)
T ss_dssp E-EEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE-EETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTT
T ss_pred E-EeecccccceecceeeeeecCCCCCeEeEEECCCCCceEE-EcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCC
Confidence 5 888998766432 23333 3788999999987665 9999999999999877544446799999999999999
Q ss_pred CCEEEEEeCCCcEEEEEECCCC
Q psy3710 281 GTRLATASYKGTLIRVFDTGSG 302 (424)
Q Consensus 281 ~~~l~~~~~d~~~i~iwd~~~~ 302 (424)
|++||++|.|++ |||||+...
T Consensus 324 g~~laS~S~D~t-vrvw~ip~~ 344 (365)
T 4h5i_A 324 STYVASVSAANT-IHIIKLPLN 344 (365)
T ss_dssp SCEEEEEETTSE-EEEEECCTT
T ss_pred CCEEEEEeCCCe-EEEEEcCCC
Confidence 999999999999 999998643
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-36 Score=273.68 Aligned_cols=278 Identities=12% Similarity=0.197 Sum_probs=216.6
Q ss_pred cccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcc-----------cccccccC------------CCeeeEEEecc
Q psy3710 7 STYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKE-----------KERQDFTD------------GGLGHVEMLFR 62 (424)
Q Consensus 7 ~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~-----------~~~~~~~~------------~~i~~~~~~~~ 62 (424)
..|.+.|++++|+|+|++||+|+.++ |+||++.+++. ......|. +.|..++|+|+
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 35789999999999999999999988 99999987662 33344566 78999999999
Q ss_pred C--ceEEEEeCCcCCCcCCCeEEEEECCCCcEE---------------------------------------EEE--eec
Q psy3710 63 C--NYLALVGGGTHPKYPNNRVMIWDDLKKQVV---------------------------------------ICL--EFN 99 (424)
Q Consensus 63 ~--~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~---------------------------------------~~~--~~~ 99 (424)
+ ..+++++ .|++|++||+.+++.. ..+ .|.
T Consensus 105 ~~~~~l~s~s-------~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 177 (447)
T 3dw8_B 105 KNAAQFLLST-------NDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT 177 (447)
T ss_dssp CSSSEEEEEE-------CSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS
T ss_pred CCcceEEEeC-------CCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC
Confidence 8 6788777 5899999998765442 122 278
Q ss_pred CCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEE-------eeCCCCCeeEEEeecCCC-CeEEEeeccCCeEEEE
Q psy3710 100 APVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVF-------ETNPNPKGLCVLCPNSNN-SLLAFPGRKSGHVHLV 169 (424)
Q Consensus 100 ~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~l~~~~~~dg~i~i~ 169 (424)
..|.+++|+|++.++++ |+.|++||+....+.+..+ ..|. ..+.+++|+|++ .++++ |+.||.|++|
T Consensus 178 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~s-~~~dg~i~iw 254 (447)
T 3dw8_B 178 YHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELT--EVITAAEFHPNSCNTFVY-SSSKGTIRLC 254 (447)
T ss_dssp SCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCC--CCEEEEEECSSCTTEEEE-EETTSCEEEE
T ss_pred cceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccC--cceEEEEECCCCCcEEEE-EeCCCeEEEE
Confidence 89999999999987776 8999999996333444322 2333 458899999998 78887 9999999999
Q ss_pred eCCCCCCC----CcccccccC------------CeEEEEEccCCCEEEEEecCCcEEEEEECCC-cceeeEEecce----
Q psy3710 170 DLADPERP----PLDIAAHEA------------PLSCIALNQTGTRLATASYKGTLIRVFDTGS-GQKLNELRRGL---- 228 (424)
Q Consensus 170 d~~~~~~~----~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~-~~~~~~~~~~~---- 228 (424)
|++++ .. ...+..|.. .|.+++|+|++++|++++. +. |++||+++ ++++..+..+.
T Consensus 255 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~-v~iwd~~~~~~~~~~~~~~~~~~~ 331 (447)
T 3dw8_B 255 DMRAS-ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS-VKVWDLNMENRPVETYQVHEYLRS 331 (447)
T ss_dssp ETTTC-SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE-EEEEETTCCSSCSCCEESCGGGTT
T ss_pred ECcCC-ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce-EEEEeCCCCccccceeeccccccc
Confidence 99986 33 566777775 8999999999999999998 98 99999997 88887777552
Q ss_pred --------------eeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCee------------------------------
Q psy3710 229 --------------CVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD------------------------------ 264 (424)
Q Consensus 229 --------------~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~------------------------------ 264 (424)
..++++|++..+ ++|+.||.|++||+.+++.....
T Consensus 332 ~l~~~~~~~~i~~~~~~~~s~~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (447)
T 3dw8_B 332 KLCSLYENDCIFDKFECCWNGSDSVV-MTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISV 410 (447)
T ss_dssp THHHHHHTSGGGCCCCEEECTTSSEE-EEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEG
T ss_pred cccccccccccccceEEEECCCCCEE-EEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccc
Confidence 127899998887 55999999999999876531100
Q ss_pred -eccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 265 -IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 265 -~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
...+...|..++|+|++++||+++.++ +.+|..+
T Consensus 411 ~~~~~~~~i~~~~~~p~~~~la~~~~~~--~~~~~~~ 445 (447)
T 3dw8_B 411 DSLDFNKKILHTAWHPKENIIAVATTNN--LYIFQDK 445 (447)
T ss_dssp GGCCTTSCCCEEEECSSSSEEEEECSSC--EEEEECC
T ss_pred cccccCCceeEEEECCCCCEEEEEecce--eeeeccc
Confidence 012345788899999999999888887 7888654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=265.13 Aligned_cols=263 Identities=14% Similarity=0.223 Sum_probs=218.6
Q ss_pred EEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe--ecCCeEEEEecCCceEEEe---eccEEEEeecCCCcee
Q psy3710 58 EMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE--FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQL 132 (424)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~ 132 (424)
.+.++++.+++++ .|+.|++||+.+++....+. +...|.+++|+|++.++++ +|.|++||+. .++.+
T Consensus 98 ~~~~s~~~l~~~~-------~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~ 169 (401)
T 4aez_A 98 LLDWSNLNVVAVA-------LERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE-SQTKL 169 (401)
T ss_dssp CEEECTTSEEEEE-------ETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEE
T ss_pred EEeecCCCEEEEE-------CCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc-CCeEE
Confidence 3444556677776 48999999999999988777 5789999999999977765 8999999996 77788
Q ss_pred EEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEE
Q psy3710 133 HVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRV 212 (424)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~i 212 (424)
..+..|... +.+++| ++..+++ |+.||.|++||++........+.+|...|.+++|+|++++|++++.|+. |++
T Consensus 170 ~~~~~~~~~--v~~~~~--~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~-v~i 243 (401)
T 4aez_A 170 RTMAGHQAR--VGCLSW--NRHVLSS-GSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV-VQI 243 (401)
T ss_dssp EEECCCSSC--EEEEEE--ETTEEEE-EETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC-EEE
T ss_pred EEecCCCCc--eEEEEE--CCCEEEE-EcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe-EEE
Confidence 888877644 777888 4567887 9999999999999655677788899999999999999999999999999 999
Q ss_pred EECCCcceeeEEecc---eeeeeecCCCCeEEEEee--cCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEE
Q psy3710 213 FDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGR--KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATA 287 (424)
Q Consensus 213 wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 287 (424)
||+++++.+..+..+ +..++++|++..++++++ .|+.|++||+.+++. ...+ .+...|.+++|+|++++++++
T Consensus 244 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~-~~~~-~~~~~v~~~~~s~~~~~l~~~ 321 (401)
T 4aez_A 244 WDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR-VNTV-DAGSQVTSLIWSPHSKEIMST 321 (401)
T ss_dssp EETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE-EEEE-ECSSCEEEEEECSSSSEEEEE
T ss_pred ccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE-EEEE-eCCCcEEEEEECCCCCeEEEE
Confidence 999999888887644 788999999988888866 899999999998763 3333 477889999999999999995
Q ss_pred e--CCCcEEEEEECCCCceee--------------eeccCCcEEEEEeCCCcEEEEEccccccccc
Q psy3710 288 S--YKGTLIRVFDTGSGQKLN--------------ELRRDSSYLCVSSDHGTVHVFSVDEAQKINK 337 (424)
Q Consensus 288 ~--~d~~~i~iwd~~~~~~~~--------------~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 337 (424)
+ .|+. |++||+.+++... .|+|++++|++++.||.|++|++.+++.+.+
T Consensus 322 ~g~~dg~-i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 322 HGFPDNN-LSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp ECTTTCE-EEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred eecCCCc-EEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 4 8999 9999999865443 2568999999999999999999999877654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=264.76 Aligned_cols=264 Identities=16% Similarity=0.213 Sum_probs=219.2
Q ss_pred eEEEEecCCceEEEe-eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcc
Q psy3710 102 VKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD 180 (424)
Q Consensus 102 v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~ 180 (424)
++.++|++++.+.+. |++|+|||.. +++....+..+.+...|.+++|+|++++|++ |+.||.|++||+.++ +.+..
T Consensus 108 ~~~l~wS~~n~lAvgld~tV~lWd~~-tg~~~~~~~~~~~~~~V~sv~fspdg~~las-gs~Dg~v~iWd~~~~-~~~~~ 184 (420)
T 4gga_A 108 LNLVDWSSGNVLAVALDNSVYLWSAS-SGDILQLLQMEQPGEYISSVAWIKEGNYLAV-GTSSAEVQLWDVQQQ-KRLRN 184 (420)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETT-TCCEEEEEECCSTTCCEEEEEECTTSSEEEE-EETTSCEEEEETTTT-EEEEE
T ss_pred ceeEEECCCCEEEEEeCCEEEEEECC-CCCEEEEEEecCCCCcEEEEEECCCCCEEEE-EECCCeEEEEEcCCC-cEEEE
Confidence 567999988754443 9999999996 7888888877666677999999999999998 999999999999987 77788
Q ss_pred cccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcc-eeeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCC
Q psy3710 181 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ-KLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLA 256 (424)
Q Consensus 181 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~ 256 (424)
+.+|...+.+++++ +..+++++.|+. +++||..... .+..+..+ +..+.+.+++..++. ++.|+.+++||..
T Consensus 185 ~~~h~~~v~~~s~~--~~~l~sgs~d~~-i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s-~~~D~~v~i~~~~ 260 (420)
T 4gga_A 185 MTSHSARVGSLSWN--SYILSSGSRSGH-IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLAS-GGNDNLVNVWPSA 260 (420)
T ss_dssp ECCCSSCEEEEEEE--TTEEEEEETTSE-EEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE-EETTSCEEEEESS
T ss_pred EeCCCCceEEEeeC--CCEEEEEeCCCc-eeEeeecccceeeEEecccccceeeeeecCCCCeeee-eeccccceEEeec
Confidence 89999999998875 579999999999 9999998754 44555544 667788888876665 9999999999998
Q ss_pred CCCC---CCeeeccCCCCeEEEEEcCCCC-EEEE--EeCCCcEEEEEECCCCceeee-----------eccCCcEEEEEe
Q psy3710 257 DPER---PPLDIAAHEAPLSCIALNQTGT-RLAT--ASYKGTLIRVFDTGSGQKLNE-----------LRRDSSYLCVSS 319 (424)
Q Consensus 257 ~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~--~~~d~~~i~iwd~~~~~~~~~-----------~~~~~~~l~~~~ 319 (424)
.++. .......|...|.+++|+|++. .+++ |+.|+. |++||+.+++++.. +.++++.+++++
T Consensus 261 ~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~-I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~s 339 (420)
T 4gga_A 261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH 339 (420)
T ss_dssp CCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE-EEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred cccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE-EEEEeCCccccceeeccccceeeeeecCCCCeEEEEE
Confidence 7653 3455678999999999999654 5554 457999 99999999988775 457888887765
Q ss_pred --CCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecC
Q psy3710 320 --DHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 320 --~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~ 395 (424)
.|+.|+|||+.+++++. .+..|.+.|+.++|+|||++|++|+.||+|++|++.+
T Consensus 340 g~~d~~I~iwd~~~~~~v~----------------------~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 340 GFAQNQLVIWKYPTMAKVA----------------------ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp CTTTCCEEEEETTTCCEEE----------------------EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred ecCCCEEEEEECCCCcEEE----------------------EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 78999999999877643 3556778899999999999999999999999999974
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=264.64 Aligned_cols=275 Identities=16% Similarity=0.248 Sum_probs=211.7
Q ss_pred ccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe--eccEEEE
Q psy3710 47 QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL--EGLIKVY 123 (424)
Q Consensus 47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~--~~~i~v~ 123 (424)
...|...+.. ++.++++++++++ .|++|++||+.+++.+..+. |.+.|.+++|+|++.++.. |+.|++|
T Consensus 117 l~~h~~~v~~-~~~~~~~~l~sgs-------~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 117 LRGHMTSVIT-CLQFEDNYVITGA-------DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVW 188 (464)
T ss_dssp EECCSSSCEE-EEEEETTEEEEEE-------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEE
T ss_pred EcCCCCCcEE-EEEECCCEEEEEc-------CCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEE
Confidence 4456665422 4555788888888 68999999999999999998 8999999999999854444 8999999
Q ss_pred eecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCC----------------------Cccc
Q psy3710 124 TFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERP----------------------PLDI 181 (424)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~----------------------~~~~ 181 (424)
|+. +++.+..+..|........+.+.+++.++++ |+.||.|++||+.+.... ...+
T Consensus 189 d~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s-~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 189 DIK-KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT-GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp ETT-TTEEEEEECCCSSCEEEEEEEESSSCEEEEE-EETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred ECC-CCcEEEEECCCCCccEEEEEecCCCCCEEEE-EcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence 997 7788888888876643334444478888888 999999999999875322 2234
Q ss_pred ccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCC
Q psy3710 182 AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERP 261 (424)
Q Consensus 182 ~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~ 261 (424)
.+|...+.++ +++++++++++.|+. |++||+++++.+..
T Consensus 267 ~~~~~~v~~~--~~~~~~l~~~~~d~~-i~vwd~~~~~~~~~-------------------------------------- 305 (464)
T 3v7d_B 267 RGHMASVRTV--SGHGNIVVSGSYDNT-LIVWDVAQMKCLYI-------------------------------------- 305 (464)
T ss_dssp CCCSSCEEEE--EEETTEEEEEETTSC-EEEEETTTTEEEEE--------------------------------------
T ss_pred cCccceEEEE--cCCCCEEEEEeCCCe-EEEEECCCCcEEEE--------------------------------------
Confidence 4555555555 345566666666666 66666665554333
Q ss_pred CeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec----------cCCcEEEEEeCCCcEEEEEccc
Q psy3710 262 PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR----------RDSSYLCVSSDHGTVHVFSVDE 331 (424)
Q Consensus 262 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~----------~~~~~l~~~~~d~~i~iw~~~~ 331 (424)
+.+|...|.+++|+|+++++++++.|+. |++||+++++++.++. .++++|++++.||.|++||+.+
T Consensus 306 ---~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 306 ---LSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp ---ECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred ---ecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 3378899999999999999999999999 9999999999888764 3578999999999999999988
Q ss_pred cccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCCcceee
Q psy3710 332 AQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWR 401 (424)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~~~ 401 (424)
++.... ..+...+..++|+|++++|++++ ||.|++|++. ++++++
T Consensus 382 ~~~~~~-----------------------~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~-~g~~~~ 426 (464)
T 3v7d_B 382 YSRKFS-----------------------YHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLR-SGKLVH 426 (464)
T ss_dssp CCEEEE-----------------------EECTTCCCEEEEEECSSEEEEEE-TTEEEEEETT-TCCEEE
T ss_pred Cceeee-----------------------ecCCCCccEEEEEeCCCEEEEec-CCeEEEEECC-CCcEEe
Confidence 653211 11345567889999999999988 9999999998 566655
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=262.00 Aligned_cols=246 Identities=13% Similarity=0.137 Sum_probs=191.0
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcc--cccccccCCCeeeEEEecc--CceEEEEeCCcCCCcCCC
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKE--KERQDFTDGGLGHVEMLFR--CNYLALVGGGTHPKYPNN 80 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~~~~~d~ 80 (424)
+.+|.+.|++++|+|+|++||+|+.|+ |+|||+.+++. ......|.+.|.+++|+++ ++.+++++ .|+
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s-------~D~ 81 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCS-------YDR 81 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEE-------TTS
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEE-------CCC
Confidence 679999999999999999999999988 99999987653 3445678999999999864 78888888 689
Q ss_pred eEEEEECCCCc--EEEEEe-ecCCeEEEEecCC--ceEEEe---eccEEEEeecCCCce--eEEEeeCCCCCeeEEEeec
Q psy3710 81 RVMIWDDLKKQ--VVICLE-FNAPVKGVRLRRD--KIVVVL---EGLIKVYTFIQCPQQ--LHVFETNPNPKGLCVLCPN 150 (424)
Q Consensus 81 ~i~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~---~~~i~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 150 (424)
+|++||+++++ ....+. |...|.+++|+|+ +.++++ |+.|++|+++..... ...+..|. ..+.+++|+
T Consensus 82 ~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~--~~v~~~~~~ 159 (316)
T 3bg1_A 82 KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT--IGCNAVSWA 159 (316)
T ss_dssp CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSS--SCBCCCEEC
T ss_pred EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecccc--CCcceEEEc
Confidence 99999998874 555555 8899999999997 655554 899999999632221 22333444 346667787
Q ss_pred CC-----------------CCeEEEeeccCCeEEEEeCCCCC--CCCcccccccCCeEEEEEccCC----CEEEEEecCC
Q psy3710 151 SN-----------------NSLLAFPGRKSGHVHLVDLADPE--RPPLDIAAHEAPLSCIALNQTG----TRLATASYKG 207 (424)
Q Consensus 151 ~~-----------------~~~l~~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~ 207 (424)
|+ +++|++ |+.|+.|++||++... .....+.+|...|.+++|+|++ ++|++++.|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~l~s-gs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~ 238 (316)
T 3bg1_A 160 PAVVPGSLIDHPSGQKPNYIKRFAS-GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG 238 (316)
T ss_dssp CCCCC------CCSCCCCCCCBEEC-CBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC
T ss_pred cccCCccccccccccCccccceEEE-ecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC
Confidence 76 367777 9999999999997532 2455788999999999999986 7899999999
Q ss_pred cEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEE
Q psy3710 208 TLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATA 287 (424)
Q Consensus 208 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 287 (424)
+ |++||+++.... ......+..|...|.+++|+|++++|+++
T Consensus 239 ~-v~iw~~~~~~~~-------------------------------------~~~~~~~~~~~~~v~~v~~sp~g~~las~ 280 (316)
T 3bg1_A 239 R-VFIWTCDDASSN-------------------------------------TWSPKLLHKFNDVVWHVSWSITANILAVS 280 (316)
T ss_dssp E-EEEEECSSTTCC-------------------------------------CCBCCEEEECSSCEEEEEECTTTCCEEEE
T ss_pred e-EEEEEccCcccc-------------------------------------chhhhhhhcCCCcEEEEEEcCCCCEEEEE
Confidence 9 999998753210 00011223678899999999999999999
Q ss_pred eCCCcEEEEEECC
Q psy3710 288 SYKGTLIRVFDTG 300 (424)
Q Consensus 288 ~~d~~~i~iwd~~ 300 (424)
+.|+. |++|+..
T Consensus 281 ~~D~~-v~lw~~~ 292 (316)
T 3bg1_A 281 GGDNK-VTLWKES 292 (316)
T ss_dssp ESSSC-EEEEEEC
T ss_pred cCCCe-EEEEEEC
Confidence 99999 9999976
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=264.53 Aligned_cols=291 Identities=16% Similarity=0.267 Sum_probs=233.7
Q ss_pred ccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe-eccEEEEe
Q psy3710 47 QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL-EGLIKVYT 124 (424)
Q Consensus 47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-~~~i~v~~ 124 (424)
...|.+.+.. ++.++++++++++ .|++|++||+.+++.+..+. |...|.+++++++..+.++ |+.|++||
T Consensus 114 l~~h~~~v~~-~~~~~g~~l~sg~-------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 114 LKGHDDHVIT-CLQFCGNRIVSGS-------DDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWN 185 (445)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEE-------TTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred ecccCCCcEE-EEEEcCCEEEEEE-------CCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEE
Confidence 4456665432 4667899999888 68999999999999999888 8999999999966444444 89999999
Q ss_pred ecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEe
Q psy3710 125 FIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS 204 (424)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 204 (424)
+. +++.+..+..|... +.++.++ ++.+++ |+.||.|++||+.++ +....+.+|...|.+++| +++++++++
T Consensus 186 ~~-~~~~~~~~~~h~~~--v~~~~~~--~~~l~s-~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~ 256 (445)
T 2ovr_B 186 AE-TGECIHTLYGHTST--VRCMHLH--EKRVVS-GSRDATLRVWDIETG-QCLHVLMGHVAAVRCVQY--DGRRVVSGA 256 (445)
T ss_dssp TT-TTEEEEEECCCSSC--EEEEEEE--TTEEEE-EETTSEEEEEESSSC-CEEEEEECCSSCEEEEEE--CSSCEEEEE
T ss_pred CC-cCcEEEEECCCCCc--EEEEEec--CCEEEE-EeCCCEEEEEECCCC-cEEEEEcCCcccEEEEEE--CCCEEEEEc
Confidence 96 77888888877654 7777774 567777 999999999999986 677788899999999998 678999999
Q ss_pred cCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEE
Q psy3710 205 YKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRL 284 (424)
Q Consensus 205 ~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 284 (424)
.|+. |++||+++++.+..+. +|...|.+++| ++.++
T Consensus 257 ~dg~-i~iwd~~~~~~~~~~~-----------------------------------------~~~~~v~~~~~--~~~~l 292 (445)
T 2ovr_B 257 YDFM-VKVWDPETETCLHTLQ-----------------------------------------GHTNRVYSLQF--DGIHV 292 (445)
T ss_dssp TTSC-EEEEEGGGTEEEEEEC-----------------------------------------CCSSCEEEEEE--CSSEE
T ss_pred CCCE-EEEEECCCCcEeEEec-----------------------------------------CCCCceEEEEE--CCCEE
Confidence 9999 9999998876654443 67888999998 78899
Q ss_pred EEEeCCCcEEEEEECCCCceeeeec----------cCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCC
Q psy3710 285 ATASYKGTLIRVFDTGSGQKLNELR----------RDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSS 354 (424)
Q Consensus 285 ~~~~~d~~~i~iwd~~~~~~~~~~~----------~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (424)
++++.|+. |++||+++++.+..+. ++++++++++.||.|++||+.+++.+......
T Consensus 293 ~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------- 358 (445)
T 2ovr_B 293 VSGSLDTS-IRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGP------------- 358 (445)
T ss_dssp EEEETTSC-EEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECST-------------
T ss_pred EEEeCCCe-EEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccC-------------
Confidence 99999999 9999999998877653 46789999999999999999987765432210
Q ss_pred ceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCCcceeeee----------ehhhheecCCCceeeEEE
Q psy3710 355 WSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWRDV----------YIQFLEMTNDSNLLSCIE 421 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~~~~~----------~~~~~~~~~d~~~l~~~~ 421 (424)
..|...+..++|+ +++|++++.||.|++|++. .++.++.. ....+.++|++.+++++.
T Consensus 359 ------~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~ 426 (445)
T 2ovr_B 359 ------NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK-TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 426 (445)
T ss_dssp ------TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT-TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEEC
T ss_pred ------CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECC-CCceeeeeeccccCCCCceEEEEEecCCEEEEEEcc
Confidence 0144567777774 6899999999999999998 55555433 244678999999998864
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=250.79 Aligned_cols=266 Identities=17% Similarity=0.216 Sum_probs=217.4
Q ss_pred cEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeE
Q psy3710 91 QVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHV 166 (424)
Q Consensus 91 ~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i 166 (424)
+....+. |.+.|.+++| +++..+++ ||.|++||+. ..+....+..+.. .+.+++|+|+++++++ |+.||.|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~-~~~dg~i 83 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKD-DQWLGTVVYTGQG--FLNSVCYDSEKELLLF-GGKDTMI 83 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEES-SSEEEEEEEECSS--CEEEEEEETTTTEEEE-EETTSCE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECC-CCEEEEEeecCCc--cEEEEEECCCCCEEEE-ecCCCeE
Confidence 5566676 8999999999 77655554 8999999996 7777777777764 4889999999999998 9999999
Q ss_pred EEEeCCCCC--CCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEE
Q psy3710 167 HLVDLADPE--RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLA 241 (424)
Q Consensus 167 ~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 241 (424)
++|++.... +....+.+|...|.+++| +++++++++.|+. |++|| .++....+..+ +..+++.|.....+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~-i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKT-AKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp EEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSE-EEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred EEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCC-EEEEc--CCcEEEecccCCCceeEEEEccCCCCEE
Confidence 999987652 446678899999999999 5689999999999 99999 55666666543 66778888555556
Q ss_pred EEeecCCeEEEEeCCCCCCCCeeecc-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeee------------
Q psy3710 242 FPGRKSGHVHLVDLADPERPPLDIAA-HEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNEL------------ 308 (424)
Q Consensus 242 ~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~------------ 308 (424)
++++.||.|++||... ....+.. |...+.+++|+|++. +++++.|+. |++||+++++.+..+
T Consensus 159 ~~~~~d~~i~i~d~~~---~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~i~~~~~ 233 (313)
T 3odt_A 159 LTASADKTIKLWQNDK---VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGL-IKLVDMHTGDVLRTYEGHESFVYCIKL 233 (313)
T ss_dssp EEEETTSCEEEEETTE---EEEEECSSCSSCEEEEEEEETTE-EEEEETTSE-EEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EEEECCCCEEEEecCc---eEEEEeccCcccEEEEEEcCCCe-EEEccCCCe-EEEEECCchhhhhhhhcCCceEEEEEE
Confidence 6699999999999432 3344444 899999999999998 999999999 999999999887754
Q ss_pred ccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcE
Q psy3710 309 RRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSY 388 (424)
Q Consensus 309 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v 388 (424)
+|++ .+++++.||.|++||+.+++.+. .+..|..++..++|+|+++ +++++.||.|
T Consensus 234 ~~~~-~l~~~~~dg~v~iwd~~~~~~~~----------------------~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i 289 (313)
T 3odt_A 234 LPNG-DIVSCGEDRTVRIWSKENGSLKQ----------------------VITLPAISIWSVDCMSNGD-IIVGSSDNLV 289 (313)
T ss_dssp CTTS-CEEEEETTSEEEEECTTTCCEEE----------------------EEECSSSCEEEEEECTTSC-EEEEETTSCE
T ss_pred ecCC-CEEEEecCCEEEEEECCCCceeE----------------------EEeccCceEEEEEEccCCC-EEEEeCCCcE
Confidence 4677 68999999999999999876533 2445667899999999998 6679999999
Q ss_pred EEEEecC
Q psy3710 389 YKFMFNS 395 (424)
Q Consensus 389 ~~~~~~~ 395 (424)
++|++..
T Consensus 290 ~iw~~~~ 296 (313)
T 3odt_A 290 RIFSQEK 296 (313)
T ss_dssp EEEESCG
T ss_pred EEEeCCC
Confidence 9999973
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=251.65 Aligned_cols=265 Identities=15% Similarity=0.221 Sum_probs=215.4
Q ss_pred eeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe---ecCCeEEEEecCCceEEEe---eccEEEEeecC
Q psy3710 54 LGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE---FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQ 127 (424)
Q Consensus 54 i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~ 127 (424)
...++|++++ .|+++. |++|+|||+.+++.++.+. |...|.+++|+|++.++++ |+.|++|+++
T Consensus 28 ~~~l~WS~~~-~lAvg~--------D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~- 97 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL--------DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ- 97 (318)
T ss_dssp CBCEEECTTS-EEEEEE--------TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETT-
T ss_pred ceEEEECCCC-EEEEEe--------CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecC-
Confidence 3568999775 555443 8999999999999998876 5678999999999988776 8999999997
Q ss_pred CCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCC
Q psy3710 128 CPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKG 207 (424)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 207 (424)
+++.+..+..|... +.++. +++..+++ |+.++.+++|+.......+..+.+|...+..+.++++++++++++.|+
T Consensus 98 ~~~~~~~~~~h~~~--~~~~~--~~~~~l~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 172 (318)
T 4ggc_A 98 QQKRLRNMTSHSAR--VGSLS--WNSYILSS-GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN 172 (318)
T ss_dssp TTEEEEEEECCSSC--EEEEE--EETTEEEE-EETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CceeEEEecCccce--EEEee--cCCCEEEE-EecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCc
Confidence 78888888887744 44444 45677887 999999999999887666778889999999999999999999999999
Q ss_pred cEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCE---E
Q psy3710 208 TLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTR---L 284 (424)
Q Consensus 208 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---l 284 (424)
. |++||+++++.... .......|...|.+++++|++.. +
T Consensus 173 ~-i~iwd~~~~~~~~~-------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~ 214 (318)
T 4ggc_A 173 L-VNVWPSAPGEGGWV-------------------------------------PLQTFTQHQGAVKAVAWCPWQSNVLAT 214 (318)
T ss_dssp C-EEEEESSCBTTBSC-------------------------------------CSEEECCCCSCEEEEEECTTSTTEEEE
T ss_pred c-eeEEECCCCccccc-------------------------------------ceeeecccCCceEEEEecCCCCcEEEE
Confidence 9 99999987653221 12223367788999999987653 3
Q ss_pred EEEeCCCcEEEEEECCCCceeee-----------eccCCcEEEEEe--CCCcEEEEEccccccccccccceeeeccCccc
Q psy3710 285 ATASYKGTLIRVFDTGSGQKLNE-----------LRRDSSYLCVSS--DHGTVHVFSVDEAQKINKQSSLASASFLPKYF 351 (424)
Q Consensus 285 ~~~~~d~~~i~iwd~~~~~~~~~-----------~~~~~~~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 351 (424)
++++.++. |++||......... +.++++.+++++ .|+.|+|||+.+++++..
T Consensus 215 ~~~~~~~~-i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~-------------- 279 (318)
T 4ggc_A 215 GGGTSDRH-IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE-------------- 279 (318)
T ss_dssp EECTTTCE-EEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE--------------
T ss_pred EecCCCCE-EEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEE--------------
Confidence 46677888 99999988776553 457777777654 799999999998776433
Q ss_pred cCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 352 SSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
+..|.+.|+.++|+||+++|++|+.||+|++|++.
T Consensus 280 --------l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 280 --------LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp --------ECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred --------EcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 45677889999999999999999999999999986
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=268.79 Aligned_cols=240 Identities=10% Similarity=0.073 Sum_probs=189.4
Q ss_pred ccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCC--cEEEEEe-ecCCeEEEEecCCceEEEe---eccE
Q psy3710 47 QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKK--QVVICLE-FNAPVKGVRLRRDKIVVVL---EGLI 120 (424)
Q Consensus 47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i 120 (424)
+..+.+.|.+++|+|+++++++++ .|+.|++||+.++ +.+..+. |...|.+++|+|++.++++ |+.|
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~-------~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v 79 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTT-------ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNA 79 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCC-------SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSE
T ss_pred EecCCCcEEEEEECCCCCEEEEec-------CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeE
Confidence 344578899999999999998876 5899999999988 5666666 8899999999999877765 8999
Q ss_pred EEEeecCCCc---eeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCC--CCccccc-ccCCeEEEEEc
Q psy3710 121 KVYTFIQCPQ---QLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER--PPLDIAA-HEAPLSCIALN 194 (424)
Q Consensus 121 ~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~--~~~~~~~-~~~~v~~~~~~ 194 (424)
++||+. .++ ....+..|. ..+.+++|+|++++|++ |+.|+.|++||++.+.. ....+.. |...|.+++|+
T Consensus 80 ~vwd~~-~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~ 155 (377)
T 3dwl_C 80 YVYEKR-PDGTWKQTLVLLRLN--RAATFVRWSPNEDKFAV-GSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWH 155 (377)
T ss_dssp EEC-------CCCCEEECCCCS--SCEEEEECCTTSSCCEE-EESSSCEEECCC-----CCCCEEECSSCCSCEEEEEEC
T ss_pred EEEEcC-CCCceeeeeEecccC--CceEEEEECCCCCEEEE-EecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEc
Confidence 999997 444 444455554 55899999999999998 99999999999998632 4566777 99999999999
Q ss_pred cCCCEEEEEecCCcEEEEEECCC------------------cceeeEEe--cceeeeeecCCCCeEEEEeecCCeEEEEe
Q psy3710 195 QTGTRLATASYKGTLIRVFDTGS------------------GQKLNELR--RGLCVLCPNSNNSLLAFPGRKSGHVHLVD 254 (424)
Q Consensus 195 ~~~~~l~~~~~d~~~i~iwd~~~------------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~dg~i~i~d 254 (424)
|++++|++++.|+. |++||++. ++++..+. ..+..++++|++..++. ++.||.|++||
T Consensus 156 ~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~i~iwd 233 (377)
T 3dwl_C 156 PNNVLLAAGCADRK-AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAY-AGHDSSVTIAY 233 (377)
T ss_dssp TTSSEEEEEESSSC-EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEE-EETTTEEC-CE
T ss_pred CCCCEEEEEeCCCE-EEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEE-EeCCCcEEEEE
Confidence 99999999999999 99999852 34444441 22778899999886665 89999999999
Q ss_pred CCCCCCC---CeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCC
Q psy3710 255 LADPERP---PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 255 ~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~ 301 (424)
+.+++.+ ...+..|..+|.+++|+|++++|++++.++. .+|+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~--~~~~~~~ 281 (377)
T 3dwl_C 234 PSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSP--ILLQGNE 281 (377)
T ss_dssp ECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSE--EEECCCC
T ss_pred CCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcE--EEEEeCC
Confidence 9988753 5567799999999999999999999987774 5777653
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=259.59 Aligned_cols=291 Identities=13% Similarity=0.166 Sum_probs=208.8
Q ss_pred cccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcc----cccccccCCCeeeEEEec--cCceEEEEeCCcCCCc
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKE----KERQDFTDGGLGHVEMLF--RCNYLALVGGGTHPKY 77 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~----~~~~~~~~~~i~~~~~~~--~~~~l~~~~~~~~~~~ 77 (424)
.+.+|.+.|++++|+|++++||+|+.++ |++||+.+... ......|.+.|.+++|+| +++++++++
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~------- 78 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS------- 78 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE-------
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEc-------
Confidence 3789999999999999999999999988 99999987643 333456899999999999 588888888
Q ss_pred CCCeEEEEECCCC---------cEEEEEe-ecCCeEEEEecCC--ceEEEe---eccEEEEeecCCCceeEEEe------
Q psy3710 78 PNNRVMIWDDLKK---------QVVICLE-FNAPVKGVRLRRD--KIVVVL---EGLIKVYTFIQCPQQLHVFE------ 136 (424)
Q Consensus 78 ~d~~i~iwd~~~~---------~~~~~~~-~~~~v~~~~~~~~--~~~~~~---~~~i~v~~~~~~~~~~~~~~------ 136 (424)
.|+.|++||+.++ +.+..+. |...|.+++|+|+ +.++++ |+.|++||++ ..+.+..+.
T Consensus 79 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~~ 157 (351)
T 3f3f_A 79 YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL-EPSDLRSWTLTSEMK 157 (351)
T ss_dssp TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS-STTCTTCCEEEEEEE
T ss_pred CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC-ChHHhcccccccccc
Confidence 6899999999887 4566665 7899999999998 766654 8999999996 443332221
Q ss_pred -----eCCCCCeeEEEeecCC---CCeEEEeeccCCeEEEEeCCCCCCC--CcccccccCCeEEEEEccCC----CEEEE
Q psy3710 137 -----TNPNPKGLCVLCPNSN---NSLLAFPGRKSGHVHLVDLADPERP--PLDIAAHEAPLSCIALNQTG----TRLAT 202 (424)
Q Consensus 137 -----~~~~~~~~~~~~~~~~---~~~l~~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~----~~l~~ 202 (424)
.......+.++.++|+ +..+++ ++.++.+.+|+...+ .. ...+.+|...|.+++|+|++ ++|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAV-SALEQAIIYQRGKDG-KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp SCSCCCSSCSCCCEEEEECCCSSSCCEEEE-EETTEEEEEEECTTS-CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred ccccccCCcccceeEEEeccCCCCCcEEEE-ecCCCcEEEEccCCC-ceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Confidence 1123345788999997 888887 999999988887764 32 55677899999999999998 89999
Q ss_pred EecCCcEEEEEECCCcceeeEEecceee---eeecCCCCeEEE---EeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEE
Q psy3710 203 ASYKGTLIRVFDTGSGQKLNELRRGLCV---LCPNSNNSLLAF---PGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIA 276 (424)
Q Consensus 203 ~~~d~~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 276 (424)
++.|+. |++||++.+............ ....+....... .+.....+.+|+....+ ....+.+|...|++++
T Consensus 236 ~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~ 313 (351)
T 3f3f_A 236 GCKDGR-IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVE-LLSEHDDHNGEVWSVS 313 (351)
T ss_dssp EETTSC-EEEEEEEECC---------------------------------------CCSEEEE-EEEEECTTSSCEEEEE
T ss_pred EcCCCe-EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccccc-EEEEEecccccEEEEE
Confidence 999999 999999877554443332211 111111111111 12223334444433322 3455678999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEECCCCceeeee
Q psy3710 277 LNQTGTRLATASYKGTLIRVFDTGSGQKLNEL 308 (424)
Q Consensus 277 ~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~ 308 (424)
|+|++++|++++.||. |++|++.+++.+..+
T Consensus 314 ~s~~~~~l~s~~~dg~-v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 314 WNLTGTILSSAGDDGK-VRLWKATYSNEFKCM 344 (351)
T ss_dssp ECSSSCCEEEEETTSC-EEEEEECTTSCEEEE
T ss_pred EcCCCCEEEEecCCCc-EEEEecCcCcchhhe
Confidence 9999999999999999 999999988665543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=247.82 Aligned_cols=242 Identities=14% Similarity=0.206 Sum_probs=191.2
Q ss_pred EEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCC-CCCCcccccccCCeEEEEEcc--CCCEEEEEecCCcEE
Q psy3710 134 VFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADP-ERPPLDIAAHEAPLSCIALNQ--TGTRLATASYKGTLI 210 (424)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~~i 210 (424)
.+.+|. ..+.+++|+|++++|++ |+.|+.|++||+... .+.+..+.+|.++|.+++|+| ++++|++++.|++ |
T Consensus 4 ~~~~h~--~~V~~~~~s~~g~~las-~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~-v 79 (297)
T 2pm7_B 4 IANAHN--EMIHDAVMDYYGKRMAT-CSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK-V 79 (297)
T ss_dssp ECCSCS--SCEEEEEECTTSSEEEE-EETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE-E
T ss_pred eccCCc--CceEEEEECCCCCEEEE-EeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE-E
Confidence 344555 44889999999999998 999999999999753 256778899999999999986 3899999999999 9
Q ss_pred EEEECCCcc--eeeEEec---ceeeeeecCCC-CeEEEEeecCCeEEEEeCCCCCC-CCeeeccCCCCeEEEEEcCC---
Q psy3710 211 RVFDTGSGQ--KLNELRR---GLCVLCPNSNN-SLLAFPGRKSGHVHLVDLADPER-PPLDIAAHEAPLSCIALNQT--- 280 (424)
Q Consensus 211 ~iwd~~~~~--~~~~~~~---~~~~~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~--- 280 (424)
++||+++++ .+..+.. .+..++++|+. ..++++++.|+.|++||+++... ....+.+|...|.+++|+|+
T Consensus 80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (297)
T ss_dssp EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--
T ss_pred EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccc
Confidence 999998874 4444543 37889999973 45566799999999999987642 24566799999999999997
Q ss_pred ----------CCEEEEEeCCCcEEEEEECCCCc----eee------------eeccC---CcEEEEEeCCCcEEEEEccc
Q psy3710 281 ----------GTRLATASYKGTLIRVFDTGSGQ----KLN------------ELRRD---SSYLCVSSDHGTVHVFSVDE 331 (424)
Q Consensus 281 ----------~~~l~~~~~d~~~i~iwd~~~~~----~~~------------~~~~~---~~~l~~~~~d~~i~iw~~~~ 331 (424)
+++|++++.|+. |++||+++++ ... .|+|+ +.+|++++.|++|+|||+.+
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~-v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ----------CCEEEEEETTSC-EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ccccCCCCCCcceEEEEcCCCc-EEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 579999999999 9999998765 332 25677 48999999999999999977
Q ss_pred cccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCCc
Q psy3710 332 AQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKG 397 (424)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~ 397 (424)
......... .. ...+...+..++|+|++++|++++.||.|++|+....+
T Consensus 239 ~~~~~~~~~------~~-----------~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 239 EQGPWKKTL------LK-----------EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (297)
T ss_dssp TTSCCEEEE------SS-----------SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred CCCccceee------ee-----------cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCC
Confidence 431100000 00 01234678899999999999999999999999987554
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=274.40 Aligned_cols=278 Identities=10% Similarity=0.083 Sum_probs=207.2
Q ss_pred ccccCCceEEEEECCC------CCeeEeecCCe-EEEEeCCcCccc-----------ccccccCCCeeeEEEeccCceEE
Q psy3710 6 SSTYKNGLLYAGFNQD------QGCFACGMEDG-FRIYNCDPLKEK-----------ERQDFTDGGLGHVEMLFRCNYLA 67 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~------g~~la~g~~~~-i~iw~~~~~~~~-----------~~~~~~~~~i~~~~~~~~~~~l~ 67 (424)
+.+|.+.|.+++|+|+ +.+||+++.|+ |+|||+..+... .....|.+.+.+++|+++ +.|+
T Consensus 203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~la 281 (524)
T 2j04_B 203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVV 281 (524)
T ss_dssp EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEE
T ss_pred EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEE
Confidence 4577899999999997 57999999998 999999766421 123457889999999976 4676
Q ss_pred EEeCCcCCCcCCCeEEEEECCCCc-EEEEEe-ecCCeEEE--EecCCc-eEEEe---eccEEEEeecCCCceeEEEeeCC
Q psy3710 68 LVGGGTHPKYPNNRVMIWDDLKKQ-VVICLE-FNAPVKGV--RLRRDK-IVVVL---EGLIKVYTFIQCPQQLHVFETNP 139 (424)
Q Consensus 68 ~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~-~~~~v~~~--~~~~~~-~~~~~---~~~i~v~~~~~~~~~~~~~~~~~ 139 (424)
+++ .|++|++||+++++ ....+. |...|.++ .|+|++ .++++ |++|++||++ +.+....+..+.
T Consensus 282 sgs-------~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~-~~~~~~~~~~~~ 353 (524)
T 2j04_B 282 CGF-------KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK-DIATTKTTVSRF 353 (524)
T ss_dssp EEE-------TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGG-GHHHHCEEEEEC
T ss_pred EEe-------CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECC-CCCccccccccc
Confidence 666 58999999998764 344455 88999999 578887 66665 9999999997 666666666655
Q ss_pred CCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcc
Q psy3710 140 NPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ 219 (424)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~ 219 (424)
....+.+++|+|+++.+++ ++.|++|++||++++ .....+.+|.+.|.+++|+|+|+.|++|+.|++ |++||+...
T Consensus 354 ~~~~v~~v~fsp~~~~l~s-~~~d~tv~lwd~~~~-~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt-v~lwd~~~~- 429 (524)
T 2j04_B 354 RGSNLVPVVYCPQIYSYIY-SDGASSLRAVPSRAA-FAVHPLVSRETTITAIGVSRLHPMVLAGSADGS-LIITNAARR- 429 (524)
T ss_dssp SCCSCCCEEEETTTTEEEE-ECSSSEEEEEETTCT-TCCEEEEECSSCEEEEECCSSCCBCEEEETTTE-EECCBSCSS-
T ss_pred ccCcccceEeCCCcCeEEE-eCCCCcEEEEECccc-ccceeeecCCCceEEEEeCCCCCeEEEEECCCE-EEEEechHh-
Confidence 3333667899999999887 899999999999986 666778899999999999999999999999999 999998654
Q ss_pred eeeEEec--------ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCC---EEEEEe
Q psy3710 220 KLNELRR--------GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT---RLATAS 288 (424)
Q Consensus 220 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~ 288 (424)
.+...+. .+..++++|+++.+.+ .. ...+|+..........+.+|...|.+++|+|++. .+|+|+
T Consensus 430 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~--~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~ 505 (524)
T 2j04_B 430 LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI--DS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSN 505 (524)
T ss_dssp TTTCC------CCCCEEEECBCCSSSCEEEE--CC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEEC
T ss_pred hccccccCccceeeeEEEEeccCCCCCeEEc--cC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhc
Confidence 2222111 1346788888874422 22 2233333211224556779999999999999954 999999
Q ss_pred CCCcEEEEEECCC
Q psy3710 289 YKGTLIRVFDTGS 301 (424)
Q Consensus 289 ~d~~~i~iwd~~~ 301 (424)
.+|. |+||+++-
T Consensus 506 ~~g~-vrlw~l~~ 517 (524)
T 2j04_B 506 SAGL-LTLEYLSL 517 (524)
T ss_dssp TTSE-EEEEECSC
T ss_pred cCce-EEEEEccc
Confidence 9999 99999864
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=262.99 Aligned_cols=274 Identities=15% Similarity=0.228 Sum_probs=221.1
Q ss_pred cccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEE
Q psy3710 7 STYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIW 85 (424)
Q Consensus 7 ~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iw 85 (424)
.+|...|.|++| ++++|++|+.++ |++||+.+++.......|.+.|.++++ +++.+++++ .|++|++|
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~-------~dg~i~vw 198 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGS-------SDSTVRVW 198 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEE-------TTSCEEEE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEc-------CCCeEEEE
Confidence 467788999887 788999999998 999999999887777788999988877 788888887 68999999
Q ss_pred ECCCCcEEEEEe-ecCCeEEEEecCCceEEEe-eccEEEEeecCCCcee---EEEeeCCCCCeeEEEeecCCCCeEEEee
Q psy3710 86 DDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQL---HVFETNPNPKGLCVLCPNSNNSLLAFPG 160 (424)
Q Consensus 86 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (424)
|+.+++.+..+. |...|.+++|+++..+.++ |+.|++||+. ..... ..+..|. ..+.++.+ +++++++ |
T Consensus 199 d~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~s-~ 272 (435)
T 1p22_A 199 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA-SPTDITLRRVLVGHR--AAVNVVDF--DDKYIVS-A 272 (435)
T ss_dssp ESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECS-SSSCCEEEEEECCCS--SCEEEEEE--ETTEEEE-E
T ss_pred ECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCC-CCCCceeeeEecCCC--CcEEEEEe--CCCEEEE-E
Confidence 999999999888 8899999999876544444 8999999997 44433 4455555 44777777 6788888 9
Q ss_pred ccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecCCC
Q psy3710 161 RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNN 237 (424)
Q Consensus 161 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~ 237 (424)
+.||.|++||++++ +.+..+.+|...|.+++|+ ++++++++.|+. |++||+++++++..+..+ +..+++ ++
T Consensus 273 ~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~ 346 (435)
T 1p22_A 273 SGDRTIKVWNTSTC-EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT-IRLWDIECGACLRVLEGHEELVRCIRF--DN 346 (435)
T ss_dssp ETTSEEEEEETTTC-CEEEEEECCSSCEEEEEEE--TTEEEEEETTSC-EEEEETTTCCEEEEECCCSSCEEEEEC--CS
T ss_pred eCCCeEEEEECCcC-cEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCe-EEEEECCCCCEEEEEeCCcCcEEEEEe--cC
Confidence 99999999999986 7778889999999999994 689999999999 999999999999888865 444455 44
Q ss_pred CeEEEEeecCCeEEEEeCCCCCC--------CCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeee
Q psy3710 238 SLLAFPGRKSGHVHLVDLADPER--------PPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE 307 (424)
Q Consensus 238 ~~~~~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~ 307 (424)
..+++|+.||.|++||+.++.. ....+.+|...|.+++| ++++|++++.||. |++||+.+......
T Consensus 347 -~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~-i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 347 -KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDT-ILIWDFLNDPAAQA 420 (435)
T ss_dssp -SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSE-EEEEC---------
T ss_pred -CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCE-EEEEECCCCCCccc
Confidence 4566699999999999976542 34566789999999999 6788999999999 99999987665443
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=272.73 Aligned_cols=297 Identities=11% Similarity=0.068 Sum_probs=233.1
Q ss_pred CCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEeeccEEEEeecCCCc
Q psy3710 51 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQ 130 (424)
Q Consensus 51 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~~~~~~~ 130 (424)
...+.+++|+|||..+|+++ .|++|+ |.+.++.+. .|+..|.+++|+|++ .++.+.+|+.+ +.
T Consensus 15 ~~~v~sv~~SpDG~~iASas-------~D~TV~--d~~~~~~l~--gh~~~v~~V~FsPdg----~~~~~~~~~~~--~~ 77 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTF-------PDISIG--QPKYAKDIN--CNSKNLFHVKEFPLE----FENKLDFELAQ--QN 77 (588)
T ss_dssp SSSSCCEEECTTSCEEEECS-------SSEEEE--EECCCSCCS--SBGGGTEEEEEECCC----CCCTTTTSCCC--SS
T ss_pred hccEEEEEECCCCCEEEEEc-------CCceee--cccccceec--CCCccEEEEEECCCC----CcceEEEEeCC--Cc
Confidence 57789999999999999998 689999 766665541 389999999999999 45555555542 22
Q ss_pred eeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccC-----CeEEEEEccCCCEEEEEec
Q psy3710 131 QLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEA-----PLSCIALNQTGTRLATASY 205 (424)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~ 205 (424)
....+ .+ ...+.+++|+|+|+.||+ ++.||.|++||.+. ....+. |.. .|.+++|+|+|++|++|+.
T Consensus 78 ~~~~~-~~--~~~V~~vawSPdG~~LAs-~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~ 149 (588)
T 2j04_A 78 GLLNS-QP--VCYPRVCKPSPIDDWMAV-LSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE 149 (588)
T ss_dssp CSSTT-SC--SCCEEEEEECSSSSCEEE-EETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET
T ss_pred eEeec-CC--CCcEEEEEECCCCCEEEE-EeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC
Confidence 22222 22 345899999999999998 99999999999543 444455 655 4999999999999999999
Q ss_pred CCcEEEEEECCCcce-------eeEEe-------cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCC--Ceee-ccC
Q psy3710 206 KGTLIRVFDTGSGQK-------LNELR-------RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERP--PLDI-AAH 268 (424)
Q Consensus 206 d~~~i~iwd~~~~~~-------~~~~~-------~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~--~~~~-~~~ 268 (424)
||+ |++||+.+++. +.+++ ..+..++|+|++ +++++.|+.|++||+...... ...+ .+|
T Consensus 150 DGt-VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h 225 (588)
T 2j04_A 150 DGE-LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNAS 225 (588)
T ss_dssp TSE-EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCC
T ss_pred CCE-EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccc
Confidence 999 99999998753 45553 137889999998 455888999999999887632 2345 478
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceee------------ee--ccCCcEEEEEeCCCcEEEEEcccccc
Q psy3710 269 EAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN------------EL--RRDSSYLCVSSDHGTVHVFSVDEAQK 334 (424)
Q Consensus 269 ~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~------------~~--~~~~~~l~~~~~d~~i~iw~~~~~~~ 334 (424)
...|.+++|+ |+.||+++ +++ |++||+.+++... .| +|++..+++++.||+ ++|..+.
T Consensus 226 ~~~V~svaFs--g~~LASa~-~~t-IkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~--- 297 (588)
T 2j04_A 226 RRKITDLKIV--DYKVVLTC-PGY-VHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE--- 297 (588)
T ss_dssp SSCCCCEEEE--TTEEEEEC-SSE-EEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS---
T ss_pred cCcEEEEEEE--CCEEEEEe-CCe-EEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc---
Confidence 8999999999 68999998 588 9999999877622 36 889999999999999 9999872
Q ss_pred ccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCCccee---eeeehhhheec
Q psy3710 335 INKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECW---RDVYIQFLEMT 411 (424)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~~---~~~~~~~~~~~ 411 (424)
++++||+..+++. |+++++|+.. +++.. ....+..+.++
T Consensus 298 -----------------------------------~~~spd~~l~a~~--d~~v~lW~~~-g~~l~~~~~~~~I~~va~S 339 (588)
T 2j04_A 298 -----------------------------------LHVTADNIIAPYL--EKKFKKWSTI-WNEFNNYETTLVIHGISLS 339 (588)
T ss_dssp -----------------------------------EEEECCCSSHHHH--HHHHHHTTTT-TTSSSSSCCEEEEEEEEEC
T ss_pred -----------------------------------EEECCCceEEEEc--CCEEEEEECC-CCceeeeccceEEEEEEEC
Confidence 2589999887774 9999999874 22221 23445668899
Q ss_pred CCCceeeEEEe
Q psy3710 412 NDSNLLSCIEI 422 (424)
Q Consensus 412 ~d~~~l~~~~~ 422 (424)
|||+.+|.+--
T Consensus 340 PdG~~lA~~~~ 350 (588)
T 2j04_A 340 PDGYSIAIVYD 350 (588)
T ss_dssp TTSSEEEEEEE
T ss_pred CCCCEEEEEEe
Confidence 99999998753
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=264.08 Aligned_cols=240 Identities=16% Similarity=0.190 Sum_probs=192.0
Q ss_pred cCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCc-----------EEEEEe-ec------------CCeEEE
Q psy3710 50 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ-----------VVICLE-FN------------APVKGV 105 (424)
Q Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~-----------~~~~~~-~~------------~~v~~~ 105 (424)
+.+.|.+++|+|+++++++++ .|+.|++||+.+++ ....+. |. ..|.++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~-------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l 99 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGD-------KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKI 99 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEE-------TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEE
T ss_pred ccCcEEEEEECCCCCEEEEEc-------CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEE
Confidence 468999999999999999988 68999999998877 466666 66 889999
Q ss_pred EecCCc--eEEEe---eccEEEEeecCCCcee---------------------------------------EE-EeeCCC
Q psy3710 106 RLRRDK--IVVVL---EGLIKVYTFIQCPQQL---------------------------------------HV-FETNPN 140 (424)
Q Consensus 106 ~~~~~~--~~~~~---~~~i~v~~~~~~~~~~---------------------------------------~~-~~~~~~ 140 (424)
+|+|++ ..+++ |+.|++|++. ..... .. ...|.
T Consensus 100 ~~~~~~~~~~l~s~s~d~~i~iw~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~- 177 (447)
T 3dw8_B 100 RWLPQKNAAQFLLSTNDKTIKLWKIS-ERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT- 177 (447)
T ss_dssp EECCCCSSSEEEEEECSSCEEEEEEE-EEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS-
T ss_pred EEcCCCCcceEEEeCCCCeEEEEecc-cccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC-
Confidence 999996 34433 9999999986 32211 11 12343
Q ss_pred CCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCc-------ccccccCCeEEEEEccCC-CEEEEEecCCcEEEE
Q psy3710 141 PKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL-------DIAAHEAPLSCIALNQTG-TRLATASYKGTLIRV 212 (424)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~~i~i 212 (424)
..+.+++|+|++++|++ | .|+.|++||++....... .+.+|...|.+++|+|++ ++|++++.|+. |++
T Consensus 178 -~~v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~i 253 (447)
T 3dw8_B 178 -YHINSISINSDYETYLS-A-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRL 253 (447)
T ss_dssp -SCCCEEEECTTSSEEEE-E-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEE
T ss_pred -cceEEEEEcCCCCEEEE-e-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEE
Confidence 45888999999999998 7 799999999984323332 467899999999999998 99999999999 999
Q ss_pred EECCCcce----eeEEec---------------ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCC--
Q psy3710 213 FDTGSGQK----LNELRR---------------GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAP-- 271 (424)
Q Consensus 213 wd~~~~~~----~~~~~~---------------~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-- 271 (424)
||+++++. +..+.. .+..++++|++..++. ++. +.|++||+++...+...+..|...
T Consensus 254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~ 331 (447)
T 3dw8_B 254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT-RDY-LSVKVWDLNMENRPVETYQVHEYLRS 331 (447)
T ss_dssp EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE-EES-SEEEEEETTCCSSCSCCEESCGGGTT
T ss_pred EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE-eeC-CeEEEEeCCCCccccceeeccccccc
Confidence 99998876 566654 5678899998887775 666 999999999855566777777532
Q ss_pred -------------eEEEEEcCCCCEEEEEeCCCcEEEEEECCCCcee
Q psy3710 272 -------------LSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL 305 (424)
Q Consensus 272 -------------v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~ 305 (424)
+..++|+|++++|++++.|+. |++||+.+++.+
T Consensus 332 ~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~-v~iwd~~~~~~~ 377 (447)
T 3dw8_B 332 KLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNF-FRMFDRNTKRDI 377 (447)
T ss_dssp THHHHHHTSGGGCCCCEEECTTSSEEEEECSTTE-EEEEETTTCCEE
T ss_pred cccccccccccccceEEEECCCCCEEEEeccCCE-EEEEEcCCCcce
Confidence 334999999999999999999 999999988765
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=258.05 Aligned_cols=256 Identities=14% Similarity=0.141 Sum_probs=205.7
Q ss_pred cccccccCCceEEEEECCCCCeeEeecCCe-EEEEeCC--cCcccccccccCCCeeeEEEecc--CceEEEEeCCcCCCc
Q psy3710 3 LGTSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCD--PLKEKERQDFTDGGLGHVEMLFR--CNYLALVGGGTHPKY 77 (424)
Q Consensus 3 ~~~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~--~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~~~~ 77 (424)
+..+.+|.+.|++++|+|++++||+|+.++ |+||++. +.+.......|.+.|.+++|+++ ++++++++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~------- 76 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS------- 76 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE-------
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEec-------
Confidence 346889999999999999999999999888 9999997 44445556678999999999987 88888888
Q ss_pred CCCeEEEEECCCCc--EEEEEe-ecCCeEEEEecCC--ceEEEe---eccEEEEeecCCC-ceeEEEeeCCCCCeeEEEe
Q psy3710 78 PNNRVMIWDDLKKQ--VVICLE-FNAPVKGVRLRRD--KIVVVL---EGLIKVYTFIQCP-QQLHVFETNPNPKGLCVLC 148 (424)
Q Consensus 78 ~d~~i~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~---~~~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~ 148 (424)
.|+.|++||+.+++ .+..+. |...|.+++|+|+ +.++++ |+.|++||+.... .....+..+. ..+.+++
T Consensus 77 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~--~~v~~~~ 154 (379)
T 3jrp_A 77 YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA--IGVNSAS 154 (379)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT--TCEEEEE
T ss_pred cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC--CceEEEE
Confidence 68999999999887 555555 7899999999998 655554 8999999997332 2333444444 5588999
Q ss_pred ecC-------------CCCeEEEeeccCCeEEEEeCCCCCC---CCcccccccCCeEEEEEccC---CCEEEEEecCCcE
Q psy3710 149 PNS-------------NNSLLAFPGRKSGHVHLVDLADPER---PPLDIAAHEAPLSCIALNQT---GTRLATASYKGTL 209 (424)
Q Consensus 149 ~~~-------------~~~~l~~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~~ 209 (424)
|+| ++.++++ |+.||.|++||++.+.. ....+.+|...|.+++|+|+ +++|++++.|+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~- 232 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT- 232 (379)
T ss_dssp ECCCC----------CTTCEEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-
T ss_pred EcCccccccccccCCCCCCEEEE-EeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE-
Confidence 999 6888888 99999999999987532 23466789999999999999 899999999999
Q ss_pred EEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeC
Q psy3710 210 IRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY 289 (424)
Q Consensus 210 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 289 (424)
|++||++++....... ......|...|.+++|+|++++|++++.
T Consensus 233 i~iwd~~~~~~~~~~~------------------------------------~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 276 (379)
T 3jrp_A 233 CIIWTQDNEQGPWKKT------------------------------------LLKEEKFPDVLWRASWSLSGNVLALSGG 276 (379)
T ss_dssp EEEEEESSTTSCCEEE------------------------------------ESSSSCCSSCEEEEEECSSSCCEEEEES
T ss_pred EEEEeCCCCCccceee------------------------------------eeccccCCCcEEEEEEcCCCCEEEEecC
Confidence 9999998764221110 0111258889999999999999999999
Q ss_pred CCcEEEEEECCCCceee
Q psy3710 290 KGTLIRVFDTGSGQKLN 306 (424)
Q Consensus 290 d~~~i~iwd~~~~~~~~ 306 (424)
||. |++|++..+....
T Consensus 277 dg~-i~iw~~~~~~~~~ 292 (379)
T 3jrp_A 277 DNK-VTLWKENLEGKWE 292 (379)
T ss_dssp SSS-EEEEEEEETTEEE
T ss_pred CCc-EEEEeCCCCCccc
Confidence 999 9999998654433
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-35 Score=253.83 Aligned_cols=261 Identities=16% Similarity=0.193 Sum_probs=190.6
Q ss_pred EeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCC-CCCcccccccCCeEEEEEcc--CCCEEEEEecCCcEEE
Q psy3710 135 FETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE-RPPLDIAAHEAPLSCIALNQ--TGTRLATASYKGTLIR 211 (424)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~~i~ 211 (424)
+.+|.. .+.+++|+|++++|++ |+.|+.|++||+.++. .....+.+|.++|.+++|+| ++++|++++.|++ |+
T Consensus 9 ~~~H~~--~V~~v~~s~~g~~las-gs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~-v~ 84 (316)
T 3bg1_A 9 DTSHED--MIHDAQMDYYGTRLAT-CSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRK-VI 84 (316)
T ss_dssp -----C--CEEEEEECGGGCEEEE-EETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSC-EE
T ss_pred cccccC--eEEEeeEcCCCCEEEE-EeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCE-EE
Confidence 345554 4889999999999998 9999999999998752 23567889999999999986 4899999999999 99
Q ss_pred EEECCCcc--eeeEEecc---eeeeeecCCC-CeEEEEeecCCeEEEEeCCCCCCC--CeeeccCCCCeEEEEEcCC---
Q psy3710 212 VFDTGSGQ--KLNELRRG---LCVLCPNSNN-SLLAFPGRKSGHVHLVDLADPERP--PLDIAAHEAPLSCIALNQT--- 280 (424)
Q Consensus 212 iwd~~~~~--~~~~~~~~---~~~~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~--- 280 (424)
+||+++++ ....+..+ +..++++|++ ..++++|+.|+.|++||++..... ...+.+|...|.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 99998874 45555443 7788999984 456677999999999999875421 3455689999999999997
Q ss_pred --------------CCEEEEEeCCCcEEEEEECCCC---ceee------------eeccCC----cEEEEEeCCCcEEEE
Q psy3710 281 --------------GTRLATASYKGTLIRVFDTGSG---QKLN------------ELRRDS----SYLCVSSDHGTVHVF 327 (424)
Q Consensus 281 --------------~~~l~~~~~d~~~i~iwd~~~~---~~~~------------~~~~~~----~~l~~~~~d~~i~iw 327 (424)
+++|++++.|+. |++||++.+ +++. .|+|++ .+|++++.|++|+||
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~-v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNL-IKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSB-CCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred ccccccccccCccccceEEEecCCCe-EEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 478999999999 999999754 2332 245665 789999999999999
Q ss_pred EccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCCcceeeeeehhh
Q psy3710 328 SVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWRDVYIQF 407 (424)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~ 407 (424)
++.+..... +....+..+.+.+..++|+|++++|++++.||.|++|+....++.. .
T Consensus 244 ~~~~~~~~~------------------~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~------~ 299 (316)
T 3bg1_A 244 TCDDASSNT------------------WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWV------C 299 (316)
T ss_dssp ECSSTTCCC------------------CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEE------E
T ss_pred EccCccccc------------------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEE------E
Confidence 997632100 0001123456788999999999999999999999999987554322 1
Q ss_pred heecCCCceeeEEEeeC
Q psy3710 408 LEMTNDSNLLSCIEILE 424 (424)
Q Consensus 408 ~~~~~d~~~l~~~~~~~ 424 (424)
+..-++++.++.+.|.|
T Consensus 300 ~~~~~~~~~~~~~~~~~ 316 (316)
T 3bg1_A 300 ISDVNKGQGSVSASVTE 316 (316)
T ss_dssp EEECC------------
T ss_pred eeeccCCCCceeeeecC
Confidence 22334555555555544
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=253.78 Aligned_cols=272 Identities=14% Similarity=0.070 Sum_probs=221.4
Q ss_pred Ccccc-ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcc---cccccccCCCeeeEEEeccCc-eEEEEeCCcC
Q psy3710 1 MNLGT-SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKE---KERQDFTDGGLGHVEMLFRCN-YLALVGGGTH 74 (424)
Q Consensus 1 m~~~~-l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~---~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~ 74 (424)
|+... ..+|.+.|++++|+|++++|++|+.++ |++|++.+.+. ......|...+.+++|+|+++ .+++++
T Consensus 1 m~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---- 76 (342)
T 1yfq_A 1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT---- 76 (342)
T ss_dssp CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE----
T ss_pred CcceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEc----
Confidence 33333 468999999999999999999998888 99999987761 223346789999999999999 888888
Q ss_pred CCcCCCeEEEEEC-CCCcEEEEEe--ecCCeEEEEecCCceEEEe---eccEEEEeecCC---------CceeEEEeeCC
Q psy3710 75 PKYPNNRVMIWDD-LKKQVVICLE--FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQC---------PQQLHVFETNP 139 (424)
Q Consensus 75 ~~~~d~~i~iwd~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~---------~~~~~~~~~~~ 139 (424)
.|+.|++||+ .+++...... |...|.+++|+| +..+++ |+.|++||++ . .+.+..+. +
T Consensus 77 ---~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~-~- 149 (342)
T 1yfq_A 77 ---VQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPR-NYGDGVIAVKNLNSNNTK-V- 149 (342)
T ss_dssp ---TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHH-HHTTBCEEEEESCSSSSS-S-
T ss_pred ---CCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccc-ccccccccccCCeeeEEe-e-
Confidence 5899999999 8888755555 889999999999 655544 8999999986 4 44444444 3
Q ss_pred CCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCC-CCCC-CcccccccCCeEEEEEcc-CCCEEEEEecCCcEEEEEECC
Q psy3710 140 NPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLAD-PERP-PLDIAAHEAPLSCIALNQ-TGTRLATASYKGTLIRVFDTG 216 (424)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~-~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~~i~iwd~~ 216 (424)
...+.+++++|++ +++ ++.++.|++||+++ .... ......|...|.+++|+| +++++++++.|+. |++|+++
T Consensus 150 -~~~v~~~~~~~~~--l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i~~~~ 224 (342)
T 1yfq_A 150 -KNKIFTMDTNSSR--LIV-GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFD 224 (342)
T ss_dssp -CCCEEEEEECSSE--EEE-EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECC
T ss_pred -CCceEEEEecCCc--EEE-EeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc-EEEEEEc
Confidence 3458889999887 666 99999999999997 5332 224456888999999999 9999999999999 9999998
Q ss_pred Cc------ceeeEEec------------ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccC-CCCeEEEEE
Q psy3710 217 SG------QKLNELRR------------GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAH-EAPLSCIAL 277 (424)
Q Consensus 217 ~~------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~ 277 (424)
.. +....+.. .+..++++|++..++ +++.||.|++||+.+++. ...+..| ..+|.+++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~~~- 301 (342)
T 1yfq_A 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY-TAGSDGIISCWNLQTRKK-IKNFAKFNEDSVVKIA- 301 (342)
T ss_dssp TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE-EEETTSCEEEEETTTTEE-EEECCCCSSSEEEEEE-
T ss_pred CCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEE-EecCCceEEEEcCccHhH-hhhhhcccCCCceEec-
Confidence 76 66666654 466789999888765 489999999999998763 5566777 99999999
Q ss_pred cCCCCEEEEEeCCCc
Q psy3710 278 NQTGTRLATASYKGT 292 (424)
Q Consensus 278 ~~~~~~l~~~~~d~~ 292 (424)
|++++|++++.|+.
T Consensus 302 -~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 302 -CSDNILCLATSDDT 315 (342)
T ss_dssp -ECSSEEEEEEECTH
T ss_pred -CCCCeEEEEecCCc
Confidence 99999999999986
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=245.20 Aligned_cols=325 Identities=14% Similarity=0.118 Sum_probs=241.4
Q ss_pred CCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEE-Ee---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCC
Q psy3710 78 PNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVV-VL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNN 153 (424)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (424)
.|+.|++||+.+++.+..+.+...+.+++|+|++..+ ++ ++.|++||+. +++.+..+..+. .+.+++++|++
T Consensus 10 ~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~-~~~~~~~~~~~~---~v~~~~~spdg 85 (391)
T 1l0q_A 10 ESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA-TNNVIATVPAGS---SPQGVAVSPDG 85 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT-TTEEEEEEECSS---SEEEEEECTTS
T ss_pred CCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECC-CCeEEEEEECCC---CccceEECCCC
Confidence 4899999999999999999877789999999999654 33 7899999996 777777776554 57889999999
Q ss_pred CeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEE-EEEecCCcEEEEEECCCcceeeEEecc--eee
Q psy3710 154 SLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRL-ATASYKGTLIRVFDTGSGQKLNELRRG--LCV 230 (424)
Q Consensus 154 ~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~~i~iwd~~~~~~~~~~~~~--~~~ 230 (424)
++|+++++.++.|++||+.++ +....+. +...+.+++|+|+++.+ ++++.++. |++||+.+++.+..+..+ ...
T Consensus 86 ~~l~~~~~~~~~v~v~d~~~~-~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~-v~~~d~~~~~~~~~~~~~~~~~~ 162 (391)
T 1l0q_A 86 KQVYVTNMASSTLSVIDTTSN-TVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKT-VSVINTVTKAVINTVSVGRSPKG 162 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTT-EEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEEECCSSEEE
T ss_pred CEEEEEECCCCEEEEEECCCC-eEEEEEe-CCCCcceEEECCCCCEEEEEeCCCCE-EEEEECCCCcEEEEEecCCCcce
Confidence 998775778899999999986 4444444 44578999999999977 67778998 999999999888877644 677
Q ss_pred eeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEEECCCCceeee
Q psy3710 231 LCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS---YKGTLIRVFDTGSGQKLNE 307 (424)
Q Consensus 231 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~~i~iwd~~~~~~~~~ 307 (424)
++++|++..+++++..++.|++||+++++. ...+ .+...+.+++|+|++++|++++ .++. |++||+.+++.+..
T Consensus 163 ~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~-v~~~d~~~~~~~~~ 239 (391)
T 1l0q_A 163 IAVTPDGTKVYVANFDSMSISVIDTVTNSV-IDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTGTNKITAR 239 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCE-EEEEETTTTEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCeE-EEEE-ecCCCccceEECCCCCEEEEEecCcCCCc-EEEEECCCCeEEEE
Confidence 899999999988899999999999988653 2233 4567899999999999999988 6888 99999998876654
Q ss_pred -----------eccCCcEE-EEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecC
Q psy3710 308 -----------LRRDSSYL-CVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGAD 375 (424)
Q Consensus 308 -----------~~~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 375 (424)
++|+++++ ++++.|+.|++||+.+++.+.............. +..............|+.+
T Consensus 240 ~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~a~fs~~ 312 (391)
T 1l0q_A 240 IPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQ-------FIGSIPVQPVYPSADFKSN 312 (391)
T ss_dssp EECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSS-------CEEECSSCCCCCBCCEEES
T ss_pred EecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccce-------eeecccccccccccccccc
Confidence 56889877 6778899999999999877655433211100000 0000000011112233332
Q ss_pred C----------CeEEEEeccCcEEEEEecCCcceeeeeehhhheecCCCceeeEEE
Q psy3710 376 S----------NSIIVICADGSYYKFMFNSKGECWRDVYIQFLEMTNDSNLLSCIE 421 (424)
Q Consensus 376 ~----------~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 421 (424)
. ..+...+.|...++|++.. +.. .........++++|.+.+...
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-g~~-~~~~~~~~~~~~~g~y~~~~~ 366 (391)
T 1l0q_A 313 ITSGYIFLSEPVQFTDLSKDATEWKWDFGD-GSS-SKKQNPTHTYSETGIYTVRLT 366 (391)
T ss_dssp CCSSEEETTCCEEEEECCBSCSEEEEECSS-SCE-ECSSSCEECCSSCEEEEEEEE
T ss_pred cccccccccceEEEEeCCCCceEEEEECCC-Ccc-cCcCCCeEEeCCCceEEEEEE
Confidence 2 3455566788999999974 332 223334456788888877654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-34 Score=252.87 Aligned_cols=277 Identities=13% Similarity=0.128 Sum_probs=222.1
Q ss_pred ccccccCCceEEEEECCC---CCeeEeecCCe-EEEEeCCc-Cccc-ccccccCCCeeeEEEeccCceEEEEeCCcCCCc
Q psy3710 4 GTSSTYKNGLLYAGFNQD---QGCFACGMEDG-FRIYNCDP-LKEK-ERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKY 77 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~---g~~la~g~~~~-i~iw~~~~-~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~ 77 (424)
..+.+|.+.|++++|+|+ |++|++|+.++ |++||+++ +... .....|.+.|.+++|+|+++++++++
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~------- 105 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS------- 105 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE-------
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc-------
Confidence 347899999999999999 69999999888 99999987 4443 45666899999999999999999888
Q ss_pred CCCeEEEEECCCCcEEEEEeecCCeEEEEe--cCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCC
Q psy3710 78 PNNRVMIWDDLKKQVVICLEFNAPVKGVRL--RRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSN 152 (424)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (424)
.|+.|++||+.+++.+....|...|.+++| ++++.++++ |+.|++||++ ..+.+..+..+. .+.++.+.
T Consensus 106 ~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~---~~~~~~~~-- 179 (368)
T 3mmy_A 106 CDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR-SSNPMMVLQLPE---RCYCADVI-- 179 (368)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSS-CSSCSEEEECSS---CEEEEEEE--
T ss_pred CCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECC-CCcEEEEEecCC---CceEEEec--
Confidence 689999999999998887779999999999 899876665 8999999997 677777777654 34555554
Q ss_pred CCeEEEeeccCCeEEEEeCCCCCCCCccc-ccccCCeEEEEEccCCCE----EEEEecCCcEEEEEECCCc---ceeeEE
Q psy3710 153 NSLLAFPGRKSGHVHLVDLADPERPPLDI-AAHEAPLSCIALNQTGTR----LATASYKGTLIRVFDTGSG---QKLNEL 224 (424)
Q Consensus 153 ~~~l~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~----l~~~~~d~~~i~iwd~~~~---~~~~~~ 224 (424)
...+++ ++.++.+.+|+++......... ..+...+..+++.++... +++++.|+. |++||++.. +....+
T Consensus 180 ~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~-i~i~~~~~~~~~~~~~~~ 257 (368)
T 3mmy_A 180 YPMAVV-ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR-VAIHYINPPNPAKDNFTF 257 (368)
T ss_dssp TTEEEE-EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE-EEEEESSCSCHHHHSEEE
T ss_pred CCeeEE-EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc-EEEEecCCCCccccceee
Confidence 446666 8899999999998753222222 234456677777665554 999999999 999999887 445555
Q ss_pred ec---------------ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeC
Q psy3710 225 RR---------------GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY 289 (424)
Q Consensus 225 ~~---------------~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 289 (424)
.. .+..++++|++..++ +++.||.|++||+.+++ ....+..|..+|.+++|+|++++|++++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 258 KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLA-TVGSDGRFSFWDKDART-KLKTSEQLDQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp ECSEEC----CCCEEECCEEEEEECTTTCCEE-EEETTSCEEEEETTTTE-EEEECCCCSSCEEEEEECTTSSCEEEEEC
T ss_pred eeeecccccccccccccceEEEEEecCCCEEE-EEccCCeEEEEECCCCc-EEEEecCCCCCceEEEECCCCCeEEEEec
Confidence 43 366789999887665 59999999999999865 35667789999999999999999999999
Q ss_pred CCcEEEEEE
Q psy3710 290 KGTLIRVFD 298 (424)
Q Consensus 290 d~~~i~iwd 298 (424)
|+. .+.|+
T Consensus 336 d~~-~~~~~ 343 (368)
T 3mmy_A 336 YDW-SKGHE 343 (368)
T ss_dssp CCS-TTCGG
T ss_pred ccc-ccccc
Confidence 876 44443
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=245.41 Aligned_cols=269 Identities=13% Similarity=0.122 Sum_probs=217.6
Q ss_pred CeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCC
Q psy3710 23 GCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAP 101 (424)
Q Consensus 23 ~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 101 (424)
.++++++.++ |++||+++++.......+ ..+.+++|+|+++.+++++. .|++|++||+.+++.+..+.+...
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~------~d~~i~v~d~~~~~~~~~~~~~~~ 75 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANA------HSNDVSIIDTATNNVIATVPAGSS 75 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEG------GGTEEEEEETTTTEEEEEEECSSS
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecC-CCcceEEECCCCCEEEEECC------CCCeEEEEECCCCeEEEEEECCCC
Confidence 3566777777 999999988876655554 45889999999998866654 379999999999999999987779
Q ss_pred eEEEEecCCceEEE-e---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCC
Q psy3710 102 VKGVRLRRDKIVVV-L---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERP 177 (424)
Q Consensus 102 v~~~~~~~~~~~~~-~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~ 177 (424)
+.+++|+|++..++ + ++.|++||+. +++.+..+..+. .+..++++|+++.++++++.++.|++||+.++ +.
T Consensus 76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~-~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-~~ 150 (391)
T 1l0q_A 76 PQGVAVSPDGKQVYVTNMASSTLSVIDTT-SNTVAGTVKTGK---SPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-AV 150 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEECSS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EE
T ss_pred ccceEECCCCCEEEEEECCCCEEEEEECC-CCeEEEEEeCCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCC-cE
Confidence 99999999997654 3 5899999996 677776666543 46789999999988655889999999999876 45
Q ss_pred CcccccccCCeEEEEEccCCCEE-EEEecCCcEEEEEECCCcceeeEEecc--eeeeeecCCCCeEEEEee--cCCeEEE
Q psy3710 178 PLDIAAHEAPLSCIALNQTGTRL-ATASYKGTLIRVFDTGSGQKLNELRRG--LCVLCPNSNNSLLAFPGR--KSGHVHL 252 (424)
Q Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~dg~i~i 252 (424)
...+..+ ..+.+++|+|+++.+ ++++.++. |++||+++++.+..+..+ ...++++|++..+++++. .++.|++
T Consensus 151 ~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~-v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~ 228 (391)
T 1l0q_A 151 INTVSVG-RSPKGIAVTPDGTKVYVANFDSMS-ISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSM 228 (391)
T ss_dssp EEEEECC-SSEEEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEE
T ss_pred EEEEecC-CCcceEEECCCCCEEEEEeCCCCE-EEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEE
Confidence 5555544 557999999999887 56778888 999999999888777644 667889999999888665 7999999
Q ss_pred EeCCCCCCCCeeeccCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEECCCCceeeee
Q psy3710 253 VDLADPERPPLDIAAHEAPLSCIALNQTGTRL-ATASYKGTLIRVFDTGSGQKLNEL 308 (424)
Q Consensus 253 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~~i~iwd~~~~~~~~~~ 308 (424)
||+.+++. ...+..| ..+.+++|+|++++| ++++.|+. |++||+.+++.+..+
T Consensus 229 ~d~~~~~~-~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~-v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 229 IDTGTNKI-TARIPVG-PDPAGIAVTPDGKKVYVALSFXNT-VSVIDTATNTITATM 282 (391)
T ss_dssp EETTTTEE-EEEEECC-SSEEEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEE
T ss_pred EECCCCeE-EEEEecC-CCccEEEEccCCCEEEEEcCCCCE-EEEEECCCCcEEEEE
Confidence 99988653 3444444 457899999999987 56678999 999999999887664
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-34 Score=260.03 Aligned_cols=266 Identities=13% Similarity=0.146 Sum_probs=205.3
Q ss_pred EECCCCCeeEeecCCeEEEEeCCcCcccccc-cccCCCeeeEEEec-cCceEEEEeCCcCCCcCCCeEEEEECCC---Cc
Q psy3710 17 GFNQDQGCFACGMEDGFRIYNCDPLKEKERQ-DFTDGGLGHVEMLF-RCNYLALVGGGTHPKYPNNRVMIWDDLK---KQ 91 (424)
Q Consensus 17 ~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~~~~~~~~d~~i~iwd~~~---~~ 91 (424)
.|+|+++.++++. .|+.. ++.+... ..|.+.|.+++|+| +++++++++ .|++|++||+.+ +.
T Consensus 34 ~f~~~~~~~~~~~-----~w~~~-g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s-------~dg~v~vwd~~~~~~~~ 100 (437)
T 3gre_A 34 EFGPIQEIVRSPN-----MGNLR-GKLIATLMENEPNSITSSAVSPGETPYLITGS-------DQGVIKIWNLKEIIVGE 100 (437)
T ss_dssp GGCCCCCCCCCCC-----GGGCC-CCEEEEECTTTTSCEEEEEEECSSSCEEEEEE-------TTSEEEEEEHHHHHTTC
T ss_pred hcCCccccccccc-----ccccc-ceEEeeeccCCCCceEEEEECCCCCCEEEEec-------CCceEEEeECcccccCc
Confidence 4677777777665 48743 4444444 67889999999999 999999998 689999999876 33
Q ss_pred ---EEEEEeecCCeEEEEecCCceEEEe---eccEEEEeec--CCCceeEEEeeC--------C--CCCeeEEEe--ecC
Q psy3710 92 ---VVICLEFNAPVKGVRLRRDKIVVVL---EGLIKVYTFI--QCPQQLHVFETN--------P--NPKGLCVLC--PNS 151 (424)
Q Consensus 92 ---~~~~~~~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~--~~~~~~~~~~~~--------~--~~~~~~~~~--~~~ 151 (424)
....+.|...|.+++|+|++..+++ |+.|++||+. ..++....+..+ . ....+.++. +++
T Consensus 101 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 180 (437)
T 3gre_A 101 VYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE 180 (437)
T ss_dssp CCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS
T ss_pred ccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC
Confidence 3445568999999999999876665 8999999994 133333332221 1 223344444 678
Q ss_pred CCCeEEEeeccCCeEEEEeCCCCCCCCccccc--ccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEeccee
Q psy3710 152 NNSLLAFPGRKSGHVHLVDLADPERPPLDIAA--HEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLC 229 (424)
Q Consensus 152 ~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~ 229 (424)
++.++++ |+.||.|++||++++ +.+..+.. |...|.+++|+|++++|++++.|+. |++||+++++++..+..
T Consensus 181 ~~~~l~~-~~~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~--- 254 (437)
T 3gre_A 181 EKSLLVA-LTNLSRVIIFDIRTL-ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGI-IDIWDIRFNVLIRSWSF--- 254 (437)
T ss_dssp SCEEEEE-EETTSEEEEEETTTC-CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSC-EEEEETTTTEEEEEEBC---
T ss_pred CCCEEEE-EeCCCeEEEEeCCCC-eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCe-EEEEEcCCccEEEEEec---
Confidence 8999998 999999999999986 66777777 8999999999999999999999999 99999998877665531
Q ss_pred eeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEc----CCCCEEEEEeCCCcEEEEEECCCCcee
Q psy3710 230 VLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALN----QTGTRLATASYKGTLIRVFDTGSGQKL 305 (424)
Q Consensus 230 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~d~~~i~iwd~~~~~~~ 305 (424)
.|..+|.+++|+ |++.+|++++.|+. |++||+++++++
T Consensus 255 -------------------------------------~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~~~~ 296 (437)
T 3gre_A 255 -------------------------------------GDHAPITHVEVCQFYGKNSVIVVGGSSKTF-LTIWNFVKGHCQ 296 (437)
T ss_dssp -------------------------------------TTCEEEEEEEECTTTCTTEEEEEEESTTEE-EEEEETTTTEEE
T ss_pred -------------------------------------CCCCceEEEEeccccCCCccEEEEEcCCCc-EEEEEcCCCcEE
Confidence 355678888555 46778999999998 999999888776
Q ss_pred eeec------------c-------------------------CCcEEEEEeCCCcEEEEEccccccccccc
Q psy3710 306 NELR------------R-------------------------DSSYLCVSSDHGTVHVFSVDEAQKINKQS 339 (424)
Q Consensus 306 ~~~~------------~-------------------------~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 339 (424)
..+. | ++++|++++.|+.|++||+.+++.+....
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 297 YAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp EEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred EEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEe
Confidence 6543 1 34789999999999999999988765433
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=258.40 Aligned_cols=277 Identities=11% Similarity=0.103 Sum_probs=223.5
Q ss_pred ceEEEEECCCCCeeE-eecCCe-EEEEeCCcCcc----cccccccCCCeeeEEEec-cCceEEEEeCCcCCCcCCCeEEE
Q psy3710 12 GLLYAGFNQDQGCFA-CGMEDG-FRIYNCDPLKE----KERQDFTDGGLGHVEMLF-RCNYLALVGGGTHPKYPNNRVMI 84 (424)
Q Consensus 12 ~V~~~~~s~~g~~la-~g~~~~-i~iw~~~~~~~----~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~~~~~d~~i~i 84 (424)
....++++|+...++ +++.++ |+||++..... ......|.+.|.+++|+| +++++++++ .|++|++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s-------~dg~v~v 108 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGS-------EDCTVMV 108 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEE-------TTSEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEe-------CCCeEEE
Confidence 445688999875554 567777 99999865432 333556899999999999 888898888 6899999
Q ss_pred EECCCC-------cEEEEEe-ecCCeEEEEecCCc-eEEEe---eccEEEEeecCCCceeEEE--eeCCCCCeeEEEeec
Q psy3710 85 WDDLKK-------QVVICLE-FNAPVKGVRLRRDK-IVVVL---EGLIKVYTFIQCPQQLHVF--ETNPNPKGLCVLCPN 150 (424)
Q Consensus 85 wd~~~~-------~~~~~~~-~~~~v~~~~~~~~~-~~~~~---~~~i~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 150 (424)
||+.++ +.+..+. |...|.+++|+|++ .++++ |+.|++||+. .++.+..+ ..|. ..+.+++|+
T Consensus 109 w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~--~~v~~~~~~ 185 (402)
T 2aq5_A 109 WEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG-TGAAVLTLGPDVHP--DTIYSVDWS 185 (402)
T ss_dssp EECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT-TTEEEEEECTTTCC--SCEEEEEEC
T ss_pred EEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC-CCCccEEEecCCCC--CceEEEEEC
Confidence 999987 5566776 89999999999997 45554 8999999997 77777777 4454 558999999
Q ss_pred CCCCeEEEeeccCCeEEEEeCCCCCCCCccc-ccccCC-eEEEEEccCCCEEEEE---ecCCcEEEEEECCCcce-eeEE
Q psy3710 151 SNNSLLAFPGRKSGHVHLVDLADPERPPLDI-AAHEAP-LSCIALNQTGTRLATA---SYKGTLIRVFDTGSGQK-LNEL 224 (424)
Q Consensus 151 ~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~~~---~~d~~~i~iwd~~~~~~-~~~~ 224 (424)
|++++|++ ++.||.|++||++++ ..+..+ ..|.+. +.+++|+|++++|+++ +.|+. |++||+++++. +...
T Consensus 186 ~~~~~l~~-~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~-i~iwd~~~~~~~~~~~ 262 (402)
T 2aq5_A 186 RDGALICT-SCRDKRVRVIEPRKG-TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQ-VALWDTKHLEEPLSLQ 262 (402)
T ss_dssp TTSSCEEE-EETTSEEEEEETTTT-EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEE-EEEEETTBCSSCSEEE
T ss_pred CCCCEEEE-EecCCcEEEEeCCCC-ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCce-EEEEcCccccCCceEE
Confidence 99999998 999999999999986 556666 678776 8999999999999998 78999 99999998754 3222
Q ss_pred e----cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeecc--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEE
Q psy3710 225 R----RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAA--HEAPLSCIALNQTGTRLATASYKGTLIRVFD 298 (424)
Q Consensus 225 ~----~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd 298 (424)
. ..+..++++|++..++++|+.||.|++||+.+++.....+.. |..+|.+++|+|++.++++ .++. +++|+
T Consensus 263 ~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~-~~~~~ 339 (402)
T 2aq5_A 263 ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEI-ARFYK 339 (402)
T ss_dssp ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEE-EEEEE
T ss_pred eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--ccee-EEEEE
Confidence 2 337788999999999988889999999999987753444444 5589999999999988775 4557 99999
Q ss_pred CCCCce
Q psy3710 299 TGSGQK 304 (424)
Q Consensus 299 ~~~~~~ 304 (424)
+.+++.
T Consensus 340 l~~~~~ 345 (402)
T 2aq5_A 340 LHERKC 345 (402)
T ss_dssp EETTEE
T ss_pred cCCCcE
Confidence 987654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=250.10 Aligned_cols=280 Identities=13% Similarity=0.185 Sum_probs=222.9
Q ss_pred EECCCCcEEEEEe-ecCCeEEEEecCC---ceEEEe---eccEEEEeecCCCcee-EEEeeCCCCCeeEEEeecCCCCeE
Q psy3710 85 WDDLKKQVVICLE-FNAPVKGVRLRRD---KIVVVL---EGLIKVYTFIQCPQQL-HVFETNPNPKGLCVLCPNSNNSLL 156 (424)
Q Consensus 85 wd~~~~~~~~~~~-~~~~v~~~~~~~~---~~~~~~---~~~i~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 156 (424)
|+....+.+..+. |.+.|.+++|+|+ +.++++ |+.|++||+...+..+ ..+..|..+ +.+++|+|++++|
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l 101 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGP--VLDVCWSDDGSKV 101 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSC--EEEEEECTTSSEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCC--EEEEEECcCCCEE
Confidence 3445555666665 8999999999999 466665 8999999997424444 667777644 8899999999999
Q ss_pred EEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEE--ccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeec
Q psy3710 157 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIAL--NQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPN 234 (424)
Q Consensus 157 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 234 (424)
++ ++.||.|++||+.++ ....+..|...|.+++| +|++++|++++.|+. |++||+++++.+..+..+....++.
T Consensus 102 ~s-~~~dg~v~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~ 177 (368)
T 3mmy_A 102 FT-ASCDKTAKMWDLSSN--QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKT-LKFWDTRSSNPMMVLQLPERCYCAD 177 (368)
T ss_dssp EE-EETTSEEEEEETTTT--EEEEEEECSSCEEEEEEEECSSCEEEEEEETTSE-EEEECSSCSSCSEEEECSSCEEEEE
T ss_pred EE-EcCCCcEEEEEcCCC--CceeeccccCceEEEEEEeCCCCCEEEEccCCCc-EEEEECCCCcEEEEEecCCCceEEE
Confidence 98 999999999999985 34456789999999999 899999999999999 9999999999998888776666665
Q ss_pred CCCCeEEEEeecCCeEEEEeCCCCCCCCeee-ccCCCCeEEEEEcCCCCE----EEEEeCCCcEEEEEECCCCce-----
Q psy3710 235 SNNSLLAFPGRKSGHVHLVDLADPERPPLDI-AAHEAPLSCIALNQTGTR----LATASYKGTLIRVFDTGSGQK----- 304 (424)
Q Consensus 235 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~----l~~~~~d~~~i~iwd~~~~~~----- 304 (424)
+....+++ ++.++.+++|+++......... ..+...+.++++.++... +++++.|+. |++||++....
T Consensus 178 ~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~-i~i~~~~~~~~~~~~~ 255 (368)
T 3mmy_A 178 VIYPMAVV-ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR-VAIHYINPPNPAKDNF 255 (368)
T ss_dssp EETTEEEE-EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE-EEEEESSCSCHHHHSE
T ss_pred ecCCeeEE-EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc-EEEEecCCCCccccce
Confidence 55555554 8899999999998765333222 234556677777665554 999999999 99999987621
Q ss_pred --------------------e--eeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEee
Q psy3710 305 --------------------L--NELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQI 362 (424)
Q Consensus 305 --------------------~--~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (424)
+ ..|+|++++|++++.||.|++||+.+++++.. +..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~----------------------~~~ 313 (368)
T 3mmy_A 256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT----------------------SEQ 313 (368)
T ss_dssp EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE----------------------CCC
T ss_pred eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEE----------------------ecC
Confidence 2 24678999999999999999999998776433 334
Q ss_pred cCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 363 PSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 363 ~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
|.+++..++|+|++++|++++.|+..+.|++.
T Consensus 314 ~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 314 LDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp CSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred CCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 56789999999999999999999877666654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=248.25 Aligned_cols=276 Identities=17% Similarity=0.223 Sum_probs=191.1
Q ss_pred cCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe-eccEEEEeecC
Q psy3710 50 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQ 127 (424)
Q Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~ 127 (424)
|...|.++ .++++.+++++ .|+.|++||..+++.+..+. |...|.++++.++..+.++ ||.|++||+.
T Consensus 132 ~~~~v~~~--~~d~~~l~~g~-------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~- 201 (435)
T 1p22_A 132 TSKGVYCL--QYDDQKIVSGL-------RDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN- 201 (435)
T ss_dssp SCCCEEEE--ECCSSEEEEEE-------SSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESS-
T ss_pred CCCcEEEE--EECCCEEEEEe-------CCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECC-
Confidence 44556554 55889998888 58999999999999999988 8999999999443333333 8999999997
Q ss_pred CCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCC---cccccccCCeEEEEEccCCCEEEEEe
Q psy3710 128 CPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPP---LDIAAHEAPLSCIALNQTGTRLATAS 204 (424)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~ 204 (424)
+++.+..+..|.. .+.++.++ +..+++ |+.||.|++||+.++ ... ..+.+|...|.+++| +++++++++
T Consensus 202 ~~~~~~~~~~h~~--~v~~l~~~--~~~l~s-~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~ 273 (435)
T 1p22_A 202 TGEMLNTLIHHCE--AVLHLRFN--NGMMVT-CSKDRSIAVWDMASP-TDITLRRVLVGHRAAVNVVDF--DDKYIVSAS 273 (435)
T ss_dssp SCCEEEEECCCCS--CEEEEECC--TTEEEE-EETTSCEEEEECSSS-SCCEEEEEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred CCcEEEEEcCCCC--cEEEEEEc--CCEEEE-eeCCCcEEEEeCCCC-CCceeeeEecCCCCcEEEEEe--CCCEEEEEe
Confidence 7788888887764 47888886 457777 999999999999986 333 567789999999999 678999999
Q ss_pred cCCcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCC
Q psy3710 205 YKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTG 281 (424)
Q Consensus 205 ~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 281 (424)
.|+. |++||+++++.+..+..+ +..+.+ ++ .++++|+.||.|++||+++++ ....+.+|...|.+++|
T Consensus 274 ~dg~-i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~---- 344 (435)
T 1p22_A 274 GDRT-IKVWNTSTCEFVRTLNGHKRGIACLQY--RD-RLVVSGSSDNTIRLWDIECGA-CLRVLEGHEELVRCIRF---- 344 (435)
T ss_dssp TTSE-EEEEETTTCCEEEEEECCSSCEEEEEE--ET-TEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEC----
T ss_pred CCCe-EEEEECCcCcEEEEEcCCCCcEEEEEe--CC-CEEEEEeCCCeEEEEECCCCC-EEEEEeCCcCcEEEEEe----
Confidence 9999 999999998887776633 222222 22 233335555555555555433 23344455555555544
Q ss_pred CEEEEEeCCCcEEEEEECCCCceeeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEe
Q psy3710 282 TRLATASYKGTLIRVFDTGSGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQ 361 (424)
Q Consensus 282 ~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (424)
++.+|++|+.||.|++||+.+++..... ........+.
T Consensus 345 -----------------------------~~~~l~sg~~dg~i~vwd~~~~~~~~~~-------------~~~~~~~~~~ 382 (435)
T 1p22_A 345 -----------------------------DNKRIVSGAYDGKIKVWDLVAALDPRAP-------------AGTLCLRTLV 382 (435)
T ss_dssp -----------------------------CSSEEEEEETTSCEEEEEHHHHTSTTSC-------------TTTTEEEEEC
T ss_pred -----------------------------cCCEEEEEeCCCcEEEEECCCCCCcccc-------------ccchheeecc
Confidence 3345555555556666665554321110 0011123355
Q ss_pred ecCCCceEEEEecCCCeEEEEeccCcEEEEEecCC
Q psy3710 362 IPSDPPCICAFGADSNSIIVICADGSYYKFMFNSK 396 (424)
Q Consensus 362 ~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~ 396 (424)
.|.+.+..++| ++++|++++.||.|++|++...
T Consensus 383 ~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 383 EHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp CCSSCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred CCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence 67778888888 7889999999999999999743
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=232.68 Aligned_cols=272 Identities=11% Similarity=0.107 Sum_probs=196.0
Q ss_pred ceEEEEECCCC---CeeEeecCCeEEEEeCCcC---cccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEE
Q psy3710 12 GLLYAGFNQDQ---GCFACGMEDGFRIYNCDPL---KEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIW 85 (424)
Q Consensus 12 ~V~~~~~s~~g---~~la~g~~~~i~iw~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iw 85 (424)
.+.++-|-.-| ..++++++..|++|+.... +......+|..+|..+.+.|+...|+.+.-+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------------ 108 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGN------------ 108 (356)
T ss_dssp EEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECS------------
T ss_pred EEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeecc------------
Confidence 35566665544 3677899999999999888 55667778888999999999887777666331
Q ss_pred ECCCCcEEEEEeecCCeEEEEecCC----ceEEEe-eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEe-
Q psy3710 86 DDLKKQVVICLEFNAPVKGVRLRRD----KIVVVL-EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFP- 159 (424)
Q Consensus 86 d~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 159 (424)
+ +...|++++++|+ +..+++ ...+.+|++ ++++++.++
T Consensus 109 -~----------~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l-------------------------~~g~lv~ss~ 152 (356)
T 2w18_A 109 -L----------EIREIRALFCSSDDESEKQVLLKSGNIKAVLGL-------------------------TKRRLVSSSG 152 (356)
T ss_dssp -S----------SEEEEEEECC------CCEEEEEEEEEEEEEEE-------------------------TTTEEEEEES
T ss_pred -c----------cccceEEEEECCCccccccEEEeCCCeEEEEec-------------------------CCCcEEEecc
Confidence 1 2346889999999 888877 335666643 234444431
Q ss_pred eccCCeEEEEeCCCCCCCCcccccccCCeEEEEEcc---CCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCC
Q psy3710 160 GRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ---TGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSN 236 (424)
Q Consensus 160 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 236 (424)
.+.|+.|++|++....+.+..+..|...+..++|+| ++..|++++.|++ |++||++++++++++..+.
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~T-IkIWDl~TGk~l~tL~g~~-------- 223 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNN-IVIWNLKTGQLLKKMHIDD-------- 223 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSE-EEEEETTTCCEEEEEECCC--------
T ss_pred cCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCc-EEEEECCCCcEEEEEcCCC--------
Confidence 236889999998654366667789999999999999 7799999999999 9999999999998886430
Q ss_pred CCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCE------------EEEEeCCCcEEEEEECCCCce
Q psy3710 237 NSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTR------------LATASYKGTLIRVFDTGSGQK 304 (424)
Q Consensus 237 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------l~~~~~d~~~i~iwd~~~~~~ 304 (424)
.+...+.+++|+|+|++ +++|+.|++ |++||..+++.
T Consensus 224 ------------------------------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t-IklWd~~tgk~ 272 (356)
T 2w18_A 224 ------------------------------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ-LIVINPKTTLS 272 (356)
T ss_dssp ---------------------------------CCCEEEEEEETTEEEEEEC------------CCEE-EEEEETTTTEE
T ss_pred ------------------------------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE-EEEEECCCCEE
Confidence 11234555556665554 467889999 99999999998
Q ss_pred eeeec---cCCc------------EEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCC-ce
Q psy3710 305 LNELR---RDSS------------YLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDP-PC 368 (424)
Q Consensus 305 ~~~~~---~~~~------------~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 368 (424)
+..+. |+|. ++++++.|++|+|||+.+++++..+. .|... +.
T Consensus 273 l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~----------------------gH~~~vvs 330 (356)
T 2w18_A 273 VGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLP----------------------PVSDQHWS 330 (356)
T ss_dssp EEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEEC----------------------CC--CCCC
T ss_pred EEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEec----------------------CCCCCeEE
Confidence 77653 4443 57999999999999999988765533 23333 34
Q ss_pred EEEEecCCCeEEEEeccCcEEEEEe
Q psy3710 369 ICAFGADSNSIIVICADGSYYKFMF 393 (424)
Q Consensus 369 ~~~~s~~~~~l~~~~~dg~v~~~~~ 393 (424)
.++|+|||++|++|+.|++|++|++
T Consensus 331 ~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 331 FVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEECCCCCEEEEEECCCcEEEecC
Confidence 5899999999999999999999996
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=240.48 Aligned_cols=277 Identities=12% Similarity=0.095 Sum_probs=202.5
Q ss_pred ccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCC----cEEEEEe-ecCCeEEEEecC--CceEEEe---
Q psy3710 47 QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKK----QVVICLE-FNAPVKGVRLRR--DKIVVVL--- 116 (424)
Q Consensus 47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~----~~~~~~~-~~~~v~~~~~~~--~~~~~~~--- 116 (424)
...|.+.|.+++|+|+++++++++ .|+.|++||+.++ +....+. |...|.+++|+| ++.++++
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~ 79 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCS-------SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASY 79 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEE-------TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET
T ss_pred CcccccceeEEEEcCCCCEEEEee-------CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcC
Confidence 456899999999999999999988 6899999999876 3555665 889999999999 4655554
Q ss_pred eccEEEEeecCCC--------ceeEEEeeCCCCCeeEEEeecCC--CCeEEEeeccCCeEEEEeCCCCCCCCcccc----
Q psy3710 117 EGLIKVYTFIQCP--------QQLHVFETNPNPKGLCVLCPNSN--NSLLAFPGRKSGHVHLVDLADPERPPLDIA---- 182 (424)
Q Consensus 117 ~~~i~v~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~---- 182 (424)
|+.|++||+.... +.+..+..|. ..+.+++|+|+ +.++++ ++.||.|++||++++ .....+.
T Consensus 80 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~-~~~dg~v~iwd~~~~-~~~~~~~~~~~ 155 (351)
T 3f3f_A 80 DKTVKLWEEDPDQEECSGRRWNKLCTLNDSK--GSLYSVKFAPAHLGLKLAC-LGNDGILRLYDALEP-SDLRSWTLTSE 155 (351)
T ss_dssp TSCEEEEEECTTSCTTSSCSEEEEEEECCCS--SCEEEEEECCGGGCSEEEE-EETTCEEEEEECSST-TCTTCCEEEEE
T ss_pred CCeEEEEecCCCcccccccCcceeeeecccC--CceeEEEEcCCCCCcEEEE-ecCCCcEEEecCCCh-HHhcccccccc
Confidence 8999999996321 3455566555 45889999999 999998 999999999999876 4333332
Q ss_pred ---------cccCCeEEEEEccC---CCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeE
Q psy3710 183 ---------AHEAPLSCIALNQT---GTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHV 250 (424)
Q Consensus 183 ---------~~~~~v~~~~~~~~---~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i 250 (424)
.|...+.+++|+|+ +..+++++.++. +.+|+...++...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~---------------------------- 206 (351)
T 3f3f_A 156 MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA-IIYQRGKDGKLHV---------------------------- 206 (351)
T ss_dssp EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE-EEEEECTTSCEEE----------------------------
T ss_pred ccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc-EEEEccCCCceee----------------------------
Confidence 67889999999997 899999999998 8777776554321
Q ss_pred EEEeCCCCCCCCeeeccCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEEECCCCceeeeec------------cCCcE
Q psy3710 251 HLVDLADPERPPLDIAAHEAPLSCIALNQTG----TRLATASYKGTLIRVFDTGSGQKLNELR------------RDSSY 314 (424)
Q Consensus 251 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~~i~iwd~~~~~~~~~~~------------~~~~~ 314 (424)
...+.+|...|++++|+|++ ++|++++.|+. |++||++++....... +....
T Consensus 207 -----------~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (351)
T 3f3f_A 207 -----------AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR-IRIFKITEKLSPLASEESLTNSNMFDNSADVDM 274 (351)
T ss_dssp -----------EEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC-EEEEEEEECC-----------------------
T ss_pred -----------eeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe-EEEEeCCCCcCccccCCcccceeccCCCccccc
Confidence 11233789999999999998 89999999999 9999998765443321 11222
Q ss_pred EEEEe----CCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEE
Q psy3710 315 LCVSS----DHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYK 390 (424)
Q Consensus 315 l~~~~----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~ 390 (424)
+..+. ....+.+|+....+. +..+..|...++.++|+|++++|++++.||.|++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~i 332 (351)
T 3f3f_A 275 DAQGRSDSNTEEKAELQSNLQVEL----------------------LSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRL 332 (351)
T ss_dssp ----------------CCSEEEEE----------------------EEEECTTSSCEEEEEECSSSCCEEEEETTSCEEE
T ss_pred ccccccccccceeeeecccccccE----------------------EEEEecccccEEEEEEcCCCCEEEEecCCCcEEE
Confidence 22222 122233333322221 2335567788999999999999999999999999
Q ss_pred EEecCCc
Q psy3710 391 FMFNSKG 397 (424)
Q Consensus 391 ~~~~~~~ 397 (424)
|++..+.
T Consensus 333 w~~~~~~ 339 (351)
T 3f3f_A 333 WKATYSN 339 (351)
T ss_dssp EEECTTS
T ss_pred EecCcCc
Confidence 9998543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-32 Score=240.67 Aligned_cols=262 Identities=12% Similarity=0.193 Sum_probs=214.3
Q ss_pred ccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCc----EEEEEeecCCeEEEEecCCce-EEEe---ec
Q psy3710 47 QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ----VVICLEFNAPVKGVRLRRDKI-VVVL---EG 118 (424)
Q Consensus 47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~-~~~~---~~ 118 (424)
...|.+.|.+++|+|+++++++++ .|+.|++|++.+++ ......|...|.+++|+|++. ++++ ++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~-------~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 79 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITS-------WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG 79 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEE-------TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEc-------CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCC
Confidence 346789999999999999999888 58999999998887 555556899999999999988 6665 89
Q ss_pred cEEEEee-cCCCceeEEEee--CCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCC---------CCCCCcccccccC
Q psy3710 119 LIKVYTF-IQCPQQLHVFET--NPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLAD---------PERPPLDIAAHEA 186 (424)
Q Consensus 119 ~i~v~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~ 186 (424)
.|++||+ . ..+ ...+.. |. ..+.+++|+| +..+++ ++.|+.|++||+++ . +++..+. |..
T Consensus 80 ~i~~wd~~~-~~~-~~~~~~~~~~--~~v~~l~~~~-~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~-~~~ 151 (342)
T 1yfq_A 80 EILKVDLIG-SPS-FQALTNNEAN--LGICRICKYG-DDKLIA-ASWDGLIEVIDPRNYGDGVIAVKN-LNSNNTK-VKN 151 (342)
T ss_dssp CEEEECSSS-SSS-EEECBSCCCC--SCEEEEEEET-TTEEEE-EETTSEEEEECHHHHTTBCEEEEE-SCSSSSS-SCC
T ss_pred eEEEEEecc-CCc-eEeccccCCC--CceEEEEeCC-CCEEEE-EcCCCeEEEEcccccccccccccC-CeeeEEe-eCC
Confidence 9999998 6 433 355655 54 4588999999 888888 99999999999986 4 5555665 889
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEEECCC-ccee-eEE----ecceeeeeecC-CCCeEEEEeecCCeEEEEeCCCC-
Q psy3710 187 PLSCIALNQTGTRLATASYKGTLIRVFDTGS-GQKL-NEL----RRGLCVLCPNS-NNSLLAFPGRKSGHVHLVDLADP- 258 (424)
Q Consensus 187 ~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~-~~~~-~~~----~~~~~~~~~~~-~~~~~~~~~~~dg~i~i~d~~~~- 258 (424)
.|.+++|+|++ +++++.|+. |++||+++ +... ... ...+..++++| ++..+++ ++.+|.|++|+++..
T Consensus 152 ~v~~~~~~~~~--l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~-~~~dg~i~i~~~~~~~ 227 (342)
T 1yfq_A 152 KIFTMDTNSSR--LIVGMNNSQ-VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC-SSIDGRVAVEFFDDQG 227 (342)
T ss_dssp CEEEEEECSSE--EEEEESTTE-EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEE-EETTSEEEEEECCTTC
T ss_pred ceEEEEecCCc--EEEEeCCCe-EEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEE-EecCCcEEEEEEcCCC
Confidence 99999999987 999999999 99999988 5432 111 23477889999 7776655 889999999999887
Q ss_pred ----CCCCeeeccCCC---------CeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec-----------cCCcE
Q psy3710 259 ----ERPPLDIAAHEA---------PLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-----------RDSSY 314 (424)
Q Consensus 259 ----~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-----------~~~~~ 314 (424)
......+..|.. .|.+++|+|++++|++++.||. |++||+.+++.+..+. |++++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~ 306 (342)
T 1yfq_A 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQTRKKIKNFAKFNEDSVVKIACSDNI 306 (342)
T ss_dssp CSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTTTEEEEECCCCSSSEEEEEEECSSE
T ss_pred cccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce-EEEEcCccHhHhhhhhcccCCCceEecCCCCe
Confidence 355667777755 9999999999999999999999 9999999888776554 57889
Q ss_pred EEEEeCCCc-EEEEE
Q psy3710 315 LCVSSDHGT-VHVFS 328 (424)
Q Consensus 315 l~~~~~d~~-i~iw~ 328 (424)
|++++.||. .+.|.
T Consensus 307 l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 307 LCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEEECTHHHHCSS
T ss_pred EEEEecCCccccccc
Confidence 999999987 44444
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=263.75 Aligned_cols=258 Identities=12% Similarity=0.216 Sum_probs=206.2
Q ss_pred EEEeeCCCCCeeEEEeecCCC-CeEEEeeccCCeEEEEeCCCCCCC----CcccccccCCeEEEEEccCCCEEEEEecCC
Q psy3710 133 HVFETNPNPKGLCVLCPNSNN-SLLAFPGRKSGHVHLVDLADPERP----PLDIAAHEAPLSCIALNQTGTRLATASYKG 207 (424)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 207 (424)
..++.|... +.+++++|++ .+|++ |+.|+.|++||+...... ...+.+|...|.+++|+|++++|++++.|+
T Consensus 376 ~~l~~H~~~--V~~v~~~~~~~~~l~s-~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 376 GTMRAHTDM--VTAIATPIDNADIIVS-ASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEECCSSC--EEEEECCTTCCSEEEE-EETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred hhcccCCce--eEEEEecCCCCCEEEE-EeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 456677644 8889999876 55665 999999999999864222 346789999999999999999999999999
Q ss_pred cEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCC--CeeeccCCCCeEEEEEcCCC-
Q psy3710 208 TLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERP--PLDIAAHEAPLSCIALNQTG- 281 (424)
Q Consensus 208 ~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~- 281 (424)
. |++||+.+++....+..| +..++++|++..++ +++.|++|++||....... .....+|...|.+++|+|++
T Consensus 453 ~-v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 530 (694)
T 3dm0_A 453 E-LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIV-SASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL 530 (694)
T ss_dssp E-EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEE-EEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred c-EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEE-EEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence 9 999999999998888765 77889999988765 4999999999998654211 11224788999999999987
Q ss_pred -CEEEEEeCCCcEEEEEECCCCceeee------------eccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccC
Q psy3710 282 -TRLATASYKGTLIRVFDTGSGQKLNE------------LRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLP 348 (424)
Q Consensus 282 -~~l~~~~~d~~~i~iwd~~~~~~~~~------------~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 348 (424)
..|++++.|+. |++||+++++.... ++|++++|++++.||.|++||+.+++++....
T Consensus 531 ~~~l~s~s~d~~-v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~--------- 600 (694)
T 3dm0_A 531 QPTIVSASWDKT-VKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE--------- 600 (694)
T ss_dssp SCEEEEEETTSC-EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB---------
T ss_pred cceEEEEeCCCe-EEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec---------
Confidence 58999999999 99999998877654 56899999999999999999999987654321
Q ss_pred ccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCCcceeeee------------------------e
Q psy3710 349 KYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWRDV------------------------Y 404 (424)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~~~~~------------------------~ 404 (424)
+...+..++|+|++.+|++++ |+.|++|++. .+++++.. +
T Consensus 601 --------------~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (694)
T 3dm0_A 601 --------------ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLE-SKSIVEDLKVDLKAEAEKADNSGPAATKRKVIY 664 (694)
T ss_dssp --------------CSSCEEEEEECSSSSEEEEEE-TTEEEEEETT-TTEEEEEECCCCC----------------CCCC
T ss_pred --------------CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECC-CCCChhhhccccccccccccccccccCCceeEE
Confidence 124577899999998877665 6669999997 44443321 1
Q ss_pred hhhheecCCCceeeEEE
Q psy3710 405 IQFLEMTNDSNLLSCIE 421 (424)
Q Consensus 405 ~~~~~~~~d~~~l~~~~ 421 (424)
...+.++|||++|+++.
T Consensus 665 ~~~l~~spdg~~l~sgs 681 (694)
T 3dm0_A 665 CTSLNWSADGSTLFSGY 681 (694)
T ss_dssp EEEEEECTTSSEEEEEE
T ss_pred eeeEEEcCCCCEEEEEc
Confidence 23567999999999874
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=251.36 Aligned_cols=277 Identities=9% Similarity=0.074 Sum_probs=215.5
Q ss_pred cCCceEEEEECCCCCeeEeecCCeEEEEeCCcCc---cccccc-------------------------------------
Q psy3710 9 YKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLK---EKERQD------------------------------------- 48 (424)
Q Consensus 9 h~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~---~~~~~~------------------------------------- 48 (424)
...++.+++|+|+|++|+++.++.|++||+.+++ .+....
T Consensus 3 ~~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 3 VIHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp EECCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3467999999999998888877779999998887 321111
Q ss_pred -----------------ccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECC--CCcEEEEEe---ecCCeEEEE
Q psy3710 49 -----------------FTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL--KKQVVICLE---FNAPVKGVR 106 (424)
Q Consensus 49 -----------------~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~--~~~~~~~~~---~~~~v~~~~ 106 (424)
.|.+.|.+++|+|++++|+++++ .|+.|++||+. +++.+..+. +...|.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 156 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACAD------SDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAIS 156 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEG------GGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEE
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEEC------CCCeEEEEECcCCCCceeeeeecccCCCCceEEE
Confidence 12336999999999999744443 47999999999 888888774 568899999
Q ss_pred ecCCceEEEe---eccEEEEeecCCCcee----EEEeeCCCCCeeEEEeecCC---CCeEEEeeccCCeEEEEeCCCCCC
Q psy3710 107 LRRDKIVVVL---EGLIKVYTFIQCPQQL----HVFETNPNPKGLCVLCPNSN---NSLLAFPGRKSGHVHLVDLADPER 176 (424)
Q Consensus 107 ~~~~~~~~~~---~~~i~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~dg~i~i~d~~~~~~ 176 (424)
|+|++..+++ ++.+++|++. ..... ..+..|.. .+.+++|+|+ +++|++ |+.|+.|++||+.++ .
T Consensus 157 ~sp~~~~l~~~~~~g~v~~~~~~-~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~~~~l~s-~~~d~~i~vwd~~~~-~ 231 (450)
T 2vdu_B 157 IAEDDTTVIIADKFGDVYSIDIN-SIPEEKFTQEPILGHVS--MLTDVHLIKDSDGHQFIIT-SDRDEHIKISHYPQC-F 231 (450)
T ss_dssp ECTTSSEEEEEETTSEEEEEETT-SCCCSSCCCCCSEECSS--CEEEEEEEECTTSCEEEEE-EETTSCEEEEEESCT-T
T ss_pred EcCCCCEEEEEeCCCcEEEEecC-CcccccccceeeecccC--ceEEEEEcCCCCCCcEEEE-EcCCCcEEEEECCCC-c
Confidence 9999977765 6889999986 44332 25666664 4888999999 888887 999999999999986 4
Q ss_pred CCcc-cccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEec----------------------------c
Q psy3710 177 PPLD-IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR----------------------------G 227 (424)
Q Consensus 177 ~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~----------------------------~ 227 (424)
.+.. +.+|...|.+++|+ ++++|++++.|+. |++||+++++.+..+.. .
T Consensus 232 ~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 232 IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDK-IFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp CEEEECCCCSSCEEEEEEC-STTEEEEEESSSE-EEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCe-EEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 5544 66899999999999 9999999999999 99999999998877752 2
Q ss_pred eeeeeecCCCCeEEEEeecCCeEEEEeC--CCCC--CCCeeeccCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEE
Q psy3710 228 LCVLCPNSNNSLLAFPGRKSGHVHLVDL--ADPE--RPPLDIAAHEAPLSCIALNQTGTRLATASY------KGTLIRVF 297 (424)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~dg~i~i~d~--~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~~i~iw 297 (424)
+..++++|++..+++++..++.|++|++ .... .....+..| ..|.+++|+|++.++++++. +.. |.+|
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~-i~v~ 387 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNF-AKFI 387 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCS-EEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcc-eEEE
Confidence 5567889988888875558999999999 4332 233455666 88999999996544444443 344 6777
Q ss_pred ECC
Q psy3710 298 DTG 300 (424)
Q Consensus 298 d~~ 300 (424)
.+.
T Consensus 388 ~~~ 390 (450)
T 2vdu_B 388 EYN 390 (450)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=244.10 Aligned_cols=273 Identities=11% Similarity=0.080 Sum_probs=211.9
Q ss_pred CCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCc---EEEEEee------------------------------
Q psy3710 52 GGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ---VVICLEF------------------------------ 98 (424)
Q Consensus 52 ~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~---~~~~~~~------------------------------ 98 (424)
.++.+++|++++++++++. ++.|++||+.+|+ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~--------~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII--------KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKL 76 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE--------TTEEEEEEEETTTEEEEEEEEECCC----------------------------
T ss_pred ccEEEEEecCCCCEEEEEe--------CCeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccccccccc
Confidence 4678899999999666665 6899999999998 5555441
Q ss_pred -------------------------cCCeEEEEecCCceEE-Ee---eccEEEEeecC-CCceeEEEeeCCCCCeeEEEe
Q psy3710 99 -------------------------NAPVKGVRLRRDKIVV-VL---EGLIKVYTFIQ-CPQQLHVFETNPNPKGLCVLC 148 (424)
Q Consensus 99 -------------------------~~~v~~~~~~~~~~~~-~~---~~~i~v~~~~~-~~~~~~~~~~~~~~~~~~~~~ 148 (424)
...|.+++|+|++..+ ++ |+.|++||+.. .++.+..+..+..+..+.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 156 (450)
T 2vdu_B 77 KSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAIS 156 (450)
T ss_dssp -----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEE
T ss_pred ccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEE
Confidence 1159999999999775 54 79999999962 466777776555556689999
Q ss_pred ecCCCCeEEEeeccCCeEEEEeCCCCCC---CCcccccccCCeEEEEEccC---CCEEEEEecCCcEEEEEECCCcceee
Q psy3710 149 PNSNNSLLAFPGRKSGHVHLVDLADPER---PPLDIAAHEAPLSCIALNQT---GTRLATASYKGTLIRVFDTGSGQKLN 222 (424)
Q Consensus 149 ~~~~~~~l~~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~~i~iwd~~~~~~~~ 222 (424)
|+|++++|++ |+.+|.|++|++.+... ....+.+|...|.+++|+|+ +++|++++.|+. |++||+++++.+.
T Consensus 157 ~sp~~~~l~~-~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~-i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDTTVII-ADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH-IKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSSEEEE-EETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC-EEEEEESCTTCEE
T ss_pred EcCCCCEEEE-EeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc-EEEEECCCCceee
Confidence 9999999998 99999999999987622 22377889999999999999 999999999999 9999998776544
Q ss_pred EEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCC
Q psy3710 223 ELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG 302 (424)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~ 302 (424)
.+ +.+|...|.+++|+ ++++|++++.|+. |++||++++
T Consensus 235 ~~----------------------------------------~~~h~~~v~~~~~s-d~~~l~s~~~d~~-v~vwd~~~~ 272 (450)
T 2vdu_B 235 KW----------------------------------------LFGHKHFVSSICCG-KDYLLLSAGGDDK-IFAWDWKTG 272 (450)
T ss_dssp EE----------------------------------------CCCCSSCEEEEEEC-STTEEEEEESSSE-EEEEETTTC
T ss_pred ee----------------------------------------ecCCCCceEEEEEC-CCCEEEEEeCCCe-EEEEECCCC
Confidence 32 12688899999999 9999999999999 999999988
Q ss_pred ceeeeec-------------------------------------cCCcEEEEEe-CCCcEEEEEc--cccccccccccce
Q psy3710 303 QKLNELR-------------------------------------RDSSYLCVSS-DHGTVHVFSV--DEAQKINKQSSLA 342 (424)
Q Consensus 303 ~~~~~~~-------------------------------------~~~~~l~~~~-~d~~i~iw~~--~~~~~~~~~~~~~ 342 (424)
+++..+. |++++|++++ .|+.|++|++ .++..+..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~----- 347 (450)
T 2vdu_B 273 KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLAL----- 347 (450)
T ss_dssp CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEE-----
T ss_pred cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceee-----
Confidence 8665543 4588999988 8999999999 44322111
Q ss_pred eeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEec------cCcEEEEEecCC
Q psy3710 343 SASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICA------DGSYYKFMFNSK 396 (424)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------dg~v~~~~~~~~ 396 (424)
...+..+ +.+..++|+|++.++++++. +..|.+|.++..
T Consensus 348 --------------~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 348 --------------KQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp --------------EEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred --------------ccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 1123344 67889999996544444343 556899998764
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-31 Score=242.63 Aligned_cols=348 Identities=12% Similarity=0.071 Sum_probs=247.7
Q ss_pred cccCCceEEEEECCCCCeeEeecCCe--EEEEeCCcCcccccccccCCCeeeEE---EeccCceEEEEeCCcCC------
Q psy3710 7 STYKNGLLYAGFNQDQGCFACGMEDG--FRIYNCDPLKEKERQDFTDGGLGHVE---MLFRCNYLALVGGGTHP------ 75 (424)
Q Consensus 7 ~~h~~~V~~~~~s~~g~~la~g~~~~--i~iw~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~l~~~~~~~~~------ 75 (424)
......|..+.|+|....++...... .+++.... ...+..++ |+++++.++.++.....
T Consensus 24 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 93 (433)
T 3bws_A 24 EKNGTEIVKFSIHPYKGTVIRLGEEILPFKVLEMDK----------NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRI 93 (433)
T ss_dssp ---CEEEEEEEEECCTTCEEEETTEECCEEEEEEET----------TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEE
T ss_pred ccCCcEEEEEecccccCceEEcCceecceeeeeccc----------CCccEEEEEeeccCCCcEEEEEEccccCcceeee
Confidence 34555677788888654444333222 34433221 12233444 55555555444322100
Q ss_pred -CcCCC--eEEEEECCCC--cEEEEEeecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEee---CCCCCee
Q psy3710 76 -KYPNN--RVMIWDDLKK--QVVICLEFNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFET---NPNPKGL 144 (424)
Q Consensus 76 -~~~d~--~i~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~---~~~~~~~ 144 (424)
...++ .|..+|..++ +.+..+.....+.+++|+|++.++++ ++.|++||+. +++....... ..+...+
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~v 172 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDIN-SGQTVRLSPPEKYKKKLGFV 172 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETT-TCCEEEECCCHHHHTTCCEE
T ss_pred cccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECC-CCeEeeecCcccccccCCce
Confidence 00234 5555555445 55666666677789999998777765 6789999996 5665553221 1223458
Q ss_pred EEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEE-ecCCcEEEEEECCCcceeeE
Q psy3710 145 CVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATA-SYKGTLIRVFDTGSGQKLNE 223 (424)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~~i~iwd~~~~~~~~~ 223 (424)
.++++++++.++++ ++.|+.|++||++++ +....+..|...+.+++|+|+++.++++ +.++. |++||+++++.+..
T Consensus 173 ~~~~~~~~~~~~~s-~~~d~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-i~~~d~~~~~~~~~ 249 (433)
T 3bws_A 173 ETISIPEHNELWVS-QMQANAVHVFDLKTL-AYKATVDLTGKWSKILLYDPIRDLVYCSNWISED-ISVIDRKTKLEIRK 249 (433)
T ss_dssp EEEEEGGGTEEEEE-EGGGTEEEEEETTTC-CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTE-EEEEETTTTEEEEE
T ss_pred eEEEEcCCCEEEEE-ECCCCEEEEEECCCc-eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCc-EEEEECCCCcEEEE
Confidence 88899999988887 999999999999876 6667777899999999999999988554 47898 99999999988877
Q ss_pred Eecc--eeeeeecCCCCeEEEEee-------cCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEE-EEEeCCCcE
Q psy3710 224 LRRG--LCVLCPNSNNSLLAFPGR-------KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRL-ATASYKGTL 293 (424)
Q Consensus 224 ~~~~--~~~~~~~~~~~~~~~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~~ 293 (424)
+..+ +..++++|++..+++++. .|+.|++||+.+++. .. ...|...+.+++|+|+++.+ ++++.++.
T Consensus 250 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~-~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~- 326 (433)
T 3bws_A 250 TDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL-ID-TIGPPGNKRHIVSGNTENKIYVSDMCCSK- 326 (433)
T ss_dssp CCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE-EE-EEEEEECEEEEEECSSTTEEEEEETTTTE-
T ss_pred ecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE-Ee-eccCCCCcceEEECCCCCEEEEEecCCCE-
Confidence 7644 677899999998888554 578999999987653 22 22566689999999999755 56688999
Q ss_pred EEEEECCCCceeee-----------eccCCcEEEEEeC---------------CCcEEEEEccccccccccccceeeecc
Q psy3710 294 IRVFDTGSGQKLNE-----------LRRDSSYLCVSSD---------------HGTVHVFSVDEAQKINKQSSLASASFL 347 (424)
Q Consensus 294 i~iwd~~~~~~~~~-----------~~~~~~~l~~~~~---------------d~~i~iw~~~~~~~~~~~~~~~~~~~~ 347 (424)
|++||+.+++.+.. ++|+++++++++. ||.|++||+.+++.+....
T Consensus 327 v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~-------- 398 (433)
T 3bws_A 327 IEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE-------- 398 (433)
T ss_dssp EEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE--------
T ss_pred EEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec--------
Confidence 99999999877654 4688998888876 5799999999876543321
Q ss_pred CccccCCceeeEEeecCCCceEEEEecCCCeEEEEec-cCcEEEEEec
Q psy3710 348 PKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICA-DGSYYKFMFN 394 (424)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~~~~~~ 394 (424)
. ...+..++|+|++++|++++. |+.|++|+++
T Consensus 399 --------------~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 399 --------------A-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp --------------C-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred --------------C-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 1 234678999999999998875 9999999986
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=274.72 Aligned_cols=253 Identities=14% Similarity=0.136 Sum_probs=202.0
Q ss_pred ccccccCCceEEEEECCCCCeeEeecCCe-EEEEeCC--cCcccccccccCCCeeeEEEecc--CceEEEEeCCcCCCcC
Q psy3710 4 GTSSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCD--PLKEKERQDFTDGGLGHVEMLFR--CNYLALVGGGTHPKYP 78 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~--~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~~~~~ 78 (424)
..+.+|.+.|++++|+|+|++|++|+.++ |++||+. +.+.......|.+.|.+++|+++ ++.+++++ .
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s-------~ 75 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS-------Y 75 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEE-------T
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEe-------C
Confidence 45789999999999999999999999888 9999987 44445556678999999999988 88898888 6
Q ss_pred CCeEEEEECCCCc--EEEEEe-ecCCeEEEEecCC--ceEEEe---eccEEEEeecCCC-ceeEEEeeCCCCCeeEEEee
Q psy3710 79 NNRVMIWDDLKKQ--VVICLE-FNAPVKGVRLRRD--KIVVVL---EGLIKVYTFIQCP-QQLHVFETNPNPKGLCVLCP 149 (424)
Q Consensus 79 d~~i~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~---~~~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 149 (424)
|+.|++||+.+++ .+..+. |...|.+++|+|+ +..+++ ||.|++||++... .....+..+. ..+.++.|
T Consensus 76 Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~--~~v~~l~~ 153 (753)
T 3jro_A 76 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA--IGVNSASW 153 (753)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCS--SCEEEEEE
T ss_pred CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCC--CceEEEEe
Confidence 8999999999886 455555 7899999999998 766654 8999999997331 2333444444 55889999
Q ss_pred cC-------------CCCeEEEeeccCCeEEEEeCCCCC---CCCcccccccCCeEEEEEccC---CCEEEEEecCCcEE
Q psy3710 150 NS-------------NNSLLAFPGRKSGHVHLVDLADPE---RPPLDIAAHEAPLSCIALNQT---GTRLATASYKGTLI 210 (424)
Q Consensus 150 ~~-------------~~~~l~~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~~i 210 (424)
+| ++..+++ |+.||.|++||++++. .....+.+|...|.+++|+|+ ++++++++.|+. |
T Consensus 154 ~p~~~~~~~~~~~~~d~~~l~s-gs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~-I 231 (753)
T 3jro_A 154 APATIEEDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-C 231 (753)
T ss_dssp CCCC---------CGGGCCEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC-E
T ss_pred cCcccccccccccCCCCCEEEE-EECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE-E
Confidence 99 5888888 9999999999998753 233466789999999999999 899999999999 9
Q ss_pred EEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCC
Q psy3710 211 RVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK 290 (424)
Q Consensus 211 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 290 (424)
++||+++++..... .......|...|++++|+|+|++|++++.|
T Consensus 232 ~iwd~~~~~~~~~~------------------------------------~~~~~~~~~~~v~~l~~spdg~~l~s~s~D 275 (753)
T 3jro_A 232 IIWTQDNEQGPWKK------------------------------------TLLKEEKFPDVLWRASWSLSGNVLALSGGD 275 (753)
T ss_dssp EEEEESSSSSCCBC------------------------------------CBSSSSCCSSCCCCEEECTTTCCEEEECSS
T ss_pred EEecCCCCCCccee------------------------------------EEeccCCCCCceEEEEEcCCCCEEEEEcCC
Confidence 99999875421100 112223688899999999999999999999
Q ss_pred CcEEEEEECCCCce
Q psy3710 291 GTLIRVFDTGSGQK 304 (424)
Q Consensus 291 ~~~i~iwd~~~~~~ 304 (424)
|. |++|++.++..
T Consensus 276 g~-I~vwd~~~~~~ 288 (753)
T 3jro_A 276 NK-VTLWKENLEGK 288 (753)
T ss_dssp SC-EECCBCCSSSC
T ss_pred CE-EEEEecCCCCC
Confidence 99 99999986543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=245.24 Aligned_cols=243 Identities=15% Similarity=0.205 Sum_probs=195.3
Q ss_pred eeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCC-CCCCcccccccCCeEEEEEccC--CCEEEEEecCC
Q psy3710 131 QLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADP-ERPPLDIAAHEAPLSCIALNQT--GTRLATASYKG 207 (424)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~ 207 (424)
.+..+.+|..+ +.+++|+|++++|++ |+.||.|++||+... ......+.+|...|.+++|+|+ +++|++++.|+
T Consensus 3 ~~~~~~~h~~~--v~~~~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 3 MVVIANAHNEL--IHDAVLDYYGKRLAT-CSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp --CCEEECCCC--EEEEEECSSSSEEEE-EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ccEEecCCccc--EEEEEEcCCCCEEEE-EECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 45567777755 889999999999998 999999999999732 1455678899999999999987 89999999999
Q ss_pred cEEEEEECCCcc--eeeEEec---ceeeeeecCCC-CeEEEEeecCCeEEEEeCCCCCC-CCeeeccCCCCeEEEEEcC-
Q psy3710 208 TLIRVFDTGSGQ--KLNELRR---GLCVLCPNSNN-SLLAFPGRKSGHVHLVDLADPER-PPLDIAAHEAPLSCIALNQ- 279 (424)
Q Consensus 208 ~~i~iwd~~~~~--~~~~~~~---~~~~~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~- 279 (424)
. |++||+++++ .+..+.. .+..++++|+. ..++++++.|+.|++||++.... ....+..|...|.+++|+|
T Consensus 80 ~-v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (379)
T 3jrp_A 80 K-VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 158 (379)
T ss_dssp C-EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred E-EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence 9 9999999886 5555543 37888999983 34455599999999999998753 3345678999999999999
Q ss_pred ------------CCCEEEEEeCCCcEEEEEECCCCcee----e------------eeccC---CcEEEEEeCCCcEEEEE
Q psy3710 280 ------------TGTRLATASYKGTLIRVFDTGSGQKL----N------------ELRRD---SSYLCVSSDHGTVHVFS 328 (424)
Q Consensus 280 ------------~~~~l~~~~~d~~~i~iwd~~~~~~~----~------------~~~~~---~~~l~~~~~d~~i~iw~ 328 (424)
++.+|++++.|+. |++||+++++.. . .|+|+ +++|++++.||.|++||
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp C----------CTTCEEEEEETTSC-EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccccccccCCCCCCEEEEEeCCCe-EEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 6999999999999 999999876422 1 25688 89999999999999999
Q ss_pred ccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecC
Q psy3710 329 VDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~ 395 (424)
+.+++....... .....+...+..++|+|++++|++++.||.|++|++..
T Consensus 238 ~~~~~~~~~~~~-----------------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 238 QDNEQGPWKKTL-----------------LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp ESSTTSCCEEEE-----------------SSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCCCCccceeee-----------------eccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 988642111000 00112456788999999999999999999999999974
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=237.36 Aligned_cols=261 Identities=14% Similarity=0.076 Sum_probs=200.6
Q ss_pred ccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCc--EEEEEe-ecCCeEEEEecCCceEEEe---eccE
Q psy3710 47 QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ--VVICLE-FNAPVKGVRLRRDKIVVVL---EGLI 120 (424)
Q Consensus 47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i 120 (424)
+..|.++|.+++|+|+++++++++ .|+.|++||+.+++ .+..+. |...|.+++|+|++.++++ |+.|
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~-------~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i 76 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICP-------NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNA 76 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEEC-------SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred ecccCCCeEEEEECCCCCEEEEEe-------CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeE
Confidence 445788999999999999998887 58999999999887 777777 8899999999999977765 8999
Q ss_pred EEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCC---CCcccccccCCeEEEEEccCC
Q psy3710 121 KVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER---PPLDIAAHEAPLSCIALNQTG 197 (424)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~ 197 (424)
++||+. ..+....+....+...+.+++|+|+++++++ ++.||.|++||++.... .......|...|.+++|+|++
T Consensus 77 ~vwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 154 (372)
T 1k8k_C 77 YVWTLK-GRTWKPTLVILRINRAARCVRWAPNEKKFAV-GSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 154 (372)
T ss_dssp EEEEEE-TTEEEEEEECCCCSSCEEEEEECTTSSEEEE-EETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred EEEECC-CCeeeeeEEeecCCCceeEEEECCCCCEEEE-EeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC
Confidence 999996 5555555444344456899999999999998 99999999999997532 122336789999999999999
Q ss_pred CEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCC-CCCCCCeeeccCCCCeEEEE
Q psy3710 198 TRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLA-DPERPPLDIAAHEAPLSCIA 276 (424)
Q Consensus 198 ~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~~~ 276 (424)
++|++++.|+. |++||++.......... ..|..+ ........+..|...|.+++
T Consensus 155 ~~l~~~~~dg~-i~~~d~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~ 209 (372)
T 1k8k_C 155 VLLAAGSCDFK-CRIFSAYIKEVEERPAP------------------------TPWGSKMPFGELMFESSSSCGWVHGVC 209 (372)
T ss_dssp SEEEEEETTSC-EEEEECCCTTTSCCCCC------------------------BTTBSCCCTTCEEEECCCCSSCEEEEE
T ss_pred CEEEEEcCCCC-EEEEEcccccccccccc------------------------cccccccchhhheEecCCCCCeEEEEE
Confidence 99999999999 99999865432111000 000000 00112334457899999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEECCCCceeeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCce
Q psy3710 277 LNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWS 356 (424)
Q Consensus 277 ~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (424)
|+|++++|++++.|+. |++||+++++.+..+.
T Consensus 210 ~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~----------------------------------------------- 241 (372)
T 1k8k_C 210 FSANGSRVAWVSHDST-VCLADADKKMAVATLA----------------------------------------------- 241 (372)
T ss_dssp ECSSSSEEEEEETTTE-EEEEEGGGTTEEEEEE-----------------------------------------------
T ss_pred ECCCCCEEEEEeCCCE-EEEEECCCCceeEEEc-----------------------------------------------
Confidence 9999999999999988 8888887655433321
Q ss_pred eeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecC
Q psy3710 357 FCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 357 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~ 395 (424)
.|..++..++|+|++++|+++ .||.|++|++..
T Consensus 242 -----~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 242 -----SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp -----CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred -----cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 123456788999999988877 899999999985
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=242.87 Aligned_cols=306 Identities=13% Similarity=0.089 Sum_probs=234.6
Q ss_pred cCCceEEEE---ECCCCCeeEee--------------cCCe-EEEEeCCc--C--cccccccccCCCeeeEEEeccCceE
Q psy3710 9 YKNGLLYAG---FNQDQGCFACG--------------MEDG-FRIYNCDP--L--KEKERQDFTDGGLGHVEMLFRCNYL 66 (424)
Q Consensus 9 h~~~V~~~~---~s~~g~~la~g--------------~~~~-i~iw~~~~--~--~~~~~~~~~~~~i~~~~~~~~~~~l 66 (424)
....+..++ |+|++..+++. ..++ +.||.++. + +....... ...+.+++|+| +..+
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~-~~~~ 136 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKT-GFQPKSVRFID-NTRL 136 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEEC-SSCBCCCEESS-SSEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcC-CCCceEEEEeC-CCeE
Confidence 345677888 88887766532 1222 35555544 3 22222222 34466899999 4444
Q ss_pred EEEeCCcCCCcCCCeEEEEECCCCcEEEEEe------ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEee
Q psy3710 67 ALVGGGTHPKYPNNRVMIWDDLKKQVVICLE------FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFET 137 (424)
Q Consensus 67 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~ 137 (424)
++++. .++.|++||+.+++.+..+. |...+.+++|++++.++++ ++.|++||++ +++.+..+..
T Consensus 137 ~~~~~------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~-~~~~~~~~~~ 209 (433)
T 3bws_A 137 AIPLL------EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLK-TLAYKATVDL 209 (433)
T ss_dssp EEEBT------TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETT-TCCEEEEEEC
T ss_pred EEEeC------CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECC-CceEEEEEcC
Confidence 44443 36899999999999887432 4568999999999987776 7899999996 6777777775
Q ss_pred CCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEe--------cCCcE
Q psy3710 138 NPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS--------YKGTL 209 (424)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~d~~~ 209 (424)
+. ..+.+++++|+++.++++++.++.|++||++++ +....+.. ...+.+++|+|+++.+++++ .|+.
T Consensus 210 ~~--~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~-~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~- 284 (433)
T 3bws_A 210 TG--KWSKILLYDPIRDLVYCSNWISEDISVIDRKTK-LEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGR- 284 (433)
T ss_dssp SS--SSEEEEEEETTTTEEEEEETTTTEEEEEETTTT-EEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEE-
T ss_pred CC--CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC-cEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCe-
Confidence 55 447889999999998775778999999999875 44444544 45589999999999999988 4788
Q ss_pred EEEEECCCcceeeEEe--cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEE
Q psy3710 210 IRVFDTGSGQKLNELR--RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATA 287 (424)
Q Consensus 210 i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 287 (424)
|++||+++++.+..+. .....++++|+++.++++++.++.|++||+.+++. ...+ .+...+.+++|+|++++++++
T Consensus 285 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~-~~~~-~~~~~~~~~~~s~dg~~l~~~ 362 (433)
T 3bws_A 285 LGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV-QKSI-PVFDKPNTIALSPDGKYLYVS 362 (433)
T ss_dssp EEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE-EEEE-ECSSSEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE-EEEe-cCCCCCCeEEEcCCCCEEEEE
Confidence 9999999998777663 45677899999999999899999999999987653 3333 477889999999999999888
Q ss_pred eC---------------CCcEEEEEECCCCceeee-----------eccCCcEEEEEeC-CCcEEEEEccc
Q psy3710 288 SY---------------KGTLIRVFDTGSGQKLNE-----------LRRDSSYLCVSSD-HGTVHVFSVDE 331 (424)
Q Consensus 288 ~~---------------d~~~i~iwd~~~~~~~~~-----------~~~~~~~l~~~~~-d~~i~iw~~~~ 331 (424)
+. ||. |++||+.+++.+.. ++|++++|++++. |+.|++|+++.
T Consensus 363 ~~~~~~~~~~~~~~g~~dg~-v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 363 CRGPNHPTEGYLKKGLVLGK-VYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp ECCCCCTTTCTTSCCSSCCE-EEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ecCCCccccccccccccceE-EEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 87 468 99999999887664 5689999988875 99999999864
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-32 Score=243.48 Aligned_cols=265 Identities=12% Similarity=0.176 Sum_probs=210.6
Q ss_pred eEEEEecCCceEEEe----eccEEEEeecCCCc---eeEEEeeCCCCCeeEEEeecC-CCCeEEEeeccCCeEEEEeCCC
Q psy3710 102 VKGVRLRRDKIVVVL----EGLIKVYTFIQCPQ---QLHVFETNPNPKGLCVLCPNS-NNSLLAFPGRKSGHVHLVDLAD 173 (424)
Q Consensus 102 v~~~~~~~~~~~~~~----~~~i~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~dg~i~i~d~~~ 173 (424)
...++++|+...++. +|.|++|++...++ ....+..|. ..+.+++|+| ++++|++ |+.||.|++||+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~--~~V~~~~~~p~~~~~l~s-~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHT--APVLDIAWCPHNDNVIAS-GSEDCTVMVWEIPD 113 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCS--SCEEEEEECTTCTTEEEE-EETTSEEEEEECCT
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCC--CCEEEEEeCCCCCCEEEE-EeCCCeEEEEEccC
Confidence 345788888866642 89999999864332 333455565 4589999999 8888888 99999999999987
Q ss_pred CC------CCCcccccccCCeEEEEEccCC-CEEEEEecCCcEEEEEECCCcceeeEE--ec---ceeeeeecCCCCeEE
Q psy3710 174 PE------RPPLDIAAHEAPLSCIALNQTG-TRLATASYKGTLIRVFDTGSGQKLNEL--RR---GLCVLCPNSNNSLLA 241 (424)
Q Consensus 174 ~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~~i~iwd~~~~~~~~~~--~~---~~~~~~~~~~~~~~~ 241 (424)
+. .+...+.+|...|.+++|+|++ ++|++++.|+. |++||+++++.+..+ .. .+..++++|++..++
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV-ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC-EEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE-EEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 63 4567788999999999999998 69999999999 999999999998888 33 378899999887666
Q ss_pred EEeecCCeEEEEeCCCCCCCCeee-ccCCCC-eEEEEEcCCCCEEEEE---eCCCcEEEEEECCCCce-ee---------
Q psy3710 242 FPGRKSGHVHLVDLADPERPPLDI-AAHEAP-LSCIALNQTGTRLATA---SYKGTLIRVFDTGSGQK-LN--------- 306 (424)
Q Consensus 242 ~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~~~---~~d~~~i~iwd~~~~~~-~~--------- 306 (424)
. ++.|+.|++||+++++. ...+ ..|.+. +.+++|+|++++|+++ +.|+. |++||+++++. +.
T Consensus 193 ~-~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~ 269 (402)
T 2aq5_A 193 T-SCRDKRVRVIEPRKGTV-VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQ-VALWDTKHLEEPLSLQELDTSSG 269 (402)
T ss_dssp E-EETTSEEEEEETTTTEE-EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEE-EEEEETTBCSSCSEEEECCCCSS
T ss_pred E-EecCCcEEEEeCCCCce-eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCce-EEEEcCccccCCceEEeccCCCc
Confidence 5 88999999999998764 3444 577766 8999999999999999 78999 99999988654 11
Q ss_pred ----eeccCCcEEEE-EeCCCcEEEEEcccccc-ccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEE
Q psy3710 307 ----ELRRDSSYLCV-SSDHGTVHVFSVDEAQK-INKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSII 380 (424)
Q Consensus 307 ----~~~~~~~~l~~-~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 380 (424)
.|+|++++|++ ++.|+.|++||+.+++. +.... .+. +.+++..++|+|++.+++
T Consensus 270 v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~-------------------~~~-~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 270 VLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS-------------------MFS-SKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp CEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE-------------------EEC-CSSCCSEEEECCGGGSCG
T ss_pred eeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec-------------------ccc-cCCcccceEEecccccce
Confidence 25689998865 55799999999998663 21111 111 456788999999999876
Q ss_pred EEeccCcEEEEEecC
Q psy3710 381 VICADGSYYKFMFNS 395 (424)
Q Consensus 381 ~~~~dg~v~~~~~~~ 395 (424)
+ .++.+++|++..
T Consensus 330 s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 330 N--KCEIARFYKLHE 342 (402)
T ss_dssp G--GTEEEEEEEEET
T ss_pred e--cceeEEEEEcCC
Confidence 4 577999999984
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=243.88 Aligned_cols=260 Identities=13% Similarity=0.133 Sum_probs=201.2
Q ss_pred cccccCCceEEEEECCC-CCeeEeecCCe-EEEEeCCc----------CcccccccccCCCeeeEEEeccCc-eEEEEeC
Q psy3710 5 TSSTYKNGLLYAGFNQD-QGCFACGMEDG-FRIYNCDP----------LKEKERQDFTDGGLGHVEMLFRCN-YLALVGG 71 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~-g~~la~g~~~~-i~iw~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~ 71 (424)
.+.+|.+.|++++|+|+ +.+||+++.++ |++|++.+ .+.......|...+.+++|+|++. .+++++
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~- 201 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS- 201 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC-
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe-
Confidence 46789999999999998 68899999888 99999976 344555566889999999999998 666665
Q ss_pred CcCCCcCCCeEEEEECCCCc----E---EEEEe-ecCCeEEEEecC-CceEEEe---eccEEEEeecCCC--ceeEEEee
Q psy3710 72 GTHPKYPNNRVMIWDDLKKQ----V---VICLE-FNAPVKGVRLRR-DKIVVVL---EGLIKVYTFIQCP--QQLHVFET 137 (424)
Q Consensus 72 ~~~~~~~d~~i~iwd~~~~~----~---~~~~~-~~~~v~~~~~~~-~~~~~~~---~~~i~v~~~~~~~--~~~~~~~~ 137 (424)
.|+.|++|++.++. . ...+. |...|.+++|+| ++.++++ ++.|++||++... +.+..+..
T Consensus 202 ------~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 275 (430)
T 2xyi_A 202 ------DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 275 (430)
T ss_dssp ------TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred ------CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence 58999999998732 2 23343 788999999999 5555544 8999999997332 56666766
Q ss_pred CCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCC-EEEEEecCCcEEEEEECC
Q psy3710 138 NPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT-RLATASYKGTLIRVFDTG 216 (424)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~~i~iwd~~ 216 (424)
|. ..+.+++|+|++..++++|+.||.|++||++....++..+..|...|.+++|+|+++ +|++++.|+. |++||+.
T Consensus 276 ~~--~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~ 352 (430)
T 2xyi_A 276 HT--AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLS 352 (430)
T ss_dssp CS--SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGG
T ss_pred CC--CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCC
Confidence 65 448899999999864444999999999999986577888999999999999999985 6899999999 9999997
Q ss_pred CcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCC-EEEEEeCCCcEEE
Q psy3710 217 SGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT-RLATASYKGTLIR 295 (424)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~~i~ 295 (424)
........... .++ .........+|...|++++|+|+++ +|++++.|+. |+
T Consensus 353 ~~~~~~~~~~~------------------~~~---------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~-i~ 404 (430)
T 2xyi_A 353 KIGEEQSTEDA------------------EDG---------PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI-MQ 404 (430)
T ss_dssp GTTCCCCHHHH------------------HHC---------CTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE-EE
T ss_pred CCccccCcccc------------------ccC---------CcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC-EE
Confidence 64321110000 000 0011223347899999999999998 8999999999 99
Q ss_pred EEECCCC
Q psy3710 296 VFDTGSG 302 (424)
Q Consensus 296 iwd~~~~ 302 (424)
+|++...
T Consensus 405 iw~~~~~ 411 (430)
T 2xyi_A 405 VWQMAEN 411 (430)
T ss_dssp EEEECHH
T ss_pred EeEcccc
Confidence 9998653
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=239.28 Aligned_cols=222 Identities=10% Similarity=0.059 Sum_probs=168.9
Q ss_pred EeecCCCCeEEEeeccCCeEEEEeCCCCCC----CCcccccccCCeEEEEEcc--------CCCEEEEEecCCcEEEEEE
Q psy3710 147 LCPNSNNSLLAFPGRKSGHVHLVDLADPER----PPLDIAAHEAPLSCIALNQ--------TGTRLATASYKGTLIRVFD 214 (424)
Q Consensus 147 ~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~~i~iwd 214 (424)
..+.+++.++++ |+.|++|++||.+.+.. ....+.+|.+.|.+++|+| ++++|++++.|++ |++||
T Consensus 95 ~~~~~~~~~las-~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t-v~~Wd 172 (393)
T 4gq1_A 95 NSSPVYSLFLAC-VCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT-LIIWR 172 (393)
T ss_dssp --CCEEEEEEEE-EETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE-EEEEE
T ss_pred eecCCCCCEEEE-EeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe-EEEEE
Confidence 344556667777 99999999999987521 2345789999999999998 7899999999999 99999
Q ss_pred CCCcceeeEEec---ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCe------------------------eecc
Q psy3710 215 TGSGQKLNELRR---GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL------------------------DIAA 267 (424)
Q Consensus 215 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~------------------------~~~~ 267 (424)
++++.++..+.. .+..++|+|++..++++|+.|+.|++||+++++.... ...+
T Consensus 173 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 252 (393)
T 4gq1_A 173 LTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG 252 (393)
T ss_dssp EETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred CCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence 988776655543 3778999999998888899999999999987653211 1236
Q ss_pred CCCCeEEEEEc-CCCCEEEEEeCCCcEEEEEECCCCceeeeec--------------------------------cCCcE
Q psy3710 268 HEAPLSCIALN-QTGTRLATASYKGTLIRVFDTGSGQKLNELR--------------------------------RDSSY 314 (424)
Q Consensus 268 ~~~~v~~~~~~-~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~--------------------------------~~~~~ 314 (424)
|...+.+++|+ |+++.|++++.|++ +++||+.+++....+. .++.+
T Consensus 253 ~~~~v~~v~~~~~dg~~l~s~s~d~~-i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (393)
T 4gq1_A 253 IASSLANVRWIGSDGSGILAMCKSGA-WLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYF 331 (393)
T ss_dssp CSSSCSEEEEETTTTCEEEEECTTSE-EEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEE
T ss_pred ccccceeeeeecCCCCEEEEEeCCCC-EEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEE
Confidence 78889999987 79999999999999 9999998776544321 14457
Q ss_pred EEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 315 LCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 315 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
+++|+.||.|++||+.+++.... ...+..+|..++|+|||++||+++.+| +.+|++.
T Consensus 332 ~~sgs~Dg~V~lwd~~~~~~~~~----------------------~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 332 ATAHSQHGLIQLINTYEKDSNSI----------------------PIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEEETTTTEEEEEETTCTTCCEE----------------------EEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEEECCCCEEEEEECCCCcEEEE----------------------ecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 78888999999999998765322 334567899999999999999998665 6666654
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=234.89 Aligned_cols=259 Identities=12% Similarity=0.143 Sum_probs=185.3
Q ss_pred EeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe-eccEEEEeecCCCceeEEEee
Q psy3710 59 MLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFET 137 (424)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~ 137 (424)
+.++++.+++++ .|++|++||+.+++.+..+. ...|.++.++|+ .+.++ |+.|++|+.. .
T Consensus 44 ~~~d~~~l~sg~-------~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~-~~s~s~D~~i~~w~~~-~--------- 104 (343)
T 3lrv_A 44 MYYDKWVCMCRC-------EDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA-IISRGPCNRLLLLYPG-N--------- 104 (343)
T ss_dssp SSEEEEEEEEEE-------ETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS-EEEECSTTEEEEEETT-T---------
T ss_pred hcCCCCEEEEEC-------CCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc-eEEecCCCeEEEEEcc-C---------
Confidence 345566666666 57888888887777665554 233444444444 11111 4444444432 1
Q ss_pred CCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCccc-ccccCCeEEEEEcc--CCCEEEEEecCCcEEEEEE
Q psy3710 138 NPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDI-AAHEAPLSCIALNQ--TGTRLATASYKGTLIRVFD 214 (424)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d~~~i~iwd 214 (424)
.+.+|++.+. +.+... ..|.++|.+++|+| +++++++++.|+. |++||
T Consensus 105 ---------------------------~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~-i~~wd 155 (343)
T 3lrv_A 105 ---------------------------QITILDSKTN-KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGT-IGFQS 155 (343)
T ss_dssp ---------------------------EEEEEETTTC-CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCC-EEEEE
T ss_pred ---------------------------ceEEeecCCc-ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCc-EEEEE
Confidence 2223344443 222222 26678999999999 9999999999999 99999
Q ss_pred CCCcceeeEEec----ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeecc-CCCCeEEEEEcCCCCEEEEEeC
Q psy3710 215 TGSGQKLNELRR----GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAA-HEAPLSCIALNQTGTRLATASY 289 (424)
Q Consensus 215 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 289 (424)
+++++....... .+..++++|++..++. |+.||.|++||+++++.....+.. |..+|++++|+|++.+|++++.
T Consensus 156 ~~~~~~~~~~~~~~~~~i~~~~~~pdg~~las-g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~ 234 (343)
T 3lrv_A 156 YEDDSQYIVHSAKSDVEYSSGVLHKDSLLLAL-YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD 234 (343)
T ss_dssp SSSSCEEEEECCCSSCCCCEEEECTTSCEEEE-ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES
T ss_pred CCCCcEEEEEecCCCCceEEEEECCCCCEEEE-EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC
Confidence 999988765532 3678899998876655 899999999999998866466667 9999999999999999999995
Q ss_pred CCcEEEEEECCCCcee-----------------eeeccCCcEEEEEeC-CCcEEEEEccccccccccccceeeeccCccc
Q psy3710 290 KGTLIRVFDTGSGQKL-----------------NELRRDSSYLCVSSD-HGTVHVFSVDEAQKINKQSSLASASFLPKYF 351 (424)
Q Consensus 290 d~~~i~iwd~~~~~~~-----------------~~~~~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 351 (424)
+ . |++||+++++.+ ..|+|++++|++++. |+.+++|++......
T Consensus 235 ~-~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~---------------- 296 (343)
T 3lrv_A 235 Q-T-VVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN---------------- 296 (343)
T ss_dssp S-B-EEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS----------------
T ss_pred C-e-EEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc----------------
Confidence 5 8 999999987653 356789999999998 999999999764421
Q ss_pred cCCceeeEEeecCCCceEEEEec---CCCeEEEEeccCcEEEEEec
Q psy3710 352 SSSWSFCKFQIPSDPPCICAFGA---DSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~~~~~dg~v~~~~~~ 394 (424)
|.. .++..++|++ +.+.|++++.||.+.++-..
T Consensus 297 ---~~~-------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 297 ---WTK-------DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp ---EEE-------EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred ---eEe-------cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 111 2345667888 88899999999999988654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-30 Score=236.09 Aligned_cols=235 Identities=14% Similarity=0.175 Sum_probs=195.7
Q ss_pred EEEeecCCeEEEEecCC-ceEEEe---eccEEEEeecCC---------CceeEEEeeCCCCCeeEEEeecCCCC-eEEEe
Q psy3710 94 ICLEFNAPVKGVRLRRD-KIVVVL---EGLIKVYTFIQC---------PQQLHVFETNPNPKGLCVLCPNSNNS-LLAFP 159 (424)
Q Consensus 94 ~~~~~~~~v~~~~~~~~-~~~~~~---~~~i~v~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~ 159 (424)
..+.|.+.|.+++|+|+ +.++++ +|.|++|++... ...+..+..|... +.+++|+|++. +|++
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~l~s- 199 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKE--GYGLSWNPNLNGYLLS- 199 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSC--CCCEEECTTSTTEEEE-
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCC--eEEEEeCCCCCCeEEE-
Confidence 34558999999999997 556665 899999999631 4666777777654 78899999988 7776
Q ss_pred eccCCeEEEEeCCCCCC------CCcccccccCCeEEEEEcc-CCCEEEEEecCCcEEEEEECCCc---ceeeEEec---
Q psy3710 160 GRKSGHVHLVDLADPER------PPLDIAAHEAPLSCIALNQ-TGTRLATASYKGTLIRVFDTGSG---QKLNELRR--- 226 (424)
Q Consensus 160 ~~~dg~i~i~d~~~~~~------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~~i~iwd~~~~---~~~~~~~~--- 226 (424)
|+.||.|++||+..... ....+.+|...|.+++|+| ++.+|++++.|+. |++||++++ +.+..+..
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK-LMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCSCSSSCSEEEECCSS
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe-EEEEECCCCCCCcceeEeecCCC
Confidence 99999999999987422 1445668999999999999 6789999999999 999999987 45556643
Q ss_pred ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEECCCC---
Q psy3710 227 GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT-RLATASYKGTLIRVFDTGSG--- 302 (424)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~~i~iwd~~~~--- 302 (424)
.+..++++|++..++++|+.||.|++||+++...+...+..|...|.+++|+|+++ +|++++.|+. |++||+...
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~~~~~~ 357 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKIGEE 357 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGGGTTCC
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCCCCccc
Confidence 37889999999988888999999999999987777888889999999999999985 6999999999 999999862
Q ss_pred -----------ceee------------eeccCCc-EEEEEeCCCcEEEEEccccc
Q psy3710 303 -----------QKLN------------ELRRDSS-YLCVSSDHGTVHVFSVDEAQ 333 (424)
Q Consensus 303 -----------~~~~------------~~~~~~~-~l~~~~~d~~i~iw~~~~~~ 333 (424)
+.+. .|+|+++ ++++++.||.|+||++....
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred cCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 2322 2567888 89999999999999998743
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-31 Score=232.33 Aligned_cols=249 Identities=20% Similarity=0.279 Sum_probs=176.9
Q ss_pred EEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEee
Q psy3710 84 IWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPG 160 (424)
Q Consensus 84 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (424)
+|++.+.+.+.... |...|.+++|+||+.++++ +..+++|++. ..+.......+ . +..+.+.++++.++++|
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~-~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~ 77 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVH-PVAHIMSQEMR--H--LSKVRMLHRTNYVAFVT 77 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSEEEEEEET-TEEEEEEEECS--C--CCEEEECTTSSEEEEEC
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCEEEEEecC-CcceeeeeecC--C--eEEEEEcCCCCEEEEEE
Confidence 45666677766666 8999999999999988876 5678999986 44444333322 2 44556677788886668
Q ss_pred ccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCc-ceeeEEecceeeeeecCCCCe
Q psy3710 161 RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG-QKLNELRRGLCVLCPNSNNSL 239 (424)
Q Consensus 161 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~ 239 (424)
+.|+.|++||+.++ +.+..+. |..+|.+++|+++. ++++ .++. |++||+.++ +.+..+.......++++ ..
T Consensus 78 ~~d~~v~iWd~~~~-~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~-i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~ 149 (355)
T 3vu4_A 78 GVKEVVHIWDDVKK-QDVSRIK-VDAPVKDLFLSREF--IVVS-YGDV-ISVFKFGNPWKRITDDIRFGGVCEFSN--GL 149 (355)
T ss_dssp SSTTEEEEEETTTT-EEEEEEE-CSSCEEEEEECSSE--EEEE-ETTE-EEEEESSTTCCBSSCCEEEEEEEEEET--TE
T ss_pred CCccEEEEEECCCC-cEEEEEE-CCCceEEEEEcCCE--EEEE-EcCE-EEEEECCCCceeeEEeccCCceEEEEc--cE
Confidence 88999999999986 5555554 67799999999864 4443 4778 999999988 76666655555566666 66
Q ss_pred EEEE-eecCCeEEEEeCCCCC--------------CC-CeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCc
Q psy3710 240 LAFP-GRKSGHVHLVDLADPE--------------RP-PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ 303 (424)
Q Consensus 240 ~~~~-~~~dg~i~i~d~~~~~--------------~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~ 303 (424)
++++ |+.+|.|++||+.++. .+ ...+.+|..+|++++|+|+|++|++++.|++.|++||+++++
T Consensus 150 la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~ 229 (355)
T 3vu4_A 150 LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV 229 (355)
T ss_dssp EEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC
T ss_pred EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 6666 7899999999999754 12 567889999999999999999999888888327777777665
Q ss_pred eeeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEe
Q psy3710 304 KLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVIC 383 (424)
Q Consensus 304 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 383 (424)
++.++... .|.+.+..++|+|++++|++++
T Consensus 230 ~~~~~~~g--------------------------------------------------~h~~~v~~~~~s~~~~~l~s~s 259 (355)
T 3vu4_A 230 LVREFRRG--------------------------------------------------LDRADVVDMKWSTDGSKLAVVS 259 (355)
T ss_dssp EEEEEECT--------------------------------------------------TCCSCEEEEEECTTSCEEEEEE
T ss_pred EEEEEEcC--------------------------------------------------CCCCcEEEEEECCCCCEEEEEE
Confidence 54433200 0335678899999999999999
Q ss_pred ccCcEEEEEecC
Q psy3710 384 ADGSYYKFMFNS 395 (424)
Q Consensus 384 ~dg~v~~~~~~~ 395 (424)
.||+|++|++..
T Consensus 260 ~d~~v~iw~~~~ 271 (355)
T 3vu4_A 260 DKWTLHVFEIFN 271 (355)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCEEEEEEccC
Confidence 999999999974
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-30 Score=238.08 Aligned_cols=312 Identities=11% Similarity=0.086 Sum_probs=245.6
Q ss_pred EECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEEC--CCCcEE
Q psy3710 17 GFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDD--LKKQVV 93 (424)
Q Consensus 17 ~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~--~~~~~~ 93 (424)
+|+|++.++++++.++ |.+||..+++.+.....+.. +..+.++|+++++++++ .|++|.+||+ .+++.+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~-------~d~~V~v~D~~~~t~~~~ 215 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIG-------RDARIDMIDLWAKEPTKV 215 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEE-------TTSEEEEEETTSSSCEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEEC-------CCCeEEEEECcCCCCcEE
Confidence 4899998888888877 99999999888665553223 77899999999999998 5799999999 899999
Q ss_pred EEEeecCCeEEEEecC----CceEEEe----eccEEEEeecCCCceeEEEeeCC---------CCCeeEEEeecCCCCeE
Q psy3710 94 ICLEFNAPVKGVRLRR----DKIVVVL----EGLIKVYTFIQCPQQLHVFETNP---------NPKGLCVLCPNSNNSLL 156 (424)
Q Consensus 94 ~~~~~~~~v~~~~~~~----~~~~~~~----~~~i~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l 156 (424)
.++.+...+..++|+| ++.++++ +++|.+||.. +.+.+..+..+. ....+..+.++|++..+
T Consensus 216 ~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~-t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~ 294 (543)
T 1nir_A 216 AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE-TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 294 (543)
T ss_dssp EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT-TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred EEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc-ccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence 9988877899999999 9876654 6899999986 778877776531 11246788999988887
Q ss_pred EEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEe-cCCcEEEEEECCCcceeeEEecc----e-ee
Q psy3710 157 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS-YKGTLIRVFDTGSGQKLNELRRG----L-CV 230 (424)
Q Consensus 157 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~~i~iwd~~~~~~~~~~~~~----~-~~ 230 (424)
+++...++.|.+||+.+..........+...+.+++|+|+|+++++++ .+++ |.+||..+++++..++.+ . ..
T Consensus 295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~-v~v~D~~tg~l~~~i~~g~~ph~g~g 373 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNK-VAVIDSKDRRLSALVDVGKTPHPGRG 373 (543)
T ss_dssp EEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSBCCTTC
T ss_pred EEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCe-EEEEECCCCeEEEeeccCCCCCCCCC
Confidence 776889999999999875322212224567788999999999877655 5778 999999999998888742 1 12
Q ss_pred ee-ecCCCCeEEEEee-cCCeEEEEeCCCC------CCCCeeeccCCCCeEEEEEcCCCCEEEEEe-------CCCcEEE
Q psy3710 231 LC-PNSNNSLLAFPGR-KSGHVHLVDLADP------ERPPLDIAAHEAPLSCIALNQTGTRLATAS-------YKGTLIR 295 (424)
Q Consensus 231 ~~-~~~~~~~~~~~~~-~dg~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~d~~~i~ 295 (424)
.. ++|++..+++++. .+++|.+||+.+. -+.+..+..|...+..++++|++++|++++ .+++ |.
T Consensus 374 ~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~-v~ 452 (543)
T 1nir_A 374 ANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-VA 452 (543)
T ss_dssp EEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTC-EE
T ss_pred cccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCce-EE
Confidence 22 4677677777665 6899999999873 234567778888899999999999999987 2667 99
Q ss_pred EEECCCCcee-e--------------------eeccCCcEEEEEe-----CCCcEEEEEccccccccccc
Q psy3710 296 VFDTGSGQKL-N--------------------ELRRDSSYLCVSS-----DHGTVHVFSVDEAQKINKQS 339 (424)
Q Consensus 296 iwd~~~~~~~-~--------------------~~~~~~~~l~~~~-----~d~~i~iw~~~~~~~~~~~~ 339 (424)
+||+.+++.. . +|+|+|+.++++. .|+.|.|||.++++++..+.
T Consensus 453 v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 453 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp EEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred EEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 9999987655 2 2578999988763 47999999999998765544
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=235.55 Aligned_cols=259 Identities=13% Similarity=0.114 Sum_probs=197.5
Q ss_pred EECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECC-------
Q psy3710 17 GFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL------- 88 (424)
Q Consensus 17 ~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~------- 88 (424)
.+.+++.+|++|+.++ |++||+.+++.+.... .+.+..+.+.|+ +++++ .|++|++|+..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s-------~D~~i~~w~~~~~~~~~~ 110 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRG-------PCNRLLLLYPGNQITILD 110 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEEC-------STTEEEEEETTTEEEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEec-------CCCeEEEEEccCceEEee
Confidence 4456788999999999 9999999887754443 456667777777 55555 58999999654
Q ss_pred --CCcEEEEEe--ecCCeEEEEecC--CceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEe
Q psy3710 89 --KKQVVICLE--FNAPVKGVRLRR--DKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFP 159 (424)
Q Consensus 89 --~~~~~~~~~--~~~~v~~~~~~~--~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (424)
+++.+..+. |..+|.+++|+| ++.++++ |+.|++||++ .++.......+. ...+.+++|+|++.++++
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~-~~~i~~~~~~pdg~~las- 187 (343)
T 3lrv_A 111 SKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE-DDSQYIVHSAKS-DVEYSSGVLHKDSLLLAL- 187 (343)
T ss_dssp TTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS-SSCEEEEECCCS-SCCCCEEEECTTSCEEEE-
T ss_pred cCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC-CCcEEEEEecCC-CCceEEEEECCCCCEEEE-
Confidence 566566555 557899999999 8877775 8999999997 666655443332 234788999999999998
Q ss_pred eccCCeEEEEeCCCCCCCCccccc-ccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEec------ce--ee
Q psy3710 160 GRKSGHVHLVDLADPERPPLDIAA-HEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR------GL--CV 230 (424)
Q Consensus 160 ~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~------~~--~~ 230 (424)
|+.||.|++||++++......+.. |.++|.+++|+|++.+|++++ ++. |++||+++++....+.. ++ ..
T Consensus 188 g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (343)
T 3lrv_A 188 YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQT-VVCFDLRKDVGTLAYPTYTIPEFKTGTVT 265 (343)
T ss_dssp ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSB-EEEEETTSSTTCBSSCCCBC-----CCEE
T ss_pred EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCe-EEEEEcCCCCcceeecccccccccccceE
Confidence 999999999999987433367777 999999999999999999999 458 99999999877654432 12 35
Q ss_pred eeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEEE
Q psy3710 231 LCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ---TGTRLATASYKGTLIRVFD 298 (424)
Q Consensus 231 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~~i~iwd 298 (424)
++++|++..++++++.++.+++|++......... .++..++|.| +.+.+++++.|+. ++++-
T Consensus 266 ~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~-~~~~~ 330 (343)
T 3lrv_A 266 YDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGG-IAAIL 330 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTE-EEEEE
T ss_pred EEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCc-eEEEE
Confidence 8999999988874444999999999765532221 5677888988 8889999999998 76654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-29 Score=255.38 Aligned_cols=373 Identities=11% Similarity=0.065 Sum_probs=265.7
Q ss_pred cccccCCceEEEEECCCCCeeEeecCC------e-EEEEeCCcCcccccccccCCCe-------eeEEEeccCceEEEEe
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACGMED------G-FRIYNCDPLKEKERQDFTDGGL-------GHVEMLFRCNYLALVG 70 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g~~~------~-i~iw~~~~~~~~~~~~~~~~~i-------~~~~~~~~~~~l~~~~ 70 (424)
.+.+|...|.+++|||||++||+++.+ . |++|++.+++. .....|...+ ..++|+|+++ +++++
T Consensus 47 ~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~~~ 124 (1045)
T 1k32_A 47 KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI-KRITYFSGKSTGRRMFTDVAGFDPDGN-LIIST 124 (1045)
T ss_dssp EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE-EECCCCCEEEETTEECSEEEEECTTCC-EEEEE
T ss_pred EeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe-EEcccCCCcccccccccccccCCCCCE-EEEEE
Confidence 477899999999999999999976432 2 99999987764 3345556666 8899999999 44444
Q ss_pred CCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEee---------------ccEEEEeecCCCceeEEE
Q psy3710 71 GGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLE---------------GLIKVYTFIQCPQQLHVF 135 (424)
Q Consensus 71 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---------------~~i~v~~~~~~~~~~~~~ 135 (424)
....+......|.+|++.+++...... .....++|+| + +++.. ....+|..... .....+
T Consensus 125 ~~~~~~~~~~~l~~~~~~~g~~~~l~~--~~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~-~~~~~l 199 (1045)
T 1k32_A 125 DAMQPFSSMTCLYRVENDGINFVPLNL--GPATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GAFKKI 199 (1045)
T ss_dssp CTTSSSTTCCEEEEEEGGGTEEEECCS--CSCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEET-TEEEEE
T ss_pred CCcCCCcccceEEEEECCCCCeEEecC--CCcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCC-CCeEEC
Confidence 321111113578888987776543222 2345677999 7 55541 24667765423 444555
Q ss_pred eeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEEC
Q psy3710 136 ETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDT 215 (424)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~ 215 (424)
..|. ..+..+.|+++ ..+++ ++.++.+.+|.+.........+..|. .+...+|+|+|+.|+++ .++. |++||+
T Consensus 200 ~~~~--~~v~~~~~s~d-~l~~~-~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~-i~~~d~ 272 (1045)
T 1k32_A 200 VDMS--THVSSPVIVGH-RIYFI-TDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGS-IYIFNP 272 (1045)
T ss_dssp ECCS--SCCEEEEEETT-EEEEE-ECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTE-EEEECT
T ss_pred cCCC--CcccceEEeCC-EEEEE-EeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCE-EEEecC
Confidence 5555 44677888887 44444 78889999998764324455555554 46778999999999887 4788 999999
Q ss_pred CCcceeeEEec--------------ceeeeeec-CCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCC-CeEEEEEcC
Q psy3710 216 GSGQKLNELRR--------------GLCVLCPN-SNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEA-PLSCIALNQ 279 (424)
Q Consensus 216 ~~~~~~~~~~~--------------~~~~~~~~-~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~ 279 (424)
...+ +..+.. .+..++++ |++..++++. ++.|++|++..+. ...+..|.. .+..++|+
T Consensus 273 ~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s- 346 (1045)
T 1k32_A 273 DTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTY--VLKVPEPLRIRYVRRGGD- 346 (1045)
T ss_dssp TTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSB--EEECSCCSCEEEEEECSS-
T ss_pred CceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCc--eEEccCCCcceEEeeeEc-
Confidence 5443 334443 36778999 9999888754 8899999998654 233456777 89999999
Q ss_pred CCCEEEEEeCCCcEEE-EEECCCCcee-----------eeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeecc
Q psy3710 280 TGTRLATASYKGTLIR-VFDTGSGQKL-----------NELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFL 347 (424)
Q Consensus 280 ~~~~l~~~~~d~~~i~-iwd~~~~~~~-----------~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 347 (424)
||+.|++++.+.. +. +|++.+++.. ..|+|+|++|++++.++.|++||+.+++....
T Consensus 347 dg~~l~~~s~~~~-l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~---------- 415 (1045)
T 1k32_A 347 TKVAFIHGTREGD-FLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI---------- 415 (1045)
T ss_dssp SEEEEEEEETTEE-EEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE----------
T ss_pred CCCeEEEEECCCc-eEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEe----------
Confidence 9999999998777 88 9998876432 24789999999999999999999998764321
Q ss_pred CccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccC----------cEEEEEecCCcceeee----eehhhheecCC
Q psy3710 348 PKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADG----------SYYKFMFNSKGECWRD----VYIQFLEMTND 413 (424)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg----------~v~~~~~~~~~~~~~~----~~~~~~~~~~d 413 (424)
...+.+.+..++|||||++|++++.++ .|++|++. +++.... .....+.|+||
T Consensus 416 ------------~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~-~g~~~~l~~~~~~~~~~~~spd 482 (1045)
T 1k32_A 416 ------------ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME-GRKIFAATTENSHDYAPAFDAD 482 (1045)
T ss_dssp ------------EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT-TTEEEECSCSSSBEEEEEECTT
T ss_pred ------------ccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC-CCcEEEeeCCCcccCCceEcCC
Confidence 123445677899999999999887754 99999987 4443221 11234679999
Q ss_pred CceeeEEE
Q psy3710 414 SNLLSCIE 421 (424)
Q Consensus 414 ~~~l~~~~ 421 (424)
|++|+...
T Consensus 483 G~~l~~~s 490 (1045)
T 1k32_A 483 SKNLYYLS 490 (1045)
T ss_dssp SCEEEEEE
T ss_pred CCEEEEEe
Confidence 99887653
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.98 E-value=4e-30 Score=230.98 Aligned_cols=274 Identities=13% Similarity=0.116 Sum_probs=188.7
Q ss_pred ceEEEEE---CCCC-CeeEeecCCeEEEEeCCcCccccc---------ccccCCCeeeEE--------------------
Q psy3710 12 GLLYAGF---NQDQ-GCFACGMEDGFRIYNCDPLKEKER---------QDFTDGGLGHVE-------------------- 58 (424)
Q Consensus 12 ~V~~~~~---s~~g-~~la~g~~~~i~iw~~~~~~~~~~---------~~~~~~~i~~~~-------------------- 58 (424)
...++.| +|++ .++++|.+++|++|+......... ...+...+..+.
T Consensus 17 ~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (393)
T 4gq1_A 17 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNS 96 (393)
T ss_dssp CEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------
T ss_pred CCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceee
Confidence 3455666 4443 567778877799997533221000 001122333333
Q ss_pred EeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEE-----Ee-ecCCeEEEEecC--------CceEEEe---eccEE
Q psy3710 59 MLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVIC-----LE-FNAPVKGVRLRR--------DKIVVVL---EGLIK 121 (424)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-----~~-~~~~v~~~~~~~--------~~~~~~~---~~~i~ 121 (424)
+.+++..+++++ .|++|+|||.++++.... +. |.+.|.+++|+| |+.++++ |++|+
T Consensus 97 ~~~~~~~las~~-------~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~ 169 (393)
T 4gq1_A 97 SPVYSLFLACVC-------QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI 169 (393)
T ss_dssp CCEEEEEEEEEE-------TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred cCCCCCEEEEEe-------CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence 334455677776 589999999988876542 22 789999999997 7788886 89999
Q ss_pred EEeecCCCceeEEEeeCCCCCeeEEEeecCCCC-eEEEeeccCCeEEEEeCCCCCCCCc---------------------
Q psy3710 122 VYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNS-LLAFPGRKSGHVHLVDLADPERPPL--------------------- 179 (424)
Q Consensus 122 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~dg~i~i~d~~~~~~~~~--------------------- 179 (424)
+||+. ....+..+..+..+ +.+++|+|++. +|++ |+.||.|++||+.++.....
T Consensus 170 ~Wd~~-~~~~~~~~~~~~~~--v~~v~~~p~~~~~l~~-~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 170 IWRLT-DEGPILAGYPLSSP--GISVQFRPSNPNQLIV-GERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp EEEEE-TTEEEEEEEECSSC--EEEEEEETTEEEEEEE-EETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred EEECC-CCceeeeecCCCCC--cEEEEECCCCCceEEe-cCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 99997 55566666666644 78899999986 4555 99999999999987532111
Q ss_pred ---ccccccCCeEEEEEc-cCCCEEEEEecCCcEEEEEECCCcceeeEEecc----------------------eeeeee
Q psy3710 180 ---DIAAHEAPLSCIALN-QTGTRLATASYKGTLIRVFDTGSGQKLNELRRG----------------------LCVLCP 233 (424)
Q Consensus 180 ---~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~----------------------~~~~~~ 233 (424)
...+|...+.++.|+ |+++.+++++.|+. +++||+..++....+..+ ......
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~-i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGA-WLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp ------CCSSSCSEEEEETTTTCEEEEECTTSE-EEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred eeeecccccccceeeeeecCCCCEEEEEeCCCC-EEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 123677889999987 79999999999999 999999887655444321 112223
Q ss_pred cCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 234 NSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 234 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
.+.+..++++|+.||.|++||+.+++. ......|..+|.+++|+|||++||+++.+| +.+|.+.
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~-~~~~~~~~~~V~svafspdG~~LA~as~~G--v~lvrL~ 388 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEKDS-NSIPIQLGMPIVDFCWHQDGSHLAIATEGS--VLLTRLM 388 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCTTC-CEEEEECSSCEEEEEECTTSSEEEEEESSE--EEEEEEG
T ss_pred cCCCCEEEEEECCCCEEEEEECCCCcE-EEEecCCCCcEEEEEEcCCCCEEEEEeCCC--eEEEEEe
Confidence 345667788899999999999998775 444557889999999999999999999877 6777653
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-30 Score=248.21 Aligned_cols=238 Identities=15% Similarity=0.211 Sum_probs=192.9
Q ss_pred ccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECC--CCcEEEEEe-ecCCeEEEEecCC--ceEEEe---ec
Q psy3710 47 QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL--KKQVVICLE-FNAPVKGVRLRRD--KIVVVL---EG 118 (424)
Q Consensus 47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~--~~~~~~~~~-~~~~v~~~~~~~~--~~~~~~---~~ 118 (424)
...|.+.|.+++|+|+++++++++ .|+.|++||+. +++.+..+. |.++|.+++|+|+ +..+++ ||
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~-------~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCS-------SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEE-------TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred cccCcceeEEEEECCCCCeEEEEE-------CCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 556899999999999999999988 58999999987 456666666 8899999999987 766654 89
Q ss_pred cEEEEeecCCCc--eeEEEeeCCCCCeeEEEeecCC--CCeEEEeeccCCeEEEEeCCCCC-CCCcccccccCCeEEEEE
Q psy3710 119 LIKVYTFIQCPQ--QLHVFETNPNPKGLCVLCPNSN--NSLLAFPGRKSGHVHLVDLADPE-RPPLDIAAHEAPLSCIAL 193 (424)
Q Consensus 119 ~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~ 193 (424)
.|++||+. .++ ....+..|. ..+.+++|+|+ +..+++ |+.||.|++||+.... .....+.+|...|.+++|
T Consensus 78 ~I~vwd~~-~~~~~~~~~~~~h~--~~V~~v~~sp~~~~~~l~s-gs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~ 153 (753)
T 3jro_A 78 KVLIWKEE-NGRWSQIAVHAVHS--ASVNSVQWAPHEYGPLLLV-ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 153 (753)
T ss_dssp CEEEEEEE-TTEEEEEEEECCCS--SCEEEEEECCGGGCSEEEE-EETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEE
T ss_pred eEEEEECC-CCcccccccccCCC--CCeEEEEECCCCCCCEEEE-EeCCCcEEEEEeecCCCcceeEeecCCCceEEEEe
Confidence 99999997 554 445555555 45889999999 899998 9999999999998752 234466789999999999
Q ss_pred cc-------------CCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCC
Q psy3710 194 NQ-------------TGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER 260 (424)
Q Consensus 194 ~~-------------~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~ 260 (424)
+| ++..+++++.||. |++||++++......
T Consensus 154 ~p~~~~~~~~~~~~~d~~~l~sgs~dg~-I~iwd~~~~~~~~~~------------------------------------ 196 (753)
T 3jro_A 154 APATIEEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVL------------------------------------ 196 (753)
T ss_dssp CCCC---------CGGGCCEEEEETTSC-EEEEEEETTTTEEEE------------------------------------
T ss_pred cCcccccccccccCCCCCEEEEEECCCe-EEEEeccCCccccee------------------------------------
Confidence 99 5888999999998 999998765332111
Q ss_pred CCeeeccCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEEECCCCce-----e------------eeeccCCcEEEEEeC
Q psy3710 261 PPLDIAAHEAPLSCIALNQT---GTRLATASYKGTLIRVFDTGSGQK-----L------------NELRRDSSYLCVSSD 320 (424)
Q Consensus 261 ~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~~i~iwd~~~~~~-----~------------~~~~~~~~~l~~~~~ 320 (424)
...+.+|..+|++++|+|+ +++|++++.||. |++||+.+++. + ..|+|+++++++++.
T Consensus 197 -~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~ 274 (753)
T 3jro_A 197 -ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 274 (753)
T ss_dssp -EEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC-EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS
T ss_pred -eeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE-EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC
Confidence 1233479999999999999 899999999999 99999988631 1 146799999999999
Q ss_pred CCcEEEEEcccccc
Q psy3710 321 HGTVHVFSVDEAQK 334 (424)
Q Consensus 321 d~~i~iw~~~~~~~ 334 (424)
||.|++|++..+..
T Consensus 275 Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 275 DNKVTLWKENLEGK 288 (753)
T ss_dssp SSCEECCBCCSSSC
T ss_pred CCEEEEEecCCCCC
Confidence 99999999987543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-28 Score=225.39 Aligned_cols=328 Identities=11% Similarity=0.080 Sum_probs=236.7
Q ss_pred EeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe---eccEEEEee--cCCCceeE
Q psy3710 59 MLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL---EGLIKVYTF--IQCPQQLH 133 (424)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~i~v~~~--~~~~~~~~ 133 (424)
++|++..+++.+ .|++|.+||..+++.+.++.....+..++|+|++.++++ ++.|.+||+ . +.+.+.
T Consensus 145 ~~p~~~~~vs~~-------~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~-t~~~~~ 216 (543)
T 1nir_A 145 LDLPNLFSVTLR-------DAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAK-EPTKVA 216 (543)
T ss_dssp CCGGGEEEEEEG-------GGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSS-SCEEEE
T ss_pred cCCCCEEEEEEc-------CCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCC-CCcEEE
Confidence 677775555444 479999999999999999985445999999999977765 789999999 5 567777
Q ss_pred EEeeCCCCCeeEEEeecC----CCCeEEEeeccCCeEEEEeCCCCCCCCccccc----------ccC-CeEEEEEccCCC
Q psy3710 134 VFETNPNPKGLCVLCPNS----NNSLLAFPGRKSGHVHLVDLADPERPPLDIAA----------HEA-PLSCIALNQTGT 198 (424)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~ 198 (424)
.+... .....++++| ++++++++...++.|.+||..+. +++..+.. |.. .+..+.++|++.
T Consensus 217 ~i~~g---~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~-~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~ 292 (543)
T 1nir_A 217 EIKIG---IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP 292 (543)
T ss_dssp EEECC---SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred EEecC---CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc-ccceeecccCcccCccccccCCceEEEEECCCCC
Confidence 77643 3467889999 99999984446899999999886 55555443 323 789999999776
Q ss_pred E-EEEEecCCcEEEEEECCCcceee--EEec--ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec----cCC
Q psy3710 199 R-LATASYKGTLIRVFDTGSGQKLN--ELRR--GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA----AHE 269 (424)
Q Consensus 199 ~-l~~~~~d~~~i~iwd~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~----~~~ 269 (424)
. +++...++. |.+||+.+.+.+. .+.. ....+.++|+++++++++..+++|.+||..+++. ...+. .|.
T Consensus 293 ~~~vs~~~~g~-i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l-~~~i~~g~~ph~ 370 (543)
T 1nir_A 293 EFIVNVKETGK-VLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL-SALVDVGKTPHP 370 (543)
T ss_dssp EEEEEETTTTE-EEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE-EEEEECSSSBCC
T ss_pred EEEEEECCCCe-EEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE-EEeeccCCCCCC
Confidence 5 556667788 9999998876544 3332 2566899999999998888899999999998763 33333 255
Q ss_pred CCeEEEEEcCC-CCEEEEEe-CCCcEEEEEECCC-------Cceeee------------eccCCcEEEEEe-------CC
Q psy3710 270 APLSCIALNQT-GTRLATAS-YKGTLIRVFDTGS-------GQKLNE------------LRRDSSYLCVSS-------DH 321 (424)
Q Consensus 270 ~~v~~~~~~~~-~~~l~~~~-~d~~~i~iwd~~~-------~~~~~~------------~~~~~~~l~~~~-------~d 321 (424)
+....+ ++|+ +..++++. .|++ |.+||+.+ ++++++ ++|++++|++++ .+
T Consensus 371 g~g~~~-~~p~~g~~~~s~~~~d~~-V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~ 448 (543)
T 1nir_A 371 GRGANF-VHPKYGPVWSTSHLGDGS-ISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARIS 448 (543)
T ss_dssp TTCEEE-EETTTEEEEEEEBSSSSE-EEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHH
T ss_pred CCCccc-CCCCCccEEEeccCCCce-EEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccC
Confidence 444333 4676 66677765 5788 99999988 676665 468999999987 27
Q ss_pred CcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEe-----ccCcEEEEEecCC
Q psy3710 322 GTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVIC-----ADGSYYKFMFNSK 396 (424)
Q Consensus 322 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-----~dg~v~~~~~~~~ 396 (424)
++|.+||+.+++...+.-.+....- ...+...+..+.|+|+|++|+++. .|+.|.+||.. +
T Consensus 449 ~~v~v~d~~~~~~~~~~~~v~~~~~-------------~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~-t 514 (543)
T 1nir_A 449 QSVAVFDLKNLDAKYQVLPIAEWAD-------------LGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK-T 514 (543)
T ss_dssp TCEEEEETTCTTSCCEEECHHHHHC-------------CCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETT-T
T ss_pred ceEEEEECCCCCCCeEEeechhhcc-------------cCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECC-C
Confidence 7999999999875421100000000 001223467889999999998762 47999999976 7
Q ss_pred cceeeeeehhhheecCCCcee
Q psy3710 397 GECWRDVYIQFLEMTNDSNLL 417 (424)
Q Consensus 397 ~~~~~~~~~~~~~~~~d~~~l 417 (424)
+++.+...... -.+|+|+|-
T Consensus 515 ~~~~~~i~~~~-~~~p~g~~~ 534 (543)
T 1nir_A 515 LKLKAVVKDPR-LITPTGKFN 534 (543)
T ss_dssp TEEEEEECCTT-CCSEEEEEE
T ss_pred ceEEEeecCCC-ccCCCeeee
Confidence 77765443221 256788763
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-28 Score=245.15 Aligned_cols=397 Identities=11% Similarity=0.034 Sum_probs=265.9
Q ss_pred cccccCCce-------EEEEECCCCCeeEeecCC----e---EEEEeCCcCcccccc-----------------------
Q psy3710 5 TSSTYKNGL-------LYAGFNQDQGCFACGMED----G---FRIYNCDPLKEKERQ----------------------- 47 (424)
Q Consensus 5 ~l~~h~~~V-------~~~~~s~~g~~la~g~~~----~---i~iw~~~~~~~~~~~----------------------- 47 (424)
.+.+|...+ ..++|||||+++++++.+ + |.+|++.+++.....
T Consensus 94 ~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~ 173 (1045)
T 1k32_A 94 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFEL 173 (1045)
T ss_dssp ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCC
T ss_pred EcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCc
Confidence 477888888 999999999977776643 2 788887665432111
Q ss_pred --------------------------cccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC-CcEEEEEeecC
Q psy3710 48 --------------------------DFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK-KQVVICLEFNA 100 (424)
Q Consensus 48 --------------------------~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~ 100 (424)
..|.+.+..+.|+++ .+++++. .|+++.||.+.. +.....+....
T Consensus 174 ~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d--~l~~~~~------~dg~~~l~~~~~~g~~~~~l~~~~ 245 (1045)
T 1k32_A 174 PHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITD------IDGFGQIYSTDLDGKDLRKHTSFT 245 (1045)
T ss_dssp TTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT--EEEEEEC------TTSSCEEEEEETTSCSCEECCCCC
T ss_pred cccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC--EEEEEEe------ccCceEEEEEeCCCCcceEecCCC
Confidence 112344455555554 4444443 367778887542 33344444334
Q ss_pred CeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCC---------CCCeeEEEeec-CCCCeEEEeeccCCeEEE
Q psy3710 101 PVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNP---------NPKGLCVLCPN-SNNSLLAFPGRKSGHVHL 168 (424)
Q Consensus 101 ~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~l~~~~~~dg~i~i 168 (424)
.+...+|+||+..++. ++.|.+|++. .. .+..+..+. ....+..++|+ |+|+.|++ ++ ++.|.+
T Consensus 246 ~~~~~~~SpDG~~la~~~~~~i~~~d~~-~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~-~~-~~~i~~ 321 (1045)
T 1k32_A 246 DYYPRHLNTDGRRILFSKGGSIYIFNPD-TE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF-VS-RGQAFI 321 (1045)
T ss_dssp SSCEEEEEESSSCEEEEETTEEEEECTT-TC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE-EE-TTEEEE
T ss_pred CcceeeEcCCCCEEEEEeCCEEEEecCC-ce-EeeeeccCcccccccccccccccceeeecCCCCCEEEE-EE-cCEEEE
Confidence 5677899999976665 8899999983 33 333443321 01136678999 99999998 54 889999
Q ss_pred EeCCCCCCCCcccccccC-CeEEEEEccCCCEEEEEecCCcEEE-EEECCCcceeeEEe--cceeeeeecCCCCeEEEEe
Q psy3710 169 VDLADPERPPLDIAAHEA-PLSCIALNQTGTRLATASYKGTLIR-VFDTGSGQKLNELR--RGLCVLCPNSNNSLLAFPG 244 (424)
Q Consensus 169 ~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~~i~-iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 244 (424)
|++..+ ....+..|.. .+..++|+ +|+.|++++.+.. +. +||+.+++...... ..+..++++|++..+++ +
T Consensus 322 ~~~~~~--~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~-l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~-~ 396 (1045)
T 1k32_A 322 QDVSGT--YVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGD-FLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVV-A 396 (1045)
T ss_dssp ECTTSS--BEEECSCCSCEEEEEECSS-SEEEEEEEETTEE-EEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEE-E
T ss_pred EcCCCC--ceEEccCCCcceEEeeeEc-CCCeEEEEECCCc-eEEEEECCCCCceEecCCccceeeeEECCCCCEEEE-E
Confidence 999864 3344566777 89999999 9999999988777 88 99998775433221 23677899999998887 7
Q ss_pred ecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCC----------cEEEEEECCCCceee--------
Q psy3710 245 RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKG----------TLIRVFDTGSGQKLN-------- 306 (424)
Q Consensus 245 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----------~~i~iwd~~~~~~~~-------- 306 (424)
+.++.|++||+.+++. ......|...+.+++|+|||++|++++.++ . |++||+.+++...
T Consensus 397 ~~~~~v~~~d~~tg~~-~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~-i~l~d~~~g~~~~l~~~~~~~ 474 (1045)
T 1k32_A 397 NDRFEIMTVDLETGKP-TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA-IHVYDMEGRKIFAATTENSHD 474 (1045)
T ss_dssp ETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE-EEEEETTTTEEEECSCSSSBE
T ss_pred CCCCeEEEEECCCCce-EEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCe-EEEEECCCCcEEEeeCCCccc
Confidence 7889999999988763 344457889999999999999999987754 6 9999999876322
Q ss_pred ---eeccCCcEEEEEeCCCcEEEEEcccccccccccc-ceeee----------ccCccc---------cC-CceeeEEee
Q psy3710 307 ---ELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSS-LASAS----------FLPKYF---------SS-SWSFCKFQI 362 (424)
Q Consensus 307 ---~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~~----------~~~~~~---------~~-~~~~~~~~~ 362 (424)
.|+|+|++|++++.++...+|+............ ..... +.+... .+ .-....+..
T Consensus 475 ~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~ 554 (1045)
T 1k32_A 475 YAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV 554 (1045)
T ss_dssp EEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSC
T ss_pred CCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCC
Confidence 3789999999999988888898764332111000 00000 111000 00 001122334
Q ss_pred cCCCceEEEEecCCCeEEE-----------Ee--ccCcEEEEEecCCcceee-eeehhhheecCCCceeeEEE
Q psy3710 363 PSDPPCICAFGADSNSIIV-----------IC--ADGSYYKFMFNSKGECWR-DVYIQFLEMTNDSNLLSCIE 421 (424)
Q Consensus 363 ~~~~~~~~~~s~~~~~l~~-----------~~--~dg~v~~~~~~~~~~~~~-~~~~~~~~~~~d~~~l~~~~ 421 (424)
+.+.+..++++||++++++ .+ ....|++||+. +++... ......+.++|||+.|+.+.
T Consensus 555 ~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~v~~~~~S~DG~~l~~~~ 626 (1045)
T 1k32_A 555 DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK-TRKVTEVKNNLTDLRLSADRKTVMVRK 626 (1045)
T ss_dssp CCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETT-TCCEEEEEEEEEEEEECTTSCEEEEEE
T ss_pred CCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECC-CCcEEEeecCcceEEECCCCCEEEEEc
Confidence 5567889999999987775 11 24467777765 333322 23345678999999988763
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-28 Score=206.46 Aligned_cols=247 Identities=13% Similarity=0.012 Sum_probs=173.3
Q ss_pred ccccccCCceEEEEECCCCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEecc----CceEEEEeCCcCCCcCC
Q psy3710 4 GTSSTYKNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFR----CNYLALVGGGTHPKYPN 79 (424)
Q Consensus 4 ~~l~~h~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~~~~~~~~d 79 (424)
.+..+|+.+|..++|.||-.-|++-.-+ ..+...|..++++|+ +..++..+
T Consensus 80 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~----------------~~~~~~v~sla~spd~~~~~~~l~s~g--------- 134 (356)
T 2w18_A 80 YTWHFAEVPVLQIVPVPDVYNLVCVALG----------------NLEIREIRALFCSSDDESEKQVLLKSG--------- 134 (356)
T ss_dssp EEEECCSSCEEEECCCTTCCSCEEEEEC----------------SSSEEEEEEECC------CCEEEEEEE---------
T ss_pred EEEeccCceeEEEEEcCcccceeeeeec----------------cccccceEEEEECCCccccccEEEeCC---------
Confidence 4567888888888888886544432211 112445778899999 77787755
Q ss_pred CeEEEEECCCCcEEEEEe--ecCCeEEEEecCCceEEEeeccEEEEeecCCCceeEEEeeCCCCCeeEEEee-cCCCCeE
Q psy3710 80 NRVMIWDDLKKQVVICLE--FNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCP-NSNNSLL 156 (424)
Q Consensus 80 ~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 156 (424)
+.+++|++.+++.+.... | |+.|++|++.++++.+..+..|.....+.++++ .-++..|
T Consensus 135 ~~~~v~~l~~g~lv~ss~~g~------------------d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~L 196 (356)
T 2w18_A 135 NIKAVLGLTKRRLVSSSGTLS------------------DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEAL 196 (356)
T ss_dssp EEEEEEEETTTEEEEEESSST------------------TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEE
T ss_pred CeEEEEecCCCcEEEecccCC------------------CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceE
Confidence 568888775555443321 1 667888888656777777788887766655555 2267788
Q ss_pred EEeeccCCeEEEEeCCCCCCCCccccccc---CCeEEEEEccCCCEE------------EEEecCCcEEEEEECCCccee
Q psy3710 157 AFPGRKSGHVHLVDLADPERPPLDIAAHE---APLSCIALNQTGTRL------------ATASYKGTLIRVFDTGSGQKL 221 (424)
Q Consensus 157 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------------~~~~~d~~~i~iwd~~~~~~~ 221 (424)
++ |+.|++|++||++++ +.+..+.+|. ..+.+++|+|+|.++ ++|+.|++ |++||..+++.+
T Consensus 197 aS-gS~D~TIkIWDl~TG-k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t-IklWd~~tgk~l 273 (356)
T 2w18_A 197 LG-TTIMNNIVIWNLKTG-QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ-LIVINPKTTLSV 273 (356)
T ss_dssp EE-EETTSEEEEEETTTC-CEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE-EEEEETTTTEEE
T ss_pred EE-ecCCCcEEEEECCCC-cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE-EEEEECCCCEEE
Confidence 87 999999999999997 7777787654 467788999999876 56778899 999999999887
Q ss_pred eEEe-----cce-eeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeE-EEEEcCCCCEEEEEeCCCcEE
Q psy3710 222 NELR-----RGL-CVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLS-CIALNQTGTRLATASYKGTLI 294 (424)
Q Consensus 222 ~~~~-----~~~-~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~~i 294 (424)
..+. ++. ..+..+.. ..++++|+.|++|+|||+.+++ ...++.+|...+. .++|+|||++|++|+.|++ |
T Consensus 274 ~v~~~~~p~Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk-~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T-I 350 (356)
T 2w18_A 274 GVMLYCLPPGQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQ-CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN-I 350 (356)
T ss_dssp EEEEECCCTTCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCS-EEEEECCC--CCCCEEEECSSSSEEEEECTTSC-E
T ss_pred EEEEeeccCCCcceeEccccC-CCEEEEEcCCCcEEEEECCCCc-EEEEecCCCCCeEEEEEECCCCCEEEEEECCCc-E
Confidence 6542 111 11111222 2356779999999999999877 4566778877655 6899999999999999999 9
Q ss_pred EEEEC
Q psy3710 295 RVFDT 299 (424)
Q Consensus 295 ~iwd~ 299 (424)
+|||+
T Consensus 351 klWd~ 355 (356)
T 2w18_A 351 FVYHY 355 (356)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 99985
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-27 Score=231.76 Aligned_cols=307 Identities=11% Similarity=0.077 Sum_probs=224.3
Q ss_pred CCceEEEEECCCCCeeEeecC-C------eEEEEeCCcCcccccccccC------------------------CCeeeEE
Q psy3710 10 KNGLLYAGFNQDQGCFACGME-D------GFRIYNCDPLKEKERQDFTD------------------------GGLGHVE 58 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~~-~------~i~iw~~~~~~~~~~~~~~~------------------------~~i~~~~ 58 (424)
...|.+++|||||++|++++. + .|++||+++++.......+. ..+..++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999998765 3 39999999887644333322 2378899
Q ss_pred EeccCceEEEEeCCcCCCcCCCeEEEEECCCC---cEEEEEeecCCeEEEEecCCceEEEe--eccEEEEeecCCCceeE
Q psy3710 59 MLFRCNYLALVGGGTHPKYPNNRVMIWDDLKK---QVVICLEFNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLH 133 (424)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~ 133 (424)
|+|+++++++++ ++.|++||+.++ +......+...+..++|+||+..++. ++.|++||+. +++...
T Consensus 116 ~SpDg~~l~~~~--------~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~-~g~~~~ 186 (741)
T 2ecf_A 116 WSPDAQRLLFPL--------GGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLA-SGRQMQ 186 (741)
T ss_dssp ECTTSSEEEEEE--------TTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETT-TTEEEE
T ss_pred ECCCCCEEEEEe--------CCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecC-CCCEEE
Confidence 999999999998 489999999888 54443346788999999999987775 7799999986 444433
Q ss_pred EEeeCCCCC--------------eeEEEeecCCCCeEEEeeccCC---------------------------------eE
Q psy3710 134 VFETNPNPK--------------GLCVLCPNSNNSLLAFPGRKSG---------------------------------HV 166 (424)
Q Consensus 134 ~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~~dg---------------------------------~i 166 (424)
....+.... .+..+.|+|||+.|++ ++.|+ .|
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~-~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAY-ARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEE-EEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEE-EEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 322222100 1356899999999998 65554 78
Q ss_pred EEEeCCC-CCCCCcccc--cccCCeEEEEEccCCCEEEEEec-----CCcEEEEEECCCcceeeEEecc-------eeee
Q psy3710 167 HLVDLAD-PERPPLDIA--AHEAPLSCIALNQTGTRLATASY-----KGTLIRVFDTGSGQKLNELRRG-------LCVL 231 (424)
Q Consensus 167 ~i~d~~~-~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-----d~~~i~iwd~~~~~~~~~~~~~-------~~~~ 231 (424)
.+||+.+ + +...... .|...+..++| |||+.|++++. +.. |++||+.+++....+..+ ...+
T Consensus 266 ~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~-i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 342 (741)
T 2ecf_A 266 GVISPAEQA-QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLD-LVEVTLASNQQRVLAHETSPTWVPLHNSL 342 (741)
T ss_dssp EEECSSTTC-CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEE-EEEEETTTCCEEEEEEEECSSCCCCCSCC
T ss_pred EEEECCCCC-ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEE-EEEEECCCCceEEEEEcCCCCcCCcCCce
Confidence 8999987 6 3332222 47788999999 99999987764 456 999999998876665533 2468
Q ss_pred eecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEE-EEcCCCCEEEEE-eCCC--cEEEEEECCC-Ccee-
Q psy3710 232 CPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCI-ALNQTGTRLATA-SYKG--TLIRVFDTGS-GQKL- 305 (424)
Q Consensus 232 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~-~~d~--~~i~iwd~~~-~~~~- 305 (424)
+|+|+++ ++++++.+|.+++|.+..... ...+..|...+..+ .|+|+++.|+.. +.++ . ++||++.. +...
T Consensus 343 ~~spdg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~-~~l~~~~~~g~~~~ 419 (741)
T 2ecf_A 343 RFLDDGS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARE-SQIYAVPLQGGQPQ 419 (741)
T ss_dssp EECTTSC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTC-BEEEEEETTCCCCE
T ss_pred EECCCCe-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCce-EEEEEEEcCCCCee
Confidence 8999998 666688888777777653333 56666788888887 599999877654 4454 7 89998753 3322
Q ss_pred ----------eeeccCCcEEEEEeCC----CcEEEEEcccc
Q psy3710 306 ----------NELRRDSSYLCVSSDH----GTVHVFSVDEA 332 (424)
Q Consensus 306 ----------~~~~~~~~~l~~~~~d----~~i~iw~~~~~ 332 (424)
..|+|+|++|+....+ ..+.+|+...+
T Consensus 420 ~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 420 RLSKAPGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp ECCCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred ecccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 2478999988866543 46888987653
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-26 Score=205.97 Aligned_cols=285 Identities=14% Similarity=0.074 Sum_probs=206.2
Q ss_pred cCCceEEEEECCCCC-eeEeec----CC-----eEEEEeC--CcCccccc--ccccCCCeeeEEEec-------------
Q psy3710 9 YKNGLLYAGFNQDQG-CFACGM----ED-----GFRIYNC--DPLKEKER--QDFTDGGLGHVEMLF------------- 61 (424)
Q Consensus 9 h~~~V~~~~~s~~g~-~la~g~----~~-----~i~iw~~--~~~~~~~~--~~~~~~~i~~~~~~~------------- 61 (424)
+...+...+|++.|. ++++|+ .+ .+++||+ .+++.+.. ...|...+..+++.+
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 345778888988884 555664 23 3899999 88876522 444555565555543
Q ss_pred -cCceEEEEeCCcCCCcCC---CeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe---e---ccEEEEeecCCCce
Q psy3710 62 -RCNYLALVGGGTHPKYPN---NRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL---E---GLIKVYTFIQCPQQ 131 (424)
Q Consensus 62 -~~~~l~~~~~~~~~~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~---~~i~v~~~~~~~~~ 131 (424)
.+..+++++... .+ ++|++||...+.......+...+.+++|+|++..+++ + ..|++||+. +++.
T Consensus 141 ~~~~~l~~~s~~~----~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~-tg~~ 215 (415)
T 2hqs_A 141 AFRTRIAYVVQTN----GGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA-NGAV 215 (415)
T ss_dssp CTTCEEEEEEECS----SSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT-TCCE
T ss_pred cCCCEEEEEEecC----CCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECC-CCcE
Confidence 156677766431 12 7999999975554444448899999999999987775 3 389999996 5554
Q ss_pred eEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCe--EEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecC-C-
Q psy3710 132 LHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGH--VHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK-G- 207 (424)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~- 207 (424)
. .+..+. ..+.+++|+|||+.|+++++.++. |++||+.++ ....+..|...+.+++|+|+|++|++++.+ +
T Consensus 216 ~-~l~~~~--~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~ 290 (415)
T 2hqs_A 216 R-QVASFP--RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG--QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGR 290 (415)
T ss_dssp E-EEECCS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--CEEECCCCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred E-EeecCC--CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC--CEEeCcCCCCcccceEECCCCCEEEEEECCCCC
Confidence 3 444444 357889999999999864666554 999999875 346677888999999999999999988864 4
Q ss_pred -cEEEEEECCCcceeeEEe--cceeeeeecCCCCeEEEEeecC--CeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCC
Q psy3710 208 -TLIRVFDTGSGQKLNELR--RGLCVLCPNSNNSLLAFPGRKS--GHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT 282 (424)
Q Consensus 208 -~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 282 (424)
. |++||+.+++...... .....++++|+++.+++++..+ ..|++||+.+++. ..+..+. .+.+++|+|||+
T Consensus 291 ~~-i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~spdg~ 366 (415)
T 2hqs_A 291 PQ-VYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAPNGT 366 (415)
T ss_dssp CE-EEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECTTSS
T ss_pred cE-EEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcCCCC
Confidence 5 8888998876433211 2256789999999999876653 5899999998663 3444554 899999999999
Q ss_pred EEEEEeCCC---cEEEEEECCCCceeeeec
Q psy3710 283 RLATASYKG---TLIRVFDTGSGQKLNELR 309 (424)
Q Consensus 283 ~l~~~~~d~---~~i~iwd~~~~~~~~~~~ 309 (424)
+|++++.++ . |++||+. +.....+.
T Consensus 367 ~l~~~s~~~~~~~-l~~~d~~-g~~~~~l~ 394 (415)
T 2hqs_A 367 MVIYSSSQGMGSV-LNLVSTD-GRFKARLP 394 (415)
T ss_dssp EEEEEEEETTEEE-EEEEETT-SCCEEECC
T ss_pred EEEEEEcCCCccE-EEEEECC-CCcEEEee
Confidence 999988877 5 8888886 33344443
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-25 Score=203.46 Aligned_cols=289 Identities=16% Similarity=0.117 Sum_probs=208.4
Q ss_pred CCeeeEEEeccCceEEEEeCCcCCCcCCC----eEEEEEC--CCCcEEEE--Ee-ecCCeEEEEecC-------------
Q psy3710 52 GGLGHVEMLFRCNYLALVGGGTHPKYPNN----RVMIWDD--LKKQVVIC--LE-FNAPVKGVRLRR------------- 109 (424)
Q Consensus 52 ~~i~~~~~~~~~~~l~~~~~~~~~~~~d~----~i~iwd~--~~~~~~~~--~~-~~~~v~~~~~~~------------- 109 (424)
..+....|.+.+..+++.++-. ...|| ++++||+ .+++.+.. +. +...+..+++++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~--~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVT--PNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEE--ECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cCcCHHHHHhcCCCEEEEEEEE--ECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 3566677777776555333200 00256 9999999 99988744 44 566676666653
Q ss_pred --CceEEE-e-e------ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCC---eEEEEeCCCCCC
Q psy3710 110 --DKIVVV-L-E------GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSG---HVHLVDLADPER 176 (424)
Q Consensus 110 --~~~~~~-~-~------~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg---~i~i~d~~~~~~ 176 (424)
+..++. + + +.|++||+. +.....+..+.. .+.+++|+|+++.|++ ++.++ .|++||+.++ +
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~--g~~~~~l~~~~~--~v~~~~~Spdg~~la~-~s~~~~~~~i~~~d~~tg-~ 214 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYD--GYNQFVVHRSPQ--PLMSPAWSPDGSKLAY-VTFESGRSALVIQTLANG-A 214 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETT--SCSCEEEEEESS--CEEEEEECTTSSEEEE-EECTTSSCEEEEEETTTC-C
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCC--CCCCEEEeCCCC--cceeeEEcCCCCEEEE-EEecCCCcEEEEEECCCC-c
Confidence 333333 2 2 799999985 344566666653 4888999999999998 66664 9999999985 3
Q ss_pred CCcccccccCCeEEEEEccCCCEEE-EEecC--CcEEEEEECCCcceeeEEec---ceeeeeecCCCCeEEEEeecCC--
Q psy3710 177 PPLDIAAHEAPLSCIALNQTGTRLA-TASYK--GTLIRVFDTGSGQKLNELRR---GLCVLCPNSNNSLLAFPGRKSG-- 248 (424)
Q Consensus 177 ~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d--~~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~dg-- 248 (424)
...+..|...+.+++|+|+|+.|+ +++.+ .. |++||+.+++.. .+.. ....++|+|++..+++++..++
T Consensus 215 -~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~-i~~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 215 -VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLN-LYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp -EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCE-EEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred -EEEeecCCCcccCEEEcCCCCEEEEEEecCCCce-EEEEECCCCCEE-eCcCCCCcccceEECCCCCEEEEEECCCCCc
Confidence 345677888999999999999888 55544 45 899999887753 3332 3677899999999988665566
Q ss_pred eEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEECCCCceee----------eeccCCcEE
Q psy3710 249 HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK---GTLIRVFDTGSGQKLN----------ELRRDSSYL 315 (424)
Q Consensus 249 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~~i~iwd~~~~~~~~----------~~~~~~~~l 315 (424)
.|++||+.+++ ...+..+...+.+++|+|||++|++++.+ .. |++||+.+++... .|+|+|++|
T Consensus 292 ~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~-i~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l 368 (415)
T 2hqs_A 292 QVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQH-IAKQDLATGGVQVLSSTFLDETPSLAPNGTMV 368 (415)
T ss_dssp EEEEEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEE-EEEEETTTCCEEECCCSSSCEEEEECTTSSEE
T ss_pred EEEEEECCCCC--EEEEecCCCcccCeEECCCCCEEEEEECcCCceE-EEEEECCCCCEEEecCCCCcCCeEEcCCCCEE
Confidence 67788988765 33444677789999999999999998875 46 9999999876532 467999999
Q ss_pred EEEeCCC---cEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCC
Q psy3710 316 CVSSDHG---TVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSN 377 (424)
Q Consensus 316 ~~~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 377 (424)
++++.++ .|++||+..+ ...+ +..+.+.+..++|+|...
T Consensus 369 ~~~s~~~~~~~l~~~d~~g~-~~~~----------------------l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 369 IYSSSQGMGSVLNLVSTDGR-FKAR----------------------LPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEEETTEEEEEEEETTSC-CEEE----------------------CCCSSSEEEEEEECCCCC
T ss_pred EEEEcCCCccEEEEEECCCC-cEEE----------------------eeCCCCCCcCCccccccc
Confidence 9988877 7999998753 3222 223445678889998654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=217.55 Aligned_cols=303 Identities=16% Similarity=0.105 Sum_probs=214.1
Q ss_pred eEEEEECCCCCeeEeecCCeEEEEeCCcCcc--ccccccc----------------CCCeeeEEEeccCceEEEEeCCcC
Q psy3710 13 LLYAGFNQDQGCFACGMEDGFRIYNCDPLKE--KERQDFT----------------DGGLGHVEMLFRCNYLALVGGGTH 74 (424)
Q Consensus 13 V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~--~~~~~~~----------------~~~i~~~~~~~~~~~l~~~~~~~~ 74 (424)
+..+.|. |+.+++++.++| +||+.+++. ......+ ...+..++|+|+ +.++++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~---- 99 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDDL-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT---- 99 (706)
T ss_dssp CTTCEEE--TTEEEEEETTEE-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE----
T ss_pred CCCCcCc--CCeEEEEeCCcE-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE----
Confidence 4456777 666776667779 999998876 3322211 146889999999 7777766
Q ss_pred CCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe--eccEEEEeecCC-----CceeEEEeeCCCC------
Q psy3710 75 PKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQC-----PQQLHVFETNPNP------ 141 (424)
Q Consensus 75 ~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~-----~~~~~~~~~~~~~------ 141 (424)
++.+++||+.+++......+...+.+++|+||+..+++ ++.|++|++. + ++...........
T Consensus 100 ----~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~-~~~~~~g~~~~~~~~~~~~~~~g~~ 174 (706)
T 2z3z_A 100 ----QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGG-KLGEGMSRAIAVTIDGTETLVYGQA 174 (706)
T ss_dssp ----TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECB-CTTSCCCCCEESCSCCBTTEEESSC
T ss_pred ----CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecC-cccccCCCcEEeccCCCCCeEcccc
Confidence 68999999998877666667788999999999977765 8999999997 4 4443322222111
Q ss_pred ------CeeEEEeecCCCCeEEEeec---------------------------------cCCeEEEEeCCCCCCCCccc-
Q psy3710 142 ------KGLCVLCPNSNNSLLAFPGR---------------------------------KSGHVHLVDLADPERPPLDI- 181 (424)
Q Consensus 142 ------~~~~~~~~~~~~~~l~~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~- 181 (424)
..+..+.|+|||++|++ ++ .+..|.+||+.++ ......
T Consensus 175 ~~~ee~~~~~~~~~SpDg~~la~-~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~-~~~~~~~ 252 (706)
T 2z3z_A 175 VHQREFGIEKGTFWSPKGSCLAF-YRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG-KTVYLQT 252 (706)
T ss_dssp CGGGCTTCCCSEEECTTSSEEEE-EEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT-EEEECCC
T ss_pred hhhhhcCCCceEEECCCCCEEEE-EEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC-ceEeecc
Confidence 01357889999999998 54 4578999999875 222222
Q ss_pred -ccccCCeEEEEEccCCCEEEEEecCC-----cEEEEEECCCcceeeEEe-c--c-----eeeeeecC--CCCeEEEEee
Q psy3710 182 -AAHEAPLSCIALNQTGTRLATASYKG-----TLIRVFDTGSGQKLNELR-R--G-----LCVLCPNS--NNSLLAFPGR 245 (424)
Q Consensus 182 -~~~~~~v~~~~~~~~~~~l~~~~~d~-----~~i~iwd~~~~~~~~~~~-~--~-----~~~~~~~~--~~~~~~~~~~ 245 (424)
..|...+.+++|+|||+.|++++.++ . |++||+.+++....+. . . ...++++| ++. +++++.
T Consensus 253 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~-v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~ 330 (706)
T 2z3z_A 253 GEPKEKFLTNLSWSPDENILYVAEVNRAQNECK-VNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSR 330 (706)
T ss_dssp CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEE-EEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEEC
T ss_pred CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeE-EEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-EEEEEc
Confidence 25667899999999999999988776 7 9999999984333332 1 1 24568999 877 555688
Q ss_pred cCCeEEEEeCCCCCCCCeeeccCCCCeEE-EEEcCCCCEEEEEeCC-C----cEEEEEECCCCcee----------eeec
Q psy3710 246 KSGHVHLVDLADPERPPLDIAAHEAPLSC-IALNQTGTRLATASYK-G----TLIRVFDTGSGQKL----------NELR 309 (424)
Q Consensus 246 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d-~----~~i~iwd~~~~~~~----------~~~~ 309 (424)
.++.+++|++.........+..|...+.. ++|+|+|+.|+.++.+ + . |..||+.+++.. ..|+
T Consensus 331 ~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~-l~~~d~~~~~~~~l~~~~~~~~~~~s 409 (706)
T 2z3z_A 331 RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERH-FYCIDIKGGKTKDLTPESGMHRTQLS 409 (706)
T ss_dssp TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBE-EEEEETTCCCCEESCCSSSEEEEEEC
T ss_pred cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEE-EEEEEcCCCCceeccCCCceEEEEEC
Confidence 88989998876333344556677777877 7999999988766554 3 4 888888776422 2478
Q ss_pred cCCcEEEEEeCC----CcEEEEEccccc
Q psy3710 310 RDSSYLCVSSDH----GTVHVFSVDEAQ 333 (424)
Q Consensus 310 ~~~~~l~~~~~d----~~i~iw~~~~~~ 333 (424)
|+|++++....+ +.|++||+.+++
T Consensus 410 pdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 410 PDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp TTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 999988876543 569999998875
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-25 Score=215.21 Aligned_cols=292 Identities=13% Similarity=0.107 Sum_probs=210.6
Q ss_pred cCCeEEEEecCCceEEEe----ec-----cEEEEeecCCCceeEEEeeCCCC----------------------CeeEEE
Q psy3710 99 NAPVKGVRLRRDKIVVVL----EG-----LIKVYTFIQCPQQLHVFETNPNP----------------------KGLCVL 147 (424)
Q Consensus 99 ~~~v~~~~~~~~~~~~~~----~~-----~i~v~~~~~~~~~~~~~~~~~~~----------------------~~~~~~ 147 (424)
...+.+++|+||+..+++ ++ .|++||+. +++....+..+... ..+..+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIG-SGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETT-TCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECC-CCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 456899999999987775 45 79999996 66655555443322 235678
Q ss_pred eecCCCCeEEEeeccCCeEEEEeCCCCCC-CCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEec
Q psy3710 148 CPNSNNSLLAFPGRKSGHVHLVDLADPER-PPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR 226 (424)
Q Consensus 148 ~~~~~~~~l~~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~ 226 (424)
+|+|||++|++ ++. +.|++||+.++.. ....+..|...+..++|+|||++|++++. +. |++||+.+++.......
T Consensus 115 ~~SpDg~~l~~-~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~-i~~~d~~~g~~~~~~~~ 190 (741)
T 2ecf_A 115 QWSPDAQRLLF-PLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RN-LWVIDLASGRQMQLTAD 190 (741)
T ss_dssp EECTTSSEEEE-EET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TE-EEEEETTTTEEEECCCC
T ss_pred EECCCCCEEEE-EeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-Cc-EEEEecCCCCEEEeccC
Confidence 99999999998 554 9999999987510 45567778889999999999999999875 57 99999998876544332
Q ss_pred c-------------------eeeeeecCCCCeEEEEeecCC--------------------------------eEEEEeC
Q psy3710 227 G-------------------LCVLCPNSNNSLLAFPGRKSG--------------------------------HVHLVDL 255 (424)
Q Consensus 227 ~-------------------~~~~~~~~~~~~~~~~~~~dg--------------------------------~i~i~d~ 255 (424)
+ ...++|+|+++.++++....+ .|++||+
T Consensus 191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~ 270 (741)
T 2ecf_A 191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP 270 (741)
T ss_dssp CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence 2 256899999999998554332 8889999
Q ss_pred CC-CCCCCeeec-cCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEEECCCCceee----------------eeccCC
Q psy3710 256 AD-PERPPLDIA-AHEAPLSCIALNQTGTRLATASY-----KGTLIRVFDTGSGQKLN----------------ELRRDS 312 (424)
Q Consensus 256 ~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----d~~~i~iwd~~~~~~~~----------------~~~~~~ 312 (424)
.+ ++....... .|...+..++| |||++|++++. +.. |++||+.+++... .|+|||
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~-i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 271 AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLD-LVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEE-EEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTS
T ss_pred CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEE-EEEEECCCCceEEEEEcCCCCcCCcCCceEECCCC
Confidence 87 653222221 47788999999 99999998764 456 9999999876432 367899
Q ss_pred cEEEEEeCCCcEEEEEccc-cccccccccceeeeccCccccCCceeeEEeecCCCceEE-EEecCCCeEEEEe-ccC--c
Q psy3710 313 SYLCVSSDHGTVHVFSVDE-AQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCIC-AFGADSNSIIVIC-ADG--S 387 (424)
Q Consensus 313 ~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~l~~~~-~dg--~ 387 (424)
+++++++.||.++||.+.. ++ ...+. .+...+..+ +|+||++.|++.+ .++ .
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~~-~~~l~----------------------~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~ 405 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKGK-AAALT----------------------HGNWSVDELLAVDEKAGLAYFRAGIESARE 405 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSSC-EEESC----------------------CSSSCEEEEEEEETTTTEEEEEECSSCTTC
T ss_pred eEEEEecCCCccEEEEEcCCCC-eeeee----------------------ecceEEEeEeEEeCCCCEEEEEEeCCCCce
Confidence 9999999999888887762 22 22111 122334455 6999999886554 455 8
Q ss_pred EEEEEecCCcceeee----eehhhheecCCCceeeEE
Q psy3710 388 YYKFMFNSKGECWRD----VYIQFLEMTNDSNLLSCI 420 (424)
Q Consensus 388 v~~~~~~~~~~~~~~----~~~~~~~~~~d~~~l~~~ 420 (424)
+++|+++..+...+. .....+.++|||++|+..
T Consensus 406 ~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~ 442 (741)
T 2ecf_A 406 SQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDS 442 (741)
T ss_dssp BEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEE
T ss_pred EEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEE
Confidence 999999754443221 223457899999998764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=190.56 Aligned_cols=275 Identities=12% Similarity=0.110 Sum_probs=197.8
Q ss_pred EEECCCCCe-eEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcE-
Q psy3710 16 AGFNQDQGC-FACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQV- 92 (424)
Q Consensus 16 ~~~s~~g~~-la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~- 92 (424)
..|.+++.+ ++++..++ |.+||.++++.......+.... .++++|+++.+++++.. ++.|.+||..+++.
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~------~~~i~~~d~~~~~~~ 75 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDF------CQTLVQIETQLEPPK 75 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEEST------TCEEEEEECSSSSCE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCC------CCeEEEEECCCCcee
Confidence 456776665 44666555 9999999988865555555556 89999999988888753 68999999999987
Q ss_pred EEEEeecCCeEE-EEecCCceEEEe---e-c--cEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCe
Q psy3710 93 VICLEFNAPVKG-VRLRRDKIVVVL---E-G--LIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGH 165 (424)
Q Consensus 93 ~~~~~~~~~v~~-~~~~~~~~~~~~---~-~--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~ 165 (424)
...+........ ++|+|++..++. + + .|.+||+. .++.+..+.... ....++++|+++++++++..++.
T Consensus 76 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~ 151 (331)
T 3u4y_A 76 VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL-KNKFISTIPIPY---DAVGIAISPNGNGLILIDRSSAN 151 (331)
T ss_dssp EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETT-TTEEEEEEECCT---TEEEEEECTTSSCEEEEEETTTT
T ss_pred EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECC-CCCeEEEEECCC---CccceEECCCCCEEEEEecCCCc
Confidence 666765444455 999999976665 3 3 89999996 677776665543 24788999999987775666688
Q ss_pred -EEEEeCCCCCCCC---cccccccCCeEEEEEccCCCEEEEEe-cCCcEEEEEECCCcce---eeEEecc--eeeeeecC
Q psy3710 166 -VHLVDLADPERPP---LDIAAHEAPLSCIALNQTGTRLATAS-YKGTLIRVFDTGSGQK---LNELRRG--LCVLCPNS 235 (424)
Q Consensus 166 -i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~~i~iwd~~~~~~---~~~~~~~--~~~~~~~~ 235 (424)
|.+|++....... ............++|+|+|++++.++ .++. |.+||+.+++. +..+..+ ...++++|
T Consensus 152 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~d~~~~~~~~~~~~~~~~~~~~~~~~sp 230 (331)
T 3u4y_A 152 TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNS-IGILETQNPENITLLNAVGTNNLPGTIVVSR 230 (331)
T ss_dssp EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTE-EEEEECSSTTSCEEEEEEECSSCCCCEEECT
T ss_pred eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCe-EEEEECCCCcccceeeeccCCCCCceEEECC
Confidence 9999998642211 11113345679999999999665554 5778 99999999887 7666644 56789999
Q ss_pred CCCeEEEEeecCCeEEEEeCCCCCCC-Ceeecc----CCC---CeEEEEEcCCCCEEEEEeCC-CcEEEEEECCCCc
Q psy3710 236 NNSLLAFPGRKSGHVHLVDLADPERP-PLDIAA----HEA---PLSCIALNQTGTRLATASYK-GTLIRVFDTGSGQ 303 (424)
Q Consensus 236 ~~~~~~~~~~~dg~i~i~d~~~~~~~-~~~~~~----~~~---~v~~~~~~~~~~~l~~~~~d-~~~i~iwd~~~~~ 303 (424)
+++.++++...++.|.+||+.+++.. ...+.. +.. ....++|+|||++|++++.+ +. |.+||+....
T Consensus 231 dg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~d~~~~~ 306 (331)
T 3u4y_A 231 DGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRE-LKVFTISGKV 306 (331)
T ss_dssp TSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTE-EEEEETTSCE
T ss_pred CCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCc-EEEEEecCCc
Confidence 99998887777889999999876531 111111 111 22558999999988776665 46 8999987644
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-25 Score=212.53 Aligned_cols=302 Identities=11% Similarity=0.085 Sum_probs=210.3
Q ss_pred CceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCC---CeeeEEEeccCceEEEEeCCcCC--CcCCCeEEE
Q psy3710 11 NGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDG---GLGHVEMLFRCNYLALVGGGTHP--KYPNNRVMI 84 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~~~~~--~~~d~~i~i 84 (424)
..+.+++|+|||++++++ .++ |++||+.+++.......+.. .+..++|+|+++++++++..... ...++.+.+
T Consensus 17 ~~~~~~~~spdg~~~~~~-~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYRE-QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCCBSSSSCBCCCC-SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccccEEcCCCcEEEEe-CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 346789999999988774 455 99999998877554544443 48899999999999998743210 012489999
Q ss_pred EECCCCcEEEEEe----ecCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCC----------------
Q psy3710 85 WDDLKKQVVICLE----FNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPK---------------- 142 (424)
Q Consensus 85 wd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~---------------- 142 (424)
||+.+++. ..+. +...+..++|+||+..++. ++.|++|++. +++.......+....
T Consensus 96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~-~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~ 173 (723)
T 1xfd_A 96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHV-GKQAIRVVSTGKEGVIYNGLSDWLYEEEILK 173 (723)
T ss_dssp EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSS-SSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred EECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECC-CCceEEEecCCCCCceECcccceeEEEEecc
Confidence 99998876 3333 2334889999999977765 7899999986 555544443322221
Q ss_pred eeEEEeecCCCCeEEEeeccCC----------------------------------eEEEEeCCCCCCCCcccccc----
Q psy3710 143 GLCVLCPNSNNSLLAFPGRKSG----------------------------------HVHLVDLADPERPPLDIAAH---- 184 (424)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~~---- 184 (424)
....+.|+|||+.|++ ++.++ .|++||+.++ .....+..+
T Consensus 174 ~~~~~~~SpDg~~la~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~-~~~~~l~~~~~~~ 251 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAY-AAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP-THDLEMMPPDDPR 251 (723)
T ss_dssp SSEEEEECTTSSEEEE-EEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS-CCCEECCCCCCGG
T ss_pred CcceEEECCCCCEEEE-EEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC-ceeEEeeCCccCC
Confidence 2267899999999998 54432 7999999876 333444433
Q ss_pred --cCCeEEEEEccCCCEEEEEecC----CcEEEEEECCCcceeeEEecc----e----eeeeecCCCCeEEEE-eecCC-
Q psy3710 185 --EAPLSCIALNQTGTRLATASYK----GTLIRVFDTGSGQKLNELRRG----L----CVLCPNSNNSLLAFP-GRKSG- 248 (424)
Q Consensus 185 --~~~v~~~~~~~~~~~l~~~~~d----~~~i~iwd~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~-~~~dg- 248 (424)
...+..++|+|||+++++.+.. .. |++||+.+++....+..+ + ..++|+|+++.+++. +..++
T Consensus 252 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~-i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 330 (723)
T 1xfd_A 252 MREYYITMVKWATSTKVAVTWLNRAQNVSI-LTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG 330 (723)
T ss_dssp GSSEEEEEEEESSSSEEEEEEEETTSCEEE-EEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSS
T ss_pred CccceeEEEEEeCCCeEEEEEEcCCCCeEE-EEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCC
Confidence 6678999999999988776543 45 999999998876654322 2 367899999998886 56677
Q ss_pred -----eEEEEeC-CCCCC-CCeeeccCCCCeEE-EEEcCCCCEEEEEeCC---CcEEEEEECCCCc--e-----------
Q psy3710 249 -----HVHLVDL-ADPER-PPLDIAAHEAPLSC-IALNQTGTRLATASYK---GTLIRVFDTGSGQ--K----------- 304 (424)
Q Consensus 249 -----~i~i~d~-~~~~~-~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d---~~~i~iwd~~~~~--~----------- 304 (424)
.|++||+ ..+.. ....+..+...+.. ++|+|||+.|+..+.+ +. +++|++.... .
T Consensus 331 ~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~-~~l~~~~~~~~~~~~~l~~~~~~~ 409 (723)
T 1xfd_A 331 RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRR-RQLYSANTVGNFNRQCLSCDLVEN 409 (723)
T ss_dssp SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTC-CEEEEECSSTTCCCBCSSTTSSSS
T ss_pred CcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcc-eEEEEEeCCCCCCcceecccccCC
Confidence 5777773 33320 12333334444554 6999999999877665 67 8999875321 1
Q ss_pred ----eeeeccCCcEEEEEe
Q psy3710 305 ----LNELRRDSSYLCVSS 319 (424)
Q Consensus 305 ----~~~~~~~~~~l~~~~ 319 (424)
...|+|+|++++...
T Consensus 410 ~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 410 CTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp CCCCEEEECTTSSEEEEEC
T ss_pred CCeEEEEECCCCCEEEEEc
Confidence 124678888877654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-24 Score=188.51 Aligned_cols=268 Identities=15% Similarity=0.069 Sum_probs=206.3
Q ss_pred cCCceEEEEECCCCCeeEeecC-------Ce-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCC
Q psy3710 9 YKNGLLYAGFNQDQGCFACGME-------DG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNN 80 (424)
Q Consensus 9 h~~~V~~~~~s~~g~~la~g~~-------~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~ 80 (424)
....+..++|+|+|+++++++. ++ |.+||..+++....... ......+.++++++.++++... ++
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~------~~ 111 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTV------NS 111 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETT------TT
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecC------CC
Confidence 4567889999999998887663 34 99999998877555444 3456789999999988777653 68
Q ss_pred eEEEEECCCCcEEEEEeecC----------CeEEEEecCCceEEEe-----eccEEEEeecCCCceeEEEeeCCCCCeeE
Q psy3710 81 RVMIWDDLKKQVVICLEFNA----------PVKGVRLRRDKIVVVL-----EGLIKVYTFIQCPQQLHVFETNPNPKGLC 145 (424)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~~~-----~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 145 (424)
.|.+||..+++.+..+.... .+.+++|+|++..++. ++.|.+||.. +.+....+..... ...
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~--~~~ 188 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG-NIKLKTAIQNTGK--MST 188 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT-TTEEEEEECCCCT--TCC
T ss_pred EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC-CCceEEEecCCCC--ccc
Confidence 99999999999988887422 2788999999854443 4679999996 6777776663332 244
Q ss_pred EEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCccccc----ccCCeEEEEEccCCCEEEEEecC-CcEEEEEECCCcce
Q psy3710 146 VLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAA----HEAPLSCIALNQTGTRLATASYK-GTLIRVFDTGSGQK 220 (424)
Q Consensus 146 ~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d-~~~i~iwd~~~~~~ 220 (424)
.+.++|+++.+++ +..++.|.+||+.++ +....+.. +...+..++|+|++++++.++.+ +. |.+||..+++.
T Consensus 189 ~~~~s~dg~~l~~-~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~~~d~~~~~~ 265 (353)
T 3vgz_A 189 GLALDSEGKRLYT-TNADGELITIDTADN-KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE-VLVVDTRNGNI 265 (353)
T ss_dssp CCEEETTTTEEEE-ECTTSEEEEEETTTT-EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE-EEEEETTTCCE
T ss_pred eEEECCCCCEEEE-EcCCCeEEEEECCCC-eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE-EEEEECCCCcE
Confidence 5788999999998 778999999999876 44444332 45668899999999987777655 77 99999999988
Q ss_pred eeEEecc-eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCC
Q psy3710 221 LNELRRG-LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKG 291 (424)
Q Consensus 221 ~~~~~~~-~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 291 (424)
+..+..+ ...++++|+++.++++...++.|.+||..+++. ...+. ....+.+++|+|+|++|+.+..++
T Consensus 266 ~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 266 LAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV-VKTFD-TPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEEEE-CCSEEEEEEECTTSCEEEEEEECC
T ss_pred EEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeE-EEEEe-cCCCCCeEEEcCCCCEEEEEEccc
Confidence 8777644 456889999999888777899999999988653 23332 344789999999999888777664
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-24 Score=189.19 Aligned_cols=251 Identities=14% Similarity=0.137 Sum_probs=193.9
Q ss_pred CCCeEEEEECCCCcEEEEEeecC---CeEEEEecCCceEE-Ee---eccEEEEeecCCCceeEEEeeCCC---CCeeEEE
Q psy3710 78 PNNRVMIWDDLKKQVVICLEFNA---PVKGVRLRRDKIVV-VL---EGLIKVYTFIQCPQQLHVFETNPN---PKGLCVL 147 (424)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~-~~---~~~i~v~~~~~~~~~~~~~~~~~~---~~~~~~~ 147 (424)
.++.|.+||..+++.+..+.... .+..++|+|++..+ ++ ++.|.+||+. +++.+..+..... ...+..+
T Consensus 9 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~ 87 (337)
T 1pby_B 9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV-TGETLGRIDLSTPEERVKSLFGA 87 (337)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT-TCCEEEEEECCBTTEEEECTTCE
T ss_pred CCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC-CCCeEeeEEcCCcccccccccce
Confidence 47999999999999998888666 68999999998543 33 6789999986 6666666654220 0023457
Q ss_pred eecCCCCeEEEeec------------cCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEEC
Q psy3710 148 CPNSNNSLLAFPGR------------KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDT 215 (424)
Q Consensus 148 ~~~~~~~~l~~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~ 215 (424)
.++|+++++++ +. .++.|.+||+.++ +....+.. ...+.+++|+|+|++++++ ++. |++||+
T Consensus 88 ~~s~dg~~l~~-~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~-i~~~d~ 161 (337)
T 1pby_B 88 ALSPDGKTLAI-YESPVRLELTHFEVQPTRVALYDAETL-SRRKAFEA-PRQITMLAWARDGSKLYGL--GRD-LHVMDP 161 (337)
T ss_dssp EECTTSSEEEE-EEEEEEECSSCEEECCCEEEEEETTTT-EEEEEEEC-CSSCCCEEECTTSSCEEEE--SSS-EEEEET
T ss_pred EECCCCCEEEE-EecccccccccccccCceEEEEECCCC-cEEEEEeC-CCCcceeEECCCCCEEEEe--CCe-EEEEEC
Confidence 88999999888 54 5799999999875 44444433 4567889999999988887 577 999999
Q ss_pred CCcceeeEEecce--eeeeecCCCCeEEEEeecCC-----------------------eEEEEeCCCCCCCCeeeccCCC
Q psy3710 216 GSGQKLNELRRGL--CVLCPNSNNSLLAFPGRKSG-----------------------HVHLVDLADPERPPLDIAAHEA 270 (424)
Q Consensus 216 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~dg-----------------------~i~i~d~~~~~~~~~~~~~~~~ 270 (424)
.+++....+..+. ....++|++..+++++..++ .|.+||+.+++.....+..+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 241 (337)
T 1pby_B 162 EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241 (337)
T ss_dssp TTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSS
T ss_pred CCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCC
Confidence 9998887776543 45578888887776554444 4689999987644334456777
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeee-----------eccCCcEEEEEeCCCcEEEEEcccccccccc
Q psy3710 271 PLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE-----------LRRDSSYLCVSSDHGTVHVFSVDEAQKINKQ 338 (424)
Q Consensus 271 ~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~-----------~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 338 (424)
.+.+++|+|+|++++++ ++. |.+||+.+++.+.. |+|+|++|++++.++.|++||+.+++.+...
T Consensus 242 ~~~~~~~s~dg~~l~~~--~~~-v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 242 FYFSTAVNPAKTRAFGA--YNV-LESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp CEEEEEECTTSSEEEEE--ESE-EEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred ceeeEEECCCCCEEEEe--CCe-EEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEE
Confidence 88999999999999988 677 99999999877654 4689999999999999999999998765543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-23 Score=183.92 Aligned_cols=256 Identities=11% Similarity=0.076 Sum_probs=187.5
Q ss_pred eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCC-CcccccccCCeEEEEEcc
Q psy3710 117 EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERP-PLDIAAHEAPLSCIALNQ 195 (424)
Q Consensus 117 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~ 195 (424)
++.|.+||.. +++....+..+. ... .++++|+++++++++..++.|.+||+.++ +. ...+..+..+..+++|+|
T Consensus 19 ~~~v~~~d~~-~~~~~~~~~~~~--~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~s~ 93 (331)
T 3u4y_A 19 LRRISFFSTD-TLEILNQITLGY--DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE-PPKVVAIQEGQSSMADVDITP 93 (331)
T ss_dssp GTEEEEEETT-TCCEEEEEECCC--CEE-EEEECSSSCEEEEEESTTCEEEEEECSSS-SCEEEEEEECSSCCCCEEECT
T ss_pred CCeEEEEeCc-ccceeeeEEccC--Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC-ceeEEecccCCCCccceEECC
Confidence 7899999996 677776666443 334 88999999988775666899999999986 44 556666666666699999
Q ss_pred CCCEEEEEecCC---cEEEEEECCCcceeeEEecc--eeeeeecCCCCeEEEEeecCCe-EEEEeCCCCCCCC---eeec
Q psy3710 196 TGTRLATASYKG---TLIRVFDTGSGQKLNELRRG--LCVLCPNSNNSLLAFPGRKSGH-VHLVDLADPERPP---LDIA 266 (424)
Q Consensus 196 ~~~~l~~~~~d~---~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~dg~-i~i~d~~~~~~~~---~~~~ 266 (424)
+|++++++..++ . |.+||+.+++.+..+..+ ...++++|+++.+++++..++. |.+|++....... ....
T Consensus 94 dg~~l~~~~~~~~~~~-i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 172 (331)
T 3u4y_A 94 DDQFAVTVTGLNHPFN-MQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI 172 (331)
T ss_dssp TSSEEEECCCSSSSCE-EEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE
T ss_pred CCCEEEEecCCCCccc-EEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc
Confidence 999999655553 7 999999999888777644 6788999999988887888788 9999998644321 1111
Q ss_pred cCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEECCCCce---eee-----------eccCCcEEEEEe-CCCcEEEEEcc
Q psy3710 267 AHEAPLSCIALNQTGTRLATAS-YKGTLIRVFDTGSGQK---LNE-----------LRRDSSYLCVSS-DHGTVHVFSVD 330 (424)
Q Consensus 267 ~~~~~v~~~~~~~~~~~l~~~~-~d~~~i~iwd~~~~~~---~~~-----------~~~~~~~l~~~~-~d~~i~iw~~~ 330 (424)
.....+..++|+|+|++++.++ .++. |++||+.+++. +.. |+|+|+++++++ .++.|.+||+.
T Consensus 173 ~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~ 251 (331)
T 3u4y_A 173 SGGTRPFNITFTPDGNFAFVANLIGNS-IGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQL 251 (331)
T ss_dssp CSSSSEEEEEECTTSSEEEEEETTTTE-EEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred cCCCCccceEECCCCCEEEEEeCCCCe-EEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence 3455689999999999766655 5777 99999999887 543 568999776654 57889999999
Q ss_pred cccc--ccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEec-cCcEEEEEec
Q psy3710 331 EAQK--INKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICA-DGSYYKFMFN 394 (424)
Q Consensus 331 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~~~~~~ 394 (424)
+++. +...... ....+. +......++|+||+++|++++. ++.|.+|++.
T Consensus 252 ~~~~~~~~~~~~~--~~~~~~-------------~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 252 SGTLSFVKSFGHG--LLIDPR-------------PLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp TTEEEEEEEEECC--CCCCCG-------------GGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CCceeeecccccc--cccCCC-------------CcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 8765 1111100 000000 0011245799999999977665 5699999997
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-23 Score=183.01 Aligned_cols=272 Identities=16% Similarity=0.147 Sum_probs=203.8
Q ss_pred CCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEE-e---eccEEEEeec
Q psy3710 51 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVV-L---EGLIKVYTFI 126 (424)
Q Consensus 51 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~---~~~i~v~~~~ 126 (424)
......++++++++.+++++........++.|.+||..+++.+..+.....+..++++|++..++ + ++.|.+||..
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 44577899999999998877432111126799999999999999998877889999999986433 3 6899999996
Q ss_pred CCCceeEEEeeCCCC-------CeeEEEeecCCCCeEEEee-ccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCC
Q psy3710 127 QCPQQLHVFETNPNP-------KGLCVLCPNSNNSLLAFPG-RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT 198 (424)
Q Consensus 127 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 198 (424)
+++.+..+..+... .....+.++|+++.+++++ ..++.|.+||..++ +....+..+...+..++|+|+|+
T Consensus 120 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 120 -TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI-KLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp -TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT-EEEEEECCCCTTCCCCEEETTTT
T ss_pred -CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC-ceEEEecCCCCccceEEECCCCC
Confidence 67777777654322 2367789999999888744 35889999999876 45555554566688999999999
Q ss_pred EEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEc
Q psy3710 199 RLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALN 278 (424)
Q Consensus 199 ~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 278 (424)
++++++.++. |.+||..+++....+..+ . .++...+..++|+
T Consensus 198 ~l~~~~~~~~-i~~~d~~~~~~~~~~~~~-------------------------------~------~~~~~~~~~~~~s 239 (353)
T 3vgz_A 198 RLYTTNADGE-LITIDTADNKILSRKKLL-------------------------------D------DGKEHFFINISLD 239 (353)
T ss_dssp EEEEECTTSE-EEEEETTTTEEEEEEECC-------------------------------C------SSSCCCEEEEEEE
T ss_pred EEEEEcCCCe-EEEEECCCCeEEEEEEcC-------------------------------C------CCCCcccceEEEC
Confidence 9999999999 999999998877665421 0 0344567888999
Q ss_pred CCCCEEEEEeCC-CcEEEEEECCCCceeee----------eccCCcEEEEEe-CCCcEEEEEccccccccccccceeeec
Q psy3710 279 QTGTRLATASYK-GTLIRVFDTGSGQKLNE----------LRRDSSYLCVSS-DHGTVHVFSVDEAQKINKQSSLASASF 346 (424)
Q Consensus 279 ~~~~~l~~~~~d-~~~i~iwd~~~~~~~~~----------~~~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~ 346 (424)
|+++++++++.+ +. |.+||+.+++.+.. |+|+++++++++ .++.|.+||+.+++.+.....
T Consensus 240 ~dg~~l~~~~~~~~~-v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~------ 312 (353)
T 3vgz_A 240 TARQRAFITDSKAAE-VLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT------ 312 (353)
T ss_dssp TTTTEEEEEESSSSE-EEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC------
T ss_pred CCCCEEEEEeCCCCE-EEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec------
Confidence 998877776655 66 99999988877654 567888655554 689999999988765433211
Q ss_pred cCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccC
Q psy3710 347 LPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADG 386 (424)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 386 (424)
...+..++|+|||++|+++..++
T Consensus 313 -----------------~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 313 -----------------PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp -----------------CSEEEEEEECTTSCEEEEEEECC
T ss_pred -----------------CCCCCeEEEcCCCCEEEEEEccc
Confidence 12346789999999888877764
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-24 Score=206.41 Aligned_cols=275 Identities=13% Similarity=0.123 Sum_probs=203.5
Q ss_pred CceEEEEECCCCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC-
Q psy3710 11 NGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK- 89 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~- 89 (424)
..|.+++|||| +.++.+.+..|++||+.+++..... .+.+.+..++|+|+++.++++. |+.|++||+.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~SpdG~~la~~~--------~~~i~v~~~~~~ 151 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTYLF-DTNEETASLDFSPVGDRVAYVR--------NHNLYIARGGKL 151 (706)
T ss_dssp CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEEEE-CCTTCCTTCEECTTSSEEEEEE--------TTEEEEEECBCT
T ss_pred cCceeEEECCC-CeEEEEECCEEEEEECCCCceEEcc-CCcccccCCcCCCCCCEEEEEE--------CCeEEEEecCcc
Confidence 57999999999 7777666666999999887654332 3466788899999999999865 78999999988
Q ss_pred ----CcEEEEEee-cCC--------------eEEEEecCCceEEEe-e--------------------------------
Q psy3710 90 ----KQVVICLEF-NAP--------------VKGVRLRRDKIVVVL-E-------------------------------- 117 (424)
Q Consensus 90 ----~~~~~~~~~-~~~--------------v~~~~~~~~~~~~~~-~-------------------------------- 117 (424)
++....... ... +.++.|+||+..+++ .
T Consensus 152 ~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~ 231 (706)
T 2z3z_A 152 GEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP 231 (706)
T ss_dssp TSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred cccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence 776654442 222 489999999977765 2
Q ss_pred ---ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCC-----eEEEEeCCCCCCCCcccc--cccC-
Q psy3710 118 ---GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSG-----HVHLVDLADPERPPLDIA--AHEA- 186 (424)
Q Consensus 118 ---~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg-----~i~i~d~~~~~~~~~~~~--~~~~- 186 (424)
..|.+||+. +++.............+..++|+||++.|++ ++.++ .|.+||+.++ .....+. .+..
T Consensus 232 ~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~-~~~~~~~~~~~v~~~d~~~g-~~~~~~~~~~~~~~ 308 (706)
T 2z3z_A 232 SHHVTVGIYHLA-TGKTVYLQTGEPKEKFLTNLSWSPDENILYV-AEVNRAQNECKVNAYDAETG-RFVRTLFVETDKHY 308 (706)
T ss_dssp CCEEEEEEEETT-TTEEEECCCCSCTTCEEEEEEECTTSSEEEE-EEECTTSCEEEEEEEETTTC-CEEEEEEEEECSSC
T ss_pred CCeeEEEEEECC-CCceEeeccCCCCceeEeeEEEECCCCEEEE-EEeCCCCCeeEEEEEECCCC-ceeeEEEEccCCCe
Confidence 468999986 5544333222233356788999999999988 66554 8999999875 2223222 2222
Q ss_pred --CeEEEEEcc--CCCEEEEEecCCcEEEEEECC-CcceeeEEecc---eee-eeecCCCCeEEEEeecCC----eEEEE
Q psy3710 187 --PLSCIALNQ--TGTRLATASYKGTLIRVFDTG-SGQKLNELRRG---LCV-LCPNSNNSLLAFPGRKSG----HVHLV 253 (424)
Q Consensus 187 --~v~~~~~~~--~~~~l~~~~~d~~~i~iwd~~-~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~dg----~i~i~ 253 (424)
.+..++|+| +|+++++++.++. +++|++. +++.+..+..+ +.. ++++|+++.+++++..++ .|+.|
T Consensus 309 ~~~~~~~~~sp~~dg~~l~~~~~~g~-~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 309 VEPLHPLTFLPGSNNQFIWQSRRDGW-NHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp CCCCSCCEECTTCSSEEEEEECTTSS-CEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred ECccCCceeecCCCCEEEEEEccCCc-cEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence 246789999 9999999999998 8999876 56666666544 333 789999999998887776 77778
Q ss_pred eCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEEECCCCc
Q psy3710 254 DLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK----GTLIRVFDTGSGQ 303 (424)
Q Consensus 254 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~~i~iwd~~~~~ 303 (424)
|+.++. ...+ .|...+.+++|+|||++++..+.+ +. |++||+.+++
T Consensus 388 d~~~~~--~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~-i~l~d~~~~~ 437 (706)
T 2z3z_A 388 DIKGGK--TKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRK-VTVTNIGKGS 437 (706)
T ss_dssp ETTCCC--CEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCE-EEEEESSSCE
T ss_pred EcCCCC--ceec-cCCCceEEEEECCCCCEEEEEecCCCCCcE-EEEEECCCCe
Confidence 877654 2333 367789999999999988876443 46 9999999887
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-23 Score=183.39 Aligned_cols=266 Identities=12% Similarity=0.111 Sum_probs=183.0
Q ss_pred eEeecCCe-EEEEeCCc-Ccc-cccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECC--CCcE--EEEEe
Q psy3710 25 FACGMEDG-FRIYNCDP-LKE-KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL--KKQV--VICLE 97 (424)
Q Consensus 25 la~g~~~~-i~iw~~~~-~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~--~~~~--~~~~~ 97 (424)
+++++.++ |++|+++. ++. ......+...+..++|+|+++++++++.. ++.|.+|++. +++. +..+.
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~ 81 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRP------EFRVLAYRIAPDDGALTFAAESA 81 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETT------TTEEEEEEECTTTCCEEEEEEEE
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecC------CCeEEEEEecCCCCceeeccccc
Confidence 33435455 99999863 322 11122356678889999999999888843 4899999987 5553 34455
Q ss_pred ecCCeEEEEecCCceEEEe----eccEEEEeecCCC---ceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEe
Q psy3710 98 FNAPVKGVRLRRDKIVVVL----EGLIKVYTFIQCP---QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVD 170 (424)
Q Consensus 98 ~~~~v~~~~~~~~~~~~~~----~~~i~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d 170 (424)
....+..++|+|++..++. ++.|.+||+. .+ +....+... ..+..++++|+++++++++..++.|.+||
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 157 (343)
T 1ri6_A 82 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DGLPVGVVDVVEGL---DGCHSANISPDNRTLWVPALKQDRICLFT 157 (343)
T ss_dssp CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE-TTEEEEEEEEECCC---TTBCCCEECTTSSEEEEEEGGGTEEEEEE
T ss_pred cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC-CCccccccccccCC---CCceEEEECCCCCEEEEecCCCCEEEEEE
Confidence 4558899999999975543 6789999995 33 233333332 33567789999998888454899999999
Q ss_pred CCCCCCCCc----cccc-ccCCeEEEEEccCCCEEEEEe-cCCcEEEEEECCC--cce--eeEEe---c------ceeee
Q psy3710 171 LADPERPPL----DIAA-HEAPLSCIALNQTGTRLATAS-YKGTLIRVFDTGS--GQK--LNELR---R------GLCVL 231 (424)
Q Consensus 171 ~~~~~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~~~-~d~~~i~iwd~~~--~~~--~~~~~---~------~~~~~ 231 (424)
+.+...... .... ....+..++|+|+++++++++ .++. |.+|++.. ++. ...+. . ....+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~-i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 236 (343)
T 1ri6_A 158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS-VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI 236 (343)
T ss_dssp ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred ecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCE-EEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence 986322221 1222 335788999999999776555 7788 99999953 432 22222 1 13358
Q ss_pred eecCCCCeEEEEeecCCeEEEEeCCC--CC-CCCeeeccCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEE--CCCCc
Q psy3710 232 CPNSNNSLLAFPGRKSGHVHLVDLAD--PE-RPPLDIAAHEAPLSCIALNQTGTRLATAS-YKGTLIRVFD--TGSGQ 303 (424)
Q Consensus 232 ~~~~~~~~~~~~~~~dg~i~i~d~~~--~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~~i~iwd--~~~~~ 303 (424)
+++|+++.+++++..++.|.+||+.. +. .....+..+.. +..++|+|+|++|++++ .++. |.+|+ ..+++
T Consensus 237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~-v~v~~~d~~~g~ 312 (343)
T 1ri6_A 237 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHH-ISVYEIVGEQGL 312 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCE-EEEEEEETTTTE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCe-EEEEEEcCCCce
Confidence 99999999988788899999999984 22 12223333333 88999999999888887 5677 99994 44543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-24 Score=209.16 Aligned_cols=298 Identities=10% Similarity=0.061 Sum_probs=203.9
Q ss_pred CeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecC----CeEEEEecCCceEEEe--e---------
Q psy3710 53 GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNA----PVKGVRLRRDKIVVVL--E--------- 117 (424)
Q Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~--~--------- 117 (424)
....++|+|+++++++ + .|++|++||+.+++....+.+.. .+.+++|+||+..+++ +
T Consensus 18 ~~~~~~~spdg~~~~~-~-------~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~ 89 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-E-------QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSY 89 (723)
T ss_dssp CCCCCCBSSSSCBCCC-C-------SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCC
T ss_pred cccccEEcCCCcEEEE-e-------CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecc
Confidence 4667899999997654 3 47999999999998877776432 4999999999987775 2
Q ss_pred -ccEEEEeecCCCceeEEEeeCCC-CCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCC--------
Q psy3710 118 -GLIKVYTFIQCPQQLHVFETNPN-PKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAP-------- 187 (424)
Q Consensus 118 -~~i~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------- 187 (424)
+.+.+||+. +++. ..+..... ...+..++|+|||+.|++ ++. +.|++||+.++ ........+...
T Consensus 90 ~~~i~~~d~~-~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~-~~~-~~i~~~~~~~g-~~~~~~~~~~~~~~~~g~~~ 164 (723)
T 1xfd_A 90 TGYYVLSKIP-HGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIF-IFE-NNIYYCAHVGK-QAIRVVSTGKEGVIYNGLSD 164 (723)
T ss_dssp CSEEEEEESS-SCCC-EECCCTTCCSCCCSBCCBCSSTTCEEE-EET-TEEEEESSSSS-CCEEEECCCBTTTEEEEECC
T ss_pred eeeEEEEECC-CCce-EeccCCccccccccccEECCCCCEEEE-EEC-CeEEEEECCCC-ceEEEecCCCCCceECcccc
Confidence 688999996 4443 33332221 122556899999999998 554 79999999876 444433333333
Q ss_pred ----------eEEEEEccCCCEEEEEecCC----------------------------------cEEEEEECCCcceeeE
Q psy3710 188 ----------LSCIALNQTGTRLATASYKG----------------------------------TLIRVFDTGSGQKLNE 223 (424)
Q Consensus 188 ----------v~~~~~~~~~~~l~~~~~d~----------------------------------~~i~iwd~~~~~~~~~ 223 (424)
+.+++|+|||+.|++++.++ . |++||+.+++....
T Consensus 165 ~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-l~~~d~~~~~~~~~ 243 (723)
T 1xfd_A 165 WLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSIS-LHVIGLNGPTHDLE 243 (723)
T ss_dssp HHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEE-EEEEESSSSCCCEE
T ss_pred eeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeE-EEEEECCCCceeEE
Confidence 37899999999999987653 6 99999998876555
Q ss_pred Eec---------ceeeeeecCCCCeEEEEee---cCCeEEEEeCCCCCCCCeeeccCCCCeE----EEEEcCCCCEEEEE
Q psy3710 224 LRR---------GLCVLCPNSNNSLLAFPGR---KSGHVHLVDLADPERPPLDIAAHEAPLS----CIALNQTGTRLATA 287 (424)
Q Consensus 224 ~~~---------~~~~~~~~~~~~~~~~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~l~~~ 287 (424)
+.. .+..++|+|+++.+++... .+..|++||+.+++........+...+. .++|+|||+.|+..
T Consensus 244 l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 244 MMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp CCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred eeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence 543 2566899999987765433 2367999999887632222223344443 78999999987754
Q ss_pred --eCCC------cEEEEEE-CCCCc---e--e----------eeeccCCcEEEEEeCC---CcEEEEEccccc--ccccc
Q psy3710 288 --SYKG------TLIRVFD-TGSGQ---K--L----------NELRRDSSYLCVSSDH---GTVHVFSVDEAQ--KINKQ 338 (424)
Q Consensus 288 --~~d~------~~i~iwd-~~~~~---~--~----------~~~~~~~~~l~~~~~d---~~i~iw~~~~~~--~~~~~ 338 (424)
..++ . |.+|| ..+++ . + ..|+|+|+.|+..+.+ +.+++|++.... ....+
T Consensus 324 ~~~~~~~~~~~~~-l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l 402 (723)
T 1xfd_A 324 RAIPQGGRGKFYH-ITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCL 402 (723)
T ss_dssp EEECCSSSSCEEE-EEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCS
T ss_pred EecccCCCcceeE-EEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCccee
Confidence 4566 4 77788 33333 1 1 2478999999766655 789999987532 11111
Q ss_pred ccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEec
Q psy3710 339 SSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICA 384 (424)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 384 (424)
.. . ..+...+..++|+|||++|+....
T Consensus 403 ~~--------~-----------~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 403 SC--------D-----------LVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp ST--------T-----------SSSSCCCCEEEECTTSSEEEEECC
T ss_pred cc--------c-----------ccCCCCeEEEEECCCCCEEEEEcc
Confidence 10 0 002234667899999998887544
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=9e-23 Score=179.90 Aligned_cols=254 Identities=15% Similarity=0.152 Sum_probs=174.6
Q ss_pred eccEEEEeecCCC--ceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCC--CCCC-CCcccccccCCeEEE
Q psy3710 117 EGLIKVYTFIQCP--QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLA--DPER-PPLDIAAHEAPLSCI 191 (424)
Q Consensus 117 ~~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~--~~~~-~~~~~~~~~~~v~~~ 191 (424)
++.|++|++...+ +.+..+. +. ..+..++++|++++|++++..++.|.+|++. ++.. .+..+..+ ..+..+
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 89 (343)
T 1ri6_A 14 SQQIHVWNLNHEGALTLTQVVD-VP--GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHI 89 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEE-CS--SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEE
T ss_pred CCeEEEEEECCCCcEEEeeeEe-cC--CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEE
Confidence 7899999995333 2233332 22 3355688999999988834445999999997 3311 12233333 378999
Q ss_pred EEccCCCEEEEEec-CCcEEEEEECC---CcceeeEEec--ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCe--
Q psy3710 192 ALNQTGTRLATASY-KGTLIRVFDTG---SGQKLNELRR--GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL-- 263 (424)
Q Consensus 192 ~~~~~~~~l~~~~~-d~~~i~iwd~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-- 263 (424)
+|+|+++++++++. ++. |.+||+. ..+....+.. ....++++|++..+++++..++.|++||+.+......
T Consensus 90 ~~s~dg~~l~~~~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 168 (343)
T 1ri6_A 90 STDHQGQFVFVGSYNAGN-VSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQD 168 (343)
T ss_dssp EECTTSSEEEEEETTTTE-EEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred EEcCCCCEEEEEecCCCe-EEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeec
Confidence 99999998877665 788 9999994 4444444443 3667889999999888666899999999987332211
Q ss_pred --eec-cCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEECCC--Cce-----e---------------eeeccCCcEEEE
Q psy3710 264 --DIA-AHEAPLSCIALNQTGTRLATAS-YKGTLIRVFDTGS--GQK-----L---------------NELRRDSSYLCV 317 (424)
Q Consensus 264 --~~~-~~~~~v~~~~~~~~~~~l~~~~-~d~~~i~iwd~~~--~~~-----~---------------~~~~~~~~~l~~ 317 (424)
... .....+..++|+|+++++++++ .++. |++|++.. ++. . ..|+|++++|++
T Consensus 169 ~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~-i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v 247 (343)
T 1ri6_A 169 PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS-VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYA 247 (343)
T ss_dssp EEEEECSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEE
T ss_pred ccccccCCCCCcceEEECCCCCEEEEEeCCCCE-EEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEE
Confidence 122 2345788999999999776665 7788 99999953 321 1 246788988774
Q ss_pred -EeCCCcEEEEEcccc-ccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEe-ccCcEEEEEec
Q psy3710 318 -SSDHGTVHVFSVDEA-QKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVIC-ADGSYYKFMFN 394 (424)
Q Consensus 318 -~~~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~v~~~~~~ 394 (424)
+..++.|.+|++... ..... ...+..+. .+..++|+|++++|++++ .++.|.+|+++
T Consensus 248 ~~~~~~~i~v~d~~~~~~~~~~-------------------~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 248 CDRTASLITVFSVSEDGSVLSK-------------------EGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EETTTTEEEEEEECTTSCCEEE-------------------EEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EecCCCEEEEEEEcCCCCceEE-------------------eeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 457899999999831 11110 00111122 266889999999999888 58999999887
Q ss_pred CC
Q psy3710 395 SK 396 (424)
Q Consensus 395 ~~ 396 (424)
..
T Consensus 308 ~~ 309 (343)
T 1ri6_A 308 GE 309 (343)
T ss_dssp TT
T ss_pred CC
Confidence 53
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=181.03 Aligned_cols=252 Identities=11% Similarity=0.095 Sum_probs=189.9
Q ss_pred ecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC-CcEEEEEe-e-cCCeE
Q psy3710 28 GMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK-KQVVICLE-F-NAPVK 103 (424)
Q Consensus 28 g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~-~-~~~v~ 103 (424)
++.++ |++||+.+++... ...|.+.+..++|+|+++++++.+ ++.|++||+.+ ++...... + ...+.
T Consensus 18 ~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~--------~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS--------EGLLYRLSLAGDPSPEKVDTGFATICNN 88 (297)
T ss_dssp CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE--------TTEEEEEESSSCCSCEECCCTTCCCBCS
T ss_pred CCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc--------CCeEEEEeCCCCCCceEecccccccccc
Confidence 34555 9999998877653 333578899999999999999876 68999999998 87776555 2 36789
Q ss_pred EEEecCCceEEEe-e----ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCC
Q psy3710 104 GVRLRRDKIVVVL-E----GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPP 178 (424)
Q Consensus 104 ~~~~~~~~~~~~~-~----~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~ 178 (424)
+++|+|++..+++ . +...+|.+.........+..+. .+..+.|+|+++.+++++..++.+++|+++......
T Consensus 89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~ 165 (297)
T 2ojh_A 89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL---PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE 165 (297)
T ss_dssp CCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS---SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred ceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC---CccceEECCCCCEEEEEECCCCceEEEEEECCCCcc
Confidence 9999999987776 2 4677776643333344443332 267789999999998658889999999975433455
Q ss_pred cccccccCCeEEEEEccCCCEEEEEe-cCCcEEEEEECC-CcceeeEEecc---eeeeeecCCCCeEEEEeecC------
Q psy3710 179 LDIAAHEAPLSCIALNQTGTRLATAS-YKGTLIRVFDTG-SGQKLNELRRG---LCVLCPNSNNSLLAFPGRKS------ 247 (424)
Q Consensus 179 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~~i~iwd~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d------ 247 (424)
..+..|...+.+++|+|+++.|+.++ .++. +++|++. .+.....+..+ ...++++|++..+++++..+
T Consensus 166 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 244 (297)
T 2ojh_A 166 TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQ-MQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHP 244 (297)
T ss_dssp EECCCSSSCEEEEEECTTSSEEEEEECTTSS-CEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred eEcccCCCccccceECCCCCEEEEEecCCCC-ccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence 66777888999999999999888766 4888 9999876 44445555433 56688999999988866543
Q ss_pred ----CeEEEEeCCCCCCC-CeeeccCCCCeEEEEEcCCCCEEEEEeCCCc
Q psy3710 248 ----GHVHLVDLADPERP-PLDIAAHEAPLSCIALNQTGTRLATASYKGT 292 (424)
Q Consensus 248 ----g~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 292 (424)
+.|++||+.+++.. ...+.+|...+.+++|+|++++|++++.+..
T Consensus 245 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 294 (297)
T 2ojh_A 245 RDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFPV 294 (297)
T ss_dssp SSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECCC
T ss_pred ccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEeccC
Confidence 67999999886532 2234478889999999999999998887653
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-23 Score=180.54 Aligned_cols=264 Identities=9% Similarity=0.028 Sum_probs=194.5
Q ss_pred CeeEeecCCe-EEEEeCCcCcccccccccCC--CeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeec
Q psy3710 23 GCFACGMEDG-FRIYNCDPLKEKERQDFTDG--GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFN 99 (424)
Q Consensus 23 ~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 99 (424)
++|++++.++ |.+||..+++.......... .+..++|+|+++.++++... ++.|.+||+.+++.+..+...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~~~~~~~~~ 75 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK------SESLVKIDLVTGETLGRIDLS 75 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT------TTEEEEEETTTCCEEEEEECC
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCC------CCeEEEEECCCCCeEeeEEcC
Confidence 4677777666 99999998877554443221 47789999999888777643 689999999999998887743
Q ss_pred C------CeEEEEecCCceEEEe-e--------------ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEE
Q psy3710 100 A------PVKGVRLRRDKIVVVL-E--------------GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAF 158 (424)
Q Consensus 100 ~------~v~~~~~~~~~~~~~~-~--------------~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (424)
. .+..++|+|++..++. + +.|.+||+. +++....+.... .+..++++|+++++++
T Consensus 76 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~---~~~~~~~s~dg~~l~~ 151 (337)
T 1pby_B 76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE-TLSRRKAFEAPR---QITMLAWARDGSKLYG 151 (337)
T ss_dssp BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT-TTEEEEEEECCS---SCCCEEECTTSSCEEE
T ss_pred CcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECC-CCcEEEEEeCCC---CcceeEECCCCCEEEE
Confidence 3 6788999999954443 2 899999996 666666665432 2455689999999987
Q ss_pred eeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCC------------------------cEEEEEE
Q psy3710 159 PGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKG------------------------TLIRVFD 214 (424)
Q Consensus 159 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------------------------~~i~iwd 214 (424)
+ ++.|.+||+.++ +....+..+.. ...+.|+|+++.++..+..+ . |.+||
T Consensus 152 -~--~~~i~~~d~~~~-~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~d 225 (337)
T 1pby_B 152 -L--GRDLHVMDPEAG-TLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG-LLTMD 225 (337)
T ss_dssp -E--SSSEEEEETTTT-EEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE-EEEEE
T ss_pred -e--CCeEEEEECCCC-cEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccc-eEEEe
Confidence 5 689999999876 44333333320 11237899988776554332 3 68999
Q ss_pred CCCcceeeEEe-----cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeC
Q psy3710 215 TGSGQKLNELR-----RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY 289 (424)
Q Consensus 215 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 289 (424)
+.+++.. .+. .....++++|++..++++ ++.|++||+.+++. ...+. ....+.+++|+|+|++|++++.
T Consensus 226 ~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~v~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~ 299 (337)
T 1pby_B 226 LETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNAS-IKRVP-LPHSYYSVNVSTDGSTVWLGGA 299 (337)
T ss_dssp TTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE---ESEEEEEETTTTEE-EEEEE-CSSCCCEEEECTTSCEEEEESB
T ss_pred CCCCCce-EeecCCCCCceeeEEECCCCCEEEEe---CCeEEEEECCCCcC-cceec-CCCceeeEEECCCCCEEEEEcC
Confidence 9988765 322 124568999999988875 69999999987653 23332 3356789999999999999999
Q ss_pred CCcEEEEEECCCCceeeeec
Q psy3710 290 KGTLIRVFDTGSGQKLNELR 309 (424)
Q Consensus 290 d~~~i~iwd~~~~~~~~~~~ 309 (424)
++. |++||+.+++.+..+.
T Consensus 300 ~~~-i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 300 LGD-LAAYDAETLEKKGQVD 318 (337)
T ss_dssp SSE-EEEEETTTCCEEEEEE
T ss_pred CCc-EEEEECcCCcEEEEEE
Confidence 999 9999999998877764
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.9e-23 Score=175.90 Aligned_cols=238 Identities=11% Similarity=0.103 Sum_probs=177.1
Q ss_pred CCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe--eccEEEEeecCC-CceeEEEeeCCCCCeeEEEeecCCCC
Q psy3710 78 PNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQC-PQQLHVFETNPNPKGLCVLCPNSNNS 154 (424)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (424)
.|++|++||+.+++......+...+.+++|+|++.++++ ++.|.+||+. . ++.......+ ....+.++.|+|+++
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~-~~~~~~~~~~~~-~~~~~~~~~~spdg~ 97 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLA-GDPSPEKVDTGF-ATICNNDHGISPDGA 97 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESS-SCCSCEECCCTT-CCCBCSCCEECTTSS
T ss_pred cceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCC-CCCCceEecccc-ccccccceEECCCCC
Confidence 589999999999988877779999999999999987776 8899999996 4 5544433333 223466789999999
Q ss_pred eEEEeec--cCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEE-EEecCCcEEEEEEC--CCcceeeEEe---c
Q psy3710 155 LLAFPGR--KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLA-TASYKGTLIRVFDT--GSGQKLNELR---R 226 (424)
Q Consensus 155 ~l~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~~i~iwd~--~~~~~~~~~~---~ 226 (424)
++++ ++ .++...+|.++........+..+ ..+..++|+|+++.|+ +++.++. +++|++ .+++. ..+. .
T Consensus 98 ~l~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~-~~l~~~~~~~~~~-~~~~~~~~ 173 (297)
T 2ojh_A 98 LYAI-SDKVEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQV-FDIYSMDIDSGVE-TRLTHGEG 173 (297)
T ss_dssp EEEE-EECTTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTE-EEEEEEETTTCCE-EECCCSSS
T ss_pred EEEE-EEeCCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCc-eEEEEEECCCCcc-eEcccCCC
Confidence 9998 65 33445555443221334444444 3489999999999887 7778898 899985 34433 2332 3
Q ss_pred ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCC-----------CcEEE
Q psy3710 227 GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK-----------GTLIR 295 (424)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~~i~ 295 (424)
.+..++++|++..+++++..++.+++|++.........+..|...+..++|+|+|++|++++.+ +. |.
T Consensus 174 ~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~-l~ 252 (297)
T 2ojh_A 174 RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR-VQ 252 (297)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE-EE
T ss_pred ccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE-EE
Confidence 3677899999999998777799999999874444556666788889999999999999988876 45 99
Q ss_pred EEECCCCceee--------------eeccCCcEEEEEeCCC
Q psy3710 296 VFDTGSGQKLN--------------ELRRDSSYLCVSSDHG 322 (424)
Q Consensus 296 iwd~~~~~~~~--------------~~~~~~~~l~~~~~d~ 322 (424)
+||+.+++... .|+|++++|++++.+.
T Consensus 253 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 253 LMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99998875422 2567888888777653
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9.4e-23 Score=192.92 Aligned_cols=268 Identities=12% Similarity=-0.004 Sum_probs=189.8
Q ss_pred cCCceEEEEECCCCCeeEeecC-Ce-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEE-
Q psy3710 9 YKNGLLYAGFNQDQGCFACGME-DG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIW- 85 (424)
Q Consensus 9 h~~~V~~~~~s~~g~~la~g~~-~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iw- 85 (424)
+..+|++++|+|||++||+++. ++ ++||+++.++.......+...+..+.|+|+ +.+++..... .+....+|
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~----g~~~~~l~~ 94 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSK----GAEQHALFK 94 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECST----TSCCEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCC----CCcceEEEE
Confidence 3568999999999999997765 66 999998666554433333467888999988 5555555211 13445554
Q ss_pred -EC-CCCcEEEEEeecCCeEEEEecCCc--eEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEe
Q psy3710 86 -DD-LKKQVVICLEFNAPVKGVRLRRDK--IVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFP 159 (424)
Q Consensus 86 -d~-~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (424)
+. +.+... .+.....+...+|+|++ .++++ ++.+.+||+. +++.......+. ..+.++|||++|++
T Consensus 95 ~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~-~g~~~~l~~~~~-----~~~~~spDG~~la~- 166 (582)
T 3o4h_A 95 VNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALD-GGGLRELARLPG-----FGFVSDIRGDLIAG- 166 (582)
T ss_dssp EETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEE-TTEEEEEEEESS-----CEEEEEEETTEEEE-
T ss_pred EeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEcc-CCcEEEeecCCC-----ceEEECCCCCEEEE-
Confidence 54 123222 33333344456777766 45554 5566799996 555444433322 56789999999997
Q ss_pred eccC----CeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCC--cEEEEEECCCcceeeEEecc---eee
Q psy3710 160 GRKS----GHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKG--TLIRVFDTGSGQKLNELRRG---LCV 230 (424)
Q Consensus 160 ~~~d----g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~~i~iwd~~~~~~~~~~~~~---~~~ 230 (424)
++.+ +.|++||+.++ ....+..|...+..++|+|||+.|+++..++ . |++||+.+++.. .+..+ +..
T Consensus 167 ~~~~~~~~~~i~~~d~~~g--~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~-i~~~d~~~~~~~-~~~~~~~~~~~ 242 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSG--GLRVFDSGEGSFSSASISPGMKVTAGLETAREAR-LVTVDPRDGSVE-DLELPSKDFSS 242 (582)
T ss_dssp EEEEETTEEEEEEEETTTC--CCEEECCSSCEEEEEEECTTSCEEEEEECSSCEE-EEEECTTTCCEE-ECCCSCSHHHH
T ss_pred EEEcCCCCeEEEEEcCCCC--CceEeecCCCccccceECCCCCEEEEccCCCeeE-EEEEcCCCCcEE-EccCCCcChhh
Confidence 5555 78999999875 3456778888999999999999999888888 7 999999988876 44433 333
Q ss_pred ee--------ecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcE--EEEEECC
Q psy3710 231 LC--------PNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTL--IRVFDTG 300 (424)
Q Consensus 231 ~~--------~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~--i~iwd~~ 300 (424)
++ ++|++ .++++++.++.+++|++ ++. .. .+.+.+.+++|+ +++++++++.+... +.+||..
T Consensus 243 ~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~-~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 243 YRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GER-VE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp HCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEE-EC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred hhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCe-ec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 45 99999 88888999999999999 331 11 344678999999 99999998887543 5666655
Q ss_pred C
Q psy3710 301 S 301 (424)
Q Consensus 301 ~ 301 (424)
+
T Consensus 315 ~ 315 (582)
T 3o4h_A 315 E 315 (582)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=202.89 Aligned_cols=314 Identities=11% Similarity=0.051 Sum_probs=211.5
Q ss_pred EEEECCCCCeeEeecCCeEEEEeCCcCcccccccccCC---CeeeEEEeccCceEEEEeCCcC--CCcCCCeEEEEECCC
Q psy3710 15 YAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDG---GLGHVEMLFRCNYLALVGGGTH--PKYPNNRVMIWDDLK 89 (424)
Q Consensus 15 ~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~~~~--~~~~d~~i~iwd~~~ 89 (424)
.++|+|||++++++.++.|++||+.+++.......+.. .+..++|+|+++++++++.... ....+++|++||+.+
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 67999999777766544499999998887544443322 4889999999999998874100 000158999999998
Q ss_pred CcEEEEEeecCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEE-eeCCCC---------------CeeEEEeecC
Q psy3710 90 KQVVICLEFNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVF-ETNPNP---------------KGLCVLCPNS 151 (424)
Q Consensus 90 ~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~-~~~~~~---------------~~~~~~~~~~ 151 (424)
++.+........+..++|+|||..++. ++.|++|++. +++..... .++... .....++|+|
T Consensus 100 g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~-~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP 178 (719)
T 1z68_A 100 GEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRP-GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP 178 (719)
T ss_dssp TEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESST-TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT
T ss_pred CccccceecCcccccceECCCCCEEEEEECCeEEEEeCC-CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC
Confidence 876322223467899999999977765 8899999986 44433221 111110 0013689999
Q ss_pred CCCeEEEeeccCC----------------------------------eEEEEeCCCCCC----CC---cccccccCCeEE
Q psy3710 152 NNSLLAFPGRKSG----------------------------------HVHLVDLADPER----PP---LDIAAHEAPLSC 190 (424)
Q Consensus 152 ~~~~l~~~~~~dg----------------------------------~i~i~d~~~~~~----~~---~~~~~~~~~v~~ 190 (424)
||+.|++ ++.|. .|++||+.++.. .+ ..+.+|...+..
T Consensus 179 DG~~la~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (719)
T 1z68_A 179 NGKFLAY-AEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSW 257 (719)
T ss_dssp TSSEEEE-EEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEE
T ss_pred CCCEEEE-EEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEE
Confidence 9999998 55442 788999987521 01 234568888999
Q ss_pred EEEccCCCEEEEEecC----CcEEEEEE----CCCcceeeEEe----cc---ee-----eeeecCCCCeEEEE-eecCC-
Q psy3710 191 IALNQTGTRLATASYK----GTLIRVFD----TGSGQKLNELR----RG---LC-----VLCPNSNNSLLAFP-GRKSG- 248 (424)
Q Consensus 191 ~~~~~~~~~l~~~~~d----~~~i~iwd----~~~~~~~~~~~----~~---~~-----~~~~~~~~~~~~~~-~~~dg- 248 (424)
++|+||++.+++.... .. |.+|| ..+++....+. .+ +. ...|+|+++.+++. +..+|
T Consensus 258 ~~~SpD~~~~~~~~~~~~~~~~-l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~ 336 (719)
T 1z68_A 258 LTWVTDERVCLQWLKRVQNVSV-LSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGY 336 (719)
T ss_dssp EEESSSSEEEEEEEESSTTEEE-EEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSC
T ss_pred eEEeCCCeEEEEEeccccCeEE-EEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCc
Confidence 9999998777664422 24 88899 87776554441 21 33 67899999987763 44555
Q ss_pred -eEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEECCC--C----cee-----------
Q psy3710 249 -HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK-----GTLIRVFDTGS--G----QKL----------- 305 (424)
Q Consensus 249 -~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~~i~iwd~~~--~----~~~----------- 305 (424)
.|++||+.+++ ...+..+...+..+.++ +++.|+..+.+ +. .++|.+.. + +++
T Consensus 337 ~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~-~~l~~~~~~~g~~~~~~l~~~~~~~~~~~ 412 (719)
T 1z68_A 337 KHIHYIKDTVEN--AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGR-RNIYRISIGSYPPSKKCVTCHLRKERCQY 412 (719)
T ss_dssp EEEEEESSCSTT--CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTC-BEEEEEECSSSSCCEEESSTTTTTTTBCB
T ss_pred eEEEEEECCCCc--eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCce-EEEEEEeCCCCCCCceeccCccCCCCCce
Confidence 57777876654 34555666678888877 88877777665 66 88887643 3 111
Q ss_pred --eeeccCCcEEEEE-eCC--CcEEEEEccccccc
Q psy3710 306 --NELRRDSSYLCVS-SDH--GTVHVFSVDEAQKI 335 (424)
Q Consensus 306 --~~~~~~~~~l~~~-~~d--~~i~iw~~~~~~~~ 335 (424)
..|+|++++++.. +.. ..+.+||+.+++..
T Consensus 413 ~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~ 447 (719)
T 1z68_A 413 YTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEI 447 (719)
T ss_dssp EEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEE
T ss_pred EEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEE
Confidence 2367888877643 333 46889999887643
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-21 Score=170.91 Aligned_cols=262 Identities=14% Similarity=0.133 Sum_probs=172.8
Q ss_pred eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeecc--CCeEEEEeCCCCCC-CCcccccccCCeEEEEE
Q psy3710 117 EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRK--SGHVHLVDLADPER-PPLDIAAHEAPLSCIAL 193 (424)
Q Consensus 117 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~ 193 (424)
++.|.+|+++.....+..+...........++++|+++ |++++.. ++.|.+|++.++.. .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 45688888864322222211111112244578899999 5552432 68999999976421 22333457778899999
Q ss_pred ccCCCEEEEEe-cCCcEEEEEECCC-c--ceeeEEec------------ceeeeeecCCCCeEEEEeecCCeEEEEeCCC
Q psy3710 194 NQTGTRLATAS-YKGTLIRVFDTGS-G--QKLNELRR------------GLCVLCPNSNNSLLAFPGRKSGHVHLVDLAD 257 (424)
Q Consensus 194 ~~~~~~l~~~~-~d~~~i~iwd~~~-~--~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 257 (424)
+|+|++|++++ .++. |.+|++.. + +.+..+.. ....++++|++. ++++...++.|++|++..
T Consensus 94 spdg~~l~~~~~~~~~-v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 94 DEARQLVYSANYHKGT-AEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp ETTTTEEEEEETTTTE-EEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECT
T ss_pred CCCCCEEEEEeCCCCE-EEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECC
Confidence 99999988888 6788 99999963 2 33333322 145689999999 777777899999999983
Q ss_pred CCCCC--eeec-cCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEECCC--Ccee--------------------eeeccC
Q psy3710 258 PERPP--LDIA-AHEAPLSCIALNQTGTRLATA-SYKGTLIRVFDTGS--GQKL--------------------NELRRD 311 (424)
Q Consensus 258 ~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~-~~d~~~i~iwd~~~--~~~~--------------------~~~~~~ 311 (424)
..... ..+. .....+..++|+|||++++++ ..++. |++|++.. ++.. ..|+|+
T Consensus 172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~-v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd 250 (347)
T 3hfq_A 172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQ-IASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHD 250 (347)
T ss_dssp TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTT
T ss_pred CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCE-EEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCC
Confidence 22211 1111 223467889999999977665 45667 99999874 4321 237899
Q ss_pred CcEE-EEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEecc-CcEE
Q psy3710 312 SSYL-CVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICAD-GSYY 389 (424)
Q Consensus 312 ~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g~v~ 389 (424)
|++| ++...++.|.+|++.....+.. +..+..+...+..++|+|||++|++++.+ +.|.
T Consensus 251 G~~l~v~~~~~~~v~v~~~~~~g~~~~-------------------~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~ 311 (347)
T 3hfq_A 251 GHFLYVSNRGYNTLAVFAVTADGHLTL-------------------IQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNAT 311 (347)
T ss_dssp SCEEEEEEETTTEEEEEEECGGGCEEE-------------------EEEEECSSSCCCEEEECTTSSEEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCEEEEEEECCCCcEEE-------------------eEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEE
Confidence 9977 5556689999999974221111 11122233446789999999999988765 8999
Q ss_pred EEEecC-Ccceee
Q psy3710 390 KFMFNS-KGECWR 401 (424)
Q Consensus 390 ~~~~~~-~~~~~~ 401 (424)
+|+++. ++++..
T Consensus 312 v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 312 LYARDLTSGKLSL 324 (347)
T ss_dssp EEEECTTTCCEEE
T ss_pred EEEEeCCCCeEEe
Confidence 998864 355543
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-21 Score=172.60 Aligned_cols=264 Identities=11% Similarity=0.062 Sum_probs=180.2
Q ss_pred EEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecC--CeEEEEecCCceEE-Ee---eccEEEEeecCCCc
Q psy3710 57 VEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNA--PVKGVRLRRDKIVV-VL---EGLIKVYTFIQCPQ 130 (424)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~-~~---~~~i~v~~~~~~~~ 130 (424)
+++.+++..+++.+ .+++|.+||..+++.+..+.... .+..++|+|++..+ ++ ++.|.+||+. +++
T Consensus 5 ~~~~~~~~~~v~~~-------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~-t~~ 76 (349)
T 1jmx_B 5 PALKAGHEYMIVTN-------YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD-TCK 76 (349)
T ss_dssp CCCCTTCEEEEEEE-------TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT-TTE
T ss_pred ccccCCCEEEEEeC-------CCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC-CCc
Confidence 45566667777766 47999999999999988888655 78899999998643 33 6789999986 666
Q ss_pred eeEEEeeCCC----CCeeEEEeecCCCCeEEEeeccC------------CeEEEEeCCCCC--CCCcccccccCCeEEEE
Q psy3710 131 QLHVFETNPN----PKGLCVLCPNSNNSLLAFPGRKS------------GHVHLVDLADPE--RPPLDIAAHEAPLSCIA 192 (424)
Q Consensus 131 ~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~d------------g~i~i~d~~~~~--~~~~~~~~~~~~v~~~~ 192 (424)
....+..... ...+..++++|+++++++ ++.+ +.|.+||+.++. +.+..+ .+...+.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~-~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~ 154 (349)
T 1jmx_B 77 NTFHANLSSVPGEVGRSMYSFAISPDGKEVYA-TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMR 154 (349)
T ss_dssp EEEEEESCCSTTEEEECSSCEEECTTSSEEEE-EEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEE
T ss_pred EEEEEEcccccccccccccceEECCCCCEEEE-EcccccccccccccCCCeEEEEECCCccccceeeec-cCCCccccee
Confidence 6666654321 112446789999999998 5544 899999998741 122222 2344688999
Q ss_pred EccCCCEEEEEecCCcEEEEEECCCcceeeEEecce---------------------------eeeeecCCCCeEEEEee
Q psy3710 193 LNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGL---------------------------CVLCPNSNNSLLAFPGR 245 (424)
Q Consensus 193 ~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~ 245 (424)
|+|+|+ ++++ ++. |.+||..+++.+..++.+. ..+++.+++........
T Consensus 155 ~s~dg~-l~~~--~~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 230 (349)
T 1jmx_B 155 AADDGS-LYVA--GPD-IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD 230 (349)
T ss_dssp ECTTSC-EEEE--SSS-EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE
T ss_pred ECCCCc-EEEc--cCc-EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc
Confidence 999999 5554 456 9999999998877765331 11222222110000000
Q ss_pred cCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEECCCCceeee-----------eccCCc
Q psy3710 246 KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ-TGTRLATASYKGTLIRVFDTGSGQKLNE-----------LRRDSS 313 (424)
Q Consensus 246 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~~i~iwd~~~~~~~~~-----------~~~~~~ 313 (424)
....+..+|..+++.....+..+...+..++|+| ++++++++ ++. |.+||+.+++.+.. ++|+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~-v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~ 307 (349)
T 1jmx_B 231 LLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR-LAKYDLKQRKLIKAANLDHTYYCVAFDKKGD 307 (349)
T ss_dssp EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE-EEEEETTTTEEEEEEECSSCCCEEEECSSSS
T ss_pred cceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe-EEEEECccCeEEEEEcCCCCccceEECCCCC
Confidence 1111222444444322223334666789999999 99999988 777 99999999887654 568899
Q ss_pred EEEEEeCCCcEEEEEccccccccc
Q psy3710 314 YLCVSSDHGTVHVFSVDEAQKINK 337 (424)
Q Consensus 314 ~l~~~~~d~~i~iw~~~~~~~~~~ 337 (424)
+|++++.++.|++||+.+++.+..
T Consensus 308 ~l~~~~~~~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 308 KLYLGGTFNDLAVFNPDTLEKVKN 331 (349)
T ss_dssp CEEEESBSSEEEEEETTTTEEEEE
T ss_pred EEEEecCCCeEEEEeccccceeee
Confidence 888888899999999998776544
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.2e-21 Score=167.71 Aligned_cols=266 Identities=11% Similarity=0.075 Sum_probs=177.9
Q ss_pred CeEEEEeCCc--Ccccc-cccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcE--EEEEe-ecCCeEE
Q psy3710 31 DGFRIYNCDP--LKEKE-RQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQV--VICLE-FNAPVKG 104 (424)
Q Consensus 31 ~~i~iw~~~~--~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~-~~~~v~~ 104 (424)
++|.+|+++. ++... ....+......++|+|+++ +++++... .++.|.+|++.+++. +..+. +...+..
T Consensus 16 ~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~----~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~ 90 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKED----DEGGIAAWQIDGQTAHKLNTVVAPGTPPAY 90 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEET----TEEEEEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred CCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecC----CCceEEEEEecCCcEEEeeeeecCCCCCEE
Confidence 3477777654 43322 1222456677899999999 66655310 258999999977663 33323 5778899
Q ss_pred EEecCCceEEEe----eccEEEEeecCCCce--eEEEeeCC-------CCCeeEEEeecCCCCeEEEeeccCCeEEEEeC
Q psy3710 105 VRLRRDKIVVVL----EGLIKVYTFIQCPQQ--LHVFETNP-------NPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDL 171 (424)
Q Consensus 105 ~~~~~~~~~~~~----~~~i~v~~~~~~~~~--~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~ 171 (424)
++|+|++..+++ ++.+.+|++...+.. +..+.... ....+..++++|+++ +++++..++.|.+|++
T Consensus 91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~ 169 (347)
T 3hfq_A 91 VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNV 169 (347)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEE
Confidence 999999975554 578999999633332 22222211 112366789999999 5554778899999999
Q ss_pred CCCCCCCc--cccc-ccCCeEEEEEccCCCEEEEE-ecCCcEEEEEECCC--cce--eeEEec---------ceeeeeec
Q psy3710 172 ADPERPPL--DIAA-HEAPLSCIALNQTGTRLATA-SYKGTLIRVFDTGS--GQK--LNELRR---------GLCVLCPN 234 (424)
Q Consensus 172 ~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~-~~d~~~i~iwd~~~--~~~--~~~~~~---------~~~~~~~~ 234 (424)
........ .+.. ....+..++|+|+|++++++ ..++. |.+|++.. ++. +..+.. ....++++
T Consensus 170 ~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~-v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s 248 (347)
T 3hfq_A 170 SDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQ-IASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLS 248 (347)
T ss_dssp CTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEEC
T ss_pred CCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCE-EEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEEC
Confidence 83212211 1122 22357889999999976665 55677 99999874 432 222221 25568999
Q ss_pred CCCCeEEEEeecCCeEEEEeCCCCC--CCCeeeccCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEE--ECCCCce
Q psy3710 235 SNNSLLAFPGRKSGHVHLVDLADPE--RPPLDIAAHEAPLSCIALNQTGTRLATASYK-GTLIRVF--DTGSGQK 304 (424)
Q Consensus 235 ~~~~~~~~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~~i~iw--d~~~~~~ 304 (424)
|+++.++++...++.|.+|++.... .....+..+...+..++|+|||++|++++.+ +. |.+| |..+++.
T Consensus 249 pdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~~~d~~tg~l 322 (347)
T 3hfq_A 249 HDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDN-ATLYARDLTSGKL 322 (347)
T ss_dssp TTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTE-EEEEEECTTTCCE
T ss_pred CCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCc-EEEEEEeCCCCeE
Confidence 9999998888889999999997432 1233444556678999999999999888765 66 9999 4455544
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-21 Score=172.54 Aligned_cols=274 Identities=10% Similarity=0.063 Sum_probs=182.5
Q ss_pred EEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccC-CCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcE
Q psy3710 15 YAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTD-GGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQV 92 (424)
Q Consensus 15 ~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~ 92 (424)
.++++++++++++++.++ |++||..+++.......+. .....++++|+++.++++... ++.|.+||+.+++.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~------~~~i~~~d~~t~~~ 77 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDLDTCKN 77 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT------TTEEEEEETTTTEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCC------CCcEEEEeCCCCcE
Confidence 457888999899887777 9999999887755444432 256789999999887766643 68999999999998
Q ss_pred EEEEeecC-------CeEEEEecCCceEEEe---e------------ccEEEEeecCCCc---eeEEEeeCCCCCeeEEE
Q psy3710 93 VICLEFNA-------PVKGVRLRRDKIVVVL---E------------GLIKVYTFIQCPQ---QLHVFETNPNPKGLCVL 147 (424)
Q Consensus 93 ~~~~~~~~-------~v~~~~~~~~~~~~~~---~------------~~i~v~~~~~~~~---~~~~~~~~~~~~~~~~~ 147 (424)
+..+.... .+..++|+|++..++. + +.|.+||+. +++ .+..+..+ ..+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~---~~~~~~ 153 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA-DGLEAKPVRTFPMP---RQVYLM 153 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG-GGGGBCCSEEEECC---SSCCCE
T ss_pred EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECC-CccccceeeeccCC---Ccccce
Confidence 88777422 3788999999976654 4 899999986 432 22333332 245677
Q ss_pred eecCCCCeEEEeeccCCeEEEEeCCCCCCCCccccccc---------------------C---CeEEEEEccCCCEEEEE
Q psy3710 148 CPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHE---------------------A---PLSCIALNQTGTRLATA 203 (424)
Q Consensus 148 ~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------------~---~v~~~~~~~~~~~l~~~ 203 (424)
+++|+++ +++ ++. .|.+||+.++ +....+..+. . ....+++++++......
T Consensus 154 ~~s~dg~-l~~-~~~--~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 228 (349)
T 1jmx_B 154 RAADDGS-LYV-AGP--DIYKMDVKTG-KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 228 (349)
T ss_dssp EECTTSC-EEE-ESS--SEEEECTTTC-CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred eECCCCc-EEE-ccC--cEEEEeCCCC-ceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc
Confidence 8999999 555 433 4999999876 3333332221 0 23456666554221111
Q ss_pred ecCCcEEEEEECCCcceeeE----EecceeeeeecC-CCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEc
Q psy3710 204 SYKGTLIRVFDTGSGQKLNE----LRRGLCVLCPNS-NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALN 278 (424)
Q Consensus 204 ~~d~~~i~iwd~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 278 (424)
......+..+|..+++.... .......++++| ++..++++ ++.|++||+.+++. ...+. ....+.+++|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~-~~~~~-~~~~~~~~~~s 303 (349)
T 1jmx_B 229 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKL-IKAAN-LDHTYYCVAFD 303 (349)
T ss_dssp CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEE-EEEEE-CSSCCCEEEEC
T ss_pred cccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeE-EEEEc-CCCCccceEEC
Confidence 11111022355554432111 112356788899 88887764 88999999988653 22332 33457899999
Q ss_pred CCCCEEEEEeCCCcEEEEEECCCCceeeeec
Q psy3710 279 QTGTRLATASYKGTLIRVFDTGSGQKLNELR 309 (424)
Q Consensus 279 ~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 309 (424)
|+|++|++++.++. |++||+++++.+..+.
T Consensus 304 ~dg~~l~~~~~~~~-v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 304 KKGDKLYLGGTFND-LAVFNPDTLEKVKNIK 333 (349)
T ss_dssp SSSSCEEEESBSSE-EEEEETTTTEEEEEEE
T ss_pred CCCCEEEEecCCCe-EEEEeccccceeeeee
Confidence 99999999888888 9999999998887765
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-21 Score=173.47 Aligned_cols=277 Identities=11% Similarity=0.009 Sum_probs=189.2
Q ss_pred cccccCCceEE-----EEECCCCCeeEeecC-Ce---EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCC
Q psy3710 5 TSSTYKNGLLY-----AGFNQDQGCFACGME-DG---FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHP 75 (424)
Q Consensus 5 ~l~~h~~~V~~-----~~~s~~g~~la~g~~-~~---i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 75 (424)
.+..|...... .+|||||++|+.++. ++ |.+||+++++.......+...+....|+|+++.|++++
T Consensus 25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~----- 99 (388)
T 3pe7_A 25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVK----- 99 (388)
T ss_dssp ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEE-----
T ss_pred EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEe-----
Confidence 46667666666 889999999997765 55 88889988877555555555555678999999999998
Q ss_pred CcCCCeEEEEECCCCcEEEEEeec-CCeEEE--EecCCceEEEe-------------------------eccEEEEeecC
Q psy3710 76 KYPNNRVMIWDDLKKQVVICLEFN-APVKGV--RLRRDKIVVVL-------------------------EGLIKVYTFIQ 127 (424)
Q Consensus 76 ~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~--~~~~~~~~~~~-------------------------~~~i~v~~~~~ 127 (424)
.++.|++||+.+++....+... ..+... .+++++..++. +..|.+||+.
T Consensus 100 --~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~- 176 (388)
T 3pe7_A 100 --DGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK- 176 (388)
T ss_dssp --TTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT-
T ss_pred --CCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC-
Confidence 4689999999999887766643 334333 34888877752 2578889986
Q ss_pred CCceeEEEeeCCCCCeeEEEeecC-CCCeEEEeecc-----CCeEEEEeCCCCCCCCccccccc--CCeEEEEEccCCCE
Q psy3710 128 CPQQLHVFETNPNPKGLCVLCPNS-NNSLLAFPGRK-----SGHVHLVDLADPERPPLDIAAHE--APLSCIALNQTGTR 199 (424)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~ 199 (424)
+++.. .+..+. ..+..+.|+| +++.|+++... ...|.++|.... ....+..+. ..+..++|+|||+.
T Consensus 177 ~g~~~-~l~~~~--~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~spdg~~ 251 (388)
T 3pe7_A 177 TGEST-VILQEN--QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT--NMRKVKTHAEGESCTHEFWVPDGSA 251 (388)
T ss_dssp TCCEE-EEEEES--SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC--CCEESCCCCTTEEEEEEEECTTSSC
T ss_pred CCceE-EeecCC--ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC--ceEEeeeCCCCcccccceECCCCCE
Confidence 45433 333333 3367889999 99999873322 337888887753 334444444 35788999999998
Q ss_pred EEEEecC-----CcEEEEEECCCcceee--EEecc------eeeeeecCCCCeEEEEe--------ecCCeEEEEeCCCC
Q psy3710 200 LATASYK-----GTLIRVFDTGSGQKLN--ELRRG------LCVLCPNSNNSLLAFPG--------RKSGHVHLVDLADP 258 (424)
Q Consensus 200 l~~~~~d-----~~~i~iwd~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~--------~~dg~i~i~d~~~~ 258 (424)
|+..+.+ .. |++||+.+++... .++.. ....+++|++..++++. ..+..|++||+.++
T Consensus 252 l~~~~~~~~~~~~~-l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 252 LVYVSYLKGSPDRF-IYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp EEEEEEETTCCCEE-EEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred EEEEecCCCCCcce-EEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 8665442 24 9999999887432 33321 12246899999888754 45679999999876
Q ss_pred CCCCeeeccCCC-----------CeEEEEEcCCCCEEEEEeC-CCcEEEEEE
Q psy3710 259 ERPPLDIAAHEA-----------PLSCIALNQTGTRLATASY-KGTLIRVFD 298 (424)
Q Consensus 259 ~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~-d~~~i~iwd 298 (424)
+. ..+..+.. .+.+++|+|||+.|+..+. ++. ..||.
T Consensus 331 ~~--~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~-~~l~~ 379 (388)
T 3pe7_A 331 TQ--HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGK-PALYL 379 (388)
T ss_dssp EE--EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSS-CEEEE
T ss_pred ce--EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCc-eeEEE
Confidence 52 33444554 5788899999998887664 554 55553
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-20 Score=182.93 Aligned_cols=355 Identities=12% Similarity=0.044 Sum_probs=219.1
Q ss_pred CCceEEEEECCCCCeeEeecCCeEEEEeCCcCcccccccccCC---Ce--eeEEEeccCceEEEEeCCcCC--CcCCCeE
Q psy3710 10 KNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDG---GL--GHVEMLFRCNYLALVGGGTHP--KYPNNRV 82 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~---~i--~~~~~~~~~~~l~~~~~~~~~--~~~d~~i 82 (424)
.....+++|+|||++++++ ++.|++||+.+++.......+.. .+ ..+.|+||++++++.+..... ....+.+
T Consensus 16 ~~~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred cccccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 3446689999999999987 44599999999887544443332 12 337899999999988842100 0012677
Q ss_pred EEEECCCCcEEEEEeecCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCC-----------------e
Q psy3710 83 MIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPK-----------------G 143 (424)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~-----------------~ 143 (424)
.+||+.+++......+...+..++|||||..++. ++.|++|++. +++..+ +....... .
T Consensus 95 ~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~-~~~~~~-lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 95 DIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEP-NLPSYR-ITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESST-TSCCEE-CCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred EEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECC-CCceEE-EcCCCCccceecCcccccccchhcCC
Confidence 8999999886553346788999999999977775 8899999986 444322 21111111 1
Q ss_pred eEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCC---cc-
Q psy3710 144 LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS---GQ- 219 (424)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~---~~- 219 (424)
...+.|||||+.|++....++.+.+|++....... .+...+..+.+.+.|... .... |++||+.+ ++
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~----~~~~~~~~~~yp~~G~~~----~~~~-l~v~d~~~~~~~~~ 243 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES----LQYPKTVRVPYPKAGAVN----PTVK-FFVVNTDSLSSVTN 243 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT----CSSCEEEEEECCBTTSCC----CEEE-EEEEETTSCCSSSC
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCC----CCCCcceeecCCCCcCcC----CeeE-EEEEECCCCCCCCc
Confidence 12478999999999844455558888875421111 345567788887777532 1225 99999998 73
Q ss_pred -eeeEEec------c---eeeeeecCCCCeEEEEeec---CCeEEEEeCCCCC----CC-Ceee--ccCCCCeE-----E
Q psy3710 220 -KLNELRR------G---LCVLCPNSNNSLLAFPGRK---SGHVHLVDLADPE----RP-PLDI--AAHEAPLS-----C 274 (424)
Q Consensus 220 -~~~~~~~------~---~~~~~~~~~~~~~~~~~~~---dg~i~i~d~~~~~----~~-~~~~--~~~~~~v~-----~ 274 (424)
....+.. + +..++|+|+++.+++.... +..|++||+.+++ +. ...+ ..|...+. .
T Consensus 244 ~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~ 323 (740)
T 4a5s_A 244 ATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSE 323 (740)
T ss_dssp CCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCC
T ss_pred ceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCC
Confidence 2233332 1 5667899999866654332 3479999998876 11 1222 35665554 7
Q ss_pred EEEcCCCCEEE-EEeC-CCc-EEEEEECCCCceeee----------eccCCcEEEEEeCC-----C--cEEEEEcccccc
Q psy3710 275 IALNQTGTRLA-TASY-KGT-LIRVFDTGSGQKLNE----------LRRDSSYLCVSSDH-----G--TVHVFSVDEAQK 334 (424)
Q Consensus 275 ~~~~~~~~~l~-~~~~-d~~-~i~iwd~~~~~~~~~----------~~~~~~~l~~~~~d-----~--~i~iw~~~~~~~ 334 (424)
++|+|||+.|+ ..+. +|. .|.+||..+++.... +.++++.++..+.. + .|+..++..++.
T Consensus 324 p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~ 403 (740)
T 4a5s_A 324 PHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTK 403 (740)
T ss_dssp CEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEE
T ss_pred ceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCc
Confidence 89999999877 6654 332 188899887654331 22455555444332 2 344444443321
Q ss_pred ccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEecc---CcEEEEEec
Q psy3710 335 INKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICAD---GSYYKFMFN 394 (424)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~v~~~~~~ 394 (424)
...+.. .. ...........|||++++++..... ..+.+++..
T Consensus 404 ~~~lt~--------~~----------~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~ 448 (740)
T 4a5s_A 404 VTCLSC--------EL----------NPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV 448 (740)
T ss_dssp EEESST--------TT----------STTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred ceeecc--------cc----------CCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence 101100 00 0011235578999999987665443 256666654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-21 Score=187.78 Aligned_cols=305 Identities=12% Similarity=0.093 Sum_probs=197.9
Q ss_pred eeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecC----CeEEEEecCCceEEEe--e----------c
Q psy3710 55 GHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNA----PVKGVRLRRDKIVVVL--E----------G 118 (424)
Q Consensus 55 ~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~--~----------~ 118 (424)
..++|+|++.+++ .+ .|++|++||+.+++....+.+.. .+.+++|+||+..++. + +
T Consensus 19 ~~~~~s~dg~~~~-~~-------~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~ 90 (719)
T 1z68_A 19 FFPNWISGQEYLH-QS-------ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTA 90 (719)
T ss_dssp CCCEESSSSEEEE-EC-------TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred CccEECCCCeEEE-Ec-------CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecce
Confidence 3689999995443 33 37999999999999877776432 4899999999987764 3 7
Q ss_pred cEEEEeecCCCcee--EEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCc-ccccccCCe-------
Q psy3710 119 LIKVYTFIQCPQQL--HVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL-DIAAHEAPL------- 188 (424)
Q Consensus 119 ~i~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v------- 188 (424)
.|++||+. +++.+ ..+. ..+..++|+|||+.|++ + .++.|++|++.++. ... ...++...|
T Consensus 91 ~i~~~d~~-~g~~~~~~~l~-----~~~~~~~~SPDG~~la~-~-~~~~i~~~~~~~g~-~~~l~~~~~~~~v~~g~~~~ 161 (719)
T 1z68_A 91 TYYIYDLS-NGEFVRGNELP-----RPIQYLCWSPVGSKLAY-V-YQNNIYLKQRPGDP-PFQITFNGRENKIFNGIPDW 161 (719)
T ss_dssp EEEEEETT-TTEECCSSCCC-----SSBCCEEECSSTTCEEE-E-ETTEEEEESSTTSC-CEECCCCCBTTTEEESSCCH
T ss_pred EEEEEECC-CCccccceecC-----cccccceECCCCCEEEE-E-ECCeEEEEeCCCCC-cEEEecCCCcCCeEcccccc
Confidence 89999986 55442 1121 23567899999999998 5 47899999998763 222 122333222
Q ss_pred ----------EEEEEccCCCEEEEEecCC----------------------------------cEEEEEECCCccee--e
Q psy3710 189 ----------SCIALNQTGTRLATASYKG----------------------------------TLIRVFDTGSGQKL--N 222 (424)
Q Consensus 189 ----------~~~~~~~~~~~l~~~~~d~----------------------------------~~i~iwd~~~~~~~--~ 222 (424)
.+++|+|||++|++++.|. . |++||+.+++.. .
T Consensus 162 v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~-l~~~d~~~~~~~~~~ 240 (719)
T 1z68_A 162 VYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVR-IFIIDTTYPAYVGPQ 240 (719)
T ss_dssp HHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEE-EEEEESSCHHHHCCE
T ss_pred eeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeE-EEEEECCCCCcccee
Confidence 4899999999999988652 5 899999888653 1
Q ss_pred EEe------c---ceeeeeecCCCCeEEEEeecC----CeEEEEe----CCCCCCCCeee----ccCCCCeE-----EEE
Q psy3710 223 ELR------R---GLCVLCPNSNNSLLAFPGRKS----GHVHLVD----LADPERPPLDI----AAHEAPLS-----CIA 276 (424)
Q Consensus 223 ~~~------~---~~~~~~~~~~~~~~~~~~~~d----g~i~i~d----~~~~~~~~~~~----~~~~~~v~-----~~~ 276 (424)
.+. . .+..++|+|++ .++++.... ..|++|| +.+++.. ..+ ..|...+. .++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~ 318 (719)
T 1z68_A 241 EVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCP-KTQEHIEESRTGWAGGFFVSTPV 318 (719)
T ss_dssp ECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECC-GGGEEEEECSSSCSSSSSCCCCE
T ss_pred EccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceE-EEEecccccCCceEccccCCccE
Confidence 221 1 25678899995 455544332 3588899 7665532 233 36777776 889
Q ss_pred EcCCCCEEEE--EeCCCcE-EEEEECCCCceee-----------eeccCCcEEEEEeCC-----CcEEEEEccc--ccc-
Q psy3710 277 LNQTGTRLAT--ASYKGTL-IRVFDTGSGQKLN-----------ELRRDSSYLCVSSDH-----GTVHVFSVDE--AQK- 334 (424)
Q Consensus 277 ~~~~~~~l~~--~~~d~~~-i~iwd~~~~~~~~-----------~~~~~~~~l~~~~~d-----~~i~iw~~~~--~~~- 334 (424)
|+|||+.|+. ...++.. |.+||+.+++... .+. +++.++..+.+ +..++|.+.. +..
T Consensus 319 ~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~ 397 (719)
T 1z68_A 319 FSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPS 397 (719)
T ss_dssp ECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCC
T ss_pred ECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCC
Confidence 9999996654 4445531 7777877654211 122 56666655544 7788888764 210
Q ss_pred ccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEE-ecc--CcEEEEEecCCcce
Q psy3710 335 INKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVI-CAD--GSYYKFMFNSKGEC 399 (424)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~d--g~v~~~~~~~~~~~ 399 (424)
...+.. . +..+...+..+.|+||+++++.. +.+ ..+++|++. ++++
T Consensus 398 ~~~l~~--------~----------~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~-~g~~ 446 (719)
T 1z68_A 398 KKCVTC--------H----------LRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGR-TDQE 446 (719)
T ss_dssp EEESST--------T----------TTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSS-SCCE
T ss_pred ceeccC--------c----------cCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECC-CCCE
Confidence 111000 0 00012235578899999988754 333 367888875 4443
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.8e-20 Score=162.34 Aligned_cols=258 Identities=16% Similarity=0.135 Sum_probs=172.8
Q ss_pred eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccC----CeEEEEeCCCCCCCC---cccccccCCeE
Q psy3710 117 EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKS----GHVHLVDLADPERPP---LDIAAHEAPLS 189 (424)
Q Consensus 117 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d----g~i~i~d~~~~~~~~---~~~~~~~~~v~ 189 (424)
++.|.+|.+......+..+... .......++++|++++|++ ++.+ +.|.+|++....... .....+.....
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~-~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~ 103 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYS-VNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPC 103 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEE-EECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEE
T ss_pred CCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEE-EEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcE
Confidence 5689999885332222222111 2233455789999999988 5554 899999987631111 22333455677
Q ss_pred EEEEccCCCEEEEEe-cCCcEEEEEECCCcceeeEE----e-------------cceeeeeecCCCCeEEEEeecCCeEE
Q psy3710 190 CIALNQTGTRLATAS-YKGTLIRVFDTGSGQKLNEL----R-------------RGLCVLCPNSNNSLLAFPGRKSGHVH 251 (424)
Q Consensus 190 ~~~~~~~~~~l~~~~-~d~~~i~iwd~~~~~~~~~~----~-------------~~~~~~~~~~~~~~~~~~~~~dg~i~ 251 (424)
.+++ ++++|++++ .++. |.+|++.....+..+ . .+...++++|+++.+++++..++.|+
T Consensus 104 ~~~~--dg~~l~~~~~~~~~-v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~ 180 (361)
T 3scy_A 104 YLTT--NGKNIVTANYSGGS-ITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIH 180 (361)
T ss_dssp EEEE--CSSEEEEEETTTTE-EEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEEE--CCCEEEEEECCCCE-EEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEE
Confidence 7887 788777776 5677 999999754332211 1 11356899999999988787899999
Q ss_pred EEeCCCCCC------C------CeeeccCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEECCCCcee-------------
Q psy3710 252 LVDLADPER------P------PLDIAAHEAPLSCIALNQTGTRLATAS-YKGTLIRVFDTGSGQKL------------- 305 (424)
Q Consensus 252 i~d~~~~~~------~------~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~~i~iwd~~~~~~~------------- 305 (424)
+|++..... . ......+...+..++|+|||+++++++ .++. |.+|++.+++..
T Consensus 181 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~~~~~g~~~~~~~~~~~~~~~~ 259 (361)
T 3scy_A 181 KFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT-VIAFRYADGMLDEIQTVAADTVNAQ 259 (361)
T ss_dssp EEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE-EEEEEEETTEEEEEEEEESCSSCCC
T ss_pred EEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe-EEEEEecCCceEEeEEEecCCCCCC
Confidence 999886542 1 111224456688999999999888877 5777 999999876431
Q ss_pred ----eeeccCCcEEEEEeCC--CcEEEEEcc--ccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCC
Q psy3710 306 ----NELRRDSSYLCVSSDH--GTVHVFSVD--EAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSN 377 (424)
Q Consensus 306 ----~~~~~~~~~l~~~~~d--~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 377 (424)
..|+|+|++|+++..+ +.|.+|++. +++. ... ..+.. ...+..++|+|||+
T Consensus 260 ~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~-~~~-------------------~~~~~-g~~~~~~~~spdg~ 318 (361)
T 3scy_A 260 GSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL-TKV-------------------GYQLT-GIHPRNFIITPNGK 318 (361)
T ss_dssp CEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE-EEE-------------------EEEEC-SSCCCEEEECTTSC
T ss_pred CcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE-EEe-------------------eEecC-CCCCceEEECCCCC
Confidence 1377999998776654 899999996 3321 110 01111 23456899999999
Q ss_pred eEEEEe-ccCcEEEEEecC-Ccceee
Q psy3710 378 SIIVIC-ADGSYYKFMFNS-KGECWR 401 (424)
Q Consensus 378 ~l~~~~-~dg~v~~~~~~~-~~~~~~ 401 (424)
+|++++ .++.|.+|+++. ++++..
T Consensus 319 ~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 319 YLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp EEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEEEECCCCCEEEEEEECCCCcEee
Confidence 999888 578999998874 454433
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-21 Score=183.20 Aligned_cols=258 Identities=14% Similarity=0.102 Sum_probs=186.1
Q ss_pred cCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeec-CCeEEEEecCCceEEEe-e-----ccEEE
Q psy3710 50 TDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFN-APVKGVRLRRDKIVVVL-E-----GLIKV 122 (424)
Q Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~-~-----~~i~v 122 (424)
+..++..+.++||++.+++++.. |++++||++.+++..+...+. ..+..++|+|| .++++ + ....+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~------~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFS------EGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHAL 92 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEE------TTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEE
T ss_pred hccchheeecCCCCCeEEEEEcc------CCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEE
Confidence 35679999999999999998842 799999999666655444455 58999999999 55553 3 35677
Q ss_pred EeecC--CCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEE
Q psy3710 123 YTFIQ--CPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRL 200 (424)
Q Consensus 123 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 200 (424)
|.+.. .+... .+.... . ....+++|+++.++.+...++.+.+||+.++ + ...+..+.. .+++|+|||++|
T Consensus 93 ~~~~~~~~g~~~-~l~~~~-~--~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g-~-~~~l~~~~~--~~~~~spDG~~l 164 (582)
T 3o4h_A 93 FKVNTSRPGEEQ-RLEAVK-P--MRILSGVDTGEAVVFTGATEDRVALYALDGG-G-LRELARLPG--FGFVSDIRGDLI 164 (582)
T ss_dssp EEEETTSTTCCE-ECTTSC-S--BEEEEEEECSSCEEEEEECSSCEEEEEEETT-E-EEEEEEESS--CEEEEEEETTEE
T ss_pred EEEeccCCCccc-cccCCC-C--ceeeeeCCCCCeEEEEecCCCCceEEEccCC-c-EEEeecCCC--ceEEECCCCCEE
Confidence 76653 33332 232222 2 2345677777654433455555669999875 3 233333333 899999999999
Q ss_pred EEEecC----CcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEeecCC--eEEEEeCCCCCCCCeeeccCCCC
Q psy3710 201 ATASYK----GTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGRKSG--HVHLVDLADPERPPLDIAAHEAP 271 (424)
Q Consensus 201 ~~~~~d----~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~ 271 (424)
++++.+ .. |++||+.+++.. .+..+ ....+|+|+|+.++ ++..++ .|++||+.+++.. .+..|...
T Consensus 165 a~~~~~~~~~~~-i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~-~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~ 239 (582)
T 3o4h_A 165 AGLGFFGGGRVS-LFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTA-GLETAREARLVTVDPRDGSVE--DLELPSKD 239 (582)
T ss_dssp EEEEEEETTEEE-EEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEE-EEECSSCEEEEEECTTTCCEE--ECCCSCSH
T ss_pred EEEEEcCCCCeE-EEEEcCCCCCce-EeecCCCccccceECCCCCEEE-EccCCCeeEEEEEcCCCCcEE--EccCCCcC
Confidence 988877 77 999999888755 34332 57789999999988 577788 8999999887643 55677777
Q ss_pred eEEEE--------EcCCCCEEEEEeCCCcEEEEEECCCCceee---------eeccCCcEEEEEeCCCc---EEEEEccc
Q psy3710 272 LSCIA--------LNQTGTRLATASYKGTLIRVFDTGSGQKLN---------ELRRDSSYLCVSSDHGT---VHVFSVDE 331 (424)
Q Consensus 272 v~~~~--------~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~---------~~~~~~~~l~~~~~d~~---i~iw~~~~ 331 (424)
+..++ |+|||.++++++.++. +++|++ |+.+. .++ +++++++++.+.. +++|+..+
T Consensus 240 ~~~~~~~~~~~~~~spdg~~~~~~~~~g~-~~l~~~--g~~~~~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 240 FSSYRPTAITWLGYLPDGRLAVVARREGR-SAVFID--GERVEAPQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp HHHHCCSEEEEEEECTTSCEEEEEEETTE-EEEEET--TEEECCCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred hhhhhhccccceeEcCCCcEEEEEEcCCc-EEEEEE--CCeeccCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 77777 9999999999999999 999999 65442 356 8888888877743 66666654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-19 Score=160.17 Aligned_cols=265 Identities=12% Similarity=0.049 Sum_probs=173.4
Q ss_pred eEEEEeCC--cCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC--CcEEE--EEe-ecCCeEE
Q psy3710 32 GFRIYNCD--PLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK--KQVVI--CLE-FNAPVKG 104 (424)
Q Consensus 32 ~i~iw~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~--~~~~~--~~~-~~~~v~~ 104 (424)
+|.+|.++ +++.......+......++|+|+++++++++... ..++.+.+|++.. ++... ... +...+..
T Consensus 28 ~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~---~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~ 104 (361)
T 3scy_A 28 GIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFS---KDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCY 104 (361)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCS---STTCEEEEEEEETTTTEEEEEEEEECSSSCEEE
T ss_pred CEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccC---CCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEE
Confidence 48888764 4444222222566778899999999999888420 0137999998765 44322 233 3456777
Q ss_pred EEecCCce-EEEe---eccEEEEeecCCCcee--EEEeeCCC---------CCeeEEEeecCCCCeEEEeeccCCeEEEE
Q psy3710 105 VRLRRDKI-VVVL---EGLIKVYTFIQCPQQL--HVFETNPN---------PKGLCVLCPNSNNSLLAFPGRKSGHVHLV 169 (424)
Q Consensus 105 ~~~~~~~~-~~~~---~~~i~v~~~~~~~~~~--~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~dg~i~i~ 169 (424)
+++ ++. ++++ ++.|.+|++...+... .....+.. ...+..++++|+++++++++..++.|.+|
T Consensus 105 ~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~ 182 (361)
T 3scy_A 105 LTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKF 182 (361)
T ss_dssp EEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEE
Confidence 888 443 3333 6799999996333221 11111111 12246789999999887756678999999
Q ss_pred eCCCCCC----C-C-------cccccccCCeEEEEEccCCCEEEEEe-cCCcEEEEEECCCcce--eeEEecc------e
Q psy3710 170 DLADPER----P-P-------LDIAAHEAPLSCIALNQTGTRLATAS-YKGTLIRVFDTGSGQK--LNELRRG------L 228 (424)
Q Consensus 170 d~~~~~~----~-~-------~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~~i~iwd~~~~~~--~~~~~~~------~ 228 (424)
++..... . + .....+...+..++|+|+|+++++++ .++. |.+||+.+++. +..+... .
T Consensus 183 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~~~~~g~~~~~~~~~~~~~~~~~~ 261 (361)
T 3scy_A 183 NINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT-VIAFRYADGMLDEIQTVAADTVNAQGS 261 (361)
T ss_dssp EECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE-EEEEEEETTEEEEEEEEESCSSCCCCE
T ss_pred EEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe-EEEEEecCCceEEeEEEecCCCCCCCc
Confidence 9886432 1 1 11223345678999999999888777 5788 99999987654 2333221 3
Q ss_pred eeeeecCCCCeEEEEeec-CCeEEEEeCCC--CCC-CCeeeccCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEE--CCC
Q psy3710 229 CVLCPNSNNSLLAFPGRK-SGHVHLVDLAD--PER-PPLDIAAHEAPLSCIALNQTGTRLATASY-KGTLIRVFD--TGS 301 (424)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~-dg~i~i~d~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~~i~iwd--~~~ 301 (424)
..++++|+++.++++... ++.|.+|++.. +.. ....+.. ...+.+++|+|||++|++++. ++. |.+|+ ..+
T Consensus 262 ~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~-v~v~~~d~~~ 339 (361)
T 3scy_A 262 GDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNV-IQIFERDQAT 339 (361)
T ss_dssp EEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTE-EEEEEECTTT
T ss_pred ccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCC-EEEEEEECCC
Confidence 478999999998887766 79999999963 221 1222323 457789999999998888874 566 88854 445
Q ss_pred Cce
Q psy3710 302 GQK 304 (424)
Q Consensus 302 ~~~ 304 (424)
++.
T Consensus 340 g~~ 342 (361)
T 3scy_A 340 GLL 342 (361)
T ss_dssp CCE
T ss_pred CcE
Confidence 543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-20 Score=164.81 Aligned_cols=318 Identities=11% Similarity=0.015 Sum_probs=186.8
Q ss_pred EEeCCcCcccccccccCCCeee-----EEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEee-cCCeEEEEec
Q psy3710 35 IYNCDPLKEKERQDFTDGGLGH-----VEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEF-NAPVKGVRLR 108 (424)
Q Consensus 35 iw~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~ 108 (424)
.++..++........+...... .+|+|+++++++++... ....|.+||+.+++....... ...+..+.|+
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~----g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~s 89 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFD----GPWNYYLLDLNTQVATQLTEGRGDNTFGGFLS 89 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTT----SSCEEEEEETTTCEEEECCCSSCBCSSSCEEC
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCC----CCceEEEEeCCCCceEEeeeCCCCCccceEEc
Confidence 3455555554444444444444 78999999999998421 122699999998887765553 3344467899
Q ss_pred CCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEe---------------------eccCC
Q psy3710 109 RDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFP---------------------GRKSG 164 (424)
Q Consensus 109 ~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------------------~~~dg 164 (424)
||+..++. ++.|++||+. +++.......+........+.++++++.++.. ...+.
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~-~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (388)
T 3pe7_A 90 PDDDALFYVKDGRNLMRVDLA-TLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCC 168 (388)
T ss_dssp TTSSEEEEEETTTEEEEEETT-TCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCE
T ss_pred CCCCEEEEEeCCCeEEEEECC-CCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcc
Confidence 99977765 5689999996 56555555544432222334458999988741 12347
Q ss_pred eEEEEeCCCCCCCCcccccccCCeEEEEEcc-CCCEEEEEecC------CcEEEEEECCCcceeeEEec----ceeeeee
Q psy3710 165 HVHLVDLADPERPPLDIAAHEAPLSCIALNQ-TGTRLATASYK------GTLIRVFDTGSGQKLNELRR----GLCVLCP 233 (424)
Q Consensus 165 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~~i~iwd~~~~~~~~~~~~----~~~~~~~ 233 (424)
.|.+||+.++ ....+..+...+..++|+| +|+.|+....+ .. |.++|...++....... .....+|
T Consensus 169 ~l~~~d~~~g--~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~-l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 245 (388)
T 3pe7_A 169 RLMRVDLKTG--ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDAR-MWLINEDGTNMRKVKTHAEGESCTHEFW 245 (388)
T ss_dssp EEEEEETTTC--CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCS-EEEEETTSCCCEESCCCCTTEEEEEEEE
T ss_pred eEEEEECCCC--ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcce-EEEEeCCCCceEEeeeCCCCcccccceE
Confidence 8999999875 3455556777899999999 99998887753 36 88888876543322222 1445689
Q ss_pred cCCCCeEEEEeecCC----eEEEEeCCCCCCCC-eeeccCCC---CeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCcee
Q psy3710 234 NSNNSLLAFPGRKSG----HVHLVDLADPERPP-LDIAAHEA---PLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL 305 (424)
Q Consensus 234 ~~~~~~~~~~~~~dg----~i~i~d~~~~~~~~-~~~~~~~~---~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~ 305 (424)
+|+++.+++.+..++ .|++||+.+++... ..+.++.. ....++|+|||+.|+....++.
T Consensus 246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~------------- 312 (388)
T 3pe7_A 246 VPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDS------------- 312 (388)
T ss_dssp CTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC---------------------
T ss_pred CCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecc-------------
Confidence 999998887665543 39999998876311 11111000 0111256677666664432210
Q ss_pred eeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEec-
Q psy3710 306 NELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICA- 384 (424)
Q Consensus 306 ~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~- 384 (424)
..+...+..|++||+.+++.. .+..... .|.... ......+..++|+|||++|++.+.
T Consensus 313 ---------~~~~~~~~~i~~~d~~~~~~~-~l~~~~~----------~~~~~~-~~~~~~~~~~~~spDg~~l~~~s~~ 371 (388)
T 3pe7_A 313 ---------GYKIENDPFLYVFNMKNGTQH-RVARHDT----------SWKVFE-GDRQVTHPHPSFTPDDKQILFTSDV 371 (388)
T ss_dssp -------------CCCCEEEEEETTTTEEE-EEEECCC----------CCCCBT-TBSSTTCCCCEECTTSSEEEEEECT
T ss_pred ---------ccccCCCCEEEEEeccCCceE-EeccccC----------cccccc-cccccCCCCccCCCCCCEEEEEecC
Confidence 001123445666666554321 1000000 000000 000012456799999998887664
Q ss_pred cCcEEEEEec
Q psy3710 385 DGSYYKFMFN 394 (424)
Q Consensus 385 dg~v~~~~~~ 394 (424)
+|...+|.++
T Consensus 372 ~g~~~l~~~~ 381 (388)
T 3pe7_A 372 HGKPALYLAT 381 (388)
T ss_dssp TSSCEEEEEE
T ss_pred CCceeEEEEE
Confidence 7877888775
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-19 Score=174.82 Aligned_cols=289 Identities=10% Similarity=0.071 Sum_probs=192.6
Q ss_pred CCeEEEEecCCceEEEe-eccEEEEeecCCCceeEEEeeCCCC-Cee--EEEeecCCCCeEEEeeccC---------CeE
Q psy3710 100 APVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNP-KGL--CVLCPNSNNSLLAFPGRKS---------GHV 166 (424)
Q Consensus 100 ~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~l~~~~~~d---------g~i 166 (424)
....++.|+||+.++++ ++.|++||+. +++....+..+... ..+ ..+.+||||++|++ ++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~-~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQENNILVFNAE-YGNSSVFLENSTFDEFGHSINDYSISPDGQFILL-EYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEETTEEEEEETT-TCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEE-EEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEcCCcEEEEECC-CCceEEEEechhhhhhcccccceEECCCCCEEEE-EECCeeeEEEccceEE
Confidence 34668999999988887 8999999996 66666666665432 112 23788999999998 6655 667
Q ss_pred EEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe-cc------------------
Q psy3710 167 HLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-RG------------------ 227 (424)
Q Consensus 167 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~------------------ 227 (424)
.+||+.++ + ...+..|...+...+|||||+.|+.+. ++. |++||+.+++..+... +.
T Consensus 95 ~~~d~~~~-~-~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~-i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 95 DIYDLNKR-Q-LITEERIPNNTQWVTWSPVGHKLAYVW-NND-IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEETTTT-E-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTE-EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEECCCC-c-EEEcccCCCcceeeEECCCCCEEEEEE-CCe-EEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 89999985 2 345667788899999999999999885 677 9999998876543211 11
Q ss_pred --eeeeeecCCCCeEEEEeecCC-----------------------------------eEEEEeCCC---CCC-CCeeec
Q psy3710 228 --LCVLCPNSNNSLLAFPGRKSG-----------------------------------HVHLVDLAD---PER-PPLDIA 266 (424)
Q Consensus 228 --~~~~~~~~~~~~~~~~~~~dg-----------------------------------~i~i~d~~~---~~~-~~~~~~ 266 (424)
...+.|+|+|+.+++....++ .|++||+.+ ++. ....+.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 123789999999998643322 588899988 632 122222
Q ss_pred ------cCCCCeEEEEEcCCCCEEEEEeC----CCcEEEEEECCCCc-------ee------------------eeeccC
Q psy3710 267 ------AHEAPLSCIALNQTGTRLATASY----KGTLIRVFDTGSGQ-------KL------------------NELRRD 311 (424)
Q Consensus 267 ------~~~~~v~~~~~~~~~~~l~~~~~----d~~~i~iwd~~~~~-------~~------------------~~~~~~ 311 (424)
+|...+..++|+|||+.++.... +.. |++||+.+++ .. -.|+||
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~-i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD 329 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSV-MDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD 329 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEE-EEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEE-EEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence 37788999999999997666543 235 9999998876 11 146789
Q ss_pred CcEEE-EEeC-C--CcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEecc--
Q psy3710 312 SSYLC-VSSD-H--GTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICAD-- 385 (424)
Q Consensus 312 ~~~l~-~~~~-d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-- 385 (424)
|+.++ ..+. + ..|++|++.+++...- . .+.|. +.. .+.+|++.|+..+..
T Consensus 330 G~~l~~~~s~~~G~~~l~~~~~~~~~~~~l-T------------~g~~~----------v~~-~~~~d~~~i~f~~~~~~ 385 (740)
T 4a5s_A 330 GNSFYKIISNEEGYRHICYFQIDKKDCTFI-T------------KGTWE----------VIG-IEALTSDYLYYISNEYK 385 (740)
T ss_dssp SSEEEEEEECTTSCEEEEEEETTCSSCEES-C------------CSSSC----------EEE-EEEECSSEEEEEESCGG
T ss_pred CCEEEEEEEcCCCceEEEEEECCCCceEec-c------------cCCEE----------EEE-EEEEeCCEEEEEEecCC
Confidence 99877 6653 3 4678888876543211 1 11222 112 123556766655443
Q ss_pred ---CcEEEEEecCCcceee---e-------eehhhheecCCCceeeE
Q psy3710 386 ---GSYYKFMFNSKGECWR---D-------VYIQFLEMTNDSNLLSC 419 (424)
Q Consensus 386 ---g~v~~~~~~~~~~~~~---~-------~~~~~~~~~~d~~~l~~ 419 (424)
+...+|.++..+...+ + .......++||+++++.
T Consensus 386 ~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~ 432 (740)
T 4a5s_A 386 GMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQL 432 (740)
T ss_dssp GCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEE
T ss_pred CCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEE
Confidence 4567776664432211 1 12334678999998764
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-19 Score=163.00 Aligned_cols=198 Identities=11% Similarity=0.121 Sum_probs=136.5
Q ss_pred EeecCCeEEEEecCCceEEE----e---eccEEEEeecCC-----C--ce---eEEEeeCCCCCeeEEEeecCC-CCeEE
Q psy3710 96 LEFNAPVKGVRLRRDKIVVV----L---EGLIKVYTFIQC-----P--QQ---LHVFETNPNPKGLCVLCPNSN-NSLLA 157 (424)
Q Consensus 96 ~~~~~~v~~~~~~~~~~~~~----~---~~~i~v~~~~~~-----~--~~---~~~~~~~~~~~~~~~~~~~~~-~~~l~ 157 (424)
+.+...|.+++|+|++.+++ + |+.|++||+... . +. +..+..|. ..+.+++|+|+ +.+|+
T Consensus 89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~~~p~~~~~la 166 (434)
T 2oit_A 89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAG--GMVIDMKWNPTVPSMVA 166 (434)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGG--GSEEEEEECSSCTTEEE
T ss_pred ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCC--CceEEEEECCCCCCEEE
Confidence 34567789999999987777 4 889999988521 0 22 22233344 45889999998 67777
Q ss_pred EeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEec----------c
Q psy3710 158 FPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR----------G 227 (424)
Q Consensus 158 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~----------~ 227 (424)
+ ++.||.|++||++++ .......+|...|.+++|+|+|++|++++.|+. |++||++ ++....+.. .
T Consensus 167 s-~s~Dg~v~iwD~~~~-~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~-v~iwd~~-~~~~~~~~~~~~~~~~~~~~ 242 (434)
T 2oit_A 167 V-CLADGSIAVLQVTET-VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT-VVQYLPT-LQEKKVIPCPPFYESDHPVR 242 (434)
T ss_dssp E-EETTSCEEEEEESSS-EEEEEEECGGGCEEEEEECTTSSCEEEEETTSC-EEEECTT-CCEEEEECCCTTCCTTSCEE
T ss_pred E-EECCCeEEEEEcCCC-cceeeccCCCCceeEEEEcCCCCEEEEEcCCCc-EEEEccC-CcccccccCCcccCCCCcee
Confidence 7 999999999999986 444455678899999999999999999999999 9999998 555544432 3
Q ss_pred eeeeeecCCCCeEEEEeecCC------eEEEEeCCCCCCC-Ceeec----------cCCCCeEEEEEcCCCCEEEEEeCC
Q psy3710 228 LCVLCPNSNNSLLAFPGRKSG------HVHLVDLADPERP-PLDIA----------AHEAPLSCIALNQTGTRLATASYK 290 (424)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~dg------~i~i~d~~~~~~~-~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~d 290 (424)
+..+++++++..+++....+| .+++|++++.+.. ...+. ....+-..+.+-++.+++++++..
T Consensus 243 v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~ 322 (434)
T 2oit_A 243 VLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAA 322 (434)
T ss_dssp EEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETT
T ss_pred EEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCC
Confidence 556788887777766666654 3899999865321 11111 222233334444777777766654
Q ss_pred CcEEEEEEC
Q psy3710 291 GTLIRVFDT 299 (424)
Q Consensus 291 ~~~i~iwd~ 299 (424)
...|.+...
T Consensus 323 s~dv~vl~~ 331 (434)
T 2oit_A 323 STEVSILAR 331 (434)
T ss_dssp CSBCEEEEE
T ss_pred CCceeEEEe
Confidence 433666654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-19 Score=163.06 Aligned_cols=313 Identities=12% Similarity=0.045 Sum_probs=196.1
Q ss_pred EEeCCcCcccccccccCC-----CeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeE-EEEec
Q psy3710 35 IYNCDPLKEKERQDFTDG-----GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVK-GVRLR 108 (424)
Q Consensus 35 iw~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~-~~~~~ 108 (424)
..|..+++.......+.. .+..++|+|+++.++++.... .+..|.+||+.+++............ .+.|+
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~----g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~s 89 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFD----GNRNYYLLNLETQQAVQLTEGKGDNTFGGFIS 89 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTT----SSCEEEEEETTTTEEEECCCSSCBCTTTCEEC
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecC----CCceEEEEECCCCcEEEeecCCCCccccceEC
Confidence 335566554333333222 266789999999998887431 24589999998887654433333333 37899
Q ss_pred CCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCccccccc
Q psy3710 109 RDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHE 185 (424)
Q Consensus 109 ~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 185 (424)
||+..++. ++.|++|++. .++.......+.. ++++++.|+. ...++...+|..
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~-~~~~~~~~~~~~~--------~~~~g~~l~~-~~~~~~~~~~~~-------------- 145 (396)
T 3c5m_A 90 TDERAFFYVKNELNLMKVDLE-TLEEQVIYTVDEE--------WKGYGTWVAN-SDCTKLVGIEIL-------------- 145 (396)
T ss_dssp TTSSEEEEEETTTEEEEEETT-TCCEEEEEECCTT--------EEEEEEEEEC-TTSSEEEEEEEE--------------
T ss_pred CCCCEEEEEEcCCcEEEEECC-CCCcEEEEecccc--------cCCCCCEEEe-ccCCcccccccc--------------
Confidence 99977765 5679999986 5554443333321 5567777877 666555554431
Q ss_pred CCeEEEEEccCCCEEEEE-----ecCCcEEEEEECCCcceeeEEec--ceeeeeecC-CCCeEEEEeecC-----CeEEE
Q psy3710 186 APLSCIALNQTGTRLATA-----SYKGTLIRVFDTGSGQKLNELRR--GLCVLCPNS-NNSLLAFPGRKS-----GHVHL 252 (424)
Q Consensus 186 ~~v~~~~~~~~~~~l~~~-----~~d~~~i~iwd~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~d-----g~i~i 252 (424)
.+.|+|+++.++.. ..+.. |++||+.+++....... .+..+.++| ++..+++..... ..|.+
T Consensus 146 ----~~~~spdg~~~~~~~~~~~~~~~~-l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~ 220 (396)
T 3c5m_A 146 ----KRDWQPLTSWEKFAEFYHTNPTCR-LIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWL 220 (396)
T ss_dssp ----GGGCCCCCSHHHHHHHHHTCCCEE-EEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEE
T ss_pred ----ccccCCCCcceeeeeeccCCCcce-EEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEE
Confidence 23467888877654 34556 99999988876544432 356778999 677777654322 46899
Q ss_pred EeCCCCCCCCeeeccC--CCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEECCCCceee---------eecc-CCcEE
Q psy3710 253 VDLADPERPPLDIAAH--EAPLSCIALNQTGTRLATASYK-----GTLIRVFDTGSGQKLN---------ELRR-DSSYL 315 (424)
Q Consensus 253 ~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d-----~~~i~iwd~~~~~~~~---------~~~~-~~~~l 315 (424)
||+..... ..+..+ ...+..++|+|||++|+.++.+ +. |++||+.+++... .++| +|+++
T Consensus 221 ~d~~~~~~--~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~-l~~~d~~~g~~~~l~~~~~~~~~~s~~dg~~l 297 (396)
T 3c5m_A 221 VNEDGSNV--RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRV-IYKANPETLENEEVMVMPPCSHLMSNFDGSLM 297 (396)
T ss_dssp EETTSCCC--EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEE-EEEECTTTCCEEEEEECCSEEEEEECSSSSEE
T ss_pred EECCCCce--eEeeccCCCccccceEECCCCCEEEEEecCCCCccce-EEEEECCCCCeEEeeeCCCCCCCccCCCCceE
Confidence 99876442 222222 2357889999999988877654 55 9999998875432 4678 99988
Q ss_pred EEEe----------------CCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeE
Q psy3710 316 CVSS----------------DHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSI 379 (424)
Q Consensus 316 ~~~~----------------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 379 (424)
++++ .+..|++||+.+++.. .+..... .|.... ..........+|+|||++|
T Consensus 298 ~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~----------~~~~~~-~~~~~~~~~~~~s~dg~~l 365 (396)
T 3c5m_A 298 VGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHST----------SWDVLD-GDRQITHPHPSFTPNDDGV 365 (396)
T ss_dssp EEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCC----------CCCCBT-TBSSTTCCCCEECTTSSEE
T ss_pred EEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCC----------cccccc-ccccCCCCCceEccCCCeE
Confidence 8765 3478999999876531 1111000 000000 0000013456899999998
Q ss_pred EEEec-cCcEEEEEecC
Q psy3710 380 IVICA-DGSYYKFMFNS 395 (424)
Q Consensus 380 ~~~~~-dg~v~~~~~~~ 395 (424)
++++. ++...+|.++.
T Consensus 366 ~~~s~~~~~~~l~~~~~ 382 (396)
T 3c5m_A 366 LFTSDFEGVPAIYIADV 382 (396)
T ss_dssp EEEECTTSSCEEEEEEC
T ss_pred EEEecCCCCceEEEEEE
Confidence 87765 56667776653
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-18 Score=155.23 Aligned_cols=260 Identities=8% Similarity=0.014 Sum_probs=173.6
Q ss_pred eEEEEeCC--cCccccccc---ccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECC-CCcEEEEEeec--CCeE
Q psy3710 32 GFRIYNCD--PLKEKERQD---FTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL-KKQVVICLEFN--APVK 103 (424)
Q Consensus 32 ~i~iw~~~--~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~--~~v~ 103 (424)
+|.+|+++ +++...... .....+..++++|+++++++++ .+ .|.+|++. +++......+. +.+.
T Consensus 15 ~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~-------~~-~v~~~~~~~~g~~~~~~~~~~~g~~~ 86 (365)
T 1jof_A 15 AIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA-------MK-KWSSFAVKSPTEIVHEASHPIGGHPR 86 (365)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE-------BT-EEEEEEEEETTEEEEEEEEECCSSGG
T ss_pred cEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEc-------cc-eEEEEEECCCCCEEEeeEeecCCCCc
Confidence 47777653 444322111 1234677899999999988777 34 99999987 77765544432 4466
Q ss_pred EEEecCCceE--EE----------------eeccEEEEeecCCCceeEEEee--CCCCCeeEEEeecCCCCeEEEeeccC
Q psy3710 104 GVRLRRDKIV--VV----------------LEGLIKVYTFIQCPQQLHVFET--NPNPKGLCVLCPNSNNSLLAFPGRKS 163 (424)
Q Consensus 104 ~~~~~~~~~~--~~----------------~~~~i~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~d 163 (424)
.++++|++.. ++ .++.+.+|++...++....+.. +.....+..++++|+|++++++...+
T Consensus 87 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~ 166 (365)
T 1jof_A 87 ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTA 166 (365)
T ss_dssp GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred cEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCC
Confidence 7899999973 32 2467999999644554443332 12234577889999999888744457
Q ss_pred CeEEEEeCC-CCCCCC--cccc--cccCCeEEEEEccCCCEEEEEec-CCcEEEEEECC--Ccceee---EEe---c---
Q psy3710 164 GHVHLVDLA-DPERPP--LDIA--AHEAPLSCIALNQTGTRLATASY-KGTLIRVFDTG--SGQKLN---ELR---R--- 226 (424)
Q Consensus 164 g~i~i~d~~-~~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~~~~~-d~~~i~iwd~~--~~~~~~---~~~---~--- 226 (424)
+.|.+||+. ++ +.. ..+. .|...+..++|+|+|+++++++. ++. |.+|++. +++... .+. .
T Consensus 167 ~~v~~~~~~~~g-~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~-v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 244 (365)
T 1jof_A 167 NKLWTHRKLASG-EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNR-ICEYVIDPATHMPVYTHHSFPLIPPGIP 244 (365)
T ss_dssp TEEEEEEECTTS-CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTTCCEEEEEEEEESSCTTCC
T ss_pred CEEEEEEECCCC-CEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCe-EEEEEEeCCCCcEEEccceEEcCCCCcC
Confidence 899999998 54 221 1222 23567899999999999988775 577 9999765 455421 221 1
Q ss_pred ----------ceeeee-ecCCCCeEEEEeecCC-----eEEEEeCCCCCCCCe---eeccCCCCeEEEEEcC---CCCEE
Q psy3710 227 ----------GLCVLC-PNSNNSLLAFPGRKSG-----HVHLVDLADPERPPL---DIAAHEAPLSCIALNQ---TGTRL 284 (424)
Q Consensus 227 ----------~~~~~~-~~~~~~~~~~~~~~dg-----~i~i~d~~~~~~~~~---~~~~~~~~v~~~~~~~---~~~~l 284 (424)
....++ ++|+++.++++...++ .|.+|++........ ....+...+..++|+| ||++|
T Consensus 245 g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l 324 (365)
T 1jof_A 245 DRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWM 324 (365)
T ss_dssp CBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEE
T ss_pred CcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEE
Confidence 245678 9999998877655444 899999963222221 1223455567889999 78888
Q ss_pred EEEeCC-CcEEEEEECCCC
Q psy3710 285 ATASYK-GTLIRVFDTGSG 302 (424)
Q Consensus 285 ~~~~~d-~~~i~iwd~~~~ 302 (424)
++++.+ +. |++|++...
T Consensus 325 ~v~~~~~~~-v~v~~~~~~ 342 (365)
T 1jof_A 325 AITDDQEGW-LEIYRWKDE 342 (365)
T ss_dssp EEECSSSCE-EEEEEEETT
T ss_pred EEEEcCCCe-EEEEEEchh
Confidence 888765 66 888887654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=8.3e-19 Score=155.02 Aligned_cols=263 Identities=13% Similarity=0.138 Sum_probs=180.3
Q ss_pred eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeec----------cCCeEEEEeCCCCCCCCccccc---
Q psy3710 117 EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGR----------KSGHVHLVDLADPERPPLDIAA--- 183 (424)
Q Consensus 117 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~dg~i~i~d~~~~~~~~~~~~~--- 183 (424)
|+.|.+||.. +++.+..+..... . .++++||++++++ +. .++.|.+||..+. +.+..+..
T Consensus 30 d~~v~v~D~~-t~~~~~~i~~g~~---p-~i~~spdg~~lyv-~~~~~~~~~~g~~~~~v~v~d~~t~-~~~~~i~~~~~ 102 (361)
T 2oiz_A 30 ESRVHVYDYT-NGKFLGMVPTAFN---G-HVQVSNDGKKIYT-MTTYHERITRGKRSDVVEVWDADKL-TFEKEISLPPK 102 (361)
T ss_dssp GCEEEEEETT-TCCEEEEEECCEE---E-EEEECTTSSEEEE-EEEEETTSSSSCEEEEEEEEETTTC-CEEEEEEECTT
T ss_pred cCeEEEEECC-CCeEEEEecCCCC---C-ceEECCCCCEEEE-EEecccccccCCCCCEEEEEECcCC-cEEEEEEcCcc
Confidence 3466777764 5555555554322 2 6799999999998 43 3678999999875 44444432
Q ss_pred ---ccCCeEEEEEccCCCEEEEEec--CCcEEEEEECCCcceeeE-Eecc-eeeeeecCCCCeEEEEeecCCeEEEEeCC
Q psy3710 184 ---HEAPLSCIALNQTGTRLATASY--KGTLIRVFDTGSGQKLNE-LRRG-LCVLCPNSNNSLLAFPGRKSGHVHLVDLA 256 (424)
Q Consensus 184 ---~~~~v~~~~~~~~~~~l~~~~~--d~~~i~iwd~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~dg~i~i~d~~ 256 (424)
+......++++|+|++|+++.. ++. |.+||+.+++.+.. +..+ ...+.+.|.+...+++.+.||.+.+++..
T Consensus 103 ~~~~g~~p~~i~~spdg~~l~v~n~~~~~~-v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 103 RVQGLNYDGLFRQTTDGKFIVLQNASPATS-IGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLG 181 (361)
T ss_dssp BCCBCCCGGGEEECTTSSEEEEEEESSSEE-EEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred ccccCCCcceEEECCCCCEEEEECCCCCCe-EEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence 2345678999999999998875 467 99999999988877 5543 22245677776677778899999999986
Q ss_pred CCCCCC------eeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCce------------------------ee
Q psy3710 257 DPERPP------LDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK------------------------LN 306 (424)
Q Consensus 257 ~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~------------------------~~ 306 (424)
...... ..+..+..++ .+.++|++..++..+.++. |.++|+..+.. ..
T Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~-v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~ 259 (361)
T 2oiz_A 182 EDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGN-VYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLV 259 (361)
T ss_dssp TTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSE-EEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCE
T ss_pred CCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCe-EEEEEecCCCceecccccccCccccccccccCCeeEE
Confidence 533222 1112222222 3344677888888888888 99999864321 12
Q ss_pred eeccCCcEEEEEeC-----------CCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecC
Q psy3710 307 ELRRDSSYLCVSSD-----------HGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGAD 375 (424)
Q Consensus 307 ~~~~~~~~l~~~~~-----------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 375 (424)
.++|+++.+.++.. .+.|.+||+.+++.+.++. .+. ...++|+||
T Consensus 260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~----------------------~~~--p~~ia~spd 315 (361)
T 2oiz_A 260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP----------------------GRD--ALSMTIDQQ 315 (361)
T ss_dssp EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE----------------------CTT--CCEEEEETT
T ss_pred EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe----------------------cCC--eeEEEECCC
Confidence 46778777766543 3479999999977654422 222 568999999
Q ss_pred CCeEEEEeccCcEEEEEecCCc--ceeeee-----ehhhheecCCCc
Q psy3710 376 SNSIIVICADGSYYKFMFNSKG--ECWRDV-----YIQFLEMTNDSN 415 (424)
Q Consensus 376 ~~~l~~~~~dg~v~~~~~~~~~--~~~~~~-----~~~~~~~~~d~~ 415 (424)
|++|++++. +.|.+||.. ++ ++++.. .-..+.++|||.
T Consensus 316 g~~l~v~n~-~~v~v~D~~-t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 316 RNLMLTLDG-GNVNVYDIS-QPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TTEEEEECS-SCEEEEECS-SSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCEEEEeCC-CeEEEEECC-CCcceeeEEeccCCCCcEEEEecCCCC
Confidence 999998886 999999987 56 555542 124567888885
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=8.1e-19 Score=155.84 Aligned_cols=254 Identities=11% Similarity=0.077 Sum_probs=166.5
Q ss_pred ccEEEEeecCCCceeEEEeeC--CCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCC-CCCCCCccccccc--CCeEEEE
Q psy3710 118 GLIKVYTFIQCPQQLHVFETN--PNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLA-DPERPPLDIAAHE--APLSCIA 192 (424)
Q Consensus 118 ~~i~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~-~~~~~~~~~~~~~--~~v~~~~ 192 (424)
+.|.+|++......+..+... ........++++|++++|++ ++.+ .|.+|++. ++ +..... .+. +.+..++
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~-~~~~-~v~~~~~~~~g-~~~~~~-~~~~~g~~~~~~ 89 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYG-AAMK-KWSSFAVKSPT-EIVHEA-SHPIGGHPRAND 89 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEE-EEBT-EEEEEEEEETT-EEEEEE-EEECCSSGGGGC
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEE-Eccc-eEEEEEECCCC-CEEEee-EeecCCCCccEE
Confidence 468887774322222222211 11123556889999998887 6666 99999997 54 322221 121 3356689
Q ss_pred EccCCCE--EEEEe-------------cCCcEEEEEECC-CcceeeEEe-------cceeeeeecCCCCeEEEEeecCCe
Q psy3710 193 LNQTGTR--LATAS-------------YKGTLIRVFDTG-SGQKLNELR-------RGLCVLCPNSNNSLLAFPGRKSGH 249 (424)
Q Consensus 193 ~~~~~~~--l~~~~-------------~d~~~i~iwd~~-~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~dg~ 249 (424)
|+|+|++ +++++ .++. +.+|++. +++....+. .+...++++|+++.++++...++.
T Consensus 90 ~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~-v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~ 168 (365)
T 1jof_A 90 ADTNTRAIFLLAAKQPPYAVYANPFYKFAGY-GNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANK 168 (365)
T ss_dssp TTSCCEEEEEEECSSTTCCEEEEEESSSCCE-EEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred ECCCCCEEEEEEecCCcceeccceeecCCce-EEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCE
Confidence 9999994 44553 5888 9999997 465543332 236778999999988776556789
Q ss_pred EEEEeCC-CCCCC-Ceeec--cCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEECC--CCcee-----------------
Q psy3710 250 VHLVDLA-DPERP-PLDIA--AHEAPLSCIALNQTGTRLATASY-KGTLIRVFDTG--SGQKL----------------- 305 (424)
Q Consensus 250 i~i~d~~-~~~~~-~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-d~~~i~iwd~~--~~~~~----------------- 305 (424)
|++||+. +++.. ...+. .|...+..++|+|||+++++++. ++. |.+|++. +++..
T Consensus 169 v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~-v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 247 (365)
T 1jof_A 169 LWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNR-ICEYVIDPATHMPVYTHHSFPLIPPGIPDRD 247 (365)
T ss_dssp EEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTTCCEEEEEEEEESSCTTCCCBC
T ss_pred EEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCe-EEEEEEeCCCCcEEEccceEEcCCCCcCCcc
Confidence 9999998 55421 12222 24667999999999999988876 567 9998754 44321
Q ss_pred -----------ee-eccCCcEEEEEeCCC------cEEEEEcc-ccccccccccceeeeccCccccCCceeeEEeecCCC
Q psy3710 306 -----------NE-LRRDSSYLCVSSDHG------TVHVFSVD-EAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDP 366 (424)
Q Consensus 306 -----------~~-~~~~~~~l~~~~~d~------~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (424)
.. |+|+|++|++++.+. .|.+|++. +++.. .... ....+...
T Consensus 248 ~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~-~~~~------------------~~~~~~~~ 308 (365)
T 1jof_A 248 PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE-KQLF------------------LSPTPTSG 308 (365)
T ss_dssp TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE-EEEE------------------EEECSSCC
T ss_pred cccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE-Eeee------------------eeecCCCC
Confidence 13 789999888765432 89999996 44321 1000 01111223
Q ss_pred ceEEEEec---CCCeEEEEecc-CcEEEEEecCC
Q psy3710 367 PCICAFGA---DSNSIIVICAD-GSYYKFMFNSK 396 (424)
Q Consensus 367 ~~~~~~s~---~~~~l~~~~~d-g~v~~~~~~~~ 396 (424)
...++|+| ||++|++++.+ +.|.+|+++..
T Consensus 309 ~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 309 GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred cccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 45678999 89999999875 89999999744
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-19 Score=160.91 Aligned_cols=274 Identities=10% Similarity=-0.014 Sum_probs=177.7
Q ss_pred ceEEEEECCCCCeeEeecCC----eEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEEC
Q psy3710 12 GLLYAGFNQDQGCFACGMED----GFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDD 87 (424)
Q Consensus 12 ~V~~~~~s~~g~~la~g~~~----~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~ 87 (424)
.+..++|||||++|+..... .|.+|++++++.......+......+.|+|+++.+++++ .++.|++||+
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~-------~~~~l~~~d~ 109 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVK-------NELNLMKVDL 109 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEE-------TTTEEEEEET
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEE-------cCCcEEEEEC
Confidence 37788999999998866433 288899888765433332222233478999999999998 4578999999
Q ss_pred CCCcEEEEEee-cCCeEE-------------------EEecCCceEEEe--------eccEEEEeecCCCceeEEEeeCC
Q psy3710 88 LKKQVVICLEF-NAPVKG-------------------VRLRRDKIVVVL--------EGLIKVYTFIQCPQQLHVFETNP 139 (424)
Q Consensus 88 ~~~~~~~~~~~-~~~v~~-------------------~~~~~~~~~~~~--------~~~i~v~~~~~~~~~~~~~~~~~ 139 (424)
.+++....... ...... +.++|++..++. +..|.+||+. +++..... .+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~-~g~~~~~~-~~~ 187 (396)
T 3c5m_A 110 ETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIE-TGELEVIH-QDT 187 (396)
T ss_dssp TTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETT-TCCEEEEE-EES
T ss_pred CCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECC-CCcEEeec-cCC
Confidence 98887665552 222222 245666654432 4578889986 44443333 222
Q ss_pred CCCeeEEEeecC-CCCeEEEeeccC------CeEEEEeCCCCCCCCcccccc--cCCeEEEEEccCCCEEEEEecC----
Q psy3710 140 NPKGLCVLCPNS-NNSLLAFPGRKS------GHVHLVDLADPERPPLDIAAH--EAPLSCIALNQTGTRLATASYK---- 206 (424)
Q Consensus 140 ~~~~~~~~~~~~-~~~~l~~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d---- 206 (424)
..+..+.|+| +++.|++ .+.+ ..|.+||+..+ . ...+..+ ...+..++|+|+|+.|+.++.+
T Consensus 188 --~~~~~~~~sp~dg~~l~~-~~~~~~~~~~~~l~~~d~~~~-~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 262 (396)
T 3c5m_A 188 --AWLGHPIYRPFDDSTVGF-CHEGPHDLVDARMWLVNEDGS-N-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQT 262 (396)
T ss_dssp --SCEEEEEEETTEEEEEEE-EECSCSSSCSCCCEEEETTSC-C-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTC
T ss_pred --cccccceECCCCCCEEEE-EecCCCCCCCceEEEEECCCC-c-eeEeeccCCCccccceEECCCCCEEEEEecCCCCc
Confidence 3467788999 7887776 3332 46888898754 2 2333333 2357889999999988877654
Q ss_pred -CcEEEEEECCCcceeeEEec-ceeeeeecC-CCCeEEEEee---------------cCCeEEEEeCCCCCCCCeeeccC
Q psy3710 207 -GTLIRVFDTGSGQKLNELRR-GLCVLCPNS-NNSLLAFPGR---------------KSGHVHLVDLADPERPPLDIAAH 268 (424)
Q Consensus 207 -~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~---------------~dg~i~i~d~~~~~~~~~~~~~~ 268 (424)
+. |++||+.+++....... ... ..++| ++..++++++ .+..|++||+.+++. ..+..+
T Consensus 263 ~~~-l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~ 338 (396)
T 3c5m_A 263 DRV-IYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA--QKLCKH 338 (396)
T ss_dssp CEE-EEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC--CEEEEC
T ss_pred cce-EEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce--EEccCC
Confidence 55 99999988865443322 233 78888 8887666432 347899999987653 233344
Q ss_pred CC-----------CeEEEEEcCCCCEEEEEeCC-Cc-EEEEEECCCCc
Q psy3710 269 EA-----------PLSCIALNQTGTRLATASYK-GT-LIRVFDTGSGQ 303 (424)
Q Consensus 269 ~~-----------~v~~~~~~~~~~~l~~~~~d-~~-~i~iwd~~~~~ 303 (424)
.. .+..++|+|||+.|+.++.+ +. .|.++++.+++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 339 STSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred CCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 43 25667899999988877653 33 03444444443
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-17 Score=147.72 Aligned_cols=276 Identities=13% Similarity=0.108 Sum_probs=187.1
Q ss_pred CCCCeeEeec-------CCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCC---CcCCCeEEEEECCC
Q psy3710 20 QDQGCFACGM-------EDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHP---KYPNNRVMIWDDLK 89 (424)
Q Consensus 20 ~~g~~la~g~-------~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~---~~~d~~i~iwd~~~ 89 (424)
++++++.+.. ++.|.+||..+++.......+..+ .+.++|++++++++...... ...++.|.+||..+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 3556655432 234999999888775444433333 89999999999888621000 00257899999999
Q ss_pred CcEEEEEeec-------CCeEEEEecCCceEEEe-----eccEEEEeecCCCceeEE-EeeCCCCCeeEEEeecCCC-Ce
Q psy3710 90 KQVVICLEFN-------APVKGVRLRRDKIVVVL-----EGLIKVYTFIQCPQQLHV-FETNPNPKGLCVLCPNSNN-SL 155 (424)
Q Consensus 90 ~~~~~~~~~~-------~~v~~~~~~~~~~~~~~-----~~~i~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~ 155 (424)
++.+.++... .....++++||+.++.. ++.|.+||+. +.+.+.. +.... ...+.+.|++ ..
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~-~~~~~~~~i~~~~----~~~v~~~p~~~~~ 165 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVA-KGDYVEDVTAAAG----CWSVIPQPNRPRS 165 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETT-TTEEEEEEGGGTT----EEEEEECTTSSSE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECC-CCcEEEEEecCCC----cceeEEcCCCCee
Confidence 9999888732 45678999999976654 4689999997 6666655 44322 2223455665 34
Q ss_pred EEEeeccCCeEEEEeCCCCCCCC------cccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCccee--eEEe--
Q psy3710 156 LAFPGRKSGHVHLVDLADPERPP------LDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL--NELR-- 225 (424)
Q Consensus 156 l~~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~--~~~~-- 225 (424)
+++ .+.||.+.+|++....+.. ..+..+..++ .+.+++++..++..+.++. +.++|+...... ..+.
T Consensus 166 ~~~-~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~-v~v~d~~~~~~~~~~~~~~~ 242 (361)
T 2oiz_A 166 FMT-ICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGN-VYSADFSGDEVKVDGPWSLL 242 (361)
T ss_dssp EEE-EETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSE-EEEEECSSSSCEEEEEEESC
T ss_pred EEE-ECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCe-EEEEEecCCCceeccccccc
Confidence 444 7888999888886532222 1122222222 3344677888888888898 999999755322 2221
Q ss_pred -----------cceeeeeecCCCCeEEEEee----------cCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEE
Q psy3710 226 -----------RGLCVLCPNSNNSLLAFPGR----------KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRL 284 (424)
Q Consensus 226 -----------~~~~~~~~~~~~~~~~~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 284 (424)
.+...++++|+++.++++.. ..+.|.+||+.+.+ .+..+..+. +.+++|+|||++|
T Consensus 243 ~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~-~v~~i~~~~--p~~ia~spdg~~l 319 (361)
T 2oiz_A 243 NDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ-RVARIPGRD--ALSMTIDQQRNLM 319 (361)
T ss_dssp CHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE-EEEEEECTT--CCEEEEETTTTEE
T ss_pred CccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc-EEEEEecCC--eeEEEECCCCCEE
Confidence 11223788999888887654 13589999999876 345555555 9999999999999
Q ss_pred EEEeCCCcEEEEEECCCC--ceeeeecc
Q psy3710 285 ATASYKGTLIRVFDTGSG--QKLNELRR 310 (424)
Q Consensus 285 ~~~~~d~~~i~iwd~~~~--~~~~~~~~ 310 (424)
++++. +. |.+||..++ +.+.++.+
T Consensus 320 ~v~n~-~~-v~v~D~~t~~l~~~~~i~~ 345 (361)
T 2oiz_A 320 LTLDG-GN-VNVYDISQPEPKLLRTIEG 345 (361)
T ss_dssp EEECS-SC-EEEEECSSSSCEEEEEETT
T ss_pred EEeCC-Ce-EEEEECCCCcceeeEEecc
Confidence 98887 88 999999999 99888754
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.7e-17 Score=149.89 Aligned_cols=309 Identities=13% Similarity=0.087 Sum_probs=218.1
Q ss_pred CCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECC--CCcEEEEE
Q psy3710 20 QDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL--KKQVVICL 96 (424)
Q Consensus 20 ~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~--~~~~~~~~ 96 (424)
|.+.++++...++ |.++|.++++.+..... ......+.++|+++++++++ .|+.|.+||+. +++.+.++
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~-------~dg~V~viD~~~~t~~~v~~i 236 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIG-------RDGKVNMIDLWMKEPTTVAEI 236 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEE-------TTSEEEEEETTSSSCCEEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEc-------CCCeEEEEECCCCCCcEeEEE
Confidence 3344555666556 99999999887655443 33456899999999998877 47899999996 88888888
Q ss_pred eecCCeEEEEec----CCceEEEe----eccEEEEeecCCCceeEEEeeCCC---------CCeeEEEeecCCCCeEEEe
Q psy3710 97 EFNAPVKGVRLR----RDKIVVVL----EGLIKVYTFIQCPQQLHVFETNPN---------PKGLCVLCPNSNNSLLAFP 159 (424)
Q Consensus 97 ~~~~~v~~~~~~----~~~~~~~~----~~~i~v~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~ 159 (424)
........++|+ ||+.+++. ++.+.++|.. +.+.+..+..... ...+..+..++++..+++.
T Consensus 237 ~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~-t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~ 315 (567)
T 1qks_A 237 KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE-TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 315 (567)
T ss_dssp ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT-TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred ecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC-CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence 866678899999 69866654 6899999986 7777776653210 1145667778887777665
Q ss_pred eccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEe-cCCcEEEEEECCCcceeeEEec-ce-----eee-
Q psy3710 160 GRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS-YKGTLIRVFDTGSGQKLNELRR-GL-----CVL- 231 (424)
Q Consensus 160 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~~i~iwd~~~~~~~~~~~~-~~-----~~~- 231 (424)
-..+|.|.++|....................+.|+|+|++++++. .++. |.++|+.+++.+..++. +. ...
T Consensus 316 ~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~-V~ViD~~t~kl~~~i~vgg~~Phpg~g~~ 394 (567)
T 1qks_A 316 VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK-LVVIDTKEGKLVAIEDTGGQTPHPGRGAN 394 (567)
T ss_dssp ETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSSBCCTTCEE
T ss_pred ecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCe-EEEEECCCCcEEEEEeccCcCCCCcccee
Confidence 778899999998764211111112344567889999999987766 4566 99999999988877765 21 122
Q ss_pred eecCCCCeEEEEee-cCCeEEEEeCCCCCC------CCeeeccCCCCeEEEEEcCCCCEEEEEeC-------CCcEEEEE
Q psy3710 232 CPNSNNSLLAFPGR-KSGHVHLVDLADPER------PPLDIAAHEAPLSCIALNQTGTRLATASY-------KGTLIRVF 297 (424)
Q Consensus 232 ~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~~i~iw 297 (424)
.++|++..+++++. .++.|.++|....+. .+..+......-..++.+|+++++.+... ... |.++
T Consensus 395 ~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~-v~v~ 473 (567)
T 1qks_A 395 FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGS-VAVF 473 (567)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTC-EEEE
T ss_pred eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCce-EEEE
Confidence 25777677766554 568999999987331 23344443333345788999999988763 346 9999
Q ss_pred ECCCC---------ceee-----------------eeccCCcEEEEEe-----CCCcEEEEEccccccccccc
Q psy3710 298 DTGSG---------QKLN-----------------ELRRDSSYLCVSS-----DHGTVHVFSVDEAQKINKQS 339 (424)
Q Consensus 298 d~~~~---------~~~~-----------------~~~~~~~~l~~~~-----~d~~i~iw~~~~~~~~~~~~ 339 (424)
|+.+. +.+. +|+++|+++..+. .++.|.|+|.++++....+.
T Consensus 474 d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 474 DIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp EGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 98876 2221 3678998877663 37999999999987655443
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-17 Score=150.71 Aligned_cols=212 Identities=13% Similarity=0.076 Sum_probs=148.1
Q ss_pred CeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe--eccEEEEeecCCC---------ceeEEE---eeCCCCCeeE
Q psy3710 80 NRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCP---------QQLHVF---ETNPNPKGLC 145 (424)
Q Consensus 80 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~---------~~~~~~---~~~~~~~~~~ 145 (424)
+.+++|+... . .....+..+++++++.+++. ...+++|+..... ..+... ........+.
T Consensus 23 ~~vri~~~~~-~-----~~~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (434)
T 2oit_A 23 KKVRIFDSPE-E-----LPKERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIH 96 (434)
T ss_dssp CEEECSCCCS-S-----CCCSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEE
T ss_pred eeEEecCCcc-c-----cCCCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCccc
Confidence 4677776421 1 12345788899988766554 2348888753110 011100 0011234588
Q ss_pred EEeecCCCCeEEE---eeccCCeEEEEeCCCC-----C--CC---CcccccccCCeEEEEEccC-CCEEEEEecCCcEEE
Q psy3710 146 VLCPNSNNSLLAF---PGRKSGHVHLVDLADP-----E--RP---PLDIAAHEAPLSCIALNQT-GTRLATASYKGTLIR 211 (424)
Q Consensus 146 ~~~~~~~~~~l~~---~~~~dg~i~i~d~~~~-----~--~~---~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~~i~ 211 (424)
+++|+|++++|++ +|+.|+.|++||+.+. . ++ ...+.+|...|.+++|+|+ +.+|++++.|+. |+
T Consensus 97 ~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v~ 175 (434)
T 2oit_A 97 HLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-IA 175 (434)
T ss_dssp EEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-EE
T ss_pred EEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-EE
Confidence 9999999999994 4899999999998653 1 11 3455679999999999998 789999999999 99
Q ss_pred EEECCCcceeeEEec---ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec-------cCCCCeEEEEEcCCC
Q psy3710 212 VFDTGSGQKLNELRR---GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA-------AHEAPLSCIALNQTG 281 (424)
Q Consensus 212 iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~v~~~~~~~~~ 281 (424)
+||++++........ .+..++|+|++..++. |+.||.|++||++ +. ....+. .|...|.+++|++++
T Consensus 176 iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~las-gs~dg~v~iwd~~-~~-~~~~~~~~~~~~~~~~~~v~~v~w~~~~ 252 (434)
T 2oit_A 176 VLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAV-GKQNGTVVQYLPT-LQ-EKKVIPCPPFYESDHPVRVLDVLWIGTY 252 (434)
T ss_dssp EEEESSSEEEEEEECGGGCEEEEEECTTSSCEEE-EETTSCEEEECTT-CC-EEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred EEEcCCCcceeeccCCCCceeEEEEcCCCCEEEE-EcCCCcEEEEccC-Cc-ccccccCCcccCCCCceeEEEEEEecCc
Confidence 999998866655443 4788999999877765 8899999999998 22 122222 233489999999998
Q ss_pred CEEEEEe-CCC------cEEEEEECCCC
Q psy3710 282 TRLATAS-YKG------TLIRVFDTGSG 302 (424)
Q Consensus 282 ~~l~~~~-~d~------~~i~iwd~~~~ 302 (424)
.++++.+ .+| . +++|++...
T Consensus 253 ~~l~~~~~~dg~~~~~~~-v~i~~l~~~ 279 (434)
T 2oit_A 253 VFAIVYAAADGTLETSPD-VVMALLPKK 279 (434)
T ss_dssp EEEEEEEETTCCSSSCCE-EEEEECCCT
T ss_pred eEEEEEccCCCccCCCCc-eEEEEeccC
Confidence 8876543 332 3 889999865
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-17 Score=159.94 Aligned_cols=288 Identities=12% Similarity=0.041 Sum_probs=182.5
Q ss_pred cccccCCceEEEEECCCCCeeEee--cCCe-EEEEeCCcCcccccccccCCCee---------eEEEe--ccCce-EEEE
Q psy3710 5 TSSTYKNGLLYAGFNQDQGCFACG--MEDG-FRIYNCDPLKEKERQDFTDGGLG---------HVEML--FRCNY-LALV 69 (424)
Q Consensus 5 ~l~~h~~~V~~~~~s~~g~~la~g--~~~~-i~iw~~~~~~~~~~~~~~~~~i~---------~~~~~--~~~~~-l~~~ 69 (424)
.+.+|...|..++|++++-+++.+ ..++ ..||....+........+...+. ...|+ |+++. ++++
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 367899999999999887666766 4455 88888543333322333333444 45565 99999 7776
Q ss_pred eCCcCCCcCCCeEEEEECC--C-CcEEEEEe-----ecCCeEEEEecCCceEEEe---e----------ccEEEEeecCC
Q psy3710 70 GGGTHPKYPNNRVMIWDDL--K-KQVVICLE-----FNAPVKGVRLRRDKIVVVL---E----------GLIKVYTFIQC 128 (424)
Q Consensus 70 ~~~~~~~~~d~~i~iwd~~--~-~~~~~~~~-----~~~~v~~~~~~~~~~~~~~---~----------~~i~v~~~~~~ 128 (424)
+.. +..|.++++. . ++...... +...+..++|+||+..+++ + ..|++|++...
T Consensus 98 ~~~------~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 171 (662)
T 3azo_A 98 HFG------DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGS 171 (662)
T ss_dssp BTT------TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTST
T ss_pred ECC------CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCC
Confidence 632 5678888875 3 44333222 2456789999999977764 4 47999998621
Q ss_pred C----ceeEEEe-eCCCCCeeEEEeecCCCCeEEEeeccC--------CeEEEEeCCC-CC--CCCcccccccCCeEEEE
Q psy3710 129 P----QQLHVFE-TNPNPKGLCVLCPNSNNSLLAFPGRKS--------GHVHLVDLAD-PE--RPPLDIAAHEAPLSCIA 192 (424)
Q Consensus 129 ~----~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~d--------g~i~i~d~~~-~~--~~~~~~~~~~~~v~~~~ 192 (424)
. .....+. .+ ...+..+.|+|||+.|++ ++.+ ..|++||+.. +. ........|...+..++
T Consensus 172 ~~~~~~~~~~l~~~~--~~~~~~~~~SpDG~~la~-~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~ 248 (662)
T 3azo_A 172 AAADRSAVRELSDDA--HRFVTGPRLSPDGRQAVW-LAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAE 248 (662)
T ss_dssp TTTCGGGSEESSCSC--SSEECCCEECTTSSEEEE-EEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEE
T ss_pred ccccCCceeEEEecC--CCcccCceECCCCCEEEE-EECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceE
Confidence 0 2333333 22 234667789999999997 4433 4799999983 31 22223344578899999
Q ss_pred EccCCCEEEEEecCC--cEEEEEECCCcceeeEEecc-----------eeeeeecCCCCeEEEEeecCCeEEEE--eCCC
Q psy3710 193 LNQTGTRLATASYKG--TLIRVFDTGSGQKLNELRRG-----------LCVLCPNSNNSLLAFPGRKSGHVHLV--DLAD 257 (424)
Q Consensus 193 ~~~~~~~l~~~~~d~--~~i~iwd~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~dg~i~i~--d~~~ 257 (424)
|+|||++++++..++ . |.+||..+++.......+ ...+++++++.. ++++.. +.+++| |+.+
T Consensus 249 ~spdg~l~~~~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~-~~~~~~-~~~~l~~~d~~~ 325 (662)
T 3azo_A 249 WAPDGSLIVATDRTGWWN-LHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLI-AVVHGK-GAAVLGILDPES 325 (662)
T ss_dssp ECTTSCEEEEECTTSSCE-EEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCE-EEEEBS-SSCEEEEEETTT
T ss_pred ECCCCeEEEEECCCCCeE-EEEEECCCCceeecccccccccCccccccCceEeEeCCCEE-EEEEEc-CccEEEEEECCC
Confidence 999999777887777 5 777777666544332221 234566666664 455666 888888 5444
Q ss_pred CCCCCeeeccCCCCeEEE-EEcCCCCEEEEEeCCCc-EEEEEECCCCceee
Q psy3710 258 PERPPLDIAAHEAPLSCI-ALNQTGTRLATASYKGT-LIRVFDTGSGQKLN 306 (424)
Q Consensus 258 ~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~d~~-~i~iwd~~~~~~~~ 306 (424)
++ ...+..|...+..+ +++++.-++++++.+.. .|.++|+.+++...
T Consensus 326 ~~--~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 326 GE--LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRART 374 (662)
T ss_dssp TE--EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred Cc--EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence 33 45566777777777 55444334444455533 16666777776543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=4.3e-16 Score=133.41 Aligned_cols=240 Identities=12% Similarity=0.120 Sum_probs=164.3
Q ss_pred cccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCccccccc------ccCCCeeeEEEe-ccCceEEEEeCCcCCCcC
Q psy3710 7 STYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQD------FTDGGLGHVEML-FRCNYLALVGGGTHPKYP 78 (424)
Q Consensus 7 ~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~------~~~~~i~~~~~~-~~~~~l~~~~~~~~~~~~ 78 (424)
.+|-..+.+++++|+|+++++...++ |.+||.+ ++...... .+......+++. +++..+ ++... .
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~-v~~~~-----~ 98 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDII-VTERS-----P 98 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEE-EEECG-----G
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEE-EEcCC-----C
Confidence 45667899999999999888876655 9999976 33322221 123456778885 445444 44421 1
Q ss_pred CCeEEEEECCCCcEEEEEe--ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCC
Q psy3710 79 NNRVMIWDDLKKQVVICLE--FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNN 153 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (424)
++.|.+|| .+++.+..+. ....+.++++++++.++++ ++.|.+|+. .++.+..+...........+++++++
T Consensus 99 ~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~--~g~~~~~~~~~~~~~~p~~i~~~~~g 175 (286)
T 1q7f_A 99 THQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ--NGNVLHKFGCSKHLEFPNGVVVNDKQ 175 (286)
T ss_dssp GCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT--TSCEEEEEECTTTCSSEEEEEECSSS
T ss_pred CCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC--CCCEEEEeCCCCccCCcEEEEECCCC
Confidence 58999999 6788777765 2357899999999876665 568999995 45555555433333446788999999
Q ss_pred CeEEEeeccCCeEEEEeCCCCCCCCcccccc--cCCeEEEEEccCCCEEEEEecCC-cEEEEEECCCcceeeEEecceee
Q psy3710 154 SLLAFPGRKSGHVHLVDLADPERPPLDIAAH--EAPLSCIALNQTGTRLATASYKG-TLIRVFDTGSGQKLNELRRGLCV 230 (424)
Q Consensus 154 ~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~-~~i~iwd~~~~~~~~~~~~~~~~ 230 (424)
+++++ ...++.|++||... ..+..+..+ ...+..++++++|+++++...++ . |.+||. +++.+..+..+
T Consensus 176 ~l~v~-~~~~~~i~~~~~~g--~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~-i~~~~~-~g~~~~~~~~~--- 247 (286)
T 1q7f_A 176 EIFIS-DNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN-LTIFTQ-DGQLISALESK--- 247 (286)
T ss_dssp EEEEE-EGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE-EEEECT-TSCEEEEEEES---
T ss_pred CEEEE-ECCCCEEEEEcCCC--CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE-EEEECC-CCCEEEEEccc---
Confidence 86665 77899999999854 334444332 35789999999998888887775 8 999995 45544444311
Q ss_pred eeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCC
Q psy3710 231 LCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG 302 (424)
Q Consensus 231 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~ 302 (424)
.....+.+++++|+|+++++ +.++. |++|++...
T Consensus 248 ------------------------------------~~~~~~~~i~~~~~g~l~vs-~~~~~-v~v~~~~~~ 281 (286)
T 1q7f_A 248 ------------------------------------VKHAQCFDVALMDDGSVVLA-SKDYR-LYIYRYVQL 281 (286)
T ss_dssp ------------------------------------SCCSCEEEEEEETTTEEEEE-ETTTE-EEEEECSCC
T ss_pred ------------------------------------CCCCcceeEEECCCCcEEEE-CCCCe-EEEEEcccc
Confidence 11224567888888876655 56777 888877554
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-15 Score=138.24 Aligned_cols=286 Identities=10% Similarity=0.044 Sum_probs=199.9
Q ss_pred CceEEEEECCCCCeeEeecCCe-EEEEeCC--cCcccccccccCCCeeeEEEe----ccCceEEEEeCCcCCCcCCCeEE
Q psy3710 11 NGLLYAGFNQDQGCFACGMEDG-FRIYNCD--PLKEKERQDFTDGGLGHVEML----FRCNYLALVGGGTHPKYPNNRVM 83 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la~g~~~~-i~iw~~~--~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~~~~~~~~~~d~~i~ 83 (424)
..+..++|||||+++.+++.++ |.+||+. +.+.+..... ......+.++ |++++++++.. .++++.
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~------~~~~v~ 269 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAY------WPPQYV 269 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEE------ETTEEE
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCceeEEccccCCCCCEEEEEEc------cCCeEE
Confidence 3567899999999999888777 9999985 6555443333 2345678999 69999988874 369999
Q ss_pred EEECCCCcEEEEEeec------------CCeEEEEecCCceEE-Ee---eccEEEEeecCCCceeEEEeeCCCCCeeEEE
Q psy3710 84 IWDDLKKQVVICLEFN------------APVKGVRLRRDKIVV-VL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVL 147 (424)
Q Consensus 84 iwd~~~~~~~~~~~~~------------~~v~~~~~~~~~~~~-~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (424)
++|..+.+.+..+... ..+..+..++++..+ +. .|.|.++|.. ....+....... ......+
T Consensus 270 ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~-~~~~~~v~~i~~-~~~~~d~ 347 (567)
T 1qks_A 270 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT-DLNNLKTTEISA-ERFLHDG 347 (567)
T ss_dssp EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT-CSSEEEEEEEEC-CSSEEEE
T ss_pred EEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecC-CCccceeeeeec-cccccCc
Confidence 9999999999887621 257788888876433 33 6899999986 332222211111 1235567
Q ss_pred eecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccc-----cccCCeEEEEEccCCCEEE-EEe-cCCcEEEEEECCC---
Q psy3710 148 CPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA-----AHEAPLSCIALNQTGTRLA-TAS-YKGTLIRVFDTGS--- 217 (424)
Q Consensus 148 ~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~-~~~-~d~~~i~iwd~~~--- 217 (424)
.|+|++++++++...++.|.++|+.++ +....+. .|.+.-..+ ++|++..+. +.. .++. |.++|..+
T Consensus 348 ~~~pdgr~~~va~~~sn~V~ViD~~t~-kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~-Vsvid~~~~~~ 424 (567)
T 1qks_A 348 GLDGSHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDS-VALIGTDPEGH 424 (567)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSE-EEEEECCTTTC
T ss_pred eECCCCCEEEEEeCCCCeEEEEECCCC-cEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCe-EEEecCCCCCC
Confidence 899999999886777899999999986 4333332 233222222 578755444 443 4578 99999987
Q ss_pred ----cceeeEEecc---eeeeeecCCCCeEEEEeec------CCeEEEEeCCCC-----CCCCeeec--------cCCCC
Q psy3710 218 ----GQKLNELRRG---LCVLCPNSNNSLLAFPGRK------SGHVHLVDLADP-----ERPPLDIA--------AHEAP 271 (424)
Q Consensus 218 ----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~------dg~i~i~d~~~~-----~~~~~~~~--------~~~~~ 271 (424)
.+.+.+++.. ...+..+|+++.+.+.... .++|.++|+.+. ......+. .....
T Consensus 425 ~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 504 (567)
T 1qks_A 425 PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPR 504 (567)
T ss_dssp TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCE
T ss_pred ccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcc
Confidence 5677777643 2446789999998885421 469999999876 32212221 12457
Q ss_pred eEEEEEcCCCCEEEEEeC-----CCcEEEEEECCCCceeeeec
Q psy3710 272 LSCIALNQTGTRLATASY-----KGTLIRVFDTGSGQKLNELR 309 (424)
Q Consensus 272 v~~~~~~~~~~~l~~~~~-----d~~~i~iwd~~~~~~~~~~~ 309 (424)
+..+.|+|+|+++..+.. ++. |.++|.++++.+.++.
T Consensus 505 ~~~~~~~~~G~~~~~s~~~~~~~~~~-i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 505 VVQGEFNKDGTEVWFSVWNGKDQESA-LVVVDDKTLELKHVIK 546 (567)
T ss_dssp EEEEEECTTSSEEEEEEECCTTSCCE-EEEEETTTTEEEEEEC
T ss_pred eEeeeECCCCCEEEEEeecCCCCCCc-EEEEECCCceEEEEeC
Confidence 899999999998887743 677 9999999999888765
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-16 Score=151.51 Aligned_cols=227 Identities=8% Similarity=-0.005 Sum_probs=157.3
Q ss_pred ecCCeEEEEecCCceEEEe-----eccEEEEeecCCCceeEEEeeCCCCCe-------eEEEee--cCCCCe-EEEeecc
Q psy3710 98 FNAPVKGVRLRRDKIVVVL-----EGLIKVYTFIQCPQQLHVFETNPNPKG-------LCVLCP--NSNNSL-LAFPGRK 162 (424)
Q Consensus 98 ~~~~v~~~~~~~~~~~~~~-----~~~i~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--~~~~~~-l~~~~~~ 162 (424)
+...+..++++++..+++. ++...+|... .+.....+..+..... -..+.+ |||++. |+++...
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~ 100 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRR-ADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG 100 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEEC-TTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEEC-CCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECC
Confidence 5677899999998877765 4578899874 3344444544432211 003333 499999 8874555
Q ss_pred CCeEEEEeCC--C-CCCCCccccc-----ccCCeEEEEEccCCCEEEEEecC----------CcEEEEEECCC------c
Q psy3710 163 SGHVHLVDLA--D-PERPPLDIAA-----HEAPLSCIALNQTGTRLATASYK----------GTLIRVFDTGS------G 218 (424)
Q Consensus 163 dg~i~i~d~~--~-~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------~~~i~iwd~~~------~ 218 (424)
+..|.++++. . + . ...+.. |...+..++|+|||+.|++++.+ .. |++||+.+ +
T Consensus 101 ~~~l~~~~~~~~g~~-~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 101 DQRLYAFEPDAPGGA-V-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF-LAAVPLDGSAAADRS 177 (662)
T ss_dssp TCCEEEECTTSTTCC-C-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE-EEEEETTSTTTTCGG
T ss_pred CCeEEEEcCCCCCCC-C-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE-EEEEECCCCccccCC
Confidence 6778888876 2 2 2 334444 66788999999999999998877 46 99999988 5
Q ss_pred ceeeEE-e--cceeeeeecCCCCeEEEEeecC-------CeEEEEeCC-CCC--CCCeeeccCCCCeEEEEEcCCCCEEE
Q psy3710 219 QKLNEL-R--RGLCVLCPNSNNSLLAFPGRKS-------GHVHLVDLA-DPE--RPPLDIAAHEAPLSCIALNQTGTRLA 285 (424)
Q Consensus 219 ~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~d-------g~i~i~d~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~ 285 (424)
+..... . ......+++|+|+.++++.... ..|++||+. ++. ........|...+..++|+|||++++
T Consensus 178 ~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~ 257 (662)
T 3azo_A 178 AVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIV 257 (662)
T ss_dssp GSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEE
T ss_pred ceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEE
Confidence 543322 2 1245678999999998865443 489999998 441 23333445678899999999999888
Q ss_pred EEeCCC--cEEEEEECCCCceee--------------------eeccCCcEEEEEeCCCcEEEEEcc
Q psy3710 286 TASYKG--TLIRVFDTGSGQKLN--------------------ELRRDSSYLCVSSDHGTVHVFSVD 330 (424)
Q Consensus 286 ~~~~d~--~~i~iwd~~~~~~~~--------------------~~~~~~~~l~~~~~d~~i~iw~~~ 330 (424)
+++.++ . |.+||+.+++... .++++++++++++. +.++||.+.
T Consensus 258 ~~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 258 ATDRTGWWN-LHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp EECTTSSCE-EEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred EECCCCCeE-EEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 888887 5 7777776665332 13368889999988 999999443
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-15 Score=132.89 Aligned_cols=258 Identities=9% Similarity=0.024 Sum_probs=177.2
Q ss_pred CCceEEEEECCCCCeeEeecCCe-EEEEeCCcCccccccccc-CCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEEC
Q psy3710 10 KNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFT-DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDD 87 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~ 87 (424)
-+.+.+++++|+|+++++...+. +.+++.+.... ...+ .+++ .+++|.+||.
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----------------------~~~~i~~~d~ 76 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFV---YQQRGLGPI-----------------------EEDTILVIDP 76 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSC---BSCGGGCSC-----------------------CSCCEEEECT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCccee---ecccccccc-----------------------cCCcEEEEEC
Confidence 46799999999999998887775 54443332211 1111 1111 2589999999
Q ss_pred CCCcEEEEEe--ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEee-------CCCCCeeEEEeecC-CCC
Q psy3710 88 LKKQVVICLE--FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFET-------NPNPKGLCVLCPNS-NNS 154 (424)
Q Consensus 88 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~ 154 (424)
.+++.+..+. +-..+..+++++++.++++ ++.|++|+.......+..+.. .........++++| ++.
T Consensus 77 ~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~ 156 (329)
T 3fvz_A 77 NNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA 156 (329)
T ss_dssp TTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC
T ss_pred CCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe
Confidence 8899877665 2357899999999977766 578999997422124555432 11223467889999 677
Q ss_pred eEEEeec-cCCeEEEEeCCCCCCCCccccc----------ccCCeEEEEEccC-CCEEEEEecCCcEEEEEECCCcceee
Q psy3710 155 LLAFPGR-KSGHVHLVDLADPERPPLDIAA----------HEAPLSCIALNQT-GTRLATASYKGTLIRVFDTGSGQKLN 222 (424)
Q Consensus 155 ~l~~~~~-~dg~i~i~d~~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd~~~~~~~~ 222 (424)
++++ .+ .++.|++|+... ..+..+.. +-.....++++|+ +.++++...++. |++||..+++.+.
T Consensus 157 lyv~-d~~~~~~I~~~~~~g--~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~-I~~~~~~~G~~~~ 232 (329)
T 3fvz_A 157 VFVS-DGYCNSRIVQFSPSG--KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR-IQCFKTDTKEFVR 232 (329)
T ss_dssp EEEE-ECSSCCEEEEECTTS--CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE-EEEEETTTCCEEE
T ss_pred EEEE-eCCCCCeEEEEcCCC--CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE-EEEEECCCCcEEE
Confidence 6665 64 689999999543 44444432 2234889999998 666777777888 9999999888888
Q ss_pred EEec-----ceeeeeecCCCCeEEEE-------eecCCeEEEEeCCCCCCCCeee---ccCCCCeEEEEEcCCCCEEEEE
Q psy3710 223 ELRR-----GLCVLCPNSNNSLLAFP-------GRKSGHVHLVDLADPERPPLDI---AAHEAPLSCIALNQTGTRLATA 287 (424)
Q Consensus 223 ~~~~-----~~~~~~~~~~~~~~~~~-------~~~dg~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~ 287 (424)
.+.. ....++++| ..++.+ ...+..|++||..+++. ...+ ..+...+..++++|+|.++++.
T Consensus 233 ~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~~p~~ia~~~dG~lyvad 309 (329)
T 3fvz_A 233 EIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEI-IDVFKPVRKHFDMPHDIVASEDGTVYIGD 309 (329)
T ss_dssp EECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCE-EEEECCSSSCCSSEEEEEECTTSEEEEEE
T ss_pred EEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeE-EEEEcCCCCccCCeeEEEECCCCCEEEEE
Confidence 7743 255667777 233222 33456899999988763 3333 3566779999999999888888
Q ss_pred eCCCcEEEEEECCC
Q psy3710 288 SYKGTLIRVFDTGS 301 (424)
Q Consensus 288 ~~d~~~i~iwd~~~ 301 (424)
..++. |++|++..
T Consensus 310 ~~~~~-I~~~~~~~ 322 (329)
T 3fvz_A 310 AHTNT-VWKFTLTE 322 (329)
T ss_dssp SSSCC-EEEEEEEE
T ss_pred CCCCE-EEEEeCCc
Confidence 88888 99998753
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-15 Score=131.55 Aligned_cols=256 Identities=7% Similarity=0.040 Sum_probs=177.6
Q ss_pred Ce-EEEEeCCcCcccccccc-----c-CCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeE
Q psy3710 31 DG-FRIYNCDPLKEKERQDF-----T-DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVK 103 (424)
Q Consensus 31 ~~-i~iw~~~~~~~~~~~~~-----~-~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~ 103 (424)
++ |.+||.++++....... . ......+.+ +++.+..+... ++.|.+||..+++.+.++.....+.
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~--~~~~lyv~~~~------~~~v~viD~~t~~~~~~i~~~~~p~ 87 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVI--RDGIGWIVVNN------SHVIFAIDINTFKEVGRITGFTSPR 87 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEE--ETTEEEEEEGG------GTEEEEEETTTCCEEEEEECCSSEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEE--ECCEEEEEEcC------CCEEEEEECcccEEEEEcCCCCCCc
Confidence 44 99999988776432210 1 122334444 45555555532 5899999999999999988677899
Q ss_pred EEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCC------CCCeeEEEeecCCCCeEEEeec-cCCeEEEEeCCC
Q psy3710 104 GVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNP------NPKGLCVLCPNSNNSLLAFPGR-KSGHVHLVDLAD 173 (424)
Q Consensus 104 ~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~-~dg~i~i~d~~~ 173 (424)
.+++++++.+.++ ++.|.+||.. +.+....+.... .+.. +++ ++..+.++.. .++.|.++|+.+
T Consensus 88 ~i~~~~~g~lyv~~~~~~~v~~iD~~-t~~~~~~i~~g~~~~~~~~p~~---i~~--~~~~lyv~~~~~~~~v~viD~~t 161 (328)
T 3dsm_A 88 YIHFLSDEKAYVTQIWDYRIFIINPK-TYEITGYIECPDMDMESGSTEQ---MVQ--YGKYVYVNCWSYQNRILKIDTET 161 (328)
T ss_dssp EEEEEETTEEEEEEBSCSEEEEEETT-TTEEEEEEECTTCCTTTCBCCC---EEE--ETTEEEEEECTTCCEEEEEETTT
T ss_pred EEEEeCCCeEEEEECCCCeEEEEECC-CCeEEEEEEcCCccccCCCcce---EEE--ECCEEEEEcCCCCCEEEEEECCC
Confidence 9999888865555 6899999986 667666666544 3333 344 3445555244 488999999998
Q ss_pred CCCCCcccccccCCeEEEEEccCCCEEEEEecC----------CcEEEEEECCCcceeeEEec----ceeeeeecCCCCe
Q psy3710 174 PERPPLDIAAHEAPLSCIALNQTGTRLATASYK----------GTLIRVFDTGSGQKLNELRR----GLCVLCPNSNNSL 239 (424)
Q Consensus 174 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~ 239 (424)
+ +....+.. ......++++|+|++++++..+ +. |.++|..+++....+.. ....++++|+++.
T Consensus 162 ~-~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~-v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~ 238 (328)
T 3dsm_A 162 D-KVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS-LYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDT 238 (328)
T ss_dssp T-EEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCE-EEEEETTTTEEEEEEECCTTCCCEEEEECTTSCE
T ss_pred C-eEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCce-EEEEECCCCeEEEEEecCCCCCceeEEEecCCCE
Confidence 6 44444433 2345788999999877776654 67 99999999988777653 3678999999998
Q ss_pred EEEEeecCCeEEEEeCCCCCCCCee-eccCCCCeEEEEEcCC-CCEEEEE----eCCCcEEEEEECCCCceeeee
Q psy3710 240 LAFPGRKSGHVHLVDLADPERPPLD-IAAHEAPLSCIALNQT-GTRLATA----SYKGTLIRVFDTGSGQKLNEL 308 (424)
Q Consensus 240 ~~~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~-~~~l~~~----~~d~~~i~iwd~~~~~~~~~~ 308 (424)
++++.. .|.+||..+++..... +..+......++++|+ ++.+++. ..++. |.+||.. ++.+.++
T Consensus 239 lyv~~~---~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~-V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 239 LYWINN---DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGI-VYRYSPQ-GKLIDEF 308 (328)
T ss_dssp EEEESS---SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEE-EEEECTT-CCEEEEE
T ss_pred EEEEcc---EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCE-EEEECCC-CCEEEEE
Confidence 887443 8999999887643222 2222467899999995 5555554 45677 9999987 7776655
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-15 Score=134.82 Aligned_cols=258 Identities=11% Similarity=0.064 Sum_probs=168.8
Q ss_pred CCceEEEEECCCCCeeEeec---------CCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCC
Q psy3710 10 KNGLLYAGFNQDQGCFACGM---------EDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPN 79 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~---------~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d 79 (424)
-..+..+++ ||++++... .++ |.+|++++++.... ..+..+.|+|+++.+++++..... ..
T Consensus 14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~--~~ 84 (347)
T 2gop_A 14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-----ENATMPRISPDGKKIAFMRANEEK--KV 84 (347)
T ss_dssp SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-----ESCEEEEECTTSSEEEEEEEETTT--TE
T ss_pred eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-----ccCCCeEECCCCCEEEEEEeccCC--Cc
Confidence 346778888 999888542 123 99999988765332 457789999999999988742100 02
Q ss_pred CeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe---e---------------------------ccEEEEeecCCC
Q psy3710 80 NRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL---E---------------------------GLIKVYTFIQCP 129 (424)
Q Consensus 80 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~---------------------------~~i~v~~~~~~~ 129 (424)
..|.+|++.+++......... +..++|+||+..++. + ..|.+|++. ++
T Consensus 85 ~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~-~~ 162 (347)
T 2gop_A 85 SEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE-SE 162 (347)
T ss_dssp EEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT-TT
T ss_pred ceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC-CC
Confidence 358888998887766655555 999999999966654 2 468888885 55
Q ss_pred ceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccC------C-eEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEE
Q psy3710 130 QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKS------G-HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLAT 202 (424)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d------g-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 202 (424)
+.+..+.. . .+..+.|+|++ ++++ +..+ . ...+|.+++ .....+..+ ..+..+ +|+|+.|+.
T Consensus 163 ~~~~~l~~-~---~~~~~~~spdg-~~~~-~~~~~~~~~~~~~~~l~~~d~--~~~~~l~~~-~~~~~~--spdg~~l~~ 231 (347)
T 2gop_A 163 EVIEEFEK-P---RFSSGIWHRDK-IVVN-VPHREIIPQYFKFWDIYIWED--GKEEKMFEK-VSFYAV--DSDGERILL 231 (347)
T ss_dssp EEEEEEEE-E---TTCEEEEETTE-EEEE-EECCCSSCCSSCCEEEEEEET--TEEEEEEEE-ESEEEE--EECSSCEEE
T ss_pred eEEeeecC-C---CcccccCCCCe-EEEE-EecccccccccccccEEEeCC--CceEEeccC-cceeeE--CCCCCEEEE
Confidence 54344443 2 35677899999 6655 5443 2 334444443 233444444 555554 999999888
Q ss_pred EecC--------CcEEEEEECCCcceeeEEec---ceee-eeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCC
Q psy3710 203 ASYK--------GTLIRVFDTGSGQKLNELRR---GLCV-LCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEA 270 (424)
Q Consensus 203 ~~~d--------~~~i~iwd~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 270 (424)
++.+ .. |.+|| +++....... .+.. +.++ ++ ++++++.++.+++| +.+++ ...+..+..
T Consensus 232 ~~~~~~~~~~~~~~-l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g~--~~~~~~~~~ 302 (347)
T 2gop_A 232 YGKPEKKYMSEHNK-LYIYD--GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDGE--IKPIAKGRH 302 (347)
T ss_dssp EECCSSSCCCSSCE-EEEEC--SSCEEESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESSS--EEEEECSSS
T ss_pred EEccccCCccccce-EEEEC--CCceEeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCCc--eEEEecCCC
Confidence 7754 35 88888 5543332222 2443 6677 65 77778999999999 87432 233345577
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 271 PLSCIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 271 ~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
.|.+++|+| .++++++.++....+|.+.
T Consensus 303 ~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 303 WIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred eEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 899999999 6777777776512666665
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.3e-16 Score=135.02 Aligned_cols=228 Identities=13% Similarity=0.101 Sum_probs=159.3
Q ss_pred CeeEEEeecCCCCeEEEeeccC------------------------CeEEEEeCCCCCCCCcccc-cccCCeEEEEEccC
Q psy3710 142 KGLCVLCPNSNNSLLAFPGRKS------------------------GHVHLVDLADPERPPLDIA-AHEAPLSCIALNQT 196 (424)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~d------------------------g~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~ 196 (424)
..+..++++|+|+++++ ...+ +.|.+||..++ +....+. .+-.....++++|+
T Consensus 24 ~~v~~va~d~~G~l~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIF-HRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA-EILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp SCEEEEEECTTCCEEEE-ECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC-CEEEEECTTTCSSEEEEEECTT
T ss_pred CCceEEEECCCCCEEEE-eCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC-eEEeccCCCccCCceEEEECCC
Confidence 34778899999988876 6555 47999999875 3333332 34457899999999
Q ss_pred CCEEEEEecCCcEEEEEECCCcc-eeeEEec------------ceeeeeecCCCCeEEEEee-cCCeEEEEeCCCCCCCC
Q psy3710 197 GTRLATASYKGTLIRVFDTGSGQ-KLNELRR------------GLCVLCPNSNNSLLAFPGR-KSGHVHLVDLADPERPP 262 (424)
Q Consensus 197 ~~~l~~~~~d~~~i~iwd~~~~~-~~~~~~~------------~~~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~~ 262 (424)
|+++++...++. |+.||..... .+..+.. ....++++|++..++++.+ .++.|++||.. +. ..
T Consensus 102 g~l~v~d~~~~~-v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~-~~ 178 (329)
T 3fvz_A 102 GNYWVTDVALHQ-VFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GK-FV 178 (329)
T ss_dssp SCEEEEETTTTE-EEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SC-EE
T ss_pred CCEEEEECCCCE-EEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CC-EE
Confidence 998888888888 9999986542 4555521 2567899996666666565 69999999943 32 22
Q ss_pred eeecc----------CCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEECCCCceeeeec--------------cCCcEEEE
Q psy3710 263 LDIAA----------HEAPLSCIALNQT-GTRLATASYKGTLIRVFDTGSGQKLNELR--------------RDSSYLCV 317 (424)
Q Consensus 263 ~~~~~----------~~~~v~~~~~~~~-~~~l~~~~~d~~~i~iwd~~~~~~~~~~~--------------~~~~~l~~ 317 (424)
..+.. +-.....++++|+ +.++++...++. |++|+..+++.+..+. | +..+++
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~-I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~ 256 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR-IQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAV 256 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE-EEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE-EEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEe
Confidence 33321 2234899999998 677777777888 9999999888877652 3 222222
Q ss_pred E-------eCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEE
Q psy3710 318 S-------SDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYK 390 (424)
Q Consensus 318 ~-------~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~ 390 (424)
. ..+..|++|+..+++.+...... ..+......++++|+|+.+++...++.|++
T Consensus 257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~-------------------~~~~~~p~~ia~~~dG~lyvad~~~~~I~~ 317 (329)
T 3fvz_A 257 NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV-------------------RKHFDMPHDIVASEDGTVYIGDAHTNTVWK 317 (329)
T ss_dssp ECCCCTTCSCCCCEEEEETTTCCEEEEECCS-------------------SSCCSSEEEEEECTTSEEEEEESSSCCEEE
T ss_pred CCCEEeccCCCcEEEEEEcCCCeEEEEEcCC-------------------CCccCCeeEEEECCCCCEEEEECCCCEEEE
Confidence 2 33458999999888765442210 012234568999999977777778999999
Q ss_pred EEecC
Q psy3710 391 FMFNS 395 (424)
Q Consensus 391 ~~~~~ 395 (424)
|++..
T Consensus 318 ~~~~~ 322 (329)
T 3fvz_A 318 FTLTE 322 (329)
T ss_dssp EEEEE
T ss_pred EeCCc
Confidence 99863
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.2e-15 Score=130.18 Aligned_cols=263 Identities=12% Similarity=0.024 Sum_probs=171.5
Q ss_pred CceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC
Q psy3710 11 NGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK 89 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~ 89 (424)
..|.+++|++++..++....++ ++.|. .+.......+......+.|.++++.+++.. .++.|.+||.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~-------~~~~i~~~d~~~ 75 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEISKKGLQLEGLNFDRQGQLFLLDV-------FEGNIFKINPET 75 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEEESSCCCEEEEEECTTSCEEEEET-------TTCEEEEECTTT
T ss_pred cccceeeecCCccceeEEeecccCcccc---cceeEEEeccCccccCcEECCCCCEEEEEC-------CCCEEEEEeCCC
Confidence 4578899999988777655455 88883 222222333345567899999888554444 368999999988
Q ss_pred CcEEEEEe-ecCCeEEEEecCCceEEEe---e----ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeec
Q psy3710 90 KQVVICLE-FNAPVKGVRLRRDKIVVVL---E----GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGR 161 (424)
Q Consensus 90 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~----~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (424)
++...... ....+.++++++++.++++ + +.|.+||.. .......+........+..+.++|+++++++ ..
T Consensus 76 ~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~-~~ 153 (333)
T 2dg1_A 76 KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN-GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFT-DF 153 (333)
T ss_dssp CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT-SCSCEEEECSSSSCCCEEEEEECTTSCEEEE-EC
T ss_pred CcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC-CCEEEEEEccCccCCcccceEECCCCCEEEE-ec
Confidence 88765543 5678999999999876655 2 479999975 4433323322222345778899999987775 43
Q ss_pred c------CCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEE-ecCCcEEEEEECCC-cceeeE--------Ee
Q psy3710 162 K------SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATA-SYKGTLIRVFDTGS-GQKLNE--------LR 225 (424)
Q Consensus 162 ~------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~~i~iwd~~~-~~~~~~--------~~ 225 (424)
. .+.|..+|..++ ....+..+...+..++|+|+|+.++.+ +.++. |.+||+.+ +..... +.
T Consensus 154 ~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~-i~~~d~~~~g~~~~~~~~~~~~~~~ 230 (333)
T 2dg1_A 154 RGYSTNPLGGVYYVSPDFR--TVTPIIQNISVANGIALSTDEKVLWVTETTANR-LHRIALEDDGVTIQPFGATIPYYFT 230 (333)
T ss_dssp CCBTTBCCEEEEEECTTSC--CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSSSEEEEEEEEEEECC
T ss_pred cccccCCCceEEEEeCCCC--EEEEeecCCCcccceEECCCCCEEEEEeCCCCe-EEEEEecCCCcCcccccceEEEecC
Confidence 2 355666665542 233333344567899999999866544 55777 99999864 332221 11
Q ss_pred c--ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCC------CCeEEEEEcCCCCEEEEEeCCC
Q psy3710 226 R--GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHE------APLSCIALNQTGTRLATASYKG 291 (424)
Q Consensus 226 ~--~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~d~ 291 (424)
. ....+++++++. ++++...++.|.+||.. ++ ....+..+. ..+.+++|+||++.|+.++.++
T Consensus 231 ~~~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~-g~-~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 231 GHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKR-GY-PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp SSSEEEEEEEBTTCC-EEEEEETTTEEEEECTT-SC-EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCCCCCceEECCCCC-EEEEEcCCCEEEEECCC-CC-EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 1 245678888876 44445667899999984 32 233333332 2688999999987777666553
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.6e-15 Score=129.33 Aligned_cols=253 Identities=11% Similarity=0.089 Sum_probs=162.3
Q ss_pred CCeeeEEEeccCceEEEEeCCcC--CCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe---e---cc--EE
Q psy3710 52 GGLGHVEMLFRCNYLALVGGGTH--PKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL---E---GL--IK 121 (424)
Q Consensus 52 ~~i~~~~~~~~~~~l~~~~~~~~--~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~---~~--i~ 121 (424)
..+....+ +++.++++..... ....++.|.+||+.+++... + ..+..++|+||+..++. + +. |.
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l---~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I---ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E---ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c---ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 34555666 8888887642100 00025789999998887543 3 56889999999977765 2 33 67
Q ss_pred EEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeecc--------------------------CCeEEEEeCCCCC
Q psy3710 122 VYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRK--------------------------SGHVHLVDLADPE 175 (424)
Q Consensus 122 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------------dg~i~i~d~~~~~ 175 (424)
+|++. .++........ . +..+.|+||++.|++++.. ...|.+||+.++
T Consensus 89 ~~~~~-~g~~~~l~~~~---~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~- 162 (347)
T 2gop_A 89 VADLE-TLSSKKILEAK---N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE- 162 (347)
T ss_dssp EEETT-TTEEEEEEEES---E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT-
T ss_pred EEECC-CCceEEEEcCC---C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC-
Confidence 77765 44444333332 2 7788999999999883322 357899999875
Q ss_pred CCCcccccccCCeEEEEEccCCCEEEEEecCC-------cEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecC-
Q psy3710 176 RPPLDIAAHEAPLSCIALNQTGTRLATASYKG-------TLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKS- 247 (424)
Q Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d- 247 (424)
+.+..+.. . .+..++|+|+| .++++..+. . ..+|.+.+++....... .....++|++..+++.+..+
T Consensus 163 ~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~-~~l~~~d~~~~~~l~~~-~~~~~~spdg~~l~~~~~~~~ 237 (347)
T 2gop_A 163 EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKF-WDIYIWEDGKEEKMFEK-VSFYAVDSDGERILLYGKPEK 237 (347)
T ss_dssp EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCC-EEEEEEETTEEEEEEEE-ESEEEEEECSSCEEEEECCSS
T ss_pred eEEeeecC-C-CcccccCCCCe-EEEEEeccccccccccc-ccEEEeCCCceEEeccC-cceeeECCCCCEEEEEEcccc
Confidence 33234444 3 78899999999 777775542 3 34443334443322222 33334489999888865432
Q ss_pred ------CeEEEEeCCCCCCCCeeeccCCCCeEE-EEEcCCCCEEEEEeCCCcEEEEEECCCCceeee-----------ec
Q psy3710 248 ------GHVHLVDLADPERPPLDIAAHEAPLSC-IALNQTGTRLATASYKGTLIRVFDTGSGQKLNE-----------LR 309 (424)
Q Consensus 248 ------g~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~-----------~~ 309 (424)
..|++|| +++ .......+...+.. +.|+ |+ ++++++.++. ++|| +.+++.... ++
T Consensus 238 ~~~~~~~~l~~~d--~~~-~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~-~~l~-~~~g~~~~~~~~~~~v~~~~~s 310 (347)
T 2gop_A 238 KYMSEHNKLYIYD--GKE-VMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS-VNLY-IWDGEIKPIAKGRHWIMGFDVD 310 (347)
T ss_dssp SCCCSSCEEEEEC--SSC-EEESSTTCCSEEEEEEEET-TE-EEEEEEETTE-EEEE-EESSSEEEEECSSSEEEEEEES
T ss_pred CCccccceEEEEC--CCc-eEeccccCCcccCCccEEc-Cc-EEEEEecCCc-EEEE-EcCCceEEEecCCCeEEeeeee
Confidence 5788888 332 23334456778886 9999 88 9999999998 9999 775554322 33
Q ss_pred cCCcEEEEEeCCCcE-EEEEcc
Q psy3710 310 RDSSYLCVSSDHGTV-HVFSVD 330 (424)
Q Consensus 310 ~~~~~l~~~~~d~~i-~iw~~~ 330 (424)
| .++++++.++.. .||.+.
T Consensus 311 ~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 311 E--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp S--SEEEEEECSSSCCEEEEES
T ss_pred C--cEEEEEcCCCChHHheEeC
Confidence 4 566677766654 677765
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-14 Score=123.77 Aligned_cols=221 Identities=14% Similarity=0.199 Sum_probs=154.6
Q ss_pred eeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccc------cccCCeEEEEE-ccCCCEEEEEec-CCcEEEEEE
Q psy3710 143 GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA------AHEAPLSCIAL-NQTGTRLATASY-KGTLIRVFD 214 (424)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~v~~~~~-~~~~~~l~~~~~-d~~~i~iwd 214 (424)
....++++++++++++ ...++.|.+||... .....+. ++...+..+++ .++++.+++... ++. |.+||
T Consensus 31 ~p~~v~~~~~g~l~v~-~~~~~~i~~~d~~g--~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~-i~~~d 106 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVA-DTNNHRIQIFDKEG--RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ-IQIYN 106 (286)
T ss_dssp CEEEEEECTTCCEEEE-EGGGTEEEEECTTS--CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE-EEEEC
T ss_pred CCceEEECCCCCEEEE-ECCCCEEEEECCCC--cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE-EEEEC
Confidence 3667888999987776 78899999999874 3333332 34467899999 467766666543 788 99999
Q ss_pred CCCcceeeEEec----ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec--cCCCCeEEEEEcCCCCEEEEEe
Q psy3710 215 TGSGQKLNELRR----GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA--AHEAPLSCIALNQTGTRLATAS 288 (424)
Q Consensus 215 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~ 288 (424)
.+++.+..+.. ....+++++++. ++++...++.|++||.... ....+. .+...+..++++|+|+++++..
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~--~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGN--VLHKFGCSKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSC--EEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCC--EEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence 56777766642 356788899886 5555677899999996532 222332 3456789999999999888877
Q ss_pred CCCcEEEEEECCCCceeee--------------eccCCcEEEEEeCCC-cEEEEEccccccccccccceeeeccCccccC
Q psy3710 289 YKGTLIRVFDTGSGQKLNE--------------LRRDSSYLCVSSDHG-TVHVFSVDEAQKINKQSSLASASFLPKYFSS 353 (424)
Q Consensus 289 ~d~~~i~iwd~~~~~~~~~--------------~~~~~~~l~~~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (424)
.++. |++||.. ++.+.. +.++|+++++...++ .|.+|+.. ++.+.....
T Consensus 183 ~~~~-i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~------------- 246 (286)
T 1q7f_A 183 RAHC-VKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALES------------- 246 (286)
T ss_dssp GGTE-EEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEE-------------
T ss_pred CCCE-EEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcc-------------
Confidence 8888 9999975 333332 346788888887776 99999954 343322111
Q ss_pred CceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecC
Q psy3710 354 SWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNS 395 (424)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~ 395 (424)
......+..++++|+|+.+++ +.|+.|++|++..
T Consensus 247 -------~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 247 -------KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp -------SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred -------cCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 001123567899999976555 6799999999863
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-14 Score=123.38 Aligned_cols=203 Identities=10% Similarity=-0.026 Sum_probs=138.7
Q ss_pred ccccCCceEEEEECCCCC-eeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEE
Q psy3710 6 SSTYKNGLLYAGFNQDQG-CFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVM 83 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~-~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~ 83 (424)
+..+.....+++|+|+|+ +++++..++ |..|+.+++ ......+...+..+.+.++++.+++.. .++.|.
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~-------~~~~i~ 93 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSH-------GLRRLE 93 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEET-------TTTEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEec-------CCCeEE
Confidence 445667788999999998 666776655 999998876 333444567788899999998766554 257999
Q ss_pred EEECCCCcEEEEEee-----cCCeEEEEecCCceEEEee---c---------------cEEEEeecCCCceeEEEeeCCC
Q psy3710 84 IWDDLKKQVVICLEF-----NAPVKGVRLRRDKIVVVLE---G---------------LIKVYTFIQCPQQLHVFETNPN 140 (424)
Q Consensus 84 iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~---~---------------~i~v~~~~~~~~~~~~~~~~~~ 140 (424)
+||..+++....... ...+..++++|++.+++++ + .-.||.+...++ ...+....
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~~~~- 171 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT-LSAPIRDR- 171 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC-EEEEECCC-
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCC-EEEeecCC-
Confidence 999988886544331 2356789999999877753 2 125666543333 33333322
Q ss_pred CCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCC---CcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCC
Q psy3710 141 PKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERP---PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS 217 (424)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~ 217 (424)
.....++++|+++.+++ ...++.|.+|++...... ...+..+...+..++++++|+++++. ++. |.+||..
T Consensus 172 -~~~~gi~~s~dg~~lv~-~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~-v~~~~~~- 245 (296)
T 3e5z_A 172 -VKPNGLAFLPSGNLLVS-DTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDG-VHVLTPD- 245 (296)
T ss_dssp -SSEEEEEECTTSCEEEE-ETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTE-EEEECTT-
T ss_pred -CCCccEEECCCCCEEEE-eCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCe-EEEECCC-
Confidence 33567899999999944 888899999998732122 12223345566789999999866655 677 9999975
Q ss_pred cceeeEEe
Q psy3710 218 GQKLNELR 225 (424)
Q Consensus 218 ~~~~~~~~ 225 (424)
++.+..+.
T Consensus 246 g~~~~~~~ 253 (296)
T 3e5z_A 246 GDELGRVL 253 (296)
T ss_dssp SCEEEEEE
T ss_pred CCEEEEEE
Confidence 55555443
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-14 Score=139.50 Aligned_cols=276 Identities=9% Similarity=-0.071 Sum_probs=178.7
Q ss_pred CCCCeeEeec-CCe---EEEEe--CCcCcccccc---c---ccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEEC
Q psy3710 20 QDQGCFACGM-EDG---FRIYN--CDPLKEKERQ---D---FTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDD 87 (424)
Q Consensus 20 ~~g~~la~g~-~~~---i~iw~--~~~~~~~~~~---~---~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~ 87 (424)
|+|++++... ..+ -.+|- ...++..... . .+...+..++|+|+++++++...... ....+|++||+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G--~~~~~i~v~d~ 158 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASG--SDWVTIKFMKV 158 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETT--CSCEEEEEEET
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCC--CceEEEEEEEC
Confidence 8998888443 221 24444 3333321111 1 12235788999999999998763210 01238999999
Q ss_pred CCCcEEEEEeecCCeEEEEecCCceEEEe---ecc----------------EEEEeecCCCce--eEEEeeCCCCCeeEE
Q psy3710 88 LKKQVVICLEFNAPVKGVRLRRDKIVVVL---EGL----------------IKVYTFIQCPQQ--LHVFETNPNPKGLCV 146 (424)
Q Consensus 88 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~----------------i~v~~~~~~~~~--~~~~~~~~~~~~~~~ 146 (424)
.+++.+........+..++|+||+..++. ++. |++|++. +++. ...+....++.....
T Consensus 159 ~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~-t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 159 DGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLG-TDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp TTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETT-SCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECC-CCcccceEEeccCCCCeEEEE
Confidence 99988764433334778999999976664 433 9999986 4432 223333333445678
Q ss_pred EeecCCCCeEEEeecc----CCeEEEEeCCC------CCCCCcccccccCCeEEEEEccCCCEEEEEec----CCcEEEE
Q psy3710 147 LCPNSNNSLLAFPGRK----SGHVHLVDLAD------PERPPLDIAAHEAPLSCIALNQTGTRLATASY----KGTLIRV 212 (424)
Q Consensus 147 ~~~~~~~~~l~~~~~~----dg~i~i~d~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~~i~i 212 (424)
+.++|||++|+++... +..|.+||+.+ +......+..+...+.. .|+|+|+.|+..+. ... |.+
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~-l~~ 315 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYR-LIN 315 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCE-EEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCE-EEE
Confidence 8999999999883321 57899999986 42345666666666655 48899988877654 236 999
Q ss_pred EECCCcce--eeEEecc-----eeeeeecCCCCeEEEEeecCCe--EEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCE
Q psy3710 213 FDTGSGQK--LNELRRG-----LCVLCPNSNNSLLAFPGRKSGH--VHLVDLADPERPPLDIAAHEAPLSCIALNQTGTR 283 (424)
Q Consensus 213 wd~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 283 (424)
||+.++.. ...+..+ +..++++ ++..++++...++. |++||+.+++ ....+..+...+..++++|+++.
T Consensus 316 ~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~lv~~~~~~g~~~l~~~~~~~g~-~~~~l~~~~~~v~~~~~s~d~~~ 393 (710)
T 2xdw_A 316 IDFTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHDVKNTLQLHDLATGA-LLKIFPLEVGSVVGYSGQKKDTE 393 (710)
T ss_dssp EETTSCCGGGCEEEECCCSSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTTCC-EEEEECCCSSEEEEEECCTTCSE
T ss_pred EeCCCCCcccceeccCCCCCCeEEEEEEE-cCCEEEEEEEECCEEEEEEEECCCCC-EEEecCCCCceEEEEecCCCCCE
Confidence 99987642 2333222 3345565 45667777888884 5667775554 23445566778899999999876
Q ss_pred EEEEe----CCCcEEEEEECCCCc
Q psy3710 284 LATAS----YKGTLIRVFDTGSGQ 303 (424)
Q Consensus 284 l~~~~----~d~~~i~iwd~~~~~ 303 (424)
++... ..+. |.+||+.+++
T Consensus 394 l~~~~ss~~~P~~-i~~~d~~tg~ 416 (710)
T 2xdw_A 394 IFYQFTSFLSPGI-IYHCDLTKEE 416 (710)
T ss_dssp EEEEEECSSCCCE-EEEEETTSSS
T ss_pred EEEEEeCCCCCCE-EEEEECCCCc
Confidence 66432 2467 9999998877
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-13 Score=120.07 Aligned_cols=245 Identities=10% Similarity=0.006 Sum_probs=163.1
Q ss_pred ccccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEE
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMI 84 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 84 (424)
+.++...+.+++|+|+|++++++..++ |.+||.++++.......+...+..+.+.++++.+++..... ...+.|.+
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~---~~~~~i~~ 116 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDF---KSTGGIFA 116 (333)
T ss_dssp EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTS---SSCCEEEE
T ss_pred EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCC---CCCceEEE
Confidence 445667789999999999877777666 99999887765433323456788999999998766654210 00158999
Q ss_pred EECCCCcEEEEEe---ecCCeEEEEecCCceEEEeec-------cEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCC
Q psy3710 85 WDDLKKQVVICLE---FNAPVKGVRLRRDKIVVVLEG-------LIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNS 154 (424)
Q Consensus 85 wd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~-------~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (424)
||.++++....+. ....+.+++++|++.+++++. ...+|.+.........+.... .....++++|+++
T Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI--SVANGIALSTDEK 194 (333)
T ss_dssp ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE--SSEEEEEECTTSS
T ss_pred EeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCC--CcccceEECCCCC
Confidence 9998877654333 245689999999997766522 344555432322233332221 2256788999998
Q ss_pred eEEEeeccCCeEEEEeCCCCCCCCcc--------cccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEec
Q psy3710 155 LLAFPGRKSGHVHLVDLADPERPPLD--------IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR 226 (424)
Q Consensus 155 ~l~~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~ 226 (424)
.++++...++.|.+||+.+....... +.++ ..+..++++++|+++++...++. |.+||. +++.+..+..
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~-v~~~d~-~g~~~~~~~~ 271 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGR-VLVFNK-RGYPIGQILI 271 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTE-EEEECT-TSCEEEEEEC
T ss_pred EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCE-EEEECC-CCCEEEEEEc
Confidence 77664667899999999642122211 1122 36788999999998887777788 999998 5666666653
Q ss_pred ---------ceeeeeecCCCCeEEEEeecC-----CeEEEEeCCCC
Q psy3710 227 ---------GLCVLCPNSNNSLLAFPGRKS-----GHVHLVDLADP 258 (424)
Q Consensus 227 ---------~~~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~ 258 (424)
....+++++++..+++++... +.|..+++...
T Consensus 272 ~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~~~ 317 (333)
T 2dg1_A 272 PGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFAK 317 (333)
T ss_dssp TTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSSC
T ss_pred CCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecccC
Confidence 256678888887777755442 35666666543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-13 Score=116.29 Aligned_cols=275 Identities=10% Similarity=-0.038 Sum_probs=181.5
Q ss_pred ccccCCceEEEEECCCCCeeEeecCC-eEEEEeCCcCccccc-ccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEE
Q psy3710 6 SSTYKNGLLYAGFNQDQGCFACGMED-GFRIYNCDPLKEKER-QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVM 83 (424)
Q Consensus 6 l~~h~~~V~~~~~s~~g~~la~g~~~-~i~iw~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~ 83 (424)
+..+...+.+++++++|+++++...+ +|.+||.+ ++.... ...+...+..+.+.+++...++.. .++.|.
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-------~~~~i~ 81 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTEN-------AANKIG 81 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEET-------TTTEEE
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCC-------CCCeEE
Confidence 44566789999999999987776644 49999987 443221 112345678888888887666544 257899
Q ss_pred EEECCCCcEEEEEe---ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEE
Q psy3710 84 IWDDLKKQVVICLE---FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLA 157 (424)
Q Consensus 84 iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (424)
.||.. ++. ..+. ....+.++++.+++.+.++ ++.|.+||. +++.. .+...........+++++++..++
T Consensus 82 ~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~--~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v 156 (299)
T 2z2n_A 82 RITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD--DGKIR-EYELPNKGSYPSFITLGSDNALWF 156 (299)
T ss_dssp EECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT--TCCEE-EEECSSTTCCEEEEEECTTSCEEE
T ss_pred EECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC--CCCEE-EecCCCCCCCCceEEEcCCCCEEE
Confidence 99975 443 3333 2457899999998866655 468888886 23322 222222223467888999998777
Q ss_pred EeeccCCeEEEEeCCCCCCCCc-ccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeE-Ee---cceeeee
Q psy3710 158 FPGRKSGHVHLVDLADPERPPL-DIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE-LR---RGLCVLC 232 (424)
Q Consensus 158 ~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~-~~---~~~~~~~ 232 (424)
+ ...++.|..||. ++ .... ....+...+..++++++|+..++...++. |..||. +++.... .. .....++
T Consensus 157 ~-~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~-~g~~~~~~~~~~~~~~~~i~ 231 (299)
T 2z2n_A 157 T-ENQNNAIGRITE-SG-DITEFKIPTPASGPVGITKGNDDALWFVEIIGNK-IGRITT-SGEITEFKIPTPNARPHAIT 231 (299)
T ss_dssp E-ETTTTEEEEECT-TC-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEEEEECSSTTCCEEEEE
T ss_pred E-eCCCCEEEEEcC-CC-cEEEeeCCCCCCcceeEEECCCCCEEEEccCCce-EEEECC-CCcEEEEECCCCCCCceeEE
Confidence 5 666789999998 43 2221 12334456889999999987776666778 999999 6654321 22 2256778
Q ss_pred ecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCc
Q psy3710 233 PNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ 303 (424)
Q Consensus 233 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~ 303 (424)
+++++. ++++...++.|..||.. +......+..+...+.++++ ++|+++++.+ .+. +..++.++++
T Consensus 232 ~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~-l~~~~~~~~~ 297 (299)
T 2z2n_A 232 AGAGID-LWFTEWGANKIGRLTSN-NIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDK-IGKLTLIKDN 297 (299)
T ss_dssp ECSTTC-EEEEETTTTEEEEEETT-TEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTE-EEEEEEC---
T ss_pred ECCCCC-EEEeccCCceEEEECCC-CceEEEeCCCCCCccceEEe-cCCCEEEEec-CCc-EEEEEcCccc
Confidence 888876 55545577899999983 32111112344567899999 8887766655 455 7778876553
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.6e-14 Score=119.98 Aligned_cols=217 Identities=11% Similarity=0.060 Sum_probs=151.9
Q ss_pred eeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceee
Q psy3710 143 GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN 222 (424)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~ 222 (424)
....++|+|+++.++.++..++.|..||..++ ...+..+...+.+++++|+|+++++...++. |.+||..+++...
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~-i~~~d~~~g~~~~ 104 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGHLIACSHGLRR-LERQREPGGEWES 104 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCCEEEEETTTTE-EEEECSTTCCEEE
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCcEEEEecCCCe-EEEEcCCCCcEEE
Confidence 35678999999844444889999999999863 5566667788999999999998877777788 9999998876543
Q ss_pred EEec-------ceeeeeecCCCCeEEEE---ee-------------cCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcC
Q psy3710 223 ELRR-------GLCVLCPNSNNSLLAFP---GR-------------KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQ 279 (424)
Q Consensus 223 ~~~~-------~~~~~~~~~~~~~~~~~---~~-------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 279 (424)
.... ....+++++++..++.. |+ ..+.|..++.. ++ ...+..+......++|+|
T Consensus 105 ~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~~gi~~s~ 181 (296)
T 3e5z_A 105 IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT--LSAPIRDRVKPNGLAFLP 181 (296)
T ss_dssp EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC--EEEEECCCSSEEEEEECT
T ss_pred EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC--EEEeecCCCCCccEEECC
Confidence 3221 13457888988755432 22 13567777665 22 333445667789999999
Q ss_pred CCCEEEEEeCCCcEEEEEECC-CCce---ee------------eeccCCcEEEEEeCCCcEEEEEcccccccccccccee
Q psy3710 280 TGTRLATASYKGTLIRVFDTG-SGQK---LN------------ELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLAS 343 (424)
Q Consensus 280 ~~~~l~~~~~d~~~i~iwd~~-~~~~---~~------------~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 343 (424)
+++.+++.+.++. |.+|++. +++. .. .+.++|+++++. ++.|.+|+.. ++.+..
T Consensus 182 dg~~lv~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~------ 251 (296)
T 3e5z_A 182 SGNLLVSDTGDNA-THRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGR------ 251 (296)
T ss_dssp TSCEEEEETTTTE-EEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEE------
T ss_pred CCCEEEEeCCCCe-EEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEE------
Confidence 9999877777788 9999987 4544 12 244677766665 7889999976 443322
Q ss_pred eeccCccccCCceeeEEeecCCCceEEEE-ecCCCeEEEEeccCcEEEEEecCC
Q psy3710 344 ASFLPKYFSSSWSFCKFQIPSDPPCICAF-GADSNSIIVICADGSYYKFMFNSK 396 (424)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~~~~dg~v~~~~~~~~ 396 (424)
+..+.. +..++| +|+++.|++++.++ +|.++..
T Consensus 252 ----------------~~~~~~-~~~~~f~~~d~~~L~v~t~~~---l~~~~~~ 285 (296)
T 3e5z_A 252 ----------------VLTPQT-TSNLCFGGPEGRTLYMTVSTE---FWSIETN 285 (296)
T ss_dssp ----------------EECSSC-CCEEEEESTTSCEEEEEETTE---EEEEECS
T ss_pred ----------------EECCCC-ceeEEEECCCCCEEEEEcCCe---EEEEEcc
Confidence 333444 678899 58999999988763 4444433
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-13 Score=122.19 Aligned_cols=248 Identities=12% Similarity=0.022 Sum_probs=165.4
Q ss_pred cEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeec---------cCCeEEEEeCCCCCCCCcccccc-----
Q psy3710 119 LIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGR---------KSGHVHLVDLADPERPPLDIAAH----- 184 (424)
Q Consensus 119 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~dg~i~i~d~~~~~~~~~~~~~~----- 184 (424)
.|.+||.. +++.+..+..... . .+.++||+++++++.. .++.|.+||..+. +.+..+...
T Consensus 48 ~v~v~D~~-t~~~~~~i~~g~~---p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~-~~~~~i~~~~~~~~ 121 (373)
T 2mad_H 48 QQWVLDAG-SGSILGHVNGGFL---P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF-LPIADIELPDAPRF 121 (373)
T ss_pred EEEEEECC-CCeEEEEecCCCC---C-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC-cEEEEEECCCcccc
Confidence 78999986 6777766665432 2 6789999999998332 3678999999875 333333211
Q ss_pred --cCCeEEEEEccCCCEEEEEec--CCcEEEEEECCCcceeeE-EecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCC
Q psy3710 185 --EAPLSCIALNQTGTRLATASY--KGTLIRVFDTGSGQKLNE-LRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE 259 (424)
Q Consensus 185 --~~~v~~~~~~~~~~~l~~~~~--d~~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 259 (424)
......++|+|||++|+.+.. ++. |.++| .+++.+.. ++.+.. ..+.+.+...+++.+.||.+.++|. +++
T Consensus 122 ~~g~~p~~~~~spDG~~l~v~n~~~~~~-v~viD-~t~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~dg~~~~vd~-~g~ 197 (373)
T 2mad_H 122 DVGPYSWMNANTPNNADLLFFQFAAGPA-VGLVV-QGGSSDDQLLSSPTC-YHIHPGAPSTFYLLCAQGGLAKTDH-AGG 197 (373)
T ss_pred ccCCCccceEECCCCCEEEEEecCCCCe-EEEEE-CCCCEEeEEcCCCce-EEEEeCCCceEEEEcCCCCEEEEEC-CCc
Confidence 123468999999999998874 467 99999 99998888 765433 4456777666777888999999999 655
Q ss_pred CCCeee----ccCCCC-eEEEEEcCCCCEEEEEeCCCcEEEEEECCCCce------------------------eeeecc
Q psy3710 260 RPPLDI----AAHEAP-LSCIALNQTGTRLATASYKGTLIRVFDTGSGQK------------------------LNELRR 310 (424)
Q Consensus 260 ~~~~~~----~~~~~~-v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~------------------------~~~~~~ 310 (424)
...... .....+ .....+.+++..++..+..+. +.+.|+.++.. ...+++
T Consensus 198 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~ 276 (373)
T 2mad_H 198 AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGK-ILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK 276 (373)
T ss_pred EEEEEeccccccCCcceeecceeEecCCEEEEEcCCce-EEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC
Confidence 321100 011122 233456776665555556777 88888864421 123456
Q ss_pred CCcEEEEEeC----------CCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCC-eE
Q psy3710 311 DSSYLCVSSD----------HGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSN-SI 379 (424)
Q Consensus 311 ~~~~l~~~~~----------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l 379 (424)
+++.+.++.. ++.|.++|+.+++.+.++.. .+....++|+|||+ .+
T Consensus 277 d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-----------------------g~~p~~i~~s~Dg~~~l 333 (373)
T 2mad_H 277 SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-----------------------GHDVDAISVAQDGGPDL 333 (373)
T ss_pred CCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-----------------------CCCcCeEEECCCCCeEE
Confidence 6666666543 35788899888776544321 12345889999999 77
Q ss_pred EEEe-ccCcEEEEEecCCcceee
Q psy3710 380 IVIC-ADGSYYKFMFNSKGECWR 401 (424)
Q Consensus 380 ~~~~-~dg~v~~~~~~~~~~~~~ 401 (424)
+++. .++.|.++|.. +++.++
T Consensus 334 ~v~~~~~~~V~ViD~~-t~~vv~ 355 (373)
T 2mad_H 334 YALSAGTEVLHIYDAG-AGDQDQ 355 (373)
T ss_pred EEEcCCCCeEEEEECC-CCCEEe
Confidence 7776 48999999987 555544
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-14 Score=126.47 Aligned_cols=247 Identities=12% Similarity=0.053 Sum_probs=171.7
Q ss_pred CCCeEEEEECCCCcEEEEEe-------ecCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEe
Q psy3710 78 PNNRVMIWDDLKKQVVICLE-------FNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLC 148 (424)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (424)
.++.|.++|.++++....+. .......+.+..+..+++. ++.|.+||.. +.+.+..+... .....++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~-t~~~~~~i~~~---~~p~~i~ 90 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDIN-TFKEVGRITGF---TSPRYIH 90 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETT-TCCEEEEEECC---SSEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECc-ccEEEEEcCCC---CCCcEEE
Confidence 37899999999998876542 2345678888777777776 6899999996 77777777533 3356677
Q ss_pred ecCCCCeEEEeeccCCeEEEEeCCCCCCCCccccccc-----CCeEEEEEccCCCEEEEEe--cCCcEEEEEECCCccee
Q psy3710 149 PNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHE-----APLSCIALNQTGTRLATAS--YKGTLIRVFDTGSGQKL 221 (424)
Q Consensus 149 ~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~--~d~~~i~iwd~~~~~~~ 221 (424)
++++++ +.++...++.|.+||..+. +....+.... .....+++ . +..++.+. .++. |.++|..+++.+
T Consensus 91 ~~~~g~-lyv~~~~~~~v~~iD~~t~-~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~-v~viD~~t~~~~ 165 (328)
T 3dsm_A 91 FLSDEK-AYVTQIWDYRIFIINPKTY-EITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNR-ILKIDTETDKVV 165 (328)
T ss_dssp EEETTE-EEEEEBSCSEEEEEETTTT-EEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCE-EEEEETTTTEEE
T ss_pred EeCCCe-EEEEECCCCeEEEEECCCC-eEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCE-EEEEECCCCeEE
Confidence 878884 5542447899999999875 3333333222 14556777 3 44555554 4788 999999999888
Q ss_pred eEEecc--eeeeeecCCCCeEEEEeec---------CCeEEEEeCCCCCCCCeeecc-CCCCeEEEEEcCCCCEEEEEeC
Q psy3710 222 NELRRG--LCVLCPNSNNSLLAFPGRK---------SGHVHLVDLADPERPPLDIAA-HEAPLSCIALNQTGTRLATASY 289 (424)
Q Consensus 222 ~~~~~~--~~~~~~~~~~~~~~~~~~~---------dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 289 (424)
..+..+ ...+++++++..++.+... .+.|.++|..+.+. ...+.. .......++|+|+++.|+++..
T Consensus 166 ~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v-~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 166 DELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV-EKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp EEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE-EEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred EEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE-EEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 777643 4567888888755443222 37999999987652 222222 1346899999999999988766
Q ss_pred CCcEEEEEECCCCceee--------------eecc-CCcEEEEE----eCCCcEEEEEcccccccccc
Q psy3710 290 KGTLIRVFDTGSGQKLN--------------ELRR-DSSYLCVS----SDHGTVHVFSVDEAQKINKQ 338 (424)
Q Consensus 290 d~~~i~iwd~~~~~~~~--------------~~~~-~~~~l~~~----~~d~~i~iw~~~~~~~~~~~ 338 (424)
. |.+||..+++... .+.| ++.++++. ..++.|.+||.. ++.+.+.
T Consensus 245 --~-v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 245 --D-IWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp --S-EEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred --E-EEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 6 9999998876431 2456 45566665 568899999998 6765543
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-13 Score=118.40 Aligned_cols=281 Identities=13% Similarity=0.067 Sum_probs=185.9
Q ss_pred EEECCCCCeeEeecC-----Ce-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcC--CC-cCCCeEEEEE
Q psy3710 16 AGFNQDQGCFACGME-----DG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTH--PK-YPNNRVMIWD 86 (424)
Q Consensus 16 ~~~s~~g~~la~g~~-----~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~--~~-~~d~~i~iwd 86 (424)
....|+++.+.+... ++ |.++|..+++.+........+ .+.++|+++.++++..... .. -.++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 456799988887654 34 999999998886555443444 4999999999887752000 00 0147899999
Q ss_pred CCCCcEEEEEeecC--------CeEEEEecCCceEEEe-----eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCC
Q psy3710 87 DLKKQVVICLEFNA--------PVKGVRLRRDKIVVVL-----EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNN 153 (424)
Q Consensus 87 ~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~-----~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (424)
..+++.+.++.... ....++++||+..+.. ++.|.++|+. +.+.+.++.... +. ..+....
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~-t~~vv~tI~v~g----~~-~~~P~g~ 189 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE-GKAFKRMLDVPD----CY-HIFPTAP 189 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT-TTEEEEEEECCS----EE-EEEEEET
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC-CCcEEEEEECCC----cc-eeecCCC
Confidence 99999999987432 5678999999975543 4689999997 788888775432 11 1111223
Q ss_pred CeEEEeeccCCeEEEEeCCCCCCCCc----ccccccCCeE-EEEEc-cCCCEEEEEecCCcEEEEEECCCcc--eeeEEe
Q psy3710 154 SLLAFPGRKSGHVHLVDLADPERPPL----DIAAHEAPLS-CIALN-QTGTRLATASYKGTLIRVFDTGSGQ--KLNELR 225 (424)
Q Consensus 154 ~~l~~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~v~-~~~~~-~~~~~l~~~~~d~~~i~iwd~~~~~--~~~~~~ 225 (424)
+.+++ .+.||.+.+.++....+... .+..-..++. ...|. ++|++++ .+.++. |++.|+.+.. ....+.
T Consensus 190 ~~~~~-~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~-V~v~d~~~~~~~v~~~~~ 266 (386)
T 3sjl_D 190 DTFFM-HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGK-IHQIDLSSGDAKFLPAVE 266 (386)
T ss_dssp TEEEE-EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSE-EEEEECTTSSCEECCCEE
T ss_pred ceeEE-ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCE-EEEEECCCCcceeeccee
Confidence 34443 56677777777765212211 1111112221 23554 5775444 566888 9999997654 333332
Q ss_pred -------------cceeeeeecCCCCeEEEEeec---------CCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCC-
Q psy3710 226 -------------RGLCVLCPNSNNSLLAFPGRK---------SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT- 282 (424)
Q Consensus 226 -------------~~~~~~~~~~~~~~~~~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 282 (424)
.+...++++++++.++++... .++|.++|+.+.+.......+ ..+..|+++||++
T Consensus 267 ~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~ 344 (386)
T 3sjl_D 267 ALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKP 344 (386)
T ss_dssp SSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSC
T ss_pred ccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCCe
Confidence 234557888999988886432 357999999997753333223 3688999999997
Q ss_pred EEEEEe-CCCcEEEEEECCCCceeeeecc
Q psy3710 283 RLATAS-YKGTLIRVFDTGSGQKLNELRR 310 (424)
Q Consensus 283 ~l~~~~-~d~~~i~iwd~~~~~~~~~~~~ 310 (424)
+|+++. .++. |.++|..+++.+.++.-
T Consensus 345 ~ly~tn~~~~~-VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 345 LLYALSTGDKT-LYIHDAESGEELRSVNQ 372 (386)
T ss_dssp EEEEEETTTTE-EEEEETTTCCEEEEECC
T ss_pred EEEEEcCCCCe-EEEEECCCCcEEEEecC
Confidence 666654 4778 99999999999998763
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-14 Score=140.15 Aligned_cols=255 Identities=9% Similarity=-0.055 Sum_probs=157.3
Q ss_pred ccCCceEEEEECCCCCeeE-----eecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCe
Q psy3710 8 TYKNGLLYAGFNQDQGCFA-----CGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNR 81 (424)
Q Consensus 8 ~h~~~V~~~~~s~~g~~la-----~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 81 (424)
+|...+..++|||||++|| .|+++. |++||+++++.+............++|+|+++.+++++.. ..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d-------~~ 190 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLP-------TD 190 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECC-------CC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEec-------CC
Confidence 5666799999999999999 344444 9999999887651111112222679999999999988842 21
Q ss_pred EEEEECCCCcEEEEEeecCCeEEEEecCCceEEEeeccEEEEeecCCCc--eeEEEeeCCCCCeeEEEeecCCCCeEEEe
Q psy3710 82 VMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQ--QLHVFETNPNPKGLCVLCPNSNNSLLAFP 159 (424)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (424)
..+.. .. . .....|++|++. ++. ....+....++..+..+.++|||++|++
T Consensus 191 ------~~~~~------~~--------~-----~~~~~v~~~~l~-t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~- 243 (695)
T 2bkl_A 191 ------PSIKV------DE--------R-----PGYTTIRYHTLG-TEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFV- 243 (695)
T ss_dssp ------TTSCG------GG--------G-----GGGCEEEEEETT-SCGGGCEEEECCCCCTTCEEEEEECTTSCCEEE-
T ss_pred ------CCCcc------cc--------C-----CCCCEEEEEECC-CCchhceEEEecCCCCEEEEEEEECCCCCEEEE-
Confidence 00000 00 0 002345566654 222 1122233233345678899999999988
Q ss_pred eccCC----eEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEec----CCcEEEEEECCCcce---eeEEec--
Q psy3710 160 GRKSG----HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY----KGTLIRVFDTGSGQK---LNELRR-- 226 (424)
Q Consensus 160 ~~~dg----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~~i~iwd~~~~~~---~~~~~~-- 226 (424)
++.++ .|.+++..+ .....+..+...+....+ ++|+ ++..+. ++. |.+||+.+++. ...+..
T Consensus 244 ~~~~~~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~-l~~~d~~~~~~~~~~~l~~~~~ 318 (695)
T 2bkl_A 244 YILRGWSENDVYWKRPGE--KDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQR-VFEVDPAKPARASWKEIVPEDS 318 (695)
T ss_dssp EEEETTTEEEEEEECTTC--SSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCE-EEEEBTTBCSGGGCEEEECCCS
T ss_pred EEeCCCCceEEEEEcCCC--CceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCE-EEEEeCCCCCccCCeEEecCCC
Confidence 44444 666666544 345556666666777777 5666 554443 467 99999987653 222222
Q ss_pred c--eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccC-CCCeEEEEEcCCCCEEEEEe----CCCcEEEEEEC
Q psy3710 227 G--LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAH-EAPLSCIALNQTGTRLATAS----YKGTLIRVFDT 299 (424)
Q Consensus 227 ~--~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~----~d~~~i~iwd~ 299 (424)
. +..++++ +..++++...++..++|.+.........+..+ ...+..++++|+++.++... ..+. |++||+
T Consensus 319 ~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~-v~~~d~ 395 (695)
T 2bkl_A 319 SASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ-IYKTSV 395 (695)
T ss_dssp SCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE-EEEEET
T ss_pred CCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE-EEEEEC
Confidence 1 3344554 66788889999988887665222223334334 56778889999988776333 3466 999999
Q ss_pred CCCce
Q psy3710 300 GSGQK 304 (424)
Q Consensus 300 ~~~~~ 304 (424)
.+++.
T Consensus 396 ~~g~~ 400 (695)
T 2bkl_A 396 STGKS 400 (695)
T ss_dssp TTCCE
T ss_pred CCCcE
Confidence 88764
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-14 Score=136.29 Aligned_cols=248 Identities=13% Similarity=0.095 Sum_probs=166.4
Q ss_pred ccCCceEEEEECCCCCeeEeecC-C-----eEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCC-----
Q psy3710 8 TYKNGLLYAGFNQDQGCFACGME-D-----GFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPK----- 76 (424)
Q Consensus 8 ~h~~~V~~~~~s~~g~~la~g~~-~-----~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~----- 76 (424)
+|...+..++|||||++||.+.+ + .|++||+++++..... .....+..++|+||++.+++++......
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEEECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-ccCcccceEEEEeCCCEEEEEEECCcccccccc
Confidence 35557889999999999995432 1 3999999988775422 2223366799999999999988432100
Q ss_pred ----cCCCeEEEEECCCCcE--EEEEe---ecCCeEEEEecCCceEEEe--------eccEEEEeecCC-----Cc-eeE
Q psy3710 77 ----YPNNRVMIWDDLKKQV--VICLE---FNAPVKGVRLRRDKIVVVL--------EGLIKVYTFIQC-----PQ-QLH 133 (424)
Q Consensus 77 ----~~d~~i~iwd~~~~~~--~~~~~---~~~~v~~~~~~~~~~~~~~--------~~~i~v~~~~~~-----~~-~~~ 133 (424)
.....|++|++.+++. ...+. +...+..+.|+||+..++. +..|.+||+... +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 0123599999988762 12222 2445789999999977664 247899998630 22 345
Q ss_pred EEeeCCCCCeeEEEeecCCCCeEEEeecc---CCeEEEEeCCCCCC-CCcccccccC--CeEEEEEccCCCEEEEEecCC
Q psy3710 134 VFETNPNPKGLCVLCPNSNNSLLAFPGRK---SGHVHLVDLADPER-PPLDIAAHEA--PLSCIALNQTGTRLATASYKG 207 (424)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---dg~i~i~d~~~~~~-~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~ 207 (424)
.+..+... ... .++++|+.|++.+.. .+.|.+||+.++.. ....+..|.. .+..++|++++.++++...++
T Consensus 281 ~l~~~~~~--~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g 357 (710)
T 2xdw_A 281 KLIDNFEG--EYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV 357 (710)
T ss_dssp EEECSSSS--CEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred EeeCCCCc--EEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC
Confidence 55554433 222 467888888874443 34799999987521 2244445544 688899997777888888887
Q ss_pred c-EEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEee---cCCeEEEEeCCCCC
Q psy3710 208 T-LIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGR---KSGHVHLVDLADPE 259 (424)
Q Consensus 208 ~-~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~dg~i~i~d~~~~~ 259 (424)
. .|.+||+.+++.+..+..+ +..+++++++..++++.+ ..++|+.||+.+++
T Consensus 358 ~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 358 KNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 4 1667787777766666543 455677888888877544 35789999998765
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.66 E-value=6e-13 Score=117.53 Aligned_cols=276 Identities=11% Similarity=0.014 Sum_probs=181.2
Q ss_pred EECCCCCeeEeecC--C----eEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcC---CCcCCCeEEEEEC
Q psy3710 17 GFNQDQGCFACGME--D----GFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTH---PKYPNNRVMIWDD 87 (424)
Q Consensus 17 ~~s~~g~~la~g~~--~----~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~---~~~~d~~i~iwd~ 87 (424)
...|+++++.+... . .|.+||..+++.+..... +....+.++|+++.++++..... ....++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~--g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG--GFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecC--CCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 45578877665442 2 579999988877544333 22238999999999988752100 0002578999999
Q ss_pred CCCcEEEEEeec--------CCeEEEEecCCceEEEe-----eccEEEEeecCCCceeEE-EeeCCCCCeeEEEeecCCC
Q psy3710 88 LKKQVVICLEFN--------APVKGVRLRRDKIVVVL-----EGLIKVYTFIQCPQQLHV-FETNPNPKGLCVLCPNSNN 153 (424)
Q Consensus 88 ~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~-----~~~i~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 153 (424)
.+.+.+.++... .....++++||+..+.. ++.|.++| . +++.+.. +.... . +.+.|++
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~-t~~~~~~~i~~~~----~--~~~~~~~ 176 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-Q-GGSSDDQLLSSPT----C--YHIHPGA 176 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-C-CCCEEeEEcCCCc----e--EEEEeCC
Confidence 999988887643 34568999999976654 36799999 6 7777666 54322 1 2334455
Q ss_pred CeEEEeeccCCeEEEEeCCCCCCCCcccc-----cccCC-eEEEEEccCCCEEEEEecCCcEEEEEECCCcc--eeeEEe
Q psy3710 154 SLLAFPGRKSGHVHLVDLADPERPPLDIA-----AHEAP-LSCIALNQTGTRLATASYKGTLIRVFDTGSGQ--KLNELR 225 (424)
Q Consensus 154 ~~l~~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~-v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~--~~~~~~ 225 (424)
+..+++.+.||.+.++|. ++ +...... ....+ .....+.+++..++..+..+. +.+.|+.+.. .+..+.
T Consensus 177 ~~~~~~~~~dg~~~~vd~-~g-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-v~vid~~~~~~~v~~~~~ 253 (373)
T 2mad_H 177 PSTFYLLCAQGGLAKTDH-AG-GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGK-ILQADISAAGATNKAPID 253 (373)
T ss_pred CceEEEEcCCCCEEEEEC-CC-cEEEEEeccccccCCcceeecceeEecCCEEEEEcCCce-EEEEeccCCcceEeeeee
Confidence 444333678999999999 65 3221111 11122 123456676666555556777 9999997553 222221
Q ss_pred -------------cceeeeeecCCCCeEEEEee---------cCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCC-
Q psy3710 226 -------------RGLCVLCPNSNNSLLAFPGR---------KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT- 282 (424)
Q Consensus 226 -------------~~~~~~~~~~~~~~~~~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 282 (424)
.+...+.++++++.++++.. .++.|.++|+.+.+. ...+. -.....+++|+|||+
T Consensus 254 ~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v-v~~i~-~g~~p~~i~~s~Dg~~ 331 (373)
T 2mad_H 254 ALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT-SSQIS-LGHDVDAISVAQDGGP 331 (373)
T ss_pred ecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE-EEEEE-CCCCcCeEEECCCCCe
Confidence 12334778999888887543 246899999988763 33332 233688999999999
Q ss_pred EEEEEe-CCCcEEEEEECCCCceeeee
Q psy3710 283 RLATAS-YKGTLIRVFDTGSGQKLNEL 308 (424)
Q Consensus 283 ~l~~~~-~d~~~i~iwd~~~~~~~~~~ 308 (424)
+++++. .++. |.++|+.+++.+.++
T Consensus 332 ~l~v~~~~~~~-V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 332 DLYALSAGTEV-LHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEEcCCCCe-EEEEECCCCCEEeee
Confidence 777777 4788 999999999998874
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-13 Score=115.58 Aligned_cols=190 Identities=11% Similarity=-0.016 Sum_probs=144.8
Q ss_pred CCCeeEeecCCe-EEEEeCCcCcccccccccC-CCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEee
Q psy3710 21 DQGCFACGMEDG-FRIYNCDPLKEKERQDFTD-GGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEF 98 (424)
Q Consensus 21 ~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 98 (424)
.+++|++++.++ |.+||.++++.+.....+. ..+..+.++|+++.++ .. ++.|..||. +|+.+.++..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~--------~~~V~~~d~-~G~~~W~~~~ 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SY--------SKGAKMITR-DGRELWNIAA 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-EC--------BSEEEEECT-TSCEEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eC--------CCCEEEECC-CCCEEEEEcC
Confidence 457788888778 9999998999877666544 4678899999999887 22 578999999 8999999984
Q ss_pred c--CCeEEEEecCCceEEEe-ec-cEEEEeecCCCceeEEEeeCCCC----CeeEEEeecCCCCeEEEeeccCCeEEEEe
Q psy3710 99 N--APVKGVRLRRDKIVVVL-EG-LIKVYTFIQCPQQLHVFETNPNP----KGLCVLCPNSNNSLLAFPGRKSGHVHLVD 170 (424)
Q Consensus 99 ~--~~v~~~~~~~~~~~~~~-~~-~i~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~dg~i~i~d 170 (424)
. ..+.++.+.+++.++++ .+ .-+++-++.+++.+..+...... .....+++.++|+++++ ...++.|..||
T Consensus 74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~-~~~~~~v~~~d 152 (276)
T 3no2_A 74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVP-LFATSEVREIA 152 (276)
T ss_dssp CTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEE-ETTTTEEEEEC
T ss_pred CCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEE-ecCCCEEEEEC
Confidence 3 57889999999988876 33 45555554567777776542210 11223456889999987 88999999999
Q ss_pred CCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe
Q psy3710 171 LADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR 225 (424)
Q Consensus 171 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 225 (424)
.+ + +.+..+... ....++...++|+.++++..++. |..+|..+++.+.++.
T Consensus 153 ~~-G-~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~-v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 153 PN-G-QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHC-FVQLNLESNRIVRRVN 203 (276)
T ss_dssp TT-S-CEEEEEECS-SCCCEEEECTTSCEEEECBTTSE-EEEECTTTCCEEEEEE
T ss_pred CC-C-CEEEEEECC-CCccceeEcCCCCEEEEeCCCCe-EEEEeCcCCcEEEEec
Confidence 87 5 566666544 45667888899999999888888 9999999899887775
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-13 Score=116.94 Aligned_cols=225 Identities=12% Similarity=0.088 Sum_probs=158.9
Q ss_pred CCCeEEEeeccCCeEEEEeCCCCCCCCccccccc-CCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---
Q psy3710 152 NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHE-APLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG--- 227 (424)
Q Consensus 152 ~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~--- 227 (424)
.++.|++ ++.++.|.+||.+++ +.+..+..+. ..+.+++++|+|+.++ +.++. |..||. +++.+.++..+
T Consensus 4 ~~~~lv~-~~~~~~v~~~d~~tG-~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~-V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 4 PQHLLVG-GSGWNKIAIINKDTK-EIVWEYPLEKGWECNSVAATKAGEILF--SYSKG-AKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCEEEEE-CTTCSEEEEEETTTT-EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSE-EEEECT-TSCEEEEEECCTTC
T ss_pred CCcEEEe-eCCCCEEEEEECCCC-eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCC-EEEECC-CCCEEEEEcCCCCc
Confidence 3566776 999999999999887 6666776665 4789999999999888 34677 999999 89988888753
Q ss_pred -eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 228 -LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA------AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 228 -~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
+....+.+++..++.....++.+..+|.. ++ .+..+. .+......+++.++|+++++...++. |..||.+
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk-~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~-v~~~d~~ 154 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNMK-GE-VLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSE-VREIAPN 154 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECTT-SC-EEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTE-EEEECTT
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeCC-CC-EEEEEeccCCCCcccccccCceECCCCCEEEEecCCCE-EEEECCC
Confidence 45567788888877633337788888763 33 122211 12234556688999999999999999 9999998
Q ss_pred CCceeeeec-----------cCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceE
Q psy3710 301 SGQKLNELR-----------RDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCI 369 (424)
Q Consensus 301 ~~~~~~~~~-----------~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (424)
|+.+.++. ++|.++++++.++.|..+|..+|+.+-+...... +. . ....+..
T Consensus 155 -G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~----~~----~--------~l~~~~~ 217 (276)
T 3no2_A 155 -GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI----EG----V--------QLFFVAQ 217 (276)
T ss_dssp -SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS----BS----C--------CCSEEEE
T ss_pred -CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC----CC----c--------ccccccc
Confidence 99888764 4788888888888999999998876544321100 00 0 0011446
Q ss_pred EEEecCCCeEEEEecc--------CcEEEEEecCCcceeee
Q psy3710 370 CAFGADSNSIIVICAD--------GSYYKFMFNSKGECWRD 402 (424)
Q Consensus 370 ~~~s~~~~~l~~~~~d--------g~v~~~~~~~~~~~~~~ 402 (424)
++..++|+.+++.... +..++++++++++++-+
T Consensus 218 ~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~ 258 (276)
T 3no2_A 218 LFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQ 258 (276)
T ss_dssp EEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEE
T ss_pred ceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEE
Confidence 6777888877765311 24578888777776543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-13 Score=113.95 Aligned_cols=235 Identities=9% Similarity=-0.074 Sum_probs=146.1
Q ss_pred ceEEEEECCCCCeeE-eecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC
Q psy3710 12 GLLYAGFNQDQGCFA-CGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK 89 (424)
Q Consensus 12 ~V~~~~~s~~g~~la-~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~ 89 (424)
...+++++++|++++ +...++ |.+|+..+.........+......+++.++++.+++.. ++.|.+||...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~--------~~~i~~~d~~~ 96 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF--------NNRVVTLAAGS 96 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET--------TTEEEEECTTC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC--------CCEEEEEeCCC
Confidence 678999999998776 534444 99999765543222222234567789999888444332 47999999866
Q ss_pred CcEEEEEe--ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCC
Q psy3710 90 KQVVICLE--FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSG 164 (424)
Q Consensus 90 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg 164 (424)
+... .+. ....+.++++.+++.+.++ ++.|.+|+.. ....... ..........++++++++++++ ...++
T Consensus 97 ~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-~~~~~~~--~~~~~~~p~~i~~~~~g~l~v~-~~~~~ 171 (270)
T 1rwi_B 97 NNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAG-SKTQTVL--PFTGLNDPDGVAVDNSGNVYVT-DTDNN 171 (270)
T ss_dssp SCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTT-CCSCEEC--CCCSCCSCCCEEECTTCCEEEE-EGGGT
T ss_pred ceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECC-CceeEee--ccccCCCceeEEEeCCCCEEEE-ECCCC
Confidence 5433 232 2357899999999876665 5678888753 2222211 1111123456788899986665 66788
Q ss_pred eEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEe
Q psy3710 165 HVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPG 244 (424)
Q Consensus 165 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (424)
.|.+||.... ........+...+..++++++|..+++...++. |.+||...........
T Consensus 172 ~i~~~~~~~~-~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~~~~~~~~~~------------------- 230 (270)
T 1rwi_B 172 RVVKLEAESN-NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGSTTSTVLPF------------------- 230 (270)
T ss_dssp EEEEECTTTC-CEEECCCSSCCSEEEEEECTTCCEEEEETTTSC-EEEECTTCSCCEECCC-------------------
T ss_pred EEEEEecCCC-ceEeecccCCCCceEEEECCCCCEEEEECCCCc-EEEEcCCCCcceeecc-------------------
Confidence 9999998764 222222233366889999999977777667778 9999975543211000
Q ss_pred ecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCc
Q psy3710 245 RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ 303 (424)
Q Consensus 245 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~ 303 (424)
.+...+.+++++|+|+++++...++. |+++++...+
T Consensus 231 ----------------------~~~~~p~~i~~~~~g~l~v~~~~~~~-v~~~~~~~~~ 266 (270)
T 1rwi_B 231 ----------------------TGLNTPLAVAVDSDRTVYVADRGNDR-VVKLTSLEHH 266 (270)
T ss_dssp ----------------------CSCSCEEEEEECTTCCEEEEEGGGTE-EEEECCCGGG
T ss_pred ----------------------CCCCCceeEEECCCCCEEEEECCCCE-EEEEcCCCcc
Confidence 12234566777777766666666666 7776665443
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=6.5e-13 Score=115.72 Aligned_cols=250 Identities=16% Similarity=0.148 Sum_probs=166.9
Q ss_pred ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeec---------cCCeEEEEeCCCCCCCCcccccc----
Q psy3710 118 GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGR---------KSGHVHLVDLADPERPPLDIAAH---- 184 (424)
Q Consensus 118 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~dg~i~i~d~~~~~~~~~~~~~~---- 184 (424)
+.|.++|.. +.+.+..+.....+ .+.++||+++++++.. .++.|.+||..+. +.+..+.-.
T Consensus 59 ~~V~ViD~~-t~~v~~~I~vG~~P----~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~-~v~~~I~v~~g~r 132 (386)
T 3sjl_D 59 TQQFVIDGE-AGRVIGMIDGGFLP----NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL-LPTADIELPDAPR 132 (386)
T ss_dssp EEEEEEETT-TTEEEEEEEECSSC----EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC-CEEEEEEETTCCC
T ss_pred CEEEEEECC-CCeEEEEEECCCCC----cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC-eEEEEEECCCccc
Confidence 579999986 78888888876654 2789999999987331 4678999999986 444444321
Q ss_pred ---cCCeEEEEEccCCCEEEEEec--CCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCC
Q psy3710 185 ---EAPLSCIALNQTGTRLATASY--KGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE 259 (424)
Q Consensus 185 ---~~~v~~~~~~~~~~~l~~~~~--d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 259 (424)
......++|+|||++++.+.. ++. |.++|+.+++.+.+++.+-.. ...|.+...+++.+.||.+.+.++....
T Consensus 133 ~~~g~~P~~~a~spDGk~lyVan~~~~~~-VsVID~~t~~vv~tI~v~g~~-~~~P~g~~~~~~~~~DG~~~~v~~~~~g 210 (386)
T 3sjl_D 133 FLVGTYPWMTSLTPDGKTLLFYQFSPAPA-VGVVDLEGKAFKRMLDVPDCY-HIFPTAPDTFFMHCRDGSLAKVAFGTEG 210 (386)
T ss_dssp CCBSCCGGGEEECTTSSEEEEEECSSSCE-EEEEETTTTEEEEEEECCSEE-EEEEEETTEEEEEETTSCEEEEECCSSS
T ss_pred cccCCCCceEEEcCCCCEEEEEEcCCCCe-EEEEECCCCcEEEEEECCCcc-eeecCCCceeEEECCCCCEEEEECCCCC
Confidence 124567999999999988864 577 999999999999988754332 2335555455567778888888887632
Q ss_pred CCCee----eccCCCCeE-EEEEc-CCCCEEEEEeCCCcEEEEEECCCCc--eeee----------------------ec
Q psy3710 260 RPPLD----IAAHEAPLS-CIALN-QTGTRLATASYKGTLIRVFDTGSGQ--KLNE----------------------LR 309 (424)
Q Consensus 260 ~~~~~----~~~~~~~v~-~~~~~-~~~~~l~~~~~d~~~i~iwd~~~~~--~~~~----------------------~~ 309 (424)
..... +.....++. ..+|. ++|++++ .+.+|. |.+.|..++. .+.. ++
T Consensus 211 ~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~-V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~ 288 (386)
T 3sjl_D 211 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGK-IHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH 288 (386)
T ss_dssp CCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSE-EEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE
T ss_pred eEEEeecceeccccccccccceeEcCCCcEEE-EeCCCE-EEEEECCCCcceeecceeccccccccccccCCCcceeeEC
Confidence 22111 111112222 24664 6775555 555788 9999997653 2222 23
Q ss_pred cCCcEEEEEeC----------CCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCC-e
Q psy3710 310 RDSSYLCVSSD----------HGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSN-S 378 (424)
Q Consensus 310 ~~~~~l~~~~~----------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~ 378 (424)
++++.+..... .+.|.++|+.+++.+.+...- ..+..+++++|++ +
T Consensus 289 ~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-----------------------~~~~~lavs~D~~~~ 345 (386)
T 3sjl_D 289 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-----------------------HEIDSINVSQDEKPL 345 (386)
T ss_dssp TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-----------------------EEECEEEECSSSSCE
T ss_pred CCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-----------------------CCcceEEECCCCCeE
Confidence 45666655432 246888999887766543321 1345789999997 6
Q ss_pred EEEEe-ccCcEEEEEecCCcceee
Q psy3710 379 IIVIC-ADGSYYKFMFNSKGECWR 401 (424)
Q Consensus 379 l~~~~-~dg~v~~~~~~~~~~~~~ 401 (424)
|++.. .++.|.++|.. +++.++
T Consensus 346 ly~tn~~~~~VsViD~~-t~k~~~ 368 (386)
T 3sjl_D 346 LYALSTGDKTLYIHDAE-SGEELR 368 (386)
T ss_dssp EEEEETTTTEEEEEETT-TCCEEE
T ss_pred EEEEcCCCCeEEEEECC-CCcEEE
Confidence 77654 48999999987 555555
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-13 Score=133.03 Aligned_cols=277 Identities=10% Similarity=-0.024 Sum_probs=171.0
Q ss_pred CCCCCeeEeec-CCe---EEEEeCC-----cCcccccc------cccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEE
Q psy3710 19 NQDQGCFACGM-EDG---FRIYNCD-----PLKEKERQ------DFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVM 83 (424)
Q Consensus 19 s~~g~~la~g~-~~~---i~iw~~~-----~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~ 83 (424)
+|+|++++... +.+ -.+|..+ .++..... ..+...+..++|+|+++++++.+...+. ...+|+
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~--e~~~i~ 192 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGS--DWRTVK 192 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTC--SEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCC--ceEEEE
Confidence 48999888443 222 4455543 22221111 1122367789999999999987632100 114799
Q ss_pred EEECCCCcEEEEEeecCCeEEEEecCCceEEEe---ec--------------cEEEEeecCCCce--eEEEeeCCCCCee
Q psy3710 84 IWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL---EG--------------LIKVYTFIQCPQQ--LHVFETNPNPKGL 144 (424)
Q Consensus 84 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~--------------~i~v~~~~~~~~~--~~~~~~~~~~~~~ 144 (424)
+||+.+++.+........+..++|+|| ..++. ++ .|++|++. +... ...+.....+...
T Consensus 193 v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lg-t~~~~~~lv~~~~~~~~~~ 270 (741)
T 1yr2_A 193 FVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLG-TPQSADQPVFATPELPKRG 270 (741)
T ss_dssp EEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETT-SCGGGCEEEECCTTCTTCE
T ss_pred EEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECC-CCchhCEEEeccCCCCeEE
Confidence 999999988664323323467899999 66654 33 28888875 3332 2333333333347
Q ss_pred EEEeecCCCCeEEEeecc----CCeEEEEeCCCCCCC-CcccccccCCeEEEEEccCCCEEEEEec----CCcEEEEEEC
Q psy3710 145 CVLCPNSNNSLLAFPGRK----SGHVHLVDLADPERP-PLDIAAHEAPLSCIALNQTGTRLATASY----KGTLIRVFDT 215 (424)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~----dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~~i~iwd~ 215 (424)
..+.++|||++|++++.. ...|++||+.++... ...+..+...+.... +|+|+.|+..+. ++. |.+||+
T Consensus 271 ~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~-l~~~d~ 348 (741)
T 1yr2_A 271 HGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKK-IVRVDL 348 (741)
T ss_dssp EEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCE-EEEEEC
T ss_pred EEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCE-EEEEeC
Confidence 788999999999883322 348999999874223 555655655555554 488998887765 456 999999
Q ss_pred CCc--ceeeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeecc-CCCCeEEEEEcCCCCEEEEE--
Q psy3710 216 GSG--QKLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAA-HEAPLSCIALNQTGTRLATA-- 287 (424)
Q Consensus 216 ~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-- 287 (424)
.++ +....+... +..+++ .+..++++...++..++|.+.........+.. +...+..++++|+++.|+..
T Consensus 349 ~~~~~~~~~l~~~~~~~l~~~~~--~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s 426 (741)
T 1yr2_A 349 SGSTPRFDTVVPESKDNLESVGI--AGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFS 426 (741)
T ss_dssp SSSSCEEEEEECCCSSEEEEEEE--EBTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEE
T ss_pred CCCccccEEEecCCCCeEEEEEE--ECCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEc
Confidence 875 222223222 222333 36778888889998777755422222333333 35678899999998866633
Q ss_pred --eCCCcEEEEEECCCCce
Q psy3710 288 --SYKGTLIRVFDTGSGQK 304 (424)
Q Consensus 288 --~~d~~~i~iwd~~~~~~ 304 (424)
...++ |++||+.+++.
T Consensus 427 s~~~P~~-i~~~d~~tg~~ 444 (741)
T 1yr2_A 427 SFTQPAT-VLALDPATAKT 444 (741)
T ss_dssp ETTEEEE-EEEEETTTTEE
T ss_pred CCCCCCE-EEEEECCCCcE
Confidence 23466 99999988763
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=9.8e-12 Score=106.80 Aligned_cols=231 Identities=12% Similarity=0.025 Sum_probs=157.4
Q ss_pred CCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe---ecCCeEEEEecCCceEEEe---eccEEEEe
Q psy3710 51 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE---FNAPVKGVRLRRDKIVVVL---EGLIKVYT 124 (424)
Q Consensus 51 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---~~~i~v~~ 124 (424)
...+..+.+.++++..+... .++.|.+||.. ++.. .+. ....+.++++.+++.+.++ ++.|..|+
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~-------~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 84 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQH-------KANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRIT 84 (299)
T ss_dssp SCCEEEEEECTTSCEEEEET-------TTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCccceEECCCCCEEEEec-------CCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEEC
Confidence 45678888999888666544 25899999987 5543 333 2467899999999866665 46788888
Q ss_pred ecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEe
Q psy3710 125 FIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS 204 (424)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 204 (424)
.. ++ ...+...........+++++++.++++ ...++.|..||. ++.........+...+..+++.++|+.+++..
T Consensus 85 ~~--g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~-~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 159 (299)
T 2z2n_A 85 KK--GI-IKEYTLPNPDSAPYGITEGPNGDIWFT-EMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTEN 159 (299)
T ss_dssp TT--SC-EEEEECSSTTCCEEEEEECTTSCEEEE-ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEET
T ss_pred CC--Cc-EEEEeCCCcCCCceeeEECCCCCEEEE-ecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeC
Confidence 64 22 333332222345778888999887776 667889999998 43121112223446789999999998777776
Q ss_pred cCCcEEEEEECCCcceeeE-Eec---ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCC
Q psy3710 205 YKGTLIRVFDTGSGQKLNE-LRR---GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT 280 (424)
Q Consensus 205 ~d~~~i~iwd~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 280 (424)
.++. |..||. +++.... ... ....+++++++. +.++...++.|..||. ++.........+...+.+++++++
T Consensus 160 ~~~~-i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~ 235 (299)
T 2z2n_A 160 QNNA-IGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAG 235 (299)
T ss_dssp TTTE-EEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECST
T ss_pred CCCE-EEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCC
Confidence 6778 999998 6654432 221 255678888876 4554556889999998 544222223345577899999999
Q ss_pred CCEEEEEeCCCcEEEEEECC
Q psy3710 281 GTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 281 ~~~l~~~~~d~~~i~iwd~~ 300 (424)
|+.+++...++. |..||..
T Consensus 236 g~l~v~~~~~~~-i~~~d~~ 254 (299)
T 2z2n_A 236 IDLWFTEWGANK-IGRLTSN 254 (299)
T ss_dssp TCEEEEETTTTE-EEEEETT
T ss_pred CCEEEeccCCce-EEEECCC
Confidence 987666656777 9999983
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-13 Score=119.10 Aligned_cols=276 Identities=13% Similarity=0.074 Sum_probs=182.7
Q ss_pred CCCCeeEeecC------CeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCC---CcCCCeEEEEECCCC
Q psy3710 20 QDQGCFACGME------DGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHP---KYPNNRVMIWDDLKK 90 (424)
Q Consensus 20 ~~g~~la~g~~------~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~---~~~d~~i~iwd~~~~ 90 (424)
|+++++.+... +.|.++|..+.+.+........+ .+.++|+++.++++...... .-.++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 56666664433 24999999999887665543444 79999999998877521000 001478999999999
Q ss_pred cEEEEEeec--------CCeEEEEecCCceEEEe-----eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEE
Q psy3710 91 QVVICLEFN--------APVKGVRLRRDKIVVVL-----EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLA 157 (424)
Q Consensus 91 ~~~~~~~~~--------~~v~~~~~~~~~~~~~~-----~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (424)
+.+.++... .....+.++||+..+.. ++.|.++|+. +.+.+..+.... .. ...|++...+
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~-t~kvv~~I~v~g----~~--~~~p~g~~~~ 232 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLE-GKTFDRMLDVPD----CY--HIFPASPTVF 232 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETT-TTEEEEEEECCS----EE--EEEEEETTEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECC-CCeEEEEEEcCC----ce--eeccCCCcEE
Confidence 999988753 34678999999966553 3679999996 777777776532 11 1222232222
Q ss_pred EeeccCCeEEEEeCCCCCCCCc----ccccccCCe-EEEEEccCCCEEEEEecCCcEEEEEECCCccee--eEE------
Q psy3710 158 FPGRKSGHVHLVDLADPERPPL----DIAAHEAPL-SCIALNQTGTRLATASYKGTLIRVFDTGSGQKL--NEL------ 224 (424)
Q Consensus 158 ~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~--~~~------ 224 (424)
++.+.||.+.+.+..++ +... .+.....++ ..+.+.+++..++..+..+. +.+.|....... ..+
T Consensus 233 v~~~~dG~~~~V~~~~~-~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~-V~ViD~~~~~~~v~~~~~~~~~~ 310 (426)
T 3c75_H 233 YMNCRDGSLARVDFADG-ETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGK-IFQADLTAEGATFRAPIEALTEA 310 (426)
T ss_dssp EEEETTSSEEEEECCTT-CCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSE-EEEEEECSSCEEECCCEESSCTT
T ss_pred EEEcCCCCEEEEECCCC-cEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCc-EEEEeccCCceEEeeeeeecccc
Confidence 22556677776676432 2211 111111121 23567889888888788888 999998655321 111
Q ss_pred -------ecceeeeeecCCCCeEEEEeec---------CCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCC-EEEEE
Q psy3710 225 -------RRGLCVLCPNSNNSLLAFPGRK---------SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT-RLATA 287 (424)
Q Consensus 225 -------~~~~~~~~~~~~~~~~~~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~ 287 (424)
+.+...+++++++..++++... ++.|.++|..+.+.. ..+.. ......++|+|||+ +++++
T Consensus 311 ~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv-~~I~v-g~~P~gia~spDg~~~lyv~ 388 (426)
T 3c75_H 311 ERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI-NKIEL-GHEIDSINVSQDAEPLLYAL 388 (426)
T ss_dssp TGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE-EEEEE-EEEECEEEECCSSSCEEEEE
T ss_pred ccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEE-EEEEC-CCCcCeEEEccCCCEEEEEE
Confidence 1223347889999988886432 357999999987743 33321 22578999999999 88888
Q ss_pred e-CCCcEEEEEECCCCceeeeec
Q psy3710 288 S-YKGTLIRVFDTGSGQKLNELR 309 (424)
Q Consensus 288 ~-~d~~~i~iwd~~~~~~~~~~~ 309 (424)
. .++. |.++|+.+++.+.++.
T Consensus 389 n~~s~~-VsVID~~t~kvv~tI~ 410 (426)
T 3c75_H 389 SAGTQT-LHIYDAATGEELRSVD 410 (426)
T ss_dssp ETTTTE-EEEEETTTCCEEEEEC
T ss_pred cCCCCe-EEEEECCCCCEEEEec
Confidence 8 4788 9999999999998873
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-13 Score=119.10 Aligned_cols=252 Identities=17% Similarity=0.116 Sum_probs=174.1
Q ss_pred ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeec---------cCCeEEEEeCCCCCCCCcccccc----
Q psy3710 118 GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGR---------KSGHVHLVDLADPERPPLDIAAH---- 184 (424)
Q Consensus 118 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~dg~i~i~d~~~~~~~~~~~~~~---- 184 (424)
+.|.++|.. +.+.+..+.....+ .+.++||+++++++.. .++.|.++|..+. +.+..+.-.
T Consensus 99 ~~VsVID~~-t~~vv~~I~vG~~P----gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~-~vv~~I~v~g~~r 172 (426)
T 3c75_H 99 TQQFVIDGS-TGRILGMTDGGFLP----HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF-LPIADIELPDAPR 172 (426)
T ss_dssp EEEEEEETT-TTEEEEEEEECSSC----EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC-CEEEEEEETTCCC
T ss_pred CeEEEEECC-CCEEEEEEECCCCC----ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC-cEEEEEECCCccc
Confidence 689999996 88888888876654 5788999999988332 4678999999986 444444311
Q ss_pred ---cCCeEEEEEccCCCEEEEEec--CCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCC
Q psy3710 185 ---EAPLSCIALNQTGTRLATASY--KGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE 259 (424)
Q Consensus 185 ---~~~v~~~~~~~~~~~l~~~~~--d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 259 (424)
......++|+|||++++.+.. ++. |.+.|+.+++.+.+++.+-. ....|.+...+++.+.||.+.+.+..+++
T Consensus 173 ~~~g~~P~~~~~spDGk~lyV~n~~~~~~-VsVID~~t~kvv~~I~v~g~-~~~~p~g~~~~v~~~~dG~~~~V~~~~~~ 250 (426)
T 3c75_H 173 FLVGTYQWMNALTPDNKNLLFYQFSPAPA-VGVVDLEGKTFDRMLDVPDC-YHIFPASPTVFYMNCRDGSLARVDFADGE 250 (426)
T ss_dssp CCBSCCGGGSEECTTSSEEEEEECSSSCE-EEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred cccCCCcceEEEcCCCCEEEEEecCCCCe-EEEEECCCCeEEEEEEcCCc-eeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence 133567899999999998874 467 99999999999988875432 33445555566667778888888884433
Q ss_pred CCC---eeeccCCCCe-EEEEEcCCCCEEEEEeCCCcEEEEEECCCCcee------------------------eeeccC
Q psy3710 260 RPP---LDIAAHEAPL-SCIALNQTGTRLATASYKGTLIRVFDTGSGQKL------------------------NELRRD 311 (424)
Q Consensus 260 ~~~---~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~------------------------~~~~~~ 311 (424)
... ..+.....++ ..+.+.+++..++..+..+. +.+.|...+... ..++++
T Consensus 251 v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~-V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d 329 (426)
T 3c75_H 251 TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGK-IFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQ 329 (426)
T ss_dssp CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSE-EEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGG
T ss_pred EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCc-EEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCC
Confidence 211 0111111221 23578899888887788888 999998543210 235667
Q ss_pred CcEEEEEeC----------CCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCC-eEE
Q psy3710 312 SSYLCVSSD----------HGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSN-SII 380 (424)
Q Consensus 312 ~~~l~~~~~----------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~ 380 (424)
++.+.+... ++.|.++|+.+.+.+.++..-. ....++|+|||+ +|+
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-----------------------~P~gia~spDg~~~ly 386 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-----------------------EIDSINVSQDAEPLLY 386 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-----------------------EECEEEECCSSSCEEE
T ss_pred CCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-----------------------CcCeEEEccCCCEEEE
Confidence 676665532 3579999999987765543211 134789999999 888
Q ss_pred EEe-ccCcEEEEEecCCcceeee
Q psy3710 381 VIC-ADGSYYKFMFNSKGECWRD 402 (424)
Q Consensus 381 ~~~-~dg~v~~~~~~~~~~~~~~ 402 (424)
+.. .++.|.++|.. +.+.++.
T Consensus 387 v~n~~s~~VsVID~~-t~kvv~t 408 (426)
T 3c75_H 387 ALSAGTQTLHIYDAA-TGEELRS 408 (426)
T ss_dssp EEETTTTEEEEEETT-TCCEEEE
T ss_pred EEcCCCCeEEEEECC-CCCEEEE
Confidence 888 59999999997 5555543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.5e-14 Score=134.20 Aligned_cols=247 Identities=12% Similarity=0.046 Sum_probs=154.4
Q ss_pred eecCCCCeEEEeeccCC----eEEEEeCCCCCCCCccc------ccccCCeEEEEEccCCCEEEE-----EecCCcEEEE
Q psy3710 148 CPNSNNSLLAFPGRKSG----HVHLVDLADPERPPLDI------AAHEAPLSCIALNQTGTRLAT-----ASYKGTLIRV 212 (424)
Q Consensus 148 ~~~~~~~~l~~~~~~dg----~i~i~d~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~-----~~~d~~~i~i 212 (424)
.++|+|++++.+....+ .+...+...+ .....+ .+|...+..++|||||++|+. |+.+.. |++
T Consensus 74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~-i~v 151 (695)
T 2bkl_A 74 TPSRRNGRFFYVRTHKDKEKAILYWRQGESG-QEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAV-LHV 151 (695)
T ss_dssp CCEEETTEEEEEEECTTCSSCEEEEEESTTS-CCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCE-EEE
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCCC-CcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEE-EEE
Confidence 34578888887333332 3444444333 222221 135557899999999999984 334467 999
Q ss_pred EECCCccee-eEEecce--eeeeecCCCCeEEEEeecCCe-------------EEEEeCCCCCCC---CeeeccCCCCeE
Q psy3710 213 FDTGSGQKL-NELRRGL--CVLCPNSNNSLLAFPGRKSGH-------------VHLVDLADPERP---PLDIAAHEAPLS 273 (424)
Q Consensus 213 wd~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~dg~-------------i~i~d~~~~~~~---~~~~~~~~~~v~ 273 (424)
||+.+++.+ ....... ..++|+|+++.++++. .+.. |++|++.++... +.....|...+.
T Consensus 152 ~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~-~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~ 230 (695)
T 2bkl_A 152 IDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEW-LPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL 230 (695)
T ss_dssp EETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEE-CCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE
T ss_pred EECCCCCCcCCcccCcccccceEEecCCCEEEEEE-ecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE
Confidence 999998865 2211222 6789999999998854 4333 999999887532 112234556789
Q ss_pred EEEEcCCCCEEEEEeCCC----cEEEEEECCCCceeee----------eccCCcEEEEEeC----CCcEEEEEccccccc
Q psy3710 274 CIALNQTGTRLATASYKG----TLIRVFDTGSGQKLNE----------LRRDSSYLCVSSD----HGTVHVFSVDEAQKI 335 (424)
Q Consensus 274 ~~~~~~~~~~l~~~~~d~----~~i~iwd~~~~~~~~~----------~~~~~~~l~~~~~----d~~i~iw~~~~~~~~ 335 (424)
.+.|+|||++|+.++.++ . |.+|+..+++.... +.++|+ ++..+. ++.|.+||+.+++..
T Consensus 231 ~~~~SpDG~~l~~~~~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~ 308 (695)
T 2bkl_A 231 QSDLSRDGKYLFVYILRGWSEND-VYWKRPGEKDFRLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARA 308 (695)
T ss_dssp EEEECTTSCCEEEEEEETTTEEE-EEEECTTCSSCEEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGG
T ss_pred EEEECCCCCEEEEEEeCCCCceE-EEEEcCCCCceEEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCcc
Confidence 999999999998888766 5 77887655543221 224666 444443 578999998775421
Q ss_pred cccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCCcceeee------eehhhhe
Q psy3710 336 NKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWRD------VYIQFLE 409 (424)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~~~~------~~~~~~~ 409 (424)
.- . ...+. .+...+..++|+ ++..+++...|+..++|.++..++..+. .....+.
T Consensus 309 ~~-~-----~l~~~------------~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~ 369 (695)
T 2bkl_A 309 SW-K-----EIVPE------------DSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLM 369 (695)
T ss_dssp GC-E-----EEECC------------CSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCB
T ss_pred CC-e-----EEecC------------CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEee
Confidence 00 0 00000 011234556777 6778888888999999988754543332 2234456
Q ss_pred ecCCCceee
Q psy3710 410 MTNDSNLLS 418 (424)
Q Consensus 410 ~~~d~~~l~ 418 (424)
++||++.++
T Consensus 370 ~s~d~~~l~ 378 (695)
T 2bkl_A 370 GLEDLDDAY 378 (695)
T ss_dssp SCTTCSEEE
T ss_pred cCCCCCEEE
Confidence 788887666
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-11 Score=106.34 Aligned_cols=270 Identities=9% Similarity=-0.001 Sum_probs=177.4
Q ss_pred ccCCceEEEEECCCCCeeEeecCCe-EEEEeCCcCccccc-ccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEE
Q psy3710 8 TYKNGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKER-QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIW 85 (424)
Q Consensus 8 ~h~~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iw 85 (424)
.....+.+++++++|+++++...++ |.+|+.+ ++.... .......+..+.+.++++..++.. .++.|..+
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-------~~~~v~~~ 88 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTEN-------GANKIGKL 88 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEET-------TTTEEEEE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEec-------CCCeEEEE
Confidence 3456789999999998877775544 9999977 443221 111235677788888887655443 25789999
Q ss_pred ECCCCcEEEEEe---ecCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEe
Q psy3710 86 DDLKKQVVICLE---FNAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFP 159 (424)
Q Consensus 86 d~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (424)
|.. ++.. .+. ....+.++++.+++.+.++ ++.|..++.. ++.. .+...........+++++++++.++
T Consensus 89 d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~- 162 (300)
T 2qc5_A 89 SKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD--GTIY-EYDLPNKGSYPAFITLGSDNALWFT- 162 (300)
T ss_dssp CTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT--SCEE-EEECSSTTCCEEEEEECTTSSEEEE-
T ss_pred CCC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC--CCEE-EccCCCCCCCceeEEECCCCCEEEE-
Confidence 987 6653 333 2357899999998866655 4678888864 3332 2322222344678888999986655
Q ss_pred eccCCeEEEEeCCCCCCCCc-ccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeE-Ee---cceeeeeec
Q psy3710 160 GRKSGHVHLVDLADPERPPL-DIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE-LR---RGLCVLCPN 234 (424)
Q Consensus 160 ~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~-~~---~~~~~~~~~ 234 (424)
...++.|..+|. ++ .... ....+...+..+++.++|+..++....+. |..+|. +++.... .. .....++++
T Consensus 163 ~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~~~~~~~~~~~~~~i~~d 238 (300)
T 2qc5_A 163 ENQNNSIGRITN-TG-KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK-IGRITT-TGEISEYDIPTPNARPHAITAG 238 (300)
T ss_dssp ETTTTEEEEECT-TC-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred ecCCCeEEEECC-CC-cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCE-EEEEcC-CCcEEEEECCCCCCCceEEEEC
Confidence 666789999998 33 2221 12233456889999999987776666777 999998 4543332 22 125667888
Q ss_pred CCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 235 SNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 235 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
+++. +.++...++.|..||.. +......+......+.+++++++|+++++.. . . |..+|.+
T Consensus 239 ~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~-i~~~~p~ 299 (300)
T 2qc5_A 239 KNSE-IWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-K-IGKLNLN 299 (300)
T ss_dssp STTC-EEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-E-EEEEEEC
T ss_pred CCCC-EEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc-C-c-eEEeCCC
Confidence 8876 55545567899999983 3321122233456688999999998666655 4 6 8777754
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-12 Score=108.70 Aligned_cols=223 Identities=10% Similarity=0.021 Sum_probs=151.2
Q ss_pred CeEEEEecCCceEEE-e---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCC
Q psy3710 101 PVKGVRLRRDKIVVV-L---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER 176 (424)
Q Consensus 101 ~v~~~~~~~~~~~~~-~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~ 176 (424)
...++++++++.+.+ + ++.|.+|+.. ... ...+. .........++++++++++++ .. ++.|.+||....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~-~~~-~~~~~-~~~~~~p~~i~~~~~g~l~v~-~~-~~~i~~~d~~~~-- 97 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATG-STG-TTVLP-FNGLYQPQGLAVDGAGTVYVT-DF-NNRVVTLAAGSN-- 97 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-------EECC-CCSCCSCCCEEECTTCCEEEE-ET-TTEEEEECTTCS--
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCC-Ccc-cceEe-eCCcCCcceeEECCCCCEEEE-cC-CCEEEEEeCCCc--
Confidence 778999999886665 4 5789999864 222 22221 111123456788889886654 44 889999998764
Q ss_pred CCcccc-cccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEec---ceeeeeecCCCCeEEEEeecCCeEEE
Q psy3710 177 PPLDIA-AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR---GLCVLCPNSNNSLLAFPGRKSGHVHL 252 (424)
Q Consensus 177 ~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~dg~i~i 252 (424)
....+. .....+..++++++|+.+++...++. |.+|+..+......... ....+++++++. ++++...++.|.+
T Consensus 98 ~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~ 175 (270)
T 1rwi_B 98 NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNR-VVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVK 175 (270)
T ss_dssp CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTE-EEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEE
T ss_pred eEeeeecCCcCCCcceEECCCCCEEEEECCCCE-EEEEECCCceeEeeccccCCCceeEEEeCCCC-EEEEECCCCEEEE
Confidence 223232 23357899999999987777777788 99998665543322211 356688888886 5565667889999
Q ss_pred EeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceee------------eeccCCcEEEEEeC
Q psy3710 253 VDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN------------ELRRDSSYLCVSSD 320 (424)
Q Consensus 253 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~------------~~~~~~~~l~~~~~ 320 (424)
||....... .....+...+.+++++++|.++++...++. |.+|+........ .+.++|+++++...
T Consensus 176 ~~~~~~~~~-~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 176 LEAESNNQV-VLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp ECTTTCCEE-ECCCSSCCSEEEEEECTTCCEEEEETTTSC-EEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred EecCCCceE-eecccCCCCceEEEECCCCCEEEEECCCCc-EEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECC
Confidence 998765421 111233367899999999977777777888 9999987643221 24578888888888
Q ss_pred CCcEEEEEcccccc
Q psy3710 321 HGTVHVFSVDEAQK 334 (424)
Q Consensus 321 d~~i~iw~~~~~~~ 334 (424)
++.|+++++...+.
T Consensus 254 ~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 254 NDRVVKLTSLEHHH 267 (270)
T ss_dssp GTEEEEECCCGGGS
T ss_pred CCEEEEEcCCCccc
Confidence 99999999887543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.6e-11 Score=106.99 Aligned_cols=283 Identities=12% Similarity=0.101 Sum_probs=179.9
Q ss_pred cCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEee----------cCCeEE-EEecCCceEEEe-eccEEEEeecCCC
Q psy3710 62 RCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEF----------NAPVKG-VRLRRDKIVVVL-EGLIKVYTFIQCP 129 (424)
Q Consensus 62 ~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~----------~~~v~~-~~~~~~~~~~~~-~~~i~v~~~~~~~ 129 (424)
.++.+.+.+ .++.|..+|.++|+.+..+.. ...+.+ +....+..++.+ ++.|..+|.+ ++
T Consensus 52 ~~~~v~~~~-------~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~-tG 123 (376)
T 3q7m_A 52 ADNVVYAAD-------RAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTS-DG 123 (376)
T ss_dssp ETTEEEEEC-------TTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETT-TC
T ss_pred ECCEEEEEc-------CCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECC-CC
Confidence 456666665 368999999999999887774 223333 344444455555 7889999986 77
Q ss_pred ceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCe-----EEEEEccCCCEEEEEe
Q psy3710 130 QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPL-----SCIALNQTGTRLATAS 204 (424)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~ 204 (424)
+.+..............+ .+..+++ ++.++.|..+|..++ +.+.......... ...... +..++.+.
T Consensus 124 ~~~W~~~~~~~~~~~p~~----~~~~v~v-~~~~g~l~~~d~~tG-~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~ 195 (376)
T 3q7m_A 124 TVAWQTKVAGEALSRPVV----SDGLVLI-HTSNGQLQALNEADG-AVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGG 195 (376)
T ss_dssp CEEEEEECSSCCCSCCEE----ETTEEEE-ECTTSEEEEEETTTC-CEEEEEECCC-----CCCCCCEEE--TTEEEECC
T ss_pred CEEEEEeCCCceEcCCEE----ECCEEEE-EcCCCeEEEEECCCC-cEEEEEeCCCCceeecCCCCcEEE--CCEEEEEc
Confidence 777666554322111112 1345666 888999999999886 4333332211110 111222 35778888
Q ss_pred cCCcEEEEEECCCcceeeEEecceee----------eeecC--CCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCe
Q psy3710 205 YKGTLIRVFDTGSGQKLNELRRGLCV----------LCPNS--NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPL 272 (424)
Q Consensus 205 ~d~~~i~iwd~~~~~~~~~~~~~~~~----------~~~~~--~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 272 (424)
.++. +..+|..+++.+......... +...| .+..+++ ++.++.+..+|..+++.... . .....
T Consensus 196 ~~g~-l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~-~~~~g~l~~~d~~tG~~~w~-~--~~~~~ 270 (376)
T 3q7m_A 196 DNGR-VSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFA-LAYNGNLTALDLRSGQIMWK-R--ELGSV 270 (376)
T ss_dssp TTTE-EEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEE-ECTTSCEEEEETTTCCEEEE-E--CCCCE
T ss_pred CCCE-EEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEE-EecCcEEEEEECCCCcEEee-c--cCCCC
Confidence 8898 999999999988776533100 11111 2344444 77899999999988764322 1 12234
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeecc-----------CCcEEEEEeCCCcEEEEEccccccccccccc
Q psy3710 273 SCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR-----------DSSYLCVSSDHGTVHVFSVDEAQKINKQSSL 341 (424)
Q Consensus 273 ~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-----------~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~ 341 (424)
..+.. ++..++.++.++. +..+|..+|+.+..... .+..|+.++.+|.|+++|..+++.+.+...
T Consensus 271 ~~~~~--~~~~l~~~~~~g~-l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~- 346 (376)
T 3q7m_A 271 NDFIV--DGNRIYLVDQNDR-VMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKV- 346 (376)
T ss_dssp EEEEE--ETTEEEEEETTCC-EEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC-
T ss_pred CCceE--ECCEEEEEcCCCe-EEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEec-
Confidence 44444 4567888888988 99999999998877641 346788888999999999999876433211
Q ss_pred eeeeccCccccCCceeeEEeecCCCce-EEEEecCCCeEEEEeccCcEEEEE
Q psy3710 342 ASASFLPKYFSSSWSFCKFQIPSDPPC-ICAFGADSNSIIVICADGSYYKFM 392 (424)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~l~~~~~dg~v~~~~ 392 (424)
....+. .... .+..|++++.+|.|+.|+
T Consensus 347 ---------------------~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 347 ---------------------DSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp ---------------------CTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred ---------------------CCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 011111 1111 256888999999999986
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-11 Score=109.02 Aligned_cols=289 Identities=11% Similarity=0.065 Sum_probs=176.2
Q ss_pred CCeeEeecCCe-EEEEeCCcCcccccccccC--------CCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcE
Q psy3710 22 QGCFACGMEDG-FRIYNCDPLKEKERQDFTD--------GGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQV 92 (424)
Q Consensus 22 g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~ 92 (424)
+..+.+++.++ |..+|.++++.+....... ..........++..+++.+ .++.|..+|.++|+.
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-------~~g~l~a~d~~tG~~ 125 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGS-------EKAQVYALNTSDGTV 125 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEE-------TTSEEEEEETTTCCE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEc-------CCCEEEEEECCCCCE
Confidence 44566666555 9999999888765444321 1111222333456666665 478999999999999
Q ss_pred EEEEeecCCeE-EEEecCCceEEEe-eccEEEEeecCCCceeEEEeeCCCCCe---eEEEeecCCCCeEEEeeccCCeEE
Q psy3710 93 VICLEFNAPVK-GVRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNPKG---LCVLCPNSNNSLLAFPGRKSGHVH 167 (424)
Q Consensus 93 ~~~~~~~~~v~-~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~dg~i~ 167 (424)
+........+. ......+..++.+ ++.+..+|.. +++.+........... ...... .+..+++ +..++.+.
T Consensus 126 ~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~-tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~-g~~~g~l~ 201 (376)
T 3q7m_A 126 AWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEA-DGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVV-GGDNGRVS 201 (376)
T ss_dssp EEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETT-TCCEEEEEECCC-----CCCCCCEE--ETTEEEE-CCTTTEEE
T ss_pred EEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECC-CCcEEEEEeCCCCceeecCCCCcEE--ECCEEEE-EcCCCEEE
Confidence 98887543332 2233333344444 7889999986 7777766654332110 001111 1345666 88899999
Q ss_pred EEeCCCCCCCCcccccccC-------CeEEEEEcc--CCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCC
Q psy3710 168 LVDLADPERPPLDIAAHEA-------PLSCIALNQ--TGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNS 238 (424)
Q Consensus 168 i~d~~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 238 (424)
.+|..++ +.......... .+..+.-.| .+..++.++.++. +..+|.++++.+........ ......+.
T Consensus 202 ~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~-l~~~d~~tG~~~w~~~~~~~-~~~~~~~~ 278 (376)
T 3q7m_A 202 AVLMEQG-QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN-LTALDLRSGQIMWKRELGSV-NDFIVDGN 278 (376)
T ss_dssp EEETTTC-CEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC-EEEEETTTCCEEEEECCCCE-EEEEEETT
T ss_pred EEECCCC-cEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE-EEEEECCCCcEEeeccCCCC-CCceEECC
Confidence 9999876 33333221100 000011111 2467788888888 99999999988876654321 11222345
Q ss_pred eEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeecc--------
Q psy3710 239 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR-------- 310 (424)
Q Consensus 239 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-------- 310 (424)
.+++ ++.++.+..+|..+++.....-......+..... .+..|+.++.+|. +.++|.++|+.+..+..
T Consensus 279 ~l~~-~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~-l~~~d~~tG~~~~~~~~~~~~~~~~ 354 (376)
T 3q7m_A 279 RIYL-VDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGY-LHWINVEDGRFVAQQKVDSSGFQTE 354 (376)
T ss_dssp EEEE-EETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSE-EEEEETTTCCEEEEEECCTTCBCSC
T ss_pred EEEE-EcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCe-EEEEECCCCcEEEEEecCCCcceeC
Confidence 5554 7789999999999877422221111222222333 2468888999999 99999999998876643
Q ss_pred ---CCcEEEEEeCCCcEEEEE
Q psy3710 311 ---DSSYLCVSSDHGTVHVFS 328 (424)
Q Consensus 311 ---~~~~l~~~~~d~~i~iw~ 328 (424)
.+..|+.++.+|.|+.|+
T Consensus 355 ~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 355 PVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CEEETTEEEEEBTTSCEEEEE
T ss_pred CEEECCEEEEEeCCCEEEEEe
Confidence 245677888888888886
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.8e-11 Score=101.17 Aligned_cols=260 Identities=12% Similarity=0.072 Sum_probs=165.9
Q ss_pred cCCeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCC
Q psy3710 99 NAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE 175 (424)
Q Consensus 99 ~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~ 175 (424)
...+.++++.+++.+.++ ++.|.+|+.. ++ ...+........+..+++++++.+.++ ...++.|..||.. +.
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~--~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~-~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS--GR-IKEFEVPTPDAKVMCLIVSSLGDIWFT-ENGANKIGKLSKK-GG 93 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT--SC-EEEEECSSTTCCEEEEEECTTSCEEEE-ETTTTEEEEECTT-SC
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC--Cc-eEEEECCCCCCcceeEEECCCCCEEEE-ecCCCeEEEECCC-CC
Confidence 357889999999866655 4789999864 33 223333222345778888999987775 6667899999987 32
Q ss_pred CCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceee-EEe---cceeeeeecCCCCeEEEEeecCCeEE
Q psy3710 176 RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN-ELR---RGLCVLCPNSNNSLLAFPGRKSGHVH 251 (424)
Q Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~dg~i~ 251 (424)
............+..+++.++|+.+++...++. |..+|.. ++... .+. .....+++.+++. ++++...++.|.
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~ 170 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDR-IGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIG 170 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEE
T ss_pred eEEecCCCCCCCCccceECCCCCEEEEccCCCe-EEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEecCCCeEE
Confidence 211122223467899999999988877766778 9999987 55432 222 2256678888877 555455678999
Q ss_pred EEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeee-------------eccCCcEEEEE
Q psy3710 252 LVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE-------------LRRDSSYLCVS 318 (424)
Q Consensus 252 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~-------------~~~~~~~l~~~ 318 (424)
.+|. +++........+...+..++++++|++.++....+. |.+|+. +++.... +.++|++.++.
T Consensus 171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 171 RITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK-IGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred EECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCE-EEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence 9998 433221222234567899999999987777666777 999998 4443221 23566666665
Q ss_pred eCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEe
Q psy3710 319 SDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMF 393 (424)
Q Consensus 319 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~ 393 (424)
..++.|..|+. +++.. ... .+ .....+..++++++|+..+ ++.. .|..++.
T Consensus 248 ~~~~~i~~~~~-~g~~~-~~~-------~~-------------~~~~~~~~i~~~~~g~l~v-~~~~-~i~~~~p 298 (300)
T 2qc5_A 248 WGANQIGRITN-DNTIQ-EYQ-------LQ-------------TENAEPHGITFGKDGSVWF-ALKC-KIGKLNL 298 (300)
T ss_dssp TTTTEEEEECT-TSCEE-EEE-------CC-------------STTCCCCCEEECTTSCEEE-ECSS-EEEEEEE
T ss_pred cCCCeEEEECC-CCcEE-EEE-------CC-------------ccCCccceeEeCCCCCEEE-EccC-ceEEeCC
Confidence 55678888887 33211 000 00 0123456788999987544 4444 5655554
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.53 E-value=8.8e-12 Score=107.96 Aligned_cols=235 Identities=10% Similarity=0.011 Sum_probs=157.1
Q ss_pred CCceEEEEECCCCCeeEe-------ecCCe-EEEEeCCcCccccccc----ccCCCeeeEEEecc-CceEEEEeCCcCCC
Q psy3710 10 KNGLLYAGFNQDQGCFAC-------GMEDG-FRIYNCDPLKEKERQD----FTDGGLGHVEMLFR-CNYLALVGGGTHPK 76 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~-------g~~~~-i~iw~~~~~~~~~~~~----~~~~~i~~~~~~~~-~~~l~~~~~~~~~~ 76 (424)
-....+++|+++|.++++ +..++ |.+|+..+++...... .+...+..+.+.++ ++.++ +..
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~----- 90 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADM----- 90 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EET-----
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EEC-----
Confidence 345678999999988877 44444 9999987766532211 13356778888888 55444 442
Q ss_pred cCCCeEEEEECCCCcEEEE-Eee-----cCCeEEEEecCCceEEEee------------------ccEEEEeecCCCcee
Q psy3710 77 YPNNRVMIWDDLKKQVVIC-LEF-----NAPVKGVRLRRDKIVVVLE------------------GLIKVYTFIQCPQQL 132 (424)
Q Consensus 77 ~~d~~i~iwd~~~~~~~~~-~~~-----~~~v~~~~~~~~~~~~~~~------------------~~i~v~~~~~~~~~~ 132 (424)
.+.|.+||.+ ++.... ... ...+.++++.+++.+.+++ +.|..|+. .++..
T Consensus 91 --~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~ 165 (314)
T 1pjx_A 91 --RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT--DGQMI 165 (314)
T ss_dssp --TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT--TSCEE
T ss_pred --CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECC--CCCEE
Confidence 3589999988 776443 221 1347899999998766652 34555553 33333
Q ss_pred EEEeeCCCCCeeEEEeec----CCCCeEEEeeccCCeEEEEeCCCCCC-----CCccccccc-CCeEEEEEccCCCEEEE
Q psy3710 133 HVFETNPNPKGLCVLCPN----SNNSLLAFPGRKSGHVHLVDLADPER-----PPLDIAAHE-APLSCIALNQTGTRLAT 202 (424)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~-~~v~~~~~~~~~~~l~~ 202 (424)
...... .....++++ ++++.+.++...++.|.+||...... ....+..+. ..+..++++++|+.+++
T Consensus 166 ~~~~~~---~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~ 242 (314)
T 1pjx_A 166 QVDTAF---QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA 242 (314)
T ss_dssp EEEEEE---SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEE
T ss_pred EeccCC---CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEE
Confidence 222221 124567788 99977766356789999999762111 112233333 56789999999988888
Q ss_pred EecCCcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEeecCCeEEEEeCCCCC
Q psy3710 203 ASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE 259 (424)
Q Consensus 203 ~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 259 (424)
...++. |.+||..+++.+..+..+ ...+++++++..++++...++.|..|++....
T Consensus 243 ~~~~~~-i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 243 NWGSSH-IEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EETTTE-EEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred EcCCCE-EEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 777888 999999877766665533 56778889998788877778899999987643
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-12 Score=125.85 Aligned_cols=243 Identities=13% Similarity=0.040 Sum_probs=155.4
Q ss_pred ccCCceEEEEECCCCCeeEeecCC-----e-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCC------
Q psy3710 8 TYKNGLLYAGFNQDQGCFACGMED-----G-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHP------ 75 (424)
Q Consensus 8 ~h~~~V~~~~~s~~g~~la~g~~~-----~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~------ 75 (424)
+|...+..++|||||++||.+.++ . |++||+++++.+.. ..+...+..++|+|+ +.+++++.....
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence 344578899999999999965433 3 99999998877432 122222357899999 999888743200
Q ss_pred -CcCCCeEEEEECCCCcE--EEEEee---cCCeEEEEecCCceEEEe---ec-----cEEEEeecCCC-ce-eEEEeeCC
Q psy3710 76 -KYPNNRVMIWDDLKKQV--VICLEF---NAPVKGVRLRRDKIVVVL---EG-----LIKVYTFIQCP-QQ-LHVFETNP 139 (424)
Q Consensus 76 -~~~d~~i~iwd~~~~~~--~~~~~~---~~~v~~~~~~~~~~~~~~---~~-----~i~v~~~~~~~-~~-~~~~~~~~ 139 (424)
......|++|++.++.. ...+.. ...+..+.|+||+..++. ++ .|++||+. ++ .. ...+..+.
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~-~~~~~~~~~l~~~~ 316 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVT-NGKIGPVTALIPDL 316 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEE-TTEECCCEEEECSS
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECC-CCCCcccEEecCCC
Confidence 00034699999987652 222332 235889999999976664 32 79999986 43 12 44454443
Q ss_pred CCCeeEEEeecCCCCeEEEeecc----CCeEEEEeCCCCC-CCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEE
Q psy3710 140 NPKGLCVLCPNSNNSLLAFPGRK----SGHVHLVDLADPE-RPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 214 (424)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~----dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd 214 (424)
.. .... ++|+++.|++ .+. ++.|.+||+.++. .....+..+...+..++++ ++..+++...|+. .++|.
T Consensus 317 ~~--~~~~-~~~dg~~l~~-~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~ 390 (741)
T 1yr2_A 317 KA--QWDF-VDGVGDQLWF-VSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLA 390 (741)
T ss_dssp SS--CEEE-EEEETTEEEE-EECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEE
T ss_pred Cc--eEEE-EeccCCEEEE-EECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEE
Confidence 22 2222 3478888887 443 4569999988641 2223334445556678887 5567788888887 77775
Q ss_pred CC-CcceeeEEecc----eeeeeecCCCCeEEEEee---cCCeEEEEeCCCCC
Q psy3710 215 TG-SGQKLNELRRG----LCVLCPNSNNSLLAFPGR---KSGHVHLVDLADPE 259 (424)
Q Consensus 215 ~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~dg~i~i~d~~~~~ 259 (424)
+. +++....+..+ +..+.+++++..++++.+ ..++|+.||+.+++
T Consensus 391 ~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 391 FDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 43 45555555422 456778888887777554 34789999998754
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-12 Score=112.80 Aligned_cols=242 Identities=10% Similarity=-0.038 Sum_probs=162.9
Q ss_pred cEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEee---------ccCCeEEEEeCCCCCCCCcccccc-----
Q psy3710 119 LIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPG---------RKSGHVHLVDLADPERPPLDIAAH----- 184 (424)
Q Consensus 119 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~dg~i~i~d~~~~~~~~~~~~~~----- 184 (424)
.|.++|.. +.+.+..+.....+ .+.++||++.++++. ..++.|.+||+.+. +.+..+...
T Consensus 47 ~vsvID~~-t~~v~~~i~vG~~P----~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~-~vv~~I~v~~~~~~ 120 (368)
T 1mda_H 47 ENWVSCAG-CGVTLGHSLGAFLS----LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF-LPIADIELPDAPRF 120 (368)
T ss_dssp EEEEEETT-TTEEEEEEEECTTC----EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC-CEEEEEEETTSCSC
T ss_pred eEEEEECC-CCeEEEEEeCCCCC----ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC-CEEEEEECCCcccc
Confidence 77888886 77888888776654 478999999999833 24789999999987 556665432
Q ss_pred --cCCeEEEEEccCCCEEEEEec--CCcEEEE--EECCCcceeeEEecceeeeeecCCCCeEEEEeecCCeEEEEeCCC-
Q psy3710 185 --EAPLSCIALNQTGTRLATASY--KGTLIRV--FDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLAD- 257 (424)
Q Consensus 185 --~~~v~~~~~~~~~~~l~~~~~--d~~~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~- 257 (424)
......++++|||++++.+.. ... +.+ +|..+ +.+++.+-. ..+.|++...+++.+.||.+.+.|+.+
T Consensus 121 ~~g~~P~~ia~SpDGk~lyVan~~~~~~-v~V~~iD~~t---v~~i~v~~~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~ 195 (368)
T 1mda_H 121 SVGPRVHIIGNCASSACLLFFLFGSSAA-AGLSVPGASD---DQLTKSASC-FHIHPGAAATHYLGSCPASLAASDLAAA 195 (368)
T ss_dssp CBSCCTTSEEECTTSSCEEEEECSSSCE-EEEEETTTEE---EEEEECSSC-CCCEEEETTEEECCCCTTSCEEEECCSS
T ss_pred ccCCCcceEEEcCCCCEEEEEccCCCCe-EEEEEEchhh---ceEEECCCc-eEEccCCCeEEEEEcCCCCEEEEECccc
Confidence 134578999999999998875 355 888 89877 445543211 334567777777778889988899876
Q ss_pred ----CCCCC---eeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCc--ee----------------------e
Q psy3710 258 ----PERPP---LDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ--KL----------------------N 306 (424)
Q Consensus 258 ----~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~--~~----------------------~ 306 (424)
++... ..+.....+. + ++++..++..+. +. +.+.|..++. .+ .
T Consensus 196 ~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~-V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v 269 (368)
T 1mda_H 196 PAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SS-ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV 269 (368)
T ss_dssp CCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SC-CEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCE
T ss_pred cccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CE-EEEEECCCCcceEEEEEEeccccccccccccCcceee
Confidence 22110 0111223333 3 566666666666 77 9999986432 11 2
Q ss_pred eeccCCcEEEEEeC---------CCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCC
Q psy3710 307 ELRRDSSYLCVSSD---------HGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSN 377 (424)
Q Consensus 307 ~~~~~~~~l~~~~~---------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 377 (424)
.++++++.+..+.. ++.+.++|+.+.+.+.++.... ....++|+|||+
T Consensus 270 ~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-----------------------~p~gi~~s~Dg~ 326 (368)
T 1mda_H 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-----------------------DSDAIIAAQDGA 326 (368)
T ss_dssp EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-----------------------EECEEEECCSSS
T ss_pred EEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-----------------------CcceEEECCCCC
Confidence 36788887776533 2356699999987765543211 134789999998
Q ss_pred eEEEEe--ccCcEEEEEecCCcceee
Q psy3710 378 SIIVIC--ADGSYYKFMFNSKGECWR 401 (424)
Q Consensus 378 ~l~~~~--~dg~v~~~~~~~~~~~~~ 401 (424)
+++++. .++.|.++|+. +.+.++
T Consensus 327 ~l~va~~~~~~~VsVID~~-t~kvv~ 351 (368)
T 1mda_H 327 SDNYANSAGTEVLDIYDAA-SDQDQS 351 (368)
T ss_dssp CEEEEEETTTTEEEEEESS-SCEEEE
T ss_pred EEEEEccCCCCeEEEEECC-CCcEEE
Confidence 655544 48999999997 555554
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.2e-12 Score=121.51 Aligned_cols=258 Identities=13% Similarity=0.102 Sum_probs=161.2
Q ss_pred ccCCceEEEEECCCCCeeEee-----cCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCe
Q psy3710 8 TYKNGLLYAGFNQDQGCFACG-----MEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNR 81 (424)
Q Consensus 8 ~h~~~V~~~~~s~~g~~la~g-----~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 81 (424)
+|...+..++|||||++||.+ ++.. |++||+++++.+.. ..+......++|+ |++.+++++.. ..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~-------~~ 196 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYD-------KP 196 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESS-------CC
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEec-------Cc
Confidence 466789999999999999943 3333 99999999886432 1212223568899 99999888832 11
Q ss_pred EEEEECCCCcEEEEEeecCCeEEEEecCCceEEEeeccEEEEeecCCCc-eeEEEeeCC-CCCeeEEEeecCCCCeEEEe
Q psy3710 82 VMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQ-QLHVFETNP-NPKGLCVLCPNSNNSLLAFP 159 (424)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 159 (424)
.+.. ..... ....|++|++..... ....+.... ++.....+.++||+++|+++
T Consensus 197 -------~~~~---~~~~~---------------~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~ 251 (693)
T 3iuj_A 197 -------DGSE---LSART---------------DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLIS 251 (693)
T ss_dssp -------C----------C---------------CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEE
T ss_pred -------cccc---ccccC---------------CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEE
Confidence 0000 00000 023466666642221 122222222 23345678899999998764
Q ss_pred ecc---CCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEec-C---CcEEEEEECCCcce--eeEEecc-ee
Q psy3710 160 GRK---SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY-K---GTLIRVFDTGSGQK--LNELRRG-LC 229 (424)
Q Consensus 160 ~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d---~~~i~iwd~~~~~~--~~~~~~~-~~ 229 (424)
... ...|+++|+.++......+..+....... ++++|..|+..+. + +. |..+|+.++.. ...+..+ ..
T Consensus 252 ~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~-l~~~d~~~~~~~~~~~l~~~~~~ 329 (693)
T 3iuj_A 252 AANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRR-LVTVDAANPGPAHWRDLIPERQQ 329 (693)
T ss_dssp EESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCE-EEEEETTSCCGGGCEEEECCCSS
T ss_pred EccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCE-EEEEeCCCCCccccEEEecCCCC
Confidence 432 35899999987644566666666666665 6677766655443 2 56 99999987654 2233222 11
Q ss_pred eeeecCCCCeEEEEeecCC--eEEEEeCCCCCCCCeeec-cCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEEECCCC
Q psy3710 230 VLCPNSNNSLLAFPGRKSG--HVHLVDLADPERPPLDIA-AHEAPLSCIALNQTGTRLATASYK----GTLIRVFDTGSG 302 (424)
Q Consensus 230 ~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d----~~~i~iwd~~~~ 302 (424)
.+.+++++..++++...++ .|++||+.... ...+. .....+..+.++|+++.++....+ +. +..||+.++
T Consensus 330 ~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~--~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~-l~~~d~~~g 406 (693)
T 3iuj_A 330 VLTVHSGSGYLFAEYMVDATARVEQFDYEGKR--VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPT-LYRFEPKSG 406 (693)
T ss_dssp CEEEEEETTEEEEEEEETTEEEEEEECTTSCE--EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCE-EEEECTTTC
T ss_pred EEEEEEECCEEEEEEEECCeeEEEEEECCCCe--eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCE-EEEEECCCC
Confidence 2288899999998777777 68889887543 22222 344567778888888877665544 67 999999877
Q ss_pred ce
Q psy3710 303 QK 304 (424)
Q Consensus 303 ~~ 304 (424)
+.
T Consensus 407 ~~ 408 (693)
T 3iuj_A 407 AI 408 (693)
T ss_dssp CE
T ss_pred eE
Confidence 54
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-11 Score=114.44 Aligned_cols=262 Identities=10% Similarity=0.113 Sum_probs=170.7
Q ss_pred CceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCC------------eEEEEecCCceEEEe-eccEEEEeecCCC
Q psy3710 63 CNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAP------------VKGVRLRRDKIVVVL-EGLIKVYTFIQCP 129 (424)
Q Consensus 63 ~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~------------v~~~~~~~~~~~~~~-~~~i~v~~~~~~~ 129 (424)
+..+++.+ .++.|.-+|..+|+.+.++..... ...+.+..+..++.+ ++.+..+|.+ ++
T Consensus 77 ~g~vyv~~-------~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~-tG 148 (677)
T 1kb0_A 77 DGIMYVSA-------SWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAA-TG 148 (677)
T ss_dssp TTEEEEEC-------GGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETT-TC
T ss_pred CCEEEEEC-------CCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECC-CC
Confidence 45555555 368999999999999998874321 123444444455555 8999999986 78
Q ss_pred ceeEEEeeC-CCC--CeeEEEeecCCCCeEEEeecc------CCeEEEEeCCCCCCCCcccccc----------------
Q psy3710 130 QQLHVFETN-PNP--KGLCVLCPNSNNSLLAFPGRK------SGHVHLVDLADPERPPLDIAAH---------------- 184 (424)
Q Consensus 130 ~~~~~~~~~-~~~--~~~~~~~~~~~~~~l~~~~~~------dg~i~i~d~~~~~~~~~~~~~~---------------- 184 (424)
+.+..+... ... ..+.. .+...+..+++ +.. +|.|+.+|..++ +.+..+...
T Consensus 149 ~~~W~~~~~~~~~~~~~~~~-~p~v~~~~v~v-~~~~~~~~~~g~v~a~D~~tG-~~~W~~~~~~~~~~~~~~~~~~~~g 225 (677)
T 1kb0_A 149 KEVWHQNTFEGQKGSLTITG-APRVFKGKVII-GNGGAEYGVRGYITAYDAETG-ERKWRWFSVPGDPSKPFEDESMKRA 225 (677)
T ss_dssp CEEEEEETTTTCCSSCBCCS-CCEEETTEEEE-CCBCTTTCCBCEEEEEETTTC-CEEEEEESSCCCTTSCCSSHHHHHH
T ss_pred CEEeeecCCcCcCcCccccc-CcEEECCEEEE-EecccccCCCCEEEEEECCCC-cEEEEeccCCCCccccccccccccc
Confidence 888877754 210 00100 00012344554 443 799999999887 333322211
Q ss_pred ----------------cCCeEEEEEccCCCEEEEEecCC-------------------cEEEEEECCCcceeeEEecc--
Q psy3710 185 ----------------EAPLSCIALNQTGTRLATASYKG-------------------TLIRVFDTGSGQKLNELRRG-- 227 (424)
Q Consensus 185 ----------------~~~v~~~~~~~~~~~l~~~~~d~-------------------~~i~iwd~~~~~~~~~~~~~-- 227 (424)
......++++|++..++.+..++ . |..+|.++++.+..++..
T Consensus 226 ~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s-v~AlD~~TG~~~W~~~~~~~ 304 (677)
T 1kb0_A 226 ARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS-IVALDPDTGKYKWHYQETPG 304 (677)
T ss_dssp HTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE-EEEECTTTCCEEEEEESSTT
T ss_pred cccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE-EEEEECCCCCEEEEEecCCC
Confidence 11123578889888888877653 5 999999999998777632
Q ss_pred ----------eeeeeecCCCC--eEEEEeecCCeEEEEeCCCCCCCCeeecc----------CCCCe-------------
Q psy3710 228 ----------LCVLCPNSNNS--LLAFPGRKSGHVHLVDLADPERPPLDIAA----------HEAPL------------- 272 (424)
Q Consensus 228 ----------~~~~~~~~~~~--~~~~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~v------------- 272 (424)
........+++ .+++.++.+|.++++|..+++.....-.. ...++
T Consensus 305 d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 384 (677)
T 1kb0_A 305 DNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQD 384 (677)
T ss_dssp CCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEE
T ss_pred cccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccE
Confidence 11112222443 56667999999999999988742111000 00011
Q ss_pred -----------EEEEEcCCCCEEEEEeCC-------------------------------------------CcEEEEEE
Q psy3710 273 -----------SCIALNQTGTRLATASYK-------------------------------------------GTLIRVFD 298 (424)
Q Consensus 273 -----------~~~~~~~~~~~l~~~~~d-------------------------------------------~~~i~iwd 298 (424)
..++++|++.++++...+ +. |..||
T Consensus 385 ~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~-l~A~D 463 (677)
T 1kb0_A 385 AVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGR-LLAWD 463 (677)
T ss_dssp CSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEE-EEEEE
T ss_pred ECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccE-EEEEe
Confidence 257889988888775432 66 99999
Q ss_pred CCCCceeeeec-----------cCCcEEEEEeCCCcEEEEEccccccccc
Q psy3710 299 TGSGQKLNELR-----------RDSSYLCVSSDHGTVHVFSVDEAQKINK 337 (424)
Q Consensus 299 ~~~~~~~~~~~-----------~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 337 (424)
+.+++.+.++. .++.+++.++.||.+++||..+++.+.+
T Consensus 464 ~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~ 513 (677)
T 1kb0_A 464 PVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE 513 (677)
T ss_dssp TTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeee
Confidence 99999888753 3567888899999999999999987654
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.49 E-value=6.9e-11 Score=101.39 Aligned_cols=221 Identities=10% Similarity=0.040 Sum_probs=150.2
Q ss_pred cCCceEEEEECCCCC-eeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEE
Q psy3710 9 YKNGLLYAGFNQDQG-CFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWD 86 (424)
Q Consensus 9 h~~~V~~~~~s~~g~-~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd 86 (424)
+..---+..|+|++. ++++...++ |..||.++++... .. ....+..+.+.++++.++ +. ++.|.+||
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~~~~i~~~~dG~l~v-~~--------~~~l~~~d 79 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VT-MDAPVSSVALRQSGGYVA-TI--------GTKFCALN 79 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EE-CSSCEEEEEEBTTSSEEE-EE--------TTEEEEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-Ee-CCCceEEEEECCCCCEEE-EE--------CCeEEEEE
Confidence 344556789999654 455665555 9999988765421 22 256788899999999444 33 36899999
Q ss_pred CCCCcEEEEEee-----cCCeEEEEecCCceEEEee------------ccEEEEeecCCCceeEEEeeCCCCCeeEEEee
Q psy3710 87 DLKKQVVICLEF-----NAPVKGVRLRRDKIVVVLE------------GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCP 149 (424)
Q Consensus 87 ~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~------------~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (424)
.++++....... ...+..++++|++.+.+++ ..-.+|.+...++........ .....+++
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~---~~pngi~~ 156 (297)
T 3g4e_A 80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQV---DISNGLDW 156 (297)
T ss_dssp TTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEE---SBEEEEEE
T ss_pred CCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecc---ccccceEE
Confidence 988775443332 1347889999999766652 234666665344333322221 22467899
Q ss_pred cCCCCeEEEeeccCCeEEEEeCC--CCCCC-----CcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceee
Q psy3710 150 NSNNSLLAFPGRKSGHVHLVDLA--DPERP-----PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN 222 (424)
Q Consensus 150 ~~~~~~l~~~~~~dg~i~i~d~~--~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~ 222 (424)
+|+++.|+++.+.++.|..|++. ++ .. ...+..+......+++.++|++.++....+. |..||..+++.+.
T Consensus 157 spdg~~lyv~~~~~~~i~~~~~d~~~G-~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~-v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 157 SLDHKIFYYIDSLSYSVDAFDYDLQTG-QISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR-VIRLDPVTGKRLQ 234 (297)
T ss_dssp CTTSCEEEEEEGGGTEEEEEEECTTTC-CEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE-EEEECTTTCCEEE
T ss_pred cCCCCEEEEecCCCCcEEEEeccCCCC-cccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE-EEEEcCCCceEEE
Confidence 99999887657778999999974 32 11 1122234456789999999987777777788 9999999898888
Q ss_pred EEecc---eeeeeec-CCCCeEEEEee
Q psy3710 223 ELRRG---LCVLCPN-SNNSLLAFPGR 245 (424)
Q Consensus 223 ~~~~~---~~~~~~~-~~~~~~~~~~~ 245 (424)
.+..+ ...++|. |+++.++++..
T Consensus 235 ~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 235 TVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 87754 5677787 77777777554
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-11 Score=104.75 Aligned_cols=232 Identities=10% Similarity=0.064 Sum_probs=151.0
Q ss_pred CeeeEEEeccCceEEE-------EeCCcCCCcCCCeEEEEECCCCcEEEEEe-----ecCCeEEEEecCC-ceEEEe--e
Q psy3710 53 GLGHVEMLFRCNYLAL-------VGGGTHPKYPNNRVMIWDDLKKQVVICLE-----FNAPVKGVRLRRD-KIVVVL--E 117 (424)
Q Consensus 53 ~i~~~~~~~~~~~l~~-------~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~-~~~~~~--~ 117 (424)
....++|.+++..+++ .. .++.|.+||..+++...... +...+.+++++++ +.+.++ .
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~-------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~ 91 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGK-------PAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR 91 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTE-------ECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT
T ss_pred CccCceECCCCCEEEEEeccccCCC-------CCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC
Confidence 3457888888876655 12 36899999988887654332 3467899999999 765554 4
Q ss_pred ccEEEEeecCCCceeEE-EeeCC--CCCeeEEEeecCCCCeEEEeeccC---------------CeEEEEeCCCCCCCCc
Q psy3710 118 GLIKVYTFIQCPQQLHV-FETNP--NPKGLCVLCPNSNNSLLAFPGRKS---------------GHVHLVDLADPERPPL 179 (424)
Q Consensus 118 ~~i~v~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~l~~~~~~d---------------g~i~i~d~~~~~~~~~ 179 (424)
+.|.+||.. ++.... ..... ....+..++++++++++++ ...+ +.|..|+.. + + ..
T Consensus 92 ~~l~~~d~~--g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-~-~~ 165 (314)
T 1pjx_A 92 LGLLVVQTD--GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWIT-APAGEVAPADYTRSMQEKFGSIYCFTTD-G-Q-MI 165 (314)
T ss_dssp TEEEEEETT--SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEE-ECBCBCTTSCCCBTTSSSCEEEEEECTT-S-C-EE
T ss_pred CCEEEEeCC--CCEEEEEeccCCCccccCCcCEEECCCCCEEEE-ecCcccccccccccccCCCCeEEEECCC-C-C-EE
Confidence 578888874 333221 11111 1123567888999987776 4443 567777755 2 2 22
Q ss_pred ccccccCCeEEEEEc----cCCCEEEEE-ecCCcEEEEEECC-Ccce-----eeEEe----cceeeeeecCCCCeEEEEe
Q psy3710 180 DIAAHEAPLSCIALN----QTGTRLATA-SYKGTLIRVFDTG-SGQK-----LNELR----RGLCVLCPNSNNSLLAFPG 244 (424)
Q Consensus 180 ~~~~~~~~v~~~~~~----~~~~~l~~~-~~d~~~i~iwd~~-~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~ 244 (424)
.+..+......++++ |+++.++.+ ..++. |.+||.. +++. ...+. .....+++++++. ++++.
T Consensus 166 ~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~ 243 (314)
T 1pjx_A 166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKK-LWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVAN 243 (314)
T ss_dssp EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTE-EEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEE
T ss_pred EeccCCCCcceEEEecccCCCCCEEEEEECCCCe-EEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEE
Confidence 333344567899999 999766555 45677 9999976 3431 22222 2245678888875 44446
Q ss_pred ecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEECCC
Q psy3710 245 RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS-YKGTLIRVFDTGS 301 (424)
Q Consensus 245 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~~i~iwd~~~ 301 (424)
..++.|.+||..+++. ...+..+...+.+++|+|+++.|+.++ .++. |..|++..
T Consensus 244 ~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~-l~~~~~~~ 299 (314)
T 1pjx_A 244 WGSSHIEVFGPDGGQP-KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNA-VWKFEWQR 299 (314)
T ss_dssp ETTTEEEEECTTCBSC-SEEEECSSSCEEEEEECTTSSEEEEEETTTTE-EEEEECSS
T ss_pred cCCCEEEEEcCCCCcE-eEEEeCCCCCceeEEECCCCCEEEEEeCCCCe-EEEEeCCC
Confidence 6788999999885543 344455667899999999998555544 4566 88888764
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-11 Score=115.02 Aligned_cols=262 Identities=14% Similarity=0.150 Sum_probs=167.5
Q ss_pred CceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCC------------eEEEEecCCceEEEe-eccEEEEeecCCC
Q psy3710 63 CNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAP------------VKGVRLRRDKIVVVL-EGLIKVYTFIQCP 129 (424)
Q Consensus 63 ~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~------------v~~~~~~~~~~~~~~-~~~i~v~~~~~~~ 129 (424)
+..+++.+ .++.|..+|.++|+.+.++..... -..+.+..+..++.+ ++.|..+|.+ ++
T Consensus 70 ~g~vyv~~-------~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~-TG 141 (689)
T 1yiq_A 70 DGVMYTTG-------PFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAK-TG 141 (689)
T ss_dssp TTEEEEEC-------GGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETT-TC
T ss_pred CCEEEEEc-------CCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECC-CC
Confidence 55555555 368999999999999998863221 122344444455555 8999999986 78
Q ss_pred ceeEEEeeCCCCCeeEEEeecC---CCCeEEEeec------cCCeEEEEeCCCCCCCCccccc-----------------
Q psy3710 130 QQLHVFETNPNPKGLCVLCPNS---NNSLLAFPGR------KSGHVHLVDLADPERPPLDIAA----------------- 183 (424)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~------~dg~i~i~d~~~~~~~~~~~~~----------------- 183 (424)
+.+..+...........+..+| ++. +++ +. .+|.|..||..++ +.+-.+..
T Consensus 142 ~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~v-g~~~~~~~~~g~v~a~D~~tG-~~~W~~~~~~~~p~~~~~~~~~~~~ 218 (689)
T 1yiq_A 142 QRAWSVDTRADHKRSYTITGAPRVVNGK-VVI-GNGGAEFGVRGYVTAYDAETG-KEAWRFYTVPGDPKLPPEGKGMEIA 218 (689)
T ss_dssp CEEEEEECCSCTTSCCBCCSCCEEETTE-EEE-CCBCTTTCCBCEEEEEETTTC-CEEEEEESSCCCTTSCCCSHHHHHH
T ss_pred CEeeeecCcCCCCCCccccCCcEEECCE-EEE-EeCCCccCCCCEEEEEECCCC-cEEEEecccCCCccccccccccccc
Confidence 8887776530110000011111 444 444 33 3789999999987 33322221
Q ss_pred --------------ccCCeEEEEEccCCCEEEEEecCC-------------------cEEEEEECCCcceeeEEecce--
Q psy3710 184 --------------HEAPLSCIALNQTGTRLATASYKG-------------------TLIRVFDTGSGQKLNELRRGL-- 228 (424)
Q Consensus 184 --------------~~~~v~~~~~~~~~~~l~~~~~d~-------------------~~i~iwd~~~~~~~~~~~~~~-- 228 (424)
+......++++|++..++.+..++ . |..+|.++++.+..++...
T Consensus 219 ~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~-v~AlD~~TG~~~W~~~~~~~d 297 (689)
T 1yiq_A 219 AKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSS-IVAVNADTGEYVWHYQTTPGD 297 (689)
T ss_dssp HTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTE-EEEEETTTCCEEEEEESSTTC
T ss_pred ccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee-EEEEEccCCceeEeeecCCcc
Confidence 111113578888888888887764 5 8999999999988776420
Q ss_pred ----------eeeeecCCCC--eEEEEeecCCeEEEEeCCCCCCCCeeec---------------------------cCC
Q psy3710 229 ----------CVLCPNSNNS--LLAFPGRKSGHVHLVDLADPERPPLDIA---------------------------AHE 269 (424)
Q Consensus 229 ----------~~~~~~~~~~--~~~~~~~~dg~i~i~d~~~~~~~~~~~~---------------------------~~~ 269 (424)
.......++. .+++.++.+|.++++|.++++.....-. ...
T Consensus 298 ~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~ 377 (689)
T 1yiq_A 298 AWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGK 377 (689)
T ss_dssp CSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSS
T ss_pred cccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCC
Confidence 0111111332 3566689999999999998874211000 000
Q ss_pred C-----------CeEEEEEcCCCCEEEEEeC---------------------------------------------CCcE
Q psy3710 270 A-----------PLSCIALNQTGTRLATASY---------------------------------------------KGTL 293 (424)
Q Consensus 270 ~-----------~v~~~~~~~~~~~l~~~~~---------------------------------------------d~~~ 293 (424)
. .-..++|+|+..++++... +|.
T Consensus 378 ~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~- 456 (689)
T 1yiq_A 378 RNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGK- 456 (689)
T ss_dssp CEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEE-
T ss_pred eeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCccee-
Confidence 0 0123788998887776532 367
Q ss_pred EEEEECCCCceeeeec-----------cCCcEEEEEeCCCcEEEEEccccccccc
Q psy3710 294 IRVFDTGSGQKLNELR-----------RDSSYLCVSSDHGTVHVFSVDEAQKINK 337 (424)
Q Consensus 294 i~iwd~~~~~~~~~~~-----------~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 337 (424)
|+.||+.+|+.+.++. ..+.+++.++.||.++.||.++|+.+-+
T Consensus 457 l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~ 511 (689)
T 1yiq_A 457 LIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWE 511 (689)
T ss_dssp EEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCcccee
Confidence 9999999999888753 3567888999999999999999987643
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-10 Score=98.54 Aligned_cols=225 Identities=13% Similarity=0.056 Sum_probs=148.9
Q ss_pred eeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe-eccEEEEeecCCCcee
Q psy3710 54 LGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQL 132 (424)
Q Consensus 54 i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~ 132 (424)
-....|.++.+.++.+... ++.|..||..+++. ..+.....+.++++++++.+++. ++.|.+||.. +++..
T Consensus 15 ~Egp~w~~~~~~l~~~d~~------~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~-~g~~~ 86 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIP------AKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATIGTKFCALNWK-EQSAV 86 (297)
T ss_dssp EEEEEEETTTTEEEEEETT------TTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEETTEEEEEETT-TTEEE
T ss_pred ccCCeEECCCCEEEEEECC------CCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEECCeEEEEECC-CCcEE
Confidence 3457888887777777643 68999999988765 45566788999999999876665 7789999975 44433
Q ss_pred EEEeeCC--CCCeeEEEeecCCCCeEEEeecc--------CCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEE
Q psy3710 133 HVFETNP--NPKGLCVLCPNSNNSLLAFPGRK--------SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLAT 202 (424)
Q Consensus 133 ~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~--------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 202 (424)
....... .......+.++|+|++++.+... ...-.+|.+... .....+..+......++|+|+++.|+.
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEE
Confidence 2222211 12346778899999977652221 123345544432 222333344455789999999987754
Q ss_pred -EecCCcEEEEEEC--CCccee-----eEEe---cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCC
Q psy3710 203 -ASYKGTLIRVFDT--GSGQKL-----NELR---RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAP 271 (424)
Q Consensus 203 -~~~d~~~i~iwd~--~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 271 (424)
.+.++. |..|++ .++... ..+. .....+++++++. +.++....+.|..||..+++ ....+..+...
T Consensus 166 ~~~~~~~-i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG~-~~~~i~~p~~~ 242 (297)
T 3g4e_A 166 IDSLSYS-VDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTGK-RLQTVKLPVDK 242 (297)
T ss_dssp EEGGGTE-EEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTCC-EEEEEECSSSB
T ss_pred ecCCCCc-EEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCce-EEEEEECCCCC
Confidence 455677 999987 455432 1222 1246678888884 55556678899999998765 34455556678
Q ss_pred eEEEEEc-CCCCEEEEEeCC
Q psy3710 272 LSCIALN-QTGTRLATASYK 290 (424)
Q Consensus 272 v~~~~~~-~~~~~l~~~~~d 290 (424)
+++++|. |+++.|+.++..
T Consensus 243 ~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 243 TTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEEEEESGGGCEEEEEEBC
T ss_pred ceEEEEeCCCCCEEEEEcCC
Confidence 9999998 888877666554
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=7.1e-12 Score=109.45 Aligned_cols=257 Identities=10% Similarity=-0.029 Sum_probs=168.0
Q ss_pred eEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCC---CcCCCeEEEEECCCCcEEEEEeec--------C
Q psy3710 32 GFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHP---KYPNNRVMIWDDLKKQVVICLEFN--------A 100 (424)
Q Consensus 32 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~---~~~d~~i~iwd~~~~~~~~~~~~~--------~ 100 (424)
.|.++|.++++.+........+ .+.++|+++.++++...... ...++.|.+||..+++.+.++... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 5789999999887665544444 69999999999888621000 002589999999999999999854 3
Q ss_pred CeEEEEecCCceEEEe-----eccEEE--EeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCC
Q psy3710 101 PVKGVRLRRDKIVVVL-----EGLIKV--YTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLAD 173 (424)
Q Consensus 101 ~v~~~~~~~~~~~~~~-----~~~i~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~ 173 (424)
....++++||+.++.. +..+.+ +|.. + +..+.... + +...|+++..+.+.+.||.+.+.|+.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~-t---v~~i~v~~----~--~~~~p~g~~~~~~~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS-D---DQLTKSAS----C--FHIHPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTE-E---EEEEECSS----C--CCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchh-h---ceEEECCC----c--eEEccCCCeEEEEEcCCCCEEEEECcc
Confidence 5778999999965553 246888 8876 3 44444321 1 122344544444467788888888876
Q ss_pred ----CCCCC----cccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcc--eeeEEe-------------cceee
Q psy3710 174 ----PERPP----LDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ--KLNELR-------------RGLCV 230 (424)
Q Consensus 174 ----~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~--~~~~~~-------------~~~~~ 230 (424)
..+.. ..+.....+. . .+++..++..+. +. +.+.|..+.. .+..+. .+...
T Consensus 195 ~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~-V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~ 268 (368)
T 1mda_H 195 APAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SS-ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQM 268 (368)
T ss_dssp SCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SC-CEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSC
T ss_pred ccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CE-EEEEECCCCcceEEEEEEeccccccccccccCccee
Confidence 11221 1111223333 3 666666666666 88 9999986542 222221 12233
Q ss_pred eeecCCCCeEEEEee-c-------CCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCE-EEEEe-CCCcEEEEEECC
Q psy3710 231 LCPNSNNSLLAFPGR-K-------SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTR-LATAS-YKGTLIRVFDTG 300 (424)
Q Consensus 231 ~~~~~~~~~~~~~~~-~-------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~-~d~~~i~iwd~~ 300 (424)
++++++++.++++.. . ++.+.++|+.+.+. ...+... .....++|+|||++ +++.. .++. |.++|+.
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v-v~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~-VsVID~~ 345 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT-SGPISNG-HDSDAIIAAQDGASDNYANSAGTEV-LDIYDAA 345 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE-EECCEEE-EEECEEEECCSSSCEEEEEETTTTE-EEEEESS
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE-EEEEECC-CCcceEEECCCCCEEEEEccCCCCe-EEEEECC
Confidence 679999999888544 2 23566999998764 3333222 25889999999985 55555 4888 9999999
Q ss_pred CCceeeeec
Q psy3710 301 SGQKLNELR 309 (424)
Q Consensus 301 ~~~~~~~~~ 309 (424)
+++.+.++.
T Consensus 346 t~kvv~~I~ 354 (368)
T 1mda_H 346 SDQDQSSVE 354 (368)
T ss_dssp SCEEEEECC
T ss_pred CCcEEEEEE
Confidence 999988775
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.8e-11 Score=105.52 Aligned_cols=231 Identities=9% Similarity=0.009 Sum_probs=152.1
Q ss_pred CceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC
Q psy3710 11 NGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK 89 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~ 89 (424)
.....++|+++|+++++...++ |++||.++++....... ..... +++.++++.++.+.... ...|.+++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~-----~~~I~~~d~~~ 203 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEG-----THTVYVYMKAS 203 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSST-----TCEEEEEEGGG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCC-----CceEEEEEcCC
Confidence 4678999999999777776655 99999987666433332 22223 89999999888777431 23899999876
Q ss_pred CcEEEEE----e-ecCCeEEEEecC-CceEEEe--eccEEEEeecCCCceeEEEee--CCCCCee--E-EEeecCCCCeE
Q psy3710 90 KQVVICL----E-FNAPVKGVRLRR-DKIVVVL--EGLIKVYTFIQCPQQLHVFET--NPNPKGL--C-VLCPNSNNSLL 156 (424)
Q Consensus 90 ~~~~~~~----~-~~~~v~~~~~~~-~~~~~~~--~~~i~v~~~~~~~~~~~~~~~--~~~~~~~--~-~~~~~~~~~~l 156 (424)
+.....+ . ....+.+++++| ++.+++. ++.|+.||.. ... ...+.. ....... . .++++|++..|
T Consensus 204 ~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~-~~~-~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 204 GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVK-TQE-VTLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETT-TCC-EEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECC-CCC-EEEEecccccCCCCCCccccEEEeCCCCEE
Confidence 6654444 2 345678899999 6665556 5679999975 333 222211 1101111 2 78889965555
Q ss_pred EEeeccCCeEEEEeCCCCCCCCcccccc---------------cCCeEEEEEccCCCEEEEEe-cCCcEEEEEECCCcce
Q psy3710 157 AFPGRKSGHVHLVDLADPERPPLDIAAH---------------EAPLSCIALNQTGTRLATAS-YKGTLIRVFDTGSGQK 220 (424)
Q Consensus 157 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~-~d~~~i~iwd~~~~~~ 220 (424)
+++...++.|+.|+.... ...+.++ -.....++++|+|+++++-. .++. |+.|++.+++.
T Consensus 282 yv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~-I~~~~~~~G~v 357 (409)
T 3hrp_A 282 YMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC-LRKLDILDGYV 357 (409)
T ss_dssp EEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE-EEEEETTTTEE
T ss_pred EEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE-EEEEECCCCEE
Confidence 554778899999997642 2222222 13478999999999777776 7788 99999877764
Q ss_pred eeEEec-----------------ceeeeeecCCCCeEEEEeecCCeEEEEeC
Q psy3710 221 LNELRR-----------------GLCVLCPNSNNSLLAFPGRKSGHVHLVDL 255 (424)
Q Consensus 221 ~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~dg~i~i~d~ 255 (424)
...... ....++++++ ..++++...++.|+.+++
T Consensus 358 ~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 358 STVAGQVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred EEEeCCCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEe
Confidence 332221 1455777777 456665777777777664
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.5e-12 Score=110.94 Aligned_cols=170 Identities=10% Similarity=0.058 Sum_probs=125.8
Q ss_pred ceEEEEECCCCCeeEeecCCeEEEEeCCcCc---------ccc-cccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCe
Q psy3710 12 GLLYAGFNQDQGCFACGMEDGFRIYNCDPLK---------EKE-RQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNR 81 (424)
Q Consensus 12 ~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~---------~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 81 (424)
.++.+++++...++++|+.+++++|+++... ... ......+ |..++| +++.|+++. ++.
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~--------~~~ 107 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVST--------RNA 107 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEE--------SSE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEc--------CCc
Confidence 6899999999999999999999999976544 111 1112344 999999 888888773 689
Q ss_pred EEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe-eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEe
Q psy3710 82 VMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFP 159 (424)
Q Consensus 82 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (424)
|++||+.+........ +..++.++.+.+....++. ||.+.+||++ ...... +. ..+.+++|+|+| +++
T Consensus 108 l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~-~~~~~~-~~-----~~Vs~v~WSpkG--~~v- 177 (388)
T 1xip_A 108 LYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLR-TKSTKQ-LA-----QNVTSFDVTNSQ--LAV- 177 (388)
T ss_dssp EEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETT-TCCEEE-EE-----ESEEEEEECSSE--EEE-
T ss_pred EEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEcc-CCcccc-cc-----CCceEEEEcCCc--eEE-
Confidence 9999988766554444 6778888888766544444 9999999996 444432 21 248899999999 565
Q ss_pred eccCCeEEEEeCCCCCCC-Cccc------c---cccCCeEEEEEccCCCEEEE
Q psy3710 160 GRKSGHVHLVDLADPERP-PLDI------A---AHEAPLSCIALNQTGTRLAT 202 (424)
Q Consensus 160 ~~~dg~i~i~d~~~~~~~-~~~~------~---~~~~~v~~~~~~~~~~~l~~ 202 (424)
|..||.+++|+....... ...+ . +|...|.++.|.+++.++++
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 899999999988764210 2223 2 37889999999999887765
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-10 Score=102.88 Aligned_cols=192 Identities=12% Similarity=0.029 Sum_probs=133.0
Q ss_pred CeEEEEecCCceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCC--eEEEEeCCCCC
Q psy3710 101 PVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSG--HVHLVDLADPE 175 (424)
Q Consensus 101 ~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg--~i~i~d~~~~~ 175 (424)
.+..+++++++.++++ ++.|++||.. .+........... .. ++++++++.|++ +..++ .|.+++....
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~-~g~~~~~~~~~~~---~~-ia~~~~g~~l~~-~d~~~~~~I~~~d~~~~- 204 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVD-DNKVTTVHPGFKG---GK-PAVTKDKQRVYS-IGWEGTHTVYVYMKASG- 204 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETT-TTEEEEEEETCCB---CB-CEECTTSSEEEE-EBSSTTCEEEEEEGGGT-
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECC-CCEEEEeeccCCC---Cc-eeEecCCCcEEE-EecCCCceEEEEEcCCC-
Confidence 5788999999987776 4689999985 4444433333221 22 788999998887 55544 8999988764
Q ss_pred CCCccc----ccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeE----Eec--ce--e-eeeecCCCCeEEE
Q psy3710 176 RPPLDI----AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE----LRR--GL--C-VLCPNSNNSLLAF 242 (424)
Q Consensus 176 ~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~----~~~--~~--~-~~~~~~~~~~~~~ 242 (424)
.....+ ......+.+++++|++..|+.+..++. |+.||..++..... ... .. . .++++|++..+++
T Consensus 205 ~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~-I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 205 WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKN-FGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCE-EEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCc-EEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence 222222 214466789999995556666777888 99999987753322 111 12 2 7899998888888
Q ss_pred EeecCCeEEEEeCCCCCCCCeeeccC---------------CCCeEEEEEcCCCCEEEEEe-CCCcEEEEEECCCCce
Q psy3710 243 PGRKSGHVHLVDLADPERPPLDIAAH---------------EAPLSCIALNQTGTRLATAS-YKGTLIRVFDTGSGQK 304 (424)
Q Consensus 243 ~~~~dg~i~i~d~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~-~d~~~i~iwd~~~~~~ 304 (424)
+...++.|+.|+.... ...+.++ -.....++++|+|+++++-. .++. |+.|++.+++.
T Consensus 284 ~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~-I~~~~~~~G~v 357 (409)
T 3hrp_A 284 SDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC-LRKLDILDGYV 357 (409)
T ss_dssp EETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE-EEEEETTTTEE
T ss_pred EeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE-EEEEECCCCEE
Confidence 7888999999997643 2222222 24578999999999777766 6777 99999877764
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-10 Score=111.00 Aligned_cols=272 Identities=13% Similarity=0.120 Sum_probs=173.8
Q ss_pred eeEeecCCe-EEEEeCCcCcccccccccCCC---------eeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEE
Q psy3710 24 CFACGMEDG-FRIYNCDPLKEKERQDFTDGG---------LGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVV 93 (424)
Q Consensus 24 ~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~---------i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~ 93 (424)
.+.+++.++ |.-+|..+++.+......... +..-.....+..+++.+ .|+.|..+|.++|+.+
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~-------~dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGA-------WDGRLIALDAATGKEV 151 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEEC-------TTSEEEEEETTTCCEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEc-------CCCEEEEEECCCCCEE
Confidence 444444445 888999888876554432110 11111222455666555 4799999999999999
Q ss_pred EEEeec-C-----CeE-EEEecCCceEEEe-------eccEEEEeecCCCceeEEEeeCCCCC-----------------
Q psy3710 94 ICLEFN-A-----PVK-GVRLRRDKIVVVL-------EGLIKVYTFIQCPQQLHVFETNPNPK----------------- 142 (424)
Q Consensus 94 ~~~~~~-~-----~v~-~~~~~~~~~~~~~-------~~~i~v~~~~~~~~~~~~~~~~~~~~----------------- 142 (424)
.++... . .+. ...+..+..++.. ++.|+.||.. +++.+..+.......
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~-tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~ 230 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAE-TGERKWRWFSVPGDPSKPFEDESMKRAARTWD 230 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETT-TCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred eeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECC-CCcEEEEeccCCCCcccccccccccccccccc
Confidence 988743 1 222 1222233333333 4789999986 788777766433210
Q ss_pred -------------eeEEEeecCCCCeEEEeeccCC-------------------eEEEEeCCCCCCCCccccc--cc---
Q psy3710 143 -------------GLCVLCPNSNNSLLAFPGRKSG-------------------HVHLVDLADPERPPLDIAA--HE--- 185 (424)
Q Consensus 143 -------------~~~~~~~~~~~~~l~~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~--~~--- 185 (424)
....+++++++..+++ +..++ .|..+|..++ +.+..++. |.
T Consensus 231 ~~g~~~~~~~g~~~w~~~~~d~~~~~vy~-~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG-~~~W~~~~~~~d~wd 308 (677)
T 1kb0_A 231 PSGKWWEAGGGGTMWDSMTFDAELNTMYV-GTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG-KYKWHYQETPGDNWD 308 (677)
T ss_dssp GGGCHHHHCEECCCCSCEEEETTTTEEEE-ECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC-CEEEEEESSTTCCSC
T ss_pred ccCceeEeCCCcccccceeEcCCCCEEEE-ECCCCccccCCCCCccCCCCeeeEEEEEEECCCC-CEEEEEecCCCcccc
Confidence 0013566778888877 65553 5999999987 44433332 21
Q ss_pred ----CCeEEEEEccCC---CEEEEEecCCcEEEEEECCCcceeeEEecce------------------------------
Q psy3710 186 ----APLSCIALNQTG---TRLATASYKGTLIRVFDTGSGQKLNELRRGL------------------------------ 228 (424)
Q Consensus 186 ----~~v~~~~~~~~~---~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~------------------------------ 228 (424)
....-+....+| +.++.++.+|. ++++|.++++.+..++...
T Consensus 309 ~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~-l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P 387 (677)
T 1kb0_A 309 YTSTQPMILADIKIAGKPRKVILHAPKNGF-FFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVP 387 (677)
T ss_dssp CCCCSCCEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSS
T ss_pred cccCCCcEEEecccCCcEeeEEEEECCCCE-EEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECc
Confidence 122233334477 67899999999 9999999999887665210
Q ss_pred --------eeeeecCCCCeEEEEeec------------------------------------------CCeEEEEeCCCC
Q psy3710 229 --------CVLCPNSNNSLLAFPGRK------------------------------------------SGHVHLVDLADP 258 (424)
Q Consensus 229 --------~~~~~~~~~~~~~~~~~~------------------------------------------dg~i~i~d~~~~ 258 (424)
..++++|+...+++.... .|.|..||+.++
T Consensus 388 ~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG 467 (677)
T 1kb0_A 388 GPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ 467 (677)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT
T ss_pred CcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC
Confidence 134667777777663321 278999999987
Q ss_pred CCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec
Q psy3710 259 ERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR 309 (424)
Q Consensus 259 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 309 (424)
+..-. . .+..++....+..++..++.++.|+. +++||.++|+.+.++.
T Consensus 468 ~~~W~-~-~~~~~~~~g~~~~~g~~v~~g~~dg~-l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 468 KAAWS-V-EHVSPWNGGTLTTAGNVVFQGTADGR-LVAYHAATGEKLWEAP 515 (677)
T ss_dssp EEEEE-E-EESSSCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEEE
T ss_pred cEEee-c-CCCCCCcCcceEeCCCEEEEECCCCc-EEEEECCCCceeeeee
Confidence 74322 2 23344555566777888999999999 9999999999999874
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-10 Score=111.02 Aligned_cols=274 Identities=15% Similarity=0.120 Sum_probs=170.9
Q ss_pred CCeeEeecCCe-EEEEeCCcCcccccccccCCC---------eeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCc
Q psy3710 22 QGCFACGMEDG-FRIYNCDPLKEKERQDFTDGG---------LGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ 91 (424)
Q Consensus 22 g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~---------i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~ 91 (424)
+..+.+++.++ |.-+|..+++.+......... .........+..+++.+ .|+.|..+|.++|+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~-------~dg~l~AlDa~TG~ 142 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGV-------LDGRLEAIDAKTGQ 142 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC-------TTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEc-------cCCEEEEEECCCCC
Confidence 34455555555 999999998886554432110 00011122455565555 47999999999999
Q ss_pred EEEEEeec-C--CeEEEEecC---CceEEEe--------eccEEEEeecCCCceeEEEeeCC-CCC--------------
Q psy3710 92 VVICLEFN-A--PVKGVRLRR---DKIVVVL--------EGLIKVYTFIQCPQQLHVFETNP-NPK-------------- 142 (424)
Q Consensus 92 ~~~~~~~~-~--~v~~~~~~~---~~~~~~~--------~~~i~v~~~~~~~~~~~~~~~~~-~~~-------------- 142 (424)
.+.++... . ....+..+| ++.+++. ++.|..||.+ +++.+..+.... .+.
T Consensus 143 ~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~-tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 221 (689)
T 1yiq_A 143 RAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAE-TGKEAWRFYTVPGDPKLPPEGKGMEIAAKT 221 (689)
T ss_dssp EEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETT-TCCEEEEEESSCCCTTSCCCSHHHHHHHTT
T ss_pred EeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECC-CCcEEEEecccCCCcccccccccccccccc
Confidence 99887743 1 111111122 4444442 4789999986 788777665321 000
Q ss_pred --------------eeEEEeecCCCCeEEEeeccCC-------------------eEEEEeCCCCCCCCccccc--cc--
Q psy3710 143 --------------GLCVLCPNSNNSLLAFPGRKSG-------------------HVHLVDLADPERPPLDIAA--HE-- 185 (424)
Q Consensus 143 --------------~~~~~~~~~~~~~l~~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~--~~-- 185 (424)
....++++|+...+++ +..++ .|..+|.+++ +.+-.++. |.
T Consensus 222 ~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~-~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG-~~~W~~~~~~~d~w 299 (689)
T 1yiq_A 222 WFGDAYVEQGGGGTAWDSFAYDPELNLLYI-GVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG-EYVWHYQTTPGDAW 299 (689)
T ss_dssp CCSSTHHHHCEECCCCSCEEEETTTTEEEE-ECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC-CEEEEEESSTTCCS
T ss_pred cCCceeeecCCCCccccceeEcCCCCEEEE-eCCCCCccccCCCCCCCCCceeeeeEEEEEccCC-ceeEeeecCCcccc
Confidence 0013567788888887 77665 3999999987 44444332 21
Q ss_pred -----CCeEEEEEccCCC---EEEEEecCCcEEEEEECCCcceeeEEecc------------------------------
Q psy3710 186 -----APLSCIALNQTGT---RLATASYKGTLIRVFDTGSGQKLNELRRG------------------------------ 227 (424)
Q Consensus 186 -----~~v~~~~~~~~~~---~l~~~~~d~~~i~iwd~~~~~~~~~~~~~------------------------------ 227 (424)
.+........+|+ .++.++.+|. ++++|.++++.+...+..
T Consensus 300 d~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~ 378 (689)
T 1yiq_A 300 DYTATQHMILAELPIDGKPRKVLMQAPKNGF-FYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKR 378 (689)
T ss_dssp CCCCCSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSC
T ss_pred cccCCCCcEEEeeccCCcEEEEEEEECCCCe-EEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCe
Confidence 2222223333564 7888999999 999999999987433211
Q ss_pred ------------eeeeeecCCCCeEEEEeec--------------------------------------------CCeEE
Q psy3710 228 ------------LCVLCPNSNNSLLAFPGRK--------------------------------------------SGHVH 251 (424)
Q Consensus 228 ------------~~~~~~~~~~~~~~~~~~~--------------------------------------------dg~i~ 251 (424)
...++++|+...+++.... +|.|+
T Consensus 379 ~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~ 458 (689)
T 1yiq_A 379 NLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLI 458 (689)
T ss_dssp EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEE
T ss_pred eEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEE
Confidence 0125667777766653211 37899
Q ss_pred EEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec
Q psy3710 252 LVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR 309 (424)
Q Consensus 252 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 309 (424)
.||+.+++..- ....+ .+...-.+...+.+++.++.|+. ++.||.++|+.+.++.
T Consensus 459 A~D~~tG~~~W-~~~~~-~~~~~g~~~tagglvf~gt~dg~-l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 459 AWDPVKQQAAW-EVPYV-TIFNGGTLSTAGNLVFEGSADGR-VIAYAADTGEKLWEQP 513 (689)
T ss_dssp EEETTTTEEEE-EEEES-SSCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEEE
T ss_pred EEECCCCCeEe-EccCC-CCccCccceECCCEEEEECCCCc-EEEEECCCCccceeee
Confidence 99999887432 22222 33333456667889999999999 9999999999998764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.8e-09 Score=91.59 Aligned_cols=217 Identities=12% Similarity=0.097 Sum_probs=137.3
Q ss_pred CeEEEEECCC-----CcEEEEEeec---CCeEEEEe-----------c--CCceEEEe----eccEEEEeecCCC---ce
Q psy3710 80 NRVMIWDDLK-----KQVVICLEFN---APVKGVRL-----------R--RDKIVVVL----EGLIKVYTFIQCP---QQ 131 (424)
Q Consensus 80 ~~i~iwd~~~-----~~~~~~~~~~---~~v~~~~~-----------~--~~~~~~~~----~~~i~v~~~~~~~---~~ 131 (424)
..|.+-|+.. ++.+..+..+ .....+.| + +++.++.. ++.|+++|+.... +.
T Consensus 43 d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~ 122 (462)
T 2ece_A 43 DFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKI 122 (462)
T ss_dssp CEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEE
T ss_pred CeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCcee
Confidence 4566666665 7777776632 24444445 6 67766654 7899999986332 34
Q ss_pred eEEEee-----CCCCCeeEEEeecCCCCeEEEeeccC------CeEEEEeCCCCCCCCccccccc---CCeEEEEEccCC
Q psy3710 132 LHVFET-----NPNPKGLCVLCPNSNNSLLAFPGRKS------GHVHLVDLADPERPPLDIAAHE---APLSCIALNQTG 197 (424)
Q Consensus 132 ~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~d------g~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~ 197 (424)
..+++. ..+...-..+...|+| .+++ +..+ |.|.++|.++. +.+..+.... .--..+-|+|++
T Consensus 123 ~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs-~~g~~~g~~~g~v~vlD~~T~-~v~~~~~~~~~~~~~~Yd~~~~p~~ 199 (462)
T 2ece_A 123 IKVIEPEEVKKVSGYSRLHTVHCGPDA-IYIS-ALGNEEGEGPGGILMLDHYSF-EPLGKWEIDRGDQYLAYDFWWNLPN 199 (462)
T ss_dssp EEEECHHHHHHHHCEEEEEEEEECSSC-EEEE-EEEETTSCSCCEEEEECTTTC-CEEEECCSBCTTCCCCCCEEEETTT
T ss_pred eeeechhhcccccCCCcccceeECCCe-EEEE-cCCCcCCCCCCeEEEEECCCC-eEEEEEccCCCCccccceEEECCCC
Confidence 444420 0011123455678999 5444 4444 78999999986 5555554221 223468889999
Q ss_pred CEEEEEe-------------------cCCcEEEEEECCCcceeeEEecc-----eee--eeecCCCCeEEEEee-----c
Q psy3710 198 TRLATAS-------------------YKGTLIRVFDTGSGQKLNELRRG-----LCV--LCPNSNNSLLAFPGR-----K 246 (424)
Q Consensus 198 ~~l~~~~-------------------~d~~~i~iwd~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~-----~ 246 (424)
+.+++.. .+.+ |.+||+.+++.+.++..+ ... ++++|+++..+++.. .
T Consensus 200 ~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~-V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~L 278 (462)
T 2ece_A 200 EVLVSSEWAVPNTIEDGLKLEHLKDRYGNR-IHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDL 278 (462)
T ss_dssp TEEEECBCCCHHHHTTCCCTTTHHHHSCCE-EEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTC
T ss_pred CEEEEccCcCccccccccchhhhhhccCCE-EEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCC
Confidence 9888885 2566 999999998888887753 122 345999999888777 7
Q ss_pred CCeEEEEeCCCCCCCC-e-----------eec-------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 247 SGHVHLVDLADPERPP-L-----------DIA-------AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 247 dg~i~i~d~~~~~~~~-~-----------~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
+++|.+|....+.-.. . .+. +-......+.+||||++|+++......|.+||+.
T Consensus 279 ss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 279 SSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred CceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 8888776654321000 0 000 0024577889999999988887744338888875
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-09 Score=96.09 Aligned_cols=219 Identities=14% Similarity=0.136 Sum_probs=145.7
Q ss_pred ccCceEEEEeCCcCCCcCCCeEEEEECCCC----cEEEEEe--------ecCCeEEEEecCCceEEEe--e------ccE
Q psy3710 61 FRCNYLALVGGGTHPKYPNNRVMIWDDLKK----QVVICLE--------FNAPVKGVRLRRDKIVVVL--E------GLI 120 (424)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~----~~~~~~~--------~~~~v~~~~~~~~~~~~~~--~------~~i 120 (424)
.+.+++++.+.. +++|.++|+.+. +.++.++ .......+...|++.++.. + +.|
T Consensus 93 ~~r~~l~v~~l~------s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 93 IERRFLIVPGLR------SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGI 166 (462)
T ss_dssp CCSCEEEEEBTT------TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEE
T ss_pred ccCCEEEEccCC------CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeE
Confidence 667777776654 689999998755 6667663 1225677888999966654 3 579
Q ss_pred EEEeecCCCceeEEEeeCCCCCe-eEEEeecCCCCeEEEee------------------ccCCeEEEEeCCCCCCCCccc
Q psy3710 121 KVYTFIQCPQQLHVFETNPNPKG-LCVLCPNSNNSLLAFPG------------------RKSGHVHLVDLADPERPPLDI 181 (424)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~------------------~~dg~i~i~d~~~~~~~~~~~ 181 (424)
.++|.+ +.+.+..++....+.. ...+.++|+++.++++- .....|.+||+.++ +...++
T Consensus 167 ~vlD~~-T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-k~~~tI 244 (462)
T 2ece_A 167 LMLDHY-SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-KRIHSL 244 (462)
T ss_dssp EEECTT-TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-EEEEEE
T ss_pred EEEECC-CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-cEeeEE
Confidence 999986 7788887764433321 22467799999888731 24789999999975 444444
Q ss_pred ccc--cCCeEEEEE--ccCCCEEEEEec-----C-CcEEEEEECCCcce--eeEE---------------------ecce
Q psy3710 182 AAH--EAPLSCIAL--NQTGTRLATASY-----K-GTLIRVFDTGSGQK--LNEL---------------------RRGL 228 (424)
Q Consensus 182 ~~~--~~~v~~~~~--~~~~~~l~~~~~-----d-~~~i~iwd~~~~~~--~~~~---------------------~~~~ 228 (424)
..- ......+.| +|++++++.++. . ++ |.+|....++. .+.+ ....
T Consensus 245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~-V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p 323 (462)
T 2ece_A 245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSS-IWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV 323 (462)
T ss_dssp ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEE-EEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCce-EEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence 331 123445555 999999888876 4 45 77665543321 1111 0124
Q ss_pred eeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCC--eeeccC--------------CCCeEEEEEcCCCCEEEEEe
Q psy3710 229 CVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPP--LDIAAH--------------EAPLSCIALNQTGTRLATAS 288 (424)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~--~~~~~~--------------~~~v~~~~~~~~~~~l~~~~ 288 (424)
..+.++++++.+.++....+.|.+||+.....+. ..+... ......++++|||++|+++.
T Consensus 324 a~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 324 TDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 5577899999999988889999999997443221 112111 01357889999999988887
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-09 Score=93.24 Aligned_cols=219 Identities=10% Similarity=0.055 Sum_probs=143.3
Q ss_pred ceEEEEECCCCCe-eEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC
Q psy3710 12 GLLYAGFNQDQGC-FACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK 89 (424)
Q Consensus 12 ~V~~~~~s~~g~~-la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~ 89 (424)
.....+|+|++.. ++++..++ |..|+.++++... ... ...+..+.+.++++.++... ..|.+||..+
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~-~~~v~~i~~~~dg~l~v~~~---------~gl~~~d~~~ 118 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL-PFMGSALAKISDSKQLIASD---------DGLFLRDTAT 118 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC-SSCEEEEEEEETTEEEEEET---------TEEEEEETTT
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEC-CCcceEEEEeCCCeEEEEEC---------CCEEEEECCC
Confidence 3467899998554 44665545 9999988765432 222 45788899999988776542 4599999988
Q ss_pred CcEEEEEeec-----CCeEEEEecCCceEEEee-------ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEE
Q psy3710 90 KQVVICLEFN-----APVKGVRLRRDKIVVVLE-------GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLA 157 (424)
Q Consensus 90 ~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~-------~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (424)
++........ ..+..++++|++.+.+++ ....+|.+. +++... +.... .....++++|+++.++
T Consensus 119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~-~~~~~--~~~~~i~~s~dg~~ly 194 (326)
T 2ghs_A 119 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTK-LFADI--SIPNSICFSPDGTTGY 194 (326)
T ss_dssp CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEE-EEEEE--SSEEEEEECTTSCEEE
T ss_pred CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEE-eeCCC--cccCCeEEcCCCCEEE
Confidence 8765433221 357899999999766652 134555554 343322 22211 1245788999999887
Q ss_pred EeeccCCeEEEEeCC--CC-CCC-Cc---ccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---
Q psy3710 158 FPGRKSGHVHLVDLA--DP-ERP-PL---DIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG--- 227 (424)
Q Consensus 158 ~~~~~dg~i~i~d~~--~~-~~~-~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~--- 227 (424)
++...++.|.+||+. ++ ... .. .+.........+++.++|.+.++...++. |..||. +++.+..+..+
T Consensus 195 v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~-v~~~d~-~g~~~~~i~~~~~~ 272 (326)
T 2ghs_A 195 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYDT-DGNHIARYEVPGKQ 272 (326)
T ss_dssp EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEECT-TCCEEEEEECSCSB
T ss_pred EEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCE-EEEECC-CCCEEEEEECCCCC
Confidence 646678899999986 32 111 11 12223455788999999987777666778 999998 56666666543
Q ss_pred eeeeeec-CCCCeEEEEeecC
Q psy3710 228 LCVLCPN-SNNSLLAFPGRKS 247 (424)
Q Consensus 228 ~~~~~~~-~~~~~~~~~~~~d 247 (424)
+..+++. +++..++++...+
T Consensus 273 ~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 273 TTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEEEEEESTTSCEEEEEEBCT
T ss_pred cEEEEEecCCCCEEEEEecCC
Confidence 5667787 7777777755444
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.8e-10 Score=96.04 Aligned_cols=209 Identities=13% Similarity=0.035 Sum_probs=136.8
Q ss_pred eEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeE
Q psy3710 144 LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE 223 (424)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~ 223 (424)
.-...|+++++.|+.++..++.|..|+.. + . ...+..+...+..++++++|+++++...++. |..|+.. ++....
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g-~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~-v~~~~~~-g~~~~~ 121 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWRED-G-T-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRA-ITRSDAD-GQAHLL 121 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETT-S-C-EEEEEESCSCEEEEEECTTSCEEEEETTTTE-EEEECTT-SCEEEE
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeCC-C-C-EEEEeCCCCccceeeECCCCCEEEEECCCCE-EEEECCC-CCEEEE
Confidence 45678899999666558889999999884 3 2 3455556677899999999987766556677 9999986 543221
Q ss_pred Ee--c-----ceeeeeecCCCCeEEEE---eec-------------CCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCC
Q psy3710 224 LR--R-----GLCVLCPNSNNSLLAFP---GRK-------------SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT 280 (424)
Q Consensus 224 ~~--~-----~~~~~~~~~~~~~~~~~---~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 280 (424)
.. . ....+++.+++..++.- |.. .+.|+.+|..+++. ..+. .......++|+||
T Consensus 122 ~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~--~~~~-~~~~p~gl~~spd 198 (305)
T 3dr2_A 122 VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL--QRMA-DLDHPNGLAFSPD 198 (305)
T ss_dssp ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC--EEEE-EESSEEEEEECTT
T ss_pred EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE--EEEe-cCCCCcceEEcCC
Confidence 11 1 13457888888755421 221 35688888766542 2222 3456788999999
Q ss_pred CCEEEEEeCC------CcEEEEEECCCCce-----ee----------eeccCCcEEEEEeCCCcEEEEEccccccccccc
Q psy3710 281 GTRLATASYK------GTLIRVFDTGSGQK-----LN----------ELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQS 339 (424)
Q Consensus 281 ~~~l~~~~~d------~~~i~iwd~~~~~~-----~~----------~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 339 (424)
++.|+.+... +. |.+|++..+.. .. .+.++|++.++ +.+ .|.+|+.. ++.+..
T Consensus 199 g~~lyv~~~~~~~~~~~~-i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~~-g~~~~~-- 272 (305)
T 3dr2_A 199 EQTLYVSQTPEQGHGSVE-ITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDSD-GQLLGH-- 272 (305)
T ss_dssp SSEEEEEECCC---CCCE-EEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECTT-SCEEEE--
T ss_pred CCEEEEEecCCcCCCCCE-EEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECCC-CCEEEE--
Confidence 9988877665 57 99999875431 10 12356664443 344 48888874 343222
Q ss_pred cceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCc
Q psy3710 340 SLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGS 387 (424)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~ 387 (424)
+..+. .+..++|+++++.|++++.++.
T Consensus 273 --------------------~~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 273 --------------------IPTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp --------------------EECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred --------------------EECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 22222 3568899999999998887643
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-10 Score=101.47 Aligned_cols=269 Identities=12% Similarity=0.148 Sum_probs=165.8
Q ss_pred CCeEEEEECCCCcEEEEEee-cCCeEEEEecCCceEEEe-eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeE
Q psy3710 79 NNRVMIWDDLKKQVVICLEF-NAPVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLL 156 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (424)
++.|..|| .+++....... ...+.++...+++.+.+. .+ +..+|. +++.+..+...........+ . +..+
T Consensus 39 ~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~-l~~~d~--~g~~~~~~~~~~~~~~~~~~--~--~~~l 110 (330)
T 3hxj_A 39 NKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK-VYAINP--DGTEKWRFDTKKAIVSDFTI--F--EDIL 110 (330)
T ss_dssp TTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE-EEEECC--CGGGGGGSCC-----CCEEE--E--TTEE
T ss_pred CCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc-EEEECC--CCcEEEEEECCCCcccCceE--E--CCEE
Confidence 67899999 88888776653 334567777777765554 55 777774 44443333222211112222 2 4445
Q ss_pred EEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeee
Q psy3710 157 AFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCP 233 (424)
Q Consensus 157 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~ 233 (424)
.+ ++.++.|..+|.. + +.......+...+.++...+++. ++.++.++. |..+|.. ++....+..+ ...+..
T Consensus 111 ~v-~t~~~~l~~~d~~-g-~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~-l~~~d~~-g~~~~~~~~~~~~~~~~~~ 184 (330)
T 3hxj_A 111 YV-TSMDGHLYAINTD-G-TEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNY-LYAINPD-GTEKWRFKTNDAITSAASI 184 (330)
T ss_dssp EE-ECTTSEEEEECTT-S-CEEEEEECSSCCCSCCEECTTSC-EEEECTTSE-EEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred EE-EecCCEEEEEcCC-C-CEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCE-EEEECCC-CCEeEEEecCCCceeeeEE
Confidence 55 7888999999987 4 44444444445566677777765 566777788 9999998 7776666533 333444
Q ss_pred cCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeecc---
Q psy3710 234 NSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR--- 310 (424)
Q Consensus 234 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~--- 310 (424)
.+++..+ + ++ +.|..+| .+++. ..........+.++..+++|. |..++.++. +..+|. +++.+..+..
T Consensus 185 d~~g~l~-v-~t--~~l~~~d-~~g~~-~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~g-l~~~~~-~g~~~~~~~~~~~ 255 (330)
T 3hxj_A 185 GKDGTIY-F-GS--DKVYAIN-PDGTE-KWNFYAGYWTVTRPAISEDGT-IYVTSLDGH-LYAINP-DGTEKWRFKTGKR 255 (330)
T ss_dssp CTTCCEE-E-ES--SSEEEEC-TTSCE-EEEECCSSCCCSCCEECTTSC-EEEEETTTE-EEEECT-TSCEEEEEECSSC
T ss_pred cCCCEEE-E-Ee--CEEEEEC-CCCcE-EEEEccCCcceeceEECCCCe-EEEEcCCCe-EEEECC-CCCEeEEeeCCCC
Confidence 4555533 3 44 8899999 55442 223334446688888888875 555666777 888874 5655554431
Q ss_pred --------CCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEE
Q psy3710 311 --------DSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVI 382 (424)
Q Consensus 311 --------~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 382 (424)
.+..|..++.+|.|..+|. +++.+.. +..+...+..+...++++ |.++
T Consensus 256 ~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~----------------------~~~~~~~~~~~~~d~~g~-l~~g 311 (330)
T 3hxj_A 256 IESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWN----------------------FETGSWIIATPVIDENGT-IYFG 311 (330)
T ss_dssp CCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEE----------------------EECSSCCCSCCEECTTCC-EEEE
T ss_pred ccccceEcCCCeEEEecCCCCEEEECC-CCcEEEE----------------------EEcCCccccceEEcCCCE-EEEE
Confidence 2445677778888888885 4443221 112223344556667765 6779
Q ss_pred eccCcEEEEEec
Q psy3710 383 CADGSYYKFMFN 394 (424)
Q Consensus 383 ~~dg~v~~~~~~ 394 (424)
+.+|.+++....
T Consensus 312 t~~G~~~~~~~~ 323 (330)
T 3hxj_A 312 TRNGKFYALFNL 323 (330)
T ss_dssp CTTSCEEEEEC-
T ss_pred cCCCeEEEEecc
Confidence 999999998765
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.9e-09 Score=91.69 Aligned_cols=220 Identities=8% Similarity=-0.065 Sum_probs=142.6
Q ss_pred eeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe-eccEEEEeecCCCceeE
Q psy3710 55 GHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQLH 133 (424)
Q Consensus 55 ~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~ 133 (424)
....|.+++..++.+... ++.|..||..+++. ..+.....+.++++++++.+++. ...|.+||.. +++..
T Consensus 52 egp~~~~~~~~l~~~d~~------~~~i~~~d~~~~~~-~~~~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~-~g~~~- 122 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNIL------ERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTA-TGVLT- 122 (326)
T ss_dssp EEEEEETTTTEEEEEEGG------GTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETT-TCCEE-
T ss_pred cCCeEeCCCCEEEEEECC------CCEEEEEECCCCcE-EEEECCCcceEEEEeCCCeEEEEECCCEEEEECC-CCcEE-
Confidence 457788887777666643 58999999987754 34556678999999999876665 5568999975 44432
Q ss_pred EEeeCC---CCCeeEEEeecCCCCeEEEeec-----cCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEe-
Q psy3710 134 VFETNP---NPKGLCVLCPNSNNSLLAFPGR-----KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS- 204 (424)
Q Consensus 134 ~~~~~~---~~~~~~~~~~~~~~~~l~~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 204 (424)
.+.... ....+..+.++|+|++++.+.. ..+.|..++ ++ + ...+..+......++|+|+++.++.+.
T Consensus 123 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 123 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-K-VTKLFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-E-EEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-c-EEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence 222211 1234678899999987665221 124566666 32 2 233333445578999999998776554
Q ss_pred cCCcEEEEEECC--Cc-ce-----eeEEe---cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeE
Q psy3710 205 YKGTLIRVFDTG--SG-QK-----LNELR---RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLS 273 (424)
Q Consensus 205 ~d~~~i~iwd~~--~~-~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 273 (424)
.++. |.+||+. ++ +. ...+. .....+++++++. +.++...++.|..||.. ++ ....+..+...++
T Consensus 199 ~~~~-I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~-g~-~~~~i~~~~~~~~ 274 (326)
T 2ghs_A 199 KVNR-LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTD-GN-HIARYEVPGKQTT 274 (326)
T ss_dssp TTCE-EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTT-CC-EEEEEECSCSBEE
T ss_pred CCCE-EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCC-CC-EEEEEECCCCCcE
Confidence 4677 9999985 55 32 11221 1245677888875 44445567899999983 33 3344555666799
Q ss_pred EEEEc-CCCCEEEEEeCCC
Q psy3710 274 CIALN-QTGTRLATASYKG 291 (424)
Q Consensus 274 ~~~~~-~~~~~l~~~~~d~ 291 (424)
+++|+ |+++.|+.++..+
T Consensus 275 ~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 275 CPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEEEESTTSCEEEEEEBCT
T ss_pred EEEEecCCCCEEEEEecCC
Confidence 99998 8887776655443
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.8e-10 Score=98.22 Aligned_cols=261 Identities=10% Similarity=0.006 Sum_probs=158.0
Q ss_pred CCceEEEEECCCCCeeEeec--CCe-EEEEeCCcCccccc------ccccCCCeeeEEEeccCceEEEEeCCcCCCcCCC
Q psy3710 10 KNGLLYAGFNQDQGCFACGM--EDG-FRIYNCDPLKEKER------QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNN 80 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~--~~~-i~iw~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~ 80 (424)
...+..++++|+|+.+++.. .++ ++||.++.++.... ...+...+..+.+.++++.+++-.+. ....+.
T Consensus 16 ~~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~--~~~~~~ 93 (343)
T 2qe8_A 16 SLAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGN--QSKSVP 93 (343)
T ss_dssp SSCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHH--HHTSCC
T ss_pred CCCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCC--CcCCCC
Confidence 36789999999999888753 223 56666543432210 11134567888998887755443320 000047
Q ss_pred eEEEEECCCCcEEEEEeec-------CCeEEEEecCC-ceEEEe------eccEEEEeecCCCceeEEEeeCCCCCeeEE
Q psy3710 81 RVMIWDDLKKQVVICLEFN-------APVKGVRLRRD-KIVVVL------EGLIKVYTFIQCPQQLHVFETNPNPKGLCV 146 (424)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~-------~~v~~~~~~~~-~~~~~~------~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 146 (424)
.|.+||+.+++.+..+..+ ..+..++++++ +.+.++ ++.|.+||+. +++....+..+.....- .
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~-~g~~~r~~~~~~~~~~~-~ 171 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ-TGLAARVLQGYPGIAPE-D 171 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT-TCCEEEECTTCTTTSCC-S
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC-CCCEEEEecCCCccccc-c
Confidence 8999999999988877642 24688999975 454444 3579999985 55555544332111000 0
Q ss_pred EeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECC---Ccc----
Q psy3710 147 LCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG---SGQ---- 219 (424)
Q Consensus 147 ~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~---~~~---- 219 (424)
..+.+++..+.+ ...+|.+..|. ..+..|+|+|+|+.|+.+...+..+..++.. .+.
T Consensus 172 ~~~~~~g~~~~~-~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~ 235 (343)
T 2qe8_A 172 IDLVIDGVPVQI-GQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDA 235 (343)
T ss_dssp CCCEETTEECBE-ECTTSCEECCC---------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHH
T ss_pred cceeECCEEEEe-ccCCCceecee---------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChh
Confidence 223345655554 56666665442 2357899999999998888776425555432 110
Q ss_pred -e---eeEE--ecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec-cCCCCeEEEEEcCCCCEEEEEeCCCc
Q psy3710 220 -K---LNEL--RRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA-AHEAPLSCIALNQTGTRLATASYKGT 292 (424)
Q Consensus 220 -~---~~~~--~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~ 292 (424)
. +... ......+++++++ .++++...++.|.+||..+++. ..... .+...+.+++|.++++++++.+..+.
T Consensus 236 ~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~-~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 236 ELGSKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAY-KLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHH 313 (343)
T ss_dssp HHHTTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEE-EEEEECGGGSCEEEEEECTTSCEEEEECCGGG
T ss_pred hhhcceEecccCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCE-EEEEECCceecCCeeEECCCCcEEEEeCcccc
Confidence 0 1111 1234568888886 4556688889999999844431 11111 22456889999999887777766554
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-13 Score=120.02 Aligned_cols=247 Identities=14% Similarity=0.071 Sum_probs=137.5
Q ss_pred cCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCc-eEEEe--eccEEEEeecCCCceeEEEeeC
Q psy3710 62 RCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDK-IVVVL--EGLIKVYTFIQCPQQLHVFETN 138 (424)
Q Consensus 62 ~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~--~~~i~v~~~~~~~~~~~~~~~~ 138 (424)
+++.+++.+ .|+.|+.||..+|+.+.++.. +.+.+..+..++ .+++. ++.|+.||.+ +++.+..+..+
T Consensus 8 ~~~~v~~gs-------~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~-tG~~~w~~~~~ 78 (369)
T 2hz6_A 8 PETLLFVST-------LDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSK-NNEGLTKLPFT 78 (369)
T ss_dssp CTTEEEEEE-------TTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSCC
T ss_pred eCCEEEEEc-------CCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECC-CCceeeeeecc
Confidence 456666666 479999999999999998886 555555555666 44442 8999999986 66665554332
Q ss_pred CCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCc
Q psy3710 139 PNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG 218 (424)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~ 218 (424)
............ ++..+++ |+.++.++.||..++ +.+..+..+. ...++|++..+++++.++. |+.||.+++
T Consensus 79 ~~~~~~~sp~~~-~~~~v~~-g~~dg~v~a~D~~tG-~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~-v~a~d~~tG 150 (369)
T 2hz6_A 79 IPELVQASPCRS-SDGILYM-GKKQDIWYVIDLLTG-EKQQTLSSAF----ADSLSPSTSLLYLGRTEYT-ITMYDTKTR 150 (369)
T ss_dssp HHHHHTTCSCC------CCC-CEEEEEEEEECCC---------------------------EEEEEEEEE-EECCCSSSS
T ss_pred CccccccCceEe-cCCEEEE-EeCCCEEEEEECCCC-cEEEEecCCC----cccccccCCEEEEEecCCE-EEEEECCCC
Confidence 100000000111 3445665 889999999999987 5555554443 2345678889999999999 999999999
Q ss_pred ceeeEEecc-eeeeeecCCC---CeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEE-EEEcCCCCEE----EEEeC
Q psy3710 219 QKLNELRRG-LCVLCPNSNN---SLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSC-IALNQTGTRL----ATASY 289 (424)
Q Consensus 219 ~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l----~~~~~ 289 (424)
+.+..+... ....++..+. ..+ +.++.+|.++.||..+++.. -... ...++.. ..++++|... +.+
T Consensus 151 ~~~W~~~~~~~~~~~~~~~~~~~~~v-~~~~~dg~v~a~d~~tG~~~-W~~~-~~~pv~~~~~~~~dg~~~v~~~~~~-- 225 (369)
T 2hz6_A 151 ELRWNATYFDYAASLPEDDVDYKMSH-FVSNGDGLVVTVDSESGDVL-WIQN-YASPVVAFYVWQREGLRKVMHINVA-- 225 (369)
T ss_dssp SCCCEEEEEEECCBCCCCCTTCCCCE-EEEETSCEEEEECTTTCCEE-EEEE-CSSCEEEEEECTTSSCEEECCEEEE--
T ss_pred CEEEeEecccccCccccCCccccceE-EEECCCCEEEEEECCCCcEE-EEec-CCCceEEEEEecCCceEeccceeec--
Confidence 887666532 2223333321 334 44889999999999987742 2222 3444443 4455666432 122
Q ss_pred CCcEEEEEECCCCc----eeeeecc---------CCcEEEEEeCCCcEEEEEccc
Q psy3710 290 KGTLIRVFDTGSGQ----KLNELRR---------DSSYLCVSSDHGTVHVFSVDE 331 (424)
Q Consensus 290 d~~~i~iwd~~~~~----~~~~~~~---------~~~~l~~~~~d~~i~iw~~~~ 331 (424)
++. ++.+|..+|+ .+.++.. .+..++.++.||.++.++...
T Consensus 226 ~~~-l~~ld~~tG~~~~~~~W~~~~~~~~~sp~~~~g~lyv~~~~G~l~al~~~~ 279 (369)
T 2hz6_A 226 VET-LRYLTFMSGEVGRITKWKYPFPKETEAKSKLTPTLYVGKYSTSLYASPSMV 279 (369)
T ss_dssp HHH-HHHHHHHHHHHHHHHTSCCCCCCHHHHHHHSEEEECBEECSSCEECCEEEE
T ss_pred ccc-eeeeehhcCCcccceeeeeccCccccccccccceEEEecccCCEEecCccc
Confidence 334 6667766666 5554432 245788889999999998874
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.4e-10 Score=109.91 Aligned_cols=225 Identities=14% Similarity=0.186 Sum_probs=144.9
Q ss_pred CeeEEEeecCCCCeEEEee----ccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecC-----------
Q psy3710 142 KGLCVLCPNSNNSLLAFPG----RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK----------- 206 (424)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------- 206 (424)
..+..++|||||++|+.+. +....|++||+.++ +.+.. ..+......++|+ ||+.|+.++.+
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg-~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESK-QPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTC-SEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCC-CCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 3466789999999999733 33357999999986 32221 1111113578899 99999888766
Q ss_pred --CcEEEEEECCCcc----eeeEEec-c---eeeeeecCCCCeEEEEeec---CCeEEEEeCCCCCCCCeeeccCCCCeE
Q psy3710 207 --GTLIRVFDTGSGQ----KLNELRR-G---LCVLCPNSNNSLLAFPGRK---SGHVHLVDLADPERPPLDIAAHEAPLS 273 (424)
Q Consensus 207 --~~~i~iwd~~~~~----~~~~~~~-~---~~~~~~~~~~~~~~~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~ 273 (424)
.. |++|++.+.. .+...+. + .....++|+++.++++... .+.|+++|+.++......+..+.....
T Consensus 206 ~~~~-v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~ 284 (693)
T 3iuj_A 206 DQHK-VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV 284 (693)
T ss_dssp CCCE-EEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred CCcE-EEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence 34 8999998764 2333333 1 3567889999999886553 358999999887645555656666665
Q ss_pred EEEEcCCCCEEEEEeC-C---CcEEEEEECCCCce--ee----------eeccCCcEEEEEeCCC---cEEEEEcccccc
Q psy3710 274 CIALNQTGTRLATASY-K---GTLIRVFDTGSGQK--LN----------ELRRDSSYLCVSSDHG---TVHVFSVDEAQK 334 (424)
Q Consensus 274 ~~~~~~~~~~l~~~~~-d---~~~i~iwd~~~~~~--~~----------~~~~~~~~l~~~~~d~---~i~iw~~~~~~~ 334 (424)
.. ++++|..|+..+. + +. |..+++.++.. .. .++++++.|+....++ .|++|++.++.
T Consensus 285 ~~-~~~~g~~l~~~t~~~~~~~~-l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~- 361 (693)
T 3iuj_A 285 SL-VDNKGSTLYLLTNRDAPNRR-LVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKR- 361 (693)
T ss_dssp EE-EEEETTEEEEEECTTCTTCE-EEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSCE-
T ss_pred EE-EeccCCEEEEEECCCCCCCE-EEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCCe-
Confidence 55 6666665554443 3 46 89999987543 11 4566777776665443 68888887532
Q ss_pred ccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEecc----CcEEEEEec
Q psy3710 335 INKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICAD----GSYYKFMFN 394 (424)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d----g~v~~~~~~ 394 (424)
...+. .| ..+.+..+.++++++.|+....+ +.++.|++.
T Consensus 362 ~~~l~-------~p--------------~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 362 VREVA-------LP--------------GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp EEEEC-------CS--------------SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred eEEee-------cC--------------CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence 11110 00 01223455677888877766554 788888876
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.9e-09 Score=90.79 Aligned_cols=226 Identities=13% Similarity=-0.000 Sum_probs=143.6
Q ss_pred CCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe-ecCCeEEEEecCCceEEEe---eccEEEEeec
Q psy3710 51 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE-FNAPVKGVRLRRDKIVVVL---EGLIKVYTFI 126 (424)
Q Consensus 51 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---~~~i~v~~~~ 126 (424)
........|.++++.++.++.. ++.|..|+. +++. ..+. ....+..+++++++.++++ ++.|.+|+..
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~------~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLV------GRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETT------TTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CcCccCCeEeCCCCEEEEEECC------CCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 3445678899999977776643 689999998 5653 3444 5667899999999987776 3578888864
Q ss_pred CCCceeEEEeeCCC--CCeeEEEeecCCCCeEEEe---ecc-------------CCeEEEEeCCCCCCCCcccccccCCe
Q psy3710 127 QCPQQLHVFETNPN--PKGLCVLCPNSNNSLLAFP---GRK-------------SGHVHLVDLADPERPPLDIAAHEAPL 188 (424)
Q Consensus 127 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~---~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~v 188 (424)
++.......... ...+..+.++++|+++++- |.. .+.|..+|..++ + ...+. .....
T Consensus 116 --g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-~-~~~~~-~~~~p 190 (305)
T 3dr2_A 116 --GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-P-LQRMA-DLDHP 190 (305)
T ss_dssp --SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-C-CEEEE-EESSE
T ss_pred --CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC-c-EEEEe-cCCCC
Confidence 332221111111 1123457888999877741 221 256777777654 2 22333 44567
Q ss_pred EEEEEccCCCEEEEEecC------CcEEEEEECCCccee--eEEe----cceeeeeecCCCCeEEEEeecCCeEEEEeCC
Q psy3710 189 SCIALNQTGTRLATASYK------GTLIRVFDTGSGQKL--NELR----RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLA 256 (424)
Q Consensus 189 ~~~~~~~~~~~l~~~~~d------~~~i~iwd~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~ 256 (424)
..++|+|+++.|+.+... +. |.+|++..+... ..+. .....+++++++. +.+ +.. +.|.+|+..
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~-i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv-~~~-~gv~~~~~~ 266 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVE-ITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWS-SSG-TGVCVFDSD 266 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCE-EEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEE-CCS-SEEEEECTT
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCE-EEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEE-ecC-CcEEEECCC
Confidence 899999999988777665 67 999998754311 1111 1234577888887 333 333 459999984
Q ss_pred CCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEE
Q psy3710 257 DPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298 (424)
Q Consensus 257 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd 298 (424)
. + ....+..+. .+.+++|+|+++.|+.++.++ +..++
T Consensus 267 g-~-~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~--l~~~~ 303 (305)
T 3dr2_A 267 G-Q-LLGHIPTPG-TASNCTFDQAQQRLFITGGPC--LWMLP 303 (305)
T ss_dssp S-C-EEEEEECSS-CCCEEEECTTSCEEEEEETTE--EEEEE
T ss_pred C-C-EEEEEECCC-ceeEEEEeCCCCEEEEEcCCe--EEEEE
Confidence 3 2 233333333 588999999998888888765 44443
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.30 E-value=6.5e-11 Score=103.63 Aligned_cols=171 Identities=12% Similarity=0.092 Sum_probs=127.5
Q ss_pred CeEEEEecCCceEEEe--eccEEEEeecCCC----------ceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEE
Q psy3710 101 PVKGVRLRRDKIVVVL--EGLIKVYTFIQCP----------QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHL 168 (424)
Q Consensus 101 ~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i 168 (424)
++..+++++...++++ ...+.+|+++.-. +...... .+. +..++| ++.+|++ + .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~---lp~-V~~l~f--d~~~L~v-~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE---IPD-VIFVCF--HGDQVLV-S-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE---CTT-EEEEEE--ETTEEEE-E-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee---CCC-eeEEEE--CCCEEEE-E-cCCcEEE
Confidence 5888999988766655 4578889875211 1112222 234 788888 8999998 6 8899999
Q ss_pred EeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecCC
Q psy3710 169 VDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSG 248 (424)
Q Consensus 169 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg 248 (424)
||+.+. ........|..++.++.+.+. .++++..||. +.+||+.++.... +...+.+++|+|+| ++ .|..||
T Consensus 111 ~dv~sl-~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~-L~v~dl~~~~~~~-~~~~Vs~v~WSpkG--~~-vg~~dg 182 (388)
T 1xip_A 111 LDLEEL-SEFRTVTSFEKPVFQLKNVNN--TLVILNSVND-LSALDLRTKSTKQ-LAQNVTSFDVTNSQ--LA-VLLKDR 182 (388)
T ss_dssp EESSST-TCEEEEEECSSCEEEEEECSS--EEEEEETTSE-EEEEETTTCCEEE-EEESEEEEEECSSE--EE-EEETTS
T ss_pred EEchhh-hccCccceeecceeeEEecCC--CEEEEECCCC-EEEEEccCCcccc-ccCCceEEEEcCCc--eE-EEEcCC
Confidence 999876 344456677888988887764 3888999999 9999999877653 56679999999999 33 489999
Q ss_pred eEEEEeCCCCCCC-Ceee------c---cCCCCeEEEEEcCCCCEEEEE
Q psy3710 249 HVHLVDLADPERP-PLDI------A---AHEAPLSCIALNQTGTRLATA 287 (424)
Q Consensus 249 ~i~i~d~~~~~~~-~~~~------~---~~~~~v~~~~~~~~~~~l~~~ 287 (424)
.+++|+....... ...+ . +|...|.++.|.+++.++++=
T Consensus 183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 9999988765521 2223 2 378899999999999888773
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-07 Score=89.93 Aligned_cols=338 Identities=9% Similarity=0.107 Sum_probs=200.5
Q ss_pred eEEEEECCCCCeeEeecCCeEEEEeCCcCccccc-ccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCc
Q psy3710 13 LLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKER-QDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ 91 (424)
Q Consensus 13 V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~ 91 (424)
|.++...++|.+.+....+|+..|+..+.+.... ...+...|..+....++...+... ++.+..||..+++
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~--------~~Gl~~~~~~~~~ 246 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATE--------GAGLFLINPKTKE 246 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEB--------SSCEEEEETTTTE
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEEC--------CCCeEEEeCCCCe
Confidence 8888888888766644445799999766554221 111244566666666666555433 3468999987765
Q ss_pred EEEEEee---------cCCeEEEEecCCce-EEEeeccEEEEeecCCCceeEEEeeCC------CCCeeEEEeecCCCCe
Q psy3710 92 VVICLEF---------NAPVKGVRLRRDKI-VVVLEGLIKVYTFIQCPQQLHVFETNP------NPKGLCVLCPNSNNSL 155 (424)
Q Consensus 92 ~~~~~~~---------~~~v~~~~~~~~~~-~~~~~~~i~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 155 (424)
... +.+ ...|.++...+++. ++++++.|.+|+.. ... ...+.... ....+.++...++|.+
T Consensus 247 ~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~-~~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l 323 (795)
T 4a2l_A 247 IKN-YLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEG-TDS-FASYSSNPVENGSLSQRSVRSIFMDSQGGM 323 (795)
T ss_dssp EEE-ECCCTTCTTSCSCSBEEEEEECTTSCEEEEESSCEEEEETT-TTE-EEEECCCTTSTTSCSSSCEEEEEECTTSCE
T ss_pred EEE-eecCCCCccccCCCeEEEEEEcCCCCEEEEeCChhheEcCC-CCe-EEEEecCCCCCCCCCCCcEEEEEEeCCcCE
Confidence 433 322 24689999887774 55566678889864 333 33332111 1234778888888876
Q ss_pred EEEeeccCCeEEEEeCCCCCCCCcccc-------cccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe---
Q psy3710 156 LAFPGRKSGHVHLVDLADPERPPLDIA-------AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR--- 225 (424)
Q Consensus 156 l~~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~--- 225 (424)
.+ |+.++-|..|+.... ....+. -....|.++...++|. |..|+.++. |..||..+++...-..
T Consensus 324 Wi--gt~~~Gl~~~~~~~~--~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~G-l~~~~~~~~~~~~~~~~~~ 397 (795)
T 4a2l_A 324 WL--GTYFGGLNYYHPIRN--RFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGG-LNLYNPITQRFTSYTLQED 397 (795)
T ss_dssp EE--EESSSCEEEECGGGG--SSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSC-EEEECTTTCCEEEECCC--
T ss_pred EE--EECCCCeEEeCCCcc--cceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCC-eEEEcCCCCcEEEEecCCC
Confidence 65 777788899987653 111111 1245699999888875 555777766 9999987765432211
Q ss_pred --------cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec-----cCCCCeEEEEEcCCCCEEEEEeCCCc
Q psy3710 226 --------RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA-----AHEAPLSCIALNQTGTRLATASYKGT 292 (424)
Q Consensus 226 --------~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~ 292 (424)
..+..++..+++..+.+ |+.++-|..||..+++. ..+. .....|.++...++|++.+.. .+|
T Consensus 398 ~~~~~l~~~~v~~i~~d~~g~~lWi-gt~~~Gl~~~d~~~~~~--~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G- 472 (795)
T 4a2l_A 398 ESARGIGSNNIKAVYVDEKKSLVYI-GTHAGGLSILHRNSGQV--ENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA- 472 (795)
T ss_dssp ----CCSCSCEEEEEEETTTTEEEE-EETTTEEEEEETTTCCE--EEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-
T ss_pred CcccCCCCccEEEEEEcCCCCEEEE-EeCcCceeEEeCCCCcE--EEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-
Confidence 12445555666653444 77878899999887542 1111 234679999999888755544 444
Q ss_pred EEEEEECCCCceeee----------------e--ccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCC
Q psy3710 293 LIRVFDTGSGQKLNE----------------L--RRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSS 354 (424)
Q Consensus 293 ~i~iwd~~~~~~~~~----------------~--~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (424)
+.+||..+++.... + .++|.+.+ |+. +-|..|+..+++. ........
T Consensus 473 -l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~---------- 537 (795)
T 4a2l_A 473 -LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWI-GGE-EGLSVFKQEGLDI--QKASILPV---------- 537 (795)
T ss_dssp -EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEE-EES-SCEEEEEEETTEE--EECCCSCS----------
T ss_pred -eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEE-EeC-CceEEEeCCCCeE--EEecCCCC----------
Confidence 89999877543221 1 13344433 334 4577888766442 11100000
Q ss_pred ceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 355 WSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
...+...+..+...++|+..+ ++.. -+..|+..
T Consensus 538 -----~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~d~~ 570 (795)
T 4a2l_A 538 -----SNVTKLFTNCIYEASNGIIWV-GTRE-GFYCFNEK 570 (795)
T ss_dssp -----CGGGGSCEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred -----CCCCCCeeEEEEECCCCCEEE-EeCC-CceeECCC
Confidence 001223466777777877444 4444 56666643
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-07 Score=91.10 Aligned_cols=273 Identities=9% Similarity=0.090 Sum_probs=171.4
Q ss_pred CCceEEEEECCCCCeeEeecCCeEEEEeCCcCcccccc-------cccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeE
Q psy3710 10 KNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQ-------DFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 82 (424)
...|.++...++|.+.+....+|+.+|+..+.+..... ......|.++....++...+... +-|
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~---------~Gl 284 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF---------NDL 284 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES---------SCE
T ss_pred CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC---------Chh
Confidence 46788998888887666555668999998765432111 11245677777776666554332 368
Q ss_pred EEEECCCCcEEEEEe--------ecCCeEEEEecCCce-EEEe-eccEEEEeecCCCceeEEEeeCC-----CCCeeEEE
Q psy3710 83 MIWDDLKKQVVICLE--------FNAPVKGVRLRRDKI-VVVL-EGLIKVYTFIQCPQQLHVFETNP-----NPKGLCVL 147 (424)
Q Consensus 83 ~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~-~~~~-~~~i~v~~~~~~~~~~~~~~~~~-----~~~~~~~~ 147 (424)
.+||..+++...... ....|.++...+++. .+++ ++.|..|+.. ... ...+.... ....+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~-~~~-~~~~~~~~~~~~l~~~~V~~i 362 (795)
T 4a2l_A 285 NIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPI-RNR-FKNIRNIPYKNSLSDNVVSCI 362 (795)
T ss_dssp EEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGG-GGS-SEEECCCTTSSSCSCSSEEEE
T ss_pred heEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCC-ccc-ceEEcCCCCCCCCCCCeeEEE
Confidence 999987766443221 125689999988874 5555 5789999864 222 22222111 12347788
Q ss_pred eecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccc---------cccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCc
Q psy3710 148 CPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA---------AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG 218 (424)
Q Consensus 148 ~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~ 218 (424)
...+++.+.+ |..++-|..|+..++ ....+. .....|.++...++|+.|..|+.++. |..+|..++
T Consensus 363 ~~d~~g~lWi--Gt~~~Gl~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~G-l~~~d~~~~ 437 (795)
T 4a2l_A 363 VEDKDKNLWI--GTNDGGLNLYNPITQ--RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGG-LSILHRNSG 437 (795)
T ss_dssp EECTTSCEEE--EESSSCEEEECTTTC--CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTE-EEEEETTTC
T ss_pred EECCCCCEEE--EECCCCeEEEcCCCC--cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCc-eeEEeCCCC
Confidence 8888887655 788888999998764 222221 12467899998888875777777777 999998877
Q ss_pred ceeeEEe-------cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeee-----ccCCCCeEEEEEcCCCCEEEE
Q psy3710 219 QKLNELR-------RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDI-----AAHEAPLSCIALNQTGTRLAT 286 (424)
Q Consensus 219 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~ 286 (424)
+...-.. ..+..+...+++...+ |+. +.+.+||..+++...... ......|.++...++|++.+.
T Consensus 438 ~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi--gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig 514 (795)
T 4a2l_A 438 QVENFNQRNSQLVNENVYAILPDGEGNLWL--GTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG 514 (795)
T ss_dssp CEEEECTTTSCCSCSCEEEEEECSSSCEEE--EES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE
T ss_pred cEEEeecCCCCcCCCeeEEEEECCCCCEEE--Eec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEE
Confidence 5432211 1245555566555444 444 568889987643111100 112467899999998876655
Q ss_pred EeCCCcEEEEEECCCCce
Q psy3710 287 ASYKGTLIRVFDTGSGQK 304 (424)
Q Consensus 287 ~~~d~~~i~iwd~~~~~~ 304 (424)
.. . . +..||..+++.
T Consensus 515 t~-~-G-l~~~~~~~~~~ 529 (795)
T 4a2l_A 515 GE-E-G-LSVFKQEGLDI 529 (795)
T ss_dssp ES-S-C-EEEEEEETTEE
T ss_pred eC-C-c-eEEEeCCCCeE
Confidence 44 4 4 88998876554
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.3e-10 Score=98.00 Aligned_cols=285 Identities=9% Similarity=0.068 Sum_probs=165.7
Q ss_pred EEEECCCCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEE
Q psy3710 15 YAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVI 94 (424)
Q Consensus 15 ~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 94 (424)
++....+|.+.+.+.+++|..|| .+++.......+...+..+....++... +.+ ++ +..+|. +++.+.
T Consensus 24 ~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t--------~~-l~~~d~-~g~~~~ 91 (330)
T 3hxj_A 24 SPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIY-FGS--------DK-VYAINP-DGTEKW 91 (330)
T ss_dssp CCEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEEC-CSS--------CE-EEEECC-CGGGGG
T ss_pred CceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEE-Eec--------Cc-EEEECC-CCcEEE
Confidence 34555666544444455599999 7777654444433344444444444432 222 34 888885 665544
Q ss_pred EEeecC-CeEEEEecCCceEEEe-eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCC
Q psy3710 95 CLEFNA-PVKGVRLRRDKIVVVL-EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLA 172 (424)
Q Consensus 95 ~~~~~~-~v~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~ 172 (424)
.+.... ......+..+..++++ ++.+..+|.. ++........... +.++...+++..+ + ++.++.|..+|..
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~--g~~~~~~~~~~~~--~~~~~~~~~g~l~-v-gt~~~~l~~~d~~ 165 (330)
T 3hxj_A 92 RFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD--GTEKWRFKTKKAI--YATPIVSEDGTIY-V-GSNDNYLYAINPD 165 (330)
T ss_dssp GSCC-----CCEEEETTEEEEECTTSEEEEECTT--SCEEEEEECSSCC--CSCCEECTTSCEE-E-ECTTSEEEEECTT
T ss_pred EEECCCCcccCceEECCEEEEEecCCEEEEEcCC--CCEEEEEcCCCce--eeeeEEcCCCEEE-E-EcCCCEEEEECCC
Confidence 443222 2222333344455555 7889999874 4555554433322 3334455566644 4 7788999999988
Q ss_pred CCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEeecCCe
Q psy3710 173 DPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGRKSGH 249 (424)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~ 249 (424)
+ .....+......+.++...+++...+ ++ +. +..+| .+++....+..+ +..+...+++. +.+ ++.++.
T Consensus 166 -g-~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~-l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v-~t~~~g 236 (330)
T 3hxj_A 166 -G-TEKWRFKTNDAITSAASIGKDGTIYF-GS--DK-VYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYV-TSLDGH 236 (330)
T ss_dssp -S-CEEEEEECSSCCCSCCEECTTCCEEE-ES--SS-EEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEE-EETTTE
T ss_pred -C-CEeEEEecCCCceeeeEEcCCCEEEE-Ee--CE-EEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEE-EcCCCe
Confidence 4 44444444455677777777776554 44 66 99999 777776665533 44455555553 333 777888
Q ss_pred EEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeecc-----------CCcEEEEE
Q psy3710 250 VHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR-----------DSSYLCVS 318 (424)
Q Consensus 250 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-----------~~~~l~~~ 318 (424)
+..+|.. ++ ....+......+..+.+.+++ .|..++.++. |..+|. +++.+..+.. .+..|..+
T Consensus 237 l~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~gg-l~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~g 311 (330)
T 3hxj_A 237 LYAINPD-GT-EKWRFKTGKRIESSPVIGNTD-TIYFGSYDGH-LYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFG 311 (330)
T ss_dssp EEEECTT-SC-EEEEEECSSCCCSCCEECTTS-CEEEECTTCE-EEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEE
T ss_pred EEEECCC-CC-EeEEeeCCCCccccceEcCCC-eEEEecCCCC-EEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEE
Confidence 9988743 22 223333333334455666565 5667788878 999996 6776665431 23346667
Q ss_pred eCCCcEEEEEccc
Q psy3710 319 SDHGTVHVFSVDE 331 (424)
Q Consensus 319 ~~d~~i~iw~~~~ 331 (424)
+.+|.+++...+.
T Consensus 312 t~~G~~~~~~~~~ 324 (330)
T 3hxj_A 312 TRNGKFYALFNLE 324 (330)
T ss_dssp CTTSCEEEEEC--
T ss_pred cCCCeEEEEeccc
Confidence 8888888877655
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.4e-08 Score=84.08 Aligned_cols=246 Identities=9% Similarity=-0.018 Sum_probs=150.4
Q ss_pred CCeeEeecCCeEEEEeCCcCcccc-----cccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEE
Q psy3710 22 QGCFACGMEDGFRIYNCDPLKEKE-----RQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICL 96 (424)
Q Consensus 22 g~~la~g~~~~i~iw~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 96 (424)
|++|..+..+.|+.++++...... ....+......+++.++++.+..+... .+.|..++...+.....+
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~------~~~I~~~~~~g~~~~~~~ 74 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS------EPSIGRASLHGGEPTTII 74 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT------TTEEEEEESSSCCCEEEE
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECC------CCEEEEEecCCCCcEEEE
Confidence 345666655558888877554311 111123346678899888888777654 589999998765543333
Q ss_pred ee-cCCeEEEEecCC-ceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeecc--CCeEEEE
Q psy3710 97 EF-NAPVKGVRLRRD-KIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRK--SGHVHLV 169 (424)
Q Consensus 97 ~~-~~~v~~~~~~~~-~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--dg~i~i~ 169 (424)
.. ......+++.++ +.+.++ .+.|.++++. +.....+... .......++++|++..|.++... .+.|..+
T Consensus 75 ~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~--g~~~~~~~~~-~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~ 151 (267)
T 1npe_A 75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD--GTQRRVLFDT-GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS 151 (267)
T ss_dssp CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECS-SCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC--CCCEEEEEEC-CCCCccEEEEeeCCCEEEEEECCCCCcEEEEE
Confidence 22 257889999985 444444 5689999875 2222222211 11235678899976666652333 4788888
Q ss_pred eCCCCCCCCcccc-cccCCeEEEEEccCCCEEEEEec-CCcEEEEEECCCcceeeEEecc--eeeeeecCCCCeEEEEee
Q psy3710 170 DLADPERPPLDIA-AHEAPLSCIALNQTGTRLATASY-KGTLIRVFDTGSGQKLNELRRG--LCVLCPNSNNSLLAFPGR 245 (424)
Q Consensus 170 d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 245 (424)
+++.. ....+. ..-.....++++|+++.|+.+.. .+. |..+|.........+... ...++ .++..++++..
T Consensus 152 ~~dg~--~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~-I~~~~~~g~~~~~~~~~~~~P~gi~--~d~~~lyva~~ 226 (267)
T 1npe_A 152 HMDGT--NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR-AECLNPAQPGRRKVLEGLQYPFAVT--SYGKNLYYTDW 226 (267)
T ss_dssp ETTSC--CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTEEEEEEEEECCCSEEEEE--EETTEEEEEET
T ss_pred ecCCC--CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCE-EEEEecCCCceEEEecCCCCceEEE--EeCCEEEEEEC
Confidence 88753 222221 22345789999998777665554 466 999999765433333322 22333 34677877677
Q ss_pred cCCeEEEEeCCCCCCCCeeeccC-CCCeEEEEEcCCCC
Q psy3710 246 KSGHVHLVDLADPERPPLDIAAH-EAPLSCIALNQTGT 282 (424)
Q Consensus 246 ~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~ 282 (424)
..+.|..+|..+++. ...+... ......+++.|++.
T Consensus 227 ~~~~v~~~d~~~g~~-~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 227 KTNSVIAMDLAISKE-MDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTTEEEEEETTTTEE-EEEECCSSCCCCCCEEEECSCC
T ss_pred CCCeEEEEeCCCCCc-eEEEccccccccceeeecCccC
Confidence 789999999987653 2333222 22467788887754
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-09 Score=95.09 Aligned_cols=259 Identities=12% Similarity=0.020 Sum_probs=158.3
Q ss_pred eeEEEeecCCCCeEEEeec--cCCeEEEEeCCCCCCCCcc-------cccccCCeEEEEEccCCCEEEEEec-----CCc
Q psy3710 143 GLCVLCPNSNNSLLAFPGR--KSGHVHLVDLADPERPPLD-------IAAHEAPLSCIALNQTGTRLATASY-----KGT 208 (424)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~--~dg~i~i~d~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~ 208 (424)
....++++++|+.+++ .. .++.++||.+.++ + +.. ...|-..+..++++++|+++++-.. +..
T Consensus 18 ~p~~va~~~~g~~~v~-~~~~~~~~~~l~~~~~g-~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 18 APGNITLTPDGRLFLS-LHQFYQPEMQVAELTQD-G-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp CEEEEEECTTSCEEEE-ECGGGCCSCSEEEEETT-E-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CcceEEECCCCCEEEE-eCCCCCCceEEEEECCC-C-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 3667889999988776 32 2342445544332 2 121 1234567999999999876665544 567
Q ss_pred EEEEEECCCcceeeEEecc---------eeeeeecCCCCeEEEEee---cCCeEEEEeCCCCCCCCeeeccCCCCeE-EE
Q psy3710 209 LIRVFDTGSGQKLNELRRG---------LCVLCPNSNNSLLAFPGR---KSGHVHLVDLADPERPPLDIAAHEAPLS-CI 275 (424)
Q Consensus 209 ~i~iwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~v~-~~ 275 (424)
|.+||+.+++.+..+..+ ...+++++++..++++.. .++.|.+||+.+++ ....+..|..... ..
T Consensus 95 -i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~-~~r~~~~~~~~~~~~~ 172 (343)
T 2qe8_A 95 -LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL-AARVLQGYPGIAPEDI 172 (343)
T ss_dssp -EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC-EEEECTTCTTTSCCSC
T ss_pred -EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC-EEEEecCCCccccccc
Confidence 999999999877666532 356788887777777666 78899999998765 2333333322110 13
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEECCCCceeeeeccCCcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCc
Q psy3710 276 ALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSW 355 (424)
Q Consensus 276 ~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (424)
.+.++|..+.+.+.++. ++.|.. +..--.++|+++.|+.+..++. ++|.+........ . ........
T Consensus 173 ~~~~~g~~~~~~~~~g~-~~~~~~--~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~-~-~~~~~~~~------- 239 (343)
T 2qe8_A 173 DLVIDGVPVQIGQPDGT-VIRPHL--GVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNL-Q-LTDAELGS------- 239 (343)
T ss_dssp CCEETTEECBEECTTSC-EECCCC--CEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCT-T-CCHHHHHT-------
T ss_pred ceeECCEEEEeccCCCc-eeceec--ccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCC-C-CChhhhhc-------
Confidence 45567888888888998 887753 2233568899998888877663 4555543111000 0 00000000
Q ss_pred eeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCCcceeeee------ehhhheecCCCceeeEEE
Q psy3710 356 SFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWRDV------YIQFLEMTNDSNLLSCIE 421 (424)
Q Consensus 356 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~~~~~------~~~~~~~~~d~~~l~~~~ 421 (424)
......+.+....++++++|+.+++...++.|.+|+.. +++..... +...+.+.++|+++++..
T Consensus 240 -~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~-~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 240 -KIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSA-DRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp -TCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETT-TTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred -ceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECC-CCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 00001112234468999999988888889999999973 34432211 223566788988877653
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-08 Score=96.88 Aligned_cols=262 Identities=13% Similarity=0.139 Sum_probs=163.8
Q ss_pred CceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCC------------eEEEEecCCceEEEe-eccEEEEeecCCC
Q psy3710 63 CNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAP------------VKGVRLRRDKIVVVL-EGLIKVYTFIQCP 129 (424)
Q Consensus 63 ~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~------------v~~~~~~~~~~~~~~-~~~i~v~~~~~~~ 129 (424)
+..+++.+ .++.|.-+|..+|+.+.++..... -..+.+..+..++.+ ++.|..+|.+ ++
T Consensus 66 ~g~vyv~~-------~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~-tG 137 (668)
T 1kv9_A 66 DGVIYTSM-------SWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAK-TG 137 (668)
T ss_dssp TTEEEEEE-------GGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETT-TC
T ss_pred CCEEEEEC-------CCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECC-CC
Confidence 45555555 368999999999999998863221 122344444444444 8999999986 78
Q ss_pred ceeEEEeeCCCCCeeEEEeecC--CCCeEEEeecc------CCeEEEEeCCCCCCCCccccc------------------
Q psy3710 130 QQLHVFETNPNPKGLCVLCPNS--NNSLLAFPGRK------SGHVHLVDLADPERPPLDIAA------------------ 183 (424)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~------dg~i~i~d~~~~~~~~~~~~~------------------ 183 (424)
+.+..+........ ..+..+| .+..+++ +.. +|.|..+|..++ +.+-.+..
T Consensus 138 ~~~W~~~~~~~~~~-~~~~~~P~v~~~~v~v-g~~~~~~~~~g~v~a~D~~tG-~~~W~~~~~~~~p~~~~~~~~~~~~~ 214 (668)
T 1kv9_A 138 KAIWSQQTTDPAKP-YSITGAPRVVKGKVII-GNGGAEYGVRGFVSAYDADTG-KLAWRFYTVPGDPALPYEHPELREAA 214 (668)
T ss_dssp CEEEEEECSCTTSS-CBCCSCCEEETTEEEE-CCBCTTTCCBCEEEEEETTTC-CEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred CEeeeeccCCCCCc-ceecCCCEEECCEEEE-eCCCCCcCCCCEEEEEECCCC-cEEEEecccCCCCCcccccccccccc
Confidence 88877765321100 0000011 1334444 432 589999999887 33332221
Q ss_pred -------------ccCCeEEEEEccCCCEEEEEecCC-------------------cEEEEEECCCcceeeEEecc----
Q psy3710 184 -------------HEAPLSCIALNQTGTRLATASYKG-------------------TLIRVFDTGSGQKLNELRRG---- 227 (424)
Q Consensus 184 -------------~~~~v~~~~~~~~~~~l~~~~~d~-------------------~~i~iwd~~~~~~~~~~~~~---- 227 (424)
+......+++.|+...++.++.++ . |..+|.++++.+-.++..
T Consensus 215 ~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~-v~AlD~~tG~~~W~~~~~~~~~ 293 (668)
T 1kv9_A 215 KTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSS-ILAIRPDTGKLAWHYQVTPGDS 293 (668)
T ss_dssp TTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE-EEEECTTTCCEEEEEESSTTCC
T ss_pred ccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee-EEEEcCCCCceeeEeecCCCcc
Confidence 011122468888888888877654 5 899999999998877642
Q ss_pred --------eeeeeecCCCC--eEEEEeecCCeEEEEeCCCCCCCCee----------eccC-CCC---------------
Q psy3710 228 --------LCVLCPNSNNS--LLAFPGRKSGHVHLVDLADPERPPLD----------IAAH-EAP--------------- 271 (424)
Q Consensus 228 --------~~~~~~~~~~~--~~~~~~~~dg~i~i~d~~~~~~~~~~----------~~~~-~~~--------------- 271 (424)
.....+..++. .+++.++.+|.++++|..+++..... +... ..+
T Consensus 294 wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~ 373 (668)
T 1kv9_A 294 WDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVM 373 (668)
T ss_dssp SCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEE
T ss_pred ccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEE
Confidence 11111122443 35666899999999999988742110 0000 000
Q ss_pred ---------eEEEEEcCCCCEEEEEe------------------------------------CCCcEEEEEECCCCceee
Q psy3710 272 ---------LSCIALNQTGTRLATAS------------------------------------YKGTLIRVFDTGSGQKLN 306 (424)
Q Consensus 272 ---------v~~~~~~~~~~~l~~~~------------------------------------~d~~~i~iwd~~~~~~~~ 306 (424)
-..++++|+...++... .++. |..||+.+|+.+.
T Consensus 374 ~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~-l~A~D~~tG~~~W 452 (668)
T 1kv9_A 374 WPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGA-LLAWDPVKQKAAW 452 (668)
T ss_dssp SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEE-EEEEETTTTEEEE
T ss_pred CCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccce-EEEEeCCCCcEEE
Confidence 01267888766655421 2377 9999999999887
Q ss_pred eec-----------cCCcEEEEEeCCCcEEEEEccccccccc
Q psy3710 307 ELR-----------RDSSYLCVSSDHGTVHVFSVDEAQKINK 337 (424)
Q Consensus 307 ~~~-----------~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 337 (424)
++. ..+.+++.++.|+.++.||..+++.+-+
T Consensus 453 ~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~ 494 (668)
T 1kv9_A 453 KVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ 494 (668)
T ss_dssp EEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheE
Confidence 653 3567888899999999999999887654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=9.9e-12 Score=109.90 Aligned_cols=173 Identities=14% Similarity=0.179 Sum_probs=103.4
Q ss_pred CCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecceee-
Q psy3710 152 NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCV- 230 (424)
Q Consensus 152 ~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~~- 230 (424)
++..+++ ++.||.|+.||..++ +.+..+.. +.+.+..+..++..+++++.|+. |+.||..+++.+..++.+...
T Consensus 8 ~~~~v~~-gs~dg~v~a~d~~tG-~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~-l~a~d~~tG~~~w~~~~~~~~~ 82 (369)
T 2hz6_A 8 PETLLFV-STLDGSLHAVSKRTG-SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGS-LYTLGSKNNEGLTKLPFTIPEL 82 (369)
T ss_dssp CTTEEEE-EETTSEEEEEETTTC-CEEEEEEC--CCSCCCC-----CCEEECTTTCC-EEEC-----CCSEECSCCHHHH
T ss_pred eCCEEEE-EcCCCEEEEEECCCC-CEEEEecC--CCceecceEcCCCEEEEeCCCCE-EEEEECCCCceeeeeeccCccc
Confidence 4677777 899999999999987 55555544 45555556667778888889999 999999999877665433110
Q ss_pred eeecC---CCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeee
Q psy3710 231 LCPNS---NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE 307 (424)
Q Consensus 231 ~~~~~---~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~ 307 (424)
...+| .+. .+++++.++.++.||..+++... .+..+. ...++|++..+++++.|+. |+.||.++|+.+++
T Consensus 83 ~~~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w-~~~~~~----~~~~~p~~~~v~~~~~dg~-v~a~d~~tG~~~W~ 155 (369)
T 2hz6_A 83 VQASPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQ-TLSSAF----ADSLSPSTSLLYLGRTEYT-ITMYDTKTRELRWN 155 (369)
T ss_dssp HTTCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEE-EECCCSSSSSCCCE
T ss_pred cccCceEecCC-EEEEEeCCCEEEEEECCCCcEEE-EecCCC----cccccccCCEEEEEecCCE-EEEEECCCCCEEEe
Confidence 01111 333 34558889999999999887532 222222 2345678889999999999 99999999998776
Q ss_pred ec--------cCC-----cEEEEEeCCCcEEEEEcccccccc
Q psy3710 308 LR--------RDS-----SYLCVSSDHGTVHVFSVDEAQKIN 336 (424)
Q Consensus 308 ~~--------~~~-----~~l~~~~~d~~i~iw~~~~~~~~~ 336 (424)
+. .++ ..+++++.||.|+.||..+|+.+-
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W 197 (369)
T 2hz6_A 156 ATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLW 197 (369)
T ss_dssp EEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred EecccccCccccCCccccceEEEECCCCEEEEEECCCCcEEE
Confidence 53 122 567778899999999999987643
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-06 Score=84.92 Aligned_cols=271 Identities=14% Similarity=0.154 Sum_probs=161.3
Q ss_pred CceEEEEECCCCCeeEeecCCeEEEEeCCcCcccccc-------cccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEE
Q psy3710 11 NGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQ-------DFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVM 83 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~ 83 (424)
..|.++...++|.+.+... +|+.+||..+.+..... ......|.++....++...+... .+-|.
T Consensus 211 ~~i~~i~~d~~g~lwigt~-~Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~--------~~Gl~ 281 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGTS-KGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATE--------LNGIM 281 (781)
T ss_dssp SSEEEEEECTTCCEEEEET-TEEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEES--------SSCEE
T ss_pred CceeEEEEcCCCCEEEEeC-CcHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeC--------CCCeE
Confidence 5699999998887666544 49999997665442211 12245576776666666544332 25788
Q ss_pred EEECCCCcEEEEEe---------------ecCCeEEEEecCCc-eEEEe-eccEEEEeecCCCceeEEEee--------C
Q psy3710 84 IWDDLKKQVVICLE---------------FNAPVKGVRLRRDK-IVVVL-EGLIKVYTFIQCPQQLHVFET--------N 138 (424)
Q Consensus 84 iwd~~~~~~~~~~~---------------~~~~v~~~~~~~~~-~~~~~-~~~i~v~~~~~~~~~~~~~~~--------~ 138 (424)
++|..+++...... ....|.++...+++ ..+++ ++.|..++.. .. ....+.. .
T Consensus 282 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~-~~-~~~~~~~~~~~~~~~~ 359 (781)
T 3v9f_A 282 ILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNA-PP-TFHTWSYSPTQMNESS 359 (781)
T ss_dssp EEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSS-CC-SCEEEC----CCCSSC
T ss_pred EECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCC-CC-cceeeccCccccccCC
Confidence 89987665432111 13468899888776 55666 7789999874 22 2222211 1
Q ss_pred CCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCccc----ccccCCeEEEEEccCCCEEEEEecCCcEEEEEE
Q psy3710 139 PNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDI----AAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 214 (424)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd 214 (424)
.....+.++...+++.+.+ |+.++-|..||..+. ....+ ......|.++...++|.+ ..|+.++. +..+|
T Consensus 360 l~~~~v~~i~~d~~g~lWi--gt~~~Gl~~~~~~~~--~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~G-l~~~~ 433 (781)
T 3v9f_A 360 LSNKVVSSVCDDGQGKLWI--GTDGGGINVFENGKR--VAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGN-ISYYN 433 (781)
T ss_dssp CSSSCEEEEEECTTSCEEE--EEBSSCEEEEETTEE--EEECC-----CCCSBEEEEEECTTSCE-EEEETTEE-EEEEC
T ss_pred CCCcceEEEEEcCCCCEEE--EeCCCcEEEEECCCC--eEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCC-EEEEc
Confidence 1123477888887777654 676777888987653 11111 123467899988877764 44666666 99999
Q ss_pred CCCcceeeEEe-----cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec----cCCCCeEEEEEcCCCCEEE
Q psy3710 215 TGSGQKLNELR-----RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA----AHEAPLSCIALNQTGTRLA 285 (424)
Q Consensus 215 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~ 285 (424)
..+++...-.. ..+..+...+++. +.+ |+. +-|..||..+.+....... .....|.++...++|++.+
T Consensus 434 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi 510 (781)
T 3v9f_A 434 TRLKKFQIIELEKNELLDVRVFYEDKNKK-IWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI 510 (781)
T ss_dssp SSSCEEEECCSTTTCCCCEEEEEECTTSE-EEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE
T ss_pred CCCCcEEEeccCCCCCCeEEEEEECCCCC-EEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE
Confidence 87765432211 1244455555544 333 555 6789999876542211110 1146799999999887555
Q ss_pred EEeCCCcEEEEEECCCCc
Q psy3710 286 TASYKGTLIRVFDTGSGQ 303 (424)
Q Consensus 286 ~~~~d~~~i~iwd~~~~~ 303 (424)
|+.++. +..+|..+++
T Consensus 511 -gt~~~G-l~~~~~~~~~ 526 (781)
T 3v9f_A 511 -GTFGGG-VGIYTPDMQL 526 (781)
T ss_dssp -EESSSC-EEEECTTCCE
T ss_pred -EEcCCC-EEEEeCCCCe
Confidence 444334 7888887654
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.7e-07 Score=86.30 Aligned_cols=263 Identities=13% Similarity=0.123 Sum_probs=160.0
Q ss_pred CceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCe----------EEEEecCCceEEEe-eccEEEEeecCCCce
Q psy3710 63 CNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPV----------KGVRLRRDKIVVVL-EGLIKVYTFIQCPQQ 131 (424)
Q Consensus 63 ~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v----------~~~~~~~~~~~~~~-~~~i~v~~~~~~~~~ 131 (424)
+..+++.+. ++.|.-+|.++|+.+.++...... ..+++..+..++.+ ++.+..+|.+ +++.
T Consensus 68 ~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~-TG~~ 139 (582)
T 1flg_A 68 DGVIYVTAS-------YSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKN-TGKV 139 (582)
T ss_dssp TTEEEEEET-------TTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESS-SCCE
T ss_pred CCEEEEEcC-------CCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECC-CCCE
Confidence 445555552 245999999999999988743221 23344444455555 8899999986 7877
Q ss_pred eEEEeeCCCC-----CeeEEEeec-CCCC-eEEEeec------cCCeEEEEeCCCCCCCCccccccc-------------
Q psy3710 132 LHVFETNPNP-----KGLCVLCPN-SNNS-LLAFPGR------KSGHVHLVDLADPERPPLDIAAHE------------- 185 (424)
Q Consensus 132 ~~~~~~~~~~-----~~~~~~~~~-~~~~-~l~~~~~------~dg~i~i~d~~~~~~~~~~~~~~~------------- 185 (424)
+......... .....+.-. .+++ .+++ +. .+|.|.-+|..++ +.+-......
T Consensus 140 ~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG-~~~W~~~~~~~~~~p~~~~~~~~ 217 (582)
T 1flg_A 140 VWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTG-EEIWMRPFVEGHMGRLNGKDSTV 217 (582)
T ss_dssp EEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTC-CEEEEEESSTTCEEEETTEEEEE
T ss_pred EeeecCCCCCcCcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCC-CEEeecCCCccccccccCccccc
Confidence 7766543310 001111111 1233 4544 54 3789999999886 3222211100
Q ss_pred ----------------------------CCeEEEEEccCCCEEEEEec--------------------C----CcEEEEE
Q psy3710 186 ----------------------------APLSCIALNQTGTRLATASY--------------------K----GTLIRVF 213 (424)
Q Consensus 186 ----------------------------~~v~~~~~~~~~~~l~~~~~--------------------d----~~~i~iw 213 (424)
..-..+++.|+...++.+.. | +. |..+
T Consensus 218 ~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~-v~Al 296 (582)
T 1flg_A 218 TGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSG-QVGV 296 (582)
T ss_dssp SSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSE-EEEE
T ss_pred ccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccce-EEEE
Confidence 00023566677677776653 2 57 9999
Q ss_pred ECCCcceeeEEecc---------e-eeeeec---CCCC--eEEEEeecCCeEEEEeCCCCCCCCeeeccC----------
Q psy3710 214 DTGSGQKLNELRRG---------L-CVLCPN---SNNS--LLAFPGRKSGHVHLVDLADPERPPLDIAAH---------- 268 (424)
Q Consensus 214 d~~~~~~~~~~~~~---------~-~~~~~~---~~~~--~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~---------- 268 (424)
|.++++.+-.++.. . ..+... .+++ .+++.++.+|.++++|..+++.....-...
T Consensus 297 D~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~ 376 (582)
T 1flg_A 297 DPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDL 376 (582)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECT
T ss_pred eCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccc
Confidence 99999998877532 0 111122 3454 466678999999999998876321110000
Q ss_pred --CCC--------------------------------eEEEEEcCCCCEEEEEe--------------------------
Q psy3710 269 --EAP--------------------------------LSCIALNQTGTRLATAS-------------------------- 288 (424)
Q Consensus 269 --~~~--------------------------------v~~~~~~~~~~~l~~~~-------------------------- 288 (424)
..+ -..++++|+...+++..
T Consensus 377 ~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 456 (582)
T 1flg_A 377 KTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFR 456 (582)
T ss_dssp TTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceecccee
Confidence 000 01356777655555432
Q ss_pred -------CCCcEEEEEECCCCceeeeec-----------cCCcEEEEEeCCCcEEEEEccccccccc
Q psy3710 289 -------YKGTLIRVFDTGSGQKLNELR-----------RDSSYLCVSSDHGTVHVFSVDEAQKINK 337 (424)
Q Consensus 289 -------~d~~~i~iwd~~~~~~~~~~~-----------~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 337 (424)
.+|. |..||+.+|+.+.++. ..+.+++.++.|+.++.||.++|+.+-+
T Consensus 457 ~~p~~~~~~G~-l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~ 522 (582)
T 1flg_A 457 IKRMYDDHVGS-LRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK 522 (582)
T ss_dssp EEESCSSCSEE-EEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ecCCCCCCcce-EEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEE
Confidence 2577 9999999999887653 2456788899999999999999987644
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.2e-07 Score=86.79 Aligned_cols=261 Identities=11% Similarity=0.050 Sum_probs=160.8
Q ss_pred CceEEEEeCCcCCCcC-CCeEEEEEC-CCCcEEEEEeecCC------------eEEEEec--CCc----eEEEe-eccEE
Q psy3710 63 CNYLALVGGGTHPKYP-NNRVMIWDD-LKKQVVICLEFNAP------------VKGVRLR--RDK----IVVVL-EGLIK 121 (424)
Q Consensus 63 ~~~l~~~~~~~~~~~~-d~~i~iwd~-~~~~~~~~~~~~~~------------v~~~~~~--~~~----~~~~~-~~~i~ 121 (424)
+..+++.+ . ++.|.-+|. .+|+.+.++..... ...+++. .+. .++.+ ++.+.
T Consensus 62 ~g~vyv~~-------~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~ 134 (599)
T 1w6s_A 62 DGKMYIHT-------SFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVA 134 (599)
T ss_dssp TTEEEEEC-------STTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEE
T ss_pred CCEEEEEe-------CCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEE
Confidence 45565555 3 588999999 99999998874321 1235553 333 44444 88999
Q ss_pred EEeecCCCceeEEEeeCCCC--CeeE-EEeecCCCCeEEEeec------cCCeEEEEeCCCCCCCCccccccc-------
Q psy3710 122 VYTFIQCPQQLHVFETNPNP--KGLC-VLCPNSNNSLLAFPGR------KSGHVHLVDLADPERPPLDIAAHE------- 185 (424)
Q Consensus 122 v~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~l~~~~~------~dg~i~i~d~~~~~~~~~~~~~~~------- 185 (424)
.+|.+ +++.+......... ..+. ..... ++ .+++ ++ .+|.|+-+|..++ +.+-.+....
T Consensus 135 AlDa~-TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~v-g~~g~e~g~~g~v~A~D~~TG-~~~W~~~~~~~~~~~~~ 209 (599)
T 1w6s_A 135 ALNAE-TGETVWKVENSDIKVGSTLTIAPYVV-KD-KVII-GSSGAELGVRGYLTAYDVKTG-EQVWRAYATGPDKDLLL 209 (599)
T ss_dssp EEETT-TCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEE-CCBCGGGTCCCEEEEEETTTC-CEEEEEESSSCHHHHTB
T ss_pred EEECC-CCCEEEeecCCCCCccceeecCCEEE-CC-EEEE-EecccccCCCCeEEEEECCCC-cEEEEEcCCCCcccccc
Confidence 99986 77777766543210 0010 00111 34 4444 44 3789999999987 3322221110
Q ss_pred ------------------------------CCe-EEEEEccCCCEEEEEecC----------------CcEEEEEECCCc
Q psy3710 186 ------------------------------APL-SCIALNQTGTRLATASYK----------------GTLIRVFDTGSG 218 (424)
Q Consensus 186 ------------------------------~~v-~~~~~~~~~~~l~~~~~d----------------~~~i~iwd~~~~ 218 (424)
..+ ..+++.++...++.+..+ +. |..+|.+++
T Consensus 210 ~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~s-v~Ald~~TG 288 (599)
T 1w6s_A 210 ASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT-IFGRDADTG 288 (599)
T ss_dssp CTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE-EEEEETTTC
T ss_pred ccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccce-EEEEeCCCC
Confidence 001 134566777777777655 36 999999999
Q ss_pred ceeeEEecce----------eeeeec---CCCC--eEEEEeecCCeEEEEeCCCCCCCCeeecc------------CCCC
Q psy3710 219 QKLNELRRGL----------CVLCPN---SNNS--LLAFPGRKSGHVHLVDLADPERPPLDIAA------------HEAP 271 (424)
Q Consensus 219 ~~~~~~~~~~----------~~~~~~---~~~~--~~~~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~~ 271 (424)
+.+-.++... ..+.+. .+++ .+++.++.+|.++++|.++++.....-.. ...+
T Consensus 289 ~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p 368 (599)
T 1w6s_A 289 EAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQP 368 (599)
T ss_dssp CEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCE
T ss_pred ceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCce
Confidence 9987776431 111121 3453 56666889999999999987632211000 0011
Q ss_pred e--------------------------EEEEEcCCCCEEEEEe-------------------------------------
Q psy3710 272 L--------------------------SCIALNQTGTRLATAS------------------------------------- 288 (424)
Q Consensus 272 v--------------------------~~~~~~~~~~~l~~~~------------------------------------- 288 (424)
+ ..++++|+..++++..
T Consensus 369 ~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~ 448 (599)
T 1w6s_A 369 VRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQN 448 (599)
T ss_dssp EECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTT
T ss_pred eeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCccc
Confidence 1 2456777666554421
Q ss_pred --CCCcEEEEEECCCCceeeeec-----------cCCcEEEEEeCCCcEEEEEccccccccc
Q psy3710 289 --YKGTLIRVFDTGSGQKLNELR-----------RDSSYLCVSSDHGTVHVFSVDEAQKINK 337 (424)
Q Consensus 289 --~d~~~i~iwd~~~~~~~~~~~-----------~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 337 (424)
..|. |..||+.+|+.+.+.. ..+.+++.++.|+.++.||.++|+.+-+
T Consensus 449 ~~~~G~-l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~ 509 (599)
T 1w6s_A 449 YEGLGQ-IKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWK 509 (599)
T ss_dssp TBCCEE-EEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCCcCe-EEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEE
Confidence 3467 9999999999888753 1466778899999999999999987643
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=8.1e-08 Score=89.68 Aligned_cols=262 Identities=12% Similarity=0.056 Sum_probs=160.6
Q ss_pred CceEEEEeCCcCCCcCCCeEEEEEC-CCCcEEEEEeecCC------------eEEEEecCCceEEEe-eccEEEEeecCC
Q psy3710 63 CNYLALVGGGTHPKYPNNRVMIWDD-LKKQVVICLEFNAP------------VKGVRLRRDKIVVVL-EGLIKVYTFIQC 128 (424)
Q Consensus 63 ~~~l~~~~~~~~~~~~d~~i~iwd~-~~~~~~~~~~~~~~------------v~~~~~~~~~~~~~~-~~~i~v~~~~~~ 128 (424)
+..+++.+. .++.|.-+|. ++|+.+.++..... -..+.+..+..++.+ ++.+..+|.+ +
T Consensus 62 ~g~vyv~~~------~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~-t 134 (571)
T 2ad6_A 62 GDMMYVHSA------FPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAK-T 134 (571)
T ss_dssp TTEEEEECS------TTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETT-T
T ss_pred CCEEEEEeC------CCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECC-C
Confidence 455555552 1588999999 99999988874321 112344444444554 7899999986 7
Q ss_pred CceeEEEeeCCCC--CeeE-EEeecCCCCeEEEeecc------CCeEEEEeCCCCCCCCccccccc--------------
Q psy3710 129 PQQLHVFETNPNP--KGLC-VLCPNSNNSLLAFPGRK------SGHVHLVDLADPERPPLDIAAHE-------------- 185 (424)
Q Consensus 129 ~~~~~~~~~~~~~--~~~~-~~~~~~~~~~l~~~~~~------dg~i~i~d~~~~~~~~~~~~~~~-------------- 185 (424)
++.+......... ..+. ..... ++ .+++ +.. ++.|..+|..++ +.+-.+....
T Consensus 135 G~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~v-g~~~~~~~~~g~v~a~D~~tG-~~~W~~~~~~~~~~~~~~p~~~~~ 210 (571)
T 2ad6_A 135 GKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLM-GCSGAELGVRGAVNAFDLKTG-ELKWRAFATGSDDSVRLAKDFNSA 210 (571)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEE-ECBCGGGTCCCEEEEEETTTC-CEEEEEESSSCHHHHTBCTTTTTT
T ss_pred CCEEEEecCCCCCccceeccCCEEE-CC-EEEE-EecCCccCCCCEEEEEECCCC-cEEEEEccCCCccccccCcccccc
Confidence 7777766543210 0110 00011 34 4444 443 789999999987 3332221100
Q ss_pred -----------------------C-CeEEEEEccCCCEEEEEecC----------------CcEEEEEECCCcceeeEEe
Q psy3710 186 -----------------------A-PLSCIALNQTGTRLATASYK----------------GTLIRVFDTGSGQKLNELR 225 (424)
Q Consensus 186 -----------------------~-~v~~~~~~~~~~~l~~~~~d----------------~~~i~iwd~~~~~~~~~~~ 225 (424)
. ....+++.++...++.+..+ +. |..+|.++++.+-.++
T Consensus 211 ~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~-v~Ald~~tG~~~W~~~ 289 (571)
T 2ad6_A 211 NPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT-IWGRDLDTGMAKWGYQ 289 (571)
T ss_dssp CGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE-EEEEETTTCCEEEEEE
T ss_pred cccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE-EEEEecCCCcEEEEec
Confidence 0 00235566766666666532 36 8999999999887776
Q ss_pred cc---------eee-e--eecCCCC--eEEEEeecCCeEEEEeCCCCCCCCeeeccC------------CCCe-------
Q psy3710 226 RG---------LCV-L--CPNSNNS--LLAFPGRKSGHVHLVDLADPERPPLDIAAH------------EAPL------- 272 (424)
Q Consensus 226 ~~---------~~~-~--~~~~~~~--~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~------------~~~v------- 272 (424)
.. ... + ....+++ .+++.++.+|.++++|..+++.....-... ..++
T Consensus 290 ~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~ 369 (571)
T 2ad6_A 290 KTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFAT 369 (571)
T ss_dssp SSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCC
T ss_pred CCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCC
Confidence 32 111 1 1112454 456668889999999998876322111010 0111
Q ss_pred -------------------EEEEEcCCCCEEEEEe-------------------------------------CCCcEEEE
Q psy3710 273 -------------------SCIALNQTGTRLATAS-------------------------------------YKGTLIRV 296 (424)
Q Consensus 273 -------------------~~~~~~~~~~~l~~~~-------------------------------------~d~~~i~i 296 (424)
..++++|+..+++... .++. |..
T Consensus 370 ~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~-l~a 448 (571)
T 2ad6_A 370 RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQ-IRA 448 (571)
T ss_dssp CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEE-EEE
T ss_pred CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCe-EEE
Confidence 2467888877776654 2467 999
Q ss_pred EECCCCceeeeecc-----------CCcEEEEEeCCCcEEEEEccccccccc
Q psy3710 297 FDTGSGQKLNELRR-----------DSSYLCVSSDHGTVHVFSVDEAQKINK 337 (424)
Q Consensus 297 wd~~~~~~~~~~~~-----------~~~~l~~~~~d~~i~iw~~~~~~~~~~ 337 (424)
||+.+++.+.++.. .+..++.++.|+.|+.||.++|+.+-+
T Consensus 449 ~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~ 500 (571)
T 2ad6_A 449 FDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN 500 (571)
T ss_dssp ECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEE
Confidence 99999998887641 356777789999999999999887644
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-08 Score=96.60 Aligned_cols=272 Identities=15% Similarity=0.155 Sum_probs=165.5
Q ss_pred CeeEeecCCe-EEEEeCCcCcccccccccCCC---------eeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcE
Q psy3710 23 GCFACGMEDG-FRIYNCDPLKEKERQDFTDGG---------LGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQV 92 (424)
Q Consensus 23 ~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~---------i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~ 92 (424)
..+.+++.++ |.-+|..+++.+......... ...-.....+..+++.+ .|+.|..+|.++|+.
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-------~dg~l~alD~~tG~~ 139 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGT-------LDGRLIALDAKTGKA 139 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEEC-------TTSEEEEEETTTCCE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEc-------CCCEEEEEECCCCCE
Confidence 3455554455 888998888876554332110 00001112345555554 479999999999999
Q ss_pred EEEEeecC-----CeE-EEEecCCceEEEe--------eccEEEEeecCCCceeEEEeeCC-CCC---------------
Q psy3710 93 VICLEFNA-----PVK-GVRLRRDKIVVVL--------EGLIKVYTFIQCPQQLHVFETNP-NPK--------------- 142 (424)
Q Consensus 93 ~~~~~~~~-----~v~-~~~~~~~~~~~~~--------~~~i~v~~~~~~~~~~~~~~~~~-~~~--------------- 142 (424)
+.++.... .+. ...+. ++.+++. ++.|..+|.+ +++.+..+.... .+.
T Consensus 140 ~W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~-tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 217 (668)
T 1kv9_A 140 IWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDAD-TGKLAWRFYTVPGDPALPYEHPELREAAKTW 217 (668)
T ss_dssp EEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETT-TCCEEEEEESSCCCTTSCCSSHHHHHHHTTC
T ss_pred eeeeccCCCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECC-CCcEEEEecccCCCCCccccccccccccccC
Confidence 98887421 111 11122 3444432 3789999986 788877765421 110
Q ss_pred -------------eeEEEeecCCCCeEEEeeccCC-------------------eEEEEeCCCCCCCCccccc--cc---
Q psy3710 143 -------------GLCVLCPNSNNSLLAFPGRKSG-------------------HVHLVDLADPERPPLDIAA--HE--- 185 (424)
Q Consensus 143 -------------~~~~~~~~~~~~~l~~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~--~~--- 185 (424)
....++++++...+++ +..++ .|..+|.+++ +.+-.++. |.
T Consensus 218 ~g~~~w~~~~gg~~w~~~a~d~~~~~vy~-~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG-~~~W~~~~~~~~~wd 295 (668)
T 1kv9_A 218 QGDQYWKLGGGGTVWDSMAYDPELDLLYV-GTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG-KLAWHYQVTPGDSWD 295 (668)
T ss_dssp CSSCHHHHCEECCCCSCEEEETTTTEEEE-ECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC-CEEEEEESSTTCCSC
T ss_pred CccceeeeCCCCccccceEEcCCCCEEEE-eCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC-ceeeEeecCCCcccc
Confidence 0013466777777776 66665 4899999987 44443332 22
Q ss_pred ----CCeEEEEEccCCC---EEEEEecCCcEEEEEECCCcceeeEEecce------------------------------
Q psy3710 186 ----APLSCIALNQTGT---RLATASYKGTLIRVFDTGSGQKLNELRRGL------------------------------ 228 (424)
Q Consensus 186 ----~~v~~~~~~~~~~---~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~------------------------------ 228 (424)
.+.....+..+|+ .++.++.+|. ++++|.++++.+...+...
T Consensus 296 ~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~ 374 (668)
T 1kv9_A 296 FTATQQITLAELNIDGKPRKVLMQAPKNGF-FYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMW 374 (668)
T ss_dssp CCCCSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEES
T ss_pred ccCCCCcEEEEeccCCcEEEEEEEECCCCE-EEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEEC
Confidence 2333333334665 6888999999 9999999999874432110
Q ss_pred ---------eeeeecCCCCeEEEEe-----------------------------------ecCCeEEEEeCCCCCCCCee
Q psy3710 229 ---------CVLCPNSNNSLLAFPG-----------------------------------RKSGHVHLVDLADPERPPLD 264 (424)
Q Consensus 229 ---------~~~~~~~~~~~~~~~~-----------------------------------~~dg~i~i~d~~~~~~~~~~ 264 (424)
..++++|+...+++.. ..+|.|..||+.+++..-+.
T Consensus 375 p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~ 454 (668)
T 1kv9_A 375 PSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKV 454 (668)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEE
T ss_pred CCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEc
Confidence 1145566655555421 12488999999987743222
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec
Q psy3710 265 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR 309 (424)
Q Consensus 265 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 309 (424)
. +..+.....+...+.+++.++.|+. ++.||.++|+.+..+.
T Consensus 455 -~-~~~~~~~~~~~t~gg~vf~g~~dg~-l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 455 -P-YPTHWNGGTLSTAGNLVFQGTAAGQ-MHAYSADKGEALWQFE 496 (668)
T ss_dssp -E-ESSSCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEEE
T ss_pred -c-CCCCCcCceeEeCCCEEEEECCccc-chhhhhhcChhheEec
Confidence 1 2223333344456788999999999 9999999999998875
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.8e-06 Score=83.07 Aligned_cols=342 Identities=12% Similarity=0.096 Sum_probs=194.8
Q ss_pred CceEEEEECCCCCeeEeecCCeEEEEeCCcCcccccc-------cccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEE
Q psy3710 11 NGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQ-------DFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVM 83 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~ 83 (424)
..|.++...++|.+.+....+|+..|+..+.+..... ......|.++....++...+... +-+.
T Consensus 163 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~---------~Gl~ 233 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS---------KGLA 233 (781)
T ss_dssp CCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET---------TEEE
T ss_pred cceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC---------CcHh
Confidence 4688888888887666544558999997765432111 11234576666666666554332 4789
Q ss_pred EEECCCCcEEEEEe--------ecCCeEEEEecCCceE-EEee-ccEEEEeecCCCceeEEEe-------eC-----CCC
Q psy3710 84 IWDDLKKQVVICLE--------FNAPVKGVRLRRDKIV-VVLE-GLIKVYTFIQCPQQLHVFE-------TN-----PNP 141 (424)
Q Consensus 84 iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~-~~~~-~~i~v~~~~~~~~~~~~~~-------~~-----~~~ 141 (424)
+||..+++...... ....|.++...+++.+ +++. +.|.+++.. ......... .. ...
T Consensus 234 ~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~l~~ 312 (781)
T 3v9f_A 234 LFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQ-QNQFLLPEQIRFEFIREGDNNYSLSN 312 (781)
T ss_dssp EEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETT-CC---------CEEECBCSSTTSBSS
T ss_pred eECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCC-CCeeeeeeccccccccCCCCCCCCCC
Confidence 99987665432111 1356899998888754 4454 788899875 332211111 00 112
Q ss_pred CeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccc----------cccCCeEEEEEccCCCEEEEEecCCcEEE
Q psy3710 142 KGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA----------AHEAPLSCIALNQTGTRLATASYKGTLIR 211 (424)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~d~~~i~ 211 (424)
..+.++...++|.+.+ |..++-|..++.... ....+. .....|.++...++|. |..|+.++. |.
T Consensus 313 ~~v~~i~~D~~g~lWi--gt~~~Gl~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~G-l~ 386 (781)
T 3v9f_A 313 ASARYIFQDSFNNIWI--GTWGGGINFISNAPP--TFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGG-IN 386 (781)
T ss_dssp SCEEEEEECSSCCEEE--EEBSSCEEEECSSCC--SCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSC-EE
T ss_pred CeEEEEEEeCCCCEEE--EecCCeEEEeCCCCC--cceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCc-EE
Confidence 3477888888887555 777788899987753 222221 1235689999888775 556666666 99
Q ss_pred EEECCCcceeeEE-----e-cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeee-ccCCCCeEEEEEcCCCCEE
Q psy3710 212 VFDTGSGQKLNEL-----R-RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDI-AAHEAPLSCIALNQTGTRL 284 (424)
Q Consensus 212 iwd~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l 284 (424)
.+|..+++...-. . ..+..++..+++. +.+ |+.++-+..+|..+++...... ......|.++...++|.+.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw 464 (781)
T 3v9f_A 387 VFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW 464 (781)
T ss_dssp EEETTEEEEECC-----CCCSBEEEEEECTTSC-EEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE
T ss_pred EEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE
Confidence 9998765432211 1 1244455555554 333 7777789999887653111100 1234679999998887654
Q ss_pred EEEeCCCcEEEEEECCCCceeeee-----------------ccCCcEEEEEeCCCcEEEEEccccccccccccceeeecc
Q psy3710 285 ATASYKGTLIRVFDTGSGQKLNEL-----------------RRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFL 347 (424)
Q Consensus 285 ~~~~~d~~~i~iwd~~~~~~~~~~-----------------~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 347 (424)
+ |+. +. +..+|..+++..... .++|. |..|+.++-|..|+..+++.. ....
T Consensus 465 i-gt~-~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~------- 532 (781)
T 3v9f_A 465 I-GTH-AG-VFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVR-KFNQ------- 532 (781)
T ss_dssp E-EET-TE-EEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEE-EECT-------
T ss_pred E-EEC-Cc-eEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEE-EccC-------
Confidence 4 445 45 899998775432211 12333 333444344666776553221 1100
Q ss_pred CccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q psy3710 348 PKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFN 394 (424)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~ 394 (424)
+. ..+...+..+...++|+. ..++.+|.+..|+..
T Consensus 533 ~~-----------~l~~~~i~~i~~d~~g~l-Wi~T~~Glv~~~d~~ 567 (781)
T 3v9f_A 533 YE-----------GFCSNTINQIYRSSKGQM-WLATGEGLVCFPSAR 567 (781)
T ss_dssp TT-----------TCSCSCEEEEEECTTSCE-EEEETTEEEEESCTT
T ss_pred CC-----------CCCCCeeEEEEECCCCCE-EEEECCCceEEECCC
Confidence 00 012345667777777764 445556665777654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=7.4e-08 Score=79.46 Aligned_cols=191 Identities=12% Similarity=0.003 Sum_probs=138.6
Q ss_pred eeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecC--CeEEEEecCCceEEEe--eccEEEEeecCCC
Q psy3710 54 LGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNA--PVKGVRLRRDKIVVVL--EGLIKVYTFIQCP 129 (424)
Q Consensus 54 i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~ 129 (424)
...+.+++++ .|..+++.. .++.|.+.|+.+++.+..+.... ....+++..+..+++. ++.+.++|.. +.
T Consensus 23 ~~Gl~~~~dg-~Lyvstg~~----~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~-t~ 96 (266)
T 2iwa_A 23 TQGLVYAEND-TLFESTGLY----GRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRR-TL 96 (266)
T ss_dssp EEEEEECSTT-EEEEEECST----TTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETT-TT
T ss_pred cccEEEeCCC-eEEEECCCC----CCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECC-CC
Confidence 4678888875 454444321 25899999999999999887433 3346777766666666 8999999986 77
Q ss_pred ceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccc-----cCCeEEEEEccCCCEEEEEe
Q psy3710 130 QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAH-----EAPLSCIALNQTGTRLATAS 204 (424)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~ 204 (424)
+.+..+... .+.+ .. .++|++.+++ +..++.|.++|..+. +....+.-- -...+.+.|. +|...+...
T Consensus 97 ~v~~~i~~g-~~~g-~g--lt~Dg~~l~v-s~gs~~l~viD~~t~-~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~ 169 (266)
T 2iwa_A 97 SNIKNFTHQ-MKDG-WG--LATDGKILYG-SDGTSILYEIDPHTF-KLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIW 169 (266)
T ss_dssp EEEEEEECC-SSSC-CE--EEECSSSEEE-ECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred cEEEEEECC-CCCe-EE--EEECCCEEEE-ECCCCeEEEEECCCC-cEEEEEEECCCCcccccceeEEEE-CCEEEEecC
Confidence 888887654 1222 22 3457887877 556899999999886 444443321 1236688888 675555554
Q ss_pred cCCcEEEEEECCCcceeeEEecc----------------eeeeeecCCCCeEEEEeecCCeEEEEeCCCC
Q psy3710 205 YKGTLIRVFDTGSGQKLNELRRG----------------LCVLCPNSNNSLLAFPGRKSGHVHLVDLADP 258 (424)
Q Consensus 205 ~d~~~i~iwd~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 258 (424)
.++. |.+.|..+++.+..++.+ ...++++|+++.+++++...+.+...++...
T Consensus 170 ~~~~-V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 170 QTDC-IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TSSE-EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CCCe-EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 5677 999999999999888742 2678999999999999999999999998764
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.8e-08 Score=94.08 Aligned_cols=272 Identities=11% Similarity=0.083 Sum_probs=159.4
Q ss_pred eeEeecC-Ce-EEEEeC-CcCcccccccccCC-Ce--------eeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCc
Q psy3710 24 CFACGME-DG-FRIYNC-DPLKEKERQDFTDG-GL--------GHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ 91 (424)
Q Consensus 24 ~la~g~~-~~-i~iw~~-~~~~~~~~~~~~~~-~i--------~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~ 91 (424)
.+.+++. ++ |.-+|. ++++.+........ .+ ..-.....+..+++.+ .|+.+..+|.++|+
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-------~dg~l~alD~~tG~ 136 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQ-------ANGHLLALDAKTGK 136 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC-------TTSEEEEEETTTCC
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEe-------CCCEEEEEECCCCC
Confidence 4444444 44 888998 88887554433211 00 0001112355555554 47999999999999
Q ss_pred EEEEEeecC-----CeE-EEEecCCceEEEe-------eccEEEEeecCCCceeEEEeeCCCCC----------------
Q psy3710 92 VVICLEFNA-----PVK-GVRLRRDKIVVVL-------EGLIKVYTFIQCPQQLHVFETNPNPK---------------- 142 (424)
Q Consensus 92 ~~~~~~~~~-----~v~-~~~~~~~~~~~~~-------~~~i~v~~~~~~~~~~~~~~~~~~~~---------------- 142 (424)
.+.+..... .+. ...+..+..++.. ++.|..+|.+ +++.+..+.......
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~-tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G 215 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLK-TGELKWRAFATGSDDSVRLAKDFNSANPHYG 215 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETT-TCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECC-CCcEEEEEccCCCccccccCccccccccccc
Confidence 998876432 222 1122233333333 3689999986 777777665432110
Q ss_pred -----------------e---eEEEeecCCCCeEEEeeccC----------------CeEEEEeCCCCCCCCccccc--c
Q psy3710 143 -----------------G---LCVLCPNSNNSLLAFPGRKS----------------GHVHLVDLADPERPPLDIAA--H 184 (424)
Q Consensus 143 -----------------~---~~~~~~~~~~~~l~~~~~~d----------------g~i~i~d~~~~~~~~~~~~~--~ 184 (424)
. ...+++.++...+++ +..+ +.|..+|.+++ +.+-.++. |
T Consensus 216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~-~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG-~~~W~~~~~~~ 293 (571)
T 2ad6_A 216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYY-GSGNPAPWNETMRPGDNKWTMTIWGRDLDTG-MAKWGYQKTPH 293 (571)
T ss_dssp CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEE-ECCCCSCSCGGGSCSCCTTTTEEEEEETTTC-CEEEEEESSTT
T ss_pred ccccccccCcccceecCCCCeeeeEEEcCCCCeEEE-ECCCCccccCCccCCCceeEEEEEEEecCCC-cEEEEecCCCC
Confidence 0 011334455555655 4321 36889999886 44333321 2
Q ss_pred --------cCCeEEEEEccCCC---EEEEEecCCcEEEEEECCCcceeeEEecce-------------------------
Q psy3710 185 --------EAPLSCIALNQTGT---RLATASYKGTLIRVFDTGSGQKLNELRRGL------------------------- 228 (424)
Q Consensus 185 --------~~~v~~~~~~~~~~---~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~------------------------- 228 (424)
..++. +...++|+ .++.++.+|. ++++|..+++.+..++...
T Consensus 294 d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~ 371 (571)
T 2ad6_A 294 DEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGI-LYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRM 371 (571)
T ss_dssp CSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSE-EEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCT
T ss_pred cccccccCCCCEE-EecccCCcEEEEEEEeCCCcE-EEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCC
Confidence 12221 22234674 5777888998 9999999998876654211
Q ss_pred -----------------eeeeecCCCCeEEEEee------------------------------------cCCeEEEEeC
Q psy3710 229 -----------------CVLCPNSNNSLLAFPGR------------------------------------KSGHVHLVDL 255 (424)
Q Consensus 229 -----------------~~~~~~~~~~~~~~~~~------------------------------------~dg~i~i~d~ 255 (424)
..++++|+...+++... .+|.|..||+
T Consensus 372 ~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~ 451 (571)
T 2ad6_A 372 DHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDL 451 (571)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECT
T ss_pred CCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEEC
Confidence 12356666666655321 3578999999
Q ss_pred CCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeecc
Q psy3710 256 ADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR 310 (424)
Q Consensus 256 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~ 310 (424)
.+++..-. .. +...+....+...+..++.++.|+. |+.+|.++|+.+.++..
T Consensus 452 ~tG~~~W~-~~-~~~~~~~~~~~t~gg~v~~g~~dg~-l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 452 TTGKAKWT-KW-EKFAAWGGTLYTKGGLVWYATLDGY-LKALDNKDGKELWNFKM 503 (571)
T ss_dssp TTCCEEEE-EE-ESSCCCSBCEEETTTEEEEECTTSE-EEEEETTTCCEEEEEEC
T ss_pred CCCCEEEE-ec-CCCCccceeEEECCCEEEEEcCCCe-EEEEECCCCCEEEEEeC
Confidence 98774322 21 1222222233334567888999999 99999999999998763
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.8e-08 Score=91.80 Aligned_cols=249 Identities=13% Similarity=0.091 Sum_probs=169.2
Q ss_pred CCeeeEEEec-----cCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEe--ecCCeEEEEe-c-CCceEEEe------
Q psy3710 52 GGLGHVEMLF-----RCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLE--FNAPVKGVRL-R-RDKIVVVL------ 116 (424)
Q Consensus 52 ~~i~~~~~~~-----~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~-~-~~~~~~~~------ 116 (424)
+......+++ |++++.+.... +.+|.+.|+.+.++.+.+. ....+..+++ + |++.++..
T Consensus 85 gd~hh~~~s~t~g~~DG~~lfVnd~~------~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~ 158 (595)
T 1fwx_A 85 GDLHHVHMSFTEGKYDGRFLFMNDKA------NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDET 158 (595)
T ss_dssp CCBCCEEEEEETTEEEEEEEEEEETT------TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCE
T ss_pred CCCCccccCCCCCCcCCCEEEEEcCC------CCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEeccccc
Confidence 4444566766 88888887653 6899999999999888665 3466888887 4 77765544
Q ss_pred ---------------eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCC--------------eEE
Q psy3710 117 ---------------EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSG--------------HVH 167 (424)
Q Consensus 117 ---------------~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg--------------~i~ 167 (424)
++.+.++|.+ +.+....+.....+.. +..+|+|++++++..... .|.
T Consensus 159 p~~~dg~~l~~~~~~~~~vtvID~~-t~~v~~qI~Vgg~pd~---~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~ 234 (595)
T 1fwx_A 159 PLVNDGTNMEDVANYVNVFTAVDAD-KWEVAWQVLVSGNLDN---CDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIV 234 (595)
T ss_dssp ESSCSSSSTTCGGGEEEEEEEEETT-TTEEEEEEEESSCCCC---EEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEE
T ss_pred ccCCCCcccccccccCceEEEEECC-CCeEEEEEEeCCCccc---eEECCCCCEEEEEecCcccCcchhhccccccceEE
Confidence 2478999986 7777777776444443 467899999998443332 233
Q ss_pred EEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCC--cce-eeEEec--ceeeeeecCCCCeEEE
Q psy3710 168 LVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS--GQK-LNELRR--GLCVLCPNSNNSLLAF 242 (424)
Q Consensus 168 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~--~~~-~~~~~~--~~~~~~~~~~~~~~~~ 242 (424)
+.|..... .+.++|+.... +. |.+.|.++ ++. +..++. ....+.++|+|+++++
T Consensus 235 V~~~~~~~----------------~~v~~Gk~~~i----~~-V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V 293 (595)
T 1fwx_A 235 VFNIAEIE----------------KAIAAGDYQEL----NG-VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCV 293 (595)
T ss_dssp EEEHHHHH----------------HHHHHTCSEEE----TT-EEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEE
T ss_pred Eeecccee----------------EeccCCCeeEE----Cc-EEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEE
Confidence 33322110 12344554433 55 99999998 555 455553 3677899999999999
Q ss_pred EeecCCeEEEEeCCCCCC-----------CCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCC----------
Q psy3710 243 PGRKSGHVHLVDLADPER-----------PPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGS---------- 301 (424)
Q Consensus 243 ~~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~---------- 301 (424)
++..+.+|.++|+.+.+. ..... .-......++|+|+|....+.-.|+. |.+||+.+
T Consensus 294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsq-V~kwdi~~a~~~~~g~~~ 371 (595)
T 1fwx_A 294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQ-VVKWNIEDAIRAYAGEKV 371 (595)
T ss_dssp ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTSEEEEEETTTTE-EEEEEHHHHHHHHHTCSC
T ss_pred eCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCCeEEEEEecCCc-EEEEEhhHhhhhhccccc
Confidence 999999999999986420 11111 23456789999999944445556777 99999976
Q ss_pred Cceeee-----------------eccCCcEEEEEeC---CCc----------EEEEEccccc
Q psy3710 302 GQKLNE-----------------LRRDSSYLCVSSD---HGT----------VHVFSVDEAQ 333 (424)
Q Consensus 302 ~~~~~~-----------------~~~~~~~l~~~~~---d~~----------i~iw~~~~~~ 333 (424)
.+.+.. ++|||++|+++.. |+. -.++|+.+++
T Consensus 372 ~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 372 DPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred ceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 333332 3589999998764 432 1789996543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2.8e-08 Score=90.46 Aligned_cols=235 Identities=13% Similarity=0.071 Sum_probs=155.9
Q ss_pred CCCCeeEeecCCe--EEEEeCCcCcccccccccC-CCeeeEEE-e-ccCceEEEEeCCcC-----------CCcCCCeEE
Q psy3710 20 QDQGCFACGMEDG--FRIYNCDPLKEKERQDFTD-GGLGHVEM-L-FRCNYLALVGGGTH-----------PKYPNNRVM 83 (424)
Q Consensus 20 ~~g~~la~g~~~~--i~iw~~~~~~~~~~~~~~~-~~i~~~~~-~-~~~~~l~~~~~~~~-----------~~~~d~~i~ 83 (424)
+||++|.+...+. |.+.|+++.+.....+.+. .....+.+ . |+++++++.+.... +...++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 3888888765544 9999999988755334432 34666776 4 89999877752211 111357999
Q ss_pred EEECCCCcEEEEEeecCCeEEEEecCCceEEEe----e--------------c-----------------------cEEE
Q psy3710 84 IWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL----E--------------G-----------------------LIKV 122 (424)
Q Consensus 84 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~--------------~-----------------------~i~v 122 (424)
+.|.++.+.+.++.-.+....++++|++.+++. + . .|.|
T Consensus 179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 999999999999986557788889998866654 1 1 3555
Q ss_pred EeecCC-Cce-eEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCC-----------CCcccccccCCeE
Q psy3710 123 YTFIQC-PQQ-LHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER-----------PPLDIAAHEAPLS 189 (424)
Q Consensus 123 ~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~v~ 189 (424)
.|.+.. +.. +..+.....+ .++.++|||+++++++..+..|.++|+.+... ....+. -.....
T Consensus 259 ID~~~~~~~~~~~~Ipvg~~P---hGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~ 334 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPIANNP---HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPL 334 (595)
T ss_dssp EECSGGGCCSSEEEEEEESSC---CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEE
T ss_pred EeCcccCCceeEEEEecCCCc---eEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcc
Confidence 665420 222 3444433333 34688999999999788899999999985310 111121 124568
Q ss_pred EEEEccCCCEEEEEecCCcEEEEEECCC----------cceeeEEeccee--------eeeecCCCCeEEEEeecC-CeE
Q psy3710 190 CIALNQTGTRLATASYKGTLIRVFDTGS----------GQKLNELRRGLC--------VLCPNSNNSLLAFPGRKS-GHV 250 (424)
Q Consensus 190 ~~~~~~~~~~l~~~~~d~~~i~iwd~~~----------~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~d-g~i 250 (424)
.++|+|+|...++.-.|+. |.+||+.+ .+.+..+..+.. ....+|+|++++++.... ..+
T Consensus 335 h~aF~~dG~aY~t~~ldsq-V~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~ 413 (595)
T 1fwx_A 335 HTAFDGRGNAYTSLFLDSQ-VVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRF 413 (595)
T ss_dssp EEEECTTSEEEEEETTTTE-EEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred eEEECCCCeEEEEEecCCc-EEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccc
Confidence 9999999944455667787 99999977 456666665422 235689999998865433 333
Q ss_pred -----------EEEeCCCCC
Q psy3710 251 -----------HLVDLADPE 259 (424)
Q Consensus 251 -----------~i~d~~~~~ 259 (424)
.++|+..++
T Consensus 414 ~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 414 LNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CCCCSSCCEEEEEEECSSSS
T ss_pred ccCCCCCCCcceEEEcCCCc
Confidence 888885433
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=9.9e-07 Score=74.06 Aligned_cols=218 Identities=8% Similarity=0.032 Sum_probs=131.6
Q ss_pred CeEEEEECCCCcE-----EEEEe-ecCCeEEEEecCCc-eEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEee
Q psy3710 80 NRVMIWDDLKKQV-----VICLE-FNAPVKGVRLRRDK-IVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCP 149 (424)
Q Consensus 80 ~~i~iwd~~~~~~-----~~~~~-~~~~v~~~~~~~~~-~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (424)
+.|+.+++..... ...+. ....+..+++++++ .+..+ .+.|..++.. .......+.. .......+++
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~-g~~~~~~~~~--~~~~p~~ia~ 86 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLH-GGEPTTIIRQ--DLGSPEGIAL 86 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESS-SCCCEEEECT--TCCCEEEEEE
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecC-CCCcEEEEEC--CCCCccEEEE
Confidence 5788888765432 11122 23457899999854 44444 5789999985 3332222221 1134567888
Q ss_pred cCCCCeEEEeeccCCeEEEEeCCCCCCCCcccc-cccCCeEEEEEccCCCEEEEEec---CCcEEEEEECCCcceeeEEe
Q psy3710 150 NSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA-AHEAPLSCIALNQTGTRLATASY---KGTLIRVFDTGSGQKLNELR 225 (424)
Q Consensus 150 ~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---d~~~i~iwd~~~~~~~~~~~ 225 (424)
++++..|.++....+.|.+++++.. ....+. ........++++|++..|+.+.. .+. |..+++.... ...+.
T Consensus 87 d~~~~~lyv~d~~~~~I~~~~~~g~--~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~-I~~~~~dg~~-~~~~~ 162 (267)
T 1npe_A 87 DHLGRTIFWTDSQLDRIEVAKMDGT--QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPK-IETSHMDGTN-RRILA 162 (267)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSC--SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCE-EEEEETTSCC-CEEEE
T ss_pred EecCCeEEEEECCCCEEEEEEcCCC--CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcE-EEEEecCCCC-cEEEE
Confidence 8877777764667889999998753 222222 22245789999997666655554 356 8888875432 22222
Q ss_pred ----cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEECC
Q psy3710 226 ----RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY-KGTLIRVFDTG 300 (424)
Q Consensus 226 ----~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~~i~iwd~~ 300 (424)
.....++++++++.++++....+.|..+|+..... ..... .......++.. +..|+.+.. .+. |..+|..
T Consensus 163 ~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~-v~~~d~~ 237 (267)
T 1npe_A 163 QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR-RKVLE-GLQYPFAVTSY--GKNLYYTDWKTNS-VIAMDLA 237 (267)
T ss_dssp CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-EEEEE-CCCSEEEEEEE--TTEEEEEETTTTE-EEEEETT
T ss_pred ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce-EEEec-CCCCceEEEEe--CCEEEEEECCCCe-EEEEeCC
Confidence 22567889999999988888889999999875321 11111 12233455543 344444443 345 7777777
Q ss_pred CCceeeeec
Q psy3710 301 SGQKLNELR 309 (424)
Q Consensus 301 ~~~~~~~~~ 309 (424)
+++.+.++.
T Consensus 238 ~g~~~~~i~ 246 (267)
T 1npe_A 238 ISKEMDTFH 246 (267)
T ss_dssp TTEEEEEEC
T ss_pred CCCceEEEc
Confidence 766665554
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-07 Score=87.74 Aligned_cols=270 Identities=10% Similarity=0.055 Sum_probs=158.1
Q ss_pred eeEeecC-Ce-EEEEeC-CcCcccccccccCCC-----------eeeEEEeccCce----EEEEeCCcCCCcCCCeEEEE
Q psy3710 24 CFACGME-DG-FRIYNC-DPLKEKERQDFTDGG-----------LGHVEMLFRCNY----LALVGGGTHPKYPNNRVMIW 85 (424)
Q Consensus 24 ~la~g~~-~~-i~iw~~-~~~~~~~~~~~~~~~-----------i~~~~~~~~~~~----l~~~~~~~~~~~~d~~i~iw 85 (424)
.+.+++. ++ |.-+|. ++++.+......... ...+...|.+.. +++.+ .|+.|..+
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t-------~dg~l~Al 136 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQ-------LDGNVAAL 136 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEEC-------TTSEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEc-------CCCEEEEE
Confidence 4444444 44 888888 788775544332110 112344334444 55554 47999999
Q ss_pred ECCCCcEEEEEeecC-----CeE-EEEecCCceEEE-e-------eccEEEEeecCCCceeEEEeeCCCCCe--------
Q psy3710 86 DDLKKQVVICLEFNA-----PVK-GVRLRRDKIVVV-L-------EGLIKVYTFIQCPQQLHVFETNPNPKG-------- 143 (424)
Q Consensus 86 d~~~~~~~~~~~~~~-----~v~-~~~~~~~~~~~~-~-------~~~i~v~~~~~~~~~~~~~~~~~~~~~-------- 143 (424)
|.++|+.+.+..... .+. ...+. ++.+++ . ++.|+.+|.+ +++.+..+........
T Consensus 137 Da~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D~~-TG~~~W~~~~~~~~~~~~~~p~~~ 214 (599)
T 1w6s_A 137 NAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVK-TGEQVWRAYATGPDKDLLLASDFN 214 (599)
T ss_dssp ETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETT-TCCEEEEEESSSCHHHHTBCTTTT
T ss_pred ECCCCCEEEeecCCCCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEECC-CCcEEEEEcCCCCccccccccccc
Confidence 999999998876322 222 11222 344443 3 4789999986 7777776654321100
Q ss_pred ---------------------------e-EEEeecCCCCeEEEeeccC----------------CeEEEEeCCCCCCCCc
Q psy3710 144 ---------------------------L-CVLCPNSNNSLLAFPGRKS----------------GHVHLVDLADPERPPL 179 (424)
Q Consensus 144 ---------------------------~-~~~~~~~~~~~l~~~~~~d----------------g~i~i~d~~~~~~~~~ 179 (424)
+ ..+++.++...+++ +..+ +.|..+|.+++ +.+-
T Consensus 215 ~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~-g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG-~~~W 292 (599)
T 1w6s_A 215 IKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYF-GTGNPAPWNETMRPGDNKWTMTIFGRDADTG-EAKF 292 (599)
T ss_dssp TTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEE-ECCCCSCSCGGGSCSCCTTSSEEEEEETTTC-CEEE
T ss_pred cccccccccccccccCCCcceecCCCccccceeEeCCCCEEEE-eCCCCccccCcccCCCccccceEEEEeCCCC-ceee
Confidence 0 02234456666665 5443 47889999887 4443
Q ss_pred cccc--cc--------CCeEEEEEc-cCC---CEEEEEecCCcEEEEEECCCcceeeEEecce-----------------
Q psy3710 180 DIAA--HE--------APLSCIALN-QTG---TRLATASYKGTLIRVFDTGSGQKLNELRRGL----------------- 228 (424)
Q Consensus 180 ~~~~--~~--------~~v~~~~~~-~~~---~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~----------------- 228 (424)
.++. |. .++. +... .+| +.++.++.+|. ++++|.++++.+...+...
T Consensus 293 ~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~ 370 (599)
T 1w6s_A 293 GYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGI-VYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVR 370 (599)
T ss_dssp EEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSE-EEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEE
T ss_pred EeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcE-EEEEECCCCCEeecccccCCcccccccccCCCceee
Confidence 3332 21 2222 2222 467 46777889999 9999999998876654210
Q ss_pred -------------------------eeeeecCCCCeEEEEe--------------------------------e------
Q psy3710 229 -------------------------CVLCPNSNNSLLAFPG--------------------------------R------ 245 (424)
Q Consensus 229 -------------------------~~~~~~~~~~~~~~~~--------------------------------~------ 245 (424)
..++++|+.+.+++.. +
T Consensus 371 ~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~ 450 (599)
T 1w6s_A 371 DPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYE 450 (599)
T ss_dssp CGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTB
T ss_pred ccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCC
Confidence 1234555544443311 1
Q ss_pred cCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec
Q psy3710 246 KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR 309 (424)
Q Consensus 246 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 309 (424)
..|.|..||+.+++..-..- +..+...-.+...+.+++.++.|+. ++.||.++|+.+.++.
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~--~~~~~~~g~~~tagg~vf~gt~dg~-l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKM--ERFAVWGGTMATAGDLVFYGTLDGY-LKARDSDTGDLLWKFK 511 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEE--ESSCCCSBCEEETTTEEEEECTTSE-EEEEETTTCCEEEEEE
T ss_pred CcCeEEEEECCCCCEEeEec--CCCCccCcceEecCCEEEEECCCCe-EEEEECCCCCEEEEee
Confidence 34788999998877432221 1112211112235667888999999 9999999999999885
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=4.4e-07 Score=84.80 Aligned_cols=273 Identities=12% Similarity=0.079 Sum_probs=157.8
Q ss_pred CCCeeEeecCCeEEEEeCCcCcccccccccCCCe---------eeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCc
Q psy3710 21 DQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGL---------GHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ 91 (424)
Q Consensus 21 ~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i---------~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~ 91 (424)
++..++++..++|.-+|.++++.+.......... ..+. ..+..+++.+ .|+.|.-+|.++|+
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a--~~~~~v~~~t-------~dg~l~AlD~~TG~ 138 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAA--IYGDKVFFGT-------LDASVVALNKNTGK 138 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCE--EETTEEEEEE-------TTTEEEEEESSSCC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccE--EECCEEEEEe-------CCCEEEEEECCCCC
Confidence 4444444443558889998888865544322110 1111 2345555555 47999999999999
Q ss_pred EEEEEeecC-----CeE-EEEecCC---c--eEEE-e-------eccEEEEeecCCCceeEEEeeCCCCC----------
Q psy3710 92 VVICLEFNA-----PVK-GVRLRRD---K--IVVV-L-------EGLIKVYTFIQCPQQLHVFETNPNPK---------- 142 (424)
Q Consensus 92 ~~~~~~~~~-----~v~-~~~~~~~---~--~~~~-~-------~~~i~v~~~~~~~~~~~~~~~~~~~~---------- 142 (424)
.+.+..... .+. ...+..+ + .+++ . ++.|..+|.. +++.+..........
T Consensus 139 ~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~-tG~~~W~~~~~~~~~~p~~~~~~~~ 217 (582)
T 1flg_A 139 VVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPD-TGEEIWMRPFVEGHMGRLNGKDSTV 217 (582)
T ss_dssp EEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTT-TCCEEEEEESSTTCEEEETTEEEEE
T ss_pred EEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECC-CCCEEeecCCCccccccccCccccc
Confidence 998876322 111 1112222 1 2333 2 4678888886 677666543321000
Q ss_pred -----------------------------eeEEEeecCCCCeEEEeecc--------------------C----CeEEEE
Q psy3710 143 -----------------------------GLCVLCPNSNNSLLAFPGRK--------------------S----GHVHLV 169 (424)
Q Consensus 143 -----------------------------~~~~~~~~~~~~~l~~~~~~--------------------d----g~i~i~ 169 (424)
.-..++++|+...+++ +.. | +.|..+
T Consensus 218 ~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv-~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~Al 296 (582)
T 1flg_A 218 TGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIV-GAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGV 296 (582)
T ss_dssp SSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEE-EECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEE
T ss_pred ccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEE-eCCCCCcccCcccccCCCcccccCCcccceEEEE
Confidence 0012344556666665 332 2 689999
Q ss_pred eCCCCCCCCcccc--ccc--------CCeEEEEEc-cCCC---EEEEEecCCcEEEEEECCCcceeeEEecce-------
Q psy3710 170 DLADPERPPLDIA--AHE--------APLSCIALN-QTGT---RLATASYKGTLIRVFDTGSGQKLNELRRGL------- 228 (424)
Q Consensus 170 d~~~~~~~~~~~~--~~~--------~~v~~~~~~-~~~~---~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~------- 228 (424)
|..++ +.+-.++ .|. .++. +... .+|+ .++.++.+|. ++++|.++++.+..++...
T Consensus 297 D~~TG-~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~lw~~~~~~~~~~~~~ 373 (582)
T 1flg_A 297 DPSSG-EVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGF-FYVVDRSNGKLQNAFPFVDNITWASH 373 (582)
T ss_dssp CTTTC-CEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSE-EEEEETTTCCEEEEEESSSCCCSEEE
T ss_pred eCCCC-CEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCce-EEEEECCCCCEecccccccCcccccc
Confidence 99887 4444332 221 1221 2221 4674 6788899999 9999999998886654321
Q ss_pred -----------------------------------------eeeeecCCCCeEEEEee----------------------
Q psy3710 229 -----------------------------------------CVLCPNSNNSLLAFPGR---------------------- 245 (424)
Q Consensus 229 -----------------------------------------~~~~~~~~~~~~~~~~~---------------------- 245 (424)
..++++|....+++...
T Consensus 374 ~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~ 453 (582)
T 1flg_A 374 IDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGM 453 (582)
T ss_dssp ECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred ccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceecc
Confidence 01234454444444221
Q ss_pred ----------cCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeecc
Q psy3710 246 ----------KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRR 310 (424)
Q Consensus 246 ----------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~ 310 (424)
.+|.|..||+.+++..-+. .. ..++..-.....+.+++.++.|+. ++.||.++|+.+.++..
T Consensus 454 ~~~~~p~~~~~~G~l~A~D~~tG~~~W~~-~~-~~~~~~g~~~tagglvf~g~~dg~-l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 454 GFRIKRMYDDHVGSLRAMDPVSGKVVWEH-KE-HLPLWAGVLATAGNLVFTGTGDGY-FKAFDAKSGKELWKFQT 525 (582)
T ss_dssp EEEEEESCSSCSEEEEEECTTTCCEEEEE-EE-SSCCCSCCEEETTTEEEEECTTSE-EEEEETTTCCEEEEEEC
T ss_pred ceeecCCCCCCcceEEEEECCCCCEEEEe-cC-CCCCcccceEeCCCEEEEECCCCc-EEEEECCCCCEEEEecC
Confidence 2578999999988743222 11 112221112224668888999999 99999999999998864
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-05 Score=68.94 Aligned_cols=213 Identities=13% Similarity=0.180 Sum_probs=148.5
Q ss_pred EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEe-cCCc
Q psy3710 33 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRL-RRDK 111 (424)
Q Consensus 33 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~-~~~~ 111 (424)
|.|.|+.......+... .. -+.-+.|..+.+|+-. ..++.|+|+++.+.++.+..+.+|.--.| +++.
T Consensus 50 vvIiDl~~~~~~~rrpi-~A--dsAIMnP~~~iiALra--------g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~ 118 (494)
T 1bpo_A 50 VVIIDMNDPSNPIRRPI-SA--DSAIMNPASKVIALKA--------GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT 118 (494)
T ss_dssp EEEEETTSTTSCEEEEC-CC--SEEEECSSSSCEEEEE--------TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTE
T ss_pred EEEEECCCCCcceeccc-cc--ceeeeCCCCcEEEEec--------CCeEEEEchHHhhhhcceecCCCceEEEecCCCe
Confidence 99999887766533322 11 1244678888888776 37999999999999999998888888777 5666
Q ss_pred eEEEeeccEEEEeecCCCceeEEEeeCCC--CCeeEEEeecCCCCeEEEeec------cCCeEEEEeCCCCCCCCccccc
Q psy3710 112 IVVVLEGLIKVYTFIQCPQQLHVFETNPN--PKGLCVLCPNSNNSLLAFPGR------KSGHVHLVDLADPERPPLDIAA 183 (424)
Q Consensus 112 ~~~~~~~~i~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~------~dg~i~i~d~~~~~~~~~~~~~ 183 (424)
..++++..|+.|++..+..+.+.+..|.. ...+.....+++.++++..|- -.|.+.+|..+. +.-+.+++
T Consensus 119 l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er--~~sQ~ieG 196 (494)
T 1bpo_A 119 VALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQPIEG 196 (494)
T ss_dssp EEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT--CCEEEECC
T ss_pred EEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc--cccchhee
Confidence 77778999999999756677777776542 456788888999999987553 358899999986 56677888
Q ss_pred ccCCeEEEEEccCC---CEEEEEecC---CcEEEEEECCCc---ce-----eeEEe--c----c-eeeeeecCCCCeEEE
Q psy3710 184 HEAPLSCIALNQTG---TRLATASYK---GTLIRVFDTGSG---QK-----LNELR--R----G-LCVLCPNSNNSLLAF 242 (424)
Q Consensus 184 ~~~~v~~~~~~~~~---~~l~~~~~d---~~~i~iwd~~~~---~~-----~~~~~--~----~-~~~~~~~~~~~~~~~ 242 (424)
|.+....+.+..+. ..++.+... +. +++.++... .. ...+. . + .-.+.+++..+.+.+
T Consensus 197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~k-Lhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyv 275 (494)
T 1bpo_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (494)
T ss_dssp SEEEEEEEECTTCSSEEEEEEEEECSTTCCE-EEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcE-EEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEE
Confidence 87766555543321 234444432 56 999998543 11 11111 1 1 234555666665554
Q ss_pred EeecCCeEEEEeCCCCCC
Q psy3710 243 PGRKSGHVHLVDLADPER 260 (424)
Q Consensus 243 ~~~~dg~i~i~d~~~~~~ 260 (424)
-+.-|.|++||+.++..
T Consensus 276 -iTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 276 -ITKYGYIHLYDLETGTC 292 (494)
T ss_dssp -EETTSEEEEEETTTCCE
T ss_pred -EecCceEEEEeccccee
Confidence 88999999999998764
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=9.7e-07 Score=72.83 Aligned_cols=197 Identities=12% Similarity=-0.052 Sum_probs=127.8
Q ss_pred ccCC--ceEEEEECCCCCeeEeecC---CeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeE
Q psy3710 8 TYKN--GLLYAGFNQDQGCFACGME---DGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 8 ~h~~--~V~~~~~s~~g~~la~g~~---~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 82 (424)
.|.. ....++|+||+.++++.+. +.|.++|..+++......... ......+.++++.+..+... ++.+
T Consensus 16 p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~-~~fgeGi~~~g~~lyv~t~~------~~~v 88 (266)
T 2iwa_A 16 PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD-SYFGEGLTLLNEKLYQVVWL------KNIG 88 (266)
T ss_dssp ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEETT------CSEE
T ss_pred ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC-CcceEEEEEeCCEEEEEEec------CCEE
Confidence 4553 3578999998755554432 339999999998865544322 22223455567777777653 7999
Q ss_pred EEEECCCCcEEEEEeec-CCeEEEEecCCc-eEEEe--eccEEEEeecCCCceeEEEeeCCCCC---eeEEEeecCCCCe
Q psy3710 83 MIWDDLKKQVVICLEFN-APVKGVRLRRDK-IVVVL--EGLIKVYTFIQCPQQLHVFETNPNPK---GLCVLCPNSNNSL 155 (424)
Q Consensus 83 ~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~-~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 155 (424)
.++|..+.+.+.++... ..-..+ ++|+ .++++ ++.|.++|.. +.+.+..+.....+. ....+.+. ++..
T Consensus 89 ~viD~~t~~v~~~i~~g~~~g~gl--t~Dg~~l~vs~gs~~l~viD~~-t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l 164 (266)
T 2iwa_A 89 FIYDRRTLSNIKNFTHQMKDGWGL--ATDGKILYGSDGTSILYEIDPH-TFKLIKKHNVKYNGHRVIRLNELEYI-NGEV 164 (266)
T ss_dssp EEEETTTTEEEEEEECCSSSCCEE--EECSSSEEEECSSSEEEEECTT-TCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEECCCCcEEEEEECCCCCeEEE--EECCCEEEEECCCCeEEEEECC-CCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence 99999999999998855 333344 4454 33334 6789999986 667777666432211 24456666 6654
Q ss_pred EEEeeccCCeEEEEeCCCCCCCCcccccc-------------cCCeEEEEEccCCCEEEE-EecCCcEEEEEECCCc
Q psy3710 156 LAFPGRKSGHVHLVDLADPERPPLDIAAH-------------EAPLSCIALNQTGTRLAT-ASYKGTLIRVFDTGSG 218 (424)
Q Consensus 156 l~~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~-~~~d~~~i~iwd~~~~ 218 (424)
.+. ...++.|.+.|..++ +....+... ......|+|+|+++.++. +...+. +...++...
T Consensus 165 yvn-~~~~~~V~vID~~tg-~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~-v~~i~l~~~ 238 (266)
T 2iwa_A 165 WAN-IWQTDCIARISAKDG-TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK-LFEIKLHLV 238 (266)
T ss_dssp EEE-ETTSSEEEEEETTTC-CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE-EEEEEEEEC
T ss_pred EEe-cCCCCeEEEEECCCC-cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe-EEEEEEecc
Confidence 443 667889999999987 444444321 135689999999876555 445666 777777543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.91 E-value=6.7e-07 Score=72.83 Aligned_cols=177 Identities=16% Similarity=0.133 Sum_probs=123.2
Q ss_pred eeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCe--EEEEecCCceEEEe--eccEEEEeecCCC
Q psy3710 54 LGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPV--KGVRLRRDKIVVVL--EGLIKVYTFIQCP 129 (424)
Q Consensus 54 i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~--~~~i~v~~~~~~~ 129 (424)
...+.+. ++ .|..+.+.. ....|+++|+++++.+.++...... ..+.+..+..+++. ++.+.+||.. +.
T Consensus 45 tqGL~~~-~~-~LyestG~~----g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~-t~ 117 (262)
T 3nol_A 45 TEGFFYR-NG-YFYESTGLN----GRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIR-NL 117 (262)
T ss_dssp EEEEEEE-TT-EEEEEEEET----TEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT-TC
T ss_pred cceEEEE-CC-EEEEECCCC----CCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECc-cC
Confidence 3557776 44 444333321 1249999999999999999866555 34677777777777 8999999996 88
Q ss_pred ceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccc--c---CCeEEEEEccCCCEEEEEe
Q psy3710 130 QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAH--E---APLSCIALNQTGTRLATAS 204 (424)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~~~~ 204 (424)
+.+.++....... ..+++++.|+. +..++.|.++|..+. +....+... . ..++.+.|. +|+..+..-
T Consensus 118 ~~~~ti~~~~eG~-----glt~dg~~L~~-SdGs~~i~~iDp~T~-~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w 189 (262)
T 3nol_A 118 RQVRSFNYDGEGW-----GLTHNDQYLIM-SDGTPVLRFLDPESL-TPVRTITVTAHGEELPELNELEWV-DGEIFANVW 189 (262)
T ss_dssp CEEEEEECSSCCC-----CEEECSSCEEE-CCSSSEEEEECTTTC-SEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred cEEEEEECCCCce-----EEecCCCEEEE-ECCCCeEEEEcCCCC-eEEEEEEeccCCccccccceeEEE-CCEEEEEEc
Confidence 8888887654332 22346777777 445788999999886 444443321 1 334567776 676555555
Q ss_pred cCCcEEEEEECCCcceeeEEecc---------------eeeeeecCCCCeEEEEeec
Q psy3710 205 YKGTLIRVFDTGSGQKLNELRRG---------------LCVLCPNSNNSLLAFPGRK 246 (424)
Q Consensus 205 ~d~~~i~iwd~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 246 (424)
.+.. |.+.|.++++.+..+... .+.++++|+++.++++|-.
T Consensus 190 ~~~~-I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 190 QTNK-IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TSSE-EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred cCCe-EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 6777 999999999998877642 3668999999999987743
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.5e-07 Score=73.82 Aligned_cols=172 Identities=11% Similarity=0.057 Sum_probs=124.0
Q ss_pred eeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeE--EEEecCCceEEEe--eccEEEEeecCCCc
Q psy3710 55 GHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVK--GVRLRRDKIVVVL--EGLIKVYTFIQCPQ 130 (424)
Q Consensus 55 ~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~--~~~i~v~~~~~~~~ 130 (424)
..+.+. ++.|..+.+. ++.|+++|+++++.+..+ ...... .+++..+..+++. ++.+.+||.. +.+
T Consensus 58 qGL~~~--~~~Ly~stG~------~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~-Tl~ 127 (268)
T 3nok_A 58 QGLVFH--QGHFFESTGH------QGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGM-PPQ 127 (268)
T ss_dssp EEEEEE--TTEEEEEETT------TTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETT-TTE
T ss_pred ceEEEE--CCEEEEEcCC------CCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECC-cCc
Confidence 445554 5666655553 688999999999999988 766554 4777777777777 8999999996 888
Q ss_pred eeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCccccc--cc---CCeEEEEEccCCCEEEEEec
Q psy3710 131 QLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAA--HE---APLSCIALNQTGTRLATASY 205 (424)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~~ 205 (424)
.+.++....... .++ ++++.|+. +..++.|.++|..+. +....+.. +. ..++.+.|. +|+..+....
T Consensus 128 ~~~ti~~~~eGw---GLt--~Dg~~L~v-SdGs~~l~~iDp~T~-~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~ 199 (268)
T 3nok_A 128 RERTTRYSGEGW---GLC--YWNGKLVR-SDGGTMLTFHEPDGF-ALVGAVQVKLRGQPVELINELECA-NGVIYANIWH 199 (268)
T ss_dssp EEEEEECSSCCC---CEE--EETTEEEE-ECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred EEEEEeCCCcee---EEe--cCCCEEEE-ECCCCEEEEEcCCCC-eEEEEEEeCCCCcccccccccEEe-CCEEEEEECC
Confidence 888888654332 223 46778877 456899999999886 44444332 21 245667777 6765555545
Q ss_pred CCcEEEEEECCCcceeeEEecc----------------eeeeeecCCCCeEEEEee
Q psy3710 206 KGTLIRVFDTGSGQKLNELRRG----------------LCVLCPNSNNSLLAFPGR 245 (424)
Q Consensus 206 d~~~i~iwd~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ 245 (424)
+.. |.+.|.++++.+..+... .+.++++|++..++++|-
T Consensus 200 s~~-I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 200 SSD-VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CSE-EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCe-EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 677 999999999988877632 366899999999988774
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4e-06 Score=72.52 Aligned_cols=229 Identities=14% Similarity=0.041 Sum_probs=137.2
Q ss_pred ceEEEEECCCCCeeEeecCCe-EEEEeCCcCccccccc-------------------ccCCCeeeEEEeccCceEEEEeC
Q psy3710 12 GLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQD-------------------FTDGGLGHVEMLFRCNYLALVGG 71 (424)
Q Consensus 12 ~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~-------------------~~~~~i~~~~~~~~~~~l~~~~~ 71 (424)
...+++++++|+++.++..++ |..|+.+..+...... ...+....+.+.++...|.++..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 456688999998777776666 9999876543321100 00124567788873444555542
Q ss_pred CcCCCcCCCeEEEEECCCCcEEEEEe--e----cCCeEEEEecC-CceEEEee--------------------ccEEEEe
Q psy3710 72 GTHPKYPNNRVMIWDDLKKQVVICLE--F----NAPVKGVRLRR-DKIVVVLE--------------------GLIKVYT 124 (424)
Q Consensus 72 ~~~~~~~d~~i~iwd~~~~~~~~~~~--~----~~~v~~~~~~~-~~~~~~~~--------------------~~i~v~~ 124 (424)
.+.+..+|..+++. ..+. . ......+++.+ ++.+.+++ +.|..||
T Consensus 100 -------~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 100 -------YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp -------TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred -------CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 35588888765542 2222 1 13478899999 88666653 4577777
Q ss_pred ecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCC-CCcccccccCCeEEEEEccCCCEEEEE
Q psy3710 125 FIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER-PPLDIAAHEAPLSCIALNQTGTRLATA 203 (424)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~ 203 (424)
.. .++.......... ...++++++++.|.++-...+.|..|++..... ....+....+ ...+++.++|++.++.
T Consensus 172 ~~-~~~~~~~~~~~~~---p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~ 246 (322)
T 2fp8_A 172 PS-TKETTLLLKELHV---PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSS 246 (322)
T ss_dssp TT-TTEEEEEEEEESC---CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEE
T ss_pred CC-CCEEEEeccCCcc---CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEe
Confidence 53 3332222222222 235788999987776456778999999875311 1111111223 7889999999876665
Q ss_pred ec----------CCcEEEEEECCCcceeeEEecc-------eeeeeecCCCCeEEEEeecCCeEEEEeCCC
Q psy3710 204 SY----------KGTLIRVFDTGSGQKLNELRRG-------LCVLCPNSNNSLLAFPGRKSGHVHLVDLAD 257 (424)
Q Consensus 204 ~~----------d~~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 257 (424)
.. .+. |..+|. .++.+..+..+ ...++. .+..++++...++.|..+++..
T Consensus 247 ~~~~~~~~~~~~~~~-v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~--~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 247 SEELDGNMHGRVDPK-GIKFDE-FGNILEVIPLPPPFAGEHFEQIQE--HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEETTSSTTSCEEEE-EEEECT-TSCEEEEEECCTTTTTSCCCEEEE--ETTEEEEECSSCSEEEEEEC--
T ss_pred cCcccccccCCCccE-EEEECC-CCCEEEEEECCCCCccccceEEEE--eCCEEEEeecCCCceEEEeccc
Confidence 44 456 888886 46666666532 222333 3566777677788888888764
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.6e-06 Score=67.99 Aligned_cols=177 Identities=18% Similarity=0.131 Sum_probs=123.2
Q ss_pred eeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCe--EEEEecCCceEEEe--eccEEEEeecCCC
Q psy3710 54 LGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPV--KGVRLRRDKIVVVL--EGLIKVYTFIQCP 129 (424)
Q Consensus 54 i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~--~~~i~v~~~~~~~ 129 (424)
...+.|.. +.|...++.. .+..|+.+|+++++.+..+...... ..+++..+..+.+. ++.+.+||.. +.
T Consensus 23 tqGL~~~~--~~LyestG~~----g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~-tl 95 (243)
T 3mbr_X 23 TEGLFYLR--GHLYESTGET----GRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLA-TL 95 (243)
T ss_dssp EEEEEEET--TEEEEEECCT----TSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT-TT
T ss_pred cccEEEEC--CEEEEECCCC----CCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECC-cC
Confidence 44566654 4555554431 2469999999999999999865554 44566666677776 8999999996 88
Q ss_pred ceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccc--c---CCeEEEEEccCCCEEEEEe
Q psy3710 130 QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAH--E---APLSCIALNQTGTRLATAS 204 (424)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~~~~ 204 (424)
+.+.++....... .++ ++++.|++ +..++.|.++|..+. +....+.-. . ..++.+.+. +|+..+..-
T Consensus 96 ~~~~ti~~~~~Gw---glt--~dg~~L~v-Sdgs~~l~~iDp~t~-~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw 167 (243)
T 3mbr_X 96 TPRARFRYPGEGW---ALT--SDDSHLYM-SDGTAVIRKLDPDTL-QQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW 167 (243)
T ss_dssp EEEEEEECSSCCC---EEE--ECSSCEEE-ECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred cEEEEEeCCCCce---EEe--eCCCEEEE-ECCCCeEEEEeCCCC-eEEEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence 8888887654332 333 46777776 456889999999886 444444321 1 345566665 666555554
Q ss_pred cCCcEEEEEECCCcceeeEEecc----------------eeeeeecCCCCeEEEEeec
Q psy3710 205 YKGTLIRVFDTGSGQKLNELRRG----------------LCVLCPNSNNSLLAFPGRK 246 (424)
Q Consensus 205 ~d~~~i~iwd~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~ 246 (424)
.+.. |.+.|.++++.+..+... .+.++++|.+..++++|-.
T Consensus 168 ~s~~-I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 168 LTSR-IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp TTTE-EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred CCCe-EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 5677 999999999988877622 3668999999999987743
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.83 E-value=5.8e-07 Score=73.23 Aligned_cols=187 Identities=9% Similarity=-0.001 Sum_probs=121.8
Q ss_pred ccCCc--eEEEEECCCCCeeEeecCC---eEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeE
Q psy3710 8 TYKNG--LLYAGFNQDQGCFACGMED---GFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 8 ~h~~~--V~~~~~s~~g~~la~g~~~---~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 82 (424)
.|... ...+.|+ ++.++.+++.. .|+.+|+++++........ .......+.++++.+..+.. .++.+
T Consensus 38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw------~~~~v 109 (262)
T 3nol_A 38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTW------KNGLG 109 (262)
T ss_dssp ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEES------SSSEE
T ss_pred cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEe------eCCEE
Confidence 45443 3778888 66555554443 2999999999887665553 34444445566777777764 37999
Q ss_pred EEEECCCCcEEEEEeecCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCC--C-CeeEEEeecCCCCeEE
Q psy3710 83 MIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPN--P-KGLCVLCPNSNNSLLA 157 (424)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~l~ 157 (424)
.++|.++.+.+.++.....-..++... ..++.+ ++.|.++|.. +.+.+..+..... + ..+..+.+. +|+..+
T Consensus 110 ~v~D~~t~~~~~ti~~~~eG~glt~dg-~~L~~SdGs~~i~~iDp~-T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lya 186 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDGEGWGLTHND-QYLIMSDGTPVLRFLDPE-SLTPVRTITVTAHGEELPELNELEWV-DGEIFA 186 (262)
T ss_dssp EEEETTTCCEEEEEECSSCCCCEEECS-SCEEECCSSSEEEEECTT-TCSEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEEECccCcEEEEEECCCCceEEecCC-CEEEEECCCCeEEEEcCC-CCeEEEEEEeccCCccccccceeEEE-CCEEEE
Confidence 999999999999999655444555432 334444 4568999986 6777777665322 1 123345554 666554
Q ss_pred EeeccCCeEEEEeCCCCCCCCccccc------------ccCCeEEEEEccCCCEEEEEecCC
Q psy3710 158 FPGRKSGHVHLVDLADPERPPLDIAA------------HEAPLSCIALNQTGTRLATASYKG 207 (424)
Q Consensus 158 ~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~~d~ 207 (424)
. ...+..|.+.|.+++ +....+.. -..-.+.|+|+|+++.|+..+..=
T Consensus 187 n-~w~~~~I~vIDp~tG-~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W 246 (262)
T 3nol_A 187 N-VWQTNKIVRIDPETG-KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW 246 (262)
T ss_dssp E-ETTSSEEEEECTTTC-BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred E-EccCCeEEEEECCCC-cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC
Confidence 4 667889999999886 43332221 123458999999988887776543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.8e-05 Score=66.87 Aligned_cols=222 Identities=10% Similarity=-0.005 Sum_probs=138.0
Q ss_pred CCeEEEEECCCCcEEEEEeecCCeEEEEecCCc-eEEEe---eccEEEEeecCC---CceeEEEeeCCCCCeeEEEeecC
Q psy3710 79 NNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDK-IVVVL---EGLIKVYTFIQC---PQQLHVFETNPNPKGLCVLCPNS 151 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~---~~~i~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 151 (424)
.+.|+..|+.+.+....+.....+.+++|.+.+ .+..+ .+.|..+++... ......+.... .....+++++
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~--~~p~glavd~ 86 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI--QAPDGLAVDW 86 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC--SCCCEEEEET
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC--CCcCEEEEee
Confidence 467999999887766655556678899999754 44444 578888887521 12222222111 1234566676
Q ss_pred CCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecC--CcEEEEEECCCcceeeEE-ec--
Q psy3710 152 NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK--GTLIRVFDTGSGQKLNEL-RR-- 226 (424)
Q Consensus 152 ~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~~i~iwd~~~~~~~~~~-~~-- 226 (424)
.+..|..+-...+.|.++++... .....+...-.....+++.|.+..|+.+... +. |...++... ....+ ..
T Consensus 87 ~~~~ly~~d~~~~~I~~~~~~g~-~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~-I~~~~~dG~-~~~~~~~~~~ 163 (316)
T 1ijq_A 87 IHSNIYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNGV-DIYSLVTENI 163 (316)
T ss_dssp TTTEEEEEETTTTEEEEEETTSS-SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE-EEEEETTSC-CEEEEECSSC
T ss_pred cCCeEEEEECCCCEEEEEeCCCC-ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCe-EEEEcCCCC-CeEEEEECCC
Confidence 56666654677889999998753 2222222233567899999976666555443 56 888887543 33332 21
Q ss_pred -ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCc
Q psy3710 227 -GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA--AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQ 303 (424)
Q Consensus 227 -~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~ 303 (424)
....++++++++.++++-...+.|..+|+..... ..... ..-.....+++. .+..+++-...+. |..++..+|+
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~-V~~~~~~~g~ 240 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA-IFSANRLTGS 240 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE-EEEEETTTCC
T ss_pred CCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CCEEEEEECCCCe-EEEEeCCCCc
Confidence 2567899999999998788889999999975332 11211 123456778885 3444455555566 8888887777
Q ss_pred eeeee
Q psy3710 304 KLNEL 308 (424)
Q Consensus 304 ~~~~~ 308 (424)
.+..+
T Consensus 241 ~~~~i 245 (316)
T 1ijq_A 241 DVNLL 245 (316)
T ss_dssp CCEEE
T ss_pred ceEEE
Confidence 65554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.76 E-value=7.7e-05 Score=65.04 Aligned_cols=234 Identities=6% Similarity=-0.045 Sum_probs=141.9
Q ss_pred CCceEEEEECCCCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC
Q psy3710 10 KNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK 89 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~ 89 (424)
.+..+|.+..++ .+|..+....|+..+++......... .......++|.+..+.|..+... .+.|..+++..
T Consensus 33 ~d~~~C~~~~~~-~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~------~~~I~r~~~~g 104 (349)
T 3v64_C 33 PDRRSCKALGPE-PVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVT------LDRILRANLNG 104 (349)
T ss_dssp TTSSCEEESSSC-CEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETT------TTEEEEEETTS
T ss_pred CCCCcccccccC-ceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEecc------CCceEEEecCC
Confidence 344556666663 45666665668888876544322222 23446788999888888777643 58999999876
Q ss_pred CcEEEEEe-ecCCeEEEEecCC-ceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccC-
Q psy3710 90 KQVVICLE-FNAPVKGVRLRRD-KIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKS- 163 (424)
Q Consensus 90 ~~~~~~~~-~~~~v~~~~~~~~-~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d- 163 (424)
+.....+. .......+++.+. +.+..+ .+.|.+.+++ +.....+.. ........++++|.+..|..+-...
T Consensus 105 ~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d--G~~~~~l~~-~~l~~P~~iavdp~~g~ly~td~~~~ 181 (349)
T 3v64_C 105 SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD--GAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNT 181 (349)
T ss_dssp CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEC-TTCSCEEEEEEETTTTEEEEEECSSS
T ss_pred CCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC--CCceEEEEe-CCCCCcceEEEecCcCeEEEeccCCC
Confidence 65443333 2345678888864 444444 4678888875 332232221 1223356778888777777645555
Q ss_pred CeEEEEeCCCCCCCCccc-ccccCCeEEEEEccCCCEEEEEec-CCcEEEEEECCCcceeeEEec---ceeeeeecCCCC
Q psy3710 164 GHVHLVDLADPERPPLDI-AAHEAPLSCIALNQTGTRLATASY-KGTLIRVFDTGSGQKLNELRR---GLCVLCPNSNNS 238 (424)
Q Consensus 164 g~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-d~~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~ 238 (424)
+.|..++++.. ....+ ...-.....++++|++..|+.+.. .+. |..+|+........+.. +...+++ .+.
T Consensus 182 ~~I~r~~~dG~--~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~-I~~~~~dG~~~~~~~~~~~~~P~giav--~~~ 256 (349)
T 3v64_C 182 PRIEASSMDGS--GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV-IERANLDGSHRKAVISQGLPHPFAITV--FED 256 (349)
T ss_dssp CEEEEEETTSC--SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEECSSCSSEEEEEE--ETT
T ss_pred CEEEEEeCCCC--CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCE-EEEEeCCCCceEEEEeCCCCCceEEEE--ECC
Confidence 78999888753 22222 223345689999987777666654 456 99999865433222221 2344555 345
Q ss_pred eEEEEeecCCeEEEEeCCCCC
Q psy3710 239 LLAFPGRKSGHVHLVDLADPE 259 (424)
Q Consensus 239 ~~~~~~~~dg~i~i~d~~~~~ 259 (424)
.++++-...+.|..++..+++
T Consensus 257 ~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 257 SLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EEEEEETTTTEEEEEETTTCC
T ss_pred EEEEecCCCCeEEEEEccCCC
Confidence 666666677888888765544
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.9e-05 Score=67.32 Aligned_cols=231 Identities=6% Similarity=-0.048 Sum_probs=140.3
Q ss_pred eEEEEECCCCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcE
Q psy3710 13 LLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQV 92 (424)
Q Consensus 13 V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~ 92 (424)
-+|.+..+ ..+|..+....|+..+++......... .......++|.+..+.|..+... .+.|..++...+..
T Consensus 79 ~~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~------~~~I~r~~~~g~~~ 150 (386)
T 3v65_B 79 RSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVT------LDRILRANLNGSNV 150 (386)
T ss_dssp SCEEECSS-CCEEEEECBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCCE
T ss_pred CeECCccc-cceeEeecCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCC------CCcEEEEecCCCCc
Confidence 34555555 345666666668888887654432222 23456778999888888777643 58999999876654
Q ss_pred EEEEe-ecCCeEEEEecCC-ceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccC-CeE
Q psy3710 93 VICLE-FNAPVKGVRLRRD-KIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKS-GHV 166 (424)
Q Consensus 93 ~~~~~-~~~~v~~~~~~~~-~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d-g~i 166 (424)
...+. .......+++.+. +.+..+ .+.|.+.++. +.....+.. ........++++|.+..|+.+-... +.|
T Consensus 151 ~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d--g~~~~~l~~-~~l~~P~giavdp~~g~ly~td~~~~~~I 227 (386)
T 3v65_B 151 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD--GAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRI 227 (386)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT--SCSCEEEEC-SSCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC--CCceEEeec-CCCCCCcEEEEEcCCCeEEEeccCCCCEE
Confidence 44333 2335567888864 444444 4578887774 322222222 1123356778888777777644444 788
Q ss_pred EEEeCCCCCCCCccc-ccccCCeEEEEEccCCCEEEEEec-CCcEEEEEECCCcceeeEEec---ceeeeeecCCCCeEE
Q psy3710 167 HLVDLADPERPPLDI-AAHEAPLSCIALNQTGTRLATASY-KGTLIRVFDTGSGQKLNELRR---GLCVLCPNSNNSLLA 241 (424)
Q Consensus 167 ~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-d~~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 241 (424)
..++++.. ....+ ...-.....|+++|++..|+.+.. .+. |..+|+........+.. +...+++ ++..++
T Consensus 228 ~r~~~dG~--~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~-I~~~d~dG~~~~~~~~~~~~~P~giav--~~~~ly 302 (386)
T 3v65_B 228 EASSMDGS--GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV-IERANLDGSHRKAVISQGLPHPFAITV--FEDSLY 302 (386)
T ss_dssp EEEETTSC--SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTE-EEEECTTSCSCEEEECSSCSSEEEEEE--ETTEEE
T ss_pred EEEeCCCC--CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCE-EEEEeCCCCeeEEEEECCCCCceEEEE--ECCEEE
Confidence 88888753 22222 223345689999987776666554 455 99999865433222221 2344555 445677
Q ss_pred EEeecCCeEEEEeCCCCC
Q psy3710 242 FPGRKSGHVHLVDLADPE 259 (424)
Q Consensus 242 ~~~~~dg~i~i~d~~~~~ 259 (424)
++....+.|..+|..+++
T Consensus 303 ~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 303 WTDWHTKSINSANKFTGK 320 (386)
T ss_dssp EEETTTTEEEEEETTTCC
T ss_pred EeeCCCCeEEEEECCCCc
Confidence 767778888888865554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.5e-05 Score=67.23 Aligned_cols=223 Identities=10% Similarity=-0.016 Sum_probs=137.6
Q ss_pred CCeEEEEECCCCcEEEEEeecCCeEEEEecCC-ceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCC
Q psy3710 79 NNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD-KIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNS 154 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (424)
.+.|+..++........+.....+.+++|.+. +.+..+ .+.|..+++. .......+.... .....+++.+.+.
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~-g~~~~~~~~~~~--~~p~glavd~~~g 128 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVVSTGL--ESPGGLAVDWVHD 128 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSC--SCCCEEEEETTTT
T ss_pred ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecC-CCCceEEEeCCC--CCccEEEEecCCC
Confidence 36788888876665554444566889999864 444444 5778888875 322222222111 1233566776666
Q ss_pred eEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEe-cC-CcEEEEEECCCcceeeEEec---cee
Q psy3710 155 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS-YK-GTLIRVFDTGSGQKLNELRR---GLC 229 (424)
Q Consensus 155 ~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~~i~iwd~~~~~~~~~~~~---~~~ 229 (424)
.|..+-...+.|.+.+++.. .....+...-.....++++|.+..|+... .. +. |...++........... ...
T Consensus 129 ~ly~~d~~~~~I~~~~~dG~-~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~-I~r~~~dG~~~~~~~~~~~~~Pn 206 (349)
T 3v64_C 129 KLYWTDSGTSRIEVANLDGA-HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR-IEASSMDGSGRRIIADTHLFWPN 206 (349)
T ss_dssp EEEEEETTTTEEEEEETTSC-SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCE-EEEEETTSCSCEESCCSSCSCEE
T ss_pred eEEEEcCCCCeEEEEcCCCC-ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCE-EEEEeCCCCCcEEEEECCCCCcc
Confidence 66654667789999998763 22222223335678999999666555544 34 66 88888864432222222 256
Q ss_pred eeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec
Q psy3710 230 VLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR 309 (424)
Q Consensus 230 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 309 (424)
.++++++++.+.++-...+.|..+|+..... ...+.........+++. .+..+.+-...+. |..++..+|+.+..+.
T Consensus 207 Gla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~~~~~~P~giav~-~~~ly~td~~~~~-V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 207 GLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITVF-EDSLYWTDWHTKS-INSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEE-TTEEEEEETTTTE-EEEEETTTCCSCEEEE
T ss_pred eEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEEEeCCCCCceEEEEE-CCEEEEecCCCCe-EEEEEccCCCccEEec
Confidence 7899999999998888889999999875332 22232334566778883 3444444444555 8888866676655543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.2e-06 Score=69.77 Aligned_cols=179 Identities=15% Similarity=0.026 Sum_probs=118.7
Q ss_pred eEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCc
Q psy3710 13 LLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ 91 (424)
Q Consensus 13 V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~ 91 (424)
...+.|+. +.++.+.+.++ |+++|+++++..... . ..........+.++.+..+.. .++.+.++|.++.+
T Consensus 57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw------~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGERLYQLTW------TEGLLFTWSGMPPQ 127 (268)
T ss_dssp EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEES------SSCEEEEEETTTTE
T ss_pred cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEEc------cCCEEEEEECCcCc
Confidence 36788873 44445555555 999999999987666 4 334444445667777776664 37999999999999
Q ss_pred EEEEEeecCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCCe---eEEEeecCCCCeEEEeeccCCeE
Q psy3710 92 VVICLEFNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKG---LCVLCPNSNNSLLAFPGRKSGHV 166 (424)
Q Consensus 92 ~~~~~~~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~dg~i 166 (424)
.+.++.....-..++.... .++.+ ++.|.++|.. +.+.+..+.....+.. +..+.+. +|+..+. ...+..|
T Consensus 128 ~~~ti~~~~eGwGLt~Dg~-~L~vSdGs~~l~~iDp~-T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyan-vw~s~~I 203 (268)
T 3nok_A 128 RERTTRYSGEGWGLCYWNG-KLVRSDGGTMLTFHEPD-GFALVGAVQVKLRGQPVELINELECA-NGVIYAN-IWHSSDV 203 (268)
T ss_dssp EEEEEECSSCCCCEEEETT-EEEEECSSSEEEEECTT-TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE-ETTCSEE
T ss_pred EEEEEeCCCceeEEecCCC-EEEEECCCCEEEEEcCC-CCeEEEEEEeCCCCcccccccccEEe-CCEEEEE-ECCCCeE
Confidence 9999996555556665433 34444 6789999986 6777777665433222 3445555 6655544 5678899
Q ss_pred EEEeCCCCCCCCccccc-------------ccCCeEEEEEccCCCEEEEEec
Q psy3710 167 HLVDLADPERPPLDIAA-------------HEAPLSCIALNQTGTRLATASY 205 (424)
Q Consensus 167 ~i~d~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~ 205 (424)
.+.|.+++ +....+.. -.+-.+.|+++|+++.|+..+.
T Consensus 204 ~vIDp~TG-~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 204 LEIDPATG-TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEECTTTC-BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEeCCCC-cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 99999887 43333221 1235689999998776666554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.73 E-value=3e-05 Score=68.65 Aligned_cols=222 Identities=9% Similarity=-0.007 Sum_probs=138.9
Q ss_pred CCeEEEEECCCCcEEEEEeecCCeEEEEecCC-ceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCC
Q psy3710 79 NNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD-KIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNS 154 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (424)
...|+..++..+.....+.....+.+++|.+. +.++.+ .+.|..+++. .......+.... .....+++++.+.
T Consensus 95 ~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~-g~~~~~~~~~~~--~~p~glavd~~~g 171 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVVSTGL--ESPGGLAVDWVHD 171 (386)
T ss_dssp BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCCEEEEECSSC--SCCCCEEEETTTT
T ss_pred CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecC-CCCcEEEEeCCC--CCccEEEEEeCCC
Confidence 46788888877665555555567889999964 444444 5788888875 332222222111 1123456676666
Q ss_pred eEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEec-C-CcEEEEEECCCcceeeEEecc---ee
Q psy3710 155 LLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY-K-GTLIRVFDTGSGQKLNELRRG---LC 229 (424)
Q Consensus 155 ~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~~i~iwd~~~~~~~~~~~~~---~~ 229 (424)
.|+.+-...+.|.+.+++.. .....+...-.....+++.|.+..|+.... . +. |...++............ ..
T Consensus 172 ~lY~~d~~~~~I~~~~~dg~-~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~-I~r~~~dG~~~~~~~~~~~~~Pn 249 (386)
T 3v65_B 172 KLYWTDSGTSRIEVANLDGA-HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR-IEASSMDGSGRRIIADTHLFWPN 249 (386)
T ss_dssp EEEEEETTTTEEEECBTTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCE-EEEEETTSCSCEEEECSSCSCEE
T ss_pred eEEEEcCCCCeEEEEeCCCC-ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCE-EEEEeCCCCCcEEEEECCCCCee
Confidence 66664667788999888753 222223333356789999997766665543 3 56 888888654333322222 56
Q ss_pred eeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeee
Q psy3710 230 VLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNEL 308 (424)
Q Consensus 230 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~ 308 (424)
.++++++++.++++-...+.|..+|+..... ...+.........+++. .+..+.+....+. |..++..+|+.+..+
T Consensus 250 Glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~giav~-~~~ly~td~~~~~-V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 250 GLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITVF-EDSLYWTDWHTKS-INSANKFTGKNQEII 325 (386)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEECSSCSSEEEEEEE-TTEEEEEETTTTE-EEEEETTTCCSCEEE
T ss_pred eEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEEECCCCCceEEEEE-CCEEEEeeCCCCe-EEEEECCCCcceEEE
Confidence 7899999999988888889999999875332 22233334566788883 3444455455566 888887677665554
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.73 E-value=2e-05 Score=67.50 Aligned_cols=223 Identities=10% Similarity=0.024 Sum_probs=129.0
Q ss_pred CeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEee---cc--EEEEeecC
Q psy3710 53 GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLE---GL--IKVYTFIQ 127 (424)
Q Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~--i~v~~~~~ 127 (424)
....+++.++++.+++-. .++.|..||... +....+.....+..+++.+++.+++++ .. |..++..
T Consensus 33 ~pegia~~~~g~lyv~d~-------~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~- 103 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNH-------EVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS- 103 (306)
T ss_dssp CEEEEEECTTSCEEEEET-------TTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT-
T ss_pred CcceEEECCCCCEEEEeC-------CCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCC-
Confidence 456688888877444432 358999999764 455555556778999999998766663 13 5555653
Q ss_pred CCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCc---------ccccccCCeEEEEEccCCC
Q psy3710 128 CPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL---------DIAAHEAPLSCIALNQTGT 198 (424)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~ 198 (424)
+++....... ........++..+++..+++ ...++.|..+|...+...+. .....-.....+ +|+++
T Consensus 104 ~g~~~~~~~~-~~~~~~~g~~~~~~~~~~v~-d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~ 179 (306)
T 2p4o_A 104 DGTVETLLTL-PDAIFLNGITPLSDTQYLTA-DSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGN 179 (306)
T ss_dssp TSCEEEEEEC-TTCSCEEEEEESSSSEEEEE-ETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETT
T ss_pred CCeEEEEEeC-CCccccCcccccCCCcEEEE-ECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCC
Confidence 4443322222 11111223333444444443 55688999998764210110 000111234455 78887
Q ss_pred EEEEEe-cCCcEEEEEECCC-cce--eeEEe--cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCC-CeeeccCCCC
Q psy3710 199 RLATAS-YKGTLIRVFDTGS-GQK--LNELR--RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERP-PLDIAAHEAP 271 (424)
Q Consensus 199 ~l~~~~-~d~~~i~iwd~~~-~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~ 271 (424)
.|+.+. ..+. |..+++.. ++. ...+. .....+++++++. ++++....+.|.++|.. ++.. ...+...-..
T Consensus 180 ~lyv~d~~~~~-I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~ 256 (306)
T 2p4o_A 180 FLYVSNTEKML-LLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIG 256 (306)
T ss_dssp EEEEEETTTTE-EEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-EEEECBTTCCEEEECTT-CCEEEEECGGGTCTT
T ss_pred EEEEEeCCCCE-EEEEEeCCCCCCCccEEEeccCCCCCeEECCCCC-EEEEeCCCCeEEEECCC-CCEEEEeecccccCC
Confidence 766655 4566 99999864 321 11121 2345678888885 45556677899999975 3211 1122233356
Q ss_pred eEEEEEc---CCCCEEEEEeCCC
Q psy3710 272 LSCIALN---QTGTRLATASYKG 291 (424)
Q Consensus 272 v~~~~~~---~~~~~l~~~~~d~ 291 (424)
.++++|. |+++.|+.++..+
T Consensus 257 p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 257 STAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEEEEECCSTTTTTEEEEEECTT
T ss_pred ceEEEEecccCCCCEEEEECCCC
Confidence 8999998 8887777766544
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.68 E-value=8.6e-06 Score=65.78 Aligned_cols=186 Identities=12% Similarity=0.013 Sum_probs=120.8
Q ss_pred ccCC--ceEEEEECCCCCeeEeecCC---eEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeE
Q psy3710 8 TYKN--GLLYAGFNQDQGCFACGMED---GFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 8 ~h~~--~V~~~~~s~~g~~la~g~~~---~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 82 (424)
.|+. ....+.|++ +.++.+.+.. .|+.+|+++++........ .......+.+.++.+..+.. .++.+
T Consensus 16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~-~~~fgeGi~~~~~~ly~ltw------~~~~v 87 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVP-PPYFGAGIVAWRDRLIQLTW------RNHEG 87 (243)
T ss_dssp ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECC-TTCCEEEEEEETTEEEEEES------SSSEE
T ss_pred CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCC-CCcceeEEEEeCCEEEEEEe------eCCEE
Confidence 4553 456889987 4444444443 3999999999887666553 33334445556777766664 37999
Q ss_pred EEEECCCCcEEEEEeecCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCC---eeEEEeecCCCCeEE
Q psy3710 83 MIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPK---GLCVLCPNSNNSLLA 157 (424)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~ 157 (424)
.++|.++.+.+.++.....-..++... +.++.+ ++.|.++|.. +.+.+..++...++. .+..+.+. +|+..+
T Consensus 88 ~v~D~~tl~~~~ti~~~~~Gwglt~dg-~~L~vSdgs~~l~~iDp~-t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lya 164 (243)
T 3mbr_X 88 FVYDLATLTPRARFRYPGEGWALTSDD-SHLYMSDGTAVIRKLDPD-TLQQVGSIKVTAGGRPLDNLNELEWV-NGELLA 164 (243)
T ss_dssp EEEETTTTEEEEEEECSSCCCEEEECS-SCEEEECSSSEEEEECTT-TCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEEECCcCcEEEEEeCCCCceEEeeCC-CEEEEECCCCeEEEEeCC-CCeEEEEEEEccCCcccccceeeEEe-CCEEEE
Confidence 999999999999999765556666433 344445 5689999986 677777766543221 13344444 565554
Q ss_pred EeeccCCeEEEEeCCCCCCCCcccc-------------cccCCeEEEEEccCCCEEEEEecC
Q psy3710 158 FPGRKSGHVHLVDLADPERPPLDIA-------------AHEAPLSCIALNQTGTRLATASYK 206 (424)
Q Consensus 158 ~~~~~dg~i~i~d~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~l~~~~~d 206 (424)
. ...+..|.+.|..++ +....+. .-.+-.+.|+++|+++.|...+..
T Consensus 165 n-vw~s~~I~vIDp~tG-~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 165 N-VWLTSRIARIDPASG-KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp E-ETTTTEEEEECTTTC-BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred E-ECCCCeEEEEECCCC-CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 4 556779999999886 3333222 112356899999988777766644
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-05 Score=76.74 Aligned_cols=244 Identities=10% Similarity=0.010 Sum_probs=132.4
Q ss_pred ccCC-ceEEEEEC-CCCCeeEeecC-----Ce-EEEEeCCcC-cccccccccCCCeeeEEEeccCceEEEEeCCcCCCcC
Q psy3710 8 TYKN-GLLYAGFN-QDQGCFACGME-----DG-FRIYNCDPL-KEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYP 78 (424)
Q Consensus 8 ~h~~-~V~~~~~s-~~g~~la~g~~-----~~-i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~ 78 (424)
+|.- .+...+|| |||++||.+.+ .. |+++|++++ +.+.. .. ......+.|+|+++.++++..... ..
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~-~~~~~~~~WspDg~~l~y~~~d~~--~~ 245 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KV-SGTNGEIVWGPDHTSLFYVTKDET--LR 245 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CE-EEECSCCEECSSTTEEEEEEECTT--CC
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cc-cCceeeEEEecCCCEEEEEEECCC--CC
Confidence 3443 67889999 99999994422 22 999999988 63221 11 122456899999999988873210 00
Q ss_pred CCeEEEEECCCCcE--EEEEe--ecCCeEEEEecCCceEEEe------eccEEEEeecCCCcee--EEEeeCCCCCeeEE
Q psy3710 79 NNRVMIWDDLKKQV--VICLE--FNAPVKGVRLRRDKIVVVL------EGLIKVYTFIQCPQQL--HVFETNPNPKGLCV 146 (424)
Q Consensus 79 d~~i~iwd~~~~~~--~~~~~--~~~~v~~~~~~~~~~~~~~------~~~i~v~~~~~~~~~~--~~~~~~~~~~~~~~ 146 (424)
...|+++++.++.. ...+. .......+.|+||+..++. ...|.++|+....... ..+.... ......
T Consensus 246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~~s 324 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE-KGVRYD 324 (751)
T ss_dssp EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC-TTCCEE
T ss_pred CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC-CCceEE
Confidence 14788899877642 22222 2344667899999977664 3468888885321122 3332211 111233
Q ss_pred EeecCCCCeEEEeeccC----CeEEEEeCCCCCCCCcc-cccccC--CeEEEEEccCCCEEEEEecCCc-EEEEEEC---
Q psy3710 147 LCPNSNNSLLAFPGRKS----GHVHLVDLADPERPPLD-IAAHEA--PLSCIALNQTGTRLATASYKGT-LIRVFDT--- 215 (424)
Q Consensus 147 ~~~~~~~~~l~~~~~~d----g~i~i~d~~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~l~~~~~d~~-~i~iwd~--- 215 (424)
+.|+. +..|+.....+ ..|..+++.+. ..... +..+.. .+..+.+. .+..+++...++. .|.++++
T Consensus 325 ~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~ 401 (751)
T 2xe4_A 325 VQMHG-TSHLVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQ 401 (751)
T ss_dssp EEEET-TTEEEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTT
T ss_pred Eeeee-CCEEEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccc
Confidence 33333 55555434443 36777777642 12223 333433 34455554 2334455556664 1556665
Q ss_pred ----CCcceeeEE--ecceeeeee------cCCCCeEEEEeecC---CeEEEEeCCCCC
Q psy3710 216 ----GSGQKLNEL--RRGLCVLCP------NSNNSLLAFPGRKS---GHVHLVDLADPE 259 (424)
Q Consensus 216 ----~~~~~~~~~--~~~~~~~~~------~~~~~~~~~~~~~d---g~i~i~d~~~~~ 259 (424)
.+++....+ ........+ .+++..++++.+.. ..++.+|+.+++
T Consensus 402 ~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 402 DGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp TSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred cccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 343313333 222222233 44666666655443 467788877654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.65 E-value=0.00013 Score=64.81 Aligned_cols=225 Identities=9% Similarity=-0.017 Sum_probs=141.1
Q ss_pred CCeEEEEECCCCcEEEEEeecCCeEEEEecCC-ceEEEe---eccEEEEeecCCC--ceeEEEeeCCCCCeeEEEeecCC
Q psy3710 79 NNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD-KIVVVL---EGLIKVYTFIQCP--QQLHVFETNPNPKGLCVLCPNSN 152 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~---~~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 152 (424)
...|+..++........+.....+.+++|++. +.+..+ .+.|+.+++.... .....+.. ........+++.+.
T Consensus 91 ~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~-~~~~~p~glavD~~ 169 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWI 169 (400)
T ss_dssp TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC-SSCSCEEEEEEETT
T ss_pred cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe-CCCCCcccEEEEec
Confidence 47899999887766655556678899999974 444444 5678888875211 11222221 11233556777775
Q ss_pred CCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEec--CCcEEEEEECCCcceeeEEec---c
Q psy3710 153 NSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY--KGTLIRVFDTGSGQKLNELRR---G 227 (424)
Q Consensus 153 ~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~~i~iwd~~~~~~~~~~~~---~ 227 (424)
+..|+.+-...+.|.+.+++.. .....+...-.....|++.|.+..|+.... .+. |...++........... .
T Consensus 170 ~~~lY~~d~~~~~I~~~~~~g~-~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~-I~~~~~dG~~~~~~~~~~l~~ 247 (400)
T 3p5b_L 170 HSNIYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNGVDIYSLVTENIQW 247 (400)
T ss_dssp TTEEEEEETTTTEEEEECTTTC-SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCC-EEEEETTSCSCEEEECSSCSC
T ss_pred CCceEEEECCCCeEEEEeCCCC-ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCE-EEEEeCCCCccEEEEECCCCc
Confidence 6666664677889999998863 222223333445789999997666665542 367 89999865443333332 2
Q ss_pred eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeecc--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCcee
Q psy3710 228 LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAA--HEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL 305 (424)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~ 305 (424)
...+++++.++.++++-...+.|..+|+..... ...... .-.....+++. .+..+.+-...+. |..+|..+|+.+
T Consensus 248 P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~-V~~~~~~~G~~~ 324 (400)
T 3p5b_L 248 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA-IFSANRLTGSDV 324 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE-TTEEEEEESSSCS-EEEEESSSCCCC
T ss_pred eEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCe-EEEEEcCCCCce
Confidence 577899999999988777889999999876432 222221 23445677773 3344455555566 888887777766
Q ss_pred eeec
Q psy3710 306 NELR 309 (424)
Q Consensus 306 ~~~~ 309 (424)
..+.
T Consensus 325 ~~i~ 328 (400)
T 3p5b_L 325 NLLA 328 (400)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5553
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=3.4e-05 Score=66.57 Aligned_cols=199 Identities=15% Similarity=0.063 Sum_probs=121.8
Q ss_pred CeEEEEecCCce-EEEe--eccEEEEeecCCCceeEEEeeCCC------------------CCeeEEEeecC-CCCeEEE
Q psy3710 101 PVKGVRLRRDKI-VVVL--EGLIKVYTFIQCPQQLHVFETNPN------------------PKGLCVLCPNS-NNSLLAF 158 (424)
Q Consensus 101 ~v~~~~~~~~~~-~~~~--~~~i~v~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~-~~~~l~~ 158 (424)
...++++.+++. +.+. ++.|..|+.. .. .+..+..... ......+++.+ ++++++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~-~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v- 96 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGP-NS-GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI- 96 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCT-TT-CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE-
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCC-CC-ceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE-
Confidence 467788888875 4443 6788888864 32 2333321110 01356778887 555444
Q ss_pred eeccCCeEEEEeCCCCCCCCccccc-----ccCCeEEEEEcc-CCCEEEEEec-----------------CCcEEEEEEC
Q psy3710 159 PGRKSGHVHLVDLADPERPPLDIAA-----HEAPLSCIALNQ-TGTRLATASY-----------------KGTLIRVFDT 215 (424)
Q Consensus 159 ~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~-----------------d~~~i~iwd~ 215 (424)
+...+.|..+|..++ . ...+.. .......+++.+ +|+..++-.. ++. |..+|.
T Consensus 97 -~d~~~~i~~~d~~~g-~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~-v~~~d~ 172 (322)
T 2fp8_A 97 -VDCYYHLSVVGSEGG-H-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR-LIKYDP 172 (322)
T ss_dssp -EETTTEEEEECTTCE-E-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE-EEEEET
T ss_pred -EECCCCEEEEeCCCC-E-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce-EEEEeC
Confidence 444455888887653 1 222211 123468899999 8977666432 366 888998
Q ss_pred CCcceeeEEe--cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCC-CCeeeccCCCCeEEEEEcCCCCEEEEEeC---
Q psy3710 216 GSGQKLNELR--RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER-PPLDIAAHEAPLSCIALNQTGTRLATASY--- 289 (424)
Q Consensus 216 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--- 289 (424)
.+++...... .....+++++++..++++-...+.|+.|++..... ....+....+ ...++++++|++.++...
T Consensus 173 ~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~ 251 (322)
T 2fp8_A 173 STKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELD 251 (322)
T ss_dssp TTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETT
T ss_pred CCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccc
Confidence 7665432222 23456889999998888777789999999885321 1112211223 788999999987666544
Q ss_pred -------CCcEEEEEECCCCceeeeec
Q psy3710 290 -------KGTLIRVFDTGSGQKLNELR 309 (424)
Q Consensus 290 -------d~~~i~iwd~~~~~~~~~~~ 309 (424)
.+. |..+|.. ++.+..+.
T Consensus 252 ~~~~~~~~~~-v~~~d~~-G~~~~~~~ 276 (322)
T 2fp8_A 252 GNMHGRVDPK-GIKFDEF-GNILEVIP 276 (322)
T ss_dssp SSTTSCEEEE-EEEECTT-SCEEEEEE
T ss_pred ccccCCCccE-EEEECCC-CCEEEEEE
Confidence 355 7777764 66555543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.62 E-value=8.1e-05 Score=63.68 Aligned_cols=221 Identities=10% Similarity=0.076 Sum_probs=129.7
Q ss_pred CceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC
Q psy3710 11 NGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK 89 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~ 89 (424)
.....++|+++|+++++...++ |..||.+.... ..... .+....+++.++++.+++..+. ....|..++..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-~~~~~-~~~p~gia~~~dG~l~vad~~~-----~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-IHATV-EGKVSGLAFTSNGDLVATGWNA-----DSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-EEEEC-SSEEEEEEECTTSCEEEEEECT-----TSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE-EEEeC-CCCceeEEEcCCCcEEEEeccC-----CcceEEEEcCCC
Confidence 4567899999998777765555 99998765322 21222 3457788999998855544321 013577778778
Q ss_pred CcEEEEEee--cCCeEEEEecCCceEEEe---eccEEEEeecCCCc-eeEEEee-------CCCCCeeEEEeecCCCCeE
Q psy3710 90 KQVVICLEF--NAPVKGVRLRRDKIVVVL---EGLIKVYTFIQCPQ-QLHVFET-------NPNPKGLCVLCPNSNNSLL 156 (424)
Q Consensus 90 ~~~~~~~~~--~~~v~~~~~~~~~~~~~~---~~~i~v~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~l 156 (424)
++....... ......++..+++..+++ .+.|.++|.. ..+ .+..... .........+ +++++.|
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~-~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~l 181 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV-QPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFL 181 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT-TTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEE
T ss_pred CeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCC-CCcEeEEEECCccccccccCCCCcCCCc--CcCCCEE
Confidence 876543332 223345555566655555 4677777753 221 1111110 0111123334 6788877
Q ss_pred EEeeccCCeEEEEeCCCCCCC--CcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceee--EEec---cee
Q psy3710 157 AFPGRKSGHVHLVDLADPERP--PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN--ELRR---GLC 229 (424)
Q Consensus 157 ~~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~~~---~~~ 229 (424)
.++-...+.|..+++...... ...+. .......+++.++|+++++....+. |.++|.. ++... .+.. ...
T Consensus 182 yv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~-V~~~~~~-G~~~~~~~~~~~~~~p~ 258 (306)
T 2p4o_A 182 YVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNS-VVRIAPD-RSTTIIAQAEQGVIGST 258 (306)
T ss_dssp EEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCC-EEEECTT-CCEEEEECGGGTCTTEE
T ss_pred EEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCe-EEEECCC-CCEEEEeecccccCCce
Confidence 775777889999998752111 11111 1134577899999987777666778 9999975 55422 2222 245
Q ss_pred eeeec---CCCCeEEEEe
Q psy3710 230 VLCPN---SNNSLLAFPG 244 (424)
Q Consensus 230 ~~~~~---~~~~~~~~~~ 244 (424)
.+++. +++..++++.
T Consensus 259 ~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 259 AVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp EEEECCSTTTTTEEEEEE
T ss_pred EEEEecccCCCCEEEEEC
Confidence 66776 6666666644
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.60 E-value=0.00015 Score=62.20 Aligned_cols=223 Identities=12% Similarity=0.057 Sum_probs=136.5
Q ss_pred CCeEEEEECCCCc--EEEEEeecCCeEEEEecCC-ceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCC
Q psy3710 79 NNRVMIWDDLKKQ--VVICLEFNAPVKGVRLRRD-KIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSN 152 (424)
Q Consensus 79 d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~-~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (424)
...|+..++.... ....+.....+.+++|.+. +.+..+ .+.|..+++.........+.... .....+++.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l--~~p~glavd~~ 89 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL--LSPDGLACDWL 89 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECC--SCCCEEEEETT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCC--CCccEEEEEcC
Confidence 4789999987663 2223333445778899875 444444 56888888753221122222211 11334566665
Q ss_pred CCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEec--CCcEEEEEECCCcceeeEEecc---
Q psy3710 153 NSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY--KGTLIRVFDTGSGQKLNELRRG--- 227 (424)
Q Consensus 153 ~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~~i~iwd~~~~~~~~~~~~~--- 227 (424)
+..|+.+-...+.|.+++++.. ...............+++.|.+..|+.+.. .+. |...++............
T Consensus 90 ~g~ly~~d~~~~~I~~~~~dG~-~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~-I~r~~~dG~~~~~~~~~~l~~ 167 (318)
T 3sov_A 90 GEKLYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPK-IERAGMDGSSRFIIINSEIYW 167 (318)
T ss_dssp TTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCE-EEEEETTSCSCEEEECSSCSC
T ss_pred CCeEEEEECCCCEEEEEECCCC-cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCE-EEEEEcCCCCeEEEEECCCCC
Confidence 6666654667789999998763 222222233456789999997666665552 466 888888643322222222
Q ss_pred eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeee
Q psy3710 228 LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE 307 (424)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~ 307 (424)
...++++++++.+.++-...+.|..+|+..... .............+++..+ ..+.+-...+. |..++..+|+....
T Consensus 168 Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~glav~~~-~lywtd~~~~~-V~~~~~~~G~~~~~ 244 (318)
T 3sov_A 168 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGSLPHPFALTLFED-ILYWTDWSTHS-ILACNKYTGEGLRE 244 (318)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSCCSCEEEEEEETT-EEEEEETTTTE-EEEEETTTCCSCEE
T ss_pred ccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEecCCCCCceEEEEeCC-EEEEEecCCCe-EEEEECCCCCceEE
Confidence 567899999999998888889999999875332 2222234455677887533 34444445566 88888877776554
Q ss_pred e
Q psy3710 308 L 308 (424)
Q Consensus 308 ~ 308 (424)
+
T Consensus 245 i 245 (318)
T 3sov_A 245 I 245 (318)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.7e-05 Score=75.66 Aligned_cols=255 Identities=12% Similarity=0.039 Sum_probs=136.7
Q ss_pred eEEEEecC-CceEEEee--------------ccEEEEeecCCCc--eeEEEeeCCCCCeeEEEeecCCCCeEEEeec-cC
Q psy3710 102 VKGVRLRR-DKIVVVLE--------------GLIKVYTFIQCPQ--QLHVFETNPNPKGLCVLCPNSNNSLLAFPGR-KS 163 (424)
Q Consensus 102 v~~~~~~~-~~~~~~~~--------------~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~d 163 (424)
-...++.+ ++.+++.. ..+.+||.. +.+ .+..+.... .....+.++..+++.+++ |+ .+
T Consensus 188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~-t~~w~~~~~~~~~~-~~~~~~~~~~~~g~lyv~-GG~~~ 264 (656)
T 1k3i_A 188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPS-TGIVSDRTVTVTKH-DMFCPGISMDGNGQIVVT-GGNDA 264 (656)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTT-TCCBCCCEEEECSC-CCSSCEEEECTTSCEEEE-CSSST
T ss_pred ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCC-CCcEEeCcccCCCC-CCccccccCCCCCCEEEe-CCCCC
Confidence 34566666 66655541 157888875 332 222222211 112234556678888888 66 56
Q ss_pred CeEEEEeCCCCCC-CCcccccccCCeEEEEEccCCCEEEEEe-cC-----CcEEEEEECCCcceeeE-------Eeccee
Q psy3710 164 GHVHLVDLADPER-PPLDIAAHEAPLSCIALNQTGTRLATAS-YK-----GTLIRVFDTGSGQKLNE-------LRRGLC 229 (424)
Q Consensus 164 g~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----~~~i~iwd~~~~~~~~~-------~~~~~~ 229 (424)
..+.+||..+..- ....+.. ...-.+++..++++.++.|+ .+ .. +.+||..+++-... +.....
T Consensus 265 ~~v~~yd~~t~~W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~-~e~yd~~t~~W~~~~~~~~~p~~~~~~ 342 (656)
T 1k3i_A 265 KKTSLYDSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKN-GEVYSPSSKTWTSLPNAKVNPMLTADK 342 (656)
T ss_dssp TCEEEEEGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCC-EEEEETTTTEEEEETTSCSGGGCCCCT
T ss_pred CceEEecCcCCceeECCCCCc-cccccceEEecCCeEEEEeCcccCCccccc-ceEeCCCCCcceeCCCccccccccccc
Confidence 6899999876410 0011111 11123556667899999988 33 46 89999987653321 000001
Q ss_pred eeeecCCCCeEEEEeecC---------CeEEEEeCCCCCCCCeeeccC---------CCCeEEEEEcC-CCCEEEEEeCC
Q psy3710 230 VLCPNSNNSLLAFPGRKS---------GHVHLVDLADPERPPLDIAAH---------EAPLSCIALNQ-TGTRLATASYK 290 (424)
Q Consensus 230 ~~~~~~~~~~~~~~~~~d---------g~i~i~d~~~~~~~~~~~~~~---------~~~v~~~~~~~-~~~~l~~~~~d 290 (424)
...+..++..+++ |+.+ ..+..||..+.... .....+ ...-.++.|.. ++++++.|+.+
T Consensus 343 ~~~~~~~~~iyv~-Gg~~g~~~~~~~~~~v~~yd~~~~~w~-~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~ 420 (656)
T 1k3i_A 343 QGLYRSDNHAWLF-GWKKGSVFQAGPSTAMNWYYTSGSGDV-KSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSP 420 (656)
T ss_dssp TGGGTTTCSCCEE-ECGGGCEEECCSSSEEEEEECSTTCEE-EEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBS
T ss_pred cceeecCCceEEE-ECCCCcEEEecCccceeeeecCCccee-ecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCC
Confidence 1122234444444 5443 45678888765421 111111 11224445543 77888888754
Q ss_pred C-----------cEEEEEECCCCceeee---------------eccCCcEEEEEeCC-----------CcEEEEEccccc
Q psy3710 291 G-----------TLIRVFDTGSGQKLNE---------------LRRDSSYLCVSSDH-----------GTVHVFSVDEAQ 333 (424)
Q Consensus 291 ~-----------~~i~iwd~~~~~~~~~---------------~~~~~~~l~~~~~d-----------~~i~iw~~~~~~ 333 (424)
+ . |.+||..+.+.... .-+++++++.|+.+ ..+.+||..+.+
T Consensus 421 ~~~~~~~~~~~~~-v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 421 DYQDSDATTNAHI-ITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp SSSSSBCCCCEEE-EECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred CCCCCCcCCcceE-EEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence 2 4 78888876543221 22578888888754 457788876643
Q ss_pred cccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEec
Q psy3710 334 KINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICA 384 (424)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 384 (424)
-. .... ...+......+.+.||++.+++|+.
T Consensus 500 W~-~~~~-------------------~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 500 FY-KQNP-------------------NSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EE-ECCC-------------------CSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ee-ecCC-------------------CCCccccccHhhcCCCcEEEecCCC
Confidence 21 1110 0011122334556789999999885
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.53 E-value=0.0012 Score=66.53 Aligned_cols=351 Identities=9% Similarity=0.095 Sum_probs=175.7
Q ss_pred CeEEEEeCCcCcccccccccC-CCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEE--EEEeecCCeEEEEe
Q psy3710 31 DGFRIYNCDPLKEKERQDFTD-GGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVV--ICLEFNAPVKGVRL 107 (424)
Q Consensus 31 ~~i~iw~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~ 107 (424)
.+|++.+.+....+.....+. ..|...+ -.+..++++. .+.+.++++..++.. .....+..|.|+++
T Consensus 492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As--~n~~~vvva~--------g~~l~~fel~~~~L~~~~~~~l~~evscl~i 561 (1158)
T 3ei3_A 492 ASVRLVSQEPKALVSEWKEPQAKNISVAS--CNSSQVVVAV--------GRALYYLQIHPQELRQISHTEMEHEVACLDI 561 (1158)
T ss_dssp SCEEEEESSSCCEEEEECCTTCCCCCEEE--ECSSEEEEEE--------TTEEEEEEEETTEEEEEEEEECSSCEEEEEC
T ss_pred CEEEEEECCCCeEEEEEECCCCCEEEEEE--eCCCEEEEEE--------CCEEEEEEeeCCceeeecccCCCCceEEEEe
Confidence 345666654433332222222 2343333 3345666665 257778877655432 23335789999999
Q ss_pred cCCc--------eEEEe--eccEEEEeecCCCceeEEEeeCC--CCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCC
Q psy3710 108 RRDK--------IVVVL--EGLIKVYTFIQCPQQLHVFETNP--NPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE 175 (424)
Q Consensus 108 ~~~~--------~~~~~--~~~i~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~ 175 (424)
.|.. ..++. |++++|+++. ..+.+....... .+..+.-..+ ....+|.+ |-.||.+.-+.++...
T Consensus 562 ~~~~~~~~~s~~~aVg~~~d~tv~I~sL~-~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~i-gl~dG~l~~~~~d~~t 638 (1158)
T 3ei3_A 562 TPLGDSNGLSPLCAIGLWTDISARILKLP-SFELLHKEMLGGEIIPRSILMTTF-ESSHYLLC-ALGDGALFYFGLNIET 638 (1158)
T ss_dssp CCCSSSTTCCSEEEEEETTTTEEEEEETT-TCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEE-EETTSEEEEEEECTTT
T ss_pred ecCCCCcccccEEEEEECCCCEEEEEECC-CCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEE-EeCCCeEEEEEEcCCC
Confidence 7531 23333 8899999996 555554433321 2223333333 23456666 9999998777655321
Q ss_pred CCCc----ccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeE-Eec-ce-eeeeecCC--CCeEEEEeec
Q psy3710 176 RPPL----DIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNE-LRR-GL-CVLCPNSN--NSLLAFPGRK 246 (424)
Q Consensus 176 ~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~-~~~-~~-~~~~~~~~--~~~~~~~~~~ 246 (424)
..+. .+-+ ..++.-..+...|..-+.+..+.. ..++--+ ++.... +.. .+ ....|+.. ...++ +..
T Consensus 639 g~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp-~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v--~~~ 713 (1158)
T 3ei3_A 639 GLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRP-TVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLA--LAN 713 (1158)
T ss_dssp CCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSC-EEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEE--EEC
T ss_pred CccccceeEEcC-CCceEEEEEeeCCceeEEEECCCC-EEEEEcC-CceEEeccChHHhceEeccCcccCCCcEE--EEc
Confidence 1111 1112 345544444444443333333444 4444433 322211 111 12 12223222 22333 234
Q ss_pred CCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCC------------------------------------
Q psy3710 247 SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK------------------------------------ 290 (424)
Q Consensus 247 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------------------------------ 290 (424)
++.++|..+..........-.-...+..++++|+.+.++.+..+
T Consensus 714 ~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1158)
T 3ei3_A 714 NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSST 793 (1158)
T ss_dssp SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----
T ss_pred CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccc
Confidence 55688888765432111111334567888888876654443211
Q ss_pred -------------CcEEEEEECCCCceeeeec----------------c-CCcEEEEEe----------CCCcEEEEEcc
Q psy3710 291 -------------GTLIRVFDTGSGQKLNELR----------------R-DSSYLCVSS----------DHGTVHVFSVD 330 (424)
Q Consensus 291 -------------~~~i~iwd~~~~~~~~~~~----------------~-~~~~l~~~~----------~d~~i~iw~~~ 330 (424)
+. |++.|..+.+.+..+. . ...+++.|+ ..|.|++|++.
T Consensus 794 ~~~~~~~g~~~~~s~-i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~ 872 (1158)
T 3ei3_A 794 APHETSFGEEVEVHN-LLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS 872 (1158)
T ss_dssp ------CCCEEEEEE-EEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE
T ss_pred cCchhhcCCceeeEE-EEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE
Confidence 12 7788887777655432 1 246777776 24778888886
Q ss_pred ccccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEeccCcEEEEEecCCcceeee--eehh--
Q psy3710 331 EAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECWRD--VYIQ-- 406 (424)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~~~~~~~~~~~~~~--~~~~-- 406 (424)
.+ ++.. +++... .++++.++-- +| +|++|- ...|++|++.....+... .+..
T Consensus 873 ~~-kL~l-------------------v~~~~v-~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~ 928 (1158)
T 3ei3_A 873 DG-KLQT-------------------VAEKEV-KGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIM 928 (1158)
T ss_dssp TT-EEEE-------------------EEEEEE-SSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSC
T ss_pred CC-EEEE-------------------EEEEEc-CCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEE
Confidence 32 1111 111222 3444443321 45 555443 579999999855433311 1211
Q ss_pred hheecCCCceeeEEEeeC
Q psy3710 407 FLEMTNDSNLLSCIEILE 424 (424)
Q Consensus 407 ~~~~~~d~~~l~~~~~~~ 424 (424)
.+.+...+++++.+|+.|
T Consensus 929 ~~~l~~~~~~I~vgD~~~ 946 (1158)
T 3ei3_A 929 ALYLKTKGDFILVGDLMR 946 (1158)
T ss_dssp EEEEEEETTEEEEEESSB
T ss_pred EEEEeccCCEEEEEEhhh
Confidence 124445688899888653
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.52 E-value=0.00029 Score=60.40 Aligned_cols=219 Identities=8% Similarity=0.038 Sum_probs=130.6
Q ss_pred eEEEe-eccEEEEeecCCC-ceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeE
Q psy3710 112 IVVVL-EGLIKVYTFIQCP-QQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLS 189 (424)
Q Consensus 112 ~~~~~-~~~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 189 (424)
.++++ ...|+.+++.... .....+... ....++.|++.+..|..+-...+.|..+++.........+...-....
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~---~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~ 82 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGGL---EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD 82 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEEE---EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecCC---CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc
Confidence 34444 6789999986332 111222211 235678888876667664677889999998865222222222234567
Q ss_pred EEEEccCCCEEE-EEecCCcEEEEEECCCcceeeEEec---ceeeeeecCCCCeEEEEee-cCCeEEEEeCCCCCCCCee
Q psy3710 190 CIALNQTGTRLA-TASYKGTLIRVFDTGSGQKLNELRR---GLCVLCPNSNNSLLAFPGR-KSGHVHLVDLADPERPPLD 264 (424)
Q Consensus 190 ~~~~~~~~~~l~-~~~~d~~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~~~~ 264 (424)
.+++.+.+..|+ +-...+. |.++++........+.. ....+++.|.+..++++-. ..+.|..+++..... ...
T Consensus 83 glavd~~~g~ly~~d~~~~~-I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~ 160 (318)
T 3sov_A 83 GLACDWLGEKLYWTDSETNR-IEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FII 160 (318)
T ss_dssp EEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EEE
T ss_pred EEEEEcCCCeEEEEECCCCE-EEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EEE
Confidence 899987555554 4445667 99999865433222222 2567888888888877553 368899998875332 122
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeeec-----c------CCcEEEEEeCCCcEEEEEccccc
Q psy3710 265 IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-----R------DSSYLCVSSDHGTVHVFSVDEAQ 333 (424)
Q Consensus 265 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-----~------~~~~l~~~~~d~~i~iw~~~~~~ 333 (424)
....-...+.|+++|++..|+.+......|..+|+........+. | .+.++.+-...+.|..++..+|+
T Consensus 161 ~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 161 INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred EECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCC
Confidence 223334678999999777777666543339999986432221111 1 23344444456677777776665
Q ss_pred cc
Q psy3710 334 KI 335 (424)
Q Consensus 334 ~~ 335 (424)
..
T Consensus 241 ~~ 242 (318)
T 3sov_A 241 GL 242 (318)
T ss_dssp SC
T ss_pred ce
Confidence 43
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.47 E-value=5.3e-05 Score=73.46 Aligned_cols=196 Identities=9% Similarity=0.056 Sum_probs=113.2
Q ss_pred CeeeEEEe-ccCceEEEEeCCcCCCcCCCeEEEEECCCC-cEEEEEeecCCeEEEEecCCceEEEe---e-----ccEEE
Q psy3710 53 GLGHVEML-FRCNYLALVGGGTHPKYPNNRVMIWDDLKK-QVVICLEFNAPVKGVRLRRDKIVVVL---E-----GLIKV 122 (424)
Q Consensus 53 ~i~~~~~~-~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~---~-----~~i~v 122 (424)
.+....|+ |++++++.+..... ....+|+++|+.++ +.+.. ........+.|+||+..++. + ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G--~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSG--NEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSS--SSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCC--CceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 56778999 99999987764210 01246999999998 63211 01112346889999855543 2 35777
Q ss_pred EeecCCCc--eeEEEeeCCCCCeeEEEeecCCCCeEEEeecc--CCeEEEEeCCCCCCCC--ccc-ccccCCeEEEEEcc
Q psy3710 123 YTFIQCPQ--QLHVFETNPNPKGLCVLCPNSNNSLLAFPGRK--SGHVHLVDLADPERPP--LDI-AAHEAPLSCIALNQ 195 (424)
Q Consensus 123 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--dg~i~i~d~~~~~~~~--~~~-~~~~~~v~~~~~~~ 195 (424)
+++. +.+ ....+..... .....+.++||+++|+.+... ...|.++|+.++.... ..+ ........++.|+.
T Consensus 252 ~~lg-t~~~~~~lv~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~ 329 (751)
T 2xe4_A 252 HVMG-KLQSEDVCLYEEHNP-LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG 329 (751)
T ss_dssp EETT-SCGGGCEEEEECCCT-TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred EECC-CCchhcEEEEecCCC-ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee
Confidence 7775 332 1223332222 235577899999999874432 4568888988652222 323 33445556666554
Q ss_pred CCCEEEEEe-cC----CcEEEEEECCCc-ceee-EEec--ceeeeeecCCCCeEEEEeecCCe--EEEEeC
Q psy3710 196 TGTRLATAS-YK----GTLIRVFDTGSG-QKLN-ELRR--GLCVLCPNSNNSLLAFPGRKSGH--VHLVDL 255 (424)
Q Consensus 196 ~~~~l~~~~-~d----~~~i~iwd~~~~-~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~dg~--i~i~d~ 255 (424)
|+.|+..+ .+ .. |..+|+.++ +... .+.. ......+.+.+..++++...++. |+++|+
T Consensus 330 -g~~l~~~t~~~~a~~~~-L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 330 -TSHLVILTNEGGAVNHK-LLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp -TTEEEEEECTTTCTTCE-EEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred -CCEEEEEeCCCCCCCcE-EEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 55554443 33 24 777787652 2111 2222 22333455567788888888886 555665
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.47 E-value=0.00015 Score=65.15 Aligned_cols=150 Identities=13% Similarity=0.010 Sum_probs=90.3
Q ss_pred eeeEEEec-cCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCce-EEEeec-------cEEEEe
Q psy3710 54 LGHVEMLF-RCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKI-VVVLEG-------LIKVYT 124 (424)
Q Consensus 54 i~~~~~~~-~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-------~i~v~~ 124 (424)
...+++.| +...|.++.. .+.|+.+|+.++..............+++++++. +++++. .+..++
T Consensus 139 P~~lavdp~~~g~Lyv~d~-------~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGE-------QHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCEEEEETTEEEEEEEEEB-------TEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred CCEEEECCCCCCeEEEEeC-------CCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence 35678887 4566666652 2789999987766554444556789999999986 444532 233344
Q ss_pred ecCCCceeEEEeeCCCCCeeEEEeecC-CCCeEEEeeccCCeEEEEeCCCCCCCCcccc-cccCCeEEEEEccCCCEEEE
Q psy3710 125 FIQCPQQLHVFETNPNPKGLCVLCPNS-NNSLLAFPGRKSGHVHLVDLADPERPPLDIA-AHEAPLSCIALNQTGTRLAT 202 (424)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~ 202 (424)
..........+.....+ ..++++| ++.++++ -..++.|..++.... ....... ........++|+|+|++|+.
T Consensus 212 ~~g~~~~~~~l~~~~~p---~giavdp~~g~lyv~-d~~~~~V~~~~~~~~-~~~~~~~~~~~~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 212 RESGFKVITELTKGQNC---NGAETHPINGELYFN-SWNAGQVFRYDFTTQ-ETTPLFTIQDSGWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp GGGTSCSEEEEEECSSC---CCEEECTTTCCEEEE-ETTTTEEEEEETTTT-EEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred CCCceeeeeeeccCCCc---eEEEEeCCCCEEEEE-ECCCCEEEEEECCCC-cEEEEEEcCCCCcceeEEEcCCCCEEEE
Confidence 32111211333333333 3456788 5555544 667889999998764 2111111 11234678999999996655
Q ss_pred Ee-cCCcEEEEEECC
Q psy3710 203 AS-YKGTLIRVFDTG 216 (424)
Q Consensus 203 ~~-~d~~~i~iwd~~ 216 (424)
+. ..+. |..++..
T Consensus 287 ~d~~~~~-I~~~~~d 300 (430)
T 3tc9_A 287 VVVNQHY-ILRSDYD 300 (430)
T ss_dssp EETTTTE-EEEEEEE
T ss_pred EECCCCE-EEEEeCC
Confidence 54 4566 8887764
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2.4e-05 Score=74.70 Aligned_cols=263 Identities=10% Similarity=-0.033 Sum_probs=137.9
Q ss_pred EEEECC-CCCeeEeecCC------------eEEEEeCCcCcccccccc---cCCCeeeEEEeccCceEEEEeCCcCCCcC
Q psy3710 15 YAGFNQ-DQGCFACGMED------------GFRIYNCDPLKEKERQDF---TDGGLGHVEMLFRCNYLALVGGGTHPKYP 78 (424)
Q Consensus 15 ~~~~s~-~g~~la~g~~~------------~i~iw~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~~~~~~~~ 78 (424)
++++.| +|+.++.|+.+ .+.+||..+.+....... +.......++..++..+++.+ . .
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG-~-----~ 263 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGG-N-----D 263 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECS-S-----S
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCC-C-----C
Confidence 456777 88888876431 278999887765332222 122222355666666554444 2 2
Q ss_pred CCeEEEEECCCCcEEEEEee--cCCeEEEEecCCceEEEee---------ccEEEEeecCCCceeEEEeeC---CCCCee
Q psy3710 79 NNRVMIWDDLKKQVVICLEF--NAPVKGVRLRRDKIVVVLE---------GLIKVYTFIQCPQQLHVFETN---PNPKGL 144 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~---------~~i~v~~~~~~~~~~~~~~~~---~~~~~~ 144 (424)
+..+.+||..+++-...-.. ...-.++...+++.+++.. ..+.+||.. +.+ ...+... ..+...
T Consensus 264 ~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~-t~~-W~~~~~~~~~p~~~~~ 341 (656)
T 1k3i_A 264 AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS-SKT-WTSLPNAKVNPMLTAD 341 (656)
T ss_dssp TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT-TTE-EEEETTSCSGGGCCCC
T ss_pred CCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC-CCc-ceeCCCcccccccccc
Confidence 46899999987755433221 2222345566666555542 468899975 332 2222100 000000
Q ss_pred EEEeecCCCCeEEEeeccCC---------eEEEEeCCCCCCCCccccccc---------CCeEEEEEcc-CCCEEEEEec
Q psy3710 145 CVLCPNSNNSLLAFPGRKSG---------HVHLVDLADPERPPLDIAAHE---------APLSCIALNQ-TGTRLATASY 205 (424)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~---------~~v~~~~~~~-~~~~l~~~~~ 205 (424)
....+..++..+++ |+.+| .+..||..+. ........+. ..-.++.|.. +++.++.|+.
T Consensus 342 ~~~~~~~~~~iyv~-Gg~~g~~~~~~~~~~v~~yd~~~~-~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~ 419 (656)
T 1k3i_A 342 KQGLYRSDNHAWLF-GWKKGSVFQAGPSTAMNWYYTSGS-GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS 419 (656)
T ss_dssp TTGGGTTTCSCCEE-ECGGGCEEECCSSSEEEEEECSTT-CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred ccceeecCCceEEE-ECCCCcEEEecCccceeeeecCCc-ceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCC
Confidence 00122345555555 65544 4677887764 2111111111 1223444433 6777888875
Q ss_pred CC-----------cEEEEEECCCcceeeEE----ecc--eeeeeecCCCCeEEEEeecC-----------CeEEEEeCCC
Q psy3710 206 KG-----------TLIRVFDTGSGQKLNEL----RRG--LCVLCPNSNNSLLAFPGRKS-----------GHVHLVDLAD 257 (424)
Q Consensus 206 d~-----------~~i~iwd~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~d-----------g~i~i~d~~~ 257 (424)
++ . +.+||..+.+-.... +.+ ....+..+++..+++ |+.+ ..+.+||..+
T Consensus 420 ~~~~~~~~~~~~~~-v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~-GG~~~~~~~~~~~~~~~v~~ydp~t 497 (656)
T 1k3i_A 420 PDYQDSDATTNAHI-ITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFIT-GGQRRGIPFEDSTPVFTPEIYVPEQ 497 (656)
T ss_dssp SSSSSSBCCCCEEE-EECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEE-CCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred CCCCCCCcCCcceE-EEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEE-CCcccCcCcCCCCcccceEEEcCCC
Confidence 42 5 788888776543322 111 233455677777776 5432 5689999876
Q ss_pred CCCC-CeeeccCCCCeEEEEEcCCCCEEEEEeC
Q psy3710 258 PERP-PLDIAAHEAPLSCIALNQTGTRLATASY 289 (424)
Q Consensus 258 ~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 289 (424)
.+-. ...+........+..+.|+|+.++.|+.
T Consensus 498 ~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 498 DTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp TEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 5411 1111112222234556789999999885
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00054 Score=58.78 Aligned_cols=221 Identities=8% Similarity=-0.033 Sum_probs=133.1
Q ss_pred eeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC---CcEEEE-Ee-e
Q psy3710 24 CFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK---KQVVIC-LE-F 98 (424)
Q Consensus 24 ~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~---~~~~~~-~~-~ 98 (424)
+|+.+..+.|+..++++.+...... .......+.|.+.++.+..+... .+.|..+++.. +..... +. .
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~------~~~I~~~~~~g~~~~~~~~~~~~~~ 75 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDTVISRD 75 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETT------TTEEEEEEC--------CEEEECSS
T ss_pred EEEEECCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECC------CCcEEEEECCCCCCCcccEEEEeCC
Confidence 5666666679999988765433222 24456778898888888777653 58999999865 122222 22 1
Q ss_pred cCCeEEEEecC-CceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccC-CeEEEEeCCC
Q psy3710 99 NAPVKGVRLRR-DKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKS-GHVHLVDLAD 173 (424)
Q Consensus 99 ~~~v~~~~~~~-~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d-g~i~i~d~~~ 173 (424)
-..+..+++.+ ++.+..+ .+.|.++++. +.....+... .......++++|.+..|+.+.... +.|...+++.
T Consensus 76 ~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~--g~~~~~~~~~-~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG 152 (316)
T 1ijq_A 76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 152 (316)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEEEEEEC-TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCCcCEEEEeecCCeEEEEECCCCEEEEEeCC--CCceEEEEEC-CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence 24567888875 4444444 5689999875 3333333221 112356778888777776634333 7888888865
Q ss_pred CCCCCccc-ccccCCeEEEEEccCCCEEEEEec-CCcEEEEEECCCcceeeEEe-----cceeeeeecCCCCeEEEEeec
Q psy3710 174 PERPPLDI-AAHEAPLSCIALNQTGTRLATASY-KGTLIRVFDTGSGQKLNELR-----RGLCVLCPNSNNSLLAFPGRK 246 (424)
Q Consensus 174 ~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-d~~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 246 (424)
. ....+ ...-.....++++|++..|+.+.. .+. |..+|+.......... .+...+++. +..++++...
T Consensus 153 ~--~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~-I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~ 227 (316)
T 1ijq_A 153 V--DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDII 227 (316)
T ss_dssp C--CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETT
T ss_pred C--CeEEEEECCCCCceEEEEeccCCEEEEEECCCCe-EEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEEEECC
Confidence 2 22222 222345789999998777766654 456 9999986433222112 123445553 4667776777
Q ss_pred CCeEEEEeCCCCC
Q psy3710 247 SGHVHLVDLADPE 259 (424)
Q Consensus 247 dg~i~i~d~~~~~ 259 (424)
.+.|..++..+++
T Consensus 228 ~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 228 NEAIFSANRLTGS 240 (316)
T ss_dssp TTEEEEEETTTCC
T ss_pred CCeEEEEeCCCCc
Confidence 7888888876654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00073 Score=60.06 Aligned_cols=224 Identities=8% Similarity=-0.040 Sum_probs=136.0
Q ss_pred CeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCC----cEEEEEe-
Q psy3710 23 GCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKK----QVVICLE- 97 (424)
Q Consensus 23 ~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~----~~~~~~~- 97 (424)
.+|..+....|+..+++......... ....+..++|.+..+.+..+... .+.|+.+++... .....+.
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~------~~~I~~~~~~g~~~~~~~~~~~~~ 156 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDTVISR 156 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETT------TTEEEEEEC------CCCEEEECS
T ss_pred ceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecC------CCeEEEEEcccCCCCCcceEEEeC
Confidence 45666666679888887654432222 24567789999888888777653 588999988652 2222222
Q ss_pred ecCCeEEEEecC-CceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeec-cCCeEEEEeCC
Q psy3710 98 FNAPVKGVRLRR-DKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGR-KSGHVHLVDLA 172 (424)
Q Consensus 98 ~~~~v~~~~~~~-~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~dg~i~i~d~~ 172 (424)
.......+++.+ .+.+..+ .+.|.+.+++ +.....+... .......++++|.+..|+.+-. ..+.|...+++
T Consensus 157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~--g~~~~~l~~~-~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d 233 (400)
T 3p5b_L 157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 233 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEECTT--TCSEEEEEEC-SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred CCCCcccEEEEecCCceEEEECCCCeEEEEeCC--CCceEEEEeC-CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence 345678888886 4444444 4678888875 3323322221 1223567788887777776332 24788888887
Q ss_pred CCCCCCcccccccCCeEEEEEccCCCEEEEEec-CCcEEEEEECCCcceeeEEec-----ceeeeeecCCCCeEEEEeec
Q psy3710 173 DPERPPLDIAAHEAPLSCIALNQTGTRLATASY-KGTLIRVFDTGSGQKLNELRR-----GLCVLCPNSNNSLLAFPGRK 246 (424)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 246 (424)
.. .........-.....|++++++..|+.+.. .+. |..+|+........... +...+++ .+..++++...
T Consensus 234 G~-~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~-I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~~ 309 (400)
T 3p5b_L 234 GV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDII 309 (400)
T ss_dssp SC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEEESS
T ss_pred CC-ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE-EEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEecCC
Confidence 53 222222223356789999988777777654 455 99999865433222221 1233343 55667776777
Q ss_pred CCeEEEEeCCCCCC
Q psy3710 247 SGHVHLVDLADPER 260 (424)
Q Consensus 247 dg~i~i~d~~~~~~ 260 (424)
.+.|..+|..+++.
T Consensus 310 ~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 310 NEAIFSANRLTGSD 323 (400)
T ss_dssp SCSEEEEESSSCCC
T ss_pred CCeEEEEEcCCCCc
Confidence 78888888666553
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00012 Score=65.87 Aligned_cols=237 Identities=8% Similarity=0.032 Sum_probs=132.6
Q ss_pred ceEEEEECC-CCCeeEeecC-CeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC
Q psy3710 12 GLLYAGFNQ-DQGCFACGME-DGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK 89 (424)
Q Consensus 12 ~V~~~~~s~-~g~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~ 89 (424)
....++++| ++..|.+... +.|+.+|.+......... .......+++.++++.+.++...... ....+...+. .
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~--~~~~v~~~~~-~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNN--DRPNNYILTR-E 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCT--TSEEEEEEEG-G
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCc--ccceEEEEeC-C
Confidence 456789998 3444554433 349999987765432222 34456789999999977766642100 0123444443 3
Q ss_pred CcEE--EEEeecCCeEEEEecC-CceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccC
Q psy3710 90 KQVV--ICLEFNAPVKGVRLRR-DKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKS 163 (424)
Q Consensus 90 ~~~~--~~~~~~~~v~~~~~~~-~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d 163 (424)
+... ..+........++++| ++.++++ .+.|..++.. .......... ........++++|++++|.++-...
T Consensus 214 g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~-~~~~~~~~~~-~~~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 214 SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFT-TQETTPLFTI-QDSGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETT-TTEEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTT
T ss_pred CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECC-CCcEEEEEEc-CCCCcceeEEEcCCCCEEEEEECCC
Confidence 3222 2333344567888999 6766665 5788888875 3332122222 1112345789999999666646778
Q ss_pred CeEEEEeCCCCCCC---Ccccccc---------------cCCeE-EEEEc--------cCCCEEEEEecCCcEEEEEECC
Q psy3710 164 GHVHLVDLADPERP---PLDIAAH---------------EAPLS-CIALN--------QTGTRLATASYKGTLIRVFDTG 216 (424)
Q Consensus 164 g~i~i~d~~~~~~~---~~~~~~~---------------~~~v~-~~~~~--------~~~~~l~~~~~d~~~i~iwd~~ 216 (424)
+.|..++.+..... +..+.+. -.... .++.. ++|.+.++-...+. |+.++.
T Consensus 292 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~-I~~i~~- 369 (430)
T 3tc9_A 292 HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHC-IRILTP- 369 (430)
T ss_dssp TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTE-EEEECT-
T ss_pred CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcE-EEEECC-
Confidence 89999887632110 1111110 01122 45543 33555555555666 888884
Q ss_pred CcceeeEEec--------------------ceeeeeecCCCCeEEEEeecCCeEEEEeCC
Q psy3710 217 SGQKLNELRR--------------------GLCVLCPNSNNSLLAFPGRKSGHVHLVDLA 256 (424)
Q Consensus 217 ~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~ 256 (424)
+++....... ....+++++++..++++-..+..|+.++++
T Consensus 370 ~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 370 QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 4543322211 134567777666666666667777777653
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00028 Score=63.44 Aligned_cols=152 Identities=14% Similarity=0.069 Sum_probs=89.3
Q ss_pred EEEeecCC--CCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecC---CcEEEEEECCCcc
Q psy3710 145 CVLCPNSN--NSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK---GTLIRVFDTGSGQ 219 (424)
Q Consensus 145 ~~~~~~~~--~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~~i~iwd~~~~~ 219 (424)
..++++|+ ...|.+ +...+.|+.+|..++ .+..+.........++++++|+++++.... ...+...+...+.
T Consensus 142 ~gvavd~~s~~g~Lyv-~D~~~~I~~id~~~g--~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYW-VGQRDAFRHVDFVNQ--YVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CEEEECTTTTTCEEEE-ECBTSCEEEEETTTT--EEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred ceEEEccccCCCEEEE-EeCCCCEEEEECCCC--EEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 46688874 344554 444489999998764 333333344568999999999944443311 1103333332221
Q ss_pred e-eeEEe--cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec-cCCCCeEEEEEcCCCCEEEEEeC-CCcEE
Q psy3710 220 K-LNELR--RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA-AHEAPLSCIALNQTGTRLATASY-KGTLI 294 (424)
Q Consensus 220 ~-~~~~~--~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d~~~i 294 (424)
. ...+. .....+++++.+..++++-..++.|+.+|..++......+. +....-..++|+|++++|+.+.. ... |
T Consensus 219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~-I 297 (433)
T 4hw6_A 219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC-I 297 (433)
T ss_dssp CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE-E
T ss_pred eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE-E
Confidence 1 01111 22456788886667777666788999999876542111111 12223357999999996666655 455 8
Q ss_pred EEEECC
Q psy3710 295 RVFDTG 300 (424)
Q Consensus 295 ~iwd~~ 300 (424)
+.++..
T Consensus 298 ~~~~~d 303 (433)
T 4hw6_A 298 YRVDYN 303 (433)
T ss_dssp EEEEBC
T ss_pred EEEeCC
Confidence 988765
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00033 Score=57.40 Aligned_cols=195 Identities=11% Similarity=0.106 Sum_probs=121.4
Q ss_pred cCCeEEEEecCCc-eEEE-ee--ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCC
Q psy3710 99 NAPVKGVRLRRDK-IVVV-LE--GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADP 174 (424)
Q Consensus 99 ~~~v~~~~~~~~~-~~~~-~~--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~ 174 (424)
...+..++++|++ .+.+ .+ +.|..+|. .++.+..+.... ....-.+++.+++.++++ .-.++.+.++++...
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~--~g~v~~~i~l~g-~~D~EGIa~~~~g~~~vs-~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTT--NGDLIRTIPLDF-VKDLETIEYIGDNQFVIS-DERDYAIYVISLTPN 101 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEET--TCCEEEEEECSS-CSSEEEEEECSTTEEEEE-ETTTTEEEEEEECTT
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeC--CCCEEEEEecCC-CCChHHeEEeCCCEEEEE-ECCCCcEEEEEcCCC
Confidence 4579999999865 3333 44 45555565 467777664322 123445677788876665 566788999988764
Q ss_pred CC--CCccc------ccccCCeEEEEEccCCCEEEEEecCCcEEEEEECC---CcceeeEEe----------cceeeeee
Q psy3710 175 ER--PPLDI------AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG---SGQKLNELR----------RGLCVLCP 233 (424)
Q Consensus 175 ~~--~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~---~~~~~~~~~----------~~~~~~~~ 233 (424)
.. ..... ...+.....++|+|.++.|+++..... ..+|.+. ....+..+. .....+++
T Consensus 102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p-~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~ 180 (255)
T 3qqz_A 102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP-IEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEF 180 (255)
T ss_dssp CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS-EEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEE
T ss_pred CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC-ceEEEEcccccCCceeeecchhhccccccCCceeEEE
Confidence 22 01111 123455789999999988887777655 5555553 111122221 23577889
Q ss_pred cCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec-cC------CCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 234 NSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA-AH------EAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 234 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~-~~------~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
+|....+++....+..+..+|..........+. +. -.....|+|.++|+ |+..++... ++.+...
T Consensus 181 dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~-~y~f~~~ 252 (255)
T 3qqz_A 181 NQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNR-FYRFTPQ 252 (255)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTE-EEEEEC-
T ss_pred cCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCce-EEEEEec
Confidence 999888888888899999999775421111222 11 13678999999997 444466665 6766543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00054 Score=66.16 Aligned_cols=222 Identities=9% Similarity=-0.009 Sum_probs=137.2
Q ss_pred CCeEEEEECCCCcEEEEEeecCCeEEEEecCC-ceEEEe---eccEEEEeecCCC---ceeEEEeeCCCCCeeEEEeecC
Q psy3710 79 NNRVMIWDDLKKQVVICLEFNAPVKGVRLRRD-KIVVVL---EGLIKVYTFIQCP---QQLHVFETNPNPKGLCVLCPNS 151 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~---~~~i~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 151 (424)
...|+..++........+.....+.++++.+. +.++.+ .+.|+.+++.... .....+.... .....+++.+
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l--~~P~GLAvD~ 480 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI--QAPDGLAVDW 480 (791)
T ss_dssp BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC--SCCCEEEEET
T ss_pred ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC--CCcceeeeee
Confidence 46788888876665555555667889999874 444444 4678888875211 2222222111 2234567777
Q ss_pred CCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEec-C-CcEEEEEECCCcceeeEEec---
Q psy3710 152 NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY-K-GTLIRVFDTGSGQKLNELRR--- 226 (424)
Q Consensus 152 ~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~~i~iwd~~~~~~~~~~~~--- 226 (424)
.+..|+++-...+.|.+.++... .....+...-.....|++.|.+..|+.... . +. |...++........+..
T Consensus 481 ~~~~LY~tD~~~~~I~v~~ldG~-~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~-I~~~~~dG~~~~~lv~~~l~ 558 (791)
T 3m0c_C 481 IHSNIYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNGVDIYSLVTENIQ 558 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSS-SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE-EEEEETTSCCEEEEECSSCS
T ss_pred cCCcEEEEecCCCeEEEEeCCCC-eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCe-EEEEecCCCceEEEEeCCCC
Confidence 77777765777899999999863 222222233455789999997666665543 2 66 88889865544333332
Q ss_pred ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeecc--CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEECCCCc
Q psy3710 227 GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAA--HEAPLSCIALNQTGTRLATASY-KGTLIRVFDTGSGQ 303 (424)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-d~~~i~iwd~~~~~ 303 (424)
....+++++.++.|+++-...+.|..+++..... ...+.. .-....+|++.. ..|+.+.. .+. |...|..+|+
T Consensus 559 ~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~~--~~lYwtD~~~~~-I~~~dk~tG~ 634 (791)
T 3m0c_C 559 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE--DKVFWTDIINEA-IFSANRLTGS 634 (791)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEET--TEEEEEETTTTE-EEEEETTTCC
T ss_pred CceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEeC--CEEEEEECCCCE-EEEEeCCCCc
Confidence 2567899998888888777788999999976442 222222 223445666643 35555544 455 8888877776
Q ss_pred eeeee
Q psy3710 304 KLNEL 308 (424)
Q Consensus 304 ~~~~~ 308 (424)
.+..+
T Consensus 635 ~~~~l 639 (791)
T 3m0c_C 635 DVNLL 639 (791)
T ss_dssp CCEEE
T ss_pred ceEEe
Confidence 65554
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00045 Score=62.05 Aligned_cols=236 Identities=9% Similarity=0.017 Sum_probs=130.8
Q ss_pred ceEEEEECCC---CCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCC-eEEEEEC
Q psy3710 12 GLLYAGFNQD---QGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNN-RVMIWDD 87 (424)
Q Consensus 12 ~V~~~~~s~~---g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~-~i~iwd~ 87 (424)
....++|+|+ |.++++-....|+.++..+++...... .......+++.++++ |.++..... .+. .+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~---~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSS---DTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSC---TTSEEEEEECG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCC---cccceEEEEEC
Confidence 4568899985 554444333449999987665533222 244577899999999 544442100 011 2333332
Q ss_pred CCCcE-EEEEeecCCeEEEEecC-CceEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeecc
Q psy3710 88 LKKQV-VICLEFNAPVKGVRLRR-DKIVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRK 162 (424)
Q Consensus 88 ~~~~~-~~~~~~~~~v~~~~~~~-~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (424)
..+.. ...+........+++.| ++.+.++ ++.|+.++.. ++.....+...........++++|+++.|.++-..
T Consensus 215 ~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~-~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~ 293 (433)
T 4hw6_A 215 ASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA-TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG 293 (433)
T ss_dssp GGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTT-TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT
T ss_pred CCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC-CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC
Confidence 22111 11222334567788998 6666555 5678888874 34442222222111223468999999966664667
Q ss_pred CCeEEEEeCCCCCCCC---cccccc---------------cCCeEEEEE---------ccCCCEEEEEecCCcEEEEEEC
Q psy3710 163 SGHVHLVDLADPERPP---LDIAAH---------------EAPLSCIAL---------NQTGTRLATASYKGTLIRVFDT 215 (424)
Q Consensus 163 dg~i~i~d~~~~~~~~---~~~~~~---------------~~~v~~~~~---------~~~~~~l~~~~~d~~~i~iwd~ 215 (424)
.+.|+.++........ ..+.+. -.....+++ .++|.+.++-...+. |+.++.
T Consensus 294 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~-I~~~~~ 372 (433)
T 4hw6_A 294 KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT-VRVLTP 372 (433)
T ss_dssp TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE-EEEECT
T ss_pred CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE-EEEECC
Confidence 8899998876321111 111111 123567898 667766666666677 888885
Q ss_pred CCcceeeEEec--------------------ceeeeeecCCCCeEEEEeecCCeEEEEeC
Q psy3710 216 GSGQKLNELRR--------------------GLCVLCPNSNNSLLAFPGRKSGHVHLVDL 255 (424)
Q Consensus 216 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~dg~i~i~d~ 255 (424)
++........ ....++++|.+..++++-..++.|+.+++
T Consensus 373 -~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 373 -EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp -TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred -CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 4533222210 12345666555555555555666666654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.0017 Score=62.74 Aligned_cols=225 Identities=7% Similarity=-0.061 Sum_probs=134.2
Q ss_pred eeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCC----cEEEEEe-e
Q psy3710 24 CFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKK----QVVICLE-F 98 (424)
Q Consensus 24 ~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~----~~~~~~~-~ 98 (424)
+|+.+....|+..+++......... .......+++.+..+.|+.+... .+.|+.+++... .....+. .
T Consensus 397 ~Ll~an~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~------~~~I~~~~l~g~~~~~~~~~vi~~~ 469 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDTVISRD 469 (791)
T ss_dssp EEEEECBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETT------TTEEEEEEC--------CEEEECSS
T ss_pred ccccccccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeecc------ceeEEEEeccCCCCCcceeEEEecC
Confidence 5555555568888876554322222 24556678888877777777653 578988888643 1222222 2
Q ss_pred cCCeEEEEecCCc-eEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeecc-CCeEEEEeCCC
Q psy3710 99 NAPVKGVRLRRDK-IVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRK-SGHVHLVDLAD 173 (424)
Q Consensus 99 ~~~v~~~~~~~~~-~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-dg~i~i~d~~~ 173 (424)
...+..|++.+.+ .+..+ .+.|.+.++. +.....+.... ......++++|.+.+|+.+-.. .+.|...++..
T Consensus 470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld--G~~~~~l~~~~-l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG 546 (791)
T 3m0c_C 470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFREN-GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 546 (791)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEEEEEECT-TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCCcceeeeeecCCcEEEEecCCCeEEEEeCC--CCeEEEEEeCC-CCCcceEEEecCCCCEEEecCCCCCeEEEEecCC
Confidence 3456788888655 33334 5688888875 33333332211 1235678888887777763323 37888888875
Q ss_pred CCCCCcccccccCCeEEEEEccCCCEEEEEec-CCcEEEEEECCCcceeeEEecc---eeeeeecCCCCeEEEEeecCCe
Q psy3710 174 PERPPLDIAAHEAPLSCIALNQTGTRLATASY-KGTLIRVFDTGSGQKLNELRRG---LCVLCPNSNNSLLAFPGRKSGH 249 (424)
Q Consensus 174 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~ 249 (424)
. .....+...-.....|++++.+..|+.+.. ... |...++........+... ...+.+...+..++++-...+.
T Consensus 547 ~-~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~-I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~ 624 (791)
T 3m0c_C 547 V-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 624 (791)
T ss_dssp C-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTE
T ss_pred C-ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc-EEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCE
Confidence 3 222222223356789999987777766654 455 999998654443333321 1222333355677777777888
Q ss_pred EEEEeCCCCCC
Q psy3710 250 VHLVDLADPER 260 (424)
Q Consensus 250 i~i~d~~~~~~ 260 (424)
|...|..+++.
T Consensus 625 I~~~dk~tG~~ 635 (791)
T 3m0c_C 625 IFSANRLTGSD 635 (791)
T ss_dssp EEEEETTTCCC
T ss_pred EEEEeCCCCcc
Confidence 99888777654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00079 Score=57.41 Aligned_cols=133 Identities=14% Similarity=0.171 Sum_probs=85.0
Q ss_pred CCCeEEEEECCCCcEEEEEeecCCeEEEEecCCc--------eEEEe--e---ccEEEEeecCCCceeEEEeeC------
Q psy3710 78 PNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDK--------IVVVL--E---GLIKVYTFIQCPQQLHVFETN------ 138 (424)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~--~---~~i~v~~~~~~~~~~~~~~~~------ 138 (424)
..+-+.+||+ +|+.++.+.. +.++.+..-|+- ..+++ + ++|.+|++......+..+...
T Consensus 48 k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t 125 (355)
T 3amr_A 48 KKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIAT 125 (355)
T ss_dssp TTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEEC
T ss_pred CCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCC
Confidence 3689999999 9999988764 667777776643 23444 3 579999885344445554221
Q ss_pred --CCCCeeEEEeecCC-CC-eEEEeeccCCeEEEEeCCCCC------CCCcccccccCCeEEEEEccCCCEEEEEecCCc
Q psy3710 139 --PNPKGLCVLCPNSN-NS-LLAFPGRKSGHVHLVDLADPE------RPPLDIAAHEAPLSCIALNQTGTRLATASYKGT 208 (424)
Q Consensus 139 --~~~~~~~~~~~~~~-~~-~l~~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 208 (424)
..+.+++ +.-++. ++ ++++ ...+|.+..|++.... +.++++.. .+.+..+...+....|+.+-++..
T Consensus 126 ~~~~pyGlc-ly~~~~~g~~yafV-~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~G 202 (355)
T 3amr_A 126 AINEVYGFT-LYHSQKTGKYYAMV-TGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEA 202 (355)
T ss_dssp CCSSCCCEE-EEECTTTCCEEEEE-ECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTE
T ss_pred CCCCeeEEE-EEecCCCCcEEEEE-ECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccce
Confidence 2233332 222553 44 4554 7888999999984311 22333332 457788888888888988888877
Q ss_pred EEEEEECC
Q psy3710 209 LIRVFDTG 216 (424)
Q Consensus 209 ~i~iwd~~ 216 (424)
|..++.+
T Consensus 203 -Iw~~da~ 209 (355)
T 3amr_A 203 -IWKFSAE 209 (355)
T ss_dssp -EEEEECS
T ss_pred -EEEEeCC
Confidence 7777754
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=0.0031 Score=59.38 Aligned_cols=348 Identities=9% Similarity=-0.000 Sum_probs=183.2
Q ss_pred CCceEEEEECCCCCeeEee-cCCe-EEEEeCCcCcc-cccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEE
Q psy3710 10 KNGLLYAGFNQDQGCFACG-MEDG-FRIYNCDPLKE-KERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWD 86 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g-~~~~-i~iw~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd 86 (424)
-.....++|++.+..|..+ ...+ |..++.+.... .............+++.+.+..+..+... .+.|.+.+
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~------~~~I~v~~ 112 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSE------TNRIEVSN 112 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETT------TTEEEEEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCC------CCEEEEEE
Confidence 3456788999876666644 3334 88888765432 11111122456778888877777777643 58999999
Q ss_pred CCCCcEEEEEe-ecCCeEEEEecCC-ceEEEee----ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEee
Q psy3710 87 DLKKQVVICLE-FNAPVKGVRLRRD-KIVVVLE----GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPG 160 (424)
Q Consensus 87 ~~~~~~~~~~~-~~~~v~~~~~~~~-~~~~~~~----~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (424)
+........+. .-.....+++.|. +.+..+| +.|...+++ +.....+... .......+++++++..|..+-
T Consensus 113 ~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d--G~~~~~l~~~-~~~~P~Glald~~~~~LY~aD 189 (619)
T 3s94_A 113 LDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFIIINS-EIYWPNGLTLDYEEQKLYWAD 189 (619)
T ss_dssp TTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEECS-SCSSEEEEEEETTTTEEEEEE
T ss_pred CCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC--CCceEEEEeC-CCCCCcEEEEEccCCEEEEEe
Confidence 86543322222 3456788999886 5555554 355555653 4333333221 123456788888877777756
Q ss_pred ccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEecc-------------
Q psy3710 161 RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG------------- 227 (424)
Q Consensus 161 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~------------- 227 (424)
...+.|..+|++.. .......+.......|++.++ ..+++-...+. |...|..+++....+...
T Consensus 190 ~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~-V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~ 266 (619)
T 3s94_A 190 AKLNFIHKSNLDGT-NRQAVVKGSLPHPFALTLFED-ILYWTDWSTHS-ILACNKYTGEGLREIHSDIFSPMDIHAFSQQ 266 (619)
T ss_dssp TTTCCEEEESSSCC-EEC---------CCCEEESSS-EEEEECTTTCS-EEEEESSSCCCCEECCSCCCCCSEEEECCGG
T ss_pred CCCCeEEEecCCCC-ccEEEEeCCCCCceEEEEeCC-EEEEecCCCCE-EEEEECCCCcccEEEecCCCCCcEEEEEccc
Confidence 67788999998763 222222212222346677655 34444445566 888887766433222100
Q ss_pred ---------------eeeeee-----------cC-------C--------CCeEEEEeecCCeEEEEeCCCCCCCCeeec
Q psy3710 228 ---------------LCVLCP-----------NS-------N--------NSLLAFPGRKSGHVHLVDLADPERPPLDIA 266 (424)
Q Consensus 228 ---------------~~~~~~-----------~~-------~--------~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~ 266 (424)
...+|+ .| + ...+++ +..+.|+..++.........+.
T Consensus 267 ~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~--~~~~~i~~i~l~~~~~~~~~~~ 344 (619)
T 3s94_A 267 RQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLL--ARRTDLRRISLDTPDFTDIVLQ 344 (619)
T ss_dssp GSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEE--EESSCEEEEESSSTTCCCEECC
T ss_pred cCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEE--EcccceEEEecCCCccceeEEe
Confidence 000111 11 1 112222 2345777777776542222221
Q ss_pred -cCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEECCCCceeeee------------cc-CCcEEEEEeCCCcEEEEEccc
Q psy3710 267 -AHEAPLSCIALNQTGTRLATAS-YKGTLIRVFDTGSGQKLNEL------------RR-DSSYLCVSSDHGTVHVFSVDE 331 (424)
Q Consensus 267 -~~~~~v~~~~~~~~~~~l~~~~-~d~~~i~iwd~~~~~~~~~~------------~~-~~~~l~~~~~d~~i~iw~~~~ 331 (424)
..-..+.+++|++.+..|+.+. ..+. |+.+++........+ .+ .+++.++-+..+.|.+.++..
T Consensus 345 ~~~l~~~~~ld~d~~~~~ly~sD~~~~~-I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G 423 (619)
T 3s94_A 345 LEDIRHAIAIDYDPVEGYIYWTDDEVRA-IRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNG 423 (619)
T ss_dssp CSCCSSEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ccccCccEEEEEEcCCCeEEEEeCCCCe-EEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCC
Confidence 1234578899998655665555 4566 999988754322211 11 233344444455666666654
Q ss_pred cccccccccceeeeccCccccCCceeeEEeecCCCceEEEEecCCCeEEEEec--cCcEEEEEec
Q psy3710 332 AQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICA--DGSYYKFMFN 394 (424)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--dg~v~~~~~~ 394 (424)
... ..+ ....-.....+++.|...+|+.+.. .+.|...+++
T Consensus 424 ~~~-~~l---------------------~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d 466 (619)
T 3s94_A 424 TMR-KIL---------------------ISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD 466 (619)
T ss_dssp CSC-EEE---------------------ECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CeE-EEE---------------------EECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC
Confidence 211 000 0001123567888887566666543 2455555544
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.0012 Score=54.12 Aligned_cols=194 Identities=9% Similarity=0.076 Sum_probs=126.3
Q ss_pred CCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeec--CCeEEEEecCCceEEEe---eccEEEEee
Q psy3710 51 DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFN--APVKGVRLRRDKIVVVL---EGLIKVYTF 125 (424)
Q Consensus 51 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~---~~~i~v~~~ 125 (424)
.+.+..+++.|+++.|.++... ++.|...|.. ++.++.+... .....+++.+++.++++ ++.+.++++
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~------~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINK------PAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEET------TEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECC------CCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 3568999999998888887754 6899999987 9998888743 57889999999887665 568889988
Q ss_pred cCCCc--eeEEEee----CCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCC--CCCCCccc-------ccccCCeEE
Q psy3710 126 IQCPQ--QLHVFET----NPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLAD--PERPPLDI-------AAHEAPLSC 190 (424)
Q Consensus 126 ~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~--~~~~~~~~-------~~~~~~v~~ 190 (424)
..... .+..... .....+.-.++++|.++.|.+ +.+.....+|.++. .......+ ..+...+.+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-a~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~ 177 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-FKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSG 177 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-EEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE-EECcCCceEEEEcccccCCceeeecchhhccccccCCcee
Confidence 64443 2233321 122344578899999987777 55544444554431 10111211 112346789
Q ss_pred EEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe--c----------ceeeeeecCCCCeEEEEeecCCeEEEEeC
Q psy3710 191 IALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR--R----------GLCVLCPNSNNSLLAFPGRKSGHVHLVDL 255 (424)
Q Consensus 191 ~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~--~----------~~~~~~~~~~~~~~~~~~~~dg~i~i~d~ 255 (424)
++++|....++..+.....+..+|.. ++.+..+. . ....+++.++|..++ .++.+.++.|..
T Consensus 178 l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI--vsE~n~~y~f~~ 251 (255)
T 3qqz_A 178 AEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI--VSEPNRFYRFTP 251 (255)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE--EETTTEEEEEEC
T ss_pred EEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE--EcCCceEEEEEe
Confidence 99999766555555444438888865 55554443 1 246789999986443 466677777754
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.26 E-value=0.0056 Score=61.88 Aligned_cols=347 Identities=11% Similarity=0.090 Sum_probs=175.1
Q ss_pred CCceEEEEECCC------CCeeEeecC-Ce-EEEEeCCcCcccccccccC-CCeeeEEEec-cC-ceEEEEeCCcCCCcC
Q psy3710 10 KNGLLYAGFNQD------QGCFACGME-DG-FRIYNCDPLKEKERQDFTD-GGLGHVEMLF-RC-NYLALVGGGTHPKYP 78 (424)
Q Consensus 10 ~~~V~~~~~s~~------g~~la~g~~-~~-i~iw~~~~~~~~~~~~~~~-~~i~~~~~~~-~~-~~l~~~~~~~~~~~~ 78 (424)
++.|.|+++.|. ++++|+|.. ++ ++|+++.+.+.+....... .....+.+.. .+ .+|. ++- .
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~-igl------~ 625 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLL-CAL------G 625 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEE-EEE------T
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEE-EEe------C
Confidence 567999999864 378999985 66 9999998766544333321 1223333322 22 3343 332 3
Q ss_pred CCeEEEEE--CCCCcEEEE--Ee-ecCCeEEEEecCCc--eEEEe-eccEEEEeecCCCceeEEEeeCCC-CCeeEEEee
Q psy3710 79 NNRVMIWD--DLKKQVVIC--LE-FNAPVKGVRLRRDK--IVVVL-EGLIKVYTFIQCPQQLHVFETNPN-PKGLCVLCP 149 (424)
Q Consensus 79 d~~i~iwd--~~~~~~~~~--~~-~~~~v~~~~~~~~~--~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 149 (424)
||.+.-+. ..+|+.... .. ...++.=..+...+ .+++. +....+|.- .++.... ..... ...++.+.-
T Consensus 626 dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~--~~~l~~s-~l~~~~v~~~~~F~s 702 (1158)
T 3ei3_A 626 DGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSS--NHKLVFS-NVNLKEVNYMCPLNS 702 (1158)
T ss_dssp TSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEES--SSSEEEE-EBSSSCCCEEEEECC
T ss_pred CCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEc--CCceEEe-ccChHHhceEeccCc
Confidence 67776554 345555432 12 23444433343322 23333 555445543 2222211 11111 112333321
Q ss_pred cCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecC-----------------------
Q psy3710 150 NSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK----------------------- 206 (424)
Q Consensus 150 ~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------------- 206 (424)
..-..-++. ..++.++|..++...+....--.-...+..++++|+.+.++.+..+
T Consensus 703 e~~~~g~v~--~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1158)
T 3ei3_A 703 DGYPDSLAL--ANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALS 780 (1158)
T ss_dssp SSSTTEEEE--ECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSE
T ss_pred ccCCCcEEE--EcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhh
Confidence 111223443 3345688888765322111111223567788888876654433211
Q ss_pred --------------------------CcEEEEEECCCcceeeEEecc-------eeeeeecCCCCeEEEEee--------
Q psy3710 207 --------------------------GTLIRVFDTGSGQKLNELRRG-------LCVLCPNSNNSLLAFPGR-------- 245 (424)
Q Consensus 207 --------------------------~~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-------- 245 (424)
.. |++.|..+.+.+..++-. +..+.+..+...+++.|+
T Consensus 781 ~~~~~~~~~~~~~~~~~~~~g~~~~~s~-i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~ 859 (1158)
T 3ei3_A 781 SSVSSSKLFSSSTAPHETSFGEEVEVHN-LLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEA 859 (1158)
T ss_dssp EEECCCCCC----------CCCEEEEEE-EEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCS
T ss_pred hcccccccccccccCchhhcCCceeeEE-EEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCC
Confidence 23 677777777766555422 222233333334444465
Q ss_pred --cCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceee------------eeccC
Q psy3710 246 --KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN------------ELRRD 311 (424)
Q Consensus 246 --~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~------------~~~~~ 311 (424)
..|.|++|++...+.....-...++++++++-- +| +|++|-. .. |++|++...+.+. .+...
T Consensus 860 ~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~ig-~~-l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~ 935 (1158)
T 3ei3_A 860 EPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASIN-ST-VRLYEWTTEKELRTECNHYNNIMALYLKTK 935 (1158)
T ss_dssp SCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEET-TE-EEEEEECTTSCEEEEEEECCCSCEEEEEEE
T ss_pred CCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEcC-CE-EEEEECCCCceEEEEeeccccEEEEEEecc
Confidence 357899999974321111222456788888743 45 4444433 45 9999998654333 11223
Q ss_pred CcEEEEEeCCCcEEEEEccccccccccccceeeeccCccccCCceeeEEeec--CCCceEEEEecCCCeEEEEeccCcEE
Q psy3710 312 SSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIP--SDPPCICAFGADSNSIIVICADGSYY 389 (424)
Q Consensus 312 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~l~~~~~dg~v~ 389 (424)
+.+++.|..-..+.++..+..+ .+ +..+..+ ...++++.|-.+ ..++.+..+|.+.
T Consensus 936 ~~~I~vgD~~~Sv~~~~y~~~~--~~-------------------L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~ 993 (1158)
T 3ei3_A 936 GDFILVGDLMRSVLLLAYKPME--GN-------------------FEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLF 993 (1158)
T ss_dssp TTEEEEEESSBCEEEEEEETTT--TE-------------------EEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEE
T ss_pred CCEEEEEEhhheEEEEEEEcCC--Ce-------------------EEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEE
Confidence 5566666665555555433210 00 0001111 112445555444 4777799999999
Q ss_pred EEEecC
Q psy3710 390 KFMFNS 395 (424)
Q Consensus 390 ~~~~~~ 395 (424)
++.+++
T Consensus 994 vl~~~~ 999 (1158)
T 3ei3_A 994 VCQKDS 999 (1158)
T ss_dssp EEEECT
T ss_pred EEecCC
Confidence 999886
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0039 Score=58.78 Aligned_cols=218 Identities=10% Similarity=-0.024 Sum_probs=137.8
Q ss_pred CCeEEEEECCCCcEEEEEee--cCCeEEEEecCCc-eEEEe---eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCC
Q psy3710 79 NNRVMIWDDLKKQVVICLEF--NAPVKGVRLRRDK-IVVVL---EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSN 152 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~-~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (424)
.+.|+..++++......+.. -..+.+++|.+.. .+..+ .+.|..+++. .......+.... .....+++++.
T Consensus 14 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~-g~~~~~v~~~g~--~~P~GlAvD~~ 90 (628)
T 4a0p_A 14 RADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN-GSALEHVVEFGL--DYPEGMAVDWL 90 (628)
T ss_dssp TTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSC--SCCCEEEEETT
T ss_pred CCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECC-CCCcEEEEeCCC--CCcceEEEEeC
Confidence 47899999987654443332 3468899999754 44444 5788888875 322222232221 12334566666
Q ss_pred CCeEEEeeccCCeEEEEeCCCCCCCCccc-ccccCCeEEEEEccCCCEEEEEec--CCcEEEEEECCCcceeeEEe--cc
Q psy3710 153 NSLLAFPGRKSGHVHLVDLADPERPPLDI-AAHEAPLSCIALNQTGTRLATASY--KGTLIRVFDTGSGQKLNELR--RG 227 (424)
Q Consensus 153 ~~~l~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~--d~~~i~iwd~~~~~~~~~~~--~~ 227 (424)
+..|+.+-...+.|.+.+++.. ....+ ...-.....|++.|....|+.... .+. |...++.......... ..
T Consensus 91 ~~~LY~tD~~~~~I~v~~~dG~--~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~-I~r~~~dG~~~~~l~~~~~~ 167 (628)
T 4a0p_A 91 GKNLYWADTGTNRIEVSKLDGQ--HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPK-IDRAAMDGSERTTLVPNVGR 167 (628)
T ss_dssp TTEEEEEETTTTEEEEEETTST--TCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCE-EEEEETTSCSCEEEECSCSS
T ss_pred CCEEEEEECCCCEEEEEecCCC--cEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCE-EEEEeCCCCceEEEECCCCC
Confidence 6667664677889999999764 22222 233455789999996556655542 456 8888876544332222 22
Q ss_pred eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceee
Q psy3710 228 LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLN 306 (424)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~ 306 (424)
...+++++.++.+.++-...+.|..+|+..... ..+...-.....+++.. +..+.+-...+. |...|..+|+...
T Consensus 168 P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l~~P~glav~~-~~ly~tD~~~~~-I~~~dk~tg~~~~ 242 (628)
T 4a0p_A 168 ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVIADDLPHPFGLTQYQ-DYIYWTDWSRRS-IERANKTSGQNRT 242 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECCSCEEEEEEET-TEEEEEETTTTE-EEEEETTTCCSCE
T ss_pred cceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEeeccCCCceEEEEEC-CEEEEecCCCCE-EEEEECCCCCceE
Confidence 567899999999998888889999999976543 33334445567888865 334444444566 8888887775443
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0024 Score=57.70 Aligned_cols=152 Identities=13% Similarity=0.060 Sum_probs=90.0
Q ss_pred eeeEEEec-cCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeec----CCeEEEEe-------cCCce-EEEe-ec-
Q psy3710 54 LGHVEMLF-RCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFN----APVKGVRL-------RRDKI-VVVL-EG- 118 (424)
Q Consensus 54 i~~~~~~~-~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~----~~v~~~~~-------~~~~~-~~~~-~~- 118 (424)
...+++.| +.+.|.++... .+.|++.|++++......... .....++| ++++. ++++ +.
T Consensus 141 p~~la~dp~~~~~Lyv~~~~------~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~ 214 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDG------HKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD 214 (496)
T ss_dssp EEEEEEETTEEEEEEEEEET------EEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred CCEEEEccCCCCEEEEEECC------CCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence 34678887 35555555532 367999998777666544422 25899999 98886 4444 21
Q ss_pred -------cEEEEeecCCCcee-----EEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCC-------CCCC--C
Q psy3710 119 -------LIKVYTFIQCPQQL-----HVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLA-------DPER--P 177 (424)
Q Consensus 119 -------~i~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~-------~~~~--~ 177 (424)
.|.+++...++... ..+....++ ..++.+|++..|+++-..++.|..+|+. ++.. +
T Consensus 215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p---~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp 291 (496)
T 3kya_A 215 GKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQC---NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP 291 (496)
T ss_dssp TTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCC---CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred CCcccCceEEEEecCCCCceeecccceeeccCCCc---eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence 25566533212221 233322223 3457788666666547788999999997 4321 0
Q ss_pred --------Ccc-cc-cccCCeEEEEEccCCCEEEEEe-cCCcEEEEEEC
Q psy3710 178 --------PLD-IA-AHEAPLSCIALNQTGTRLATAS-YKGTLIRVFDT 215 (424)
Q Consensus 178 --------~~~-~~-~~~~~v~~~~~~~~~~~l~~~~-~d~~~i~iwd~ 215 (424)
... +. +.......++|+|+|+.|+.+. .... |+.++.
T Consensus 292 ~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~-I~kid~ 339 (496)
T 3kya_A 292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHY-FMRSDY 339 (496)
T ss_dssp BGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE-EEEEEE
T ss_pred cccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCE-EEEEec
Confidence 001 11 1234468999999999655554 4555 888654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00024 Score=71.05 Aligned_cols=213 Identities=13% Similarity=0.178 Sum_probs=141.6
Q ss_pred EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEe-cCCc
Q psy3710 33 FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRL-RRDK 111 (424)
Q Consensus 33 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~-~~~~ 111 (424)
|.|.|+.......+..... -+.-+.|..+.+++-. ..++.|+|+++...++.+..+.+|.--.| +++.
T Consensus 50 vvIidl~~~~~~~rrpi~A---dsAIMnP~~~iiALra--------g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~ 118 (1630)
T 1xi4_A 50 VVIIDMNDPSNPIRRPISA---DSAIMNPASKVIALKA--------GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT 118 (1630)
T ss_pred EEEEECCCCCCcccccccc---hhhccCCCcceEEEec--------CCeEEEeehHHhhhhcccccCCCceEEEecCCCe
Confidence 9999988766643322211 1233567777777765 37999999999999999998888888888 4666
Q ss_pred eEEEeeccEEEEeecCCCceeEEEeeCC--CCCeeEEEeecCCCCeEEEeec------cCCeEEEEeCCCCCCCCccccc
Q psy3710 112 IVVVLEGLIKVYTFIQCPQQLHVFETNP--NPKGLCVLCPNSNNSLLAFPGR------KSGHVHLVDLADPERPPLDIAA 183 (424)
Q Consensus 112 ~~~~~~~~i~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~------~dg~i~i~d~~~~~~~~~~~~~ 183 (424)
..++++..|..|++..+..+.+.+..|. ....+.....+++.++++..|- -.|.+.+|..+. +..+.+.+
T Consensus 119 l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er--~~sQ~ieg 196 (1630)
T 1xi4_A 119 VALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQPIEG 196 (1630)
T ss_pred eEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc--ccchhhhH
Confidence 7777899999999965555655555543 2355778888999999887553 458999999986 45667778
Q ss_pred ccCCeEEEEEcc--C-CCEEEEEec---CCcEEEEEECCCc---ceee-----E--Eec----c-eeeeeecCCCCeEEE
Q psy3710 184 HEAPLSCIALNQ--T-GTRLATASY---KGTLIRVFDTGSG---QKLN-----E--LRR----G-LCVLCPNSNNSLLAF 242 (424)
Q Consensus 184 ~~~~v~~~~~~~--~-~~~l~~~~~---d~~~i~iwd~~~~---~~~~-----~--~~~----~-~~~~~~~~~~~~~~~ 242 (424)
|.+....+.... . ...++.+.. .+. ++|.++... .+.. . ++. . ...+..++..+.+.+
T Consensus 197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k-Lhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~ 275 (1630)
T 1xi4_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (1630)
T ss_pred hHhhhheeccCCCCCCceEEEEEEecCCCce-EEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEE
Confidence 876655555432 1 223333322 256 899988543 1111 0 111 1 233445555555554
Q ss_pred EeecCCeEEEEeCCCCCC
Q psy3710 243 PGRKSGHVHLVDLADPER 260 (424)
Q Consensus 243 ~~~~dg~i~i~d~~~~~~ 260 (424)
-+.-|.|++||+.++..
T Consensus 276 -itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 276 -ITKYGYIHLYDLETGTC 292 (1630)
T ss_pred -EecCceEEEEecccchh
Confidence 78999999999999874
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0048 Score=58.19 Aligned_cols=196 Identities=11% Similarity=-0.022 Sum_probs=120.9
Q ss_pred CceEEEEECCCCCeeE-eecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECC
Q psy3710 11 NGLLYAGFNQDQGCFA-CGMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL 88 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la-~g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~ 88 (424)
..+..++|++.+..|. +-..++ |..++++.................+++.+.+..|..+... .+.|.+.++.
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~------~~~I~v~~~d 110 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTG------TNRIEVSKLD 110 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETT------TTEEEEEETT
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECC------CCEEEEEecC
Confidence 3577899998766666 444444 8888876543322222112345668888777777766643 5899999986
Q ss_pred CCcEEEEE-eecCCeEEEEecC-CceEEEee----ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeecc
Q psy3710 89 KKQVVICL-EFNAPVKGVRLRR-DKIVVVLE----GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRK 162 (424)
Q Consensus 89 ~~~~~~~~-~~~~~v~~~~~~~-~~~~~~~~----~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (424)
.......+ ..-....++++.| .+.+..+| +.|...+++ +.....+-. .......+++++++..|..+-..
T Consensus 111 G~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d--G~~~~~l~~--~~~~P~GlalD~~~~~LY~aD~~ 186 (628)
T 4a0p_A 111 GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD--GSERTTLVP--NVGRANGLTIDYAKRRLYWTDLD 186 (628)
T ss_dssp STTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEEC--SCSSEEEEEEETTTTEEEEEETT
T ss_pred CCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC--CCceEEEEC--CCCCcceEEEccccCEEEEEECC
Confidence 44332222 2345678999998 46655554 356666664 333333322 22345678889888888775667
Q ss_pred CCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcce
Q psy3710 163 SGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK 220 (424)
Q Consensus 163 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~ 220 (424)
.+.|..+|+..... ..+...-.....+++.. +..+++-...+. |...|..+++.
T Consensus 187 ~~~I~~~d~dG~~~--~v~~~~l~~P~glav~~-~~ly~tD~~~~~-I~~~dk~tg~~ 240 (628)
T 4a0p_A 187 TNLIESSNMLGLNR--EVIADDLPHPFGLTQYQ-DYIYWTDWSRRS-IERANKTSGQN 240 (628)
T ss_dssp TTEEEEEETTSCSC--EEEEECCSCEEEEEEET-TEEEEEETTTTE-EEEEETTTCCS
T ss_pred CCEEEEEcCCCCce--EEeeccCCCceEEEEEC-CEEEEecCCCCE-EEEEECCCCCc
Confidence 88999999976422 33433344556788765 344444445666 88888766643
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0029 Score=55.25 Aligned_cols=195 Identities=17% Similarity=0.270 Sum_probs=128.8
Q ss_pred EEEECCCCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC-CcEE
Q psy3710 15 YAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK-KQVV 93 (424)
Q Consensus 15 ~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~-~~~~ 93 (424)
+.-.+|..+.+|.-....+.|||+++...+..+..+ ..|..=.|. +.+.|+.++ +..|+-|+++. ..++
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~-e~VvfWkWi-s~~~l~lVT--------~taVyHWsi~~~s~P~ 139 (494)
T 1bpo_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWI-SLNTVALVT--------DNAVYHWSMEGESQPV 139 (494)
T ss_dssp EEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEEE-ETTEEEEEC--------SSEEEEEESSSSCCCE
T ss_pred eeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC-CCceEEEec-CCCeEEEEc--------CCeeEEecccCCCCch
Confidence 345788889999776666999999998887777773 456455554 456677777 68999999864 3455
Q ss_pred EEEe-e----cCCeEEEEecCCceEEEe----------eccEEEEeecCCCceeEEEeeCCCCCeeEEEee--cCCC-Ce
Q psy3710 94 ICLE-F----NAPVKGVRLRRDKIVVVL----------EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCP--NSNN-SL 155 (424)
Q Consensus 94 ~~~~-~----~~~v~~~~~~~~~~~~~~----------~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~ 155 (424)
+.+. | ...|..-..+++..+++. .|.+.+|..+ .+..+.+++|... ...+.. ++.. ..
T Consensus 140 kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e--r~~sQ~ieGhaa~--F~~~~~~g~~~~~~l 215 (494)
T 1bpo_A 140 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPIEGHAAS--FAQFKMEGNAEESTL 215 (494)
T ss_dssp EEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST--TCCEEEECCSEEE--EEEEECTTCSSEEEE
T ss_pred hheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc--ccccchheeeeee--eEEEecCCCCCCceE
Confidence 5555 2 346777777888866653 6889999985 4555666766421 111111 1111 22
Q ss_pred EEEeecc---CCeEEEEeCCCC--CCCCcc---------cccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCccee
Q psy3710 156 LAFPGRK---SGHVHLVDLADP--ERPPLD---------IAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL 221 (424)
Q Consensus 156 l~~~~~~---dg~i~i~d~~~~--~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~ 221 (424)
++. +.. .+.+++.++... ..+... -..-.+--.++..++.-..++..+.-|. +++||++++.++
T Consensus 216 f~f-a~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~-i~lyDleTgt~i 293 (494)
T 1bpo_A 216 FCF-AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCI 293 (494)
T ss_dssp EEE-EECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSE-EEEEETTTCCEE
T ss_pred EEE-EEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCce-EEEEecccceee
Confidence 333 433 378999998643 111110 0122445567888887788888999999 999999999998
Q ss_pred eEEe
Q psy3710 222 NELR 225 (424)
Q Consensus 222 ~~~~ 225 (424)
..-+
T Consensus 294 ~~nr 297 (494)
T 1bpo_A 294 YMNR 297 (494)
T ss_dssp EEEE
T ss_pred eeec
Confidence 7665
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0017 Score=58.67 Aligned_cols=244 Identities=5% Similarity=0.000 Sum_probs=131.3
Q ss_pred ceEEEEECC-CCCeeEeecCC-e-EEEEeCCcCcccccccc---cCCCeeeEEE-------eccCceEEEEeCCcCCCcC
Q psy3710 12 GLLYAGFNQ-DQGCFACGMED-G-FRIYNCDPLKEKERQDF---TDGGLGHVEM-------LFRCNYLALVGGGTHPKYP 78 (424)
Q Consensus 12 ~V~~~~~s~-~g~~la~g~~~-~-i~iw~~~~~~~~~~~~~---~~~~i~~~~~-------~~~~~~l~~~~~~~~~~~~ 78 (424)
....|+|+| ++..|.++... . |++.|.+.......... .......++| .++++.++++.........
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899999 35445544443 3 99999887665432222 1234678899 9999877777633100000
Q ss_pred CCeEEEEECCC-CcEE-----EEEeecCCeEEEEecCC-ceEEEe---eccEEEEeecC------CCce-----------
Q psy3710 79 NNRVMIWDDLK-KQVV-----ICLEFNAPVKGVRLRRD-KIVVVL---EGLIKVYTFIQ------CPQQ----------- 131 (424)
Q Consensus 79 d~~i~iwd~~~-~~~~-----~~~~~~~~v~~~~~~~~-~~~~~~---~~~i~v~~~~~------~~~~----------- 131 (424)
+..|.+.+... +... ..+..-.....++++|+ +.++++ ++.|..+|+.. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 12366665333 2221 22222234467888984 554444 67899999851 2221
Q ss_pred eEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCC---cccccc---------------cCCeE-EEE
Q psy3710 132 LHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPP---LDIAAH---------------EAPLS-CIA 192 (424)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~---~~~~~~---------------~~~v~-~~~ 192 (424)
...+-..........++++|+++.|.++-...+.|+.++.......+ ..+-+. -.... .++
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~ 379 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF 379 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence 11221111122346789999999666546778899997664321111 111111 01233 444
Q ss_pred Ec-------cCCCEEEEEecCCcEEEEEECCCcceeeEEecc---------------------------eeeeeecCCCC
Q psy3710 193 LN-------QTGTRLATASYKGTLIRVFDTGSGQKLNELRRG---------------------------LCVLCPNSNNS 238 (424)
Q Consensus 193 ~~-------~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---------------------------~~~~~~~~~~~ 238 (424)
.. ++|.++++-..... |+.++ .++. +.++-+. ...+++++++.
T Consensus 380 vd~~~~~~~~~g~lyVaD~~N~r-Ir~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g 456 (496)
T 3kya_A 380 VKNPDYTGEEEYDFYFVDRLNFC-VRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE 456 (496)
T ss_dssp EECTTCCSSCCEEEEEEEGGGTE-EEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred EccccccccCCCeEEEEECCCCE-EEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence 44 45666666566677 99998 4553 3333211 23355566544
Q ss_pred eEEEEeecCCeEEEEeCCCC
Q psy3710 239 LLAFPGRKSGHVHLVDLADP 258 (424)
Q Consensus 239 ~~~~~~~~dg~i~i~d~~~~ 258 (424)
.++++-..+..|+.+++...
T Consensus 457 ~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 457 MFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EEEEEETTTTEEEEEEECCC
T ss_pred EEEEEeCCCCEEEEEECCCC
Confidence 55554556666777666553
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.4e-05 Score=76.50 Aligned_cols=223 Identities=10% Similarity=-0.012 Sum_probs=129.2
Q ss_pred CCeEEEEECCCCcEEEEEeecCCeEEEEecCCc-eEEEe---eccEEEEeecCC---CceeEEEeeCCCCCeeEEEeecC
Q psy3710 79 NNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDK-IVVVL---EGLIKVYTFIQC---PQQLHVFETNPNPKGLCVLCPNS 151 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~---~~~i~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 151 (424)
.+.|+..++.+.+....+.....+.+++|.+.. .+..+ .+.|+.+++... ......+.... .....+++.+
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~--~~P~glavD~ 462 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI--QAPDGLAVDW 462 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC----CCCEECCC
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCC--CCcceEEEEe
Confidence 467888888777665555545567789998754 44444 578888887520 11111111111 1122456665
Q ss_pred CCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEec-C-CcEEEEEECCCcceeeEEec---
Q psy3710 152 NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY-K-GTLIRVFDTGSGQKLNELRR--- 226 (424)
Q Consensus 152 ~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~~i~iwd~~~~~~~~~~~~--- 226 (424)
.+..|+++-...+.|.++++... .....+.........|++.|.+.+|+.+.. . +. |...++........+..
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~-~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~-I~~~~~dG~~~~~l~~~~l~ 540 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGV-KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNGVDIYSLVTENIQ 540 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSC-CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCC-EEBCCSSSCCCCEESCSSCS
T ss_pred eCCcEEEEeccCCeEEEEecCCC-ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCe-EEEEeCCCCCeeEEEeCCCC
Confidence 55555553566789999998753 222222222345678899997655555443 2 56 88877754322211111
Q ss_pred ceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCce
Q psy3710 227 GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA--AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK 304 (424)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~ 304 (424)
....++++++++.++++-...+.|..+++..... ...+. ........|++..+ .++++....+. |..++..+|+.
T Consensus 541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~-V~~~d~~~G~~ 617 (699)
T 1n7d_A 541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEA-IFSANRLTGSD 617 (699)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEECSTTTC-EEEEETTTEEE
T ss_pred CccEEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC-EEEEEeCCCCe-EEEEEccCCCc
Confidence 2467899999888888788888999999975332 11111 11223445566544 34444445566 88888877776
Q ss_pred eeee
Q psy3710 305 LNEL 308 (424)
Q Consensus 305 ~~~~ 308 (424)
+..+
T Consensus 618 ~~~i 621 (699)
T 1n7d_A 618 VNLL 621 (699)
T ss_dssp EECC
T ss_pred eEEe
Confidence 6655
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0011 Score=56.46 Aligned_cols=182 Identities=14% Similarity=0.218 Sum_probs=105.6
Q ss_pred CCCEEEEEecCCcEEEEEECCCcceeeEEec-ceeeeeecC----CCCe--EEEEe-ec--CCeEEEEeCCCCCCCCeee
Q psy3710 196 TGTRLATASYKGTLIRVFDTGSGQKLNELRR-GLCVLCPNS----NNSL--LAFPG-RK--SGHVHLVDLADPERPPLDI 265 (424)
Q Consensus 196 ~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~----~~~~--~~~~~-~~--dg~i~i~d~~~~~~~~~~~ 265 (424)
....++.....+. +.+||+ +++.+..++. ....+.+-| .++. ++++. .. +++|.+|++.....+...+
T Consensus 39 ~~s~ii~t~k~~g-L~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 39 QNSKLITTNKKSG-LVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GGCEEEEEETTTE-EEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred CccEEEEEcCCCC-EEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 3355665666677 999999 8888888874 344444433 2222 34433 34 5899999774322223333
Q ss_pred cc------CC-CCeEEEEE--cCC-CC-EEEEEeCCCcEEEEEECC-------CCceeeeec-----------cCCcEEE
Q psy3710 266 AA------HE-APLSCIAL--NQT-GT-RLATASYKGTLIRVFDTG-------SGQKLNELR-----------RDSSYLC 316 (424)
Q Consensus 266 ~~------~~-~~v~~~~~--~~~-~~-~l~~~~~d~~~i~iwd~~-------~~~~~~~~~-----------~~~~~l~ 316 (424)
.. .. ..+..+++ +|. ++ +++....+|. +..|++. +.+.+.+|. +....|.
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~-~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGE-FEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSE-EEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCe-EEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 11 11 55677887 774 44 6888888888 9998882 335555553 3566788
Q ss_pred EEeCCCcEEEEEcccc-----ccccccccceeeeccCccccCCceeeEEeecCCCceEEEE--ecCCC-eEEEEec-cCc
Q psy3710 317 VSSDHGTVHVFSVDEA-----QKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAF--GADSN-SIIVICA-DGS 387 (424)
Q Consensus 317 ~~~~d~~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~-~l~~~~~-dg~ 387 (424)
.+-++.-|..++.+.. +.+.... .+. -...+..+++ .++++ ||++.+. +..
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~-------~g~-------------l~aDvEGLai~~~~~g~gyLivSsQG~~s 255 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRAD-------GRH-------------LTRDIEGLTIYYAADGKGYLMASSQGNSS 255 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBS-------SSS-------------BCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred EecccceEEEEeCCcCCCCCceEEEEec-------CCc-------------cccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence 8888766555554321 1111100 000 0113445666 56666 7777774 779
Q ss_pred EEEEEecCCccee
Q psy3710 388 YYKFMFNSKGECW 400 (424)
Q Consensus 388 v~~~~~~~~~~~~ 400 (424)
+.+|+.....+.+
T Consensus 256 ~~Vydr~~~~~~v 268 (355)
T 3amr_A 256 YAIYDRQGKNKYV 268 (355)
T ss_dssp EEEEESSTTCCEE
T ss_pred EEEEECCCCCcEE
Confidence 9999986443333
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00017 Score=69.07 Aligned_cols=214 Identities=11% Similarity=0.050 Sum_probs=123.3
Q ss_pred eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCC---CCCCcccccccCCeEEEEE
Q psy3710 117 EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADP---ERPPLDIAAHEAPLSCIAL 193 (424)
Q Consensus 117 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~ 193 (424)
...|+..++. .......+.... ....+++++.+..|+++-...+.|+.+++... ......+.........|++
T Consensus 385 ~~~I~~id~~-~~~~~~~~~~~~---~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glav 460 (699)
T 1n7d_A 385 RHEVRKMTLD-RSEYTSLIPNLR---NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 460 (699)
T ss_dssp TTC-CEECTT-SCCEECCSCCCT---TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEEC
T ss_pred ccceEEEeCC-CCcceeeeccCc---ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEE
Confidence 5577777764 333222222222 23456788877777774566789999998751 1222222222233567888
Q ss_pred ccCCCEE-EEEecCCcEEEEEECCCcceeeEEec---ceeeeeecCCCCeEEEEeecC-CeEEEEeCCCCCCCCeeeccC
Q psy3710 194 NQTGTRL-ATASYKGTLIRVFDTGSGQKLNELRR---GLCVLCPNSNNSLLAFPGRKS-GHVHLVDLADPERPPLDIAAH 268 (424)
Q Consensus 194 ~~~~~~l-~~~~~d~~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d-g~i~i~d~~~~~~~~~~~~~~ 268 (424)
.+.+..| ++-...+. |.+.++........+.. ....++++|.+..++++.... +.|..+++...... ......
T Consensus 461 D~~~g~LY~tD~~~~~-I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~l~~~~ 538 (699)
T 1n7d_A 461 DWIHSNIYWTDSVLGT-VSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTEN 538 (699)
T ss_dssp CCSSSBCEECCTTTSC-EEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-EESCSS
T ss_pred EeeCCcEEEEeccCCe-EEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-EEEeCC
Confidence 8654444 44455677 99999875543333322 246678888888887755443 78888887653321 122222
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCcEEEEEECCCCceeeeec-------c-----C-CcEEEEEeCCCcEEEEEcccccc
Q psy3710 269 EAPLSCIALNQTGTRLATASY-KGTLIRVFDTGSGQKLNELR-------R-----D-SSYLCVSSDHGTVHVFSVDEAQK 334 (424)
Q Consensus 269 ~~~v~~~~~~~~~~~l~~~~~-d~~~i~iwd~~~~~~~~~~~-------~-----~-~~~l~~~~~d~~i~iw~~~~~~~ 334 (424)
-...+.|+|+|++..|+.+.. .+. |..+++........+. | + +.++++....+.|..++..+++.
T Consensus 539 l~~PnGlavd~~~~~LY~aD~~~~~-I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 539 IQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp CSSCCCEEECTTTCCEEEEETTTTE-EEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEE
T ss_pred CCCccEEEEeccCCEEEEEecCCCe-EEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCc
Confidence 345678999998666665554 455 9999986432221111 1 2 23444555567888888777665
Q ss_pred ccc
Q psy3710 335 INK 337 (424)
Q Consensus 335 ~~~ 337 (424)
+..
T Consensus 618 ~~~ 620 (699)
T 1n7d_A 618 VNL 620 (699)
T ss_dssp EEC
T ss_pred eEE
Confidence 443
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.021 Score=55.51 Aligned_cols=272 Identities=12% Similarity=0.068 Sum_probs=148.5
Q ss_pred ceEEEEECCCCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCc
Q psy3710 12 GLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ 91 (424)
Q Consensus 12 ~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~ 91 (424)
.|.++...+++..|-.|+.+|+..++..+.+...........|.++....++...+. + ++-+.+++..+++
T Consensus 192 ~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T--------~~Gl~~~~~~~~~ 262 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-T--------DNGLYVYHNDTTP 262 (758)
T ss_dssp CEEEEEEETTTTEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-E--------TTEEEEECCTTSC
T ss_pred eeEEEEEECCCCEEEEEECCCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-e--------CCceeEEecCCCc
Confidence 488888887776555565567888987665432212222334555555555554443 3 2468888877665
Q ss_pred EEEEEee---------cCCeEEEEecCCc-eEEEeeccEEEEeecCCCceeEEEee-----CCCCCeeEEEeecCCCCeE
Q psy3710 92 VVICLEF---------NAPVKGVRLRRDK-IVVVLEGLIKVYTFIQCPQQLHVFET-----NPNPKGLCVLCPNSNNSLL 156 (424)
Q Consensus 92 ~~~~~~~---------~~~v~~~~~~~~~-~~~~~~~~i~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l 156 (424)
... +.+ ...|.++...+++ ..+++++.+.++... . ....+.. ......+.++....+|.+.
T Consensus 263 ~~~-~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~Gl~~~~~~--~-~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW 338 (758)
T 3ott_A 263 LQH-IIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYGISLSRYN--S-ALQFIPISQITGTGDGNQFYSLFRDSKGFYW 338 (758)
T ss_dssp CEE-ECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSSEEEECCC--C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEE
T ss_pred EEE-EEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCcccccccC--C-ceeEEecccCCCCCCCceEEEEEEcCCCCEE
Confidence 432 221 2358888887766 666664446554322 1 1111111 1112346777777788766
Q ss_pred EEeeccCCeEEEEeCCCCCC-CCcccc-------cccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEE-ec-
Q psy3710 157 AFPGRKSGHVHLVDLADPER-PPLDIA-------AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNEL-RR- 226 (424)
Q Consensus 157 ~~~~~~dg~i~i~d~~~~~~-~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-~~- 226 (424)
+ |..+| +..++..++.. ....+. .....|.++.-.++|+.. .|+ ++. +..+|..+++...-. ..
T Consensus 339 i--Gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt-~~G-L~~~~~~~~~~~~~~~~~~ 412 (758)
T 3ott_A 339 F--GGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLW-IAT-DGS-INRYDYATRQFIHYNIVDN 412 (758)
T ss_dssp E--EETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEE-EEE-TTE-EEEEETTTTEEEEEEEECC
T ss_pred E--eeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEE-EEe-CCc-HhhcCcCCCcEEEeecCCC
Confidence 6 55554 56666554211 111111 112458888887777644 455 456 999999876543221 11
Q ss_pred -------ceeeeeecCCCCeEEEEeecCCeEEEEeCCCC-----CCCC--eee---cc-CCCCeEEEEEcCCCCEEEEEe
Q psy3710 227 -------GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADP-----ERPP--LDI---AA-HEAPLSCIALNQTGTRLATAS 288 (424)
Q Consensus 227 -------~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~-----~~~~--~~~---~~-~~~~v~~~~~~~~~~~l~~~~ 288 (424)
.+..+....++ .+.+ |+..+-+..+|..+. .... ..+ .+ ....|.++...++|++.+.++
T Consensus 413 ~~~~~~~~v~~i~~d~~g-~lWi-gT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~ 490 (758)
T 3ott_A 413 TGTYNTNWTYYIFEDTAG-QLWI-STCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLY 490 (758)
T ss_dssp C--CBSSSEEEEEECTTS-EEEE-EESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEET
T ss_pred cCCCCCceEEEEEEcCCC-CEEE-EECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEcc
Confidence 12233333333 3444 777777888886531 1000 011 01 234589999999988776433
Q ss_pred CCCcEEEEEECCCCcee
Q psy3710 289 YKGTLIRVFDTGSGQKL 305 (424)
Q Consensus 289 ~d~~~i~iwd~~~~~~~ 305 (424)
..+. +..+|..+++..
T Consensus 491 t~~G-l~~~d~~~~~~~ 506 (758)
T 3ott_A 491 NNKG-IDKINPRTREVT 506 (758)
T ss_dssp TCSS-EEEEETTTTEEE
T ss_pred CCCC-cEEEeCCCCceE
Confidence 3455 889998876543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.011 Score=50.91 Aligned_cols=266 Identities=12% Similarity=0.068 Sum_probs=138.6
Q ss_pred CCceEEEEECCCCCeeEeecCCeEEEEeCCcCccccccc----ccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEE
Q psy3710 10 KNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQD----FTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIW 85 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iw 85 (424)
...+.++.|.+++..+++|....| +...+.++.-.... .+...+..+.+.+ +.+.+++ .++.|..
T Consensus 35 ~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~~g-------~~g~i~~- 103 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWIVG-------EPPIMLH- 103 (327)
T ss_dssp SSCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET--TEEEEEE-------ETTEEEE-
T ss_pred CCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC--CeEEEEE-------CCCeEEE-
Confidence 457999999988888887765444 44444443311111 1234567777764 3444444 2455544
Q ss_pred ECCCCcEEEEEe----ecCCeEEEEecCCceEEEe--eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEe
Q psy3710 86 DDLKKQVVICLE----FNAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFP 159 (424)
Q Consensus 86 d~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (424)
....|+.-.... ++..+..+.+.+++.+++. ++. +|.....++........ ....+..+.+.+++.++++
T Consensus 104 S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~--v~~S~DgG~tW~~~~~~-~~~~~~~~~~~~~~~~~~~- 179 (327)
T 2xbg_A 104 TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGA--IYRTKDSGKNWQALVQE-AIGVMRNLNRSPSGEYVAV- 179 (327)
T ss_dssp ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCC--EEEESSTTSSEEEEECS-CCCCEEEEEECTTSCEEEE-
T ss_pred ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCcc--EEEEcCCCCCCEEeecC-CCcceEEEEEcCCCcEEEE-
Confidence 223344333322 2345777877666655554 443 33333234443333322 2234677888888888775
Q ss_pred eccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe-----c--ceeeee
Q psy3710 160 GRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-----R--GLCVLC 232 (424)
Q Consensus 160 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-----~--~~~~~~ 232 (424)
+...+..+-.|-. +..-...-......+..+.+.+++..+ .++.+|. ++..+...++.-..+. . .+..+.
T Consensus 180 g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~-~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~ 256 (327)
T 2xbg_A 180 SSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGK-IAFSDPDNSENWGELLSPLRRNSVGFLDLA 256 (327)
T ss_dssp ETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTE-EEEEETTEEEEECCCBCTTSSCCSCEEEEE
T ss_pred ECCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEE-EEeCCce-EEEecCCCCCeeEeccCCcccCCcceEEEE
Confidence 5443333333321 111111112345678899999988655 4556777 7776433233222221 1 244556
Q ss_pred ecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec---cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEC
Q psy3710 233 PNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA---AHEAPLSCIALNQTGTRLATASYKGTLIRVFDT 299 (424)
Q Consensus 233 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~ 299 (424)
+.+++..++ .+.+|.+ .+..+.++. -..+. .....+.++.|.+++ .+++++.+|. |.-++-
T Consensus 257 ~~~~~~~~~--~g~~g~i-~~S~DgG~t-W~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~-i~~~~~ 320 (327)
T 2xbg_A 257 YRTPNEVWL--AGGAGAL-LCSQDGGQT-WQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGI-LLRYVT 320 (327)
T ss_dssp ESSSSCEEE--EESTTCE-EEESSTTSS-CEECGGGTTSSSCCCEEEEEETT-EEEEECSTTE-EEEECC
T ss_pred ecCCCEEEE--EeCCCeE-EEeCCCCcc-cEEcCccCCCCCCeEEEEEECCC-ceEEEcCCce-EEEEcC
Confidence 666554433 3446766 344443332 22222 234567888887554 4666677887 665543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.012 Score=49.81 Aligned_cols=194 Identities=13% Similarity=0.149 Sum_probs=117.2
Q ss_pred CeEEEEecC-CceEEEe---eccEEEEeecCCCceeEE-Eee----CCCCCeeEEEee---cCCCCeEEEeec-------
Q psy3710 101 PVKGVRLRR-DKIVVVL---EGLIKVYTFIQCPQQLHV-FET----NPNPKGLCVLCP---NSNNSLLAFPGR------- 161 (424)
Q Consensus 101 ~v~~~~~~~-~~~~~~~---~~~i~v~~~~~~~~~~~~-~~~----~~~~~~~~~~~~---~~~~~~l~~~~~------- 161 (424)
-..+++|.+ ++.+.++ .+.|..|+.. .+..... +.. .........+.+ .|+++++++ ..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~-~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv-~~~~~af~~ 91 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPK-TQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAV-MKNAKSFNF 91 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTT-TCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEE-EEETTTTCT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCC-CCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEE-Ecccccccc
Confidence 345678876 4455554 7899999975 3332222 211 111224568888 688777775 33
Q ss_pred ------cCCeEEEEeCC---CCCCCCcccc--cc-----------cCCeEEEEEccCCCEEEEEecC-CcEEEEEECCCc
Q psy3710 162 ------KSGHVHLVDLA---DPERPPLDIA--AH-----------EAPLSCIALNQTGTRLATASYK-GTLIRVFDTGSG 218 (424)
Q Consensus 162 ------~dg~i~i~d~~---~~~~~~~~~~--~~-----------~~~v~~~~~~~~~~~l~~~~~d-~~~i~iwd~~~~ 218 (424)
.+..|..||+. ++ +.+.... .. ......++..++|+..++++.. +. |...+....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg-~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~-I~rV~pdG~ 169 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENS-KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA-IARVSADGK 169 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTC-CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE-EEEECTTSC
T ss_pred cccccCCCCEEEEEcCCcCCCC-CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe-EEEEeCCCC
Confidence 26789999998 55 4433221 11 1247899999999999999888 87 777776533
Q ss_pred ceeeEEe---------cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec--cC---CCCeEEE-EEcCCCCE
Q psy3710 219 QKLNELR---------RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA--AH---EAPLSCI-ALNQTGTR 283 (424)
Q Consensus 219 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~--~~---~~~v~~~-~~~~~~~~ 283 (424)
.+..+. .+...+++.|++..+++..+ .|.+..+|+.........+. +. -.....| ..-.+|+.
T Consensus 170 -~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~v 247 (334)
T 2p9w_A 170 -TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNES 247 (334)
T ss_dssp -CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred -EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEE
Confidence 222221 12457899999999999777 99999999985332111111 21 1223443 33347777
Q ss_pred -EEEEeCCCcEEEEEECCC
Q psy3710 284 -LATASYKGTLIRVFDTGS 301 (424)
Q Consensus 284 -l~~~~~d~~~i~iwd~~~ 301 (424)
|++....+. +.+.+...
T Consensus 248 llV~~~~~~~-~~l~S~Dg 265 (334)
T 2p9w_A 248 VLVGARAPYA-ISFRSWDN 265 (334)
T ss_dssp EEEEEETTEE-EEEECSST
T ss_pred EEEEcCCCCE-EEEECCCC
Confidence 444555555 66665544
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0071 Score=52.25 Aligned_cols=179 Identities=11% Similarity=0.073 Sum_probs=101.7
Q ss_pred eccEEEEeecCCCceeEEEeeCC-----CCCeeEEEeecC--CCC-eEEEeecc--CCeEEEEeCCCCCCCCc---cccc
Q psy3710 117 EGLIKVYTFIQCPQQLHVFETNP-----NPKGLCVLCPNS--NNS-LLAFPGRK--SGHVHLVDLADPERPPL---DIAA 183 (424)
Q Consensus 117 ~~~i~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~-~l~~~~~~--dg~i~i~d~~~~~~~~~---~~~~ 183 (424)
+|.|.++|.+........+.... .......+.+.+ ++. +|+++-.. +..|.+|+++....... .+.+
T Consensus 82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g 161 (355)
T 3sre_A 82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 161 (355)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecccc
Confidence 67788888752222222322211 111233344433 443 34442333 56888888775422222 2222
Q ss_pred c-cCCeEEEEEccCCCEEEEEe-----------------cCCcEEEEEECCCcceeeEEe---cceeeeeecCCCCeEEE
Q psy3710 184 H-EAPLSCIALNQTGTRLATAS-----------------YKGTLIRVFDTGSGQKLNELR---RGLCVLCPNSNNSLLAF 242 (424)
Q Consensus 184 ~-~~~v~~~~~~~~~~~l~~~~-----------------~d~~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 242 (424)
. -...+.+++.++|...++.. ..+. |.-+|. ++. ..+. .-.+.++++|+++.+++
T Consensus 162 ~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~-vyr~d~--~~~-~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 162 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSF-VTYYSP--NDV-RVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEE-EEEECT--TCC-EEEEEEESSEEEEEECTTSSEEEE
T ss_pred CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccE-EEEEEC--CeE-EEeecCCcccCcceECCCCCEEEE
Confidence 1 23578999999998777654 1234 555554 322 2222 23677999999999999
Q ss_pred EeecCCeEEEEeCCCCCCC--CeeeccCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEECC
Q psy3710 243 PGRKSGHVHLVDLADPERP--PLDIAAHEAPLSCIALNQ-TGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 243 ~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~~i~iwd~~ 300 (424)
+-+..+.|+.|++...... ...+ ......-.+++++ +|++.+++..++..|..|+..
T Consensus 238 adt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred EeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 8888999999998743221 1122 2345677889998 588777776554214444443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.017 Score=48.89 Aligned_cols=138 Identities=9% Similarity=0.131 Sum_probs=81.7
Q ss_pred CCCCeEEEeec-cCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEecC--------------CcEEEEEEC
Q psy3710 151 SNNSLLAFPGR-KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK--------------GTLIRVFDT 215 (424)
Q Consensus 151 ~~~~~l~~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------~~~i~iwd~ 215 (424)
.++..|..+.. .++.|...+.+. .....+... .+-.++++|++|+-+... .. |+..++
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg--~~~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~-Iy~i~~ 95 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDG--SNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNS-LCRIKR 95 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTS--CSCEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEE-EEEEET
T ss_pred EeCCEEEEEeCCCCceEEEEcCCC--CCCEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCe-EEEEeC
Confidence 35777776332 345566666554 334444322 134557889988877653 35 777888
Q ss_pred CCcceeeEEecceeeeeecCCCCeEEEEe---ecCCeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEeC-CC
Q psy3710 216 GSGQKLNELRRGLCVLCPNSNNSLLAFPG---RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY-KG 291 (424)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~ 291 (424)
...+... +... ....+++.++.++++. .....|+..++.... ...+..+.. .+++|+++.|+-.+. ..
T Consensus 96 dg~~~~~-l~~~-~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 96 NGHGSTV-LDPD-PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp TSCCCEE-EECS-CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred CCCcceE-eecC-CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 7665333 2222 2236677899998865 345567777776433 333333332 456788888887665 45
Q ss_pred cEEEEEECCCCce
Q psy3710 292 TLIRVFDTGSGQK 304 (424)
Q Consensus 292 ~~i~iwd~~~~~~ 304 (424)
. |.+.++..+..
T Consensus 168 ~-Iy~~~l~g~~~ 179 (302)
T 3s25_A 168 Q-LYRYDTASQSE 179 (302)
T ss_dssp C-EEEEETTTTEE
T ss_pred e-EEEEECCCCCE
Confidence 5 88888876543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.054 Score=51.02 Aligned_cols=276 Identities=12% Similarity=0.015 Sum_probs=149.1
Q ss_pred CceEEEEECCCCCeeEe-ecCCe-EEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECC
Q psy3710 11 NGLLYAGFNQDQGCFAC-GMEDG-FRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDL 88 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la~-g~~~~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~ 88 (424)
.....+++.+.+..|.. -...+ |.+.+.+..............-..+++.|....+..+..+ ....|...++.
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g-----~~~~I~r~~~d 158 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-----EVPKIERAGMD 158 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS-----SSCEEEEEETT
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC-----CCCEEEEEECC
Confidence 45778999986665554 44444 9999987544322221223345678888887777776643 14677777764
Q ss_pred CCcEEEEEe-ecCCeEEEEecCCc-eEEEe---eccEEEEeecCCCceeEEEe-eCCCCCeeEEEeecCCCCeEEEeecc
Q psy3710 89 KKQVVICLE-FNAPVKGVRLRRDK-IVVVL---EGLIKVYTFIQCPQQLHVFE-TNPNPKGLCVLCPNSNNSLLAFPGRK 162 (424)
Q Consensus 89 ~~~~~~~~~-~~~~v~~~~~~~~~-~~~~~---~~~i~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (424)
......... .-.....+++.++. .+..+ .+.|..+++. ......... ...+|. .+++..+ .++.+-..
T Consensus 159 G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d-G~~~~~~~~~~~~~P~---gi~~~~~--~ly~td~~ 232 (619)
T 3s94_A 159 GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD-GTNRQAVVKGSLPHPF---ALTLFED--ILYWTDWS 232 (619)
T ss_dssp SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS-CCEEC---------CC---CEEESSS--EEEEECTT
T ss_pred CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC-CCccEEEEeCCCCCce---EEEEeCC--EEEEecCC
Confidence 332222222 33467899999754 44444 4578888875 222211122 122232 3344433 55554666
Q ss_pred CCeEEEEeCCCCCCCCccccc-----------cc--------------CCeEEEEE-----------ccCC---------
Q psy3710 163 SGHVHLVDLADPERPPLDIAA-----------HE--------------APLSCIAL-----------NQTG--------- 197 (424)
Q Consensus 163 dg~i~i~d~~~~~~~~~~~~~-----------~~--------------~~v~~~~~-----------~~~~--------- 197 (424)
.+.|...|..++.. ...+.. |. +....+++ .|.|
T Consensus 233 ~~~V~~~d~~tg~~-~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~ 311 (619)
T 3s94_A 233 THSILACNKYTGEG-LREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKT 311 (619)
T ss_dssp TCSEEEEESSSCCC-CEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSC
T ss_pred CCEEEEEECCCCcc-cEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcc
Confidence 77888888765521 111100 00 00111111 1111
Q ss_pred -----C-EEEEEecCCcEEEEEECCCcceee-EEe----cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec
Q psy3710 198 -----T-RLATASYKGTLIRVFDTGSGQKLN-ELR----RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA 266 (424)
Q Consensus 198 -----~-~l~~~~~d~~~i~iwd~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~ 266 (424)
+ +|+.+ ..+. |+..++....... .++ .....+.+++.++.++++-...+.|+.+++..... ...+.
T Consensus 312 C~~~~~~~Ll~~-~~~~-i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~-~~v~~ 388 (619)
T 3s94_A 312 CKDGATELLLLA-RRTD-LRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS-QFVVT 388 (619)
T ss_dssp BCSSCSEEEEEE-ESSC-EEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC
T ss_pred cCCCCceEEEEE-cccc-eEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc-EEEEE
Confidence 1 23322 3344 6767776543211 111 12456778888888888777788999999876432 22222
Q ss_pred cCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEECCCC
Q psy3710 267 AHEAPLSCIALNQTGTRLATA-SYKGTLIRVFDTGSG 302 (424)
Q Consensus 267 ~~~~~v~~~~~~~~~~~l~~~-~~d~~~i~iwd~~~~ 302 (424)
..-.....+++++.+..|+.+ +..+. |.+.++...
T Consensus 389 ~~~~~p~GlAvD~~~~~lY~tD~~~~~-I~v~~~~G~ 424 (619)
T 3s94_A 389 AQIAHPDGIAVDWVARNLYWTDTGTDR-IEVTRLNGT 424 (619)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTE-EEEEETTSC
T ss_pred CCCCCcCceEEecccCcEEEEeCCCCc-EEEEeCCCC
Confidence 333567889999755555544 45566 999988754
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.009 Score=50.50 Aligned_cols=154 Identities=8% Similarity=0.096 Sum_probs=100.4
Q ss_pred EEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCccccc----cc--CCeEEEEE---ccCCCEEEEEec-----------
Q psy3710 146 VLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAA----HE--APLSCIAL---NQTGTRLATASY----------- 205 (424)
Q Consensus 146 ~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~----~~--~~v~~~~~---~~~~~~l~~~~~----------- 205 (424)
+..|++....+.++.-..+.|..||...+......+.. .. ..+..|.| .|+++++++...
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence 45777766666663557899999998753211112221 11 13579999 688777775432
Q ss_pred --CCcEEEEEECC---CcceeeEEec----------------ceeeeeecCCCCeEEEEeecC-CeEEEEeCCCCCCCCe
Q psy3710 206 --KGTLIRVFDTG---SGQKLNELRR----------------GLCVLCPNSNNSLLAFPGRKS-GHVHLVDLADPERPPL 263 (424)
Q Consensus 206 --d~~~i~iwd~~---~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~d-g~i~i~d~~~~~~~~~ 263 (424)
+.. |..+|+. +++.+..... ...-++..++|+.++. ++.. +.|..++.........
T Consensus 97 ~g~~~-v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt-~s~~~~~I~rV~pdG~~~~~~ 174 (334)
T 2p9w_A 97 HGASS-FHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA-FALGMPAIARVSADGKTVSTF 174 (334)
T ss_dssp SSCCE-EEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE-EEESSCEEEEECTTSCCEEEE
T ss_pred CCCCE-EEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe-CCCCCCeEEEEeCCCCEEeee
Confidence 567 9999998 7777655441 2456788888877765 6666 7777777664321111
Q ss_pred ee----ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCC
Q psy3710 264 DI----AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG 302 (424)
Q Consensus 264 ~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~ 302 (424)
.+ .......+.|+++|+|+.|++....+. +..+|+.+.
T Consensus 175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~-L~~fD~~~p 216 (334)
T 2p9w_A 175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRA-LTAFDVSKP 216 (334)
T ss_dssp EECCCCSSSCCSCSEEEEETTTTEEEEESSSSS-EEEEECSSS
T ss_pred eecCCCcccccCcceEEEeCCCCEEEEEcCCCe-EEEEcCCCC
Confidence 11 112234679999999998888877888 999997743
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.046 Score=46.36 Aligned_cols=184 Identities=9% Similarity=0.025 Sum_probs=86.9
Q ss_pred CceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeec--CCeEEEEecCCceEEEe------eccEEEEeecCCCceeEE
Q psy3710 63 CNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFN--APVKGVRLRRDKIVVVL------EGLIKVYTFIQCPQQLHV 134 (424)
Q Consensus 63 ~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~------~~~i~v~~~~~~~~~~~~ 134 (424)
.+.+++.+|.. ....+.+||..+++-...-..+ ..-.++....+..+++. -..+.+||.. +.+. ..
T Consensus 11 ~~~l~~~GG~~----~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~-~~~W-~~ 84 (306)
T 3ii7_A 11 HDYRIALFGGS----QPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVV-KDSW-YS 84 (306)
T ss_dssp CCEEEEEECCS----STTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETT-TTEE-EE
T ss_pred cceEEEEeCCC----CCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCC-CCeE-EE
Confidence 35666676643 2468999999887654322211 11123333344444443 1467788875 3322 22
Q ss_pred EeeCCCCC-eeEEEeecCCCCeEEEeeccC------CeEEEEeCCCCCC-CCcccccccCCeEEEEEccCCCEEEEEec-
Q psy3710 135 FETNPNPK-GLCVLCPNSNNSLLAFPGRKS------GHVHLVDLADPER-PPLDIAAHEAPLSCIALNQTGTRLATASY- 205 (424)
Q Consensus 135 ~~~~~~~~-~~~~~~~~~~~~~l~~~~~~d------g~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 205 (424)
+.....+. ...+... +++.+++ |+.+ ..+.+||..+..- .+..+...... .+++. -+++.++.|+.
T Consensus 85 ~~~~p~~r~~~~~~~~--~~~iyv~-GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~ 159 (306)
T 3ii7_A 85 KLGPPTPRDSLAACAA--EGKIYTS-GGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCS-HGMVE-ANGLIYVCGGSL 159 (306)
T ss_dssp EECCSSCCBSCEEEEE--TTEEEEE-CCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEECCEE
T ss_pred CCCCCccccceeEEEE--CCEEEEE-CCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcce-eEEEE-ECCEEEEECCCC
Confidence 22222121 1222222 5666666 7655 4688899876410 00001101111 11222 25566666653
Q ss_pred --------CCcEEEEEECCCcceeeE--Eeccee-eeeecCCCCeEEEEeecC-----CeEEEEeCCCCC
Q psy3710 206 --------KGTLIRVFDTGSGQKLNE--LRRGLC-VLCPNSNNSLLAFPGRKS-----GHVHLVDLADPE 259 (424)
Q Consensus 206 --------d~~~i~iwd~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~ 259 (424)
-.. +.+||+.+.+-... ++.+.. ..+...++ .+++.|+.+ ..+.+||+.+.+
T Consensus 160 ~~~~~~~~~~~-~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 160 GNNVSGRVLNS-CEVYDPATETWTELCPMIEARKNHGLVFVKD-KIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp SCTTTCEECCC-EEEEETTTTEEEEECCCSSCCBSCEEEEETT-EEEEECCEETTEEBCCEEEEETTTTE
T ss_pred CCCCcccccce-EEEeCCCCCeEEECCCccchhhcceEEEECC-EEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 345 88999987643222 221111 11111233 444445543 468889987753
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.06 Score=46.72 Aligned_cols=137 Identities=12% Similarity=0.095 Sum_probs=74.1
Q ss_pred eeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcE--EEEEe----ecCCeEEEEecCC----ce-EEEee-----
Q psy3710 54 LGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQV--VICLE----FNAPVKGVRLRRD----KI-VVVLE----- 117 (424)
Q Consensus 54 i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~----~~~~v~~~~~~~~----~~-~~~~~----- 117 (424)
-..+++.|+++.+++ . .++.|.+++ +++. +..+. .......++++|+ +. +++..
T Consensus 33 P~~ia~~pdG~l~V~-e-------~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~ 102 (352)
T 2ism_A 33 PWALAFLPDGGMLIA-E-------RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGG 102 (352)
T ss_dssp EEEEEECTTSCEEEE-E-------TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTS
T ss_pred ceEEEEcCCCeEEEE-e-------CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCC
Confidence 457899999985444 3 258999998 4432 22221 1356899999998 43 44332
Q ss_pred --ccEEEEeecCCCc-----e-eEEEee-CCCCCeeEEEeecCCCCeEEEeecc------------CCeEEEEeCCCCC-
Q psy3710 118 --GLIKVYTFIQCPQ-----Q-LHVFET-NPNPKGLCVLCPNSNNSLLAFPGRK------------SGHVHLVDLADPE- 175 (424)
Q Consensus 118 --~~i~v~~~~~~~~-----~-~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~------------dg~i~i~d~~~~~- 175 (424)
+.|..|+.. ... . +..+.. .........+.+.|||.+.++.|.. .|.|.-++.+..-
T Consensus 103 ~~~~v~r~~~~-~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p 181 (352)
T 2ism_A 103 LRNQVVRLRHL-GERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPA 181 (352)
T ss_dssp SEEEEEEEEEC-SSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBC
T ss_pred CccEEEEEEeC-CCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCC
Confidence 667778775 221 1 111221 0111123467889999766653321 2567666665310
Q ss_pred -----------CCCcccccccCCeEEEEEcc-CCCEEEE
Q psy3710 176 -----------RPPLDIAAHEAPLSCIALNQ-TGTRLAT 202 (424)
Q Consensus 176 -----------~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 202 (424)
.......++ .....++|+| ++.++++
T Consensus 182 ~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~ 219 (352)
T 2ism_A 182 PGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSS 219 (352)
T ss_dssp TTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEE
T ss_pred CCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEE
Confidence 011111123 2356889999 5554444
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.06 Score=46.21 Aligned_cols=229 Identities=12% Similarity=0.081 Sum_probs=113.3
Q ss_pred CCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEee-----cCCeEEEEecCCceEEEe-eccEEEEee
Q psy3710 52 GGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEF-----NAPVKGVRLRRDKIVVVL-EGLIKVYTF 125 (424)
Q Consensus 52 ~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~-~~~i~v~~~ 125 (424)
..+..+.+...+..++ ++ .++.|. .....|+.-..... ...+.++.+.++..+++. .+. +|..
T Consensus 36 ~~~~~v~~~~~~~~~~-~G-------~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~--i~~S 104 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWL-VG-------VNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPI--MLHT 104 (327)
T ss_dssp SCEEEEEESSSSCEEE-EE-------TTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTE--EEEE
T ss_pred CcEEEEEECCCCcEEE-Ec-------CCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCe--EEEE
Confidence 3566777765555555 45 246553 33333433222221 336788999875555444 343 3333
Q ss_pred cCCCceeEEEeeC-CCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCCEEEEEe
Q psy3710 126 IQCPQQLHVFETN-PNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS 204 (424)
Q Consensus 126 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 204 (424)
...++........ ..+.....+.+.+++..+++ + .+|.|.. ..+.+..-......+...+..+++.|++.+++.+.
T Consensus 105 ~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~ 181 (327)
T 2xbg_A 105 TDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMI-T-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS 181 (327)
T ss_dssp SSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEE-E-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET
T ss_pred CCCCCCceECccccCCCCCeEEEEEECCCCEEEE-e-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC
Confidence 3234443333321 11223555666666666654 4 4554432 12222111112223456788999999887776654
Q ss_pred cCCcEEEEEEC--CCcceeeEE-ecceeeeeecCCCCeEEEEeecCCeEEEEeCCCCCC--CCeee-ccCCCCeEEEEEc
Q psy3710 205 YKGTLIRVFDT--GSGQKLNEL-RRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER--PPLDI-AAHEAPLSCIALN 278 (424)
Q Consensus 205 ~d~~~i~iwd~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~--~~~~~-~~~~~~v~~~~~~ 278 (424)
++...+-.|- .+-+.+... ......+.+.+++..++ .+.+|.+++.+...++. ....- ..+...+.++++.
T Consensus 182 -~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~--~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~ 258 (327)
T 2xbg_A 182 -RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWM--IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR 258 (327)
T ss_dssp -TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEE--EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred -CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEE--EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence 4441444442 222322111 12345566677765443 45678877764221110 01100 0123458899999
Q ss_pred CCCCEEEEEeCCCcEEEEEECC
Q psy3710 279 QTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 279 ~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
+++..++.+. ++. | .+...
T Consensus 259 ~~~~~~~~g~-~g~-i-~~S~D 277 (327)
T 2xbg_A 259 TPNEVWLAGG-AGA-L-LCSQD 277 (327)
T ss_dssp SSSCEEEEES-TTC-E-EEESS
T ss_pred CCCEEEEEeC-CCe-E-EEeCC
Confidence 8877666554 665 5 34443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.04 Score=46.61 Aligned_cols=227 Identities=9% Similarity=0.015 Sum_probs=104.7
Q ss_pred CCCeeEeec-CC------eEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCc--
Q psy3710 21 DQGCFACGM-ED------GFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ-- 91 (424)
Q Consensus 21 ~g~~la~g~-~~------~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~-- 91 (424)
++.+++.|+ .+ .+.+||..+.+-......+........... ++.+.+.++.... ..-..+.+||..+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~-~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HDRIYVIGGYDGR-SRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSS-CBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE-CCEEEEEcCCCCC-ccCceEEEEECCCCCCC
Confidence 455666665 22 288999877654332222222222222333 3455555553211 123578999988876
Q ss_pred -EEEEEe--ecCCeEEEEecCCceEEEe-------eccEEEEeecCCCceeEEEeeCCCCCe-eEEEeecCCCCeEEEee
Q psy3710 92 -VVICLE--FNAPVKGVRLRRDKIVVVL-------EGLIKVYTFIQCPQQLHVFETNPNPKG-LCVLCPNSNNSLLAFPG 160 (424)
Q Consensus 92 -~~~~~~--~~~~v~~~~~~~~~~~~~~-------~~~i~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 160 (424)
-...-. ....-.++....+..+++. ...+.+||.. +.+- ..+.....+.. ..+... +++.+++ |
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~-~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~-G 166 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPN-IDQW-SMLGDMQTAREGAGLVVA--SGVIYCL-G 166 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETT-TTEE-EEEEECSSCCBSCEEEEE--TTEEEEE-C
T ss_pred eeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCC-CCeE-EECCCCCCCcccceEEEE--CCEEEEE-C
Confidence 333222 1111222333333344432 1357888875 3322 22222222211 222222 5666666 7
Q ss_pred ccC-----CeEEEEeCCCCCCC-CcccccccCCeEEEEEccCCCEEEEEecC-----CcEEEEEECCCcceeeE--Eecc
Q psy3710 161 RKS-----GHVHLVDLADPERP-PLDIAAHEAPLSCIALNQTGTRLATASYK-----GTLIRVFDTGSGQKLNE--LRRG 227 (424)
Q Consensus 161 ~~d-----g~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~~i~iwd~~~~~~~~~--~~~~ 227 (424)
+.+ ..+.+||+.+..-. +..+......-..+.+ +++.++.|+.+ .. +.+||+.+.+-... ++.+
T Consensus 167 G~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~W~~~~~~p~~ 243 (301)
T 2vpj_A 167 GYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSS-VEAYNIRTDSWTTVTSMTTP 243 (301)
T ss_dssp CBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTEEEEECCCSSC
T ss_pred CCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccce-EEEEeCCCCcEEECCCCCCc
Confidence 654 46888998764100 0001111111122222 56677777654 45 89999987653322 1111
Q ss_pred e-eeeeecCCCCeEEEEeecC-----CeEEEEeCCCC
Q psy3710 228 L-CVLCPNSNNSLLAFPGRKS-----GHVHLVDLADP 258 (424)
Q Consensus 228 ~-~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~ 258 (424)
. ...+...++ .+++.|+.+ ..+.+||+.+.
T Consensus 244 r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 244 RCYVGATVLRG-RLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp CBSCEEEEETT-EEEEECCBCSSSBEEEEEEEETTTT
T ss_pred ccceeEEEECC-EEEEEcCcCCCcccccEEEEcCCCC
Confidence 1 111111233 344445544 45777887654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.026 Score=57.14 Aligned_cols=197 Identities=16% Similarity=0.225 Sum_probs=120.1
Q ss_pred EEECCCCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC-CcEEE
Q psy3710 16 AGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK-KQVVI 94 (424)
Q Consensus 16 ~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~-~~~~~ 94 (424)
.-.+|..+.+|.-....+.|||+++...+..... ...|..=.|. +.+.++.++ +..|.-|++.. ..+++
T Consensus 71 AIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWi-s~~~l~lVT--------~~aVyHW~~~~~s~P~k 140 (1630)
T 1xi4_A 71 AIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWI-SLNTVALVT--------DNAVYHWSMEGESQPVK 140 (1630)
T ss_pred hccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEec-CCCeeEEEc--------CCeEEEeccCCCCccHH
Confidence 3467888888877655599999999888777776 3455444444 456677777 57999999963 23333
Q ss_pred EEe-e----cCCeEEEEecCCceEEEe----------eccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEe
Q psy3710 95 CLE-F----NAPVKGVRLRRDKIVVVL----------EGLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFP 159 (424)
Q Consensus 95 ~~~-~----~~~v~~~~~~~~~~~~~~----------~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (424)
.+. | ...|..-..+++..+++. .|.+.+|+.+ .+..+.+++|.....-..+.-++....+++.
T Consensus 141 ~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e--r~~sQ~iegha~~F~~~~~~~~~~~~~l~~f 218 (1630)
T 1xi4_A 141 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPIEGHAASFAQFKMEGNAEESTLFCF 218 (1630)
T ss_pred HHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc--cccchhhhHhHhhhheeccCCCCCCceEEEE
Confidence 333 2 345666677788766552 5889999985 3444445555432211111112222222221
Q ss_pred ecc---CCeEEEEeCCCC--CCCCc------ccc---cccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe
Q psy3710 160 GRK---SGHVHLVDLADP--ERPPL------DIA---AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR 225 (424)
Q Consensus 160 ~~~---dg~i~i~d~~~~--~~~~~------~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~ 225 (424)
+.. .+.++|-++... ..+.. .+. .-.+-..++..++.-..+...+.-|. +.++|+.++.++..-+
T Consensus 219 ~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~-~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYMNR 297 (1630)
T ss_pred EEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCce-EEEEecccchhhhhcc
Confidence 222 368888888543 11111 010 12334456777777778888888998 9999999998876544
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.056 Score=45.65 Aligned_cols=174 Identities=9% Similarity=0.038 Sum_probs=80.9
Q ss_pred CCeEEEEECCCCcEEEEEeec--CCeEEEEecCCceEEEe-------eccEEEEeecCCCc--eeEEEeeCCCCC-eeEE
Q psy3710 79 NNRVMIWDDLKKQVVICLEFN--APVKGVRLRRDKIVVVL-------EGLIKVYTFIQCPQ--QLHVFETNPNPK-GLCV 146 (424)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~-------~~~i~v~~~~~~~~--~~~~~~~~~~~~-~~~~ 146 (424)
-..+.++|..+++-...-..+ ..-.++....+..+++. ...+.+||.. +.+ ....+.....+. ...+
T Consensus 30 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~-~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 30 IDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYT-ADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETT-CCTTCCCEEECCCSSCCBSCEE
T ss_pred eeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECC-CCCCCeeEECCCCCCCccceeE
Confidence 357889998877644322211 11123333344444443 1468888875 333 022222111111 1122
Q ss_pred EeecCCCCeEEEeeccC-----CeEEEEeCCCCCCC-CcccccccCCeEEEEEccCCCEEEEEecC-----CcEEEEEEC
Q psy3710 147 LCPNSNNSLLAFPGRKS-----GHVHLVDLADPERP-PLDIAAHEAPLSCIALNQTGTRLATASYK-----GTLIRVFDT 215 (424)
Q Consensus 147 ~~~~~~~~~l~~~~~~d-----g~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~~i~iwd~ 215 (424)
... +++.+++ |+.+ ..+.+||..+..-. +..+...... .+++. .+++.++.|+.+ .. +.+||+
T Consensus 109 ~~~--~~~lyv~-GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~-~~~~d~ 182 (301)
T 2vpj_A 109 TTL--GDMIYVS-GGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG-AGLVV-ASGVIYCLGGYDGLNILNS-VEKYDP 182 (301)
T ss_dssp EEE--TTEEEEE-CCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS-CEEEE-ETTEEEEECCBCSSCBCCC-EEEEET
T ss_pred EEE--CCEEEEE-cccCCCcccceEEEEcCCCCeEEECCCCCCCccc-ceEEE-ECCEEEEECCCCCCcccce-EEEEeC
Confidence 222 5666665 6643 36888898764100 0011111111 12222 256677777654 45 889998
Q ss_pred CCcceeeE--EecceeeeeecCCCCeEEEEeecC-----CeEEEEeCCCCC
Q psy3710 216 GSGQKLNE--LRRGLCVLCPNSNNSLLAFPGRKS-----GHVHLVDLADPE 259 (424)
Q Consensus 216 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~ 259 (424)
.+.+-... ++.+....+....+..+++.|+.+ ..+.+||+.+.+
T Consensus 183 ~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 183 HTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp TTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 77643322 221111111111134555556653 568899987654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.085 Score=44.55 Aligned_cols=211 Identities=10% Similarity=0.073 Sum_probs=116.1
Q ss_pred EeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeecCCeEEEEecCCceEEEe----e-------------ccEE
Q psy3710 59 MLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL----E-------------GLIK 121 (424)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~-------------~~i~ 121 (424)
++++++.+.+.... .++.|...+..... ...+.- ..+ --+++++..+.. + ..|+
T Consensus 21 ~~~~g~~iy~~n~~-----d~~~ly~~~~dg~~-~~~l~~-~~~--~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy 91 (302)
T 3s25_A 21 FCESDGEVFFSNTN-----DNGRLYAMNIDGSN-IHKLSN-DTA--MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLC 91 (302)
T ss_dssp EEEETTEEEEEEGG-----GTTEEEEEETTSCS-CEEEEE-EEE--EEEEECSSEEEEEEECC------CCSSCCSEEEE
T ss_pred EEEeCCEEEEEeCC-----CCceEEEEcCCCCC-CEEccC-Cce--eeEEEcCCEEEEEECCCCcccccceeccCCCeEE
Confidence 34677888777643 25677777764333 333331 112 234556544443 1 2344
Q ss_pred EEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEee---ccCCeEEEEeCCCCCCCCcccccccCCeEEEEEccCCC
Q psy3710 122 VYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPG---RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGT 198 (424)
Q Consensus 122 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 198 (424)
..++. +.....+.... ...++++++.|+.+. .....|...++.. .....+..+.. .+++++++
T Consensus 92 ~i~~d--g~~~~~l~~~~------~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG--s~~~~lt~~~~----~~~~~~g~ 157 (302)
T 3s25_A 92 RIKRN--GHGSTVLDPDP------CIYASLIGNYIYYLHYDTQTATSLYRIRIDG--EEKKKIKNHYL----FTCNTSDR 157 (302)
T ss_dssp EEETT--SCCCEEEECSC------EEEEEEETTEEEEEEESSSSCEEEEEEETTS--CCCEEEESSCC----CCSEEETT
T ss_pred EEeCC--CCcceEeecCC------ccEEEEeCCEEEEEeecCCCCceEEEEECCC--CCeEEEeCCCc----eEeeEECC
Confidence 44543 33333333221 124566888998833 2334555555554 33444444432 45678888
Q ss_pred EEEEEec-CCcEEEEEECCCcceeeEEecceeeeeecCCCCeEEEEeecC-CeEEEEeCCCCCCCCeeeccCCCCeEEEE
Q psy3710 199 RLATASY-KGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKS-GHVHLVDLADPERPPLDIAAHEAPLSCIA 276 (424)
Q Consensus 199 ~l~~~~~-d~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 276 (424)
.|+-.+. ... |...++..+.....+..... ..+.|.++.++++...+ ..|..-++..... ..+. ...+ ..
T Consensus 158 ~iy~t~~g~~~-Iy~~~l~g~~~~~l~~~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~--~~Lt--~~~~--~~ 229 (302)
T 3s25_A 158 YFYYNNPKNGQ-LYRYDTASQSEALFYDCNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP--VVLT--EANI--EH 229 (302)
T ss_dssp EEEEECTTTCC-EEEEETTTTEEEEEECSCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC--EECS--CSCE--EE
T ss_pred EEEEEeCCCce-EEEEECCCCCEEEEeCCCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe--EEEe--CCCc--ce
Confidence 8886665 566 88888876655444443332 34668999998865444 4677777776542 2222 2233 34
Q ss_pred EcCCCCEEEEEeC--CCcEEEEEECCC
Q psy3710 277 LNQTGTRLATASY--KGTLIRVFDTGS 301 (424)
Q Consensus 277 ~~~~~~~l~~~~~--d~~~i~iwd~~~ 301 (424)
|+|++++|+.++. ... |..-++..
T Consensus 230 ~~~~g~~Iy~~~~~~~~~-i~~~~~DG 255 (302)
T 3s25_A 230 YNVYGSLIFYQRGGDNPA-LCVVKNDG 255 (302)
T ss_dssp EEEETTEEEEEECSSSCE-EEEEETTS
T ss_pred EEECCCEEEEEECCCCcE-EEEEECCC
Confidence 7888888876533 233 66666653
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.09 Score=46.03 Aligned_cols=149 Identities=13% Similarity=0.220 Sum_probs=92.0
Q ss_pred eEEEeeccEEEEeecCCCceeEEEeeCC--CCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCc----------
Q psy3710 112 IVVVLEGLIKVYTFIQCPQQLHVFETNP--NPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPL---------- 179 (424)
Q Consensus 112 ~~~~~~~~i~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~---------- 179 (424)
.+++.++.||.-++. .....+.+.... .-..+..+..+|+|.+||.. .+..|.|..+..+.....
T Consensus 35 i~~a~~n~iR~~~i~-~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~--g~~~V~Vv~LP~~~~~~~~~~~~~~~q~ 111 (452)
T 3pbp_A 35 IVFIQDNIIRWYNVL-TDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF--NDNEIFVMEVPWGYSNVEDVSIQDAFQI 111 (452)
T ss_dssp EEEEETTEEEEEETT-TCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE--CSSEEEEEECCTTCSCCCCHHHHHTTEE
T ss_pred EEEEECCEEEEEECC-CCCcceEEecCcccccCceeEEEECCCCCEEEEe--cCCeEEEEEecCccccCcccccccccce
Confidence 333447788888875 233455555542 11135668889999999983 455888888874321111
Q ss_pred -cccc------ccCCeEEEEEccC---CCEEEEEecCCcEEEEEECCCcc--eeeEEecceeeeeecCCCCeEEEEeecC
Q psy3710 180 -DIAA------HEAPLSCIALNQT---GTRLATASYKGTLIRVFDTGSGQ--KLNELRRGLCVLCPNSNNSLLAFPGRKS 247 (424)
Q Consensus 180 -~~~~------~~~~v~~~~~~~~---~~~l~~~~~d~~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d 247 (424)
.+.- ...+|..+.|+|- +..|++-..|+. |++||+.... +. .++.. .+
T Consensus 112 ~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~-Ir~yDl~~s~~~P~-~L~k~---------~~--------- 171 (452)
T 3pbp_A 112 FHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDT-ITMFDILNSQEKPI-VLNKP---------NN--------- 171 (452)
T ss_dssp EEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSC-EEEEETTCTTSCCE-EESCC---------CS---------
T ss_pred eEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCE-EEEEEcccCCCCCc-chhcc---------cc---------
Confidence 1111 2577999999994 568999999999 9999997632 11 22110 00
Q ss_pred CeEEEEeCCCCCCCCeeeccCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEE
Q psy3710 248 GHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATAS--YKGTLIRVFD 298 (424)
Q Consensus 248 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~~i~iwd 298 (424)
...+......|.+++|.+++-.|...+ ..|. |+-.-
T Consensus 172 --------------~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GD-IYAlc 209 (452)
T 3pbp_A 172 --------------SFGLDARVNDITDLEFSKDGLTLYCLNTTEGGD-IFAFY 209 (452)
T ss_dssp --------------EEESCSSCCCEEEEEECTTSSCEEEEECTTSCE-EEEES
T ss_pred --------------ccCCCcccceEEEEEEcCCCcEEEEEecCCCCC-EEEEC
Confidence 001113446788999999887666654 6676 55443
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.096 Score=45.87 Aligned_cols=142 Identities=13% Similarity=0.144 Sum_probs=90.9
Q ss_pred ECCCCCeeEeecCCeEEEEeCCcCccccccccc----CCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCc--
Q psy3710 18 FNQDQGCFACGMEDGFRIYNCDPLKEKERQDFT----DGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQ-- 91 (424)
Q Consensus 18 ~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~-- 91 (424)
...+|..++.+.++.||.-++.+.........+ -..+..+..+|+|++||+++ +.+|.|-.+..+.
T Consensus 28 ~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g--------~~~V~Vv~LP~~~~~ 99 (452)
T 3pbp_A 28 SSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN--------DNEIFVMEVPWGYSN 99 (452)
T ss_dssp EETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC--------SSEEEEEECCTTCSC
T ss_pred EEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec--------CCeEEEEEecCcccc
Confidence 355677777777777888887654332222222 23577899999999999998 6899998876321
Q ss_pred ----------EEEEEee-------cCCeEEEEecCCc----eEEE-e-eccEEEEeecCCC-ceeEEEeeC-------CC
Q psy3710 92 ----------VVICLEF-------NAPVKGVRLRRDK----IVVV-L-EGLIKVYTFIQCP-QQLHVFETN-------PN 140 (424)
Q Consensus 92 ----------~~~~~~~-------~~~v~~~~~~~~~----~~~~-~-~~~i~v~~~~~~~-~~~~~~~~~-------~~ 140 (424)
..+.+.. ..+|..+.|+|-+ .+++ . |+.|++||+.... ++. .++.. ..
T Consensus 100 ~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~ 178 (452)
T 3pbp_A 100 VEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDAR 178 (452)
T ss_dssp CCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSS
T ss_pred CcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcc
Confidence 1233431 3679999999865 2333 2 8999999996422 222 33211 11
Q ss_pred CCeeEEEeecCCCCeEEEeec--cCCeEEEE
Q psy3710 141 PKGLCVLCPNSNNSLLAFPGR--KSGHVHLV 169 (424)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~--~dg~i~i~ 169 (424)
...+.+++|.+++-.|.+ .. +.|.|+-.
T Consensus 179 ~~ev~S~~Fg~~~lTLYv-l~~t~~GDIYAl 208 (452)
T 3pbp_A 179 VNDITDLEFSKDGLTLYC-LNTTEGGDIFAF 208 (452)
T ss_dssp CCCEEEEEECTTSSCEEE-EECTTSCEEEEE
T ss_pred cceEEEEEEcCCCcEEEE-EecCCCCCEEEE
Confidence 244678888887765554 44 77887654
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.21 Score=48.46 Aligned_cols=262 Identities=11% Similarity=0.114 Sum_probs=142.4
Q ss_pred CCceEEEEECCCCCeeEeecCCeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCC
Q psy3710 10 KNGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLK 89 (424)
Q Consensus 10 ~~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~ 89 (424)
...|.++.-..+| .|-+|+.+|+..||..+.+...........|..+.. .++ .+-+++ .+.+..+|..+
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt--------~~Gl~~~~~~~ 130 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNGILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGA--------LNGLYTYQLQS 130 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTEEEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEE--------TTEEEEEETTT
T ss_pred CceEEEEEEcCCC-cEEEEeCCCeEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEc--------CCcceeEeCCC
Confidence 3568898877776 566666788999997765432211111234554433 333 444444 24788899877
Q ss_pred CcEEEEEe------ecCCeEEEEecCCc-eEEEeeccEEEEeecCCCceeEEEeeCC----CCCeeEEEeecCCCCeEEE
Q psy3710 90 KQVVICLE------FNAPVKGVRLRRDK-IVVVLEGLIKVYTFIQCPQQLHVFETNP----NPKGLCVLCPNSNNSLLAF 158 (424)
Q Consensus 90 ~~~~~~~~------~~~~v~~~~~~~~~-~~~~~~~~i~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~ 158 (424)
++... +. ....|.++...+++ .++++.+.+..++.. ..+ ...+.... ....+.++...+++..|-+
T Consensus 131 ~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~-~~~-~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWi 207 (758)
T 3ott_A 131 RKLTS-FDTRRNGLPNNTIYSIIRTKDNQIYVGTYNGLCRYIPS-NGK-FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWI 207 (758)
T ss_dssp CCEEE-ECHHHHCCSCSCEEEEEECTTCCEEEEETTEEEEEETT-TTE-EEEECCCCCTTCSSCCEEEEEEETTTTEEEE
T ss_pred CeEEE-eccCCCCcCCCeEEEEEEcCCCCEEEEeCCCHhhCccC-CCc-eEEecCCCccccccceeEEEEEECCCCEEEE
Confidence 66433 31 13468888887666 555566567778764 322 22222111 1123667777766665444
Q ss_pred eeccCCeEEEEeCCCCCCCCcccc-cccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCcceeeEEe----------cc
Q psy3710 159 PGRKSGHVHLVDLADPERPPLDIA-AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR----------RG 227 (424)
Q Consensus 159 ~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~----------~~ 227 (424)
|.. +-+..+|..+. . ...+. .....|.++...++|.+.+ |+. +. +.+++..+++...-.. ..
T Consensus 208 -gt~-~Gl~~~~~~~~-~-~~~~~~l~~~~i~~i~~d~~g~lWi-gT~-~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 280 (758)
T 3ott_A 208 -GTE-GYLFQYFPSTG-Q-IKQTEAFHNNSIKSLALDGNGDLLA-GTD-NG-LYVYHNDTTPLQHIIHDSRNIQSLTNNI 280 (758)
T ss_dssp -EEE-EEEEEEETTTT-E-EEEEEEEEEEEEEEEEECTTCCEEE-EET-TE-EEEECCTTSCCEEECCCTTCTTSCSCSC
T ss_pred -EEC-CCCeEEcCCCC-e-EEeccCCCCCeEEEEEEcCCCCEEE-EeC-Cc-eeEEecCCCcEEEEEcCCCCcCcCCcCe
Confidence 554 46788887653 2 22111 1234588888877776554 444 45 8999987654322111 01
Q ss_pred eeeeeecCCCCeEEEEeecCCeEEEEeCCCCCCCCeeec-------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEECC
Q psy3710 228 LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIA-------AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTG 300 (424)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~ 300 (424)
+..+....++... + |+..| +.++.... . ...+. .....|.++.-.++|.+.+. +.+| +..++..
T Consensus 281 i~~i~~D~~g~lW-i-GT~~G-l~~~~~~~-~--~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G--l~~~~~~ 351 (758)
T 3ott_A 281 IWNIFADQEHNIW-L-GTDYG-ISLSRYNS-A--LQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG--LIRFTDP 351 (758)
T ss_dssp EEEEEECTTCCEE-E-EESSS-EEEECCCC----CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE--EEEESCT
T ss_pred EEEEEEcCCCCEE-E-EeCCc-ccccccCC-c--eeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc--ceeeccc
Confidence 3444444444433 3 66666 55443321 1 11110 12346888888888765544 4444 6777655
Q ss_pred C
Q psy3710 301 S 301 (424)
Q Consensus 301 ~ 301 (424)
+
T Consensus 352 ~ 352 (758)
T 3ott_A 352 A 352 (758)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0053 Score=52.54 Aligned_cols=112 Identities=12% Similarity=0.127 Sum_probs=72.6
Q ss_pred CEEEEEecCCcEEEEEECCCcceeeEEecc--eeeeeec----CCCCeEEEEe-ecCCeEEEEeCCCCCCCCee-ec--c
Q psy3710 198 TRLATASYKGTLIRVFDTGSGQKLNELRRG--LCVLCPN----SNNSLLAFPG-RKSGHVHLVDLADPERPPLD-IA--A 267 (424)
Q Consensus 198 ~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~-~~dg~i~i~d~~~~~~~~~~-~~--~ 267 (424)
..++.++.||. |.-+|..+|+..-+++.. ...+... +.+..+++.. +.||.|+.++..++...... .. .
T Consensus 11 ~~V~v~t~dG~-l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGG-LHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSC-EEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCe-EEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 47888999999 999999999999888765 1122111 1123444433 68999999998876422110 00 1
Q ss_pred CCCCeEE---EEE-c----CCCCEEEEEeCCCcEEEEEECCCCceeeeeccC
Q psy3710 268 HEAPLSC---IAL-N----QTGTRLATASYKGTLIRVFDTGSGQKLNELRRD 311 (424)
Q Consensus 268 ~~~~v~~---~~~-~----~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~ 311 (424)
...++.. ... . ..+..+++++.++. +...|+++|+.++++...
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~-l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTI-MYTINMLNGEIISAFGPG 140 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEE-EEEEETTTCCEEEEESTT
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCE-EEEEECCCCcEEEEEecC
Confidence 1222221 001 0 14568899999999 999999999999998744
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.097 Score=44.20 Aligned_cols=229 Identities=11% Similarity=0.086 Sum_probs=104.2
Q ss_pred CCCeeEeecCC-----eEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEE
Q psy3710 21 DQGCFACGMED-----GFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVIC 95 (424)
Q Consensus 21 ~g~~la~g~~~-----~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~ 95 (424)
++.+++.|+.+ .+..||..+.+-......+........... ++.+.+.+|.... ..-..+.+||..+.+-...
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~-~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM-AGLVFAVGGFNGS-LRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEESCBCSS-SBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE-CCEEEEEeCcCCC-ccccceEEECCCCCceeeC
Confidence 34455555432 288899877654322222222222222222 4556566553211 1235788999887764432
Q ss_pred Eee--cCCeEEEEecCCceEEEe--e-----ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccC---
Q psy3710 96 LEF--NAPVKGVRLRRDKIVVVL--E-----GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKS--- 163 (424)
Q Consensus 96 ~~~--~~~v~~~~~~~~~~~~~~--~-----~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d--- 163 (424)
-.. ...-.+++...+..+++. + ..+.+||+. +.+ ...+.....+....+.+. -+++.+++ |+.+
T Consensus 93 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~-~~~-W~~~~~~p~~r~~~~~~~-~~~~iyv~-GG~~~~~ 168 (302)
T 2xn4_A 93 ANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIK-SNE-WFHVAPMNTRRSSVGVGV-VGGLLYAV-GGYDVAS 168 (302)
T ss_dssp CCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETT-TTE-EEEECCCSSCCBSCEEEE-ETTEEEEE-CCEETTT
T ss_pred CCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCC-CCe-EeecCCCCCcccCceEEE-ECCEEEEE-eCCCCCC
Confidence 221 111223333344444443 1 357778875 332 222222222221112221 24566665 6543
Q ss_pred ----CeEEEEeCCCCCC-CCcccccccCCeEEEEEccCCCEEEEEecC-----CcEEEEEECCCcceeeE--Eecce-ee
Q psy3710 164 ----GHVHLVDLADPER-PPLDIAAHEAPLSCIALNQTGTRLATASYK-----GTLIRVFDTGSGQKLNE--LRRGL-CV 230 (424)
Q Consensus 164 ----g~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~~i~iwd~~~~~~~~~--~~~~~-~~ 230 (424)
..+.+||+.+..- .+..+...... .+++.. +++.++.|+.+ .. +.+||+.+.+-... ++... ..
T Consensus 169 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~-~~~yd~~~~~W~~~~~~~~~r~~~ 245 (302)
T 2xn4_A 169 RQCLSTVECYNATTNEWTYIAEMSTRRSG-AGVGVL-NNLLYAVGGHDGPLVRKS-VEVYDPTTNAWRQVADMNMCRRNA 245 (302)
T ss_dssp TEECCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TTEEEEECCBSSSSBCCC-EEEEETTTTEEEEECCCSSCCBSC
T ss_pred CccccEEEEEeCCCCcEEECCCCcccccc-ccEEEE-CCEEEEECCCCCCcccce-EEEEeCCCCCEeeCCCCCCccccC
Confidence 4588899876410 00011111111 122222 56777777654 35 88999987643321 11111 11
Q ss_pred eeecCCCCeEEEEeecC-----CeEEEEeCCCCC
Q psy3710 231 LCPNSNNSLLAFPGRKS-----GHVHLVDLADPE 259 (424)
Q Consensus 231 ~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~ 259 (424)
.+...++ .+++.|+.+ ..+.+||+.+.+
T Consensus 246 ~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 246 GVCAVNG-LLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EEEEETT-EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred eEEEECC-EEEEECCcCCCcccccEEEEcCCCCe
Confidence 1111233 444446544 358888887643
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.11 Score=43.94 Aligned_cols=230 Identities=13% Similarity=0.090 Sum_probs=104.2
Q ss_pred CCCCCeeEeecC-----CeEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCc---CCCcCCCeEEEEECCCC
Q psy3710 19 NQDQGCFACGME-----DGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGT---HPKYPNNRVMIWDDLKK 90 (424)
Q Consensus 19 s~~g~~la~g~~-----~~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~---~~~~~d~~i~iwd~~~~ 90 (424)
.-++.+++.|+. +.+.+||..+.+-......+........... ++.+.+.+|.. ........+.++|..+.
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 335666666662 2288999877655332222222222222222 45555555431 00011356889998877
Q ss_pred cEEEEEee--cCCeEEEEecCCceEEEe-------eccEEEEeecCCCceeEEEeeCCCCC-eeEEEeecCCCCeEEEee
Q psy3710 91 QVVICLEF--NAPVKGVRLRRDKIVVVL-------EGLIKVYTFIQCPQQLHVFETNPNPK-GLCVLCPNSNNSLLAFPG 160 (424)
Q Consensus 91 ~~~~~~~~--~~~v~~~~~~~~~~~~~~-------~~~i~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~ 160 (424)
+-...-.. ...-.++....+..+++. ...+.+||.. +.+ ...+.....+. ...+... +++.+++ |
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~-~~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~-G 175 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPE-RDE-WHLVAPMLTRRIGVGVAVL--NRLLYAV-G 175 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETT-TTE-EEECCCCSSCCBSCEEEEE--TTEEEEE-C
T ss_pred eEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCC-CCe-EeECCCCCccccceEEEEE--CCEEEEE-e
Confidence 54432221 111122333333344442 1467888875 332 22221111111 1122222 5566666 7
Q ss_pred ccC-----CeEEEEeCCCCCC-CCcccccccCCeEEEEEccCCCEEEEEecC-----CcEEEEEECCCcceee--EEecc
Q psy3710 161 RKS-----GHVHLVDLADPER-PPLDIAAHEAPLSCIALNQTGTRLATASYK-----GTLIRVFDTGSGQKLN--ELRRG 227 (424)
Q Consensus 161 ~~d-----g~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~~i~iwd~~~~~~~~--~~~~~ 227 (424)
+.+ ..+.+||+.+..- .+..+......-..+.+ +++.++.|+.+ .. +.+||+.+.+-.. .++.+
T Consensus 176 G~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-v~~yd~~~~~W~~~~~~p~~ 252 (308)
T 1zgk_A 176 GFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNS-VERYDVETETWTFVAPMKHR 252 (308)
T ss_dssp CBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTEEEECCCCSSC
T ss_pred CCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccce-EEEEeCCCCcEEECCCCCCC
Confidence 654 4588899876410 00011111111122222 56677777654 45 8999998764322 12211
Q ss_pred ee-eeeecCCCCeEEEEeecC-----CeEEEEeCCCC
Q psy3710 228 LC-VLCPNSNNSLLAFPGRKS-----GHVHLVDLADP 258 (424)
Q Consensus 228 ~~-~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~ 258 (424)
.. ..+...+ ..+++.|+.+ ..+.+||+.+.
T Consensus 253 r~~~~~~~~~-~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 253 RSALGITVHQ-GRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CBSCEEEEET-TEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred ccceEEEEEC-CEEEEEcCcCCCcccceEEEEcCCCC
Confidence 11 1111123 3444445533 45777777654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.15 Score=44.03 Aligned_cols=142 Identities=13% Similarity=0.158 Sum_probs=81.0
Q ss_pred eEEEEEccCCCEEEEE------------ecCCcEEEEEECCCc--cee-eEEec--------ceeeeeecC--CCC-eEE
Q psy3710 188 LSCIALNQTGTRLATA------------SYKGTLIRVFDTGSG--QKL-NELRR--------GLCVLCPNS--NNS-LLA 241 (424)
Q Consensus 188 v~~~~~~~~~~~l~~~------------~~d~~~i~iwd~~~~--~~~-~~~~~--------~~~~~~~~~--~~~-~~~ 241 (424)
...++..|+|..++++ ..+|. |.++|..+. +.. ..+.+ ....+.+.+ ++. .++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~-I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGK-ILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCE-EEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCe-EEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 3466677776555554 26888 999998742 211 12222 122333333 344 455
Q ss_pred EEeec--CCeEEEEeCCCCCCCCe---eecc-CCCCeEEEEEcCCCCEEEEEeC-----------------CCcEEEEEE
Q psy3710 242 FPGRK--SGHVHLVDLADPERPPL---DIAA-HEAPLSCIALNQTGTRLATASY-----------------KGTLIRVFD 298 (424)
Q Consensus 242 ~~~~~--dg~i~i~d~~~~~~~~~---~~~~-~~~~v~~~~~~~~~~~l~~~~~-----------------d~~~i~iwd 298 (424)
++... +.+|.+|++........ .+.+ .-...+.+++.++|.+.++... .|. |.-+|
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~-vyr~d 209 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSF-VTYYS 209 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEE-EEEEC
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccE-EEEEE
Confidence 54333 56788888766432222 2222 2345789999999988777541 244 55555
Q ss_pred CCCCceee---------eeccCCcEEEEEe-CCCcEEEEEccc
Q psy3710 299 TGSGQKLN---------ELRRDSSYLCVSS-DHGTVHVFSVDE 331 (424)
Q Consensus 299 ~~~~~~~~---------~~~~~~~~l~~~~-~d~~i~iw~~~~ 331 (424)
..+-+.+. .++||++.|..+. ..+.|..|++..
T Consensus 210 ~~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 210 PNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp TTCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CCeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 53222221 3679998776654 578899999864
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.15 Score=43.04 Aligned_cols=224 Identities=11% Similarity=0.050 Sum_probs=105.5
Q ss_pred CCeeEeecCC---eEEEEeCCcCcccccccccCCCeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEee
Q psy3710 22 QGCFACGMED---GFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEF 98 (424)
Q Consensus 22 g~~la~g~~~---~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 98 (424)
+.+++.|+.+ .+.+||..+.+-......+........... ++.+.+.+|.. ...-..+.+||..+++-...-..
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~--~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW-DNVVYILGGSQ--LFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE-TTEEEEECCBS--SSBCCEEEEEETTTTEEEEEECC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE-CCEEEEEeCCC--CCCcceEEEEeCCCCeEEECCCC
Confidence 3445566543 399999887665332222222222222233 44455555532 11246889999988765433222
Q ss_pred c--CCeEEEEecCCceEEEe--e------ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeecc------
Q psy3710 99 N--APVKGVRLRRDKIVVVL--E------GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRK------ 162 (424)
Q Consensus 99 ~--~~v~~~~~~~~~~~~~~--~------~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------ 162 (424)
+ ..-.++....+..+++. + ..+.+||.. +.+ ...+.....+....+... -+++.+++ |+.
T Consensus 89 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~-~~~-W~~~~~~p~~r~~~~~~~-~~~~iyv~-GG~~~~~~~ 164 (306)
T 3ii7_A 89 PTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTR-TES-WHTKPSMLTQRCSHGMVE-ANGLIYVC-GGSLGNNVS 164 (306)
T ss_dssp SSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETT-TTE-EEEECCCSSCCBSCEEEE-ETTEEEEE-CCEESCTTT
T ss_pred CccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCC-CCc-eEeCCCCcCCcceeEEEE-ECCEEEEE-CCCCCCCCc
Confidence 1 11123333344444443 2 357888875 332 222222111111111121 25566665 654
Q ss_pred ---CCeEEEEeCCCCCCCCcccccc--cCCeEEEEEccCCCEEEEEecC-----CcEEEEEECCCcceee--EEecc---
Q psy3710 163 ---SGHVHLVDLADPERPPLDIAAH--EAPLSCIALNQTGTRLATASYK-----GTLIRVFDTGSGQKLN--ELRRG--- 227 (424)
Q Consensus 163 ---dg~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d-----~~~i~iwd~~~~~~~~--~~~~~--- 227 (424)
...+.+||+.+.. -..+... ...-.++... +++.++.|+.+ .. +.+||+.+.+-.. .++.+
T Consensus 165 ~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~-~~~yd~~~~~W~~~~~~p~~r~~ 240 (306)
T 3ii7_A 165 GRVLNSCEVYDPATET--WTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDN-VEYYDIKLNEWKMVSPMPWKGVT 240 (306)
T ss_dssp CEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCC-EEEEETTTTEEEECCCCSCCBSC
T ss_pred ccccceEEEeCCCCCe--EEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCce-EEEeeCCCCcEEECCCCCCCccc
Confidence 3458889987641 1111110 0111122222 56677776643 35 8899998764222 12211
Q ss_pred eeeeeecCCCCeEEEEeecC-----CeEEEEeCCCCC
Q psy3710 228 LCVLCPNSNNSLLAFPGRKS-----GHVHLVDLADPE 259 (424)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~ 259 (424)
.....+ +..+++.|+.+ ..+.+||+.+.+
T Consensus 241 ~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 241 VKCAAV---GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp CEEEEE---TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred eeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 111222 34455556643 568888887643
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.18 Score=43.68 Aligned_cols=103 Identities=14% Similarity=0.079 Sum_probs=57.2
Q ss_pred CceEEEEECCCCCeeEeecCCeEEEEeCCcCccc--ccc---cccCCCeeeEEEecc---CceEEEEeCCcCCCcCCCeE
Q psy3710 11 NGLLYAGFNQDQGCFACGMEDGFRIYNCDPLKEK--ERQ---DFTDGGLGHVEMLFR---CNYLALVGGGTHPKYPNNRV 82 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~~~--~~~---~~~~~~i~~~~~~~~---~~~l~~~~~~~~~~~~d~~i 82 (424)
..-..++|.|+|+++++-..+.|++++ .++.. ... .........+++.|+ +..+.++...... ...+.|
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~-~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEG-GLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTT-SSEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCC-CCccEE
Confidence 345789999999977766554488888 23221 101 111345677889887 5555444321000 001578
Q ss_pred EEEECCCCcE-----EE-EEee----cCCeEEEEecCCceEEEe
Q psy3710 83 MIWDDLKKQV-----VI-CLEF----NAPVKGVRLRRDKIVVVL 116 (424)
Q Consensus 83 ~iwd~~~~~~-----~~-~~~~----~~~v~~~~~~~~~~~~~~ 116 (424)
..++...+.. +. .+.. ......++|.||+.+.++
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVT 151 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEE
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEE
Confidence 8888764421 11 1211 123468999999966665
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.13 Score=43.50 Aligned_cols=132 Identities=14% Similarity=0.188 Sum_probs=68.1
Q ss_pred CCCEEEEEecCC-----cEEEEEECCCcceeeE--Eecceee-eeecCCCCeEEEEeec-------CCeEEEEeCCCCCC
Q psy3710 196 TGTRLATASYKG-----TLIRVFDTGSGQKLNE--LRRGLCV-LCPNSNNSLLAFPGRK-------SGHVHLVDLADPER 260 (424)
Q Consensus 196 ~~~~l~~~~~d~-----~~i~iwd~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~-------dg~i~i~d~~~~~~ 260 (424)
+++.++.|+.++ . +.+||+.+.+-... ++.+... .+...++ .+++.|+. ...+.+||+.+..-
T Consensus 108 ~~~iyv~GG~~~~~~~~~-~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSS-VEAYNIKSNEWFHVAPMNTRRSSVGVGVVGG-LLYAVGGYDVASRQCLSTVECYNATTNEW 185 (302)
T ss_dssp TTEEEEEEEECSSCEEEE-EEEEETTTTEEEEECCCSSCCBSCEEEEETT-EEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCccCce-EEEEeCCCCeEeecCCCCCcccCceEEEECC-EEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence 566777777553 4 77889877643322 1211111 1111234 44444543 34688999887541
Q ss_pred CC-eeeccCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEECCCCceeee--e----------ccCCcEEEEEeCCC
Q psy3710 261 PP-LDIAAHEAPLSCIALNQTGTRLATASYKG-----TLIRVFDTGSGQKLNE--L----------RRDSSYLCVSSDHG 322 (424)
Q Consensus 261 ~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~~i~iwd~~~~~~~~~--~----------~~~~~~l~~~~~d~ 322 (424)
.. ..+.........+.+ ++++++.|+.++ . +.+||+.+.+-... + ..++++++.|+.++
T Consensus 186 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 186 TYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKS-VEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDG 262 (302)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCC-EEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred EECCCCccccccccEEEE--CCEEEEECCCCCCcccce-EEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCC
Confidence 10 011111111122222 567777777643 5 88999987643221 1 12556666666543
Q ss_pred -----cEEEEEcccc
Q psy3710 323 -----TVHVFSVDEA 332 (424)
Q Consensus 323 -----~i~iw~~~~~ 332 (424)
.+.+||+.+.
T Consensus 263 ~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 263 SCNLASVEYYNPTTD 277 (302)
T ss_dssp SSBCCCEEEEETTTT
T ss_pred CcccccEEEEcCCCC
Confidence 4777777663
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.12 Score=43.90 Aligned_cols=177 Identities=13% Similarity=0.063 Sum_probs=82.4
Q ss_pred eccEEEEeecCCCceeEEEeeC-CCCCeeEEEeecCCCCeEEEeecc-----------CCeEEEEeCCCCCC-CCccccc
Q psy3710 117 EGLIKVYTFIQCPQQLHVFETN-PNPKGLCVLCPNSNNSLLAFPGRK-----------SGHVHLVDLADPER-PPLDIAA 183 (424)
Q Consensus 117 ~~~i~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~-----------dg~i~i~d~~~~~~-~~~~~~~ 183 (424)
...+.+||.. +.+-. ..... ..+..-.+++ ..++..+++ |+. ...+..||..+..- .+..+..
T Consensus 12 G~~~~~yd~~-~~~W~-~~~~~~p~~r~~~~~~-~~~~~iyv~-GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~ 87 (315)
T 4asc_A 12 EEGAVAYDPA-ANECY-CASLSSQVPKNHVSLV-TKENQVFVA-GGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPS 87 (315)
T ss_dssp TTEEEEEETT-TTEEE-EEECCCCSCSSEEEEE-CTTCCEEEE-EEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSS
T ss_pred CCceEEECCC-CCeEe-cCCCCCCCCccceEEE-EECCEEEEE-cCcccCCCCCccccccceEEecCCCCeEEECCCCCc
Confidence 5678888875 33322 22211 1122222222 346666666 663 12377888876410 0001111
Q ss_pred ccCCeEEEEEccCCCEEEEEecC--------CcEEEEEECCCccee--eEEeccee-eeeecCCCCeEEEEeec------
Q psy3710 184 HEAPLSCIALNQTGTRLATASYK--------GTLIRVFDTGSGQKL--NELRRGLC-VLCPNSNNSLLAFPGRK------ 246 (424)
Q Consensus 184 ~~~~v~~~~~~~~~~~l~~~~~d--------~~~i~iwd~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~------ 246 (424)
.... .+++.. +++.++.|+.+ .. +.+||..+.+-. ..++.+.. ..+...++ .+++.|+.
T Consensus 88 ~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~-~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~ 163 (315)
T 4asc_A 88 PRCL-FGLGEA-LNSIYVVGGREIKDGERCLDS-VMCYDRLSFKWGESDPLPYVVYGHTVLSHMD-LVYVIGGKGSDRKC 163 (315)
T ss_dssp CEES-CEEEEE-TTEEEEECCEESSTTCCBCCC-EEEEETTTTEEEECCCCSSCCBSCEEEEETT-EEEEECCBCTTSCB
T ss_pred chhc-eeEEEE-CCEEEEEeCCcCCCCCcccce-EEEECCCCCcEeECCCCCCcccceeEEEECC-EEEEEeCCCCCCcc
Confidence 0111 122222 55666777642 45 889998876422 22222211 11122334 44444654
Q ss_pred CCeEEEEeCCCCCCC-CeeeccCCCCeEEEEEcCCCCEEEEEeCCCc----EEEEEECCCCc
Q psy3710 247 SGHVHLVDLADPERP-PLDIAAHEAPLSCIALNQTGTRLATASYKGT----LIRVFDTGSGQ 303 (424)
Q Consensus 247 dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~----~i~iwd~~~~~ 303 (424)
-..+.+||..+.+-. ...+......-..+.+ +++.++.|+.++. .+.+||+.+.+
T Consensus 164 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 164 LNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred cceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 247899998875410 1111111111122222 6677777776542 18889998764
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.038 Score=47.30 Aligned_cols=174 Identities=14% Similarity=0.082 Sum_probs=94.8
Q ss_pred eEEEeeccCCeEEEEeCCCCCCCCcccccc-cCCeEEEEE--cc-CCCEEEEE-ecCCcEEEEEECCCcceeeEEecc--
Q psy3710 155 LLAFPGRKSGHVHLVDLADPERPPLDIAAH-EAPLSCIAL--NQ-TGTRLATA-SYKGTLIRVFDTGSGQKLNELRRG-- 227 (424)
Q Consensus 155 ~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~--~~-~~~~l~~~-~~d~~~i~iwd~~~~~~~~~~~~~-- 227 (424)
.+++ ++.||.|.-+|..++ +..-.+... ..++....- .+ ++..++.. +.||. |..++..+|.....+..+
T Consensus 12 ~V~v-~t~dG~l~Ald~~tG-~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~-l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 12 ILIA-ADVEGGLHAVDRRNG-HIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGN-IYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEE-EETTSCEEEEETTTT-EEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTE-EEEEETTTEEEEEEEEHHHH
T ss_pred EEEE-EeCCCeEEEEECCCC-cEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCE-EEEEECCCCcEEeeeccccc
Confidence 4555 888888888888776 433333322 122222110 01 22333333 58999 999999888655544432
Q ss_pred e--eeeeec-------C---CCCeEEEEeecCCeEEEEeCCCCCCCCeeeccCC-CC-----eEEEEEc-----CCCCEE
Q psy3710 228 L--CVLCPN-------S---NNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHE-AP-----LSCIALN-----QTGTRL 284 (424)
Q Consensus 228 ~--~~~~~~-------~---~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~-----v~~~~~~-----~~~~~l 284 (424)
+ ..+... + .....+++|+.+|.+...|+++++.....-.+.. .. ..|.... ..+..+
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 1 001110 0 1344566799999999999999874322111110 10 1111110 123567
Q ss_pred EEEeCCCcEEEEEECCCCceeeeec--------------------cCCcEEEEEeCCCcEEEEEccccccc
Q psy3710 285 ATASYKGTLIRVFDTGSGQKLNELR--------------------RDSSYLCVSSDHGTVHVFSVDEAQKI 335 (424)
Q Consensus 285 ~~~~~d~~~i~iwd~~~~~~~~~~~--------------------~~~~~l~~~~~d~~i~iw~~~~~~~~ 335 (424)
+.+..+.. +.+.+ ++|+ ++.++ .++.+ +.++.||.|.-+|..+|+.+
T Consensus 169 ~ig~~~y~-v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~ 235 (339)
T 2be1_A 169 VIGKTIFE-LGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIAR 235 (339)
T ss_dssp EEEEEEEE-CEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEE
T ss_pred EEecceEE-EEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEE
Confidence 77777776 77766 4554 33221 23555 55788999999999887754
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.23 Score=43.03 Aligned_cols=227 Identities=13% Similarity=0.050 Sum_probs=115.9
Q ss_pred cCCeEEEEecCCceEEEe--eccEEEEeecCCCc-eeEEEee-CCCCCeeEEEeecCC---CCeEEEeecc---C----C
Q psy3710 99 NAPVKGVRLRRDKIVVVL--EGLIKVYTFIQCPQ-QLHVFET-NPNPKGLCVLCPNSN---NSLLAFPGRK---S----G 164 (424)
Q Consensus 99 ~~~v~~~~~~~~~~~~~~--~~~i~v~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~---~~~l~~~~~~---d----g 164 (424)
-.....++|.|++.++++ ++.|.+++. .++ .+..+.. .........++++|+ +..|.++-.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~--~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLISP--SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEECS--SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEeC--CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 346789999999987777 578888863 343 2221111 112244678899997 5555552221 3 5
Q ss_pred eEEEEeCCCCCCC------C-cccc-cccCCeEEEEEccCCCEEEEEec-------------CCcEEEEEECCCc-----
Q psy3710 165 HVHLVDLADPERP------P-LDIA-AHEAPLSCIALNQTGTRLATASY-------------KGTLIRVFDTGSG----- 218 (424)
Q Consensus 165 ~i~i~d~~~~~~~------~-~~~~-~~~~~v~~~~~~~~~~~l~~~~~-------------d~~~i~iwd~~~~----- 218 (424)
.|..|+....... + ..+. ........++|.|+|.+.++.+. .+. |.-++....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~-I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGK-ILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSE-EEEECTTSCCCTTS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeE-EEEEcCCCCCCCCC
Confidence 6777776643101 1 1111 11123467999999987666432 144 555554321
Q ss_pred ----ceeeEEe-cceeeeeecCCCCeEEEEeec-C--CeEEEEeCCC--------C-------CCCCeeeccCCCCeEEE
Q psy3710 219 ----QKLNELR-RGLCVLCPNSNNSLLAFPGRK-S--GHVHLVDLAD--------P-------ERPPLDIAAHEAPLSCI 275 (424)
Q Consensus 219 ----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-d--g~i~i~d~~~--------~-------~~~~~~~~~~~~~v~~~ 275 (424)
..+.... .....++++++...++++-.. + ..|.+..... + ..+...+.........+
T Consensus 185 pf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~ 264 (354)
T 3a9g_A 185 PFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA 264 (354)
T ss_dssp SSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred CCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence 0111111 124568888854445543222 2 1344433211 0 01222221123457888
Q ss_pred EEc-------CCCCEEEEEeCCCcEEEEEECCCC-cee--eeecc--CCcEE-EEEeCCCcEEEEEc
Q psy3710 276 ALN-------QTGTRLATASYKGTLIRVFDTGSG-QKL--NELRR--DSSYL-CVSSDHGTVHVFSV 329 (424)
Q Consensus 276 ~~~-------~~~~~l~~~~~d~~~i~iwd~~~~-~~~--~~~~~--~~~~l-~~~~~d~~i~iw~~ 329 (424)
+|. .+|.++++.-..+. |...++... +.. ..+-. .++.. +..+.||.|++-+-
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~~~~-v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLRGSM-LAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETTTTE-EEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred EEECCCCCcccCCcEEEEEcCCCE-EEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 883 46766666555666 888888753 221 22321 12211 22345777777664
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.22 Score=42.12 Aligned_cols=184 Identities=9% Similarity=0.040 Sum_probs=84.3
Q ss_pred CceEEEEeCCcCCCcCCCeEEEEECCCCcEEEEEeec--CCeEEEEecCCceEEEe-e----------ccEEEEeecCCC
Q psy3710 63 CNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFN--APVKGVRLRRDKIVVVL-E----------GLIKVYTFIQCP 129 (424)
Q Consensus 63 ~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~-~----------~~i~v~~~~~~~ 129 (424)
++.+++.+|... ..-..+.++|..+++-...-..+ ..-.+++...+..++.. . ..+.+||.. +.
T Consensus 24 ~~~i~v~GG~~~--~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~-~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFR--QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPM-TN 100 (308)
T ss_dssp CCCEEEECCBSS--SBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETT-TT
T ss_pred CCEEEEEeCcCC--CCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCC-CC
Confidence 344555554210 12357889998877644321111 11123333333344432 1 357778874 32
Q ss_pred ceeEEEeeCCCCC-eeEEEeecCCCCeEEEeeccC-----CeEEEEeCCCCCC-CCcccccccCCeEEEEEccCCCEEEE
Q psy3710 130 QQLHVFETNPNPK-GLCVLCPNSNNSLLAFPGRKS-----GHVHLVDLADPER-PPLDIAAHEAPLSCIALNQTGTRLAT 202 (424)
Q Consensus 130 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~d-----g~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~ 202 (424)
+ ...+.....+. ....... +++.+++ |+.+ ..+.+||..+..- .+..+......-..+.+ +++.++.
T Consensus 101 ~-W~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~ 174 (308)
T 1zgk_A 101 Q-WSPCAPMSVPRNRIGVGVI--DGHIYAV-GGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAV 174 (308)
T ss_dssp E-EEECCCCSSCCBTCEEEEE--TTEEEEE-CCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEE
T ss_pred e-EeECCCCCcCccccEEEEE--CCEEEEE-cCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEE
Confidence 2 22222111111 1112222 5666666 6643 4678888876410 00011111111122222 5667777
Q ss_pred EecC-----CcEEEEEECCCcceee--EEecc---eeeeeecCCCCeEEEEeecC-----CeEEEEeCCCCC
Q psy3710 203 ASYK-----GTLIRVFDTGSGQKLN--ELRRG---LCVLCPNSNNSLLAFPGRKS-----GHVHLVDLADPE 259 (424)
Q Consensus 203 ~~~d-----~~~i~iwd~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~ 259 (424)
|+.+ .. +.+||+.+.+-.. .++.+ ...+.+ +..+++.|+.+ ..+.+||+.+.+
T Consensus 175 GG~~~~~~~~~-~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 175 GGFDGTNRLNS-AECYYPERNEWRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp CCBCSSCBCCC-EEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred eCCCCCCcCce-EEEEeCCCCeEeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 7654 45 8899987764322 11111 111122 34455546553 568899987653
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.29 Score=41.59 Aligned_cols=171 Identities=8% Similarity=0.069 Sum_probs=79.6
Q ss_pred CeEEEEECCCCcEEEEEeec----CCeEEEEecCCceEEEee-------------ccEEEEeecCCCceeEEEeeCCCCC
Q psy3710 80 NRVMIWDDLKKQVVICLEFN----APVKGVRLRRDKIVVVLE-------------GLIKVYTFIQCPQQLHVFETNPNPK 142 (424)
Q Consensus 80 ~~i~iwd~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~-------------~~i~v~~~~~~~~~~~~~~~~~~~~ 142 (424)
..+..||..+++-.. ...+ ..-.+++...+..+++.. ..+.+||.. +.+ ...+.....+.
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~-~~~-W~~~~~~p~~r 89 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHL-DSE-WLGMPPLPSPR 89 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETT-TTE-EEECCCBSSCE
T ss_pred CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCC-CCe-EEECCCCCcch
Confidence 579999998887543 2221 222334444444444331 126677764 322 22222211111
Q ss_pred eeEEEeecCCCCeEEEeeccC--------CeEEEEeCCCCCC-CCcccccccCCeEEEEEccCCCEEEEEec-C-----C
Q psy3710 143 GLCVLCPNSNNSLLAFPGRKS--------GHVHLVDLADPER-PPLDIAAHEAPLSCIALNQTGTRLATASY-K-----G 207 (424)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~d--------g~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~ 207 (424)
.-.+.+.. +++.+++ |+.+ ..+.+||..+..- .+..+...... .+++. -+++.++.|+. + .
T Consensus 90 ~~~~~~~~-~~~lyv~-GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~ 165 (315)
T 4asc_A 90 CLFGLGEA-LNSIYVV-GGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSDRKCLN 165 (315)
T ss_dssp ESCEEEEE-TTEEEEE-CCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTTSCBCC
T ss_pred hceeEEEE-CCEEEEE-eCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCCCcccc
Confidence 11112211 4555665 6643 4588889876410 00011111111 12222 35667777776 2 3
Q ss_pred cEEEEEECCCcceee--EEeccee-eeeecCCCCeEEEEeecCC-----eEEEEeCCCCC
Q psy3710 208 TLIRVFDTGSGQKLN--ELRRGLC-VLCPNSNNSLLAFPGRKSG-----HVHLVDLADPE 259 (424)
Q Consensus 208 ~~i~iwd~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~dg-----~i~i~d~~~~~ 259 (424)
. +.+||..+.+-.. .++.+.. ..+...++ .+++.|+.++ .+.+||+.+.+
T Consensus 166 ~-~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 166 K-MCVYDPKKFEWKELAPMQTARSLFGATVHDG-RIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp C-EEEEETTTTEEEECCCCSSCCBSCEEEEETT-EEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred e-EEEEeCCCCeEEECCCCCCchhceEEEEECC-EEEEEeccCCCCccceEEEEECCCCe
Confidence 5 8899988764322 2221111 11112234 4544465543 58889987753
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.33 Score=42.08 Aligned_cols=101 Identities=9% Similarity=-0.056 Sum_probs=57.0
Q ss_pred CceEEEEECCCCCeeEeecCCeEEEEeCCcCc-ccccc---cccCCCeeeEEEecc---CceEEEEeCC-cCCCcCC---
Q psy3710 11 NGLLYAGFNQDQGCFACGMEDGFRIYNCDPLK-EKERQ---DFTDGGLGHVEMLFR---CNYLALVGGG-THPKYPN--- 79 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la~g~~~~i~iw~~~~~~-~~~~~---~~~~~~i~~~~~~~~---~~~l~~~~~~-~~~~~~d--- 79 (424)
..-..++|.|+|+++++-..+.|++++. .++ .+... .........+++.|+ +..+.++... . .+
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~----~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFA----EGGHI 103 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEEC----GGGCE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccC----CCCCc
Confidence 3467899999998777666544888873 333 11110 111345678899887 4444443310 0 12
Q ss_pred -CeEEEEECCCC--c-----EE-EEEee--cCCeEEEEecCCceEEEe
Q psy3710 80 -NRVMIWDDLKK--Q-----VV-ICLEF--NAPVKGVRLRRDKIVVVL 116 (424)
Q Consensus 80 -~~i~iwd~~~~--~-----~~-~~~~~--~~~v~~~~~~~~~~~~~~ 116 (424)
..|..++...+ . .+ ..+.. ......++|.||+.+.++
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt 151 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT 151 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence 56777776543 1 11 11221 123567999999976665
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.36 Score=41.85 Aligned_cols=139 Identities=11% Similarity=0.036 Sum_probs=75.6
Q ss_pred eEEEeecCCCC-eEEEeeccCCeEEEEeCCCCC-CCCccc----ccccCCeEEEEEccC---CCEEEEEe-c-------C
Q psy3710 144 LCVLCPNSNNS-LLAFPGRKSGHVHLVDLADPE-RPPLDI----AAHEAPLSCIALNQT---GTRLATAS-Y-------K 206 (424)
Q Consensus 144 ~~~~~~~~~~~-~l~~~~~~dg~i~i~d~~~~~-~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~~-~-------d 206 (424)
...+++.|+++ +++ +...|.|++++..... ..+..+ .........|+++|+ +..|+.+. . .
T Consensus 20 P~~i~~~pdG~~l~V--~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 20 PWALAFLPDNHGMLI--TLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp EEEEEECSTTCCEEE--EETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred cEEEEEcCCCCEEEE--EeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 46788999998 555 4667999999854321 111111 122345689999995 44554443 2 2
Q ss_pred CcEEEEEECCCc--c--eee----EEec-----c-eeeeeecCCCCeEEEEeec------------CCeEEEEeCCCCCC
Q psy3710 207 GTLIRVFDTGSG--Q--KLN----ELRR-----G-LCVLCPNSNNSLLAFPGRK------------SGHVHLVDLADPER 260 (424)
Q Consensus 207 ~~~i~iwd~~~~--~--~~~----~~~~-----~-~~~~~~~~~~~~~~~~~~~------------dg~i~i~d~~~~~~ 260 (424)
.. |..++.... + ... .++. | ...+.+.|++..++..|.. .|.|.-++....-.
T Consensus 98 ~~-v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 98 TA-VGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EE-EEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eE-EEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 24 666665432 1 111 1111 1 3468899988555544332 35777777754210
Q ss_pred -----------CCeee-ccCCCCeEEEEEcC-CCCEEEE
Q psy3710 261 -----------PPLDI-AAHEAPLSCIALNQ-TGTRLAT 286 (424)
Q Consensus 261 -----------~~~~~-~~~~~~v~~~~~~~-~~~~l~~ 286 (424)
....+ .++ .....++|+| +|+++++
T Consensus 177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEE
T ss_pred CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEE
Confidence 11111 123 3467899999 5554443
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.46 Score=41.12 Aligned_cols=41 Identities=15% Similarity=0.189 Sum_probs=20.9
Q ss_pred EEEEECCCCceee--ee----------ccCCcEEEEEeCCC------cEEEEEcccccc
Q psy3710 294 IRVFDTGSGQKLN--EL----------RRDSSYLCVSSDHG------TVHVFSVDEAQK 334 (424)
Q Consensus 294 i~iwd~~~~~~~~--~~----------~~~~~~l~~~~~d~------~i~iw~~~~~~~ 334 (424)
+.+||+.+.+-.. .+ ..++++++.|+.++ .+.++++++++.
T Consensus 287 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 287 TDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp CEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred EEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence 7789988654222 11 12566777777542 355556666544
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.93 Score=38.91 Aligned_cols=101 Identities=11% Similarity=0.047 Sum_probs=58.2
Q ss_pred CceEEEEECCCCCeeEeecCCe-EEEEeCCcCccccc------ccccCCCeeeEEEecc---CceEE-EEeCCcCCCcCC
Q psy3710 11 NGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKER------QDFTDGGLGHVEMLFR---CNYLA-LVGGGTHPKYPN 79 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~------~~~~~~~i~~~~~~~~---~~~l~-~~~~~~~~~~~d 79 (424)
..-..|+|.|||+++++-...+ |++++.+.++.... .....+....+++.|+ +..+. +.+.. .+
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~-----~~ 106 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA-----SD 106 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS-----SS
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC-----CC
Confidence 4567899999999888777455 88888654443111 1112456778899885 33333 33322 24
Q ss_pred CeEEEEECCCC----------cEEE-EEe--ecCCeEEEEecCCceEEEe
Q psy3710 80 NRVMIWDDLKK----------QVVI-CLE--FNAPVKGVRLRRDKIVVVL 116 (424)
Q Consensus 80 ~~i~iwd~~~~----------~~~~-~~~--~~~~v~~~~~~~~~~~~~~ 116 (424)
+.|.-|....+ +.+. .+. .......+.|.||+.+.++
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt 156 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAG 156 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEE
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEE
Confidence 56666665431 1111 121 1234467999999865554
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.36 E-value=1.5 Score=39.45 Aligned_cols=106 Identities=13% Similarity=0.060 Sum_probs=58.0
Q ss_pred CceEEEEECCCCCeeEeecCCe-EEEEeCCcCcccccccc--------cCCCeeeEEEecc---CceEEEEeCCcCCCc-
Q psy3710 11 NGLLYAGFNQDQGCFACGMEDG-FRIYNCDPLKEKERQDF--------TDGGLGHVEMLFR---CNYLALVGGGTHPKY- 77 (424)
Q Consensus 11 ~~V~~~~~s~~g~~la~g~~~~-i~iw~~~~~~~~~~~~~--------~~~~i~~~~~~~~---~~~l~~~~~~~~~~~- 77 (424)
..-..|+|.|+|+++++-...+ |++++...++....... ..+....+++.|+ +..+.++.....+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 3567899999999888877665 88887554433111111 2355668999985 555444431100000
Q ss_pred -----CCCeEEEEECCCC--c-----EEEE-Ee--ecCCeEEEEecCCceEEEe
Q psy3710 78 -----PNNRVMIWDDLKK--Q-----VVIC-LE--FNAPVKGVRLRRDKIVVVL 116 (424)
Q Consensus 78 -----~d~~i~iwd~~~~--~-----~~~~-~~--~~~~v~~~~~~~~~~~~~~ 116 (424)
....|.-++...+ + .+.. +. .......++|.||+.+.++
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~ 160 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYT 160 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEE
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEE
Confidence 0135555554321 1 1111 11 1245788999999866554
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.15 E-value=1.4 Score=37.98 Aligned_cols=73 Identities=12% Similarity=0.046 Sum_probs=36.3
Q ss_pred CCCeeEeecCCe--EEEEeCCc--Cccccccccc-CCCeeeEEEeccCceEEEEeCCcC----CCcCCCeEEEEECCCCc
Q psy3710 21 DQGCFACGMEDG--FRIYNCDP--LKEKERQDFT-DGGLGHVEMLFRCNYLALVGGGTH----PKYPNNRVMIWDDLKKQ 91 (424)
Q Consensus 21 ~g~~la~g~~~~--i~iw~~~~--~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~~----~~~~d~~i~iwd~~~~~ 91 (424)
++++++.|+.++ +.+||..+ .+-......+ ...........+ +.+.+.+|... ....-..+.+||..+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFID-GNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEET-TEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEEC-CEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 666777765444 99999864 3222222222 222222222333 45555554310 00113578899988776
Q ss_pred EEE
Q psy3710 92 VVI 94 (424)
Q Consensus 92 ~~~ 94 (424)
-..
T Consensus 98 W~~ 100 (357)
T 2uvk_A 98 WVK 100 (357)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.93 Score=35.82 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=61.7
Q ss_pred eeEEEeecCCCCeEEEeeccCCeEEEEeCCCCCCCCcccccccCCe--------EEEEEccCCCEEEEEecCCcEEEEEE
Q psy3710 143 GLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPL--------SCIALNQTGTRLATASYKGTLIRVFD 214 (424)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~l~~~~~d~~~i~iwd 214 (424)
.+..++++|++.+.++ .+|.+.-.+..+. .. ..+.+....| .++.|.|+|.+.++ .||. |+-++
T Consensus 42 ~~~~laf~P~G~LYaV---~~G~Ly~~~~~t~-~~-~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~-iyr~~ 113 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV---LNDKIYKGTPPTH-DN-DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDK-LYKAS 113 (236)
T ss_dssp TCSEEEECTTSCEEEE---ETTEEEEESCCCS-TT-CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTE-EEEES
T ss_pred cceeEEECCCccEEEE---eCCeEEEECCCCC-Cc-ccccccccEecccccccceEEEECCCCCEEEe--CCCE-EEEeC
Confidence 3558899998885553 7777777666543 22 2222223333 78999999977776 5688 88777
Q ss_pred CCCccee------eEEe----cceeeeeecCCCCeEEEEeecCCeEEE
Q psy3710 215 TGSGQKL------NELR----RGLCVLCPNSNNSLLAFPGRKSGHVHL 252 (424)
Q Consensus 215 ~~~~~~~------~~~~----~~~~~~~~~~~~~~~~~~~~~dg~i~i 252 (424)
-.+.... ..+- ..+..+.+.|++...++. ++.++-
T Consensus 114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~---dg~lyr 158 (236)
T 1tl2_A 114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH---GQQFYK 158 (236)
T ss_dssp CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE---TTEEEE
T ss_pred CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe---CCcEEe
Confidence 6432111 1111 246788889999888763 777544
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.11 E-value=1.5 Score=37.94 Aligned_cols=106 Identities=8% Similarity=-0.060 Sum_probs=54.7
Q ss_pred CceEEEEECCCCC-eeEeecCCeEEEEeCCcCcc--cccc----cccCCCeeeEEEecc---CceEEEEeCCcCCC-cCC
Q psy3710 11 NGLLYAGFNQDQG-CFACGMEDGFRIYNCDPLKE--KERQ----DFTDGGLGHVEMLFR---CNYLALVGGGTHPK-YPN 79 (424)
Q Consensus 11 ~~V~~~~~s~~g~-~la~g~~~~i~iw~~~~~~~--~~~~----~~~~~~i~~~~~~~~---~~~l~~~~~~~~~~-~~d 79 (424)
..-..|+|.|+|+ ++++-..+.|++++.+.... +... ....+....+++.|+ +..+.++....... ...
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 3467899999999 66655544488888532211 1101 112345677899885 44444432110000 001
Q ss_pred CeEEEEECCCC--c--EEEEE-e-ec------CCeEEEEecCCceEEEe
Q psy3710 80 NRVMIWDDLKK--Q--VVICL-E-FN------APVKGVRLRRDKIVVVL 116 (424)
Q Consensus 80 ~~i~iwd~~~~--~--~~~~~-~-~~------~~v~~~~~~~~~~~~~~ 116 (424)
..|..++...+ + ....+ . .+ .....++|.||+.+.++
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~ 146 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIA 146 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEE
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEE
Confidence 35666665432 1 11111 1 11 22467999999966665
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.02 E-value=1.4 Score=37.28 Aligned_cols=170 Identities=9% Similarity=0.110 Sum_probs=77.0
Q ss_pred CeEEEEECCCCcEEEEEeec----CCeEEEEecCCceEEEee------c-------cEEEEeecCCCceeEEEeeCCCCC
Q psy3710 80 NRVMIWDDLKKQVVICLEFN----APVKGVRLRRDKIVVVLE------G-------LIKVYTFIQCPQQLHVFETNPNPK 142 (424)
Q Consensus 80 ~~i~iwd~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~------~-------~i~v~~~~~~~~~~~~~~~~~~~~ 142 (424)
..+..||..+++-.. .... ..-.+++...+..+++.. + .+.+||.. +. ....+.....+.
T Consensus 24 ~~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~-~~-~W~~~~~~p~~r 100 (318)
T 2woz_A 24 TAAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNV-SS-EWVGLPPLPSAR 100 (318)
T ss_dssp SEEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETT-TT-EEEECSCBSSCB
T ss_pred cceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCC-CC-cEEECCCCCccc
Confidence 358899998887654 2221 222344444444444331 1 15666764 22 222222211111
Q ss_pred eeEEEeecCCCCeEEEeeccC-------CeEEEEeCCCCCCCCcccccccCC--eEEEEEccCCCEEEEEec------CC
Q psy3710 143 GLCVLCPNSNNSLLAFPGRKS-------GHVHLVDLADPERPPLDIAAHEAP--LSCIALNQTGTRLATASY------KG 207 (424)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~------d~ 207 (424)
...+++.. +++.+++ |+.+ ..+.+||..+.. -..+.....+ -.+++. .+++.++.|+. -.
T Consensus 101 ~~~~~~~~-~~~iyv~-GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 175 (318)
T 2woz_A 101 CLFGLGEV-DDKIYVV-AGKDLQTEASLDSVLCYDPVAAK--WSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTN 175 (318)
T ss_dssp CSCEEEEE-TTEEEEE-EEEBTTTCCEEEEEEEEETTTTE--EEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCC
T ss_pred cccceEEE-CCEEEEE-cCccCCCCcccceEEEEeCCCCC--EeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccc
Confidence 11111211 4566665 6654 357888887641 1111000000 011222 35666677764 24
Q ss_pred cEEEEEECCCcceeeE--Eeccee-eeeecCCCCeEEEEeecC-----CeEEEEeCCCCC
Q psy3710 208 TLIRVFDTGSGQKLNE--LRRGLC-VLCPNSNNSLLAFPGRKS-----GHVHLVDLADPE 259 (424)
Q Consensus 208 ~~i~iwd~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~ 259 (424)
. +.+||+.+.+-... ++.+.. ..+...++ .+++.|+.+ ..+.+||+.+.+
T Consensus 176 ~-~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 176 R-VFIYNPKKGDWKDLAPMKTPRSMFGVAIHKG-KIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp C-EEEEETTTTEEEEECCCSSCCBSCEEEEETT-EEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred e-EEEEcCCCCEEEECCCCCCCcccceEEEECC-EEEEEcCcCCCCccceEEEEECCCCe
Confidence 5 88999987643222 221111 11112234 444445432 357789988754
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.02 E-value=1.5 Score=37.63 Aligned_cols=225 Identities=11% Similarity=0.041 Sum_probs=113.2
Q ss_pred CeeeEEEeccCceEEEEeCCcCCCcCCCeEEEEECCCCcEEEE--Ee-----ecCCeEEEEecCC----ce-EEEe----
Q psy3710 53 GLGHVEMLFRCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVIC--LE-----FNAPVKGVRLRRD----KI-VVVL---- 116 (424)
Q Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~--~~-----~~~~v~~~~~~~~----~~-~~~~---- 116 (424)
.-..+++.|++..+++-- ..+.|++++..+++.... +. .......++++|+ +. ++..
T Consensus 33 ~P~~ia~~pdG~llVter-------~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSR-------DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp SEEEEEECTTSCEEEEET-------TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred CceEEEEcCCCcEEEEEe-------cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 456799999998665543 258999998766654221 11 2456789999985 43 3332
Q ss_pred eccEEEEeecCC----C---ceeEEEeeC--CCCCeeEEEeecCCCCeEEEeec------------cCCeEEEEeCCCCC
Q psy3710 117 EGLIKVYTFIQC----P---QQLHVFETN--PNPKGLCVLCPNSNNSLLAFPGR------------KSGHVHLVDLADPE 175 (424)
Q Consensus 117 ~~~i~v~~~~~~----~---~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~------------~dg~i~i~d~~~~~ 175 (424)
++.|.-|.+... . .....+... ........+.|.|||.+.++.|. ..|.|.-.+....-
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 445655655421 0 111111111 11112345788999987776442 23555555654310
Q ss_pred ---C----CCcccccccCCeEEEEEccCCCEEEEEe-cCCcEEEEEECCCcc------------------eeeEEecc--
Q psy3710 176 ---R----PPLDIAAHEAPLSCIALNQTGTRLATAS-YKGTLIRVFDTGSGQ------------------KLNELRRG-- 227 (424)
Q Consensus 176 ---~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~~i~iwd~~~~~------------------~~~~~~~~-- 227 (424)
. ......+|. ....++|+|+|.+.++-. .++. =.|--+..+. ++..+..+
T Consensus 186 p~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~-deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 186 APGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTW-DELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp CTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSC-EEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred cCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCC-ceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 0 011122443 356899999876655432 2221 2222222221 11122111
Q ss_pred -eeeeeecCCCCeEEEEeecCCeEEEEeCCCCC---CCCeeeccCCCCeEEEEEcCCCCEEEEEe
Q psy3710 228 -LCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE---RPPLDIAAHEAPLSCIALNQTGTRLATAS 288 (424)
Q Consensus 228 -~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 288 (424)
...+++. ...++.+.-..+.|....+.... .....+.+....+..++..|||.++++.+
T Consensus 264 ap~G~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 264 SPSGIAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CEEEEEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCcceEEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 1122222 23444444455666666665432 11223334456788899999887655544
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=1.1 Score=35.53 Aligned_cols=105 Identities=9% Similarity=0.057 Sum_probs=65.2
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEEECCCcce------eeEEe----cceeeeeecCCCCeEEEEeecCCeEEEEeC
Q psy3710 186 APLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK------LNELR----RGLCVLCPNSNNSLLAFPGRKSGHVHLVDL 255 (424)
Q Consensus 186 ~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~------~~~~~----~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~ 255 (424)
..+..++|+|+|.+.+. .++. ++-.+..+... -..+- .....+.+.+++..+++ .||.|+-++.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~-Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav---~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDK-IYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV---SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTE-EEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE---ETTEEEEESC
T ss_pred ccceeEEECCCccEEEE--eCCe-EEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe---CCCEEEEeCC
Confidence 46789999999875555 6777 77777655211 12221 11467788888877765 6699988876
Q ss_pred CCCCCCC-----eee-ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEC
Q psy3710 256 ADPERPP-----LDI-AAHEAPLSCIALNQTGTRLATASYKGTLIRVFDT 299 (424)
Q Consensus 256 ~~~~~~~-----~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~ 299 (424)
.+..... ..+ ..-=..+..|.|.|+|.+.+.. |+. ++-...
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~-lyr~~~ 161 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ-FYKALP 161 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE-EEEECC
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCc-EEecCC
Confidence 4432111 011 0111467999999999877766 776 544433
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=94.45 E-value=2.9 Score=38.22 Aligned_cols=194 Identities=7% Similarity=-0.008 Sum_probs=109.5
Q ss_pred CCCCeeEeecCCe--EEEEeCCcCcccccccc-cCCCeeeEEEe--ccCceEEEEeCCcCCCcCC------------CeE
Q psy3710 20 QDQGCFACGMEDG--FRIYNCDPLKEKERQDF-TDGGLGHVEML--FRCNYLALVGGGTHPKYPN------------NRV 82 (424)
Q Consensus 20 ~~g~~la~g~~~~--i~iw~~~~~~~~~~~~~-~~~~i~~~~~~--~~~~~l~~~~~~~~~~~~d------------~~i 82 (424)
.||++|..-.... |-..+++..++....+. ....+..+.+. |+..+++..+.-..|.-.| +..
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f 219 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMY 219 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEE
Confidence 3678888766444 88888888777444333 24456666665 5777776665332211112 122
Q ss_pred EEEECCCCcEEEEEeecCCeEEEEecCCceEEEe------------------ec-------------------------c
Q psy3710 83 MIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVL------------------EG-------------------------L 119 (424)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------------------~~-------------------------~ 119 (424)
...|.++.+...++...+....+...+++.+.++ .. .
T Consensus 220 ~~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~g 299 (638)
T 3sbq_A 220 NAIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSK 299 (638)
T ss_dssp EEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred EEEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCC
Confidence 2235555565555443333333333444433332 01 2
Q ss_pred EEEEeecC----CCceeEEEeeCCCCCeeEEEeecCCCCeEEEeeccCCeEEEEeCCCCC-----CC-------Cccccc
Q psy3710 120 IKVYTFIQ----CPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE-----RP-------PLDIAA 183 (424)
Q Consensus 120 i~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dg~i~i~d~~~~~-----~~-------~~~~~~ 183 (424)
+.|.|.+. .......+.....|. .+..+|||++++++|-.+.++.++|+++.. +. .....
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~pksPH---Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e- 375 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPVPKNPH---GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE- 375 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEESSSCC---CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-
T ss_pred eeEEccccccccCCceEEEEeCCCCCc---ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-
Confidence 34444431 112233333333333 347799999999988889999999988420 11 01111
Q ss_pred ccCCeEEEEEccCCCEEEEEecCCcEEEEEECCCc
Q psy3710 184 HEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSG 218 (424)
Q Consensus 184 ~~~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~ 218 (424)
-.-.....+|.++|....+.--|.. |.-|++...
T Consensus 376 ~GlGPlHt~Fd~~G~aYTtlfidSq-vvkWni~~a 409 (638)
T 3sbq_A 376 LGLGPLHTTFDGRGNAYTTLFIDSQ-VVKWNMEEA 409 (638)
T ss_dssp CCSCEEEEEECSSSEEEEEETTTTE-EEEEEHHHH
T ss_pred CCCcccEEEECCCCceEeeeeecce-EEEEeccHH
Confidence 1233567899999965566668888 999999753
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.82 E-value=2.7 Score=35.51 Aligned_cols=187 Identities=13% Similarity=0.089 Sum_probs=83.1
Q ss_pred eeEeecCCeEEEEeCCcCcccccccc-cCCCeeeEEEeccCceEEEEeCCcC-C----CcCCCeEEEEECCCCcEEEEEe
Q psy3710 24 CFACGMEDGFRIYNCDPLKEKERQDF-TDGGLGHVEMLFRCNYLALVGGGTH-P----KYPNNRVMIWDDLKKQVVICLE 97 (424)
Q Consensus 24 ~la~g~~~~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~-~----~~~d~~i~iwd~~~~~~~~~~~ 97 (424)
+++.|+ ..+..||..+.+-...... +.... ..+....++.+.+.+|... . ......+.++|..+++-...-.
T Consensus 18 i~~~GG-~~~~~yd~~~~~W~~~~~~~~~~r~-~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVND-TAAVAYDPMENECYLTALAEQIPRN-HSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECS-SEEEEEETTTTEEEEEEECTTSCSS-EEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhccc-cceEEECCCCCceecccCCccCCcc-ceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 344444 3488999877665321111 11122 2223334555666665210 0 0011237888987776543222
Q ss_pred ecC--CeEEEEecCCceEEEe--e-------ccEEEEeecCCCceeEEEeeCCCCCeeEEEeecCCCCeEEEeecc----
Q psy3710 98 FNA--PVKGVRLRRDKIVVVL--E-------GLIKVYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRK---- 162 (424)
Q Consensus 98 ~~~--~v~~~~~~~~~~~~~~--~-------~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 162 (424)
.+. .-.+++...+..+++. + ..+.+||.. +.+ ...+.....+..-.+.+. .+++.+++ |+.
T Consensus 96 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~-~~~-W~~~~~~p~~r~~~~~~~-~~~~iyv~-GG~~~~~ 171 (318)
T 2woz_A 96 LPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPV-AAK-WSEVKNLPIKVYGHNVIS-HNGMIYCL-GGKTDDK 171 (318)
T ss_dssp BSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETT-TTE-EEEECCCSSCEESCEEEE-ETTEEEEE-CCEESSS
T ss_pred CCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCC-CCC-EeECCCCCCcccccEEEE-ECCEEEEE-cCCCCCC
Confidence 211 1223333344444443 1 347777764 322 222221111111111222 35666666 654
Q ss_pred --CCeEEEEeCCCCCC-CCcccccccCCeEEEEEccCCCEEEEEecC-----CcEEEEEECCCcc
Q psy3710 163 --SGHVHLVDLADPER-PPLDIAAHEAPLSCIALNQTGTRLATASYK-----GTLIRVFDTGSGQ 219 (424)
Q Consensus 163 --dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~~i~iwd~~~~~ 219 (424)
...+.+||+.+..- .+..+...... .+++. -+++.++.|+.+ .. +.+||+.+.+
T Consensus 172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~-~~~yd~~~~~ 233 (318)
T 2woz_A 172 KCTNRVFIYNPKKGDWKDLAPMKTPRSM-FGVAI-HKGKIVIAGGVTEDGLSAS-VEAFDLKTNK 233 (318)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEEEEEETTEEEEE-EEEEETTTCC
T ss_pred CccceEEEEcCCCCEEEECCCCCCCccc-ceEEE-ECCEEEEEcCcCCCCccce-EEEEECCCCe
Confidence 24588999876410 00001111111 12222 256677777643 24 7789987764
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=93.73 E-value=3.7 Score=36.85 Aligned_cols=105 Identities=9% Similarity=0.021 Sum_probs=58.9
Q ss_pred cCCeEEEEecCCceEEEe--e-ccEEEEeecCCCceeE--EEeeC----CCCCeeEEEeecCC---CCeEEEeecc----
Q psy3710 99 NAPVKGVRLRRDKIVVVL--E-GLIKVYTFIQCPQQLH--VFETN----PNPKGLCVLCPNSN---NSLLAFPGRK---- 162 (424)
Q Consensus 99 ~~~v~~~~~~~~~~~~~~--~-~~i~v~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~---~~~l~~~~~~---- 162 (424)
-...+.++|.|++.++++ . +.|.+++.. ++.... .+... ....+...++++|+ +..|.++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~-~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPE-SGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECC-CCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 346789999999988877 3 357777643 233221 12110 12345678999996 5556552322
Q ss_pred --------CCeEEEEeCCCCCC------CCc-ccc-cccCCeEEEEEccCCCEEEEEe
Q psy3710 163 --------SGHVHLVDLADPER------PPL-DIA-AHEAPLSCIALNQTGTRLATAS 204 (424)
Q Consensus 163 --------dg~i~i~d~~~~~~------~~~-~~~-~~~~~v~~~~~~~~~~~l~~~~ 204 (424)
...|.-++...... .+. .+. ........|+|.|||.+.++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 23565565543211 011 111 1123478999999998777654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.05 E-value=6.2 Score=37.74 Aligned_cols=105 Identities=11% Similarity=0.052 Sum_probs=55.8
Q ss_pred CCCeEEEeeccC------CeEEEEeCCCCCC-CCcccccccCCeEEEEEccCCCEEEEEecCC--cEEEEEECCCcceee
Q psy3710 152 NNSLLAFPGRKS------GHVHLVDLADPER-PPLDIAAHEAPLSCIALNQTGTRLATASYKG--TLIRVFDTGSGQKLN 222 (424)
Q Consensus 152 ~~~~l~~~~~~d------g~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~~i~iwd~~~~~~~~ 222 (424)
+++.+++ |+.+ ..+.+||..+..- .+..+... ..-.+++...+++.++.|+.++ . +.+||..+.+-..
T Consensus 451 ~~~lyv~-GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~-R~~h~~~~~~~~~iyv~GG~~~~~~-v~~yd~~t~~W~~ 527 (695)
T 2zwa_A 451 NNQLLLI-GGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT-RFRHSACSLPDGNVLILGGVTEGPA-MLLYNVTEEIFKD 527 (695)
T ss_dssp TTEEEEE-CCBSSTTCBCCCCEEEETTTTEEEECCCCSBC-CBSCEEEECTTSCEEEECCBCSSCS-EEEEETTTTEEEE
T ss_pred CCEEEEE-cCCCCCCCccccEEEEeCCCCcEEECCCCCCC-cccceEEEEcCCEEEEECCCCCCCC-EEEEECCCCceEE
Confidence 5666666 7643 3578888876310 00011111 1112333334778888887654 6 8999998765322
Q ss_pred EE-----ecc---eeeeeecCCCCeEEEEeec-------CCeEEEEeCCCCC
Q psy3710 223 EL-----RRG---LCVLCPNSNNSLLAFPGRK-------SGHVHLVDLADPE 259 (424)
Q Consensus 223 ~~-----~~~---~~~~~~~~~~~~~~~~~~~-------dg~i~i~d~~~~~ 259 (424)
.- +.+ ...+.+......+++.|+. .+.+.+||+.+..
T Consensus 528 ~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 528 VTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred ccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 21 111 2223444443445554654 2468889988765
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=6.3 Score=37.68 Aligned_cols=197 Identities=12% Similarity=0.050 Sum_probs=92.6
Q ss_pred CCCCeeEeecCC-----eEEEEeCCcCcccccc-c-----ccCCCeeeEEEecc-CceEEEEeCCcCCCcCCCeEEEEEC
Q psy3710 20 QDQGCFACGMED-----GFRIYNCDPLKEKERQ-D-----FTDGGLGHVEMLFR-CNYLALVGGGTHPKYPNNRVMIWDD 87 (424)
Q Consensus 20 ~~g~~la~g~~~-----~i~iw~~~~~~~~~~~-~-----~~~~~i~~~~~~~~-~~~l~~~~~~~~~~~~d~~i~iwd~ 87 (424)
.++..++.|+.+ .+.+||..+.+-.... . .+............ ++.+.+.||...+...-+.+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456666666532 2888887766543222 1 12222222223331 4455566654322111246889998
Q ss_pred CCCcEEEEEe--ecCCeEEEEe-cCCceEEEe----eccEEEEeecCCCceeEEEee----CCCCCeeEEEeecCC-CCe
Q psy3710 88 LKKQVVICLE--FNAPVKGVRL-RRDKIVVVL----EGLIKVYTFIQCPQQLHVFET----NPNPKGLCVLCPNSN-NSL 155 (424)
Q Consensus 88 ~~~~~~~~~~--~~~~v~~~~~-~~~~~~~~~----~~~i~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~ 155 (424)
.+.+-...-. ....-.+++. ..+..+++. .+.+.+||.. +.. ...+.. ........++.+..+ ++.
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~-t~~-W~~~~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVT-EEI-FKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETT-TTE-EEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECC-CCc-eEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence 8765443222 1222223333 333344443 1268888875 332 222221 111122223444444 556
Q ss_pred EEEeecc-------CCeEEEEeCCCCCC--C--Cccccc---ccCCeEEEEEccCCCEEEEEec--------CCcEEEEE
Q psy3710 156 LAFPGRK-------SGHVHLVDLADPER--P--PLDIAA---HEAPLSCIALNQTGTRLATASY--------KGTLIRVF 213 (424)
Q Consensus 156 l~~~~~~-------dg~i~i~d~~~~~~--~--~~~~~~---~~~~v~~~~~~~~~~~l~~~~~--------d~~~i~iw 213 (424)
+++ |+. ...+.+||+.+..- . -..+.. ....-.++....+++.++.|+. ... +.+|
T Consensus 554 yv~-GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~-v~~y 631 (695)
T 2zwa_A 554 IIL-GGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNS-IISL 631 (695)
T ss_dssp EEE-CCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTS-EEEE
T ss_pred EEE-CCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCe-EEEE
Confidence 665 765 24688999887531 0 011111 1111112333333667777764 245 7888
Q ss_pred ECCCcce
Q psy3710 214 DTGSGQK 220 (424)
Q Consensus 214 d~~~~~~ 220 (424)
|+.+.+-
T Consensus 632 d~~t~~W 638 (695)
T 2zwa_A 632 DPLSETL 638 (695)
T ss_dssp ETTTTEE
T ss_pred ECCCCeE
Confidence 8876643
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=91.44 E-value=8.4 Score=35.31 Aligned_cols=91 Identities=8% Similarity=0.047 Sum_probs=63.6
Q ss_pred EEEEECCC----c-ceeeEEe--cceeeeeecCCCCeEEEEeecCCeEEEEeCCCCC-----CC------CeeeccCCCC
Q psy3710 210 IRVFDTGS----G-QKLNELR--RGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPE-----RP------PLDIAAHEAP 271 (424)
Q Consensus 210 i~iwd~~~----~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~-----~~------~~~~~~~~~~ 271 (424)
+.+.|.+. + ....-++ .....+.++|+|++++++|-.+.++.++|.+... .. +..-..-.-.
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlG 379 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLG 379 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSC
T ss_pred eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCc
Confidence 78888876 2 2233333 2356678899999999999999999999998421 00 0111123445
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEECCC
Q psy3710 272 LSCIALNQTGTRLATASYKGTLIRVFDTGS 301 (424)
Q Consensus 272 v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~ 301 (424)
....+|.++|....+.--|.. |.-|++..
T Consensus 380 PlHt~Fd~~G~aYTtlfidSq-vvkWni~~ 408 (638)
T 3sbq_A 380 PLHTTFDGRGNAYTTLFIDSQ-VVKWNMEE 408 (638)
T ss_dssp EEEEEECSSSEEEEEETTTTE-EEEEEHHH
T ss_pred ccEEEECCCCceEeeeeecce-EEEEeccH
Confidence 678899999965666668888 99999865
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=87.67 E-value=20 Score=34.29 Aligned_cols=236 Identities=8% Similarity=-0.008 Sum_probs=120.5
Q ss_pred EEEE-ECCCCCeeEee----cCCe--EEEEeCCcCccccccccc-CC--------CeeeEEEeccCceEEEEeC-Cc---
Q psy3710 14 LYAG-FNQDQGCFACG----MEDG--FRIYNCDPLKEKERQDFT-DG--------GLGHVEMLFRCNYLALVGG-GT--- 73 (424)
Q Consensus 14 ~~~~-~s~~g~~la~g----~~~~--i~iw~~~~~~~~~~~~~~-~~--------~i~~~~~~~~~~~l~~~~~-~~--- 73 (424)
..+. ++|++++++.+ +.+- ++++|+++++.+.. .+. .. ....++|. +.+.+.+... +.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCB
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-CcccccccccccccccceeeEE-CCCEEEEEeCCCCCCc
Confidence 3445 89999988853 2222 99999999877532 111 11 12446887 4444444321 10
Q ss_pred CCCcCCCeEEEEECCCCc--EEEEEee-cCCe-EEEEecCCce-----EEEe------eccEEEEeecCCCceeEEEeeC
Q psy3710 74 HPKYPNNRVMIWDDLKKQ--VVICLEF-NAPV-KGVRLRRDKI-----VVVL------EGLIKVYTFIQCPQQLHVFETN 138 (424)
Q Consensus 74 ~~~~~d~~i~iwd~~~~~--~~~~~~~-~~~v-~~~~~~~~~~-----~~~~------~~~i~v~~~~~~~~~~~~~~~~ 138 (424)
.......+|+.|.+-+.. -...+.. ...+ .....++++. .+++ ...+.+.+.......+..+...
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 289 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMP 289 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSC
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecC
Confidence 011124689999876542 2222332 2222 2344445443 2322 2455666653222233333222
Q ss_pred CCCCeeEEEeecCCCCeEEEee---------ccCCeEEEEeCCCCC------CCCcc-c-ccccCCeEEEEEccCCCEEE
Q psy3710 139 PNPKGLCVLCPNSNNSLLAFPG---------RKSGHVHLVDLADPE------RPPLD-I-AAHEAPLSCIALNQTGTRLA 201 (424)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~---------~~dg~i~i~d~~~~~------~~~~~-~-~~~~~~v~~~~~~~~~~~l~ 201 (424)
.. .. +..+.++.+++.+. ...+.|...++.+.. ..... + ......+..+.+..+ ..++
T Consensus 290 ~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 290 SD-AT---LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFL 364 (711)
T ss_dssp TT-CE---EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred Cc-ce---EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence 21 11 12233555555321 246778899987631 11222 2 122345778888875 5666
Q ss_pred EEecCCc-EEEEEECCCcc-eeeE---Ee--cceeeeeecCCCCeEEEEee---cCCeEEEEeCC
Q psy3710 202 TASYKGT-LIRVFDTGSGQ-KLNE---LR--RGLCVLCPNSNNSLLAFPGR---KSGHVHLVDLA 256 (424)
Q Consensus 202 ~~~~d~~-~i~iwd~~~~~-~~~~---~~--~~~~~~~~~~~~~~~~~~~~---~dg~i~i~d~~ 256 (424)
+...++. .+.++|+.+++ .... ++ +.+......+++..++++.+ .-+.++.+|+.
T Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 365 ATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6666664 26677766654 2233 22 22444555677777766544 34678888876
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=87.27 E-value=25 Score=35.01 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=33.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEECCCCceeeee
Q psy3710 270 APLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNEL 308 (424)
Q Consensus 270 ~~v~~~~~~~~~~~l~~~~~d~~~i~iwd~~~~~~~~~~ 308 (424)
..+.+++..++..++++-+.|++ +|+|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~-LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYK-LKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCE-EEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCE-EEEEECCCCCeEeee
Confidence 35677888888899999999999 999999999998864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 424 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-11 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-04 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-04 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.001 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.004 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.001 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.002 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.003 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.3 bits (147), Expect = 6e-11
Identities = 36/286 (12%), Positives = 82/286 (28%), Gaps = 13/286 (4%)
Query: 18 FNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKY 77
+ D +DG ++ D + + + + +
Sbjct: 63 WGTDSRLLVSASQDG-KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA---CGGLD 118
Query: 78 PNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHVFET 137
+ + V + E + R + T + T
Sbjct: 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT 178
Query: 138 NPNPKGLCVLCPNSNN-SLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT 196
V+ + + L G L D+ + HE+ ++ I
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPN 237
Query: 197 GTRLATASYKGTL----IRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGRKSGHVHL 252
G AT S T +R + + G+ + + + LL G + ++
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYDDFNCNV 296
Query: 253 VDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298
D + +A H+ +SC+ + G +AT S+ +++++
Sbjct: 297 WDALKAD-RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF-LKIWN 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.1 bits (136), Expect = 1e-09
Identities = 36/304 (11%), Positives = 95/304 (31%), Gaps = 34/304 (11%)
Query: 18 FNQDQGCFACGMEDGF-RIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPK 76
F+ ED ++++ + + GH + + ++
Sbjct: 25 FHPVFSVMVSASEDATIKVWDYETGDFERTLK------GHTDSVQDISFDHSGKLLASCS 78
Query: 77 YPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHVFE 136
+ + + + V V + + +V K + V
Sbjct: 79 ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT 138
Query: 137 TNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQT 196
+ + + ++ PN + +L+A V + +A E ++ H + CI+
Sbjct: 139 FTGHREWVRMVRPNQDGTLIAS-CSNDQTVRVWVVATKE-CKAELREHRHVVECISWAPE 196
Query: 197 GTRLATASYKGTL-------------------IRVFDTGSGQKLNELR---RGLCVLCPN 234
+ + + G+ I+++D +G L L + + +
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256
Query: 235 SNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLI 294
S + + + D + + AHE ++ + ++T + T S T +
Sbjct: 257 SGGKFILS-CADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT-V 313
Query: 295 RVFD 298
+V++
Sbjct: 314 KVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.6 bits (114), Expect = 7e-07
Identities = 35/243 (14%), Positives = 81/243 (33%), Gaps = 19/243 (7%)
Query: 173 DPERPPL-DIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR-RGLCV 230
P P ++ H +P++ + + + + +AS T I+V+D +G L+ V
Sbjct: 4 IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDAT-IKVWDYETGDFERTLKGHTDSV 62
Query: 231 LCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYK 290
+ ++S + + + H+ +S +++ G + +AS
Sbjct: 63 QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 122
Query: 291 GTLIRVFDTGSGQKLNELR------------RDSSYLCVSSDHGTVHVFSVDEAQKINKQ 338
T I++++ +G + +D + + S+ TV V+ V +
Sbjct: 123 KT-IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK--- 178
Query: 339 SSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGE 398
+ L + + S + I ++ + K S G
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238
Query: 399 CWR 401
C
Sbjct: 239 CLM 241
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.2 bits (118), Expect = 2e-07
Identities = 29/283 (10%), Positives = 68/283 (24%), Gaps = 22/283 (7%)
Query: 133 HVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD-IAAHEAPLSCI 191
H F P + N + + +A + VH+ + + + + + H ++ +
Sbjct: 3 HSFLVEP----ISCHAWNKDRTQIAI-CPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGV 57
Query: 192 ALNQTGTRLATASYKGTLIRVFDTGSGQKL----NELRRGLCVLCPNSNNSLLAFPGRKS 247
R+ T V+ + N G S
Sbjct: 58 DWAPDSNRIVTCGTDRN-AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS 116
Query: 248 GHVHLVDLADPER---PPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQK 304
+ + + + + + LA S R+F +
Sbjct: 117 RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK-CRIFSAYIKEV 175
Query: 305 LNELRR-------DSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSF 357
L S V V + ++ + ++ S + +
Sbjct: 176 EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA 235
Query: 358 CKFQIPSDPPCICAFGADSNSIIVICADGSYYKFMFNSKGECW 400
P + +S++ D F ++S
Sbjct: 236 VATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKL 278
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.7 bits (101), Expect = 3e-05
Identities = 17/151 (11%), Positives = 39/151 (25%), Gaps = 15/151 (9%)
Query: 271 PLSCIALNQTGTRLATASYKGTLIRVFD--TGSGQKLNELR------------RDSSYLC 316
P+SC A N+ T++A + +++ +++EL+ DS+ +
Sbjct: 9 PISCHAWNKDRTQIAICPNNHE-VHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67
Query: 317 VSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADS 376
+V+++ L + +
Sbjct: 68 TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE 127
Query: 377 NSIIVICADGSYYKFMFNSKGECWRDVYIQF 407
N V + S V +
Sbjct: 128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 158
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 47.5 bits (111), Expect = 1e-06
Identities = 32/319 (10%), Positives = 73/319 (22%), Gaps = 42/319 (13%)
Query: 25 FACGMEDG-FRIYNCDPLKEKERQDFTDG-----GLGHVEMLFRCNYLALVGGGT----- 73
+A + + + R D + L + LA+
Sbjct: 49 YATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELT 108
Query: 74 HPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLH 133
H + RV ++D E + + RD + G + +
Sbjct: 109 HFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVE 168
Query: 134 VFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIAL 193
P+
Sbjct: 169 DKPIQSWEAETYA-QPDVLAVWNQHESSGVMATPFY----------------------TA 205
Query: 194 NQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLC-PNSNNSLLAFPGRKSGHVHL 252
+ +Y+ + D +G+ R + V + N +
Sbjct: 206 RKDIDPADPTAYRTG-LLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLES 264
Query: 253 VDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDS 312
DL + + ++ G+ + G + +D + +K ++
Sbjct: 265 FDLEKNA--SIKRVPLPHSYYSVNVSTDGSTVWLGGALGD-LAAYDAETLEKKGQVDLPG 321
Query: 313 SYLCVSSDHGTVHVFSVDE 331
+ S +V +F+ DE
Sbjct: 322 N---ASMSLASVRLFTRDE 337
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.3 bits (103), Expect = 1e-05
Identities = 15/130 (11%), Positives = 37/130 (28%), Gaps = 10/130 (7%)
Query: 184 HEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG----LCVLCPNSNNSL 239
+ ATA D +G+ + + +
Sbjct: 207 FSMLYTIARFKDDKQDPATADLLYG-YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN 265
Query: 240 LAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDT 299
+ + DL + + A + C+A ++ G +L + VF+
Sbjct: 266 QIYGV--LNRLAKYDLKQRK--LIKAANLDHTYYCVAFDKKGDKLYLGGTFND-LAVFNP 320
Query: 300 GSGQKLNELR 309
+ +K+ ++
Sbjct: 321 DTLEKVKNIK 330
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 40.5 bits (93), Expect = 2e-04
Identities = 12/95 (12%), Positives = 32/95 (33%), Gaps = 5/95 (5%)
Query: 131 QLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSC 190
+ H E + + + + + DL + + A + C
Sbjct: 241 KTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK--LIKAANLDHTYYC 296
Query: 191 IALNQTGTRLATASYKGTLIRVFDTGSGQKLNELR 225
+A ++ G +L + VF+ + +K+ ++
Sbjct: 297 VAFDKKGDKLYLGGTFND-LAVFNPDTLEKVKNIK 330
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.6 bits (101), Expect = 2e-05
Identities = 36/324 (11%), Positives = 75/324 (23%), Gaps = 52/324 (16%)
Query: 18 FNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEML----------------F 61
F+ D A G ++Y R E L F
Sbjct: 70 FSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF 129
Query: 62 RCNYLALVGGGTHPKYPNNRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIK 121
+ L G + + + + + G
Sbjct: 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG---SGDRT 186
Query: 122 VYTFIQCPQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER----- 176
V + Q + + + + P + A G V + D
Sbjct: 187 VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA--GSLDRAVRVWDSETGFLVERLD 244
Query: 177 -PPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL-------------- 221
H+ + + + G + + S + +++++ +
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANNKSDSKTPNSGTCEVT 303
Query: 222 -NELRRGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIA---- 276
+ + + N+ + G K V D P L + H + +A
Sbjct: 304 YIGHKDFVLSVATTQNDEYILS-GSKDRGVLFWDKKSGN-PLLMLQGHRNSVISVAVANG 361
Query: 277 --LNQTGTRLATASYKGTLIRVFD 298
L AT S R++
Sbjct: 362 SSLGPEYNVFATGSGDCK-ARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.2 bits (100), Expect = 4e-05
Identities = 35/294 (11%), Positives = 76/294 (25%), Gaps = 34/294 (11%)
Query: 129 PQQLHVFETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAA---HE 185
P + P P L L S L + + + L + A P +++ H
Sbjct: 5 PYNQRANHSKPIPPFLLDLDSQSVPDAL--KKQTNDYYILYNPALPREIDVELHKSLDHT 62
Query: 186 APLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPGR 245
+ + C+ + G LAT K +V+ G + L N + + P
Sbjct: 63 SVVCCVKFSNDGEYLATGCNKT--TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS- 119
Query: 246 KSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKL 305
+ + + + G LAT + + +
Sbjct: 120 ----------------------SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM 157
Query: 306 NELRRDSSYLCVSSDHGTVHVFSVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSD 365
+ + + S + + L +
Sbjct: 158 ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS--PG 215
Query: 366 PPCICAFGADSNSIIVICADGSYYKFMFNSKGECWR--DVYIQFLEMTNDSNLL 417
A G+ ++ V ++ + +S+ E + + T D +
Sbjct: 216 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 269
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.3 bits (97), Expect = 6e-05
Identities = 14/133 (10%), Positives = 34/133 (25%), Gaps = 1/133 (0%)
Query: 268 HEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSYLCVSSDHGTVHVF 327
H ++ ++ + G L +A +G I +D +G + + +
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGH-INSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69
Query: 328 SVDEAQKINKQSSLASASFLPKYFSSSWSFCKFQIPSDPPCICAFGADSNSIIVICADGS 387
K + ++ + + A I I + G
Sbjct: 70 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 129
Query: 388 YYKFMFNSKGECW 400
+ + C
Sbjct: 130 LTEVPISYNSSCV 142
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.7 bits (93), Expect = 2e-04
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 184 HEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRG 227
H ++ ++ + G L +A +G I +D +G
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGH-INSWDISTGISNRVFPDV 53
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (96), Expect = 1e-04
Identities = 32/206 (15%), Positives = 58/206 (28%), Gaps = 20/206 (9%)
Query: 18 FNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGGTHPKY 77
D G D + DP E + F ++
Sbjct: 143 VQYDGRRVVSGAYDFM-VKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSL------ 195
Query: 78 PNNRVMIWD-DLKKQVVICLEFNAPVKGVRLRRDKIVVVLE-GLIKVYTFIQCPQQLHVF 135
+ + +WD + + + G+ L+ + +V +K++ +
Sbjct: 196 -DTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 254
Query: 136 ETNPNPKGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPER----PPLDIAAHEAPLSCI 191
N + + L N N + + G V L DL E L+ + I
Sbjct: 255 GPNKHQSAVTCLQFNKNFVITSS---DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI 311
Query: 192 ALNQTGTRLATASYKGTL---IRVFD 214
+ T A S GT + V D
Sbjct: 312 RASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (88), Expect = 0.001
Identities = 36/227 (15%), Positives = 71/227 (31%), Gaps = 20/227 (8%)
Query: 82 VMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQCPQQLHVFETNPNP 141
V + + V+ A R + + ++KV+ + LH + +
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD-PETETCLHTLQGHT-- 177
Query: 142 KGLCVLCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLA 201
+ + + G + + D+ + + H++ S + L L
Sbjct: 178 ---NRVYSLQFDGIHVVSGSLDTSIRVWDV-ETGNCIHTLTGHQSLTSGMELK--DNILV 231
Query: 202 TASYKGTLIRVFDTGSGQKLNELRRGLC---VLCPNSNNSLLAFPGRKSGHVHLVDLADP 258
+ + T ++++D +GQ L L+ + N G V L DL
Sbjct: 232 SGNADST-VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG 290
Query: 259 ER----PPLDIAAHEAPLSCIALNQTGTRLATASYKGTL---IRVFD 298
E L+ + I + T A S GT + V D
Sbjct: 291 EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 40.6 bits (93), Expect = 2e-04
Identities = 13/142 (9%), Positives = 34/142 (23%), Gaps = 14/142 (9%)
Query: 178 PLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCV------- 230
P I + L Y + + + R + +
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 279
Query: 231 -LCPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASY 289
+ + + + G + D+ + + + L+ + L+ +
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDVKTRK-----VTEVKNNLTDLRLSADRKTVMVRKD 334
Query: 290 KGTLIRVFDTGSGQKLNELRRD 311
G I F + + D
Sbjct: 335 DGK-IYTFPLEKPEDERTVETD 355
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 36.8 bits (83), Expect = 0.004
Identities = 7/77 (9%), Positives = 21/77 (27%), Gaps = 6/77 (7%)
Query: 148 CPNSNNSLLAFPGRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKG 207
+ + + G + D+ + + + L+ + L+ + G
Sbjct: 282 PVHGEFAAYYQGAPEKGVLLKYDVKTRK-----VTEVKNNLTDLRLSADRKTVMVRKDDG 336
Query: 208 TLIRVFDTGSGQKLNEL 224
I F + +
Sbjct: 337 K-IYTFPLEKPEDERTV 352
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (91), Expect = 4e-04
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 267 AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRDSSY------LCVSSD 320
A + +S I + + + L S+ G+ + V+ K +L + Y +
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGS-LTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 321 HGTVHVFS 328
Sbjct: 68 TDLQIYVG 75
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.001
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 183 AHEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGL------CVLCPNSN 236
A + +S I + + + L S+ G+ + V+ K +L + L N
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGS-LTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 237 NSLLAFPGRKSGHVHL 252
L + G G +
Sbjct: 68 TDLQIYVGTVQGEILK 83
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (86), Expect = 0.002
Identities = 8/115 (6%), Positives = 24/115 (20%), Gaps = 44/115 (38%)
Query: 184 HEAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFP 243
HE+ + + G + + + T G + + +
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK------------------ 304
Query: 244 GRKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRLATASYKGTLIRVFD 298
+ + ++ + T S V++
Sbjct: 305 ------------------------ESSSVLSCDISVDDKYIVTGSGDKK-ATVYE 334
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 37.1 bits (84), Expect = 0.003
Identities = 39/322 (12%), Positives = 76/322 (23%), Gaps = 38/322 (11%)
Query: 13 LLYAGFNQDQGCFACGMEDGFRIYNCDPLKEKERQDFTDGGLGHVEMLFRCNYLALVGGG 72
+ D +++ L + D V +L G
Sbjct: 60 FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV--GTYPWMTSLTPDG 117
Query: 73 THPKYPN----NRVMIWDDLKKQVVICLEFNAPVKGVRLRRDKIVVVLEGLIKVYTFIQC 128
+ V + D K L+ D +
Sbjct: 118 KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGT 177
Query: 129 PQQLHVFETNPNPKGLCVL---CPNSNNSLLAFPGRKSGHVHLVDLADPERPPLD-IAAH 184
+ T L S + +G +H +DL+ + L + A
Sbjct: 178 EGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEAL 237
Query: 185 EAPLSCIALNQTGTRLATASYKGTLIRVFDTGSGQKLNELRRGLCVLCPNSNNSLLAFPG 244
G + I + +
Sbjct: 238 TEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW---------------------RHK 276
Query: 245 RKSGHVHLVDLADPERPPLDIAAHEAPLSCIALNQTGTRL--ATASYKGTLIRVFDTGSG 302
S V ++D ER L + I ++Q L A ++ T + + D SG
Sbjct: 277 TASRFVVVLDAKTGER--LAKFEMGHEIDSINVSQDEKPLLYALSTGDKT-LYIHDAESG 333
Query: 303 QKLNELRRDSSY--LCVSSDHG 322
++L + + + ++D G
Sbjct: 334 EELRSVNQLGHGPQVITTADMG 355
|