Psyllid ID: psy3718

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540---
Protein Sequence
MENFFFYRGFNPRILLGRVLLPIGESSFHFDPELLNPSFNGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQGRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTFL
Secondary Structure (PSIPRED)
cccEEEEcccccEEEEcEEEEEccccEEEEEEEEEcccccccccEEEEccccEEEEccccEEEEccccEEEEEEEEEccccEEEEEEccEEccccccccEEEEEEEccccEEEcEEEEEEcccccEEEEEEEEccccccEEEEEEEEcccccccccEEEEEEEccccccccccEEEEccccccccccEEEEEEEEEEEEccccccEEEEEcccccccEEEEEEEEEEcccccccccccEEEEccccccccccccEEEEEccccEEEEEEEccccccccccccEEEEEEEEcccccccEEEEEEEEcccccEEEEEEcccccccEEEEEEEEEcccccccccccEEEEcccccccccccccEEEEEcccEEEEEEEcccccccccEEEEEEEEEEEcccccccccEEEEEEEEEEEccccEEEEEEEEEEEEEEEcccccccccccccccEEEccccccccccEEEEcccEEEEEcccccccccccEEEEEEEEEccccccccccccEEEEEccEEEEEEEccEEEEEEEcccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccEEEccccccEEEEEEEEEcccccEEEEEEEEccccccccEEEEEEcccEEEcccccEEEcccccEEEEEEEEcccccEEEEEEcccEcccccccEEEEEEcccccccEEEEEEEEEEcccccEEEEEEEccccccccEEEEEEEcccccccccccEEEEEEcccccEEEEEEEccccccccEEEEEccEEcccccccEccccEEEEEEcccccccEEEEEEEEEcccccccccEEEEEccccccccccccEEEEEccccEEEEEEccccccccccccEEEEEEEEEccccccccEEEEEEEccccccEEEEEEccccccEEEEEEEEEEcccccccccEEEEEccccccccccccEEEEEccccEEEEEEcccccccccccEEEEEEEEEEcccccccccEEEEEEcccccEEEEEEccccccEEEEEEEEEEccccccccccEEEEEcccccccccccEEEccccEEEEEEcccccccccEEEEEEEcccccccEEEEEcccEEEEcccccccccEEEEEEEEEccccccEEEEEccc
Coil and Loop (DISEMBL)
menfffyrgfnprILLGRvllpigessfhfdpellnpsfngfpplllssappefeIKLRnqtsrrgepsvlqceakgekpigilwnmnnkrldpksdnrytireeilpngvlsdlsikrtergdsalftceiksqkiSSQQMTYEasglkkkqnYIFYVTAstnigegqpsknvtlspsnrvpariasfndnftatytediklpcltvgvpapeiiwKTYHIRIVAeneigssepsdtvtiltaeeapsgppthikveatdqntlkvswspperdhwngVIQGYYVgyketstdkpflfetvdfskeegkehhltlsslkTYTQYSVVVQALnklgpgpmseevkqytaegtpeqppqdntcttltsqtirvswvspplitangviKGYKvvygpsdtwygdpktdictdiraswvspplitangviKGYKvvygpsdtwyghpgsfrnhctwdprgrnMYEELKSqgrgylvprggpppcpgsdetlysrhrgesdkckndrvpariasfndnftatytediklpcltvgvpapEIIWKTFL
Flexible Loop (DISEMBL)
MENFFFYRGFNPRILLGRVLLPIGESSFHFDPELLNPSFNGFPPLLLSSAPPEFEIKLRNqtsrrgepsvlqceakgekpigilwnmnnkrldpksdNRYTIreeilpngvlsdlsiKRTErgdsalftceiksqkissQQMTYEasglkkkqNYIFYVTAstnigegqpsknvtlspsnRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAEneigssepsDTVTILTAEeapsgppthikveatdQNTLKvswspperdhwnGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLtlsslktyTQYSVVVQALNKLGPGPMSEEVKQYTaegtpeqppqdnTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQGRGYLVPRGGPPPCPGSDETLYSRhrgesdkckndrvpariASFNDNFTatytediklpcltvgvpaPEIIWKTFL
Low Complexity Region (SEG)
MENFFFYRGFNPRILLGRVLLPIGESSFHFDPELLNPSFNGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQGRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTFL
Disordered region (IsUnstruct)
***FFFYRGFNPRILLGRVLLPIGESSFHFDPELLNPSFNGFPPLLL*******************************KPIGILWNMNN*********RYTIREEILPNGVLSDLSIKR****DSALFTCEIK**************GLKKKQNYIFYVTASTNI******************ARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENE***************************************W***ERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE**KEHHLTLSSLKTYTQYSVVVQALNK***************************CTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNM*********************************************ARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTF*
Disordered Region (DISOPRED)
**NFFFYRGFNPRILLGRVLLPIGESSFHFDPELLNPSFNGFPPLLLSSAPPEFEIKLR***S*RGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTY**********************EGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIG********************PT*IKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETST*****F**VDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTW**********DIRASWVSPPLITANGVIKGYKVVYGPSD**************************KSQGRGYLVPRGGPPPCPGSDETLYS****************RIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTFL
Disordered Region (DISEMBL)
MENFFFYRGFNPRILLGRVLLPIGESSFHFDPELLNPSFNGFPPLLLSSAPPEFEIKLRNQ**********QCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ**********ASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEE******************CTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQGRGYLVPRGGPPPCPGSDETL************NDRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTFL
Disordered Region (DISPRO)
*ENFFFYRGFNPRILLGRVLLPIGESSFHFDPELLNPSFNGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQGRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTFL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENFFFYRGFNPRILLGRVLLPIGESSFHFDPELLNPSFNGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQGRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	543	2.2.26 [Sep-21-2011]
Q9ERC8	2013	Down syndrome cell adhesi	yes	N/A	0.581	0.156	0.296	3e-36
Q8VHZ8	2013	Down syndrome cell adhesi	yes	N/A	0.581	0.156	0.296	3e-36
O60469	2012	Down syndrome cell adhesi	yes	N/A	0.581	0.157	0.293	1e-35
Q4VA61	2053	Down syndrome cell adhesi	no	N/A	0.318	0.084	0.413	1e-33
Q8TD84	2053	Down syndrome cell adhesi	no	N/A	0.318	0.084	0.413	1e-33
Q9VS29	2074	Down syndrome cell adhesi	no	N/A	0.322	0.084	0.384	2e-30
Q8AV58	2169	Protein sidekick-1 OS=Gal	no	N/A	0.589	0.147	0.270	2e-25
Q7Z5N4	2213	Protein sidekick-1 OS=Hom	no	N/A	0.591	0.145	0.260	2e-22
Q3UH53	2193	Protein sidekick-1 OS=Mus	no	N/A	0.589	0.145	0.265	2e-20
A2A8L5	1898	Receptor-type tyrosine-pr	no	N/A	0.425	0.121	0.293	3e-19

>sp|Q9ERC8|DSCAM_MOUSE Down syndrome cell adhesion molecule homolog OS=Mus musculus GN=Dscam PE=1 SV=1

 Score =  153 bits (387), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 25/341 (7%)

Query: 65   RGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD 124
            +G+   + C A GEKPI + W   ++ ++P+   RY +  + +   V+S L I  T R D
Sbjct: 801  QGQRKEMSCTAHGEKPIIVRWEKEDRIINPEM-ARYLVSTKEVGEEVISTLQILPTVRED 859

Query: 125  SALFTCEIKSQKISSQ---QMTYEAS------GLKKKQNYIFYVTASTNIGEGQPSKNVT 175
            S  F+C   +     +   Q+T +         +K  +     +  +       P     
Sbjct: 860  SGFFSCHAINSYGEDRGIIQLTVQEPPDPPEIEIKDVKARTITLRWTMGFDGNSPITGYD 919

Query: 176  LSPSNRVPARIASFNDNF-TATYTEDI--KLPCLTVGVPAPEIIWKTYHIRIVAENEIGS 232
            +   N+        +D++ +A  T+D+  +L   T+    P     TY IR+ A+N IG 
Sbjct: 920  IECKNK--------SDSWDSAQRTKDVSPQLNSATIIDIHPS---STYSIRMYAKNRIGK 968

Query: 233  SEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETS 292
            SEPS+ +TI   E AP GPP  + +E T   +++V+W  P++   NG+I+GY +GY+E S
Sbjct: 969  SEPSNEITITADEAAPDGPPQEVHLEPTSSQSIRVTWKAPKKHLQNGIIRGYQIGYREYS 1028

Query: 293  TDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGT 352
            T   F F  +      G     TL +L  +TQY +VVQA N+ G GP S+E+   T E  
Sbjct: 1029 TGGNFQFNIISIDT-TGDSEVYTLDNLNKFTQYGLVVQACNRAGTGPSSQEIITTTLEDV 1087

Query: 353  PEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
            P  PP++      + ++I +SW +      NG+++G++V+Y
Sbjct: 1088 PSYPPENVQAIATSPESISISWSTLSKEALNGILQGFRVIY 1128

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.
Mus musculus (taxid: 10090)

>sp|Q8VHZ8|DSCAM_RAT Down syndrome cell adhesion molecule homolog OS=Rattus norvegicus GN=Dscam PE=1 SV=1

 Score =  153 bits (387), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 25/341 (7%)

Query: 65   RGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD 124
            +G+   + C A GEKPI + W   ++ ++P+   RY +  + +   V+S L I  T R D
Sbjct: 801  QGQRKEMSCTAHGEKPIIVRWEKEDRIINPEM-ARYLVSTKEVGEEVISTLQILPTVRED 859

Query: 125  SALFTCEIKSQKISSQ---QMTYEAS------GLKKKQNYIFYVTASTNIGEGQPSKNVT 175
            S  F+C   +     +   Q+T +         +K  +     +  +       P     
Sbjct: 860  SGFFSCHAINSYGEDRGIIQLTVQEPPDPPEIEIKDVKARTITLRWTMGFDGNSPITGYD 919

Query: 176  LSPSNRVPARIASFNDNF-TATYTEDI--KLPCLTVGVPAPEIIWKTYHIRIVAENEIGS 232
            +   N+        +D++ +A  T+D+  +L   T+    P     TY IR+ A+N IG 
Sbjct: 920  IECKNK--------SDSWDSAQRTKDVSPQLNSATIIDIHPS---STYSIRMYAKNRIGK 968

Query: 233  SEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETS 292
            SEPS+ +TI   E AP GPP  + +E T   +++V+W  P++   NG+I+GY +GY+E S
Sbjct: 969  SEPSNEITITADEAAPDGPPQEVHLEPTSSQSIRVTWKAPKKHLQNGIIRGYQIGYREYS 1028

Query: 293  TDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGT 352
            T   F F  +      G     TL +L  +TQY +VVQA N+ G GP S+E+   T E  
Sbjct: 1029 TGGNFQFNIISIDT-TGDSEVYTLDNLNKFTQYGLVVQACNRAGTGPSSQEIITTTLEDV 1087

Query: 353  PEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
            P  PP++      + ++I +SW +      NG+++G++V+Y
Sbjct: 1088 PSYPPENVQAIATSPESISISWSTLSKEALNGILQGFRVIY 1128

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38 (By similarity). Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC.

Rattus norvegicus (taxid: 10116)

>sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1 SV=2

 Score =  151 bits (382), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 168/341 (49%), Gaps = 25/341 (7%)

Query: 65   RGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD 124
            +G+   + C A GEKPI + W   ++ ++P+   RY +  + +   V+S L I  T R D
Sbjct: 801  QGQKKEMSCTAHGEKPIIVRWEKEDRIINPEM-ARYLVSTKEVGEEVISTLQILPTVRED 859

Query: 125  SALFTCEIKSQKISSQ---QMTYEAS------GLKKKQNYIFYVTASTNIGEGQPSKNVT 175
            S  F+C   +     +   Q+T +         +K  +     +  +       P     
Sbjct: 860  SGFFSCHAINSYGEDRGIIQLTVQEPPDPPEIEIKDVKARTITLRWTMGFDGNSPITGYD 919

Query: 176  LSPSNRVPARIASFNDNF-TATYTEDI--KLPCLTVGVPAPEIIWKTYHIRIVAENEIGS 232
            +   N+        +D++ +A  T+D+  +L   T+    P     TY IR+ A+N IG 
Sbjct: 920  IECKNK--------SDSWDSAQRTKDVSPQLNSATIIDIHPS---STYSIRMYAKNRIGK 968

Query: 233  SEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETS 292
            SEPS+ +TI   E AP GPP  + +E     +++V+W  P++   NG+I+GY +GY+E S
Sbjct: 969  SEPSNELTITADEAAPDGPPQEVHLEPISSQSIRVTWKAPKKHLQNGIIRGYQIGYREYS 1028

Query: 293  TDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGT 352
            T   F F  +      G     TL +L  +TQY +VVQA N+ G GP S+E+   T E  
Sbjct: 1029 TGGNFQFNIISVDT-SGDSEVYTLDNLNKFTQYGLVVQACNRAGTGPSSQEIITTTLEDV 1087

Query: 353  PEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
            P  PP++      + ++I +SW +      NG+++G++V+Y
Sbjct: 1088 PSYPPENVQAIATSPESISISWSTLSKEALNGILQGFRVIY 1128

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.

Homo sapiens (taxid: 9606)

>sp|Q4VA61|DSCL1_MOUSE Down syndrome cell adhesion molecule-like protein 1 homolog OS=Mus musculus GN=Dscaml1 PE=1 SV=2

 Score =  145 bits (365), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 104/174 (59%), Gaps = 1/174 (0%)

Query: 220  YHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNG 279
            Y IR+ + N+IG SEPS  +TI T E AP GPP  + ++     +++V+W  P+++  NG
Sbjct: 958  YSIRMYSFNKIGRSEPSKELTISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNG 1017

Query: 280  VIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGP 339
            VI+GY +GY+E S      +  V+  K  G     TL +LK + QY VVVQA N+ G GP
Sbjct: 1018 VIRGYQIGYRENSPGSNGQYSIVEM-KATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGP 1076

Query: 340  MSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
             S E+   T E  P QPP++    ++TS    +SW  PP  T NGV+KGY+V++
Sbjct: 1077 SSSEINATTLEDVPSQPPENVRALSITSDVAVISWSEPPRSTLNGVLKGYRVIF 1130

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Promotes both isoneuronal self-avoidance for creating an orderly neurite arborization in retinal rod bipolar cells and heteroneuronal self-avoidance to maintain mosaic spacing between AII amacrine cells.

Mus musculus (taxid: 10090)

>sp|Q8TD84|DSCL1_HUMAN Down syndrome cell adhesion molecule-like protein 1 OS=Homo sapiens GN=DSCAML1 PE=1 SV=2

 Score =  144 bits (364), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 104/174 (59%), Gaps = 1/174 (0%)

Query: 220  YHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNG 279
            Y IR+ + N+IG SEPS  +TI T E AP GPP  + ++     +++V+W  P+++  NG
Sbjct: 958  YSIRMYSFNKIGRSEPSKELTISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNG 1017

Query: 280  VIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGP 339
            VI+GY +GY+E S      +  V+  K  G     TL +LK + QY VVVQA N+ G GP
Sbjct: 1018 VIRGYQIGYRENSPGSNGQYSIVEM-KATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGP 1076

Query: 340  MSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
             S E+   T E  P QPP++    ++TS    +SW  PP  T NGV+KGY+V++
Sbjct: 1077 SSSEINATTLEDVPSQPPENVRALSITSDVAVISWSEPPRSTLNGVLKGYRVIF 1130

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Promotes both isoneuronal self-avoidance for creating an orderly neurite arborization in retinal rod bipolar cells and heteroneuronal self-avoidance to maintain mosaic spacing between AII amacrine cells.

Homo sapiens (taxid: 9606)

>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2 OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3

 Score =  134 bits (337), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/177 (38%), Positives = 103/177 (58%), Gaps = 2/177 (1%)

Query: 220  YHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNG 279
            Y  R++AE   G S PS  + + T  + P+GPP  +         L +SW  P  +  +G
Sbjct: 977  YAFRVIAEGSAGRSAPSQELIVRTEPQRPAGPPLSLSARPLSSTELLISWVAPLPELRHG 1036

Query: 280  VIQGYYVGYKETST-DKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPG 338
             IQGY VGYK +S+ +  + F +V     +G    L LS L  + +Y+VVVQA N++GPG
Sbjct: 1037 DIQGYNVGYKLSSSGNTAYNFTSVS-GDGDGGNGELLLSGLAKFARYTVVVQAFNQVGPG 1095

Query: 339  PMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
            P+SE     T E  P +PP+D  C  L+SQ+++VSW  PP+   NG+++GYK+++ P
Sbjct: 1096 PLSEPTAAQTMEDVPSRPPEDVRCAALSSQSLQVSWQPPPIYHTNGLLQGYKLIFEP 1152

Cell adhesion molecule.

Drosophila melanogaster (taxid: 7227)

>sp|Q8AV58|SDK1_CHICK Protein sidekick-1 OS=Gallus gallus GN=SDK1 PE=2 SV=1

 Score =  117 bits (293), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 162/362 (44%), Gaps = 42/362 (11%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGI--LWNMNNKRLDPKSDNRYTIREEILP 108
           PPE      N T  +G  + L+CEA  +  I I  +W  ++  ++P S +R T+ ++   
Sbjct: 531 PPE------NSTVIKGTTATLRCEATHDPRISIRYVWKKDSVVINPSSSSRITVEKD--- 581

Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMT-YEASGLKKK-QNYIFYVTASTNIG 166
                 L I +T  GD   +TCE+ S   +  +M   E   L    QN +  + +S    
Sbjct: 582 ----GTLLISQTWSGDIGDYTCEVISFGGNDSRMARLEVIELPHSPQNLLATLNSSY--- 634

Query: 167 EGQPSKNVTLS---------PSNRVPARIASFNDNFTATYTE-DIKLPCLTVGVPAPEII 216
               S++V LS         P       ++  N  +    +  D K+  +TV    P   
Sbjct: 635 ----SRSVVLSWVRPFDGNSPVLYYMVELSENNSPWKVHLSNLDPKMTSVTVSGLTPA-- 688

Query: 217 WKTYHIRIVAENEIGSSE-PSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
            +TY  R+ A N++G  +  S+T  ++  EE PS PP +I        ++ V W PP   
Sbjct: 689 -RTYQFRVCAVNQVGKGQYSSETSRLMLPEEPPSAPPKNIVASGRTNQSIMVQWQPPPES 747

Query: 276 HWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKL 335
             NGV+ GY + Y+       + ++ +       + ++  ++ L  +TQY + V + N  
Sbjct: 748 EHNGVLHGYILRYRLAGLPGEYQYKNIT----SAEINYCLVTDLIIWTQYEIQVASYNGA 803

Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
           G G  S  V +YT +G P  PPQ+     + S TI+  W  PP    NG+ +GYK++  P
Sbjct: 804 GLGAFSRPVTEYTLQGVPTAPPQNVQVEAVNSTTIQFLWSPPPQQFINGINQGYKLLAWP 863

Query: 396 SD 397
            D
Sbjct: 864 VD 865

Synaptic adhesion molecule that promotes lamina-specific connectivity in the retina.

Gallus gallus (taxid: 9031)

>sp|Q7Z5N4|SDK1_HUMAN Protein sidekick-1 OS=Homo sapiens GN=SDK1 PE=1 SV=3

 Score =  107 bits (268), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 162/361 (44%), Gaps = 40/361 (11%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGI--LWNMNNKRLDPKSDNRYTIREEILP 108
           PPE  + ++  T+       L C A  +  + +  +W  +N  L P S +R  + ++   
Sbjct: 579 PPEDHVVIKGTTA------TLHCGATHDPRVSLRYVWKKDNVALTPSSTSRIVVEKD--- 629

Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMT-YEASGLKKKQNYIFYVTASTNIGE 167
                 L I +T  GD   ++CEI S+  +  +M   E   L      +     S++   
Sbjct: 630 ----GSLLISQTWSGDIGDYSCEIVSEGGNDSRMARLEVIELPHSPQNLLVSPNSSH--- 682

Query: 168 GQPSKNVTLS------PSNRVPARIASFNDNFT--ATYTEDI--KLPCLTVGVPAPEIIW 217
              S  V LS       ++ +   I   ++N +    +  ++  ++  +TV    P    
Sbjct: 683 ---SHAVVLSWVRPFDGNSPILYYIVELSENNSPWKVHLSNVGPEMTGVTVSGLTPA--- 736

Query: 218 KTYHIRIVAENEIGSSEPS-DTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
           +TY  R+ A NE+G  + S +T  ++  EE PS PP +I        ++ V W PP    
Sbjct: 737 RTYQFRVCAVNEVGRGQYSAETSRLMLPEEPPSAPPKNIVASGRTNQSIMVQWQPPPETE 796

Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
            NGV++GY + Y+      P  ++  + +  E   ++  ++ L  +TQY + V A N  G
Sbjct: 797 HNGVLRGYILRYRLAGL--PGEYQQRNITSPE--VNYCLVTDLIIWTQYEIQVAAYNGAG 852

Query: 337 PGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPS 396
            G  S  V +YT +G P  PPQ+     + S TI+  W  PP    NG+ +GYK++  P+
Sbjct: 853 LGVFSRAVTEYTLQGVPTAPPQNVQTEAVNSTTIQFLWNPPPQQFINGINQGYKLLAWPA 912

Query: 397 D 397
           D
Sbjct: 913 D 913

Cell adhesion protein that guides axonal terminals to specific synapses in developing neurons. Dysregulation of this protein may play an important role in podocyte dysfunction in HIV-associated nephropathy.

Homo sapiens (taxid: 9606)

>sp|Q3UH53|SDK1_MOUSE Protein sidekick-1 OS=Mus musculus GN=Sdk1 PE=2 SV=1

 Score =  101 bits (251), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 162/362 (44%), Gaps = 42/362 (11%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGI--LWNMNNKRLDPKSDNRYTIREEILP 108
           PPE  + ++  T+       L C A  +    +  +W  +N  +   S +R  + ++   
Sbjct: 561 PPEDRVVIKGTTA------TLCCGATHDPRTSLRYVWKKDNVVITASSSSRIVVEKD--- 611

Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKIS-SQQMTYEASGLKKK-QNYIFYVTASTNIG 166
                 L I +T  GD   +TCEI S+  S S+    E   L    QN +  ++ +    
Sbjct: 612 ----GSLVISQTWSGDIGDYTCEIISEGGSDSRTARLEVIELPHPPQNLLASLSPAR--- 664

Query: 167 EGQPSKNVTLS------PSNRVPARIASFNDNFT--ATYTEDI--KLPCLTVGVPAPEII 216
               S +VTLS       ++ V   I   ++N +    +  ++  ++  +TV    P   
Sbjct: 665 ----SHSVTLSWVRPFDGNSPVLYYIVQVSENNSPWKVHLSNVGPEMTGVTVSGLTPA-- 718

Query: 217 WKTYHIRIVAENEIGSSEPS-DTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
            +TY  R+ A N++G  + S +T  ++  EE PS PP +I        ++ V W PP   
Sbjct: 719 -RTYQFRVCAVNQVGKGQYSTETSRLMLPEEPPSAPPKNIVASGRTNQSIMVQWQPPPET 777

Query: 276 HWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKL 335
             NGV++GY + Y+      P   +  + S  E   ++  ++ L  +TQY + V A N  
Sbjct: 778 EHNGVLRGYILRYRLAGL--PGEHQQRNISSPE--VNYCLVTDLIIWTQYEIQVAAYNGA 833

Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
           G G  S  V +YT +G P  PPQ+     + S T+   W  PP    NG+ +GYK++  P
Sbjct: 834 GLGVFSRAVTEYTLQGVPTAPPQNVQAEAVNSTTVHFLWNPPPQQFINGINQGYKLLAWP 893

Query: 396 SD 397
           +D
Sbjct: 894 AD 895

Cell adhesion protein that guides axonal terminals to specific synapses in developing neurons.

Mus musculus (taxid: 10090)

>sp|A2A8L5|PTPRF_MOUSE Receptor-type tyrosine-protein phosphatase F OS=Mus musculus GN=Ptprf PE=1 SV=1

 Score = 97.4 bits (241), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 112/273 (41%), Gaps = 42/273 (15%)

Query: 155 YIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPE 214
           Y   V A T +G+G PS  + +     VPA+ A F  N  A     I+L  L   +P  E
Sbjct: 484 YSLRVLAFTAVGDGPPSPTIQVKTQQGVPAQPADFQAN--AESDTRIQLSWL---LPPQE 538

Query: 215 IIWK----------------------------------TYHIRIVAENEIGSSEPSDTVT 240
            I K                                   YH ++ A +++G    + TV 
Sbjct: 539 RIVKYELVYWAAEDEGQQHKVTFDPTSSYTLEDLKPDTLYHFQLAARSDLGVGVFTPTVE 598

Query: 241 ILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFE 300
             TA+  PS PP  +   +T   T++VSW PP  D  NG+I  Y V Y+    +      
Sbjct: 599 ARTAQSTPSAPPQKVTCVSTGSTTVRVSWVPPPADSRNGIITQYSVAYEAVDGEDRKRHV 658

Query: 301 TVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDN 360
               S+E        L  L+ +T+Y V V+A   +GPGP S  V   T E  P  PP+  
Sbjct: 659 VDGISREHSS---WDLLGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKV 715

Query: 361 TCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
               L S  + VSW  P     +G I+GY+V Y
Sbjct: 716 EVEPLNSTAVHVSWKLPVPNKQHGQIRGYQVTY 748

The first PTPase domain has enzymatic activity, while the second one seems to affect the substrate specificity of the first one.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	543
195382125	2232	dscam [Drosophila virilis] gi|194144578|	0.913	0.222	0.458	1e-116
195474348	2283	dscam [Drosophila yakuba] gi|194175554|g	0.913	0.217	0.455	1e-116
386767221	2019	down syndrome cell adhesion molecule, is	0.913	0.245	0.455	1e-116
45552493	2022	down syndrome cell adhesion molecule, is	0.913	0.245	0.455	1e-116
116007666	2016	down syndrome cell adhesion molecule, is	0.913	0.246	0.455	1e-116
28573968	2019	down syndrome cell adhesion molecule, is	0.913	0.245	0.455	1e-116
116007610	2016	down syndrome cell adhesion molecule, is	0.913	0.246	0.455	1e-116
116007652	2017	down syndrome cell adhesion molecule, is	0.913	0.245	0.455	1e-115
198456023	6743	dscam [Drosophila pseudoobscura pseudoob	0.913	0.073	0.456	1e-115
8072217	2016	Dscam [Drosophila melanogaster]	0.913	0.246	0.455	1e-115

>gi|195382125|ref|XP_002049781.1| dscam [Drosophila virilis] gi|194144578|gb|EDW60974.1| dscam [Drosophila virilis]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 261/569 (45%), Positives = 325/569 (57%), Gaps = 73/569 (12%)

Query: 33   ELLNPSFNGFPPLLLSS--APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNK 90
            E +N   +G   +++ S  APPEF  KLRNQT+RRGEP+VLQCEAKGEKPIGILWNMNN 
Sbjct: 1006 EAINGIGSGLSAVIMVSVQAPPEFTEKLRNQTARRGEPAVLQCEAKGEKPIGILWNMNNM 1065

Query: 91   RLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC----EIKSQKISSQQMTYEA 146
            RLDPK+DNRYTIREEIL  GV+S LSIKRTER DSALFTC       S   S   +  E 
Sbjct: 1066 RLDPKNDNRYTIREEILSAGVMSSLSIKRTERSDSALFTCVATNAFGSDDASINMIVQEV 1125

Query: 147  SGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTE--DIKLP 204
              +      +     S  +   QP      SP NR    I  F  +  A++ E   + +P
Sbjct: 1126 PEMPYALKVLDKSGRSVQLSWAQPYDGN--SPLNRY---IIEFKRS-RASWDEIDRVMVP 1179

Query: 205  CLTVGVPAPEII-WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQN 263
              T      ++    TY+IRIVAENEIGSS+ S+ VTI+TAEEAPSG P +IKV+  +Q 
Sbjct: 1180 GHTTEAQVQKLSPATTYNIRIVAENEIGSSQSSEAVTIITAEEAPSGKPQNIKVDPVNQT 1239

Query: 264  TLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYT 323
            TL+V W PP R  WNG I GYYVGYK ++T+  ++FET++F  EEGKEH L L++L+ YT
Sbjct: 1240 TLRVMWKPPPRSDWNGEILGYYVGYKLSNTNSSYIFETINFITEEGKEHSLELNNLRVYT 1299

Query: 324  QYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITAN 383
            QYSVV+QA NK+G GP+S+E KQ+TAEGTP QPP D  CTTLTSQTIRVSWVSPPL +AN
Sbjct: 1300 QYSVVIQAFNKIGAGPLSDEEKQFTAEGTPSQPPSDTACTTLTSQTIRVSWVSPPLESAN 1359

Query: 384  GVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGH 443
            GVIK YKVVY PS+ WY + K        +  V       +G+ K          T  G 
Sbjct: 1360 GVIKTYKVVYAPSEEWYDETKRHYKKTASSDTV------LHGLKKYTNYTMQVLATTAGG 1413

Query: 444  PG--SFRNHCTWDPRGRNMYEELKS--QGRGYLVPRGGPPPCPG---SDETLYSRHRGES 496
             G  S   HC  +P       ++K+   G   ++    PP  P    +  T+YS+  G  
Sbjct: 1414 DGVRSVPIHCQTEPDVPEAPTDVKALVMGNAAILVSWRPPAQPNGIITQYTVYSKAEGAE 1473

Query: 497  DKCKNDRV---------------------------------------------PARIASF 511
             + K  +V                                             PA+IASF
Sbjct: 1474 TETKTQKVPHYQMSFEATELEKNKPYEFWVTASTTIGEGQQSKSIVAMPSDQVPAKIASF 1533

Query: 512  NDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
            +D FTAT+ ED K+PCL VG P PEI WK
Sbjct: 1534 DDTFTATFKEDAKMPCLAVGAPQPEITWK 1562

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195474348|ref|XP_002089453.1| dscam [Drosophila yakuba] gi|194175554|gb|EDW89165.1| dscam [Drosophila yakuba]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 259/569 (45%), Positives = 325/569 (57%), Gaps = 73/569 (12%)

Query: 33   ELLNPSFNGFPPLLLSS--APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNK 90
            E +N   +G   +++ S  APPEF  KLRNQT+RRGEP+VLQCEAKGEKPIGILWNMNN 
Sbjct: 1058 EAINGIGSGLSAVIMISVQAPPEFTEKLRNQTARRGEPAVLQCEAKGEKPIGILWNMNNM 1117

Query: 91   RLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC----EIKSQKISSQQMTYEA 146
            RLDPK+DNRYTIREEIL  GV+S LSIKRTER DSALFTC       S   S   +  E 
Sbjct: 1118 RLDPKNDNRYTIREEILSTGVMSSLSIKRTERSDSALFTCVATNAFGSDDASINMIVQEV 1177

Query: 147  SGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTE--DIKLP 204
              +      +     S  +   QP      SP +R    I  F  +  A+++E   + +P
Sbjct: 1178 PEMPYALKVLDKSGRSVQLSWAQPYDGN--SPLDRY---IIEFKRS-RASWSEIDRVIVP 1231

Query: 205  CLTVGVPAPEII-WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQN 263
              T      ++    TY+IRIVAEN IG+S+ S+ VTI+TAEEAPSG P +IKVE  +Q 
Sbjct: 1232 GHTTEAQVQKLSPATTYNIRIVAENAIGTSQSSEAVTIITAEEAPSGKPQNIKVEPVNQT 1291

Query: 264  TLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYT 323
            T++V+W PP R  WNG I GYYVGYK ++T+  ++FET++F  EEGKEH+L L +L+ YT
Sbjct: 1292 TMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFETINFITEEGKEHNLELQNLRVYT 1351

Query: 324  QYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITAN 383
            QYSVV+QA NK+G GP+SEE KQ+TAEGTP QPP D  CTTLTSQTIRV WVSPPL +AN
Sbjct: 1352 QYSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQPPSDTACTTLTSQTIRVGWVSPPLESAN 1411

Query: 384  GVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGH 443
            GVIK YKVVY PSD WY + K        +  V       +G+ K          T  G 
Sbjct: 1412 GVIKTYKVVYAPSDEWYDETKRHYKKTASSDTV------LHGLKKYTNYTMQVLATTAGG 1465

Query: 444  PG--SFRNHCTWDPRGRNMYEELKS--QGRGYLVPRGGPPPCPG---SDETLYSRHRGES 496
             G  S   HC  +P       ++K+   G   ++    PP  P    +  T+YS+  G  
Sbjct: 1466 DGVRSVPIHCQTEPDVPEAPTDVKALVMGNAAILVSWRPPAQPNGIITQYTVYSKAEGAE 1525

Query: 497  DKCKNDRV---------------------------------------------PARIASF 511
             + K  +V                                             PA+IASF
Sbjct: 1526 TETKTQKVPHYQMSFEATELEKNKPYEFWVTASTTIGEGQQSKSIVAMPSDQVPAKIASF 1585

Query: 512  NDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
            +D FTAT+ ED K+PCL VG P PEI WK
Sbjct: 1586 DDTFTATFKEDAKMPCLAVGAPQPEITWK 1614

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386767221|ref|NP_001246174.1| down syndrome cell adhesion molecule, isoform BO [Drosophila melanogaster] gi|383302302|gb|AFH07929.1| down syndrome cell adhesion molecule, isoform BO [Drosophila melanogaster]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 259/569 (45%), Positives = 325/569 (57%), Gaps = 73/569 (12%)

Query: 33   ELLNPSFNGFPPLLLSS--APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNK 90
            E +N   +G   +++ S  APPEF  KLRNQT+RRGEP+VLQCEAKGEKPIGILWNMNN 
Sbjct: 794  EAINGIGSGLSAVIMISVQAPPEFTEKLRNQTARRGEPAVLQCEAKGEKPIGILWNMNNM 853

Query: 91   RLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC----EIKSQKISSQQMTYEA 146
            RLDPK+DNRYTIREEIL  GV+S LSIKRTER DSALFTC       S   S   +  E 
Sbjct: 854  RLDPKNDNRYTIREEILSTGVMSSLSIKRTERSDSALFTCVATNAFGSDDASINMIVQEV 913

Query: 147  SGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTE--DIKLP 204
              +      +     S  +   QP      SP +R    I  F  +  A+++E   + +P
Sbjct: 914  PEMPYALKVLDKSGRSVQLSWAQPYDGN--SPLDRY---IIEFKRS-RASWSEIDRVIVP 967

Query: 205  CLTVGVPAPEII-WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQN 263
              T      ++    TY+IRIVAEN IG+S+ S+ VTI+TAEEAPSG P +IKVE  +Q 
Sbjct: 968  GHTTEAQVQKLSPATTYNIRIVAENAIGTSQSSEAVTIITAEEAPSGKPQNIKVEPVNQT 1027

Query: 264  TLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYT 323
            T++V+W PP R  WNG I GYYVGYK ++T+  ++FET++F  EEGKEH+L L +L+ YT
Sbjct: 1028 TMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFETINFITEEGKEHNLELQNLRVYT 1087

Query: 324  QYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITAN 383
            QYSVV+QA NK+G GP+SEE KQ+TAEGTP QPP D  CTTLTSQTIRV WVSPPL +AN
Sbjct: 1088 QYSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQPPSDTACTTLTSQTIRVGWVSPPLESAN 1147

Query: 384  GVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGH 443
            GVIK YKVVY PSD WY + K        +  V       +G+ K          T  G 
Sbjct: 1148 GVIKTYKVVYAPSDEWYDETKRHYKKTASSDTV------LHGLKKYTNYTMQVLATTAGG 1201

Query: 444  PG--SFRNHCTWDPRGRNMYEELKS--QGRGYLVPRGGPPPCPG---SDETLYSRHRGES 496
             G  S   HC  +P       ++K+   G   ++    PP  P    +  T+YS+  G  
Sbjct: 1202 DGVRSVPIHCQTEPDVPEAPTDVKALVMGNAAILVSWRPPAQPNGIITQYTVYSKAEGAE 1261

Query: 497  DKCKNDRV---------------------------------------------PARIASF 511
             + K  +V                                             PA+IASF
Sbjct: 1262 TETKTQKVPHYQMSFEATELEKNKPYEFWVTASTTIGEGQQSKSIVAMPSDQVPAKIASF 1321

Query: 512  NDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
            +D FTAT+ ED K+PCL VG P PEI WK
Sbjct: 1322 DDTFTATFKEDAKMPCLAVGAPQPEITWK 1350

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45552493|ref|NP_995769.1| down syndrome cell adhesion molecule, isoform E [Drosophila melanogaster] gi|45445657|gb|AAS64901.1| down syndrome cell adhesion molecule, isoform E [Drosophila melanogaster]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 259/569 (45%), Positives = 325/569 (57%), Gaps = 73/569 (12%)

Query: 33   ELLNPSFNGFPPLLLSS--APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNK 90
            E +N   +G   +++ S  APPEF  KLRNQT+RRGEP+VLQCEAKGEKPIGILWNMNN 
Sbjct: 797  EAINGIGSGLSAVIMISVQAPPEFTEKLRNQTARRGEPAVLQCEAKGEKPIGILWNMNNM 856

Query: 91   RLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC----EIKSQKISSQQMTYEA 146
            RLDPK+DNRYTIREEIL  GV+S LSIKRTER DSALFTC       S   S   +  E 
Sbjct: 857  RLDPKNDNRYTIREEILSTGVMSSLSIKRTERSDSALFTCVATNAFGSDDASINMIVQEV 916

Query: 147  SGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTE--DIKLP 204
              +      +     S  +   QP      SP +R    I  F  +  A+++E   + +P
Sbjct: 917  PEMPYALKVLDKSGRSVQLSWAQPYDGN--SPLDRY---IIEFKRS-RASWSEIDRVIVP 970

Query: 205  CLTVGVPAPEII-WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQN 263
              T      ++    TY+IRIVAEN IG+S+ S+ VTI+TAEEAPSG P +IKVE  +Q 
Sbjct: 971  GHTTEAQVQKLSPATTYNIRIVAENAIGTSQSSEAVTIITAEEAPSGKPQNIKVEPVNQT 1030

Query: 264  TLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYT 323
            T++V+W PP R  WNG I GYYVGYK ++T+  ++FET++F  EEGKEH+L L +L+ YT
Sbjct: 1031 TMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFETINFITEEGKEHNLELQNLRVYT 1090

Query: 324  QYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITAN 383
            QYSVV+QA NK+G GP+SEE KQ+TAEGTP QPP D  CTTLTSQTIRV WVSPPL +AN
Sbjct: 1091 QYSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQPPSDTACTTLTSQTIRVGWVSPPLESAN 1150

Query: 384  GVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGH 443
            GVIK YKVVY PSD WY + K        +  V       +G+ K          T  G 
Sbjct: 1151 GVIKTYKVVYAPSDEWYDETKRHYKKTASSDTV------LHGLKKYTNYTMQVLATTAGG 1204

Query: 444  PG--SFRNHCTWDPRGRNMYEELKS--QGRGYLVPRGGPPPCPG---SDETLYSRHRGES 496
             G  S   HC  +P       ++K+   G   ++    PP  P    +  T+YS+  G  
Sbjct: 1205 DGVRSVPIHCQTEPDVPEAPTDVKALVMGNAAILVSWRPPAQPNGIITQYTVYSKAEGAE 1264

Query: 497  DKCKNDRV---------------------------------------------PARIASF 511
             + K  +V                                             PA+IASF
Sbjct: 1265 TETKTQKVPHYQMSFEATELEKNKPYEFWVTASTTIGEGQQSKSIVAMPSDQVPAKIASF 1324

Query: 512  NDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
            +D FTAT+ ED K+PCL VG P PEI WK
Sbjct: 1325 DDTFTATFKEDAKMPCLAVGAPQPEITWK 1353

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007666|ref|NP_001036529.1| down syndrome cell adhesion molecule, isoform AE [Drosophila melanogaster] gi|113194634|gb|ABI31080.1| down syndrome cell adhesion molecule, isoform AE [Drosophila melanogaster]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 259/569 (45%), Positives = 325/569 (57%), Gaps = 73/569 (12%)

Query: 33   ELLNPSFNGFPPLLLSS--APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNK 90
            E +N   +G   +++ S  APPEF  KLRNQT+RRGEP+VLQCEAKGEKPIGILWNMNN 
Sbjct: 791  EAINGIGSGLSAVIMISVQAPPEFTEKLRNQTARRGEPAVLQCEAKGEKPIGILWNMNNM 850

Query: 91   RLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC----EIKSQKISSQQMTYEA 146
            RLDPK+DNRYTIREEIL  GV+S LSIKRTER DSALFTC       S   S   +  E 
Sbjct: 851  RLDPKNDNRYTIREEILSTGVMSSLSIKRTERSDSALFTCVATNAFGSDDASINMIVQEV 910

Query: 147  SGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTE--DIKLP 204
              +      +     S  +   QP      SP +R    I  F  +  A+++E   + +P
Sbjct: 911  PEMPYALKVLDKSGRSVQLSWAQPYDGN--SPLDRY---IIEFKRS-RASWSEIDRVIVP 964

Query: 205  CLTVGVPAPEII-WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQN 263
              T      ++    TY+IRIVAEN IG+S+ S+ VTI+TAEEAPSG P +IKVE  +Q 
Sbjct: 965  GHTTEAQVQKLSPATTYNIRIVAENAIGTSQSSEAVTIITAEEAPSGKPQNIKVEPVNQT 1024

Query: 264  TLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYT 323
            T++V+W PP R  WNG I GYYVGYK ++T+  ++FET++F  EEGKEH+L L +L+ YT
Sbjct: 1025 TMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFETINFITEEGKEHNLELQNLRVYT 1084

Query: 324  QYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITAN 383
            QYSVV+QA NK+G GP+SEE KQ+TAEGTP QPP D  CTTLTSQTIRV WVSPPL +AN
Sbjct: 1085 QYSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQPPSDTACTTLTSQTIRVGWVSPPLESAN 1144

Query: 384  GVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGH 443
            GVIK YKVVY PSD WY + K        +  V       +G+ K          T  G 
Sbjct: 1145 GVIKTYKVVYAPSDEWYDETKRHYKKTASSDTV------LHGLKKYTNYTMQVLATTAGG 1198

Query: 444  PG--SFRNHCTWDPRGRNMYEELKS--QGRGYLVPRGGPPPCPG---SDETLYSRHRGES 496
             G  S   HC  +P       ++K+   G   ++    PP  P    +  T+YS+  G  
Sbjct: 1199 DGVRSVPIHCQTEPDVPEAPTDVKALVMGNAAILVSWRPPAQPNGIITQYTVYSKAEGAE 1258

Query: 497  DKCKNDRV---------------------------------------------PARIASF 511
             + K  +V                                             PA+IASF
Sbjct: 1259 TETKTQKVPHYQMSFEATELEKNKPYEFWVTASTTIGEGQQSKSIVAMPSDQVPAKIASF 1318

Query: 512  NDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
            +D FTAT+ ED K+PCL VG P PEI WK
Sbjct: 1319 DDTFTATFKEDAKMPCLAVGAPQPEITWK 1347

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28573968|ref|NP_523649.5| down syndrome cell adhesion molecule, isoform D [Drosophila melanogaster] gi|21627760|gb|AAM68883.1| down syndrome cell adhesion molecule, isoform D [Drosophila melanogaster]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 259/569 (45%), Positives = 325/569 (57%), Gaps = 73/569 (12%)

Query: 33   ELLNPSFNGFPPLLLSS--APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNK 90
            E +N   +G   +++ S  APPEF  KLRNQT+RRGEP+VLQCEAKGEKPIGILWNMNN 
Sbjct: 794  EAINGIGSGLSAVIMISVQAPPEFTEKLRNQTARRGEPAVLQCEAKGEKPIGILWNMNNM 853

Query: 91   RLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC----EIKSQKISSQQMTYEA 146
            RLDPK+DNRYTIREEIL  GV+S LSIKRTER DSALFTC       S   S   +  E 
Sbjct: 854  RLDPKNDNRYTIREEILSTGVMSSLSIKRTERSDSALFTCVATNAFGSDDASINMIVQEV 913

Query: 147  SGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTE--DIKLP 204
              +      +     S  +   QP      SP +R    I  F  +  A+++E   + +P
Sbjct: 914  PEMPYALKVLDKSGRSVQLSWAQPYDGN--SPLDRY---IIEFKRS-RASWSEIDRVIVP 967

Query: 205  CLTVGVPAPEII-WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQN 263
              T      ++    TY+IRIVAEN IG+S+ S+ VTI+TAEEAPSG P +IKVE  +Q 
Sbjct: 968  GHTTEAQVQKLSPATTYNIRIVAENAIGTSQSSEAVTIITAEEAPSGKPQNIKVEPVNQT 1027

Query: 264  TLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYT 323
            T++V+W PP R  WNG I GYYVGYK ++T+  ++FET++F  EEGKEH+L L +L+ YT
Sbjct: 1028 TMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFETINFITEEGKEHNLELQNLRVYT 1087

Query: 324  QYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITAN 383
            QYSVV+QA NK+G GP+SEE KQ+TAEGTP QPP D  CTTLTSQTIRV WVSPPL +AN
Sbjct: 1088 QYSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQPPSDTACTTLTSQTIRVGWVSPPLESAN 1147

Query: 384  GVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGH 443
            GVIK YKVVY PSD WY + K        +  V       +G+ K          T  G 
Sbjct: 1148 GVIKTYKVVYAPSDEWYDETKRHYKKTASSDTV------LHGLKKYTNYTMQVLATTAGG 1201

Query: 444  PG--SFRNHCTWDPRGRNMYEELKS--QGRGYLVPRGGPPPCPG---SDETLYSRHRGES 496
             G  S   HC  +P       ++K+   G   ++    PP  P    +  T+YS+  G  
Sbjct: 1202 DGVRSVPIHCQTEPDVPEAPTDVKALVMGNAAILVSWRPPAQPNGIITQYTVYSKAEGAE 1261

Query: 497  DKCKNDRV---------------------------------------------PARIASF 511
             + K  +V                                             PA+IASF
Sbjct: 1262 TETKTQKVPHYQMSFEATELEKNKPYEFWVTASTTIGEGQQSKSIVAMPSDQVPAKIASF 1321

Query: 512  NDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
            +D FTAT+ ED K+PCL VG P PEI WK
Sbjct: 1322 DDTFTATFKEDAKMPCLAVGAPQPEITWK 1350

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007610|ref|NP_001036501.1| down syndrome cell adhesion molecule, isoform AA [Drosophila melanogaster] gi|113194606|gb|ABI31052.1| down syndrome cell adhesion molecule, isoform AA [Drosophila melanogaster]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 259/569 (45%), Positives = 325/569 (57%), Gaps = 73/569 (12%)

Query: 33   ELLNPSFNGFPPLLLSS--APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNK 90
            E +N   +G   +++ S  APPEF  KLRNQT+RRGEP+VLQCEAKGEKPIGILWNMNN 
Sbjct: 791  EAINGIGSGLSAVIMISVQAPPEFTEKLRNQTARRGEPAVLQCEAKGEKPIGILWNMNNM 850

Query: 91   RLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC----EIKSQKISSQQMTYEA 146
            RLDPK+DNRYTIREEIL  GV+S LSIKRTER DSALFTC       S   S   +  E 
Sbjct: 851  RLDPKNDNRYTIREEILSTGVMSSLSIKRTERSDSALFTCVATNAFGSDDASINMIVQEV 910

Query: 147  SGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTE--DIKLP 204
              +      +     S  +   QP      SP +R    I  F  +  A+++E   + +P
Sbjct: 911  PEMPYALKVLDKSGRSVQLSWAQPYDGN--SPLDRY---IIEFKRS-RASWSEIDRVIVP 964

Query: 205  CLTVGVPAPEII-WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQN 263
              T      ++    TY+IRIVAEN IG+S+ S+ VTI+TAEEAPSG P +IKVE  +Q 
Sbjct: 965  GHTTEAQVQKLSPATTYNIRIVAENAIGTSQSSEAVTIITAEEAPSGKPQNIKVEPVNQT 1024

Query: 264  TLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYT 323
            T++V+W PP R  WNG I GYYVGYK ++T+  ++FET++F  EEGKEH+L L +L+ YT
Sbjct: 1025 TMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFETINFITEEGKEHNLELQNLRVYT 1084

Query: 324  QYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITAN 383
            QYSVV+QA NK+G GP+SEE KQ+TAEGTP QPP D  CTTLTSQTIRV WVSPPL +AN
Sbjct: 1085 QYSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQPPSDTACTTLTSQTIRVGWVSPPLESAN 1144

Query: 384  GVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGH 443
            GVIK YKVVY PSD WY + K        +  V       +G+ K          T  G 
Sbjct: 1145 GVIKTYKVVYAPSDEWYDETKRHYKKTASSDTV------LHGLKKYTNYTMQVLATTAGG 1198

Query: 444  PG--SFRNHCTWDPRGRNMYEELKS--QGRGYLVPRGGPPPCPG---SDETLYSRHRGES 496
             G  S   HC  +P       ++K+   G   ++    PP  P    +  T+YS+  G  
Sbjct: 1199 DGVRSVPIHCQTEPDVPEAPTDVKALVMGNAAILVSWRPPAQPNGIITQYTVYSKAEGAE 1258

Query: 497  DKCKNDRV---------------------------------------------PARIASF 511
             + K  +V                                             PA+IASF
Sbjct: 1259 TETKTQKVPHYQMSFEATELEKNKPYEFWVTASTTIGEGQQSKSIVAMPSDQVPAKIASF 1318

Query: 512  NDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
            +D FTAT+ ED K+PCL VG P PEI WK
Sbjct: 1319 DDTFTATFKEDAKMPCLAVGAPQPEITWK 1347

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007652|ref|NP_001036522.1| down syndrome cell adhesion molecule, isoform AM [Drosophila melanogaster] gi|113194627|gb|ABI31073.1| down syndrome cell adhesion molecule, isoform AM [Drosophila melanogaster]

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 259/569 (45%), Positives = 325/569 (57%), Gaps = 73/569 (12%)

Query: 33   ELLNPSFNGFPPLLLSS--APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNK 90
            E +N   +G   +++ S  APPEF  KLRNQT+RRGEP+VLQCEAKGEKPIGILWNMNN 
Sbjct: 792  EAINGIGSGLSAVIMISVQAPPEFTEKLRNQTARRGEPAVLQCEAKGEKPIGILWNMNNM 851

Query: 91   RLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC----EIKSQKISSQQMTYEA 146
            RLDPK+DNRYTIREEIL  GV+S LSIKRTER DSALFTC       S   S   +  E 
Sbjct: 852  RLDPKNDNRYTIREEILSTGVMSSLSIKRTERSDSALFTCVATNAFGSDDASINMIVQEV 911

Query: 147  SGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTE--DIKLP 204
              +      +     S  +   QP      SP +R    I  F  +  A+++E   + +P
Sbjct: 912  PEMPYALKVLDKSGRSVQLSWAQPYDGN--SPLDRY---IIEFKRS-RASWSEIDRVIVP 965

Query: 205  CLTVGVPAPEII-WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQN 263
              T      ++    TY+IRIVAEN IG+S+ S+ VTI+TAEEAPSG P +IKVE  +Q 
Sbjct: 966  GHTTEAQVQKLSPATTYNIRIVAENAIGTSQSSEAVTIITAEEAPSGKPQNIKVEPVNQT 1025

Query: 264  TLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYT 323
            T++V+W PP R  WNG I GYYVGYK ++T+  ++FET++F  EEGKEH+L L +L+ YT
Sbjct: 1026 TMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFETINFITEEGKEHNLELQNLRVYT 1085

Query: 324  QYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITAN 383
            QYSVV+QA NK+G GP+SEE KQ+TAEGTP QPP D  CTTLTSQTIRV WVSPPL +AN
Sbjct: 1086 QYSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQPPSDTACTTLTSQTIRVGWVSPPLESAN 1145

Query: 384  GVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGH 443
            GVIK YKVVY PSD WY + K        +  V       +G+ K          T  G 
Sbjct: 1146 GVIKTYKVVYAPSDEWYDETKRHYKKTASSDTV------LHGLKKYTNYTMQVLATTAGG 1199

Query: 444  PG--SFRNHCTWDPRGRNMYEELKS--QGRGYLVPRGGPPPCPG---SDETLYSRHRGES 496
             G  S   HC  +P       ++K+   G   ++    PP  P    +  T+YS+  G  
Sbjct: 1200 DGVRSVPIHCQTEPDVPEAPTDVKALVMGNAAILVSWRPPAQPNGIITQYTVYSKAEGAE 1259

Query: 497  DKCKNDRV---------------------------------------------PARIASF 511
             + K  +V                                             PA+IASF
Sbjct: 1260 TETKTQKVPHYQMSFEATELEKNKPYEFWVTASTTIGEGQQSKSIVAMPSDQVPAKIASF 1319

Query: 512  NDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
            +D FTAT+ ED K+PCL VG P PEI WK
Sbjct: 1320 DDTFTATFKEDAKMPCLAVGAPQPEITWK 1348

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198456023|ref|XP_001360206.2| dscam [Drosophila pseudoobscura pseudoobscura] gi|198135489|gb|EAL24780.2| dscam [Drosophila pseudoobscura pseudoobscura]

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 260/569 (45%), Positives = 325/569 (57%), Gaps = 73/569 (12%)

Query: 33   ELLNPSFNGFPPLLLSS--APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNK 90
            E +N   +G   +++ S  APPEF  KLRNQT+RRGEP+VLQCEAKGEKPIGILWNMNN 
Sbjct: 5446 EAINGIGSGLSAVIMISVQAPPEFTEKLRNQTARRGEPAVLQCEAKGEKPIGILWNMNNM 5505

Query: 91   RLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC----EIKSQKISSQQMTYEA 146
            RLDPK+DNRYTIREEIL  GV+S LSIKRTER DSALFTC       S   S   +  E 
Sbjct: 5506 RLDPKNDNRYTIREEILSTGVMSSLSIKRTERSDSALFTCVATNAFGSDDASINMIVQEV 5565

Query: 147  SGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTE--DIKLP 204
              +      +     S  +   QP      SP NR    I  F  +  A+++E   + +P
Sbjct: 5566 PEMPYALKVLDKSGRSVQLSWAQPYDGN--SPLNRY---IIEFKRS-RASWSEIDRVMVP 5619

Query: 205  CLTVGVPAPEII-WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQN 263
              T      ++    TY+IRIVAEN IG+S+ S+ VTI+TAEEAPSG P +IKVE  +Q 
Sbjct: 5620 GHTTEAQVQKLSPATTYNIRIVAENVIGTSQSSEAVTIITAEEAPSGKPQNIKVEPVNQT 5679

Query: 264  TLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYT 323
            T++V+W PP R  WNG I GYYVGYK ++T+  ++FET++F  EEGKEH L L +L+ YT
Sbjct: 5680 TMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFETINFITEEGKEHILDLQNLRVYT 5739

Query: 324  QYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITAN 383
            QYSVV+QA NK+G GP+SEE KQ+TAEGTP QPP D +CTTLTSQTIRVSWVSPPL +AN
Sbjct: 5740 QYSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQPPSDTSCTTLTSQTIRVSWVSPPLESAN 5799

Query: 384  GVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGH 443
            GVIK YKVVY PSD WY + K        +  V       +G+ K          T  G 
Sbjct: 5800 GVIKTYKVVYAPSDEWYDETKRHYKKTASSDTV------LHGLKKYTNYTMQVLATTAGG 5853

Query: 444  PG--SFRNHCTWDPRGRNMYEELKS--QGRGYLVPRGGPPPCPG---SDETLYSRHRGES 496
             G  S   HC  +P       ++K+   G   ++     P  P    +  T+YS+  G  
Sbjct: 5854 DGVRSAPIHCQTEPDVPEAPTDVKALVMGNAAILVSWRQPAQPNGIITQYTVYSKAEGAE 5913

Query: 497  DKCKNDRVP---------------------------------------------ARIASF 511
             + K  +VP                                             A+IASF
Sbjct: 5914 TETKTQKVPHYQMSFEASELEKNKPYEFWVTASTTIGEGQQSKSIVAMPSDQVPAKIASF 5973

Query: 512  NDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
            +D FTAT+ ED K+PCL VG P PEI WK
Sbjct: 5974 DDTFTATFKEDAKMPCLAVGAPQPEITWK 6002

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|8072217|gb|AAF71926.1|AF260530_1 Dscam [Drosophila melanogaster]

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 259/569 (45%), Positives = 325/569 (57%), Gaps = 73/569 (12%)

Query: 33   ELLNPSFNGFPPLLLSS--APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNK 90
            E +N   +G   +++ S  APPEF  KLRNQT+RRGEP+VLQCEAKGEKPIGILWNMNN 
Sbjct: 791  EAINGIGSGLSAVIMISVQAPPEFTEKLRNQTARRGEPAVLQCEAKGEKPIGILWNMNNM 850

Query: 91   RLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC----EIKSQKISSQQMTYEA 146
            RLDPK+DNRYTIREEIL  GV+S LSIKRTER DSALFTC       S   S   +  E 
Sbjct: 851  RLDPKNDNRYTIREEILSTGVMSSLSIKRTERSDSALFTCVATNAFGSDDASINMIVQEV 910

Query: 147  SGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTE--DIKLP 204
              +      +     S  +   QP      SP +R    I  F  +  A+++E   + +P
Sbjct: 911  PEMPYALKVLDKSGRSVQLSWAQPYDGN--SPLDRY---IIEFKRS-RASWSEIDRVIVP 964

Query: 205  CLTVGVPAPEII-WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQN 263
              T      ++    TY+IRIVAEN IG+S+ S+ VTI+TAEEAPSG P +IKVE  +Q 
Sbjct: 965  GHTTEAQVQKLSPATTYNIRIVAENAIGTSQSSEAVTIITAEEAPSGKPQNIKVEPVNQT 1024

Query: 264  TLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYT 323
            T++V+W PP R  WNG I GYYVGYK ++T+  ++FET++F  EEGKEH+L L +L+ YT
Sbjct: 1025 TMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFETINFITEEGKEHNLELQNLRVYT 1084

Query: 324  QYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITAN 383
            QYSVV+QA NK+G GP+SEE KQ+TAEGTP QPP D  CTTLTSQTIRV WVSPPL +AN
Sbjct: 1085 QYSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQPPSDTACTTLTSQTIRVGWVSPPLESAN 1144

Query: 384  GVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGH 443
            GVIK YKVVY PSD WY + K        +  V       +G+ K          T  G 
Sbjct: 1145 GVIKTYKVVYAPSDEWYDETKRHYKKTASSDTV------LHGLKKYTNYTMQVLATTAGG 1198

Query: 444  PG--SFRNHCTWDPRGRNMYEELKS--QGRGYLVPRGGPPPCPG---SDETLYSRHRGES 496
             G  S   HC  +P       ++K+   G   ++    PP  P    +  T+YS+  G  
Sbjct: 1199 DGVRSVPIHCQTEPDVPEAPTDVKALVMGNAAILVSWRPPAQPNGIITQYTVYSKAEGAE 1258

Query: 497  DKCKNDRV---------------------------------------------PARIASF 511
             + K  +V                                             PA+IASF
Sbjct: 1259 TETKTQKVPHYQMSFEATELEKNKPYEFWVTASTTIGEGQQSKSIVAMPSDQVPAKIASF 1318

Query: 512  NDNFTATYTEDIKLPCLTVGVPAPEIIWK 540
            +D FTAT+ ED K+PCL VG P PEI WK
Sbjct: 1319 DDTFTATFKEDAKMPCLAVGAPQPEITWK 1347

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	543
FB|FBgn0033159	2037	Dscam "Down syndrome cell adhe	0.860	0.229	0.480	6.8e-117
FB|FBgn0263219	1918	Dscam4 "Down syndrome cell adh	0.696	0.197	0.322	2.3e-57
MGI|MGI:1196281	2013	Dscam "Down syndrome cell adhe	0.596	0.160	0.311	1.2e-48
RGD|619992	2013	Dscam "Down syndrome cell adhe	0.596	0.160	0.311	1.2e-48
UNIPROTKB|O60469	2012	DSCAM "Down syndrome cell adhe	0.596	0.161	0.308	3.9e-48
MGI|MGI:2150309	2053	Dscaml1 "Down syndrome cell ad	0.318	0.084	0.413	4.2e-47
UNIPROTKB|E1BZF3	1870	E1BZF3 "Uncharacterized protei	0.318	0.092	0.413	8.9e-47
UNIPROTKB|F1MKB9	1859	DSCAM "Uncharacterized protein	0.605	0.176	0.301	1.8e-46
UNIPROTKB|F1N4K6	1886	DSCAML1 "Uncharacterized prote	0.318	0.091	0.413	2.3e-46
UNIPROTKB|Q8TD84	2053	DSCAML1 "Down syndrome cell ad	0.318	0.084	0.413	2.8e-46

FB|FBgn0033159 Dscam "Down syndrome cell adhesion molecule" [Drosophila melanogaster (taxid:7227)]

 Score = 1040 (371.2 bits), Expect = 6.8e-117, Sum P(2) = 6.8e-117
 Identities = 238/495 (48%), Positives = 300/495 (60%)

Query:    33 ELLNPSFNGFPPLLLSS--APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNK 90
             E +N   +G   +++ S  APPEF  KLRNQT+RRGEP+VLQCEAKGEKPIGILWNMNN 
Sbjct:   797 EAINGIGSGLSAVIMISVQAPPEFTEKLRNQTARRGEPAVLQCEAKGEKPIGILWNMNNM 856

Query:    91 RLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC----EIKSQKISSQQMTYEA 146
             RLDPK+DNRYTIREEIL  GV+S LSIKRTER DSALFTC       S   S   +  E 
Sbjct:   857 RLDPKNDNRYTIREEILSTGVMSSLSIKRTERSDSALFTCVATNAFGSDDASINMIVQEV 916

Query:   147 SGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTE-D-IKLP 204
               +      +     S  +   QP      SP +R    I  F  +  A+++E D + +P
Sbjct:   917 PEMPYALKVLDKSGRSVQLSWAQPYDGN--SPLDRY---IIEFKRS-RASWSEIDRVIVP 970

Query:   205 CLTVGVPAPEII-WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQN 263
               T      ++    TY+IRIVAEN IG+S+ S+ VTI+TAEEAPSG P +IKVE  +Q 
Sbjct:   971 GHTTEAQVQKLSPATTYNIRIVAENAIGTSQSSEAVTIITAEEAPSGKPQNIKVEPVNQT 1030

Query:   264 TLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYT 323
             T++V+W PP R  WNG I GYYVGYK ++T+  ++FET++F  EEGKEH+L L +L+ YT
Sbjct:  1031 TMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFETINFITEEGKEHNLELQNLRVYT 1090

Query:   324 QYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITAN 383
             QYSVV+QA NK+G GP+SEE KQ+TAEGTP QPP D  CTTLTSQTIRV WVSPPL +AN
Sbjct:  1091 QYSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQPPSDTACTTLTSQTIRVGWVSPPLESAN 1150

Query:   384 GVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGH 443
             GVIK YKVVY PSD WY + K        +  V       +G+ K          T  G 
Sbjct:  1151 GVIKTYKVVYAPSDEWYDETKRHYKKTASSDTV------LHGLKKYTNYTMQVLATTAGG 1204

Query:   444 PG--SFRNHCTWDPRGRNMYEELKS--QGRGYLVPRGGPPPCPG---SDETLYSRHRGES 496
              G  S   HC  +P       ++K+   G   ++    PP  P    +  T+YS+  G  
Sbjct:  1205 DGVRSVPIHCQTEPDVPEAPTDVKALVMGNAAILVSWRPPAQPNGIITQYTVYSKAEGAE 1264

Query:   497 DKCKNDRVPARIASF 511
              + K  +VP    SF
Sbjct:  1265 TETKTQKVPHYQMSF 1279

GO:0005887 "integral to plasma membrane" evidence=ISM;ISS

GO:0007411 "axon guidance" evidence=IGI;IMP;TAS

GO:0008046 "axon guidance receptor activity" evidence=IMP;NAS

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0051635 "bacterial cell surface binding" evidence=IDA

GO:0048666 "neuron development" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=IMP;IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0021551 "central nervous system morphogenesis" evidence=IMP

GO:0048846 "axon extension involved in axon guidance" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

FB|FBgn0263219 Dscam4 "Down syndrome cell adhesion molecule 4" [Drosophila melanogaster (taxid:7227)]

 Score = 527 (190.6 bits), Expect = 2.3e-57, Sum P(2) = 2.3e-57
 Identities = 129/400 (32%), Positives = 201/400 (50%)

Query:    25 ESSFHFDPELLNPSFNGFPPLLLS--SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIG 82
             ES  HF  E  N   +G   ++    + P  F+ K +  +  +G+   +QC  +G+ PI 
Sbjct:   776 ESQGHFLCEAKNNIGSGVSKVIFLKVNVPAHFQTKTKQISVAKGKQVHVQCNVQGDNPID 835

Query:    83 ILWNMN--NKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKS----QK 136
               W +    + LD   D+RYTIR+++L +G++S+L I  T R D+ ++ C+  +     +
Sbjct:   836 FKWKIQATQQYLDESLDSRYTIRDQVLDDGMVSELGISHTYRQDTGIYICQASNAFGQDE 895

Query:   137 ISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP-SKNVTLSPSNRVPARIASF-NDNFT 194
             +S Q +  E     K        + S  +   QP + N  +   +    +I+ F + +  
Sbjct:   896 MSIQLIVQEVPEQPKNLRINSQQSRSLQLTWSQPFAGNSPIEEYHIYYKQISDFFSPSDI 955

Query:   195 ATYTEDIKLPCLTVGVPAPEII-WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
                 E + +      +   ++   K YHIR+ AEN++G+SE S+ V + T EE PSGPP 
Sbjct:   956 WQNAEHLTIAGAQTVINIQQLRPAKAYHIRMSAENKLGASEFSEVVQVTTLEEVPSGPPL 1015

Query:   254 HIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGY--------KETSTDKPFLFETVDFS 305
              ++ E      + V+W  PERDHWNG++ GYYVGY        KE +  + F F+TV+  
Sbjct:  1016 AVRAEPKSSTEIFVTWDAPERDHWNGILLGYYVGYQMSLTPEDKEVNPTQGFSFKTVEVR 1075

Query:   306 KEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTL 365
                G E    L++L  +TQY V+VQA    G GP S+E+   T E  P  PP+   C  L
Sbjct:  1076 SHFGGE--TVLANLNKFTQYHVIVQAYTSQGSGPPSKEIAVQTMEDVPSSPPESPQCDVL 1133

Query:   366 TSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYG-DPK 404
              S +I ++W  P +   NG IKGYKV Y   D  Y  DP+
Sbjct:  1134 GSTSIYITWSPPDIDGQNGKIKGYKVFYISVDELYETDPE 1173

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

MGI|MGI:1196281 Dscam "Down syndrome cell adhesion molecule" [Mus musculus (taxid:10090)]

 Score = 421 (153.3 bits), Expect = 1.2e-48, Sum P(4) = 1.2e-48
 Identities = 107/344 (31%), Positives = 174/344 (50%)

Query:    60 NQT-SRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIK 118
             N T + +G+   + C A GEKPI + W   ++ ++P+   RY +  + +   V+S L I 
Sbjct:   795 NTTLATQGQRKEMSCTAHGEKPIIVRWEKEDRIINPEMA-RYLVSTKEVGEEVISTLQIL 853

Query:   119 RTERGDSALFTCE-IKS--QKISSQQMTYEASG----LKKKQNYIFYVTASTNIG-EGQP 170
              T R DS  F+C  I S  +     Q+T +       ++ K      +T    +G +G  
Sbjct:   854 PTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPEIEIKDVKARTITLRWTMGFDGN- 912

Query:   171 SKNVTLSPSNRVPARIASFNDNF-TATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENE 229
                   SP         + +D++ +A  T+D+  P L            TY IR+ A+N 
Sbjct:   913 ------SPITGYDIECKNKSDSWDSAQRTKDVS-PQLNSATIIDIHPSSTYSIRMYAKNR 965

Query:   230 IGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYK 289
             IG SEPS+ +TI   E AP GPP  + +E T   +++V+W  P++   NG+I+GY +GY+
Sbjct:   966 IGKSEPSNEITITADEAAPDGPPQEVHLEPTSSQSIRVTWKAPKKHLQNGIIRGYQIGYR 1025

Query:   290 ETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTA 349
             E ST   F F  +        E + TL +L  +TQY +VVQA N+ G GP S+E+   T 
Sbjct:  1026 EYSTGGNFQFNIISIDTTGDSEVY-TLDNLNKFTQYGLVVQACNRAGTGPSSQEIITTTL 1084

Query:   350 EGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
             E  P  PP++      + ++I +SW +      NG+++G++V+Y
Sbjct:  1085 EDVPSYPPENVQAIATSPESISISWSTLSKEALNGILQGFRVIY 1128

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IMP

GO:0007399 "nervous system development" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0030426 "growth cone" evidence=IDA

GO:0042327 "positive regulation of phosphorylation" evidence=ISO

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IDA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IMP

GO:0070593 "dendrite self-avoidance" evidence=IMP

RGD|619992 Dscam "Down syndrome cell adhesion molecule" [Rattus norvegicus (taxid:10116)]

 Score = 421 (153.3 bits), Expect = 1.2e-48, Sum P(4) = 1.2e-48
 Identities = 107/344 (31%), Positives = 174/344 (50%)

Query:    60 NQT-SRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIK 118
             N T + +G+   + C A GEKPI + W   ++ ++P+   RY +  + +   V+S L I 
Sbjct:   795 NTTLATQGQRKEMSCTAHGEKPIIVRWEKEDRIINPEMA-RYLVSTKEVGEEVISTLQIL 853

Query:   119 RTERGDSALFTCE-IKS--QKISSQQMTYEASG----LKKKQNYIFYVTASTNIG-EGQP 170
              T R DS  F+C  I S  +     Q+T +       ++ K      +T    +G +G  
Sbjct:   854 PTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPEIEIKDVKARTITLRWTMGFDGN- 912

Query:   171 SKNVTLSPSNRVPARIASFNDNF-TATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENE 229
                   SP         + +D++ +A  T+D+  P L            TY IR+ A+N 
Sbjct:   913 ------SPITGYDIECKNKSDSWDSAQRTKDVS-PQLNSATIIDIHPSSTYSIRMYAKNR 965

Query:   230 IGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYK 289
             IG SEPS+ +TI   E AP GPP  + +E T   +++V+W  P++   NG+I+GY +GY+
Sbjct:   966 IGKSEPSNEITITADEAAPDGPPQEVHLEPTSSQSIRVTWKAPKKHLQNGIIRGYQIGYR 1025

Query:   290 ETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTA 349
             E ST   F F  +        E + TL +L  +TQY +VVQA N+ G GP S+E+   T 
Sbjct:  1026 EYSTGGNFQFNIISIDTTGDSEVY-TLDNLNKFTQYGLVVQACNRAGTGPSSQEIITTTL 1084

Query:   350 EGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
             E  P  PP++      + ++I +SW +      NG+++G++V+Y
Sbjct:  1085 EDVPSYPPENVQAIATSPESISISWSTLSKEALNGILQGFRVIY 1128

GO:0005886 "plasma membrane" evidence=ISO;ISS

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=ISO;ISS

GO:0007626 "locomotory behavior" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=ISO;ISS

GO:0030426 "growth cone" evidence=ISO;ISS

GO:0042327 "positive regulation of phosphorylation" evidence=ISO;ISS

GO:0048813 "dendrite morphogenesis" evidence=ISO

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IMP

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=ISO

GO:0070593 "dendrite self-avoidance" evidence=ISO;ISS

UNIPROTKB|O60469 DSCAM "Down syndrome cell adhesion molecule" [Homo sapiens (taxid:9606)]

 Score = 414 (150.8 bits), Expect = 3.9e-48, Sum P(4) = 3.9e-48
 Identities = 106/344 (30%), Positives = 173/344 (50%)

Query:    60 NQT-SRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIK 118
             N T + +G+   + C A GEKPI + W   ++ ++P+   RY +  + +   V+S L I 
Sbjct:   795 NTTLATQGQKKEMSCTAHGEKPIIVRWEKEDRIINPEMA-RYLVSTKEVGEEVISTLQIL 853

Query:   119 RTERGDSALFTCE-IKS--QKISSQQMTYEASG----LKKKQNYIFYVTASTNIG-EGQP 170
              T R DS  F+C  I S  +     Q+T +       ++ K      +T    +G +G  
Sbjct:   854 PTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPEIEIKDVKARTITLRWTMGFDGN- 912

Query:   171 SKNVTLSPSNRVPARIASFNDNF-TATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENE 229
                   SP         + +D++ +A  T+D+  P L            TY IR+ A+N 
Sbjct:   913 ------SPITGYDIECKNKSDSWDSAQRTKDVS-PQLNSATIIDIHPSSTYSIRMYAKNR 965

Query:   230 IGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYK 289
             IG SEPS+ +TI   E AP GPP  + +E     +++V+W  P++   NG+I+GY +GY+
Sbjct:   966 IGKSEPSNELTITADEAAPDGPPQEVHLEPISSQSIRVTWKAPKKHLQNGIIRGYQIGYR 1025

Query:   290 ETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTA 349
             E ST   F F  +        E + TL +L  +TQY +VVQA N+ G GP S+E+   T 
Sbjct:  1026 EYSTGGNFQFNIISVDTSGDSEVY-TLDNLNKFTQYGLVVQACNRAGTGPSSQEIITTTL 1084

Query:   350 EGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
             E  P  PP++      + ++I +SW +      NG+++G++V+Y
Sbjct:  1085 EDVPSYPPENVQAIATSPESISISWSTLSKEALNGILQGFRVIY 1128

GO:0007155 "cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042327 "positive regulation of phosphorylation" evidence=IDA

GO:0007162 "negative regulation of cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS;TAS

GO:0030426 "growth cone" evidence=ISS

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=ISS

GO:0030424 "axon" evidence=ISS

GO:0016020 "membrane" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

MGI|MGI:2150309 Dscaml1 "Down syndrome cell adhesion molecule like 1" [Mus musculus (taxid:10090)]

 Score = 380 (138.8 bits), Expect = 4.2e-47, Sum P(4) = 4.2e-47
 Identities = 72/174 (41%), Positives = 104/174 (59%)

Query:   220 YHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNG 279
             Y IR+ + N+IG SEPS  +TI T E AP GPP  + ++     +++V+W  P+++  NG
Sbjct:   958 YSIRMYSFNKIGRSEPSKELTISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNG 1017

Query:   280 VIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGP 339
             VI+GY +GY+E S      +  V+  K  G     TL +LK + QY VVVQA N+ G GP
Sbjct:  1018 VIRGYQIGYRENSPGSNGQYSIVEM-KATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGP 1076

Query:   340 MSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
              S E+   T E  P QPP++    ++TS    +SW  PP  T NGV+KGY+V++
Sbjct:  1077 SSSEINATTLEDVPSQPPENVRALSITSDVAVISWSEPPRSTLNGVLKGYRVIF 1130

GO:0005886 "plasma membrane" evidence=ISA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=ISO;ISA

GO:0007162 "negative regulation of cell adhesion" evidence=IMP

GO:0007399 "nervous system development" evidence=IEA

GO:0007420 "brain development" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016338 "calcium-independent cell-cell adhesion" evidence=ISA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0048704 "embryonic skeletal system morphogenesis" evidence=ISO

GO:0070593 "dendrite self-avoidance" evidence=IMP

UNIPROTKB|E1BZF3 E1BZF3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 379 (138.5 bits), Expect = 8.9e-47, Sum P(4) = 8.9e-47
 Identities = 72/174 (41%), Positives = 104/174 (59%)

Query:   220 YHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNG 279
             Y IR+ + N+IG SEPS  +TI T E AP GPP  + ++     +++V+W  P+++  NG
Sbjct:   963 YSIRMYSFNKIGRSEPSKELTISTEEAAPDGPPMDVTLQPMTSQSIQVTWKAPKKELQNG 1022

Query:   280 VIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGP 339
             VI+GY +GY+E S      +  V+  K  G     TL +LK + QY VVVQA N+ G GP
Sbjct:  1023 VIRGYQIGYRENSPGSNGQYSIVEM-KATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGP 1081

Query:   340 MSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
              S E+   T E  P QPP++    ++TS    +SW  PP  T NGV+KGY+V++
Sbjct:  1082 SSSEINATTLEDVPSQPPENVRAISITSDVAVISWSEPPRSTLNGVLKGYRVIF 1135

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA

GO:0070593 "dendrite self-avoidance" evidence=IEA

UNIPROTKB|F1MKB9 DSCAM "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 410 (149.4 bits), Expect = 1.8e-46, Sum P(3) = 1.8e-46
 Identities = 105/348 (30%), Positives = 176/348 (50%)

Query:    60 NQT-SRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIK 118
             N T + +G+   + C A GEKPI + W   ++ ++P+   RY +  + +   V+S L I 
Sbjct:   631 NTTLATQGQKKEMSCTAHGEKPIIVRWEKEDRIINPEMA-RYLVSTKEVGEEVISTLQIL 689

Query:   119 RTERGDSALFTCE-IKSQ-------KISSQQMTY--EASGLKKKQNYIFYVTASTNIG-E 167
              T R DS  F+C  I S        +++ Q  T   +   ++ K      +T    +G +
Sbjct:   690 PTVREDSGFFSCHAINSYGEDRGIIQLTVQDHTEPPDPPEIEIKDVKARTITLRWTMGFD 749

Query:   168 GQ-PSKNVTLSPSNRVPARIASFNDNF-TATYTEDIKLPCLTVGVPAPEIIWKTYHIRIV 225
             G  P     +   N+   +  +  D++ +A  T+D+  P L            TY IR+ 
Sbjct:   750 GNSPITGYDIECKNKSEKQ--NPKDSWDSAQRTKDVS-PQLNSATIIDIHPSSTYSIRMY 806

Query:   226 AENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYY 285
             A+N IG SEPS+ ++I   E AP GPP  + +E     +++V+W  P++   NG+I+GY 
Sbjct:   807 AKNRIGKSEPSNELSITADEAAPDGPPQEVHLEPISSQSIRVTWKAPKKHLQNGIIRGYQ 866

Query:   286 VGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVK 345
             +GY+E ST   F F  +        E + TL +L  +TQY +VVQA N+ G GP S+E+ 
Sbjct:   867 IGYREYSTGGNFQFNIISIDTTGDSEIY-TLDNLNKFTQYGLVVQACNRAGTGPSSQEII 925

Query:   346 QYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
               T E  P  PP++      + ++I +SW +      NG+++G++V+Y
Sbjct:   926 TTTLEDVPSYPPENVQAIATSPESISISWSTLSKEALNGILQGFRVIY 973

GO:0070593 "dendrite self-avoidance" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1N4K6 DSCAML1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 380 (138.8 bits), Expect = 2.3e-46, Sum P(4) = 2.3e-46
 Identities = 72/174 (41%), Positives = 104/174 (59%)

Query:   220 YHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNG 279
             Y IR+ + N+IG SEPS  +TI T E AP GPP  + ++     +++V+W  P+++  NG
Sbjct:   791 YSIRMYSFNKIGRSEPSKELTISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNG 850

Query:   280 VIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGP 339
             VI+GY +GY+E S      +  V+  K  G     TL +LK + QY VVVQA N+ G GP
Sbjct:   851 VIRGYQIGYRENSPGSNGQYSIVEM-KATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGP 909

Query:   340 MSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
              S E+   T E  P QPP++    ++TS    +SW  PP  T NGV+KGY+V++
Sbjct:   910 SSSEINATTLEDVPSQPPENVRALSITSDVAVISWSEPPRSTLNGVLKGYRVIF 963

GO:0070593 "dendrite self-avoidance" evidence=IEA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

UNIPROTKB|Q8TD84 DSCAML1 "Down syndrome cell adhesion molecule-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 380 (138.8 bits), Expect = 2.8e-46, Sum P(4) = 2.8e-46
 Identities = 72/174 (41%), Positives = 104/174 (59%)

Query:   220 YHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNG 279
             Y IR+ + N+IG SEPS  +TI T E AP GPP  + ++     +++V+W  P+++  NG
Sbjct:   958 YSIRMYSFNKIGRSEPSKELTISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNG 1017

Query:   280 VIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGP 339
             VI+GY +GY+E S      +  V+  K  G     TL +LK + QY VVVQA N+ G GP
Sbjct:  1018 VIRGYQIGYRENSPGSNGQYSIVEM-KATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGP 1076

Query:   340 MSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
              S E+   T E  P QPP++    ++TS    +SW  PP  T NGV+KGY+V++
Sbjct:  1077 SSSEINATTLEDVPSQPPENVRALSITSDVAVISWSEPPRSTLNGVLKGYRVIF 1130

GO:0016021 "integral to membrane" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0070593 "dendrite self-avoidance" evidence=IEA

GO:0007409 "axonogenesis" evidence=NAS

GO:0009986 "cell surface" evidence=IDA

GO:0009953 "dorsal/ventral pattern formation" evidence=NAS

GO:0007420 "brain development" evidence=IDA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IDA

GO:0007417 "central nervous system development" evidence=NAS

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0001709 "cell fate determination" evidence=NAS

GO:0005886 "plasma membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	543
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	6e-16
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	2e-12
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	8e-11
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-06
smart00410	85	smart00410, IG_like, Immunoglobulin like	4e-05
smart00409	85	smart00409, IG, Immunoglobulin	4e-05
cd05735	88	cd05735, Ig8_DSCAM, Eight immunoglobulin (Ig) doma	5e-05
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	6e-05
cd00096	74	cd00096, Ig, Immunoglobulin domain	2e-04
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	0.002
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	0.003
cd05758	98	cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (I	0.004

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 72.9 bits (179), Expect = 6e-16
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
            PPT+++V      ++ +SW+PPE D   G I GY V Y+E  +      +  +     G
Sbjct: 2   SPPTNLRVTDVTSTSVTLSWTPPEDD--GGPITGYVVEYREKGSG-----DWKEVEVTPG 54

Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT 348
            E   TL+ LK  T+Y   V+A+N  G  P SE V   T
Sbjct: 55  SETSYTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 63.0 bits (153), Expect = 2e-12
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
            PP++++V      ++ +SW PP  D   G I GY V Y+E  ++    ++ V+ +    
Sbjct: 2   SPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSE----WKEVNVT---P 54

Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPG 338
                TL+ LK  T+Y   V+A+N  G G
Sbjct: 55  SSTSYTLTGLKPGTEYEFRVRAVNGAGEG 83

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 57.8 bits (140), Expect = 8e-11
 Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 8/92 (8%)

Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
             PT++ V      +L +SWSPP     NG I GY V Y+  +  + +   TV      G
Sbjct: 1   SAPTNLTVTDVTSTSLTLSWSPPP---GNGPITGYEVEYRPVNGGEEWKEITVP-----G 52

Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMS 341
                TL+ LK  T+Y V VQA+N  G GP S
Sbjct: 53  TTTSYTLTGLKPGTEYEVRVQAVNGAGEGPPS 84

Length = 84

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 52  PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGV 111
           P+F  K ++   + GE +   C   G+    + W  + + L  +S +R+ +  E    G 
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPL--RSSDRFKVTYE----GG 54

Query: 112 LSDLSIKRTERGDSALFTC 130
              L+I   +  D   +TC
Sbjct: 55  TYTLTISNVQPDDEGKYTC 73

Length = 90

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 59  RNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIK 118
            + T + GE   L CEA G  P  + W     +L      R+++      +G  S L+I 
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKL-LAESGRFSVSR----SGSTSTLTIS 56

Query: 119 RTERGDSALFTCEIKSQKIS 138
                DS  +TC   +   S
Sbjct: 57  NVTPEDSGTYTCAATNSSGS 76

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 59  RNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIK 118
            + T + GE   L CEA G  P  + W     +L      R+++      +G  S L+I 
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKL-LAESGRFSVSR----SGSTSTLTIS 56

Query: 119 RTERGDSALFTCEIKSQKIS 138
                DS  +TC   +   S
Sbjct: 57  NVTPEDSGTYTCAATNSSGS 76

Length = 85

>gnl|CDD|143212 cd05735, Ig8_DSCAM, Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 66  GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDS 125
           G+   + C A GEKPI + W   ++ ++P+  +RY +  + + + V+S L I  T R DS
Sbjct: 1   GQKKEMSCTAHGEKPIIVRWEKEDRIINPEM-SRYLVSTKEVGDEVISTLQILPTVREDS 59

Query: 126 ALFTC 130
             F+C
Sbjct: 60  GFFSC 64

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 88

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 62  TSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVL--SDLSIKR 119
            + RG P VL C A+GE P  I W  +   L+  SD R     + LPNG L  + +   +
Sbjct: 10  VAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERR----QQLPNGSLLITSVVHSK 65

Query: 120 TERGDSALFTCE 131
             + D   + C 
Sbjct: 66  HNKPDEGFYQCV 77

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 18/64 (28%), Positives = 20/64 (31%), Gaps = 2/64 (3%)

Query: 70  VLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFT 129
            L C A G  P  I W  N K L      R             S L+I      DS  +T
Sbjct: 2   TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGS--STLTISNVTLEDSGTYT 59

Query: 130 CEIK 133
           C   
Sbjct: 60  CVAS 63

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 70  VLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFT 129
             QCE  G+    +LW   +  L PK   R  I ++         L I+    GD   +T
Sbjct: 2   EFQCEVGGDPVPTVLWRKEDGEL-PKG--RAEILDD-------KSLKIRNVTAGDEGSYT 51

Query: 130 CE 131
           CE
Sbjct: 52  CE 53

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 64  RRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSI--KRTE 121
            +G+P+ L C+A+G     I W  N + L+   D+  +    +LP+G L  L +   R  
Sbjct: 14  SKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRS-HRIVLPSGSLFFLRVVHGRKG 72

Query: 122 RGDSALFTCEIK 133
           R D  ++ C   
Sbjct: 73  RSDEGVYVCVAH 84

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143235 cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 58  LRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLS 116
              Q +  G+   ++C       P  I+W      L+  S  RYT+  +  P GVLS L+
Sbjct: 8   EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLT 67

Query: 117 IKRTERGD 124
           I  T+  D
Sbjct: 68  ISNTQESD 75

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Length = 98

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	543
KOG3513|consensus	1051		100.0
KOG4221|consensus	1381		100.0
KOG4221|consensus	1381		100.0
KOG3513|consensus	1051		100.0
KOG4222|consensus	1281		100.0
KOG4222|consensus	1281		99.92
KOG4194|consensus	873		99.79
KOG0196|consensus	996		99.71
PHA02826	227	IL-1 receptor-like protein; Provisional	99.66
PHA02785	326	IL-beta-binding protein; Provisional	99.64
PHA02785	326	IL-beta-binding protein; Provisional	99.63
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.62
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.6
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.56
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.55
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.54
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.52
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.5
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.5
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.5
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.5
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.5
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.49
KOG4194|consensus	873		99.49
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.48
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.48
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.48
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.48
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.47
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.47
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.47
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.47
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.46
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.46
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.46
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.46
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.44
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.44
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.44
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.44
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.43
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.43
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.43
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.43
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.43
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.42
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.42
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.41
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.41
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.41
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.41
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.41
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.38
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.38
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.37
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.37
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.36
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.36
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.36
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.36
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.35
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.35
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.34
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.34
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.33
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.33
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.33
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.32
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.32
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.32
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.31
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.3
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.3
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.3
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.3
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.27
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.27
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.27
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.26
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.26
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.25
KOG4258|consensus	1025		99.25
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.25
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.25
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.24
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.24
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.23
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.22
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.21
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.2
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.18
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.17
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.15
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	99.15
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.14
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.13
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.13
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.13
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.13
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.11
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.1
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.09
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.09
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.07
KOG0196|consensus	996		98.99
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.99
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.99
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.92
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.91
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.89
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.88
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.84
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.82
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	98.81
KOG4802|consensus	516		98.8
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.77
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.76
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.75
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.75
smart00409	86	IG Immunoglobulin.	98.71
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.71
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.69
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.69
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	98.65
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.65
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.63
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.61
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	98.58
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.54
PHA02826	227	IL-1 receptor-like protein; Provisional	98.53
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.53
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.46
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.44
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	98.44
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	98.43
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.41
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	98.39
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	98.39
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	98.38
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	98.37
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.37
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	98.35
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.34
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	98.33
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	98.33
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	98.33
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.31
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.3
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.29
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.29
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.28
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.27
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.27
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.26
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	98.26
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	98.24
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.22
KOG3515|consensus	741		98.21
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.2
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	98.2
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.19
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	98.18
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.18
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.18
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.18
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.17
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.17
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.17
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.16
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.16
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.14
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.14
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.13
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.13
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	98.12
KOG4258|consensus	1025		98.11
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.11
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.11
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	98.1
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.1
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.1
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.09
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.09
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	98.09
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.09
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.08
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	98.08
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.06
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.06
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.06
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.06
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.05
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.03
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.03
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	98.03
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	98.02
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.02
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.02
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.01
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.01
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.01
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.01
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	97.99
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.97
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.96
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.96
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	97.94
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	97.93
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.93
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	97.91
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.91
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	97.91
KOG3515|consensus	741		97.91
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.9
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.88
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	97.88
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	97.86
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.86
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.84
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	97.84
PHA03376	221	BARF1; Provisional	97.84
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	97.83
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.81
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.8
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	97.8
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	97.79
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	97.79
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	97.78
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	97.78
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.76
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	97.75
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	97.75
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	97.75
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	97.75
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	97.75
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.74
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.73
KOG4802|consensus	516		97.73
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	97.72
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.72
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	97.72
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.71
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	97.71
smart00407	75	IGc1 Immunoglobulin C-Type.	97.71
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	97.7
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.7
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	97.68
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.66
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	97.64
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	97.64
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.62
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	97.62
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.62
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.61
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	97.6
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	97.58
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	97.58
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.57
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	97.57
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	97.57
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	97.54
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.54
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	97.53
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.52
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	97.52
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	97.48
PHA03376	221	BARF1; Provisional	97.44
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	97.38
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.36
smart00406	81	IGv Immunoglobulin V-Type.	97.35
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	97.35
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.34
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.3
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	97.3
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	97.29
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	97.28
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	97.27
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.21
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.21
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	97.2
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.2
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	97.17
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	97.17
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	97.16
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	97.02
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	96.9
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	96.9
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.87
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	96.81
KOG3632|consensus	1335		96.75
smart00408	63	IGc2 Immunoglobulin C-2 Type.	96.68
KOG4152|consensus	830		96.65
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	96.64
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	96.62
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.57
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.57
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	96.55
PF09294	106	Interfer-bind: Interferon-alpha/beta receptor, fib	96.51
PF10179	300	DUF2369: Uncharacterised conserved protein (DUF236	96.5
KOG4367|consensus	699		96.46
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	96.44
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.33
KOG1480|consensus	909		96.31
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	96.26
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	96.21
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	96.14
KOG0613|consensus	1205		96.11
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	95.99
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	95.87
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	95.82
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	95.81
smart00409	86	IG Immunoglobulin.	95.8
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	95.8
COG3401	343	Fibronectin type 3 domain-containing protein [Gene	95.75
KOG0613|consensus	1205		95.74
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	95.67
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	95.61
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	95.57
PHA03269	566	envelope glycoprotein C; Provisional	95.56
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	95.49
PF00047	64	ig: Immunoglobulin domain The Prosite family only	95.45
PHA03271	490	envelope glycoprotein C; Provisional	95.44
PHA02633	63	hypothetical protein; Provisional	95.26
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	95.24
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	95.16
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	95.15
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	95.06
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	95.0
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	94.91
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	94.81
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	94.78
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	94.7
PHA03270	466	envelope glycoprotein C; Provisional	94.59
KOG4597|consensus	560		94.52
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	94.5
PHA03273	486	envelope glycoprotein C; Provisional	94.36
KOG4367|consensus	699		94.28
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	94.11
PF09067	104	EpoR_lig-bind: Erythropoietin receptor, ligand bin	94.06
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	93.98
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	93.94
KOG4228|consensus	1087		93.8
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	93.67
PHA02982	251	hypothetical protein; Provisional	93.64
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	93.49
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	93.29
PF10179	300	DUF2369: Uncharacterised conserved protein (DUF236	93.28
KOG4152|consensus	830		93.03
PHA03042	286	CD47-like protein; Provisional	92.9
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	92.89
PHA02633	63	hypothetical protein; Provisional	92.81
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	92.63
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	92.43
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	92.39
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	92.35
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	92.25
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	92.19
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	92.13
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	91.52
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	91.4
PHA02865	338	MHC-like TNF binding protein; Provisional	91.29
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	91.18
PF09240	99	IL6Ra-bind: Interleukin-6 receptor alpha chain, bi	90.92
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	90.67
COG4733	952	Phage-related protein, tail component [Function un	90.26
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	89.75
PLN02533	427	probable purple acid phosphatase	89.72
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	89.59
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	89.55
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	89.16
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	88.97
PHA03052	69	Hypothetical protein; Provisional	88.84
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	88.56
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	88.52
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	88.37
COG3401	343	Fibronectin type 3 domain-containing protein [Gene	88.03
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	87.78
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	86.88
PHA02987	189	Ig domain OX-2-like protein; Provisional	85.81
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	85.02
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	84.86
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	84.43
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	83.18
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	82.17
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	81.82
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	80.62
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	80.55
PHA02914	500	Immunoglobulin-like domain protein; Provisional	80.31
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	80.24

>KOG3513|consensus

Probab=100.00  E-value=2.4e-47  Score=386.14  Aligned_cols=428  Identities=22%  Similarity=0.316  Sum_probs=324.8

Q ss_pred             cEEEeecCC------CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCCeEEeecceeEeecCCCeEE
Q psy3718           3 NFFFYRGFN------PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPPEFEIKLRNQTSRRGEPSVL   71 (543)
Q Consensus         3 ~~~~~~~~~------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p~~~~~~~~~~v~~g~~~~l   71 (543)
                      -++|.++.+      ++.++.||+|.|.|    |+|.|+|+|.|.+|.. ..+.|.|..+++|+..|++..+..|+.+.|
T Consensus       457 ~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l  536 (1051)
T KOG3513|consen  457 KVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVTL  536 (1051)
T ss_pred             eEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEEE
Confidence            467766544      55667999999999    9999999999999997 678999999999999999999999999999


Q ss_pred             EEEeeccCC--ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceeeeee-eeccc
Q psy3718          72 QCEAKGEKP--IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMT-YEASG  148 (543)
Q Consensus        72 ~C~~~g~p~--~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~~~~-~~v~~  148 (543)
                      .|.+..++.  +.+.|.+||.+++............  ..+. +.|+|.|++..|+|.|.|+|+....++.... ..+++
T Consensus       537 ~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~--~~~~-g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~g  613 (1051)
T KOG3513|consen  537 TCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEIND--GSDS-GRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRG  613 (1051)
T ss_pred             EeecccCCCcceEEEEEECCEEhhccCCCCceEEeC--CcCc-cceEEEeeccccCceEEEEEEEeecchhcccceEEec
Confidence            999998876  6888999999987765443333322  1222 4699999999999999999999644432111 11111


Q ss_pred             ccccceEEEEEEEecccCCCCCCCcEEee-------ecCCCCcceeEeccCcccccccceecccccccc----CCCCccc
Q psy3718         149 LKKKQNYIFYVTASTNIGEGQPSKNVTLS-------PSNRVPARIASFNDNFTATYTEDIKLPCLTVGV----PAPEIIW  217 (543)
Q Consensus       149 l~~~~~y~~~v~a~~~~g~~~~s~~~~~~-------pi~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~----p~p~~~w  217 (543)
                       .|+..-.+.+..     ....+..+.|+       ||..|   .|+++....+.|....+++....|.    -.++..|
T Consensus       614 -pPgpP~~v~~~~-----i~~t~~~lsW~~g~dn~SpI~~Y---~iq~rt~~~~~W~~v~~vp~~~~~~~sa~vv~L~Pw  684 (1051)
T KOG3513|consen  614 -PPGPPPDVHVDD-----ISDTTARLSWSPGSDNNSPIEKY---TIQFRTPFPGKWKAVTTVPGNITGDESATVVNLSPW  684 (1051)
T ss_pred             -CCCCCCceeEee-----eccceEEEEeecCCCCCCCceEE---eEEecCCCCCcceEeeECCCcccCccceeEEccCCC
Confidence             011100111111     11111222222       89999   9999999999999998888877642    3466788


Q ss_pred             eEEEEEEEEEcCCCCCCCCccE-EEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCC
Q psy3718         218 KTYHIRIVAENEIGSSEPSDTV-TILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKP  296 (543)
Q Consensus       218 ~~y~~~v~a~n~~G~~~~s~~~-~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~  296 (543)
                      ..|+|||.|.|..|.+++|.+. .++|.+++|...|.++.......+.+.|.|++.....++++..+|+|.|+..+....
T Consensus       685 v~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~~  764 (1051)
T KOG3513|consen  685 VEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGADKE  764 (1051)
T ss_pred             cceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCCcc
Confidence            9999999999999999999876 678999999999999999999999999999999888889999999999999998855


Q ss_pred             ceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCCCCcceeeeccCCCCCCCCCCcEEEEeccCeEEEEccC
Q psy3718         297 FLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVS  376 (543)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~  376 (543)
                      |....+.  .......-+......|++.|+++|+|+|..|.|+.+....+.+.++.|..+|..+.+...+.+.+.|.|++
T Consensus       765 W~~~~v~--~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~~s~s~~~v~W~~  842 (1051)
T KOG3513|consen  765 WKEVIVS--NQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKPLSSSEVNLSWKP  842 (1051)
T ss_pred             cceeEec--ccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccceeecccCceEEEEecC
Confidence            5544442  11122333344556779999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEeeCCCCCCCCCccceeeeeCCC
Q psy3718         377 PPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPR  456 (543)
Q Consensus       377 p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~  456 (543)
                      |.                                           ..||.+++|.|+|+..+..++......   ..-+.
T Consensus       843 ~~-------------------------------------------~~nG~l~gY~v~Y~~~~~~~~~~~~~~---i~~~~  876 (1051)
T KOG3513|consen  843 PL-------------------------------------------WDNGKLTGYEVKYWKINEKEGSLSRVQ---IAGNR  876 (1051)
T ss_pred             cC-------------------------------------------ccCCccceeEEEEEEcCCCccccccee---ecCCc
Confidence            73                                           234566666666666554311111111   11233


Q ss_pred             CccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcccccc
Q psy3718         457 GRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDRV  504 (543)
Q Consensus       457 ~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~v  504 (543)
                      ....++||+|. .|.|.|+|              .|.+|.|+.+....+
T Consensus       877 ~~~~ltgL~~~T~Y~~~vrA--------------~nsaG~Gp~s~~~~~  911 (1051)
T KOG3513|consen  877 TSWRLTGLEPNTKYRFYVRA--------------YTSAGGGPASSEENV  911 (1051)
T ss_pred             ceEeeeCCCCCceEEEEEEE--------------ecCCCCCCCccceec
Confidence            33455599999 99999999              999998888665555

>KOG4221|consensus

Probab=100.00  E-value=6.4e-47  Score=380.42  Aligned_cols=356  Identities=26%  Similarity=0.412  Sum_probs=288.5

Q ss_pred             ecCceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCe
Q psy3718          16 LGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNK   90 (543)
Q Consensus        16 ~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~   90 (543)
                      +..++|.|++    |+|.|+|+|+|..... +++.|+|+.||.|...|.+...-++.++.|.|.+.|.|.|.+.|+|+|.
T Consensus       288 ~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd  367 (1381)
T KOG4221|consen  288 VGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGD  367 (1381)
T ss_pred             ecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCc
Confidence            3367999999    9999999999977775 7899999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceeee-----------------------------
Q psy3718          91 RLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQ-----------------------------  141 (543)
Q Consensus        91 ~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~~-----------------------------  141 (543)
                      .+.+.+  .+.+.    .+   ++|.|..+-.+|.|.|.|.|+|..|.++.                             
T Consensus       368 ~~ipsd--y~ki~----~~---~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~  438 (1381)
T KOG4221|consen  368 RIIPSD--YFKIV----GG---GNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANL  438 (1381)
T ss_pred             ccCccc--ceEec----CC---CCcEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceeccc
Confidence            987633  44432    22   24999999999999999999999665320                             


Q ss_pred             --------------------------------------------eeeecccccccceEEEEEEEecccCCCCCCCcEEee
Q psy3718         142 --------------------------------------------MTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLS  177 (543)
Q Consensus       142 --------------------------------------------~~~~v~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~  177 (543)
                                                                  ....+..|.|.+.|.|+|.|.|..|.|.++..+.+.
T Consensus       439 ~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~  518 (1381)
T KOG4221|consen  439 VSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVT  518 (1381)
T ss_pred             ccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeecccceeEEEEEeccCcccCCccCCceEEe
Confidence                                                        233456688999999999999999999888777765


Q ss_pred             -------------------------------ecCCCCcceeEeccCcccccccceecc--ccccc-cCCCCccceEEEEE
Q psy3718         178 -------------------------------PSNRVPARIASFNDNFTATYTEDIKLP--CLTVG-VPAPEIIWKTYHIR  223 (543)
Q Consensus       178 -------------------------------pi~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~g-~p~p~~~w~~y~~~  223 (543)
                                                     |+.+|   .+.+..+..+.|.......  ....| .|.     +.|.|+
T Consensus       519 t~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I~~y---k~~ys~~~~~~~~~~~~n~~e~ti~gL~k~-----TeY~~~  590 (1381)
T KOG4221|consen  519 TQPEGPVQLQAYATSPTTILVTWEPPPFGNGPITGY---KLFYSEDDTGKELRVENNATEYTINGLEKY-----TEYSIR  590 (1381)
T ss_pred             cCCCCCccccccccCcceEEEEecCCCCCCCCceEE---EEEEEcCCCCceEEEecCccEEEeecCCCc-----cceEEE
Confidence                                           45555   5655554344333322111  11133 788     999999


Q ss_pred             EEEEcCCCCCCCCccEEEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEe
Q psy3718         224 IVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVD  303 (543)
Q Consensus       224 v~a~n~~G~~~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~  303 (543)
                      |.|.|..|.+..|..+.+.+..+.|..||.|+.+...++++|.|+|.+|.....++.+.+|.++|+.........+..+ 
T Consensus       591 vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v-  669 (1381)
T KOG4221|consen  591 VVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVV-  669 (1381)
T ss_pred             EEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeec-
Confidence            9999999999999999999999999999999999999999999999999998889999999999997765544333333 


Q ss_pred             eeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCCCCcceeeeccCCCCC----CCCCCcEEEEeccCeEEEEccCCCC
Q psy3718         304 FSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPE----QPPQDNTCTTLTSQTIRVSWVSPPL  379 (543)
Q Consensus       304 ~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t~~~~p~----~~P~~~~~~~~~~~~v~l~W~~p~~  379 (543)
                          .++.+.|.+.+|+|++.|.|+|.|.+..|.|++|++..+.|....+.    .+|..+.+ ....+++.+.|.||+ 
T Consensus       670 ----~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~vp~~ps~l~~-~~g~~si~vsW~Pp~-  743 (1381)
T KOG4221|consen  670 ----KGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESDLDERVPGKPSELHV-HPGSNSIVVSWTPPP-  743 (1381)
T ss_pred             ----ccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCccccccccCCCCCceeee-ccCceeEEEEeCCCC-
Confidence                45778999999999999999999999999999999999999754332    13444443 345678999999885 


Q ss_pred             CCCCCceEEEEEEEEeC
Q psy3718         380 ITANGVIKGYKVVYGPS  396 (543)
Q Consensus       380 ~~~~~~i~~Y~v~~~~~  396 (543)
                       ..+..+.||+|.|++.
T Consensus       744 -~~~~~vrgY~ig~r~g  759 (1381)
T KOG4221|consen  744 -HPNIVVRGYKIGYRPG  759 (1381)
T ss_pred             -ChhhhhcceEEeeecc
Confidence             5677899999999653

>KOG4221|consensus

Probab=100.00  E-value=2.6e-44  Score=361.74  Aligned_cols=434  Identities=25%  Similarity=0.353  Sum_probs=314.6

Q ss_pred             CeEEecCceEEEec----CCeEEEEEEecCCCCC--CCceEEEeCC------CeEEeecceeEeecCCCeEEEEEeeccC
Q psy3718          12 PRILLGRVLLPIGE----SSFHFDPELLNPSFNG--FPPLLLSSAP------PEFEIKLRNQTSRRGEPSVLQCEAKGEK   79 (543)
Q Consensus        12 ~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~--~s~~l~v~~~------p~~~~~~~~~~v~~g~~~~l~C~~~g~p   79 (543)
                      +.+++.+|.|.|.+    |.|.|+|.+++..-+.  ..+.|+|..-      -.|...|++..+..|+++.|.|.++|.|
T Consensus       186 r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p  265 (1381)
T KOG4221|consen  186 RVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVP  265 (1381)
T ss_pred             cEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCC
Confidence            44558899999999    9999999999987654  3478888532      2467789999999999999999999999


Q ss_pred             CceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccce--------eeeee------ee
Q psy3718          80 PIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS--------SQQMT------YE  145 (543)
Q Consensus        80 ~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s--------v~~~~------~~  145 (543)
                      .|.|.|+||++.|..+. .++.+-       ..++|.|.+++..|+|.|+|.|+|...+        |+.+|      .+
T Consensus       266 ~p~v~Wlrng~~i~~ds-~rivl~-------g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~  337 (1381)
T KOG4221|consen  266 KPSVKWLRNGEKISVDS-YRIVLV-------GGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTT  337 (1381)
T ss_pred             CCceEEeeCCeeeeecc-eEEEEe-------cccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcc
Confidence            99999999999997644 444432       2258999999999999999999995222        11111      00


Q ss_pred             ccccc-------------cc--------------ceEEE--------------------EEEEecccCCCCCCCcEEee-
Q psy3718         146 ASGLK-------------KK--------------QNYIF--------------------YVTASTNIGEGQPSKNVTLS-  177 (543)
Q Consensus       146 v~~l~-------------~~--------------~~y~~--------------------~v~a~~~~g~~~~s~~~~~~-  177 (543)
                      +...+             |-              ..|.-                    .+.+.|..|.......+... 
T Consensus       338 l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~  417 (1381)
T KOG4221|consen  338 LVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVP  417 (1381)
T ss_pred             eeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcccccchhhheecc
Confidence            00000             00              00000                    11111111111111111000 


Q ss_pred             ---------------------------------------ecCCCCcceeEeccCcccccccceeccc--cc----cccCC
Q psy3718         178 ---------------------------------------PSNRVPARIASFNDNFTATYTEDIKLPC--LT----VGVPA  212 (543)
Q Consensus       178 ---------------------------------------pi~~~~~~~v~~~~~~~~~~~~~~~~~~--~~----~g~p~  212 (543)
                                                             ++..|   .+.+.. ....|........  ..    +-.|.
T Consensus       418 ~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~---~v~~~~-~~~~rer~~~tss~g~~~tv~nl~p~  493 (1381)
T KOG4221|consen  418 QPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTY---TVFYKV-EGDVRERLQNTSSPGIQVTVQNLSPL  493 (1381)
T ss_pred             CCcccccCccccCCcceecccccceeEEEeecCccccCCCcceE---EEEEec-CCchhhhheeccCCceEEEeeecccc
Confidence                                                   11111   122222 1222222222111  11    11788


Q ss_pred             CCccceEEEEEEEEEcCCCCCCCCccEEEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcC
Q psy3718         213 PEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETS  292 (543)
Q Consensus       213 p~~~w~~y~~~v~a~n~~G~~~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~  292 (543)
                           +.|.|+|.|.|..|.+..+.++.+.+.+..   ++ .+.+...+..++.+.|++|...  ++++++|++.|...+
T Consensus       494 -----t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEg---p~-~~~a~ats~~ti~v~WepP~~~--n~~I~~yk~~ys~~~  562 (1381)
T KOG4221|consen  494 -----TMYFFRVRAKNEAGSGESSAPLKVTTQPEG---PV-QLQAYATSPTTILVTWEPPPFG--NGPITGYKLFYSEDD  562 (1381)
T ss_pred             -----eeEEEEEeccCcccCCccCCceEEecCCCC---Cc-cccccccCcceEEEEecCCCCC--CCCceEEEEEEEcCC
Confidence                 999999999999999999999999877662   33 3888888999999999999866  899999999998774


Q ss_pred             CCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCCCCcceeeeccCCCCCCCCCCcEEEEeccCeEEE
Q psy3718         293 TDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRV  372 (543)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l  372 (543)
                      ...+   ..+     ..+..+++|.+|+++++|.|+|.|.|.+|.|..|..+.+.|..+.|+.||.|+++...++++|.|
T Consensus       563 ~~~~---~~~-----~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrV  634 (1381)
T KOG4221|consen  563 TGKE---LRV-----ENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRV  634 (1381)
T ss_pred             CCce---EEE-----ecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEE
Confidence            4322   222     34778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCCCCCCceEEEEEEEEeCCc-----ccCCCCCC-----------c-----------------------------
Q psy3718         373 SWVSPPLITANGVIKGYKVVYGPSDT-----WYGDPKTD-----------I-----------------------------  407 (543)
Q Consensus       373 ~W~~p~~~~~~~~i~~Y~v~~~~~~~-----~~~~~~~~-----------~-----------------------------  407 (543)
                      .|.+|+.+..+|.|.+|+|+|+....     |....-..           +                             
T Consensus       635 sW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d  714 (1381)
T KOG4221|consen  635 SWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESD  714 (1381)
T ss_pred             EccCCCcccccceEEEEEEEecccCcccccceeecccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCcccc
Confidence            99999989999999999999996431     11111000           0                             


Q ss_pred             -----------------cceEEEEeeCCCCCCCCcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCcccc--ccccCc-
Q psy3718         408 -----------------CTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMY--EELKSQ-  467 (543)
Q Consensus       408 -----------------~~~~~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~L~p~-  467 (543)
                                       .+.+.+.|.||  .+++-.+.+|+|.|+..... .+...+.     ++..+..+  ..|.|+ 
T Consensus       715 ~~e~vp~~ps~l~~~~g~~si~vsW~Pp--~~~~~~vrgY~ig~r~g~~~-p~~~tIr-----l~~~~s~y~l~~Le~~~  786 (1381)
T KOG4221|consen  715 LDERVPGKPSELHVHPGSNSIVVSWTPP--PHPNIVVRGYKIGYRPGSGI-PDTGTIR-----LDEKVSYYNLEQLEPNR  786 (1381)
T ss_pred             ccccCCCCCceeeeccCceeEEEEeCCC--CChhhhhcceEEeeecccCC-CCCccEE-----ecceeeEEEEEecccCc
Confidence                             48999999999  88888999999999754443 3355555     66655444  499999 


Q ss_pred             eeeEEEEeCCCCCCCCCCccccccccccCCC
Q psy3718         468 GRGYLVPRGGPPPCPGSDETLYSRHRGESDK  498 (543)
Q Consensus       468 ~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~  498 (543)
                      .|.++++|              .|..|+|.+
T Consensus       787 ~YvVkL~A--------------fNn~gdG~p  803 (1381)
T KOG4221|consen  787 DYVVKLRA--------------FNNHGDGNP  803 (1381)
T ss_pred             eEEEEEEE--------------eccCCCCcc
Confidence            99999999              999999987

>KOG3513|consensus

Probab=100.00  E-value=1.2e-39  Score=330.57  Aligned_cols=375  Identities=21%  Similarity=0.338  Sum_probs=259.6

Q ss_pred             ccEEEeecCC----CeEE--ecCceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCCeEEeecceeEeecCCCeE
Q psy3718           2 ENFFFYRGFN----PRIL--LGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPPEFEIKLRNQTSRRGEPSV   70 (543)
Q Consensus         2 ~~~~~~~~~~----~~~~--~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p~~~~~~~~~~v~~g~~~~   70 (543)
                      |.+.|.|.+.    +|..  ..+.+|.|.|    |+|.|+|.|.|..|.. ...+|+|+++|.++..+++..+..|++++
T Consensus       271 P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~  350 (1051)
T KOG3513|consen  271 PQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVT  350 (1051)
T ss_pred             CcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeE
Confidence            6788987555    3333  3456999999    9999999999999975 56899999999999999999999999999


Q ss_pred             EEEEeeccCCceEEEccCCeecCCCCC-CceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee---------
Q psy3718          71 LQCEAKGEKPIGILWNMNNKRLDPKSD-NRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ---------  140 (543)
Q Consensus        71 l~C~~~g~p~~~i~W~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~---------  140 (543)
                      |.|.+.|.|.|++.|++||.++...+. .++.+..        +.|.|.+++.+|+|.|.|.|+|..|.+-         
T Consensus       351 ~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~--------g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a  422 (1051)
T KOG3513|consen  351 LECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDD--------GTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLA  422 (1051)
T ss_pred             EEEEecCCCCCceEEeeCCeecCccCCCcceEEeC--------CEEEEEecccccCeEEEeeeecccceEeeeeEEEEEc
Confidence            999999999999999999999974332 3355543        2799999999999999999999976521         


Q ss_pred             -------------------------------------------------------eeeeecccccccceEEEEEEEeccc
Q psy3718         141 -------------------------------------------------------QMTYEASGLKKKQNYIFYVTASTNI  165 (543)
Q Consensus       141 -------------------------------------------------------~~~~~v~~l~~~~~y~~~v~a~~~~  165 (543)
                                                                             +..+.+..+.....-.+.+.|.|..
T Consensus       423 ~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~  502 (1051)
T KOG3513|consen  423 SAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKL  502 (1051)
T ss_pred             cCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEccc
Confidence                                                                   1122223333333445556666666


Q ss_pred             CCCCCCCcEEeeecCCCCcceeEeccCcccccccceeccccccc--cCCCCccc--------------------------
Q psy3718         166 GEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVG--VPAPEIIW--------------------------  217 (543)
Q Consensus       166 g~~~~s~~~~~~pi~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g--~p~p~~~w--------------------------  217 (543)
                      |+......+.+.-.+.    ++....+....-.....+.|...-  .....+.|                          
T Consensus       503 G~a~~~~~L~Vkd~tr----i~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~  578 (1051)
T KOG3513|consen  503 GKAESTGNLIVKDATR----ITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGR  578 (1051)
T ss_pred             CccceEEEEEEecCce----EEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccc
Confidence            6554333333320000    000000011111111112222110  00001111                          


Q ss_pred             ---------eEEEEEEEEEcCCCCCCCCccEEEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEE
Q psy3718         218 ---------KTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGY  288 (543)
Q Consensus       218 ---------~~y~~~v~a~n~~G~~~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~  288 (543)
                               ....|.|.+............+.++    .|+.||.++.+...+.+++.|+|.+..+.  +++|..|.|++
T Consensus       579 L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~----gpPgpP~~v~~~~i~~t~~~lsW~~g~dn--~SpI~~Y~iq~  652 (1051)
T KOG3513|consen  579 LTIANVSLEDSGKYTCVAQTALDSASARADLLVR----GPPGPPPDVHVDDISDTTARLSWSPGSDN--NSPIEKYTIQF  652 (1051)
T ss_pred             eEEEeeccccCceEEEEEEEeecchhcccceEEe----cCCCCCCceeEeeeccceEEEEeecCCCC--CCCceEEeEEe
Confidence                     2235666666555444444456665    34567779999999999999999999887  68899999999


Q ss_pred             EEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCCCCcce-eeeccCCCCCCCCCCcEEEEecc
Q psy3718         289 KETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEV-KQYTAEGTPEQPPQDNTCTTLTS  367 (543)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~-~~~t~~~~p~~~P~~~~~~~~~~  367 (543)
                      +..-...+....++.... .+. .+.++-+|.|...|+|||+|+|..|.|.+|.+. ...|.+++|...|.++.......
T Consensus       653 rt~~~~~W~~v~~vp~~~-~~~-~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~  730 (1051)
T KOG3513|consen  653 RTPFPGKWKAVTTVPGNI-TGD-ESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSP  730 (1051)
T ss_pred             cCCCCCcceEeeECCCcc-cCc-cceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCC
Confidence            887555443333332111 122 367889999999999999999999999888765 48899999999999999988888


Q ss_pred             CeEEEEccCCCCCCCCCceEEEEEEEEeC
Q psy3718         368 QTIRVSWVSPPLITANGVIKGYKVVYGPS  396 (543)
Q Consensus       368 ~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~  396 (543)
                      +.+.|.|+|.+.+.++|.-.+|+|.|++.
T Consensus       731 ~eLvItW~Pl~~~~qNG~gfgY~Vswr~~  759 (1051)
T KOG3513|consen  731 TELVITWEPLPEEEQNGPGFGYRVSWRPQ  759 (1051)
T ss_pred             ceEEEEeccCCHHHccCCCceEEEEEEeC
Confidence            99999999887666666666666666553

>KOG4222|consensus

Probab=100.00  E-value=7.6e-33  Score=277.93  Aligned_cols=457  Identities=20%  Similarity=0.250  Sum_probs=302.7

Q ss_pred             CeEEecCceEEEec----CCeEEEEEEecCCCCCCC--ceEEEeCCCeEEeecceeEeecCCCeEEEEEeeccCCceEEE
Q psy3718          12 PRILLGRVLLPIGE----SSFHFDPELLNPSFNGFP--PLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILW   85 (543)
Q Consensus        12 ~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~~s--~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W   85 (543)
                      .+.++++|.|.|.|    |+|.|.|+|.|.+|+..+  ++|.|+.+|.|..+|.++.+.+|..+.|.|.+.|+|.|.+.|
T Consensus       180 ~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrw  259 (1281)
T KOG4222|consen  180 IIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRW  259 (1281)
T ss_pred             eEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceee
Confidence            45568899999999    999999999999999743  799999999999999999999999999999999999999999


Q ss_pred             ccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee--------eeeeeecccccccceEEE
Q psy3718          86 NMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS--------QQMTYEASGLKKKQNYIF  157 (543)
Q Consensus        86 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv--------~~~~~~v~~l~~~~~y~~  157 (543)
                      .+++..+.   ..++.|..+      ..+|.|.++++.|.|.|.|.|.|..|..        +..+-..........|.=
T Consensus       260 kk~~~~~P---~~ry~i~~d------~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg  330 (1281)
T KOG4222|consen  260 KKDDPSLP---RSRYSILDD------TQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALG  330 (1281)
T ss_pred             eccCCCCC---ccceeeeec------cccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccC
Confidence            99887774   235555432      1379999999999999999999996652        221111111111111110


Q ss_pred             EEEEecccCCCCCCCcEEee------------------------------------------------------------
Q psy3718         158 YVTASTNIGEGQPSKNVTLS------------------------------------------------------------  177 (543)
Q Consensus       158 ~v~a~~~~g~~~~s~~~~~~------------------------------------------------------------  177 (543)
                      +..-+.+...|.|...+.|.                                                            
T Consensus       331 ~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~q  410 (1281)
T KOG4222|consen  331 GTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQ  410 (1281)
T ss_pred             ceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEE
Confidence            11111111222222222221                                                            


Q ss_pred             --ecCC-CCcceeEeccC-cccccccceeccccccccCCCCccc------------------------------eEEEEE
Q psy3718         178 --PSNR-VPARIASFNDN-FTATYTEDIKLPCLTVGVPAPEIIW------------------------------KTYHIR  223 (543)
Q Consensus       178 --pi~~-~~~~~v~~~~~-~~~~~~~~~~~~~~~~g~p~p~~~w------------------------------~~y~~~  223 (543)
                        .+.. =|..+|+.... -...-.....+.|...+.|.|.|.|                              +.|.|+
T Consensus       411 t~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YT  490 (1281)
T KOG4222|consen  411 TDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYT  490 (1281)
T ss_pred             EeeeccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCccee
Confidence              0000 01112221110 0011112223666667789999999                              356899


Q ss_pred             EEEEcCCCCCCCCccEEEeccC-----------CCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcC
Q psy3718         224 IVAENEIGSSEPSDTVTILTAE-----------EAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETS  292 (543)
Q Consensus       224 v~a~n~~G~~~~s~~~~~~t~~-----------~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~  292 (543)
                      |.|.+..|++.+++.+.+....           ...+++|..-.+..+..+++.++|.+....+ ..++..|.++|...+
T Consensus       491 c~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg-~vP~s~yiieafs~~  569 (1281)
T KOG4222|consen  491 CIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSG-AVPASGYIIEAFSPD  569 (1281)
T ss_pred             eeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCC-ccccchhHHHHhhhh
Confidence            9999999999998877654221           1223456566677888999999999987743 678889999886655


Q ss_pred             CCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCCCCccee-eeccCCCCCCCC------------CC
Q psy3718         293 TDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVK-QYTAEGTPEQPP------------QD  359 (543)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~~-~~t~~~~p~~~P------------~~  359 (543)
                      ..+.|....-     ....+.+.|.+|+|++.|.|.|+|.|..|.+.++.... ++|.+..+...-            ..
T Consensus       570 ~~etw~~ta~-----~v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l  644 (1281)
T KOG4222|consen  570 LGETWQTTAG-----RVKTTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNEL  644 (1281)
T ss_pred             hccccccccc-----ccccceeeecCcCccceeeeeeeccccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccc
Confidence            5444433222     22567899999999999999999999999876554332 333222111110            01


Q ss_pred             cE---EEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCc----ccCCCCCCc-------------------------
Q psy3718         360 NT---CTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT----WYGDPKTDI-------------------------  407 (543)
Q Consensus       360 ~~---~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~----~~~~~~~~~-------------------------  407 (543)
                      ++   ...+++.++.+.|..+.. .....|.+|+|.|+....    |........                         
T Consensus       645 ~~l~~~~~L~asslr~~w~~~kq-~~~~~i~g~~I~~r~~~~~~a~~s~~~v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~  723 (1281)
T KOG4222|consen  645 LRLSNPNVLNASSLRLGWTKDKQ-HGSQYIQGYRISYRSLGSQLAQWSNAGVTVPTPESVVVPNLKPGTNYEFFVRPFFP  723 (1281)
T ss_pred             eeeccccccchhheeeeeeeecc-cCcccccceEEEeccCccccccccccceeccCCcceeccccCCCccceeeccCccC
Confidence            11   224578899999997622 236789999999998653    322221111                         


Q ss_pred             --------------------------------------cceEEEEeeCCCCCCCCcceeEEEEEEeeCCCCCCCCCccce
Q psy3718         408 --------------------------------------CTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRN  449 (543)
Q Consensus       408 --------------------------------------~~~~~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~  449 (543)
                                                            .+++.|+|.+|+....||.+.+|.|..-....    .....+
T Consensus       724 ~~~s~~g~pS~sk~alt~e~~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~ng~~qg~ki~~~~~e~----tr~h~n  799 (1281)
T KOG4222|consen  724 HGYSIQGAPSNSKTALTLEEPPSAPPQGVQHVSKGSYNGTAGSVSWAPPPADVQNGILQGYKIECSGGEK----TRIHIN  799 (1281)
T ss_pred             CCcceecCCcccccccccccCCCCCCCCccccccccCCCceeeEEecCCcccccCCcccceeEEeecCcc----cccccc
Confidence                                                  48899999999889999999999998654331    111111


Q ss_pred             eeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcccc
Q psy3718         450 HCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKND  502 (543)
Q Consensus       450 ~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~  502 (543)
                      ...........+-+|.++ .|.|+|.|              .|.+|.|..++..
T Consensus       800 ~t~~a~~~sv~i~~l~~g~ay~vtv~a--------------~T~aGvG~~s~p~  839 (1281)
T KOG4222|consen  800 KTTNARTGSVTIGNLVTGIAYSVTVAA--------------RTGAGVGVKSPPQ  839 (1281)
T ss_pred             ccccCCCCceEeccccccceEEEEEee--------------ecCCccCCCCCCe
Confidence            111133344555599999 99999999              9999999865433

>KOG4222|consensus

Probab=99.92  E-value=4.2e-24  Score=215.57  Aligned_cols=365  Identities=23%  Similarity=0.340  Sum_probs=256.1

Q ss_pred             CeEEec-CceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCCeEEeecceeEeecCCCeEEEEEeeccCCceEEE
Q psy3718          12 PRILLG-RVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILW   85 (543)
Q Consensus        12 ~~~~~~-~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W   85 (543)
                      ++.++. +-+|.|.+    |.|.|.|.|.|.+|.. +++.|+|+.||.|..+|.+..+-.|..++|.|.+.|.|.|.+.|
T Consensus       270 ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW  349 (1281)
T KOG4222|consen  270 RYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFW  349 (1281)
T ss_pred             ceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceEE
Confidence            344444 48999999    9999999999999986 88999999999999999999999999999999999999999999


Q ss_pred             ccCCeec------CCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee------------e------
Q psy3718          86 NMNNKRL------DPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ------------Q------  141 (543)
Q Consensus        86 ~~~~~~i------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~------------~------  141 (543)
                      .+.|...      .+..+.+..+.    ..|   +|+|.+++.+|.|.|.|...+..++..            +      
T Consensus       350 ~keg~q~llf~~~p~~~~~r~svs----~~g---~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~  422 (1281)
T KOG4222|consen  350 LKEGSQDLLFSASPPSSNGRGSVS----PTG---TLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPI  422 (1281)
T ss_pred             eccCcceecccCCCCCcCccceec----CCC---CcccccccccccceEeecccccccccccceeEEEEeeeccCCCCce
Confidence            9987532      11233444443    233   799999999999999999877754411            0      


Q ss_pred             ---------------------------------------------------eeeecccccccceEEEEEEEecccCCCCC
Q psy3718         142 ---------------------------------------------------MTYEASGLKKKQNYIFYVTASTNIGEGQP  170 (543)
Q Consensus       142 ---------------------------------------------------~~~~v~~l~~~~~y~~~v~a~~~~g~~~~  170 (543)
                                                                         -..++..+.-...+.+...+....|+...
T Consensus       423 i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~w  502 (1281)
T KOG4222|consen  423 IEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTW  502 (1281)
T ss_pred             eeecccccccccCcccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCccccccc
Confidence                                                               01111222222344444555555555554


Q ss_pred             CCcEEee-----------------------------------------------ecCCCCcceeEe-ccCccccccccee
Q psy3718         171 SKNVTLS-----------------------------------------------PSNRVPARIASF-NDNFTATYTEDIK  202 (543)
Q Consensus       171 s~~~~~~-----------------------------------------------pi~~~~~~~v~~-~~~~~~~~~~~~~  202 (543)
                      +..+.+.                                               |+..|   ++++ ..+....|.....
T Consensus       503 Satl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~y---iieafs~~~~etw~~ta~  579 (1281)
T KOG4222|consen  503 SATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGY---IIEAFSPDLGETWQTTAG  579 (1281)
T ss_pred             ceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCccccchh---HHHHhhhhhccccccccc
Confidence            4444443                                               44444   5442 2333344444333


Q ss_pred             ccccc----c-ccCCCCccceEEEEEEEEEcCCCCCCCCccE-EEeccCCCCC-------------C--CCeeeEEEecC
Q psy3718         203 LPCLT----V-GVPAPEIIWKTYHIRIVAENEIGSSEPSDTV-TILTAEEAPS-------------G--PPTHIKVEATD  261 (543)
Q Consensus       203 ~~~~~----~-g~p~p~~~w~~y~~~v~a~n~~G~~~~s~~~-~~~t~~~~p~-------------~--~P~~~~~~~~~  261 (543)
                      .....    . ..|.     ..|.|.|+|.|..|.+.++... .+++.+..+.             +  .-+......+.
T Consensus       580 ~v~~t~~~I~gL~P~-----~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~  654 (1281)
T KOG4222|consen  580 RVKTTTYAIRGLKPN-----LSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLN  654 (1281)
T ss_pred             ccccceeeecCcCcc-----ceeeeeeeccccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccc
Confidence            22222    1 2788     9999999999999987766433 2333322110             0  00111223457


Q ss_pred             CCeEEEEeeCCCCCCCCcceeEEEEEEEEcCC-CCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCC---C
Q psy3718         262 QNTLKVSWSPPERDHWNGVIQGYYVGYKETST-DKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG---P  337 (543)
Q Consensus       262 ~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G---~  337 (543)
                      ++++.+.|......+ ...+.+|+|.|+..+. ...+....+.    ......+.+.+|+|++.|+|.+..+-..|   .
T Consensus       655 asslr~~w~~~kq~~-~~~i~g~~I~~r~~~~~~a~~s~~~v~----~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~  729 (1281)
T KOG4222|consen  655 ASSLRLGWTKDKQHG-SQYIQGYRISYRSLGSQLAQWSNAGVT----VPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQ  729 (1281)
T ss_pred             hhheeeeeeeecccC-cccccceEEEeccCcccccccccccee----ccCCcceeccccCCCccceeeccCccCCCccee
Confidence            889999999987654 5689999999998776 2233333332    34567889999999999999999998755   5


Q ss_pred             CCCCcceeeeccCCCCCCCCCCc---EEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeC
Q psy3718         338 GPMSEEVKQYTAEGTPEQPPQDN---TCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPS  396 (543)
Q Consensus       338 s~~s~~~~~~t~~~~p~~~P~~~---~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~  396 (543)
                      |.+++...+.|.+.+|..+|..+   ..-..+.++..|+|.+|+..-.++.+.+|.|.....
T Consensus       730 g~pS~sk~alt~e~~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~ng~~qg~ki~~~~~  791 (1281)
T KOG4222|consen  730 GAPSNSKTALTLEEPPSAPPQGVQHVSKGSYNGTAGSVSWAPPPADVQNGILQGYKIECSGG  791 (1281)
T ss_pred             cCCcccccccccccCCCCCCCCccccccccCCCceeeEEecCCcccccCCcccceeEEeecC
Confidence            66788888999999999899985   333457789999999998888999999999987653

>KOG4194|consensus

Probab=99.79  E-value=8.2e-19  Score=166.62  Aligned_cols=116  Identities=17%  Similarity=0.310  Sum_probs=99.3

Q ss_pred             ceEEEec----CCeEEEEEEecCCCCCCC--ceEEEeCCCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCee-
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSFNGFP--PLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKR-   91 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g~~~s--~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~-   91 (543)
                      +.|.+.|    |+|.|+|+++|.+|+..+  +.|+|...|.|+..|.++....|+.+.|.|.+.|.|.|+|.|-|+|.+ 
T Consensus       574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtd  653 (873)
T KOG4194|consen  574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTD  653 (873)
T ss_pred             heeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCC
Confidence            5777888    999999999999999754  799999999999999999999999999999999999999999999876 


Q ss_pred             cCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718          92 LDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ  140 (543)
Q Consensus        92 i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~  140 (543)
                      ++.....|..+-    ++.  -.+-|.||+.+|+|.|+|.|+|.+|.++
T Consensus       654 FPAA~eRRl~Vm----ped--d~f~Itnvk~eD~GiYtC~A~n~AG~is  696 (873)
T KOG4194|consen  654 FPAARERRLHVM----PED--DVFFITNVKIEDQGIYTCTAQNVAGQIS  696 (873)
T ss_pred             Cchhhhheeeec----CCC--CEEEEecccccccceeEEeeecccccee
Confidence            544444444432    232  2688999999999999999999988854

>KOG0196|consensus

Probab=99.71  E-value=7.1e-16  Score=151.68  Aligned_cols=190  Identities=22%  Similarity=0.233  Sum_probs=135.5

Q ss_pred             CCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCC--Cce---EEEEeeeccCCceeEEEECCCCC
Q psy3718         247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDK--PFL---FETVDFSKEEGKEHHLTLSSLKT  321 (543)
Q Consensus       247 ~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~i~~L~p  321 (543)
                      .||++|+++... ++.+++.|.|.+|.+.+.. .-..|.|.++.-....  ...   ...+...+..-.+.+..+.+|.|
T Consensus       330 ~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR-~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~a  407 (996)
T KOG0196|consen  330 RPPSAPRNLISN-VNGTSLILEWSPPADTGGR-EDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLA  407 (996)
T ss_pred             CCCCccceeeee-cccceEEEEecCCcccCCC-cceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEecccc
Confidence            467799998666 8899999999999987644 4457888776654221  110   11122222233567899999999


Q ss_pred             CCEEEEEEEEEeCCC-CC---CCCcceeeeccCCCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCC
Q psy3718         322 YTQYSVVVQALNKLG-PG---PMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD  397 (543)
Q Consensus       322 ~t~Y~~~V~a~n~~G-~s---~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~  397 (543)
                      .+.|+|.|.|+|+.. .+   +....+.++|.+..|+ +...++....+.+++.|+|..|                    
T Consensus       408 h~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps-~V~~~r~~~~~~~sitlsW~~p--------------------  466 (996)
T KOG0196|consen  408 HTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPS-PVSVLRQVSRTSDSITLSWSEP--------------------  466 (996)
T ss_pred             ccccEEEEEEeecccccCCCCCcceeEEeeccccCCC-ccceEEEeeeccCceEEecCCC--------------------
Confidence            999999999999864 22   2344577888887776 4456888888888888888877                    


Q ss_pred             cccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeC
Q psy3718         398 TWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRG  476 (543)
Q Consensus       398 ~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~  476 (543)
                                             ..+||.|..|.|+|.+.+.+......+.     ...+..++.+|+|+ .|.|+|+| 
T Consensus       467 -----------------------~~png~ildYEvky~ek~~~e~~~~~~~-----t~~~~~ti~gL~p~t~YvfqVRa-  517 (996)
T KOG0196|consen  467 -----------------------DQPNGVILDYEVKYYEKDEDERSYSTLK-----TKTTTATITGLKPGTVYVFQVRA-  517 (996)
T ss_pred             -----------------------CCCCCcceeEEEEEeeccccccceeEEe-----cccceEEeeccCCCcEEEEEEEE-
Confidence                                   5557777777777777654322333333     55666777899999 99999999 


Q ss_pred             CCCCCCCCCccccccccccCCCccc
Q psy3718         477 GPPPCPGSDETLYSRHRGESDKCKN  501 (543)
Q Consensus       477 ~~~~~~~~~~~~~~~~~G~g~~~~~  501 (543)
                                   ++.+|.|..|..
T Consensus       518 -------------rT~aG~G~~S~~  529 (996)
T KOG0196|consen  518 -------------RTAAGYGPYSGK  529 (996)
T ss_pred             -------------ecccCCCCCCCc
Confidence                         999999988643

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.66  E-value=8.7e-16  Score=136.52  Aligned_cols=104  Identities=22%  Similarity=0.250  Sum_probs=81.7

Q ss_pred             CceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCCeEEeecceeEeecCCCeEEEEEeec-----cCCceEEEcc
Q psy3718          18 RVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKG-----EKPIGILWNM   87 (543)
Q Consensus        18 ~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g-----~p~~~i~W~~   87 (543)
                      +++|.|.+    |+|.|+|.|+|..|.. .+..|.|..++      .+..+.+|+++.|.|.+.+     .|.|++.|+|
T Consensus        97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyK  170 (227)
T PHA02826         97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYK  170 (227)
T ss_pred             CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEE
Confidence            56999999    9999999999987764 45677774332      3456789999999999863     3579999999


Q ss_pred             CCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718          88 NNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        88 ~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      |+.+|...  .++.+..    +  .+.|.|.+++.+|+|.|+|.|+..
T Consensus       171 ng~~l~~~--~r~~~~~----~--~~~L~I~~V~~~DsG~YtC~a~~~  210 (227)
T PHA02826        171 NGNIVLYT--DRIQLRN----N--NSTLVIKSATHDDSGIYTCNLRFN  210 (227)
T ss_pred             CCEECCCC--CCEEEeC----C--CCEEEECcCCHHhCEEEEEEEEEe
Confidence            99998633  3454431    1  147999999999999999999985

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.64  E-value=4.5e-15  Score=141.10  Aligned_cols=136  Identities=15%  Similarity=0.217  Sum_probs=97.5

Q ss_pred             ccEEEeecC---CCe-EEecCceEEEec----CCeEEEEEEecCCCCC-CC----ceEEEe---CCCeEEeecceeEeec
Q psy3718           2 ENFFFYRGF---NPR-ILLGRVLLPIGE----SSFHFDPELLNPSFNG-FP----PLLLSS---APPEFEIKLRNQTSRR   65 (543)
Q Consensus         2 ~~~~~~~~~---~~~-~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s----~~l~v~---~~p~~~~~~~~~~v~~   65 (543)
                      ++++|++..   +.+ ....++.|.|.+    |+|.|+|.|.|..|.. ..    +.|.|.   .||.+ ..|..+.+..
T Consensus       156 ~~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~  234 (326)
T PHA02785        156 ADIIWSGHRRLRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSI  234 (326)
T ss_pred             ceEEEccCCccCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecC
Confidence            467887632   223 335578999999    9999999999998864 22    346664   35554 4567888889


Q ss_pred             CCCeEEEEEeeccCC---ceEEEccCCeecCCCCC---CceEEeeeecC-C---CceeeEEEEeeecCCCccEEEEEecc
Q psy3718          66 GEPSVLQCEAKGEKP---IGILWNMNNKRLDPKSD---NRYTIREEILP-N---GVLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        66 g~~~~l~C~~~g~p~---~~i~W~~~~~~i~~~~~---~~~~~~~~~~~-~---~~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      |+.++|.|.+.|.|.   +.+.|++||.+|...+.   .++.+...... +   .....|.|.+++.+|+|.|+|.|.|.
T Consensus       235 G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~  314 (326)
T PHA02785        235 GSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTI  314 (326)
T ss_pred             CCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEec
Confidence            999999999999886   48999999998854321   23333221100 1   12357999999999999999999997


Q ss_pred             cce
Q psy3718         136 KIS  138 (543)
Q Consensus       136 ~~s  138 (543)
                      .+.
T Consensus       315 ~~~  317 (326)
T PHA02785        315 PSI  317 (326)
T ss_pred             cCc
Confidence            643

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.63  E-value=4.6e-15  Score=141.06  Aligned_cols=127  Identities=13%  Similarity=0.171  Sum_probs=93.7

Q ss_pred             ccEEEeecCC---CeEEecCce-EEEec----CCeEEEEEEecCCCCC-CCceEEEe--CCCeEEeecceeEeecCCCeE
Q psy3718           2 ENFFFYRGFN---PRILLGRVL-LPIGE----SSFHFDPELLNPSFNG-FPPLLLSS--APPEFEIKLRNQTSRRGEPSV   70 (543)
Q Consensus         2 ~~~~~~~~~~---~~~~~~~g~-L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~--~~p~~~~~~~~~~v~~g~~~~   70 (543)
                      +++.|+|...   +.....+|+ |.|.+    |+|.|+|.|.|..|.. .++.|+|.  .+|.+...+....+.+|+.+.
T Consensus        61 ~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~  140 (326)
T PHA02785         61 LDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIVNERSTGE  140 (326)
T ss_pred             ceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEecCCCccceeeccceecccCcEE
Confidence            5689998643   244455664 88888    9999999999998865 56777773  345555445566778999999


Q ss_pred             EEEE-----eeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718          71 LQCE-----AKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS  139 (543)
Q Consensus        71 l~C~-----~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv  139 (543)
                      |.|.     ..+.|.+++.|+++.. +   .+.++...    .+   +.|.|.+++.+|+|.|+|.|.|..+..
T Consensus       141 i~C~~~~~~~~~~~~~~i~W~k~~~-~---~~~r~~~~----~~---~~L~i~~v~~~d~G~Y~C~~~n~~g~~  203 (326)
T PHA02785        141 MVCPNINAFIASNVNADIIWSGHRR-L---RNKRLKQR----TP---GIITIEDVRKNDAGYYTCVLKYIYGDK  203 (326)
T ss_pred             EECCChhhcccCCCCceEEEccCCc-c---CCcceEec----CC---CeEEEeecChhhCeEEEEEEEeccCCE
Confidence            9997     3467889999998642 2   23344432    12   379999999999999999999986654

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.62  E-value=2.3e-15  Score=115.83  Aligned_cols=91  Identities=21%  Similarity=0.312  Sum_probs=74.6

Q ss_pred             CeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEE
Q psy3718          52 PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCE  131 (543)
Q Consensus        52 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~  131 (543)
                      |.|+..|+++.+..|+++.|.|.+.|.|.+.+.|+|||.+|..  +.++.+..    ....+.|.|.++..+|+|.|+|.
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~--~~~~~~~~----~~~~s~L~I~~~~~~D~G~Ytc~   74 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQE--GEGIKIEN----TENSSKLTITEGQQEHCGCYTLE   74 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecC--CCcEEEEe----cCCeeEEEECCCChhhCEEEEEE
Confidence            6788899999999999999999999999999999999999963  33555432    23346899999999999999999


Q ss_pred             Eecccceeeeeeeecccc
Q psy3718         132 IKSQKISSQQMTYEASGL  149 (543)
Q Consensus       132 a~n~~~sv~~~~~~v~~l  149 (543)
                      |.|..|... ....|.++
T Consensus        75 a~N~~G~~~-~~~~l~V~   91 (98)
T cd05762          75 VENKLGSRQ-AQVNLTVV   91 (98)
T ss_pred             EEcCCCcee-EEEEEEEe
Confidence            999998854 34444443

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.60  E-value=3.7e-15  Score=112.40  Aligned_cols=79  Identities=19%  Similarity=0.365  Sum_probs=67.9

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC  130 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  130 (543)
                      ||.|...+.++.+.+|+.+.|.|.+.|.|.|.+.|+|++.++..  ..++.+     .+   ..|.|.+++.+|+|.|+|
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~--~~~~~~-----~~---~~L~I~~v~~~D~G~Y~C   70 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPA--TAEISM-----SG---AVLKIFNIQPEDEGTYEC   70 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCC--CCEEec-----CC---CEEEECcCChhhCEEEEE
Confidence            68999999999999999999999999999999999999988753  223322     11   379999999999999999


Q ss_pred             EEeccccee
Q psy3718         131 EIKSQKISS  139 (543)
Q Consensus       131 ~a~n~~~sv  139 (543)
                      .|.|..|+.
T Consensus        71 ~A~N~~G~~   79 (88)
T cd05851          71 EAENIKGKD   79 (88)
T ss_pred             EEEcCCCce
Confidence            999998875

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.56  E-value=1.7e-14  Score=110.25  Aligned_cols=84  Identities=19%  Similarity=0.330  Sum_probs=71.6

Q ss_pred             CCCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718          50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFT  129 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~  129 (543)
                      .||.|...|+++.+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..  +.++.+..    .+..+.|.|.++..+|+|.|+
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~--~~~~~~~~----~~~~~~L~i~~~~~~D~G~Y~   75 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVS--SQRHQITS----TEYKSTFEISKVQMSDEGNYT   75 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCC--CCcEEEEE----cCCeeEEEECCCCcccCEeEE
Confidence            479999999999999999999999999999999999999998753  33454432    223468999999999999999


Q ss_pred             EEEeccccee
Q psy3718         130 CEIKSQKISS  139 (543)
Q Consensus       130 C~a~n~~~sv  139 (543)
                      |.|+|..|+.
T Consensus        76 C~a~N~~G~~   85 (92)
T cd05747          76 VVVENSEGKQ   85 (92)
T ss_pred             EEEEcCCCCE
Confidence            9999998874

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.55  E-value=3.5e-14  Score=108.45  Aligned_cols=85  Identities=24%  Similarity=0.355  Sum_probs=67.5

Q ss_pred             CCeEEeecceeEee---cCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeee-cCCCc
Q psy3718          51 PPEFEIKLRNQTSR---RGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTE-RGDSA  126 (543)
Q Consensus        51 ~p~~~~~~~~~~v~---~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G  126 (543)
                      .|.|+..|.++.+.   .|++++|.|.+.|.|.|++.|+|||.++......++.+.     +   +.|.|.++. .+|+|
T Consensus         1 ~P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~-----~---g~L~i~~~~~~~D~G   72 (94)
T cd05848           1 GPVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLI-----D---GNLIISNPSEVKDSG   72 (94)
T ss_pred             CCeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEee-----C---CeEEEccCCccCcCE
Confidence            37888889887665   478999999999999999999999999864443344332     2   368999875 69999


Q ss_pred             cEEEEEecccceeeeee
Q psy3718         127 LFTCEIKSQKISSQQMT  143 (543)
Q Consensus       127 ~Y~C~a~n~~~sv~~~~  143 (543)
                      .|+|.|+|..|++.+..
T Consensus        73 ~Y~C~A~N~~G~~~S~~   89 (94)
T cd05848          73 RYQCLATNSIGSILSRE   89 (94)
T ss_pred             EEEEEEEcCCCeEEecc
Confidence            99999999999865443

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.54  E-value=6e-14  Score=107.26  Aligned_cols=87  Identities=22%  Similarity=0.373  Sum_probs=69.5

Q ss_pred             CCeEEeecceeEeecC---CCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeee-cCCCc
Q psy3718          51 PPEFEIKLRNQTSRRG---EPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTE-RGDSA  126 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g---~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G  126 (543)
                      .|.|...|+++.+.+|   ++++|.|.+.|.|.|++.|+++|.++......++.+.     +   ++|.|.++. .+|+|
T Consensus         1 ~P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~-----~---g~L~I~~~~~~~D~G   72 (94)
T cd05850           1 GPVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV-----A---GNLVINNPQKARDAG   72 (94)
T ss_pred             CCeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE-----C---CeEEEccCCccCcCE
Confidence            4788889999877666   5799999999999999999999999865444455442     2   369998865 69999


Q ss_pred             cEEEEEecccceeeeeeee
Q psy3718         127 LFTCEIKSQKISSQQMTYE  145 (543)
Q Consensus       127 ~Y~C~a~n~~~sv~~~~~~  145 (543)
                      .|+|.|+|..|++.+....
T Consensus        73 ~Y~C~A~N~~G~~~s~~a~   91 (94)
T cd05850          73 SYQCLAINRCGTVVSREAN   91 (94)
T ss_pred             EEEEEEEcCcCcEEEEEEE
Confidence            9999999999987654443

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.52  E-value=9.2e-14  Score=104.83  Aligned_cols=86  Identities=26%  Similarity=0.425  Sum_probs=69.8

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEcc-CCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEE
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNM-NNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEI  132 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a  132 (543)
                      +.+.|.++.+.+|+++.|.|.+.|.|. .+.|++ ++.++.  ...++.+.    .++....|.|.++..+|+|.|+|.|
T Consensus         3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~--~~~r~~~~----~~g~~~~L~I~~v~~~D~G~Y~C~A   75 (92)
T cd05866           3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIV--SSQRVVVQ----KEGVRSRLTIYNANIEDAGIYRCQA   75 (92)
T ss_pred             EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEec--CCCCEEEE----eCCCeeEEEEecCChHHCEEEEEEE
Confidence            456788999999999999999999998 999997 466664  33455543    2444568999999999999999999


Q ss_pred             ecccceeeeeeeec
Q psy3718         133 KSQKISSQQMTYEA  146 (543)
Q Consensus       133 ~n~~~sv~~~~~~v  146 (543)
                      +|..|.++...+.+
T Consensus        76 ~N~~G~~~~~~i~l   89 (92)
T cd05866          76 TDAKGQTQEATVVL   89 (92)
T ss_pred             EcCCCcEEEEEEEE
Confidence            99999877666554

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.50  E-value=1.5e-13  Score=106.25  Aligned_cols=89  Identities=27%  Similarity=0.463  Sum_probs=72.8

Q ss_pred             CCCeEEeecceeEeecCCCeEEEEEeeccCCc-eEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC-Ccc
Q psy3718          50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPI-GILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD-SAL  127 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D-~G~  127 (543)
                      .||.|.. +....+..|+++.|.|.+.|.|.| .+.|++++.++...++.++.+.......+..+.|.|.++..+| .|.
T Consensus         1 ~pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~   79 (98)
T cd05758           1 GPPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTS   79 (98)
T ss_pred             CCCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCcccccccee
Confidence            3677754 567788999999999999999998 6999999999876555678776543344556789999999955 899


Q ss_pred             EEEEEeccccee
Q psy3718         128 FTCEIKSQKISS  139 (543)
Q Consensus       128 Y~C~a~n~~~sv  139 (543)
                      |+|.|.|..|..
T Consensus        80 Y~C~A~N~~G~~   91 (98)
T cd05758          80 YNCTAWNSFGSG   91 (98)
T ss_pred             EEEEEEcCCCcc
Confidence            999999998874

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.50  E-value=1.7e-13  Score=104.58  Aligned_cols=82  Identities=22%  Similarity=0.431  Sum_probs=64.1

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCC-ceEEEcc-CCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEE
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNM-NNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCE  131 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~  131 (543)
                      +.+.|.+..+..|++++|.|.+.|.|. |.+.|++ ++.++.. ...++.+..   .++..+.|.|.+++.+|+|.|+|.
T Consensus         3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~-~~~r~~v~~---~~~~~~~L~I~~v~~~D~G~YtC~   78 (96)
T cd05865           3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTP-NQQRISVVR---NDDYSSTLTIYNANIDDAGIYKCV   78 (96)
T ss_pred             EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccc-cCCeEEEEe---CCCCceEEEEeccChhhCEEEEEE
Confidence            345678888999999999999999995 7999998 7877643 233444431   233456899999999999999999


Q ss_pred             Eeccc-cee
Q psy3718         132 IKSQK-ISS  139 (543)
Q Consensus       132 a~n~~-~sv  139 (543)
                      |+|.. |++
T Consensus        79 A~N~~~g~~   87 (96)
T cd05865          79 VSNEDEGES   87 (96)
T ss_pred             EEcCCCCcE
Confidence            99986 553

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.50  E-value=1.6e-13  Score=102.77  Aligned_cols=75  Identities=19%  Similarity=0.297  Sum_probs=62.9

Q ss_pred             eeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS  139 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv  139 (543)
                      .+.+.+|+++.|.|.+.|.|.|.+.|+|++.++... ..++.+..    ....+.|.|.++..+|+|.|+|.|.|..|+.
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~-~~r~~~~~----~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~   78 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTET-EGRVRVES----YKDLSSFVIEGAEREDEGVYTITVTNPVGED   78 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccC-CCeEEEEE----cCCeEEEEECCCccCcCEEEEEEEEeCCCcE
Confidence            467899999999999999999999999999998643 33555532    2234689999999999999999999998874

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.50  E-value=9.3e-14  Score=106.05  Aligned_cols=78  Identities=21%  Similarity=0.310  Sum_probs=63.8

Q ss_pred             ecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccc
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQK  136 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  136 (543)
                      -|..+.+.+|+++.|.|.+.|.|.|++.|+|++.++...  .++.+..   ..+....|.|.++..+|+|.|+|.|.|..
T Consensus         7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~--~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   81 (92)
T cd05737           7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALS--DHYNVKV---EQGKYASLTIKGVSSEDSGKYGIVVKNKY   81 (92)
T ss_pred             CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccC--CCEEEEE---cCCCEEEEEEccCChhhCEEEEEEEEECC
Confidence            356688999999999999999999999999999998643  3444331   12334679999999999999999999988


Q ss_pred             cee
Q psy3718         137 ISS  139 (543)
Q Consensus       137 ~sv  139 (543)
                      |+.
T Consensus        82 G~~   84 (92)
T cd05737          82 GGE   84 (92)
T ss_pred             Ccc
Confidence            874

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.50  E-value=1.7e-13  Score=107.17  Aligned_cols=95  Identities=22%  Similarity=0.417  Sum_probs=68.8

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEe--eecCCCccE
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKR--TERGDSALF  128 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~--~~~~D~G~Y  128 (543)
                      ||.|...|.++.+.+|+++.|.|.+.|.|.|.+.|+|+|..+........ .......++....+.+..  +..+|+|.|
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y   79 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPR-SHRIVLPSGSLFFLRVVHGRKGRSDEGVY   79 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCC-cceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence            68999999999999999999999999999999999999999865211100 011112344333333332  368999999


Q ss_pred             EEEEecccceeeeeeeec
Q psy3718         129 TCEIKSQKISSQQMTYEA  146 (543)
Q Consensus       129 ~C~a~n~~~sv~~~~~~v  146 (543)
                      +|.|+|..|+.......|
T Consensus        80 ~C~a~N~~G~~~s~~~~l   97 (100)
T cd07693          80 VCVAHNSLGEAVSRNASL   97 (100)
T ss_pred             EEEEEccccceecceEEE
Confidence            999999988855444443

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.49  E-value=1.4e-13  Score=104.69  Aligned_cols=85  Identities=18%  Similarity=0.297  Sum_probs=67.4

Q ss_pred             CCeEEeecceeEeecCC---CeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeee-cCCCc
Q psy3718          51 PPEFEIKLRNQTSRRGE---PSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTE-RGDSA  126 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~---~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G  126 (543)
                      +|.|...|.++.+.++.   .+.|.|.+.|.|.|++.|+|++.++... ..++.+.     +   +.|.|.++. .+|+|
T Consensus         1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~-~~~~~~~-----~---g~L~I~~~~~~~D~G   71 (93)
T cd05849           1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLT-NDRYSMV-----G---GNLVINNPDKYKDAG   71 (93)
T ss_pred             CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCC-CCeEEEE-----C---CEEEECcCCcCCCCE
Confidence            48888889887766544   8999999999999999999999988532 3344432     2   379999885 69999


Q ss_pred             cEEEEEecccceeeeeee
Q psy3718         127 LFTCEIKSQKISSQQMTY  144 (543)
Q Consensus       127 ~Y~C~a~n~~~sv~~~~~  144 (543)
                      .|+|.|+|..|++.....
T Consensus        72 ~Y~C~A~N~~G~~~s~~a   89 (93)
T cd05849          72 RYVCIVSNIYGKVRSREA   89 (93)
T ss_pred             EEEEEEEeCcceEEEccE
Confidence            999999999998755443

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>KOG4194|consensus

Probab=99.49  E-value=1.2e-13  Score=131.93  Aligned_cols=114  Identities=21%  Similarity=0.218  Sum_probs=98.6

Q ss_pred             cCceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCCeEEeecceeEeecCCCeEEEEEeeccCC-ceEEEccCCe
Q psy3718          17 GRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNMNNK   90 (543)
Q Consensus        17 ~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~~~~   90 (543)
                      .++...|.|    |+|.|+|.|.|.+|.. ++|.|.|..-|.|.++.+++.|..|+++.|.|.+.|.|. |.+.|+|+++
T Consensus       667 edd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~  746 (873)
T KOG4194|consen  667 EDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDK  746 (873)
T ss_pred             CCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCC
Confidence            466888888    9999999999999986 889999999999999999999999999999999999988 9999999999


Q ss_pred             ecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccce
Q psy3718          91 RLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS  138 (543)
Q Consensus        91 ~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s  138 (543)
                      +|.....+.+.-        ...-|.+.+...+|+|+|+|...|..|.
T Consensus       747 pil~t~rh~f~d--------~dQllvv~~~~~~daG~yTcem~~~~~~  786 (873)
T KOG4194|consen  747 PILITERHTFPD--------GDQLLVVKENLVEDAGIYTCEMSNTLGT  786 (873)
T ss_pred             ceEEeecccCCC--------CCeEEEEEehhhhhcceEEEEEEeeccc
Confidence            986544333321        1135888899999999999999997665

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.48  E-value=3e-13  Score=104.06  Aligned_cols=80  Identities=20%  Similarity=0.238  Sum_probs=61.3

Q ss_pred             ceeEeecCCCeEEEEEeec-cCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccc
Q psy3718          59 RNQTSRRGEPSVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKI  137 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g-~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  137 (543)
                      .++.+.+|+++.|.|.+.| .|+|.+.|+|||.+|... ...+............+.|.|..+..+|+|.|+|.|+|..|
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G   89 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNK-LTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA   89 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCC-cceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence            4688999999999999999 899999999999999632 22222111000111246899999999999999999999988


Q ss_pred             ee
Q psy3718         138 SS  139 (543)
Q Consensus       138 sv  139 (543)
                      +.
T Consensus        90 ~~   91 (101)
T cd04975          90 SK   91 (101)
T ss_pred             cE
Confidence            74

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.48  E-value=2.2e-13  Score=104.09  Aligned_cols=82  Identities=32%  Similarity=0.592  Sum_probs=71.5

Q ss_pred             CeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEE
Q psy3718          52 PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCE  131 (543)
Q Consensus        52 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~  131 (543)
                      |+|...|.++.+.+|+++.|.|.+.|.|.+++.|++++.++..  +.++.+...    +..+.|.|.++..+|+|.|+|.
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~--~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~   74 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS--SQRYQIESD----GGSSSLTIKNVTREDAGTYTCV   74 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES--SSSEEEEEE----TTEEEEEESSESGGGSEEEEEE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceee--eeeeeeecc----cceeEEccCCCChhhCEEEEEE
Confidence            7899999999999999999999999999999999999999974  445555432    2557999999999999999999


Q ss_pred             Eeccccee
Q psy3718         132 IKSQKISS  139 (543)
Q Consensus       132 a~n~~~sv  139 (543)
                      |.|..|..
T Consensus        75 ~~n~~g~~   82 (90)
T PF07679_consen   75 ASNSSGEA   82 (90)
T ss_dssp             EEETTEEE
T ss_pred             EEECCCEE
Confidence            99987774

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.48  E-value=1.4e-13  Score=103.23  Aligned_cols=77  Identities=19%  Similarity=0.379  Sum_probs=65.7

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEe
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIK  133 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  133 (543)
                      |...|.++.+..|+++.|.|.+.|.|.|.+.|+|++.++..  ..++.+.     +   ..|.|.++..+|+|.|+|.|.
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~--~~~~~~~-----~---~~L~i~~~~~~D~G~Y~C~a~   71 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLAS--ENRIEVE-----A---GDLRITKLSLSDSGMYQCVAE   71 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCC--CCeEEEe-----C---CEEEEeeCCHHHCEEEEEEEE
Confidence            56678999999999999999999999999999999999853  3344432     2   379999999999999999999


Q ss_pred             cccceee
Q psy3718         134 SQKISSQ  140 (543)
Q Consensus       134 n~~~sv~  140 (543)
                      |..|.+.
T Consensus        72 N~~G~~~   78 (85)
T cd05728          72 NKHGTIY   78 (85)
T ss_pred             CCCCeEE
Confidence            9988853

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.48  E-value=1.5e-13  Score=99.41  Aligned_cols=68  Identities=21%  Similarity=0.368  Sum_probs=55.3

Q ss_pred             eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718          69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ  140 (543)
Q Consensus        69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~  140 (543)
                      +.|.|.+.|.|.|.|.|+|++.+|... ..++.+...   ++...+|.|.++..+|+|.|+|.|.|..|++.
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~-~~r~~~~~~---~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~   68 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYN-TDRISLYQD---NSGRVTLLIKNVNKKDAGWYTVSAVNEAGVAT   68 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCC-CCeEEEEEc---CCCcEEEEECCCChhhCEEEEEEEEcCcCeEE
Confidence            579999999999999999999998643 346665422   22235799999999999999999999988864

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.47  E-value=3.3e-13  Score=103.87  Aligned_cols=86  Identities=31%  Similarity=0.482  Sum_probs=67.6

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEee-----ecCCCccE
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRT-----ERGDSALF  128 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~-----~~~D~G~Y  128 (543)
                      |...|.+..+.+|+++.|.|.+.|.|.|++.|+|||..+......++.+    ..++   .|.|.++     ..+|+|.|
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~----~~~~---~l~i~~v~~~~~~~~D~G~Y   74 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQ----LPNG---SLLITSVVHSKHNKPDEGFY   74 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEE----ccCC---eEEEeeeeccCCCCCcCEEE
Confidence            5677888999999999999999999999999999999986543333332    2233   5777776     58999999


Q ss_pred             EEEEecc-cceeeeeeeec
Q psy3718         129 TCEIKSQ-KISSQQMTYEA  146 (543)
Q Consensus       129 ~C~a~n~-~~sv~~~~~~v  146 (543)
                      +|.|.|. .|.+.+.+..|
T Consensus        75 ~C~a~N~~~G~~~s~~~~l   93 (95)
T cd05722          75 QCVAQNDSLGSIVSRTARL   93 (95)
T ss_pred             EEEEECCccCcEEEeeeEE
Confidence            9999999 88876555544

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.47  E-value=3.3e-13  Score=101.61  Aligned_cols=74  Identities=30%  Similarity=0.583  Sum_probs=60.7

Q ss_pred             CCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718          66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ  140 (543)
Q Consensus        66 g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~  140 (543)
                      |+.++|.|.+.|.|++.+.|+|++.++... ..++.+.....+....++|.|.++..+|+|.|+|.|.|..|...
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~-~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~   74 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPE-MSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDR   74 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCC-CCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcce
Confidence            789999999999999999999999988643 34666543322344557899999999999999999999988853

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.47  E-value=1.1e-13  Score=99.86  Aligned_cols=66  Identities=18%  Similarity=0.384  Sum_probs=56.1

Q ss_pred             CCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718          66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ  140 (543)
Q Consensus        66 g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~  140 (543)
                      |+++.|.|.+.|.|.|++.|+|++.++.  .+.++.+.    .+   ++|.|.+++.+|+|.|+|.|.|..|++.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~--~~~r~~~~----~~---g~L~I~~v~~~D~G~Y~C~A~N~~G~~~   66 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLV--NNSRISIW----DD---GSLEILNITKLDEGSYTCFAENNRGKAN   66 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecc--cCCCEEEc----CC---CEEEECcCChhHCEEEEEEEECCCCcee
Confidence            7899999999999999999999998874  34566553    23   3799999999999999999999988854

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.47  E-value=5.7e-13  Score=102.84  Aligned_cols=86  Identities=19%  Similarity=0.363  Sum_probs=68.1

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCC---CCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKS---DNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      .|.|...+....+..|+.++|.|.+.|.|.|.+.|++++..+....   ..++.+.    .+...+.|.|.+++.+|+|.
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~----~~~~~~~L~I~~v~~~D~G~   77 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVR----SHARVSSLTLKYIQYTDAGE   77 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEE----cCccEEEEEEecCccCcCEE
Confidence            5778777777777779999999999999999999999988774321   2334433    22334689999999999999


Q ss_pred             EEEEEecccceee
Q psy3718         128 FTCEIKSQKISSQ  140 (543)
Q Consensus       128 Y~C~a~n~~~sv~  140 (543)
                      |+|.|.|..|...
T Consensus        78 Y~C~A~N~~G~~~   90 (97)
T cd05869          78 YLCTASNTIGQDS   90 (97)
T ss_pred             EEEEEecCCCCee
Confidence            9999999988753

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.46  E-value=4e-13  Score=103.90  Aligned_cols=85  Identities=27%  Similarity=0.416  Sum_probs=66.1

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccC--CeecCCC---CCCceEEeeeecCCCceeeEEEEeeecCCC
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRLDPK---SDNRYTIREEILPNGVLSDLSIKRTERGDS  125 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i~~~---~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~  125 (543)
                      +|.|.. +.++.+.+|++++|.|.+.|.|.|.+.|+|+  +..+...   .+.++.+..    ....+.|.|.+++.+|+
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~----~~~~~~L~I~~v~~~D~   76 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKG----QHGESSLHIKDVKLSDS   76 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEee----cCCeeEEEEeeCCcCCC
Confidence            677754 7889999999999999999999999999984  4444211   234555432    22335799999999999


Q ss_pred             ccEEEEEecccceee
Q psy3718         126 ALFTCEIKSQKISSQ  140 (543)
Q Consensus       126 G~Y~C~a~n~~~sv~  140 (543)
                      |.|+|.|.|..|+..
T Consensus        77 G~Y~C~A~N~~G~~~   91 (98)
T cd05870          77 GRYDCEAASRIGGHQ   91 (98)
T ss_pred             EEEEEEEeccCCcce
Confidence            999999999988753

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.46  E-value=4.2e-13  Score=105.50  Aligned_cols=91  Identities=23%  Similarity=0.275  Sum_probs=68.2

Q ss_pred             EeCCCeEEeecceeEe----ecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeee-c
Q psy3718          48 SSAPPEFEIKLRNQTS----RRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTE-R  122 (543)
Q Consensus        48 v~~~p~~~~~~~~~~v----~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~  122 (543)
                      |..+|.|...|....+    ..|.+++|.|.+.|.|.+.+.|+|||.+|... +.++.+..........+.|.|.++. .
T Consensus         1 v~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~-~~r~~~~~~~~~~~~~s~L~I~~v~~~   79 (109)
T cd05773           1 VRFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLG-NPRYEETTEHTGTVHTSILTIINVSAA   79 (109)
T ss_pred             CccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCC-CCeEEEEeeccCccceeEEEECcCCcc
Confidence            4568888887763222    35689999999999999999999999998543 3355443222222234689999997 6


Q ss_pred             CCCccEEEEEeccccee
Q psy3718         123 GDSALFTCEIKSQKISS  139 (543)
Q Consensus       123 ~D~G~Y~C~a~n~~~sv  139 (543)
                      +|.|.|+|.|.|..|+.
T Consensus        80 ~D~G~Y~C~A~N~~G~~   96 (109)
T cd05773          80 LDYALFTCTAHNSLGED   96 (109)
T ss_pred             CCCEEEEEEEEeCCccC
Confidence            99999999999998885

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.46  E-value=3.1e-13  Score=99.24  Aligned_cols=75  Identities=21%  Similarity=0.330  Sum_probs=60.5

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCc-eEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEE
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPI-GILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEI  132 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a  132 (543)
                      |...|+++.+.+|+++.|.|.+.|.|.| +|.|+|||.++...    .        ....+.|.|.++  .|+|.|.|.|
T Consensus         1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~----~--------~~~~s~L~i~~~--~d~g~Y~C~A   66 (81)
T cd05749           1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP----P--------APSPSVLNVPGL--NETSKFSCEA   66 (81)
T ss_pred             CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC----C--------CCCCCEEEEccc--cCCeEEEEEE
Confidence            4567889999999999999999999999 79999999998531    1        111246888887  5889999999


Q ss_pred             ecccceeeee
Q psy3718         133 KSQKISSQQM  142 (543)
Q Consensus       133 ~n~~~sv~~~  142 (543)
                      +|..|.+...
T Consensus        67 ~N~~G~~~s~   76 (81)
T cd05749          67 HNAKGVTTSR   76 (81)
T ss_pred             EeccCcEEee
Confidence            9998876543

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.46  E-value=3.1e-13  Score=104.22  Aligned_cols=79  Identities=20%  Similarity=0.250  Sum_probs=60.8

Q ss_pred             eeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeee-ecCCCceeeEEEEeeecCCCccEEEEEecccce
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREE-ILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS  138 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s  138 (543)
                      ...+..|+.+.|.|.+.|.|+|++.|+|||.+|.... ..+..... .......+.|.|.++..+|+|.|+|.|.|..|+
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~-~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~   90 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENL-TEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV   90 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCc-ceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence            5788999999999999999999999999999986322 22211110 001122368999999999999999999999887


Q ss_pred             e
Q psy3718         139 S  139 (543)
Q Consensus       139 v  139 (543)
                      .
T Consensus        91 ~   91 (101)
T cd05859          91 K   91 (101)
T ss_pred             E
Confidence            4

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.44  E-value=2.8e-13  Score=98.72  Aligned_cols=67  Identities=22%  Similarity=0.362  Sum_probs=55.8

Q ss_pred             cCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718          65 RGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ  140 (543)
Q Consensus        65 ~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~  140 (543)
                      +|+++.|.|.+.|.|.|.+.|+|++.++...  .++.+.    .+   +.|.|.+++.+|+|.|+|.|.|..|++.
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~--~~~~~~----~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   67 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVD--RRHLVL----SS---GTLRISRVALHDQGQYECQAVNIVGSQR   67 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCC--CCeEEc----cC---CeEEEeeCCHHhCEEEEEEEEeCCCcee
Confidence            5899999999999999999999999988542  233321    22   3799999999999999999999988854

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.44  E-value=4.7e-13  Score=101.26  Aligned_cols=86  Identities=24%  Similarity=0.461  Sum_probs=68.2

Q ss_pred             CeEEe--ecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718          52 PEFEI--KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFT  129 (543)
Q Consensus        52 p~~~~--~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~  129 (543)
                      |.|..  .+.++.+.+|++++|.|.+.|. .|.+.|+|++.++..   .++.+.    .++  ..|.|.+++.+|+|.|.
T Consensus         2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~---~~~~~~----~~~--~~L~I~~v~~~D~G~Y~   71 (91)
T cd05740           2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP---PRLQLS----NDN--RTLTFNNVTRSDTGHYQ   71 (91)
T ss_pred             CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC---CCEEEe----CCC--CEEEECcCChhhCEEEE
Confidence            55643  3567899999999999999999 999999999998742   234332    111  37999999999999999


Q ss_pred             EEEecccceeeeeeeecc
Q psy3718         130 CEIKSQKISSQQMTYEAS  147 (543)
Q Consensus       130 C~a~n~~~sv~~~~~~v~  147 (543)
                      |.|.|..|++...++.|.
T Consensus        72 C~a~N~~G~~~S~~~~L~   89 (91)
T cd05740          72 CEASNEVSNMTSDPYILN   89 (91)
T ss_pred             EEEEcCCCCEEeeeEEEE
Confidence            999999998776666553

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.44  E-value=3.7e-13  Score=97.59  Aligned_cols=68  Identities=21%  Similarity=0.351  Sum_probs=55.3

Q ss_pred             eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718          69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ  140 (543)
Q Consensus        69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~  140 (543)
                      +.|.|.+.|.|.|.|.|+|++.++.. ...++.+...   +.....|.|.++.++|+|.|+|.|.|..|++.
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~-~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   68 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTH-NTDRVSMHQD---NCGYICLLIQGATKEDAGWYTVSAKNEAGIVS   68 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCC-CCCeEEEEEc---CCCEEEEEECCCCHHHCEEEEEEEEcCCCEEE
Confidence            57999999999999999999999853 3456665422   22234699999999999999999999999864

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.44  E-value=4e-13  Score=98.17  Aligned_cols=68  Identities=19%  Similarity=0.358  Sum_probs=54.6

Q ss_pred             CCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718          66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ  140 (543)
Q Consensus        66 g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~  140 (543)
                      |+++.|.|.+.|.|.|+|.|+|+|.++..........     .++  ..|.|.+++.+|+|.|+|.|+|..|.+.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~-----~~~--~~l~i~~v~~~D~G~Y~C~A~N~~G~~~   68 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRK-----VDG--DTIIFSKVQERSSAVYQCNASNEYGYLL   68 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEE-----ecC--CEEEECCCCHhhCEEEEEEEEcCCCEEE
Confidence            7899999999999999999999999985432221111     122  3689999999999999999999998864

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.43  E-value=1.2e-12  Score=99.19  Aligned_cols=89  Identities=26%  Similarity=0.419  Sum_probs=75.1

Q ss_pred             CCCeEEeecceeEeecCCCeEEEEEeeccCCc-eEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC-Ccc
Q psy3718          50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPI-GILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD-SAL  127 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D-~G~  127 (543)
                      .||.| .....+.+.+|+++.|.|.+.+.|+| .|.|.+++..|....+.+|.+.......+..+.|.|.++..+| .|.
T Consensus         1 gpP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~   79 (98)
T cd05898           1 GPPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTH   79 (98)
T ss_pred             CCCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcE
Confidence            36776 55677889999999999999887775 6788888888876667899998877788999999999998877 799


Q ss_pred             EEEEEeccccee
Q psy3718         128 FTCEIKSQKISS  139 (543)
Q Consensus       128 Y~C~a~n~~~sv  139 (543)
                      |.|.|.|..|+-
T Consensus        80 Y~C~a~N~~G~d   91 (98)
T cd05898          80 YNCTAWNSFGSG   91 (98)
T ss_pred             EEEEEEeCCccc
Confidence            999999998874

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.43  E-value=1.7e-12  Score=107.67  Aligned_cols=116  Identities=19%  Similarity=0.281  Sum_probs=81.1

Q ss_pred             eEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCCeEEeecceeEeecCCCeEEEEEeecc-CC-ceEEEccCCeec
Q psy3718          20 LLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGE-KP-IGILWNMNNKRL   92 (543)
Q Consensus        20 ~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i   92 (543)
                      +|+|.+    |+|.|.|.+.+..|.. ....|.|..+|.+...+.......|+.++|.|.+.|. |. +.|.|++++...
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~   81 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGD   81 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCC
Confidence            689999    9999999999987775 5579999999999888777666689999999999995 54 599999998652


Q ss_pred             CC--CCCCceEE-eeeecCCCc---eeeEEEEeeecCCCccEEEEEecc
Q psy3718          93 DP--KSDNRYTI-REEILPNGV---LSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        93 ~~--~~~~~~~~-~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      ..  ........ ......+|.   .+.|.|......+.+.|+|.+.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~  130 (139)
T cd05771          82 SPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHV  130 (139)
T ss_pred             ccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcC
Confidence            21  00011110 001112333   245666544444577999999885

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.43  E-value=8.4e-13  Score=100.35  Aligned_cols=81  Identities=11%  Similarity=0.147  Sum_probs=64.2

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEe
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIK  133 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  133 (543)
                      ++.+|.+..+..|+++.|.|.+.|.|.|.+.|++++..+..  ........    ......|.|.++..+|.|.|+|.|.
T Consensus         3 ~v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~--~~~~~~~~----~~~~~~L~I~~v~~~D~g~Y~C~A~   76 (90)
T cd04972           3 PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQ--TRTDTLET----TVDIYNLQLSNITSETQTTVTCTAE   76 (90)
T ss_pred             cccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccC--CccEEEEe----cCCEEEEEEecCCcccCEEEEEEEE
Confidence            34567778899999999999999999999999999998752  22222111    1223589999999999999999999


Q ss_pred             cccceee
Q psy3718         134 SQKISSQ  140 (543)
Q Consensus       134 n~~~sv~  140 (543)
                      |..|+..
T Consensus        77 N~~G~~~   83 (90)
T cd04972          77 NPVGQAN   83 (90)
T ss_pred             CCCCcee
Confidence            9988753

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.43  E-value=6e-13  Score=102.51  Aligned_cols=82  Identities=22%  Similarity=0.509  Sum_probs=65.6

Q ss_pred             CCeEEeec--ceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccE
Q psy3718          51 PPEFEIKL--RNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALF  128 (543)
Q Consensus        51 ~p~~~~~~--~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y  128 (543)
                      ||.|...+  .+..+..|+++.|.|.+.|.|.|.+.|+++|.++... ..++.+.    .++  +.|.|.++..+|+|.|
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~-~~~~~~~----~~~--~~L~I~~v~~~D~G~Y   73 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESG-EEKYSFN----EDG--SEMTILDVDKLDEAEY   73 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCC-CCEEEEe----CCC--CEEEECCCChhhCEEE
Confidence            56666544  4568899999999999999999999999999998643 2344332    122  4799999999999999


Q ss_pred             EEEEeccccee
Q psy3718         129 TCEIKSQKISS  139 (543)
Q Consensus       129 ~C~a~n~~~sv  139 (543)
                      +|.|.|..|..
T Consensus        74 ~C~a~N~~G~~   84 (95)
T cd05730          74 TCIAENKAGEQ   84 (95)
T ss_pred             EEEEEcCCCeE
Confidence            99999998874

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.43  E-value=6.2e-13  Score=100.71  Aligned_cols=79  Identities=18%  Similarity=0.316  Sum_probs=65.5

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC  130 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  130 (543)
                      ||.+...|.+..+.+|+++.|.|.+.|.|.|++.|+|++..+...  ..+..     .+   +.|.|.+++.+|+|.|+|
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~--~~~~~-----~~---~~L~i~~v~~~D~G~Y~C   70 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSS--AEISM-----SG---AVLKIPNIQFEDEGTYEC   70 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCc--cEEEE-----eC---CEEEECCCCcccCEEEEE
Confidence            567778899999999999999999999999999999988766432  12211     12   479999999999999999


Q ss_pred             EEeccccee
Q psy3718         131 EIKSQKISS  139 (543)
Q Consensus       131 ~a~n~~~sv  139 (543)
                      .|.|..|..
T Consensus        71 ~a~N~~G~~   79 (88)
T cd04968          71 EAENIKGKD   79 (88)
T ss_pred             EEEECCCcE
Confidence            999998874

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.42  E-value=1e-12  Score=99.35  Aligned_cols=80  Identities=18%  Similarity=0.368  Sum_probs=64.5

Q ss_pred             ecceeEeecCCCeEEEEEe-eccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718          57 KLRNQTSRRGEPSVLQCEA-KGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      .|.+..+.+|+++.|.|.+ .|.|.|.+.|+|++.++... ..++.+.    .+   +.|.|.++..+|+|.|+|.|.|.
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~-~~~~~~~----~~---~~L~I~~~~~~D~G~Y~C~a~N~   73 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLD-NERVRIV----DD---GNLLIAEARKSDEGTYKCVATNM   73 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCC-CCCEEEc----cC---CEEEEeECCcccCEEEEEEEEec
Confidence            4678889999999999998 78999999999999998653 3344432    12   37999999999999999999999


Q ss_pred             cceeeeeee
Q psy3718         136 KISSQQMTY  144 (543)
Q Consensus       136 ~~sv~~~~~  144 (543)
                      .|.......
T Consensus        74 ~G~~~s~~~   82 (86)
T cd05724          74 VGERESAAA   82 (86)
T ss_pred             cCceeeeeE
Confidence            887544433

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.42  E-value=1.4e-12  Score=100.85  Aligned_cols=85  Identities=27%  Similarity=0.452  Sum_probs=67.4

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCC---CCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKS---DNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      +|.|. .+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+....   +.++.+.    .+...+.|.|.+++.+|+|.
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~   76 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVR----GHARVSSLTLKDVQLTDAGR   76 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEe----CCccEEEEEECcCCcCcCEE
Confidence            57775 5678899999999999999999999999999987664321   2234432    23344689999999999999


Q ss_pred             EEEEEecccceee
Q psy3718         128 FTCEIKSQKISSQ  140 (543)
Q Consensus       128 Y~C~a~n~~~sv~  140 (543)
                      |+|.|.|..|...
T Consensus        77 Y~C~a~N~~G~~~   89 (96)
T cd05732          77 YDCEASNRIGGDQ   89 (96)
T ss_pred             eEEEEEeCCCCcE
Confidence            9999999988753

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.41  E-value=8.9e-13  Score=96.60  Aligned_cols=67  Identities=21%  Similarity=0.498  Sum_probs=55.5

Q ss_pred             CCCeEEEEEeeccCCceEEEccCCeecCCCCCC-ceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718          66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDN-RYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ  140 (543)
Q Consensus        66 g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~  140 (543)
                      |++++|.|.+.|.|.|++.|+|+|.++...... ++.+.     +   +.|.|.+++.+|+|.|+|.|.|..|++.
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~-----~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   68 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVS-----S---GALILTDVQPSDTAVYQCEARNRHGNLL   68 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEee-----C---CEEEECCCChhhCEEEEEEEECCCCeEE
Confidence            789999999999999999999999988643322 33321     2   3799999999999999999999988864

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.41  E-value=4.7e-13  Score=93.93  Aligned_cols=57  Identities=16%  Similarity=0.197  Sum_probs=48.9

Q ss_pred             eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718          69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS  139 (543)
Q Consensus        69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv  139 (543)
                      +.|.|.+.|.|.|.+.|+|||++|...              ...+.|.|.++..+|+|.|+|.|+|..|..
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~   57 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------------HSQHSLQIKDVTEASAGTYTLVLWNSAAGL   57 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc--------------CCcCEEEECCCCHHHCEEEEEEEEECCccE
Confidence            479999999999999999999998521              112479999999999999999999998864

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.41  E-value=1.8e-12  Score=98.80  Aligned_cols=82  Identities=23%  Similarity=0.418  Sum_probs=65.0

Q ss_pred             CeEEeecceeEeecC---CCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeee-cCCCcc
Q psy3718          52 PEFEIKLRNQTSRRG---EPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTE-RGDSAL  127 (543)
Q Consensus        52 p~~~~~~~~~~v~~g---~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~  127 (543)
                      |.|...|.++.+..+   +++.|.|.+.|+|.|++.|+|++..+......++.+.     +   ..|.|.++. .+|+|.
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~-----~---~~L~i~~~~~~~d~G~   73 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV-----G---GNLVISNPSKAKDAGR   73 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE-----C---CEEEEecCCccCCCEE
Confidence            778888888766544   5799999999999999999999998854444444432     2   369999876 599999


Q ss_pred             EEEEEecccceeee
Q psy3718         128 FTCEIKSQKISSQQ  141 (543)
Q Consensus       128 Y~C~a~n~~~sv~~  141 (543)
                      |+|.|+|..|++.+
T Consensus        74 Y~C~a~N~~G~~~S   87 (91)
T cd04967          74 YQCLASNIVGTVLS   87 (91)
T ss_pred             EEEEEEcCCCEEEe
Confidence            99999999887543

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.41  E-value=5.9e-13  Score=96.85  Aligned_cols=66  Identities=20%  Similarity=0.345  Sum_probs=54.4

Q ss_pred             eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceeee
Q psy3718          69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQ  141 (543)
Q Consensus        69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~~  141 (543)
                      ++|.|.+.|.|.|++.|+|++.++....+.++.+.    .+   +.|.|.+++.+|+|.|+|.|.|..|....
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~----~~---g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s   66 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL----RS---GALQIENSEESDQGKYECVATNSAGTRYS   66 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc----CC---cEEEECCCChhhCEEEEEEEECCCCceEc
Confidence            57999999999999999999998865455566542    22   36999999999999999999999887543

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.41  E-value=1.9e-12  Score=98.51  Aligned_cols=86  Identities=21%  Similarity=0.371  Sum_probs=65.0

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEcc-CCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEE
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNM-NNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEI  132 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a  132 (543)
                      +.+.|.+..+..|+++.|.|.+.|.|. .+.|++ ++..+..  ..++.+..   ..+..+.|+|.+++.+|+|.|+|.|
T Consensus         3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~--~~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~A   76 (92)
T cd04977           3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVT--QQQISVVQ---NDDVRSTLTIYNANIEDAGIYKCVA   76 (92)
T ss_pred             EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEecc--CCCEEEEe---CCCCEEEEEEecCCcccCEEEEEEE
Confidence            456788899999999999999999975 999997 6666643  22333321   2345578999999999999999999


Q ss_pred             ecccceeeeeeee
Q psy3718         133 KSQKISSQQMTYE  145 (543)
Q Consensus       133 ~n~~~sv~~~~~~  145 (543)
                      .|..|...+....
T Consensus        77 ~N~~g~~~~~sv~   89 (92)
T cd04977          77 TDAKGTESEATVN   89 (92)
T ss_pred             EcCCCCcceeEEE
Confidence            9986654444443

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.38  E-value=1.9e-12  Score=93.32  Aligned_cols=64  Identities=17%  Similarity=0.418  Sum_probs=52.6

Q ss_pred             CeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718          68 PSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ  140 (543)
Q Consensus        68 ~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~  140 (543)
                      ++.|.|.+.|.|.|++.|+|++.++...  .++.+..    +   ..|.|.+++.+|+|.|+|.|.|..|+++
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~--~~~~~~~----~---~~l~i~~v~~~D~G~Y~C~A~N~~G~~~   64 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPS--DYFKIVK----E---HNLQVLGLVKSDEGFYQCIAENDVGNVQ   64 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCC--CCEEEEe----c---CCEEEEcCCcccCEEEEEEEEcCCCEEE
Confidence            4789999999999999999999988543  3444321    2   2589999999999999999999988864

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.38  E-value=2.1e-12  Score=94.05  Aligned_cols=68  Identities=21%  Similarity=0.329  Sum_probs=54.3

Q ss_pred             eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718          69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ  140 (543)
Q Consensus        69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~  140 (543)
                      ++|.|.+.|.|.|++.|+|++.++.. +..++.+...   ......|.|.+++.+|+|.|+|.|.|..|++.
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~-~~~r~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   68 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTY-NTDRISLYQD---NCGRICLLIQNANKEDAGWYTVSAVNEAGVVS   68 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCC-CCCcEEEEEc---CCCeEEEEECCCCcccCEEEEEEEEcCCCcEE
Confidence            57999999999999999999999854 3345554321   12234799999999999999999999988853

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.37  E-value=2.1e-12  Score=98.23  Aligned_cols=78  Identities=19%  Similarity=0.348  Sum_probs=63.2

Q ss_pred             ecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccc
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQK  136 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  136 (543)
                      .|..+.+.+|+.+.|.|.+.|.|.|.+.|+|++..+...  .++.+..   ..+..+.|.|.++..+|+|.|+|.|.|..
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~--~~~~~~~---~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   81 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELS--EHYSVKL---EQGKYASLTIKGVTSEDSGKYSINVKNKY   81 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCC--CCEEEEE---cCCCEEEEEECCCChhhCEEEEEEEEeCC
Confidence            366788999999999999999999999999999988643  3343321   12333579999999999999999999988


Q ss_pred             cee
Q psy3718         137 ISS  139 (543)
Q Consensus       137 ~sv  139 (543)
                      |..
T Consensus        82 G~~   84 (92)
T cd05891          82 GGE   84 (92)
T ss_pred             Cce
Confidence            774

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.37  E-value=1.9e-12  Score=95.28  Aligned_cols=69  Identities=25%  Similarity=0.407  Sum_probs=56.6

Q ss_pred             CCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718          66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ  140 (543)
Q Consensus        66 g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~  140 (543)
                      |+++.|.|.+.|.|.|.+.|++++..+.  ...++.+..    .+..+.|.|.++..+|+|.|+|.|.|..|.+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~--~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   69 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVP--DSARVSITS----EGGYGTLTIRDVKESDQGAYTCEAINTRGMVF   69 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECC--CCCCEEEEE----CCCEEEEEECCCChHHCEEEEEEEEecCCEEE
Confidence            7899999999999999999999998875  233454432    23346899999999999999999999988754

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.36  E-value=2.5e-12  Score=94.26  Aligned_cols=72  Identities=18%  Similarity=0.332  Sum_probs=55.2

Q ss_pred             eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee-eeeeecc
Q psy3718          69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ-QMTYEAS  147 (543)
Q Consensus        69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~-~~~~~v~  147 (543)
                      ++|.|.+.|.|.|++.|+|+|.++... ..++.+..    .  .+.|.|.++.++|+|.|.|.|.|..|++. ...+.|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~-~~~~~~~~----~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~   73 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDG-QGNYSVSS----K--ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS   73 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCC-CccEEEeC----C--CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence            579999999999999999999998543 23444321    1  14799999999999999999999988753 2344443

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.36  E-value=2.5e-12  Score=94.33  Aligned_cols=69  Identities=25%  Similarity=0.460  Sum_probs=53.9

Q ss_pred             eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeec----CCCccEEEEEecccceeeeee
Q psy3718          69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTER----GDSALFTCEIKSQKISSQQMT  143 (543)
Q Consensus        69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~D~G~Y~C~a~n~~~sv~~~~  143 (543)
                      ++|.|.+.|.|.|++.|+||+.++......++.+..   .+   +.|.|.++..    +|+|.|+|.|+|..|++.+..
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~---~~---g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~   73 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKP---DS---GTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNE   73 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeC---CC---CEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccc
Confidence            579999999999999999999998655555554431   12   4789998754    789999999999988864433

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.36  E-value=2.7e-12  Score=93.07  Aligned_cols=68  Identities=12%  Similarity=0.087  Sum_probs=51.2

Q ss_pred             EEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718          71 LQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS  139 (543)
Q Consensus        71 l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv  139 (543)
                      |.|.+.|.|.|+|+|+|||.+|.........+... ......+.|.|.++..+|+|.|+|+|+|..|++
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~   70 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVI-NNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGED   70 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEee-cccceEEEEEECCCCcccCEEEEEEEEcCCccc
Confidence            78999999999999999999996432211121111 011234689999999999999999999998875

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.36  E-value=2.3e-12  Score=95.01  Aligned_cols=71  Identities=24%  Similarity=0.435  Sum_probs=58.5

Q ss_pred             cceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccc
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKI  137 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  137 (543)
                      |+...+.+|+.+.|.|.+.+. .+.+.|+|||.+|..  +.++.+..        ..|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~--~~~~~~~~--------~~L~I~~~~~~DsG~Y~C~a~n~~g   69 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGE--NNRTRITG--------EEVQIKDAVPRDSGLYACVTSSPSG   69 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCC--CceEEEeC--------CEEEECCCChhhCEEEEEEEeCCCC
Confidence            567788999999999999997 568999999999864  33454431        2699999999999999999999866


Q ss_pred             ee
Q psy3718         138 SS  139 (543)
Q Consensus       138 sv  139 (543)
                      +.
T Consensus        70 ~~   71 (79)
T cd04973          70 SD   71 (79)
T ss_pred             cc
Confidence            63

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.35  E-value=2.9e-12  Score=94.18  Aligned_cols=68  Identities=22%  Similarity=0.407  Sum_probs=54.7

Q ss_pred             CCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718          66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ  140 (543)
Q Consensus        66 g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~  140 (543)
                      |++++|.|.+.|.|.|++.|+++|.++...... ....   ..+   ..|.|.+++.+|+|.|+|.|.|..|++.
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~---~~~---~~L~i~~v~~~D~G~Y~C~A~N~~G~~~   68 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRR---VDG---GTLILSNVQPNDTAVYQCNASNVHGYLL   68 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEE---ccC---CEEEECCCChhhCEEEEEEEEccCCeEE
Confidence            789999999999999999999999988643322 1111   112   4799999999999999999999988853

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.35  E-value=5.1e-12  Score=92.15  Aligned_cols=66  Identities=24%  Similarity=0.351  Sum_probs=54.2

Q ss_pred             CeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718          68 PSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS  139 (543)
Q Consensus        68 ~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv  139 (543)
                      .+.|.|.+.|.|.|++.|+|+|.++..  +.++.+..    ....+.|.|.++..+|+|.|+|.|.|..|+.
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~--~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   66 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKL--SGRVQIET----TASSTSLVIKNAERSDSGKYTLTLKNPAGEK   66 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCC--CCeEEEEE----CCCeEEEEECCCCcCcCEEEEEEEECCCccE
Confidence            478999999999999999999999843  34454432    2234689999999999999999999998874

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.34  E-value=4.2e-12  Score=93.53  Aligned_cols=71  Identities=14%  Similarity=0.182  Sum_probs=53.4

Q ss_pred             EEEEEeeccCCceEEEccCCeecCCCCCCceEEeeee-cCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718          70 VLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI-LPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ  140 (543)
Q Consensus        70 ~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~  140 (543)
                      -|.|.+.|.|.|++.|+|||++|......+..+.... ......+.|.|.++..+|+|.|+|.|+|..|++.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~   73 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDS   73 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCee
Confidence            3789999999999999999999975442222222110 0123346899999999999999999999988853

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.34  E-value=5.2e-12  Score=95.10  Aligned_cols=74  Identities=18%  Similarity=0.313  Sum_probs=59.2

Q ss_pred             eEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCC-ceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718          61 QTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDN-RYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS  139 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv  139 (543)
                      +.+.+|+++.|.|.+.|.|.|.+.|+|+|.++...... .+.+.      .....|.|.++.++|+|.|+|.|.|..|++
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~------~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~   77 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVR------NQHWSLIMESVVPSDKGNYTCVVENEYGSI   77 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEe------CCceEEEEccCCcccCEEEEEEEEeCCCEE
Confidence            56789999999999999999999999999998643221 11211      112479999999999999999999999986


Q ss_pred             e
Q psy3718         140 Q  140 (543)
Q Consensus       140 ~  140 (543)
                      .
T Consensus        78 ~   78 (85)
T cd05857          78 N   78 (85)
T ss_pred             E
Confidence            4

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.33  E-value=6e-12  Score=91.98  Aligned_cols=70  Identities=20%  Similarity=0.339  Sum_probs=54.0

Q ss_pred             eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeee---c-CCCccEEEEEecccceeeeeee
Q psy3718          69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTE---R-GDSALFTCEIKSQKISSQQMTY  144 (543)
Q Consensus        69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~---~-~D~G~Y~C~a~n~~~sv~~~~~  144 (543)
                      +.|.|.+.|.|.|++.|+|++.++....+.++.+..   .+   +.|.|.++.   + +|+|.|+|.|+|..|.+.....
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~---~~---~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~   74 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRR---RS---GTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKI   74 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeC---CC---ceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEE
Confidence            479999999999999999999987655555665431   12   479998764   2 4699999999999998765444

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.33  E-value=7e-12  Score=93.62  Aligned_cols=71  Identities=21%  Similarity=0.439  Sum_probs=54.2

Q ss_pred             CCeEEEEEeeccCCc--eEEEccCCeecCCCC-CCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718          67 EPSVLQCEAKGEKPI--GILWNMNNKRLDPKS-DNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ  140 (543)
Q Consensus        67 ~~~~l~C~~~g~p~~--~i~W~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~  140 (543)
                      ++++|.|.+.|+|.|  .+.|++|+.++.... +.++.... .  ....++|.|.+++.+|+|.|+|.|.|..|++.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~-~--~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~   74 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRME-V--KETIGDLVIVNAQLSHAGTYTCTAQTVVDSAS   74 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEE-e--cceEeEEEEccCChhhCeEEEEEEecCCCCEE
Confidence            478999999999986  689999999985432 33332211 1  12235899999999999999999999988864

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.33  E-value=2.2e-12  Score=92.41  Aligned_cols=62  Identities=18%  Similarity=0.409  Sum_probs=51.7

Q ss_pred             eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718          69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS  139 (543)
Q Consensus        69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv  139 (543)
                      +.|.|.+.|.|.|.+.|+|++.++..  ..++.+..    +   +.|.|.++..+|+|.|+|.|.|..|..
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~--~~~~~~~~----~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~   62 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTE--SGKFHISP----E---GYLAIRDVGVADQGRYECVARNTIGYA   62 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCC--CCCEEECC----C---CEEEECcCChhhCEEEEEEEECCCCcE
Confidence            57999999999999999999998853  34454421    2   379999999999999999999998874

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.32  E-value=3.1e-12  Score=91.03  Aligned_cols=61  Identities=15%  Similarity=0.275  Sum_probs=50.1

Q ss_pred             eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718          69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ  140 (543)
Q Consensus        69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~  140 (543)
                      +.|.|.+.|.|.|.+.|+|||.++...  .++.       .+  +.|.|.++..+|+|.|+|.|.|..|+.+
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~--~~~~-------~~--~~L~I~~v~~~D~G~YtC~a~N~~G~~~   61 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLN--HTFK-------RG--VHLTIYEVTEKDAGNYTVVLTNPITKEE   61 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCC--CEEc-------cC--CEEEECcCCHHHCEEEEEEEEECCCcee
Confidence            479999999999999999999998532  2221       11  3699999999999999999999988653

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.32  E-value=4.7e-12  Score=91.97  Aligned_cols=66  Identities=21%  Similarity=0.409  Sum_probs=55.1

Q ss_pred             CCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718          66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ  140 (543)
Q Consensus        66 g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~  140 (543)
                      |+.+.|.|.+.|.|.|++.|+|++..+..  ..++.+.    .+   ..|.|.+++.+|+|.|+|.|.|..|+..
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~--~~~~~~~----~~---~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   66 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTN--SSRICIW----PD---GSLEILNVTKSDEGKYTCFAENFFGKAN   66 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEccc--CCCEEEC----CC---CeEEEccCChhHCEEEEEEEECCCCceE
Confidence            78899999999999999999999998853  3344432    22   3699999999999999999999988753

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.32  E-value=6.7e-12  Score=92.47  Aligned_cols=71  Identities=17%  Similarity=0.355  Sum_probs=53.8

Q ss_pred             CCeEEEEEeeccC--CceEEEccCCeecCCC-CCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718          67 EPSVLQCEAKGEK--PIGILWNMNNKRLDPK-SDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ  140 (543)
Q Consensus        67 ~~~~l~C~~~g~p--~~~i~W~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~  140 (543)
                      +++.|.|.+.++|  .+.+.|+|||++|... +..+|.+...   ....++|.|.+++.+|+|.|+|.|+|..+++.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~---~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~   74 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGG---QDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLS   74 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEecc---CCCCCcEEEecCCHHHCEEEEEEEEcccCceE
Confidence            4689999998855  7899999999999653 3334443211   01224799999999999999999999977753

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.31  E-value=6.9e-12  Score=89.37  Aligned_cols=63  Identities=21%  Similarity=0.258  Sum_probs=50.2

Q ss_pred             CCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718          66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ  140 (543)
Q Consensus        66 g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~  140 (543)
                      |++++|.|.+.|.|.|.|.|+|++.++...  .++.+     .   ...|.|.++  +|+|.|+|.|.|..|++.
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~--~~~~~-----~---~~~L~i~~~--~d~G~Y~C~A~N~~G~~~   63 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKE--DEMPV-----G---RNVLELTNI--YESANYTCVAISSLGMIE   63 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCc--cceec-----C---ccEEEEecc--ccCeeEEEEEEeCCCEEE
Confidence            788999999999999999999999987532  22221     1   136889886  489999999999988754

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.30  E-value=4.6e-12  Score=91.07  Aligned_cols=61  Identities=26%  Similarity=0.378  Sum_probs=50.4

Q ss_pred             eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718          69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS  139 (543)
Q Consensus        69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv  139 (543)
                      +.|.|.+.|.|.|.+.|+|||.++...  .++..      .+  +.|.|.++..+|+|.|+|.|.|..|..
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~--~~~~~------~~--~~L~I~~v~~~D~G~YtC~a~N~~g~~   61 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEK--NRTKK------SG--HSLTIKDVTEEDAGNYTVVLTNKQAKL   61 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCC--CEEEc------CC--CEEEECcCCHHHCEEEEEEEEcCCccE
Confidence            479999999999999999999998643  33321      11  479999999999999999999988764

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.30  E-value=9.7e-12  Score=94.30  Aligned_cols=75  Identities=15%  Similarity=0.207  Sum_probs=53.3

Q ss_pred             CCCeEEEEEeeccCCceEEEccCC----eecCCCCCCceEEeee---ecCCCceeeEEEEeeecCCCccEEEEEecccce
Q psy3718          66 GEPSVLQCEAKGEKPIGILWNMNN----KRLDPKSDNRYTIREE---ILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS  138 (543)
Q Consensus        66 g~~~~l~C~~~g~p~~~i~W~~~~----~~i~~~~~~~~~~~~~---~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s  138 (543)
                      |+.++|.|.+.|.|.|+|.|+|++    ..+.........+...   ....+....|.|.+++.+|+|.|+|.|.|..|+
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            789999999999999999999963    3443222222222111   011123357999999999999999999999887


Q ss_pred             ee
Q psy3718         139 SQ  140 (543)
Q Consensus       139 v~  140 (543)
                      +.
T Consensus        81 ~~   82 (90)
T cd04974          81 SH   82 (90)
T ss_pred             cc
Confidence            53

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.30  E-value=1.1e-11  Score=90.52  Aligned_cols=70  Identities=23%  Similarity=0.455  Sum_probs=52.5

Q ss_pred             eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeec----CCCccEEEEEecccceeeeeee
Q psy3718          69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTER----GDSALFTCEIKSQKISSQQMTY  144 (543)
Q Consensus        69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~D~G~Y~C~a~n~~~sv~~~~~  144 (543)
                      +.|.|.+.|.|.|++.|+|++.++......++.+.   ..+   ++|.|..+..    .|.|.|+|.|+|..|.+....+
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~---~~~---g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~   74 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMK---PNT---GTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNI   74 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEe---CCC---ceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEE
Confidence            47999999999999999999998854444444432   112   3688887764    3789999999999888654433

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.30  E-value=9.8e-12  Score=90.89  Aligned_cols=65  Identities=20%  Similarity=0.388  Sum_probs=50.3

Q ss_pred             eEEEEEeeccCCceEEEccCCeecCC-CCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718          69 SVLQCEAKGEKPIGILWNMNNKRLDP-KSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS  139 (543)
Q Consensus        69 ~~l~C~~~g~p~~~i~W~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv  139 (543)
                      ++|.|.+.|.|.|++.|+|++....+ ....++.+.    ..+  +.|.|.+++.+|+|.|+|.|.|..|++
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~----~~~--~~L~I~~~~~~D~G~Y~C~A~N~~G~~   66 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVM----PED--DVFFIVDVKIEDTGVYSCTAQNTAGSI   66 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEe----cCC--CEEEEeeCCcccCEEEEEEEEcCCCEE
Confidence            57999999999999999999865322 223344432    122  379999999999999999999998875

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.27  E-value=1.5e-11  Score=89.81  Aligned_cols=67  Identities=19%  Similarity=0.339  Sum_probs=57.5

Q ss_pred             CeEEeecceeEeecCCCeEEEEEeeccCC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718          52 PEFEIKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC  130 (543)
Q Consensus        52 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  130 (543)
                      |+++..|+...+.+|++++|.|.+.+.|. ..+.|+||+..+.. .               ...|.|.++ .+|+|.|+|
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-~---------------~~~l~i~~~-~~dsG~Y~C   63 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-T---------------TNSYRIRAA-NNDSGEYRC   63 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-c---------------CCeEEEeec-ccCCEEeEE
Confidence            67888899999999999999999999876 57999999988731 1               136899999 999999999


Q ss_pred             EEecc
Q psy3718         131 EIKSQ  135 (543)
Q Consensus       131 ~a~n~  135 (543)
                      .|.|.
T Consensus        64 ~a~~~   68 (78)
T cd05752          64 QTQGS   68 (78)
T ss_pred             ECCCC
Confidence            99985

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.27  E-value=1.4e-11  Score=91.15  Aligned_cols=69  Identities=23%  Similarity=0.487  Sum_probs=57.1

Q ss_pred             ecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      .|++..+..|+++.|.|.+.+ +.+++.|++||.+|..+. .++.+.     +   ..|.|.+++.+|+|.|+|.|.+.
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~-~r~~~~-----~---~~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPES-AKYLLY-----R---DGLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCC-ceEEEE-----C---CcEEEeCCCHHHCEEEEEEEEec
Confidence            477889999999999999864 678999999999997542 445432     2   25999999999999999999985

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.27  E-value=1.5e-11  Score=93.46  Aligned_cols=74  Identities=15%  Similarity=0.216  Sum_probs=53.2

Q ss_pred             CCCeEEEEEeeccCCceEEEccC----CeecCCCCCCceEEeee---ecCCCceeeEEEEeeecCCCccEEEEEecccce
Q psy3718          66 GEPSVLQCEAKGEKPIGILWNMN----NKRLDPKSDNRYTIREE---ILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS  138 (543)
Q Consensus        66 g~~~~l~C~~~g~p~~~i~W~~~----~~~i~~~~~~~~~~~~~---~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s  138 (543)
                      |++++|.|.+.|.|.|.+.|+|+    +.++.........+...   .......+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            78999999999999999999984    45554332222222110   011122368999999999999999999999887


Q ss_pred             e
Q psy3718         139 S  139 (543)
Q Consensus       139 v  139 (543)
                      .
T Consensus        81 ~   81 (90)
T cd05858          81 S   81 (90)
T ss_pred             c
Confidence            4

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.26  E-value=8.3e-12  Score=89.94  Aligned_cols=63  Identities=22%  Similarity=0.384  Sum_probs=50.2

Q ss_pred             eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718          69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ  140 (543)
Q Consensus        69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~  140 (543)
                      +.|.|.+.|.|.|.+.|+|++.++...   +....    ..  ...|.|.+++.+|+|.|+|.|.|..|...
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~---~~~~~----~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   63 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPN---RTKKL----NN--NKTLQLDNVLESDDGEYVCTAENSEGSAR   63 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCC---ceeEE----cC--CCEEEEcccCHHhCEEEEEEEEcCCCeEE
Confidence            479999999999999999999877432   12211    11  24799999999999999999999988753

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.26  E-value=7.2e-12  Score=89.26  Aligned_cols=59  Identities=19%  Similarity=0.303  Sum_probs=48.0

Q ss_pred             eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccc
Q psy3718          69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQK  136 (543)
Q Consensus        69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  136 (543)
                      +.|.|.+.|.|.|++.|+||+.++.. ...++..      ++  .+|.|.++..+|+|.|+|.|+|..
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~-~~~~~~~------~~--~~L~I~~v~~~D~G~YtC~a~~~~   59 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAE-KCSRYHV------DG--YSLVIKDVTEEDAGIYTILLGIKQ   59 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCC-CCcEEEe------CC--CEEEECcCCHHHCEEEEEEEEccc
Confidence            47999999999999999999999853 2233332      12  379999999999999999999963

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.25  E-value=2e-11  Score=91.32  Aligned_cols=71  Identities=25%  Similarity=0.354  Sum_probs=57.0

Q ss_pred             eEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718          61 QTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS  139 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv  139 (543)
                      +....|+++.|.|.+.|.|.|.+.|+|++..+......  ..      ......|.|.++..+|+|.|+|.|.|..|++
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~--~~------~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   74 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIG--ES------RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEI   74 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccc--ee------cCceEEEEEccCChhhCEEEEEEEEcCCccE
Confidence            44667999999999999999999999999887543221  11      1122579999999999999999999998874

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>KOG4258|consensus

Probab=99.25  E-value=3.9e-10  Score=112.33  Aligned_cols=139  Identities=24%  Similarity=0.387  Sum_probs=97.4

Q ss_pred             eeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCC-------------CCCceEEEEeee---ccCCceeEEEEC
Q psy3718         254 HIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETST-------------DKPFLFETVDFS---KEEGKEHHLTLS  317 (543)
Q Consensus       254 ~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~-------------~~~~~~~~~~~~---~~~~~~~~~~i~  317 (543)
                      ++.....+.+++.++|..-...+ .....+|.+.|+....             ..+|....+...   ........+.+.
T Consensus       493 ~~~~~~~~~dsi~lrW~~~~~~d-~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~  571 (1025)
T KOG4258|consen  493 QFSSTVTSADSILLRWERYQPPD-MRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLD  571 (1025)
T ss_pred             eeeeEEeecceeEEEecccCCcc-hhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehh
Confidence            34445567889999999865432 4567899999976431             123333333221   111234467899


Q ss_pred             CCCCCCEEEEEEEEEeCC--CCC--CCCcceeeeccCCCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEE
Q psy3718         318 SLKTYTQYSVVVQALNKL--GPG--PMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY  393 (543)
Q Consensus       318 ~L~p~t~Y~~~V~a~n~~--G~s--~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~  393 (543)
                      +|+|.|.|.+.|.+....  +..  ..|...-++|....|+ ||..+-....++..+.|.|.+|.  .++|.++.|.|.|
T Consensus       572 ~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~Ps-pPl~~ls~snsSsqi~l~W~pP~--~pNG~lt~Ylv~w  648 (1025)
T KOG4258|consen  572 GLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPS-PPLDVLSKSNSSSQILLKWKPPS--QPNGNLTHYLVVW  648 (1025)
T ss_pred             cCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCC-CcchhhhccCcchheeEEecCCC--CCCCceeEEEEEE
Confidence            999999999999998332  222  3567778999999997 77766666666778999999884  6799999999999


Q ss_pred             EeC
Q psy3718         394 GPS  396 (543)
Q Consensus       394 ~~~  396 (543)
                      ...
T Consensus       649 er~  651 (1025)
T KOG4258|consen  649 ERQ  651 (1025)
T ss_pred             Eec
Confidence            874

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.25  E-value=2.3e-11  Score=92.28  Aligned_cols=83  Identities=19%  Similarity=0.399  Sum_probs=62.7

Q ss_pred             ecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCC--CCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEec
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKS--DNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKS  134 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  134 (543)
                      +|..+.+.+|+++.|.|.+.+ |.+.+.|+|++..+....  ..++...     .   ..|.|.+++.+|+|.|.|.|.+
T Consensus         2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~-----~---~~L~I~~~~~~D~G~Y~C~a~~   72 (89)
T cd04979           2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT-----E---DGLLIRSVSPADAGVYTCQSVE   72 (89)
T ss_pred             cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc-----C---CCEEEccCCHHHCEEEEEEEec
Confidence            356788999999999999987 888999999998875433  1233322     1   2599999999999999999998


Q ss_pred             ccceeeeeeeeccc
Q psy3718         135 QKISSQQMTYEASG  148 (543)
Q Consensus       135 ~~~sv~~~~~~v~~  148 (543)
                      ..+......+.|.+
T Consensus        73 ~~~~~~~~~~~l~V   86 (89)
T cd04979          73 HGFKQTLATYSLNV   86 (89)
T ss_pred             CccceeEeEEEEEE
Confidence            75554555555543

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.25  E-value=1.7e-11  Score=93.17  Aligned_cols=76  Identities=17%  Similarity=0.350  Sum_probs=58.2

Q ss_pred             ceeEeecCCCeEEEEEeec-----cCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEe
Q psy3718          59 RNQTSRRGEPSVLQCEAKG-----EKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIK  133 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g-----~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  133 (543)
                      .+..+.+|+++.|.|.+.|     .|.+.|.|+|++.++......+.++..    .+  ..|.|.++..+|+|.|+|.++
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~----~~--~~L~I~~~~~~DsG~Y~C~~~   80 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ----QK--DLLWFLPAALEDSGLYTCVVR   80 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee----cC--CeEEEccCCcccCeEEEEEEc
Confidence            4677889999999999999     688999999999775322211222211    11  479999999999999999999


Q ss_pred             cccceee
Q psy3718         134 SQKISSQ  140 (543)
Q Consensus       134 n~~~sv~  140 (543)
                      |..|.++
T Consensus        81 N~~g~~~   87 (94)
T cd05756          81 NSTYCMK   87 (94)
T ss_pred             CCCccEE
Confidence            9877753

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.24  E-value=1.8e-11  Score=92.97  Aligned_cols=68  Identities=25%  Similarity=0.491  Sum_probs=53.7

Q ss_pred             CCCeEEEEEeeccCCceEEEccCCeecCC------CCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718          66 GEPSVLQCEAKGEKPIGILWNMNNKRLDP------KSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS  139 (543)
Q Consensus        66 g~~~~l~C~~~g~p~~~i~W~~~~~~i~~------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv  139 (543)
                      |++++|.|.+.|.|.|.+.|+|++..+..      ....++.+.    .+   +.|.|.+++.+|+|.|+|.|.|..|++
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~----~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~   73 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS----QT---GDLTITNVQRSDVGYYICQTLNVAGSI   73 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEEC----CC---CeEEEeeCChhhCEEEEEEEEcCCCce
Confidence            78999999999999999999998865311      123344442    22   369999999999999999999998885


Q ss_pred             e
Q psy3718         140 Q  140 (543)
Q Consensus       140 ~  140 (543)
                      .
T Consensus        74 ~   74 (90)
T cd05726          74 L   74 (90)
T ss_pred             E
Confidence            4

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.24  E-value=2.1e-11  Score=87.47  Aligned_cols=62  Identities=26%  Similarity=0.475  Sum_probs=50.3

Q ss_pred             eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718          69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ  140 (543)
Q Consensus        69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~  140 (543)
                      ++|.|.+.|.|.|.+.|+|++..+..   .++.+.    .+   ..|.|.+++.+|+|.|+|.|.|..|...
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~---~~~~~~----~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   62 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPK---GRAEIL----DD---KSLKIRNVTAGDEGSYTCEAENMVGKIE   62 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCC---CcEEEe----eC---CEEEECcCChhHCEEEEEEEEcCCCcEE
Confidence            57999999999999999999877632   244432    12   3799999999999999999999988753

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.23  E-value=4.1e-11  Score=89.97  Aligned_cols=70  Identities=23%  Similarity=0.383  Sum_probs=52.4

Q ss_pred             CCeEEEEEeeccCCc--eEEEccCCeecCCCCC-CceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718          67 EPSVLQCEAKGEKPI--GILWNMNNKRLDPKSD-NRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS  139 (543)
Q Consensus        67 ~~~~l~C~~~g~p~~--~i~W~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv  139 (543)
                      +++.|.|.+.|.|.|  ++.|+|+|.++..... .++.....   ....++|.|.+++.+|+|.|+|.|.|..|+.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~   73 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGG---KDSNGDLMIRNAQLKHAGKYTCTAQTVVDSL   73 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEec---ccccceEEEccCCHHhCeeeEEEEecCCCcE
Confidence            478999999999977  6799999999864322 22221111   1122589999999999999999999987774

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.22  E-value=4.4e-11  Score=87.23  Aligned_cols=65  Identities=26%  Similarity=0.453  Sum_probs=51.9

Q ss_pred             CCCeEEEEEeeccCCceEEEcc-CCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718          66 GEPSVLQCEAKGEKPIGILWNM-NNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS  139 (543)
Q Consensus        66 g~~~~l~C~~~g~p~~~i~W~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv  139 (543)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+.  ...++.+.    .+   +.|.|.++..+|+|.|+|.|.|..|..
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~--~~~~~~~~----~~---~~L~i~~~~~~D~G~Y~C~a~N~~G~~   66 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLIS--NSSRTLVY----DN---GTLDILITTVKDTGSFTCIASNAAGEA   66 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEec--CCCeEEEe----cC---CEEEEEECChhhCEEEEEEEECCCCeE
Confidence            7899999999999999999997 666654  22333321    22   369999999999999999999998874

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.21  E-value=3.4e-11  Score=88.96  Aligned_cols=67  Identities=25%  Similarity=0.465  Sum_probs=49.6

Q ss_pred             eEEEEEeeccCCceEEEccCCeecCCC------CCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceeeee
Q psy3718          69 SVLQCEAKGEKPIGILWNMNNKRLDPK------SDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQM  142 (543)
Q Consensus        69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~~~  142 (543)
                      ++|.|.+.|.|.|.+.|+|++....+.      .+.++.+.    .+   ++|.|.++..+|+|.|+|.|.|..|.....
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~----~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~   73 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL----SN---GSLLIKHVLEEDSGYYLCKVSNDVGADASK   73 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe----cC---CeEEECcCCcccCEEEEEEEEeCCCCCCce
Confidence            579999999999999999975322111      22344332    22   479999999999999999999998875433

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.20  E-value=6.1e-11  Score=86.84  Aligned_cols=67  Identities=28%  Similarity=0.454  Sum_probs=52.8

Q ss_pred             eEEEEEeec-cCCceEEEccCCeecCCCCCCc-eEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718          69 SVLQCEAKG-EKPIGILWNMNNKRLDPKSDNR-YTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS  139 (543)
Q Consensus        69 ~~l~C~~~g-~p~~~i~W~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv  139 (543)
                      +.|.|.+.| .|.|++.|+|++.++....... +.+.    .....+.|.|.++..+|+|.|+|.|.|..|..
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~----~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   69 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIR----NKKKNSELQINKAKLADSGEYTCVVENILGND   69 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEE----ecCceEEEEEccCCcccCeEEEEEEEEcCCce
Confidence            479999999 9999999999999986543322 1221    22344689999999999999999999998774

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.18  E-value=1e-10  Score=88.85  Aligned_cols=74  Identities=20%  Similarity=0.314  Sum_probs=56.6

Q ss_pred             ceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCC------CCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEE
Q psy3718          59 RNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPK------SDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEI  132 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a  132 (543)
                      .++.+.+|+++.|.|.+.|.|.+.+.|++++..+...      .+.++.+..   ......+|.|.++..+|+|.|+|.+
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~L~I~nV~~~D~G~YtC~~   81 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVK---STPTELIISISNVQLSDEGEYTCSI   81 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEe---CCCceEEEEECCCCcccCEEEEEEE
Confidence            5788999999999999999999999999987643111      123443321   1223468999999999999999999


Q ss_pred             ecc
Q psy3718         133 KSQ  135 (543)
Q Consensus       133 ~n~  135 (543)
                      ...
T Consensus        82 ~t~   84 (95)
T cd05882          82 FTM   84 (95)
T ss_pred             Eee
Confidence            884

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.17  E-value=6.9e-11  Score=86.67  Aligned_cols=65  Identities=28%  Similarity=0.476  Sum_probs=53.2

Q ss_pred             eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718          69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS  139 (543)
Q Consensus        69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv  139 (543)
                      +.|.|.+.|.|.|.+.|+|++..+......++.+.    .++  ..|.|.++..+|+|.|+|.|.|..|..
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~----~~~--~~l~I~~~~~~D~G~Y~C~a~N~~G~~   65 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLI----ANG--SELHISNVRYEDTGAYTCIAKNEAGVD   65 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEe----CCC--CEEEECcCCcccCEEEEEEEEcCCCCc
Confidence            47999999999999999999999865544455432    222  469999999999999999999987764

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.15  E-value=4.5e-11  Score=86.48  Aligned_cols=63  Identities=21%  Similarity=0.314  Sum_probs=49.8

Q ss_pred             eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718          69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ  140 (543)
Q Consensus        69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~  140 (543)
                      +.|.|.+.|.|.|.+.|+|++.++...   +....      .....|.|.++..+|+|.|+|.|.|..|...
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~---~~~~~------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   63 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPAD---RTKFE------NFNKTLKIDNVSEEDDGEYRCTASNSLGSAR   63 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCC---ceeEe------cCCCEEEECCCCHHHCEEEEEEEEeCCceEE
Confidence            479999999999999999999877421   22211      1124799999999999999999999988753

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=99.15  E-value=2.8e-10  Score=85.71  Aligned_cols=84  Identities=35%  Similarity=0.607  Sum_probs=69.5

Q ss_pred             CCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEE
Q psy3718         251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQ  330 (543)
Q Consensus       251 ~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~  330 (543)
                      +|.++.+...+.+++.|.|..+...  ++.+.+|.|.|+.......+....+     ......+.+.+|.|++.|.|+|+
T Consensus         2 ~P~~l~v~~~~~~sv~v~W~~~~~~--~~~~~~y~v~~~~~~~~~~~~~~~~-----~~~~~~~~i~~L~p~t~Y~~~v~   74 (85)
T PF00041_consen    2 APENLSVSNISPTSVTVSWKPPSSG--NGPITGYRVEYRSVNSTSDWQEVTV-----PGNETSYTITGLQPGTTYEFRVR   74 (85)
T ss_dssp             SSEEEEEEEECSSEEEEEEEESSST--SSSESEEEEEEEETTSSSEEEEEEE-----ETTSSEEEEESCCTTSEEEEEEE
T ss_pred             cCcCeEEEECCCCEEEEEEECCCCC--CCCeeEEEEEEEecccceeeeeeee-----eeeeeeeeeccCCCCCEEEEEEE
Confidence            6889999999999999999999733  7899999999998877653333333     34556999999999999999999


Q ss_pred             EEeCCCCCCCC
Q psy3718         331 ALNKLGPGPMS  341 (543)
Q Consensus       331 a~n~~G~s~~s  341 (543)
                      |++..|.|++|
T Consensus        75 a~~~~g~g~~S   85 (85)
T PF00041_consen   75 AVNSDGEGPPS   85 (85)
T ss_dssp             EEETTEEEEEE
T ss_pred             EEeCCcCcCCC
Confidence            99999977653

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.14  E-value=1.6e-10  Score=86.01  Aligned_cols=68  Identities=21%  Similarity=0.450  Sum_probs=50.4

Q ss_pred             CCCeEEEEEeeccCCceEEEccCCe---ecCCCCC---CceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718          66 GEPSVLQCEAKGEKPIGILWNMNNK---RLDPKSD---NRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS  139 (543)
Q Consensus        66 g~~~~l~C~~~g~p~~~i~W~~~~~---~i~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv  139 (543)
                      |++++|.|.+.|.|.|.+.|+|++.   ++.....   .++.+.       ..+.|.|.++..+|+|.|.|.|.|..|++
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   73 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVT-------NIGQLVIYNAQPQDAGLYTCTARNSGGLL   73 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEc-------cccEEEEccCCcccCEEEEEEEecCCceE
Confidence            7899999999999999999999742   1111111   111111       12479999999999999999999998885


Q ss_pred             e
Q psy3718         140 Q  140 (543)
Q Consensus       140 ~  140 (543)
                      .
T Consensus        74 ~   74 (81)
T cd05765          74 R   74 (81)
T ss_pred             E
Confidence            3

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.13  E-value=2.4e-10  Score=85.64  Aligned_cols=77  Identities=23%  Similarity=0.440  Sum_probs=60.8

Q ss_pred             CeEEee-cceeEeecCCCeEEEEE-eeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCc-cE
Q psy3718          52 PEFEIK-LRNQTSRRGEPSVLQCE-AKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSA-LF  128 (543)
Q Consensus        52 p~~~~~-~~~~~v~~g~~~~l~C~-~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y  128 (543)
                      |.|... ++.+.+.+|+.+.|.|. ..|.|.|.|.|++++..+.. .+.|+.+.    .+   ++|.|.++..+|+| .|
T Consensus         3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~-~~~Ri~~~----~~---GnL~fs~v~~~D~g~~Y   74 (95)
T cd05845           3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT-QDERVSMG----QN---GNLYFANVEEQDSHPDY   74 (95)
T ss_pred             CcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcccc-ccccEEEC----CC---ceEEEEEEehhhCCCCe
Confidence            344433 56789999999999997 79999999999988765432 45566543    22   48999999999999 89


Q ss_pred             EEEEeccc
Q psy3718         129 TCEIKSQK  136 (543)
Q Consensus       129 ~C~a~n~~  136 (543)
                      .|.|+|..
T Consensus        75 ~C~a~~~~   82 (95)
T cd05845          75 ICHAHFPG   82 (95)
T ss_pred             EEEEEccc
Confidence            99999974

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.13  E-value=1.8e-10  Score=84.39  Aligned_cols=67  Identities=25%  Similarity=0.443  Sum_probs=51.0

Q ss_pred             eEEEEEeec-cCCceEEEccCCeecCCCCC--CceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718          69 SVLQCEAKG-EKPIGILWNMNNKRLDPKSD--NRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS  139 (543)
Q Consensus        69 ~~l~C~~~g-~p~~~i~W~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv  139 (543)
                      +.|.|.+.+ .|.+.+.|+|+++++.....  .++.+.    ..+..+.|.|.++..+|+|.|+|.|+|..|..
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~----~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~   70 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIR----KKKKSSELQISKASLADNGEYKCMVSSKLGND   70 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEE----eCCcEEEEEECcCCcccCEEEEEEEEeCCCce
Confidence            479999875 57799999999999864332  223322    12334689999999999999999999987764

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.13  E-value=3.3e-10  Score=84.43  Aligned_cols=70  Identities=16%  Similarity=0.353  Sum_probs=50.3

Q ss_pred             CCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccc
Q psy3718          66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKI  137 (543)
Q Consensus        66 g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  137 (543)
                      |++++|.|.+.|.|.+.+.|+++++............  ........+.|.|.+++.+|+|.|+|.|+|..+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~   70 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEV--KVPATTLRSTLTFPHATVEDSGTYECAAHESTQ   70 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEE--ecCCcEEEEEEEECCCCcCCCEEEEEEEEECcc
Confidence            7899999999999999999998876432111000011  111223457899999999999999999998643

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.13  E-value=4.1e-10  Score=85.95  Aligned_cols=75  Identities=19%  Similarity=0.300  Sum_probs=56.2

Q ss_pred             cceeEeecCCCeEEEEEeeccCCceEEEccCCeec-C-----CCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEE
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRL-D-----PKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCE  131 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i-~-----~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~  131 (543)
                      ++++.+.+|++++|.|.+.+.|.+.+.|++.+..+ .     ...+.++.+...   .....+|.|.+++.+|+|.|+|.
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~---~~~~~sL~I~~v~~~DsG~Y~C~   80 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA---SWHELSISISDVSLSDEGQYTCS   80 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEEC---CCCcEEEEECcCCcccCEEEEEE
Confidence            57889999999999999999999999998643211 0     112345544211   22335899999999999999999


Q ss_pred             Eecc
Q psy3718         132 IKSQ  135 (543)
Q Consensus       132 a~n~  135 (543)
                      +.+.
T Consensus        81 ~~t~   84 (95)
T cd07701          81 LFTM   84 (95)
T ss_pred             eEee
Confidence            9985

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.11  E-value=2.6e-10  Score=86.01  Aligned_cols=79  Identities=23%  Similarity=0.360  Sum_probs=57.2

Q ss_pred             eEeecCCCeEEEEEeeccCCceEEEccCCeecCCC------------CCCceEEeeeecCCCceeeEEEEeeecCCCccE
Q psy3718          61 QTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPK------------SDNRYTIREEILPNGVLSDLSIKRTERGDSALF  128 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y  128 (543)
                      +.+.+|++++|.|.+.+.+.+.+.|++++......            ...++.++.... .....+|+|.+++.+|+|.|
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~-~~g~~~L~I~~l~~sDsgtY   80 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLW-DQGSFPLIIKNLKIEDSDTY   80 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccC-CCCeEEEEECCCCHHHCEEE
Confidence            45789999999999999999999999776332121            223333332211 22346799999999999999


Q ss_pred             EEEEecccceee
Q psy3718         129 TCEIKSQKISSQ  140 (543)
Q Consensus       129 ~C~a~n~~~sv~  140 (543)
                      .|.+.|..+.|+
T Consensus        81 ~C~v~~~~~~~~   92 (94)
T cd07690          81 ICEVEDKKEEVE   92 (94)
T ss_pred             EEEECCccceEE
Confidence            999999766553

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.10  E-value=2.2e-10  Score=85.79  Aligned_cols=73  Identities=22%  Similarity=0.331  Sum_probs=53.1

Q ss_pred             CCCeEEEEEeecc--CCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718          66 GEPSVLQCEAKGE--KPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS  139 (543)
Q Consensus        66 g~~~~l~C~~~g~--p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv  139 (543)
                      |++++|.|.+.|.  |.+.+.|.++++.+......... ..........+.|.|.+++.+|+|.|+|.|.|..+..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~   75 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTR-QSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQ   75 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecc-cccccceEEEEEEEECCCChhhCEEEEEEEccCCCce
Confidence            7899999999999  88999999988765322111000 0000122345789999999999999999999987663

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.09  E-value=2.9e-10  Score=85.37  Aligned_cols=74  Identities=19%  Similarity=0.279  Sum_probs=58.6

Q ss_pred             EeecceeEeecCCCeEEEEEeec-cCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEe
Q psy3718          55 EIKLRNQTSRRGEPSVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIK  133 (543)
Q Consensus        55 ~~~~~~~~v~~g~~~~l~C~~~g-~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  133 (543)
                      ...|..+.+.+|++++|.|.+.+ .|.+.+.|++++..+..    +..      ..  .+.|.|.+++.+|+|.|.|.|.
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~----~~~------~~--~~~L~I~~v~~~DsG~Y~C~a~   72 (85)
T cd05754           5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS----RAM------DF--NGILTIRNVQLSDAGTYVCTGS   72 (85)
T ss_pred             ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC----ccc------cc--CCEEEECCCCHHHCEEEEEEEe
Confidence            34567788999999999999975 68899999999876532    111      11  1479999999999999999999


Q ss_pred             cccceee
Q psy3718         134 SQKISSQ  140 (543)
Q Consensus       134 n~~~sv~  140 (543)
                      |..|...
T Consensus        73 n~~g~~~   79 (85)
T cd05754          73 NMLDTDE   79 (85)
T ss_pred             ccCCeEe
Confidence            9877753

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.09  E-value=3.8e-10  Score=83.76  Aligned_cols=73  Identities=19%  Similarity=0.224  Sum_probs=56.3

Q ss_pred             eeEeecCCCeEEEEEeec-cCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccce
Q psy3718          60 NQTSRRGEPSVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS  138 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g-~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s  138 (543)
                      ...+.+|++++|.|.+.+ .+.+.+.|+|+|..+....              ...+|.|.+++.+|+|.|.|.|.+..+.
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~--------------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~   73 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH--------------SNSNLSIPQATLSDSGSYHCSGIIGSYD   73 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC--------------CCceEEECccCHHHCEEEEEEEEeCCce
Confidence            446789999999999854 5668899999998764210              1147999999999999999999998776


Q ss_pred             eeeeeeec
Q psy3718         139 SQQMTYEA  146 (543)
Q Consensus       139 v~~~~~~v  146 (543)
                      ..+.++.|
T Consensus        74 ~~s~~~~i   81 (83)
T cd05753          74 YSSEPVSI   81 (83)
T ss_pred             ecCCCEEE
Confidence            54444433

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.07  E-value=4.4e-10  Score=84.36  Aligned_cols=72  Identities=21%  Similarity=0.320  Sum_probs=55.0

Q ss_pred             ceeEeecCCCeEEEEEe-eccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccc
Q psy3718          59 RNQTSRRGEPSVLQCEA-KGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQK  136 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  136 (543)
                      ....+.+|+.+.|.|.. .|.|.+.+.|++++.++....+.+..+..   .+   ++|.|.++..+|+|.|+|.|+|..
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~---~~---G~L~fs~v~~~D~g~Y~C~A~n~~   83 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ---TN---GNLYIAKVEASDRGNYSCFVSSPS   83 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC---CC---CcEEEeecCHhhCceeEEEEEecc
Confidence            34678999999999964 67899999999998875322233322221   23   489999999999999999999963

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>KOG0196|consensus

Probab=98.99  E-value=9.8e-09  Score=102.36  Aligned_cols=125  Identities=30%  Similarity=0.459  Sum_probs=100.2

Q ss_pred             eEEEEEEEEEcCCCCCCC----CccEEEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCC
Q psy3718         218 KTYHIRIVAENEIGSSEP----SDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETST  293 (543)
Q Consensus       218 ~~y~~~v~a~n~~G~~~~----s~~~~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~  293 (543)
                      ++|.|.|.|.|..-.-.+    ...+.+.+....|+ +...++....+.+++.|+|..|...  ++.+..|+|.|.+.+.
T Consensus       409 ~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps-~V~~~r~~~~~~~sitlsW~~p~~p--ng~ildYEvky~ek~~  485 (996)
T KOG0196|consen  409 TNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPS-PVSVLRQVSRTSDSITLSWSEPDQP--NGVILDYEVKYYEKDE  485 (996)
T ss_pred             cccEEEEEEeecccccCCCCCcceeEEeeccccCCC-ccceEEEeeeccCceEEecCCCCCC--CCcceeEEEEEeeccc
Confidence            999999999997654322    23445666666665 5558899999999999999999877  8889999999988765


Q ss_pred             CCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCCCCcceeeeccCC
Q psy3718         294 DKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEG  351 (543)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t~~~  351 (543)
                      . +..+..+     ....+..++.+|+|++.|.|+|+|+..+|.|+.|....++|.+.
T Consensus       486 ~-e~~~~~~-----~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~  537 (996)
T KOG0196|consen  486 D-ERSYSTL-----KTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS  537 (996)
T ss_pred             c-ccceeEE-----ecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence            3 2333333     23567899999999999999999999999999999999999754

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.99  E-value=4.3e-09  Score=79.16  Aligned_cols=74  Identities=20%  Similarity=0.272  Sum_probs=57.4

Q ss_pred             eEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718          61 QTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS  139 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv  139 (543)
                      +.+..|+.+.|.|.+.+.|.+.+.|++++..+...  .......   .......|.|.++..+|+|.|.|.|.|..|..
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~--~~~~~~~---~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~   77 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKE--HRIGGYK---VRKKKWTLILESVVPSDSGKYTCIVENKYGSI   77 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECccc--CceeEEE---ccCcEEEEEEeECCcccCEEEEEEEEECCceE
Confidence            45678999999999999999999999999887532  2222111   12233579999999999999999999987764

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.99  E-value=9.4e-10  Score=83.01  Aligned_cols=69  Identities=16%  Similarity=0.264  Sum_probs=54.2

Q ss_pred             eeEeecCCCeEEEEEeecc-----CCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEec
Q psy3718          60 NQTSRRGEPSVLQCEAKGE-----KPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKS  134 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~-----p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  134 (543)
                      .+.+..|+++.|.|...+.     |.|.+.|+||+.++...  .+ .+.    .+   +.|.|.++..+|+|.|+|.|.|
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~--~~-~~~----~~---~~L~I~~v~~~DsG~YtC~~~n   73 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD--RK-RFV----KG---SKLLIQNVTEEDAGNYTCKLTF   73 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCC--cc-EEe----cC---CEEEEeeCChhhCEEEEEEEEe
Confidence            4678899999999997653     56899999999998532  22 221    11   4799999999999999999999


Q ss_pred             ccce
Q psy3718         135 QKIS  138 (543)
Q Consensus       135 ~~~s  138 (543)
                      ..+.
T Consensus        74 ~~~~   77 (92)
T cd05757          74 THNG   77 (92)
T ss_pred             cCCC
Confidence            7655

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.92  E-value=7.4e-09  Score=79.51  Aligned_cols=75  Identities=20%  Similarity=0.351  Sum_probs=55.0

Q ss_pred             cceeEeecCCCeEEEEEeeccCCceEEEccCCeec-C-----CCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEE
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRL-D-----PKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCE  131 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i-~-----~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~  131 (543)
                      ++++.+.+|++++|.|.+.+.+.+.+.|++.+..+ .     ...+.++.+..   ..+...+|.|.+++.+|+|.|.|.
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~   80 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVN---FSANELSISISNVSLSDEGRYTCS   80 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEc---CCCCeeEEEEccCCcccCEEEEEE
Confidence            45688999999999999999888999998633221 0     01234555421   122335799999999999999999


Q ss_pred             Eecc
Q psy3718         132 IKSQ  135 (543)
Q Consensus       132 a~n~  135 (543)
                      +.+.
T Consensus        81 ~~~~   84 (95)
T cd05717          81 LYTM   84 (95)
T ss_pred             EecC
Confidence            9885

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.91  E-value=4.4e-09  Score=73.83  Aligned_cols=62  Identities=27%  Similarity=0.447  Sum_probs=49.6

Q ss_pred             cCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccc
Q psy3718          65 RGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQK  136 (543)
Q Consensus        65 ~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  136 (543)
                      +|++++|.|.+.+.|.+.+.|++++..+.  .  .....      .....|.|.++..+|+|.|+|.+.|..
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~--~--~~~~~------~~~~~L~i~~~~~~d~G~Y~C~~~n~~   62 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP--E--SNRLS------ASGSTLTIKSVSLEDSGEYTCVAENSA   62 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC--C--CCEEe------cCCcEEEEeeCCcccCEEEEEEEecCC
Confidence            48899999999989999999999998875  1  11111      112479999999999999999999864

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.89  E-value=5.9e-09  Score=77.38  Aligned_cols=77  Identities=21%  Similarity=0.402  Sum_probs=58.5

Q ss_pred             CeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEE
Q psy3718          52 PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCE  131 (543)
Q Consensus        52 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~  131 (543)
                      |.+...+  ..+.+|++++|.|.+.+.|.+.+.|++++..+....                ..|.|.++..+|+|.|+|.
T Consensus         2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~----------------~~~~~~~~~~~~~g~y~C~   63 (80)
T PF13895_consen    2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ----------------NGLFIPNVSPEDSGNYTCR   63 (80)
T ss_dssp             -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES----------------SEEEESSEEGGGTEEEEEE
T ss_pred             cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee----------------eeeeeeeeccccCEEEEEE
Confidence            5555544  668999999999999999899999999887774110                1267788999999999999


Q ss_pred             Eecccceeeeeeeec
Q psy3718         132 IKSQKISSQQMTYEA  146 (543)
Q Consensus       132 a~n~~~sv~~~~~~v  146 (543)
                      |.+..+.....++.|
T Consensus        64 ~~~~~~~~~s~~~~v   78 (80)
T PF13895_consen   64 ASNGSGSNTSTSVNV   78 (80)
T ss_dssp             EEETTEEEEEEEEEE
T ss_pred             EEeCCCCeEeeeEEe
Confidence            999766544444443

...

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.88  E-value=1.1e-08  Score=77.24  Aligned_cols=67  Identities=15%  Similarity=0.366  Sum_probs=49.0

Q ss_pred             eeEeecCCCeEEEEEeeccCCceEEEccCC--eecCC--CCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKPIGILWNMNN--KRLDP--KSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~i~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      .+.+.+|+++.|.|.. +.|.|.+.|+|++  .....  ....++...     +   +.|.|.++.++|+|.|+|.|.+.
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~-----~---~~L~I~~~~~~DsG~Y~C~a~~~   75 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT-----E---RGLLLRSLQRSDAGVYTCTAVEH   75 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe-----c---CeEEEeeCChhHCEEEEEEEEcc
Confidence            4678899999999996 5788999999843  22211  122344332     1   35999999999999999999863

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.84  E-value=1.1e-08  Score=76.42  Aligned_cols=73  Identities=23%  Similarity=0.351  Sum_probs=49.6

Q ss_pred             CCCeEEEEEeeccC--CceEEEccCCeecCCCC-CCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccccee
Q psy3718          66 GEPSVLQCEAKGEK--PIGILWNMNNKRLDPKS-DNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISS  139 (543)
Q Consensus        66 g~~~~l~C~~~g~p--~~~i~W~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv  139 (543)
                      |+++.|.|.+.+++  .+.+.|.++++.+.... ......... ......+.|.|.+++.+|+|.|+|.|+|..+.+
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~-~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~   76 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQ-EHTELSSTLTIENVTLSDLGRYTCTASSGQMIA   76 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceeccccccccc-ccceeeeEEEEecCCcccCEEEEEEEeecceEe
Confidence            78999999999865  46889988776442111 111010000 012345789999999999999999999976653

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.82  E-value=1.3e-08  Score=76.54  Aligned_cols=71  Identities=17%  Similarity=0.318  Sum_probs=52.9

Q ss_pred             eEeecCCCeEEEEEe-e----ccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718          61 QTSRRGEPSVLQCEA-K----GEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~-~----g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      +.+..|.+..|.|.- .    ..+.+++.|+||+.++.. ++.++..-    .+.  ..|.|.++..+|+|.|+|.|++.
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~-~~~~~~~~----~~~--~~L~I~~v~~~D~G~YtC~~~~~   77 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDK-DNEKFYSL----KGS--TYLHIIDVSLNDSGYYTCKLQFT   77 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcC-CCcceEec----CCC--CEEEEEEcChhhCEEEEEEEEEe
Confidence            556789999999973 2    235689999999999853 33343321    111  36999999999999999999997


Q ss_pred             cce
Q psy3718         136 KIS  138 (543)
Q Consensus       136 ~~s  138 (543)
                      .+.
T Consensus        78 ~~g   80 (95)
T cd05897          78 HEG   80 (95)
T ss_pred             eCC
Confidence            554

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=98.81  E-value=5.9e-09  Score=78.41  Aligned_cols=83  Identities=19%  Similarity=0.348  Sum_probs=54.5

Q ss_pred             CCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEe
Q psy3718         356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYG  435 (543)
Q Consensus       356 ~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~  435 (543)
                      +|.++++...+.+++.|.|.+|.  ..++.+.+|.|+|.                                         
T Consensus         2 ~P~~l~v~~~~~~sv~v~W~~~~--~~~~~~~~y~v~~~-----------------------------------------   38 (85)
T PF00041_consen    2 APENLSVSNISPTSVTVSWKPPS--SGNGPITGYRVEYR-----------------------------------------   38 (85)
T ss_dssp             SSEEEEEEEECSSEEEEEEEESS--STSSSESEEEEEEE-----------------------------------------
T ss_pred             cCcCeEEEECCCCEEEEEEECCC--CCCCCeeEEEEEEE-----------------------------------------
Confidence            67888888889999999999773  34555555555554                                         


Q ss_pred             eCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCc
Q psy3718         436 PSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKC  499 (543)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~  499 (543)
                      ..+.. .......   .......+.+.+|.|+ .|.|+|+|              .+..|.|++|
T Consensus        39 ~~~~~-~~~~~~~---~~~~~~~~~i~~L~p~t~Y~~~v~a--------------~~~~g~g~~S   85 (85)
T PF00041_consen   39 SVNST-SDWQEVT---VPGNETSYTITGLQPGTTYEFRVRA--------------VNSDGEGPPS   85 (85)
T ss_dssp             ETTSS-SEEEEEE---EETTSSEEEEESCCTTSEEEEEEEE--------------EETTEEEEEE
T ss_pred             ecccc-eeeeeee---eeeeeeeeeeccCCCCCEEEEEEEE--------------EeCCcCcCCC
Confidence            33321 0001110   0122234566699999 99999999              9999998753

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>KOG4802|consensus

Probab=98.80  E-value=7.7e-08  Score=88.20  Aligned_cols=173  Identities=17%  Similarity=0.178  Sum_probs=105.3

Q ss_pred             EEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEE---------cCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEE
Q psy3718         257 VEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE---------TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSV  327 (543)
Q Consensus       257 ~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~  327 (543)
                      .......++.+.|......      .-|.+.+..         .+....++|+++..   ......+.+++++|+..|+|
T Consensus       154 y~r~~~g~~av~w~~~~~~------~v~~~~~~vr~~w~~g~hase~~~thwQtv~~---t~~e~~~~~t~~rPgRwyef  224 (516)
T KOG4802|consen  154 YFRRSRGSHAVDWKIESSL------LVYYVHVEVRSHWGRGFHASELGPTHWQTVEK---TMEENTYIFTDMRPGRWYEF  224 (516)
T ss_pred             hhhhccCceeeeeeecccc------ceeeeehhhhhhhcccccccccccccceeeee---cCCCceeeeeecCcceeEEE
Confidence            3344567788999876532      222222211         12233455666543   33455888999999999999


Q ss_pred             EEEEEeCCCC---CCCCcceeeeccCCCCCCCCCCcEEEEeccC---eEEEEccCCCCCCCCCceEEEEEEEEeCCcccC
Q psy3718         328 VVQALNKLGP---GPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQ---TIRVSWVSPPLITANGVIKGYKVVYGPSDTWYG  401 (543)
Q Consensus       328 ~V~a~n~~G~---s~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~---~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~  401 (543)
                      +|.|+|..|.   +.++......-.+.+|+ +|.++++..+..+   ...|.|.|+   ..+-+|..|.|.|.-..+   
T Consensus       225 rvaavn~~G~rGFs~PSkpf~ssk~pkaPp-~P~dl~l~~v~~dG~~~~~v~w~P~---~sdlPv~~Yki~Ws~~v~---  297 (516)
T KOG4802|consen  225 RVAAVNAYGFRGFSEPSKPFPSSKNPKAPP-SPNDLKLIGVQFDGRYMLKVVWCPS---KSDLPVEKYKITWSLYVN---  297 (516)
T ss_pred             EEeeeecccccccCCCCCCCCCCCCCCCCc-CcccceeeeeeecceEEEEEEeCCC---CCCCcceeeEEEeehhhh---
Confidence            9999999873   34555544444445554 7888888765432   345666665   456678888887742210   


Q ss_pred             CCCCCccceEEEEeeCCCCCCCCcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCC
Q psy3718         402 DPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPP  480 (543)
Q Consensus       402 ~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~  480 (543)
                                         . ...              .+.......     .+..++++++|.|+ .|.+.|+|     
T Consensus       298 -------------------s-~k~--------------~m~tks~~~-----k~thq~si~~L~Pns~Y~VevqA-----  333 (516)
T KOG4802|consen  298 -------------------S-AKA--------------SMITKSSYV-----KDTHQFSIKELLPNSSYYVEVQA-----  333 (516)
T ss_pred             -------------------h-hhh--------------hccccccee-----eccchhhhhhcCCCCeEEEEEEE-----
Confidence                               0 000              000111111     34446678899999 99999999     


Q ss_pred             CCCCCccccccccccCCC
Q psy3718         481 CPGSDETLYSRHRGESDK  498 (543)
Q Consensus       481 ~~~~~~~~~~~~~G~g~~  498 (543)
                               ++..|.+.-
T Consensus       334 ---------i~y~g~~rL  342 (516)
T KOG4802|consen  334 ---------ISYLGSRRL  342 (516)
T ss_pred             ---------EEeccCccc
Confidence                     888887654

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.77  E-value=6.5e-08  Score=72.67  Aligned_cols=79  Identities=20%  Similarity=0.200  Sum_probs=61.5

Q ss_pred             eeEeecCCCeEEEEEeeccCCce-EEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccce
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKPIG-ILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS  138 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~~~-i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s  138 (543)
                      .+.|.+|+.+.|.|.+.+.|.|+ +.|.+++..+.....+.+..+. .......+.|.+..++.+|+|.|+|.|+|.+++
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~-~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~   90 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRN-ESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS   90 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEec-cCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence            57899999999999999999998 9999998877543333222211 111234578999999999999999999998777


Q ss_pred             e
Q psy3718         139 S  139 (543)
Q Consensus       139 v  139 (543)
                      .
T Consensus        91 ~   91 (101)
T cd05860          91 A   91 (101)
T ss_pred             E
Confidence            4

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.76  E-value=8.1e-08  Score=72.38  Aligned_cols=74  Identities=18%  Similarity=0.303  Sum_probs=56.8

Q ss_pred             ceeEeecCCCeEEEEEeeccCCceEEEccCCeecC------CCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEE
Q psy3718          59 RNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLD------PKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEI  132 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a  132 (543)
                      +++.+.+|++++|.|.+.+.....+.|++.+..+.      ...+.|+.+...   ++...+|.|.+++.+|+|.|.|.+
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~---~~~~~tL~I~~vq~~D~G~Y~Cqv   81 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNF---SSNELRVSLSNVSLSDEGRYFCQL   81 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeC---CCCEEEEEECcCCcccCEEEEEEE
Confidence            56889999999999999998777788887664431      124556665431   344568999999999999999999


Q ss_pred             ecc
Q psy3718         133 KSQ  135 (543)
Q Consensus       133 ~n~  135 (543)
                      ...
T Consensus        82 ~t~   84 (95)
T cd05881          82 YTD   84 (95)
T ss_pred             Ecc
Confidence            773

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.75  E-value=8e-08  Score=69.47  Aligned_cols=67  Identities=15%  Similarity=0.298  Sum_probs=48.2

Q ss_pred             CeEEEEEeec-cCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccce
Q psy3718          68 PSVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS  138 (543)
Q Consensus        68 ~~~l~C~~~g-~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s  138 (543)
                      .+.|.|.+.+ .|+++|.|+||+++|.......  ....  .....+.|.|.....+|.+.|+|.|.|..+.
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~--~~~~--~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQ--ENGK--TVSVSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCcccc--cCCc--eEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            3789999875 6889999999999995432100  0000  0012357999999999999999999998554

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.75  E-value=2.8e-08  Score=69.99  Aligned_cols=63  Identities=24%  Similarity=0.437  Sum_probs=44.9

Q ss_pred             CCCeEEEEEe-eccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEE
Q psy3718          66 GEPSVLQCEA-KGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEI  132 (543)
Q Consensus        66 g~~~~l~C~~-~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a  132 (543)
                      |+.++|.|.+ .+.+...+.|.+++..+...  .....  ..........|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~--~~~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEG--STTNR--STNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEE--EEEEE--EETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCc--ceeEe--ecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 77788999999998766421  11111  1111111123999999999999999987

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>smart00409 IG Immunoglobulin

Probab=98.71  E-value=1.9e-07  Score=70.01  Aligned_cols=74  Identities=28%  Similarity=0.513  Sum_probs=58.6

Q ss_pred             ceeEeecCCCeEEEEEeeccCCceEEEccC-CeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccc
Q psy3718          59 RNQTSRRGEPSVLQCEAKGEKPIGILWNMN-NKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKI  137 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  137 (543)
                      ..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+.  ...++.....    .....|.|.++..+|+|.|.|.+.+..+
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~v~~~~~   75 (86)
T smart00409        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--ESGRFSVSRS----GSNSTLTISNVTPEDSGTYTCAATNSSG   75 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--CCCcEEEEEc----CCeeEEEEEeeccccCeEEEEEEEcCCC
Confidence            456788999999999999988899999998 87775  3344544322    1146899999999999999999998655


Q ss_pred             e
Q psy3718         138 S  138 (543)
Q Consensus       138 s  138 (543)
                      .
T Consensus        76 ~   76 (86)
T smart00409       76 S   76 (86)
T ss_pred             e
Confidence            4

>smart00410 IG_like Immunoglobulin like

Probab=98.71  E-value=1.9e-07  Score=70.01  Aligned_cols=74  Identities=28%  Similarity=0.513  Sum_probs=58.6

Q ss_pred             ceeEeecCCCeEEEEEeeccCCceEEEccC-CeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccc
Q psy3718          59 RNQTSRRGEPSVLQCEAKGEKPIGILWNMN-NKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKI  137 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  137 (543)
                      ..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+.  ...++.....    .....|.|.++..+|+|.|.|.+.+..+
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~v~~~~~   75 (86)
T smart00410        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--ESGRFSVSRS----GSNSTLTISNVTPEDSGTYTCAATNSSG   75 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--CCCcEEEEEc----CCeeEEEEEeeccccCeEEEEEEEcCCC
Confidence            456788999999999999988899999998 87775  3344544322    1146899999999999999999998655


Q ss_pred             e
Q psy3718         138 S  138 (543)
Q Consensus       138 s  138 (543)
                      .
T Consensus        76 ~   76 (86)
T smart00410       76 S   76 (86)
T ss_pred             e
Confidence            4

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.69  E-value=2.4e-08  Score=73.01  Aligned_cols=74  Identities=22%  Similarity=0.378  Sum_probs=52.5

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeeccC-CceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEK-PIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFT  129 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p-~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~  129 (543)
                      +|.|...+.......+. ++|.|.+.+.+ .+.+.|+ +....        ............+.|.|.++..+|.|.|+
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~--------~~~~~~~~~~~~~~L~i~~v~~~~~g~y~   70 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPS--------FNSNSRGSSSSNSTLTISNVTRSDNGTYT   70 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEE--------EEEEEEEEEEEEEEEEESSCCGGGTEEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCc--------eeeeeeeccceeeEEEEccCCHHhCcEEE
Confidence            47777777776665555 99999999987 8999999 11111        00001112234468999999999999999


Q ss_pred             EEEec
Q psy3718         130 CEIKS  134 (543)
Q Consensus       130 C~a~n  134 (543)
                      |.|+|
T Consensus        71 C~a~N   75 (75)
T PF13927_consen   71 CIASN   75 (75)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99987

...

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.69  E-value=7.4e-08  Score=70.73  Aligned_cols=66  Identities=23%  Similarity=0.428  Sum_probs=53.9

Q ss_pred             ceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718          59 RNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      .+..+.+|+++.|.|...+. .+.+.|++++.++..  +.++...    .+    .|.|.+++++|+|.|.|.+.-.
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~--~~r~~~~----~~----GLlI~~~~~~dsG~Y~C~s~E~   69 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNA--QFSYRVG----TD----GLLILVTSPEHSGTYRCYSEEE   69 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCC--CcceEEe----CC----CCEEEECCHhhCEEEEEEEecC
Confidence            56789999999999999876 569999999999864  3455433    23    3889999999999999999753

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=98.65  E-value=5.3e-08  Score=71.85  Aligned_cols=36  Identities=14%  Similarity=-0.013  Sum_probs=33.2

Q ss_pred             cCceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCC
Q psy3718          17 GRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPP   52 (543)
Q Consensus        17 ~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p   52 (543)
                      .+|+|+|.|    |+|.|+|.|.|.++.. +++.|.|+.||
T Consensus        45 ~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~pP   85 (85)
T cd05853          45 SAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGPP   85 (85)
T ss_pred             CCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecCC
Confidence            457999999    9999999999999996 78999999998

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.65  E-value=2.1e-07  Score=69.20  Aligned_cols=63  Identities=30%  Similarity=0.644  Sum_probs=45.7

Q ss_pred             CeEEEEEeec-cCCceEEEccCCeecCCCCCCceEEeeeecCCC----ceeeEEEEeeecCCCccEEEEEecc
Q psy3718          68 PSVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEILPNG----VLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        68 ~~~l~C~~~g-~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      +++|.|.+.| .|.+.|.|+|+|+++...   ....  ....++    ..+.|.|.....+|.|.|+|.|.|.
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~---~~~~--~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~   68 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGA---TYSK--ELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNE   68 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCc---eeee--eEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCc
Confidence            4689999987 688999999999988522   1111  111222    2357888877788899999999996

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.63  E-value=1.1e-07  Score=71.74  Aligned_cols=69  Identities=19%  Similarity=0.410  Sum_probs=50.8

Q ss_pred             ceeEeecCCCeEEEEEee-----------ccCCceEEEccCCeecCCCCC-----CceEEeeeecCCCceeeEEEEeeec
Q psy3718          59 RNQTSRRGEPSVLQCEAK-----------GEKPIGILWNMNNKRLDPKSD-----NRYTIREEILPNGVLSDLSIKRTER  122 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~-----------g~p~~~i~W~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~L~i~~~~~  122 (543)
                      ....+.+|+++.|.|...           ......+.|+|++..+.....     .|+....        ..|.|.++..
T Consensus         8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~--------~~Lwf~Pa~~   79 (104)
T cd05896           8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE--------DSIWFRPAEL   79 (104)
T ss_pred             eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC--------CEEEEEeCCh
Confidence            346788999999999972           122358999999865543221     2333332        3799999999


Q ss_pred             CCCccEEEEEecc
Q psy3718         123 GDSALFTCEIKSQ  135 (543)
Q Consensus       123 ~D~G~Y~C~a~n~  135 (543)
                      +|+|.|+|++.|.
T Consensus        80 eDSG~Y~C~~rN~   92 (104)
T cd05896          80 QDSGLYTCVLRNS   92 (104)
T ss_pred             hhCeEEEEEECCC
Confidence            9999999999996

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.61  E-value=1.3e-07  Score=74.80  Aligned_cols=78  Identities=18%  Similarity=0.326  Sum_probs=57.9

Q ss_pred             eecceeEeecCCCeEEEEEeeccCCceEEEccCCe--ec----------CCCCCCceEEeeeecCCCceeeEEEEeeecC
Q psy3718          56 IKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNK--RL----------DPKSDNRYTIREEILPNGVLSDLSIKRTERG  123 (543)
Q Consensus        56 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~--~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  123 (543)
                      ..|..+.+.+|++++|.|.+.+.+...+.|+|...  ..          ......++.+...  ......+|.|.+++.+
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~~~~~   80 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLD--KSRKSSSLHISAAQLS   80 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEc--ccCCEEEEEECCCCHH
Confidence            45678889999999999999988888999997431  10          0013345555432  2235578999999999


Q ss_pred             CCccEEEEEecc
Q psy3718         124 DSALFTCEIKSQ  135 (543)
Q Consensus       124 D~G~Y~C~a~n~  135 (543)
                      |+|.|.|.+.+.
T Consensus        81 DsG~Y~C~~~~~   92 (109)
T cd04983          81 DSAVYFCALSES   92 (109)
T ss_pred             HCEEEEEEEecC
Confidence            999999999874

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=98.58  E-value=9.5e-08  Score=68.81  Aligned_cols=47  Identities=13%  Similarity=-0.024  Sum_probs=37.0

Q ss_pred             ccEEEeecCC------CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGFN------PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~~------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      |.++|++...      ++.++.+|+|.|.+    |+|.|+|.|.|..|.. +++.|.|
T Consensus        16 p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852          16 PKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            5678887432      33445789999999    9999999999999997 5677765

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.54  E-value=2.3e-07  Score=70.31  Aligned_cols=74  Identities=14%  Similarity=0.200  Sum_probs=55.7

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC  130 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  130 (543)
                      .|.+...|+ ..|.+|++++|.|... .+...+.|+|+|........         ...+....+.|.+++.+|+|.|+|
T Consensus         2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~---------~~~~~~~~f~i~~v~~~~~G~Y~C   70 (91)
T cd05751           2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKP---------PEPQNKAKFFIPSMKREHAGRYRC   70 (91)
T ss_pred             CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccccc---------CCCceeEEEEccCCChhHCEEEEE
Confidence            366666664 4778999999999886 56678999999986532110         112334679999999999999999


Q ss_pred             EEecc
Q psy3718         131 EIKSQ  135 (543)
Q Consensus       131 ~a~n~  135 (543)
                      ...+.
T Consensus        71 ~~~~~   75 (91)
T cd05751          71 YYRSG   75 (91)
T ss_pred             EEECC
Confidence            99985

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.53  E-value=2.2e-07  Score=82.95  Aligned_cols=80  Identities=24%  Similarity=0.364  Sum_probs=54.0

Q ss_pred             cceeEeecCCCeEEEEEeeccC-----------CceEEEccCCeecCCC-CCCc---eEEeeeecCCCceeeEEEEeeec
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGEK-----------PIGILWNMNNKRLDPK-SDNR---YTIREEILPNGVLSDLSIKRTER  122 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~p-----------~~~i~W~~~~~~i~~~-~~~~---~~~~~~~~~~~~~~~L~i~~~~~  122 (543)
                      +..+.+.+|+++.|.|.+.+.|           .+.+.|+|++...-.. .+.+   ..+......+ ...+|.|.+++.
T Consensus        29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~-r~~~L~I~~v~~  107 (227)
T PHA02826         29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGD-RSENLWIGNVIN  107 (227)
T ss_pred             cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceec-CCCeEEECCCCh
Confidence            4567889999999999998754           3599999987652110 1111   0000000011 124799999999


Q ss_pred             CCCccEEEEEecccce
Q psy3718         123 GDSALFTCEIKSQKIS  138 (543)
Q Consensus       123 ~D~G~Y~C~a~n~~~s  138 (543)
                      +|+|.|+|.|+|..+.
T Consensus       108 ~DsG~Y~C~a~N~~~~  123 (227)
T PHA02826        108 IDEGIYICTISSGNIC  123 (227)
T ss_pred             HHCEEEEEEEEECCcc
Confidence            9999999999997655

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.53  E-value=2.8e-07  Score=72.87  Aligned_cols=76  Identities=22%  Similarity=0.379  Sum_probs=55.1

Q ss_pred             eecceeEeecCCCeEEEEEeeccCCceEEEccCCe--ecC--------------CCCCCceEEeeeecCCCceeeEEEEe
Q psy3718          56 IKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNK--RLD--------------PKSDNRYTIREEILPNGVLSDLSIKR  119 (543)
Q Consensus        56 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~--~i~--------------~~~~~~~~~~~~~~~~~~~~~L~i~~  119 (543)
                      ..|..+.+.+|++++|.|.+.+ +...+.|+|...  .+.              .....++.+...   +....+|.|.+
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~L~I~~   78 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRP---SLTRSSLTIKS   78 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECc---CCCccEEEECC
Confidence            4567889999999999999988 678999998532  111              011234443321   22346899999


Q ss_pred             eecCCCccEEEEEecc
Q psy3718         120 TERGDSALFTCEIKSQ  135 (543)
Q Consensus       120 ~~~~D~G~Y~C~a~n~  135 (543)
                      ++++|+|.|.|.+.+.
T Consensus        79 ~~~~Dsg~Y~Ca~~~~   94 (110)
T cd05899          79 AEPEDSAVYLCASSLG   94 (110)
T ss_pred             CChhhCEEEEEEeeCC
Confidence            9999999999999874

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.46  E-value=7.3e-07  Score=69.97  Aligned_cols=77  Identities=19%  Similarity=0.355  Sum_probs=54.3

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccC-CceEEEccCC--ee---c-------CCCCCCceEEeeeecCCCceeeEEEEee
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEK-PIGILWNMNN--KR---L-------DPKSDNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p-~~~i~W~~~~--~~---i-------~~~~~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      +...|..+.+.+|++++|.|.+.+.. ...+.|+|..  ..   |       ......++.+.    .++....|.|.++
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~----~~~~~~~L~I~~~   78 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGS----GSGTDFTLTISRV   78 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEe----ccCCEEEEEECCC
Confidence            34457778899999999999998765 5789999742  21   1       00112344432    2234467999999


Q ss_pred             ecCCCccEEEEEec
Q psy3718         121 ERGDSALFTCEIKS  134 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n  134 (543)
                      +++|+|.|.|.+.+
T Consensus        79 ~~~Dsg~Y~Ca~~~   92 (106)
T cd04980          79 EPEDAAVYYCQQYG   92 (106)
T ss_pred             ChHHCEEEEEEEeC
Confidence            99999999999876

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.44  E-value=6.3e-07  Score=69.23  Aligned_cols=86  Identities=23%  Similarity=0.341  Sum_probs=55.5

Q ss_pred             eecceeEeecCCCeEEEEEeeccCCceEEEccCCeecC--------CC-CC----CceEEeeeecCCCceeeEEEEeeec
Q psy3718          56 IKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLD--------PK-SD----NRYTIREEILPNGVLSDLSIKRTER  122 (543)
Q Consensus        56 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~--------~~-~~----~~~~~~~~~~~~~~~~~L~i~~~~~  122 (543)
                      +.+-...+.+|+++.|.|...-.+...+.|+|......        .. ..    ..+.-+..+..+|   +|.|.+++.
T Consensus         3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~~   79 (105)
T cd05774           3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVTQ   79 (105)
T ss_pred             EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCCc
Confidence            44555667899999999986544456999999632110        00 00    0111122233444   899999999


Q ss_pred             CCCccEEEEEecccceeeeeee
Q psy3718         123 GDSALFTCEIKSQKISSQQMTY  144 (543)
Q Consensus       123 ~D~G~Y~C~a~n~~~sv~~~~~  144 (543)
                      +|+|.|+|.+.+.....++...
T Consensus        80 ~D~G~Y~~~v~~~~~~~~~~~v  101 (105)
T cd05774          80 KDTGFYTLQTITTNFQVEQATV  101 (105)
T ss_pred             ccCEEEEEEEEeCCccEEEEEE
Confidence            9999999999997654444443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.44  E-value=4.3e-07  Score=68.26  Aligned_cols=35  Identities=23%  Similarity=0.100  Sum_probs=30.7

Q ss_pred             ceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCCe
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPPE   53 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p~   53 (543)
                      ++|.|.+    |+|.|+|+|.|..|.. .++.|.|..+|.
T Consensus        47 s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P~   86 (88)
T cd05735          47 STLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPD   86 (88)
T ss_pred             EEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCCC
Confidence            5799987    9999999999999997 678999988763

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=98.43  E-value=4.2e-07  Score=67.76  Aligned_cols=35  Identities=14%  Similarity=0.008  Sum_probs=32.0

Q ss_pred             CceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCC
Q psy3718          18 RVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPP   52 (543)
Q Consensus        18 ~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p   52 (543)
                      .++|.|.+    |+|.|+|.|.|..|.. +++.|.|..||
T Consensus        46 ~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~P   85 (85)
T cd05854          46 IGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGPP   85 (85)
T ss_pred             EeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECCC
Confidence            57999999    9999999999999987 67899999887

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.41  E-value=1.8e-06  Score=68.08  Aligned_cols=77  Identities=17%  Similarity=0.244  Sum_probs=51.9

Q ss_pred             ecceeEeecCCCeEEEEEeecc----CCceEEEc---------------cCCeecC---CCCCCceEEeeeecCCCceee
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKGE----KPIGILWN---------------MNNKRLD---PKSDNRYTIREEILPNGVLSD  114 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g~----p~~~i~W~---------------~~~~~i~---~~~~~~~~~~~~~~~~~~~~~  114 (543)
                      .+..+.+..|++++|.|.....    +...|.|.               ++|....   ..-.+|+.+....  .....+
T Consensus         4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~--~~~daS   81 (116)
T cd05879           4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNP--SRKDGS   81 (116)
T ss_pred             ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCC--CcCeeE
Confidence            3556788999999999998764    34699993               2333321   0111244333221  123358


Q ss_pred             EEEEeeecCCCccEEEEEecc
Q psy3718         115 LSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus       115 L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      |.|.+++.+|.|+|+|.+.|.
T Consensus        82 I~I~nv~~sD~G~Y~C~v~n~  102 (116)
T cd05879          82 IVIHNLDYTDNGTFTCDVKNP  102 (116)
T ss_pred             EEEccCCcccCEEEEEEEEcC
Confidence            999999999999999999995

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=98.39  E-value=6.1e-06  Score=62.58  Aligned_cols=87  Identities=39%  Similarity=0.716  Sum_probs=64.1

Q ss_pred             CCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEE
Q psy3718         251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQ  330 (543)
Q Consensus       251 ~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~  330 (543)
                      +|.++.+......++.|.|.++...  .+.+..|.|.++...... +  ..+..  .......+.+.+|.|++.|.++|+
T Consensus         3 ~p~~~~~~~~~~~~~~v~W~~~~~~--~~~~~~y~v~~~~~~~~~-~--~~~~~--~~~~~~~~~i~~l~p~~~Y~~~v~   75 (93)
T cd00063           3 PPTNLRVTDVTSTSVTLSWTPPEDD--GGPITGYVVEYREKGSGD-W--KEVEV--TPGSETSYTLTGLKPGTEYEFRVR   75 (93)
T ss_pred             CCCCcEEEEecCCEEEEEECCCCCC--CCcceeEEEEEeeCCCCC-C--EEeec--cCCcccEEEEccccCCCEEEEEEE
Confidence            5667788888889999999998654  356789999998765222 2  22211  013567899999999999999999


Q ss_pred             EEeCCCCCCCCcce
Q psy3718         331 ALNKLGPGPMSEEV  344 (543)
Q Consensus       331 a~n~~G~s~~s~~~  344 (543)
                      |.+..|.|.++...
T Consensus        76 a~~~~~~~~~s~~~   89 (93)
T cd00063          76 AVNGGGESPPSESV   89 (93)
T ss_pred             EECCCccCCCcccc
Confidence            99988877666533

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.39  E-value=5.6e-07  Score=65.29  Aligned_cols=47  Identities=13%  Similarity=0.070  Sum_probs=36.6

Q ss_pred             ccEEEeecCC------CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGFN------PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~~------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      |.++|++...      +..+..+++|.|.+    |+|.|+|.|.|..|.. .++.|.|
T Consensus        17 p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745          17 PVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            6789987332      23345688999999    9999999999999986 5567765

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.38  E-value=9.4e-07  Score=64.05  Aligned_cols=47  Identities=17%  Similarity=0.136  Sum_probs=36.2

Q ss_pred             ccEEEeec-------CCCe-EEecCceEEEec----CCeEEEEEEecCCCCC--CCceEEE
Q psy3718           2 ENFFFYRG-------FNPR-ILLGRVLLPIGE----SSFHFDPELLNPSFNG--FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~-------~~~~-~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~--~s~~l~v   48 (543)
                      |.++|++.       .+.+ ....+|.|.|.+    |+|.|+|.|.|..|..  .++.|.|
T Consensus        13 p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738          13 PEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            57899874       2233 345678999999    9999999999999985  4567766

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=98.37  E-value=5e-07  Score=65.42  Aligned_cols=47  Identities=13%  Similarity=0.010  Sum_probs=35.4

Q ss_pred             ccEEEeecC------CCeEEe-cCc----eEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGF------NPRILL-GRV----LLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~------~~~~~~-~~g----~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      |.++|++..      ..++.+ .++    +|.|.+    |+|.|+|.|.|..|.. +++.|.|
T Consensus        13 P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893          13 PQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            678998853      234443 232    699999    9999999999999997 5677765

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.37  E-value=1.3e-06  Score=66.55  Aligned_cols=74  Identities=26%  Similarity=0.337  Sum_probs=50.0

Q ss_pred             CCCeEEEEEeeccCCceEEEccCCeecCCCC------------CCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEe
Q psy3718          66 GEPSVLQCEAKGEKPIGILWNMNNKRLDPKS------------DNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIK  133 (543)
Q Consensus        66 g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  133 (543)
                      |++++|.|.........+.|++.........            ...+.-+.....+   .+|.|.+++.+|+|.|.|.+.
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~v~   77 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN---GSLLIQNLTKEDSGTYTLQII   77 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC---ceEEEccCCchhcEEEEEEEE
Confidence            7899999999887778999998764432110            0111111111122   589999999999999999999


Q ss_pred             cccceeeee
Q psy3718         134 SQKISSQQM  142 (543)
Q Consensus       134 n~~~sv~~~  142 (543)
                      ...+.....
T Consensus        78 ~~~~~~~~~   86 (92)
T cd05741          78 STNGVTENA   86 (92)
T ss_pred             cCCCcEEEE
Confidence            875543333

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=98.35  E-value=8.9e-07  Score=66.60  Aligned_cols=48  Identities=10%  Similarity=0.024  Sum_probs=37.9

Q ss_pred             ccEEEeecCC-----CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718           2 ENFFFYRGFN-----PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS   49 (543)
Q Consensus         2 ~~~~~~~~~~-----~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~   49 (543)
                      |.++|++...     .++...++.|.|.+    |+|.|+|.|.|..|.. .++.|.|+
T Consensus        31 P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   88 (88)
T cd05851          31 PVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYVQ   88 (88)
T ss_pred             CEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEEC
Confidence            6789988532     24455677999999    9999999999999986 56777763

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.34  E-value=8.8e-07  Score=63.28  Aligned_cols=47  Identities=13%  Similarity=-0.040  Sum_probs=36.5

Q ss_pred             ccEEEeecC-----CCeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGF-----NPRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~-----~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      |.++|++..     +++....+++|.|.+    |+|.|+|.|.|..|.. .++.|.|
T Consensus        13 p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725          13 PTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            578998853     234445678999999    9999999999999986 4566654

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=98.33  E-value=8e-07  Score=64.23  Aligned_cols=47  Identities=19%  Similarity=0.103  Sum_probs=34.6

Q ss_pred             ccEEEeecC------CCeEEe-cC--c--eEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGF------NPRILL-GR--V--LLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~------~~~~~~-~~--g--~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      |.++|++..      ..|+.+ .+  |  +|.|.+    |+|.|+|.|.|..|.. .++.|.|
T Consensus        13 P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892          13 PKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            678898732      233332 22  3  799999    9999999999999987 5677765

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.33  E-value=8.8e-07  Score=63.59  Aligned_cols=47  Identities=9%  Similarity=-0.122  Sum_probs=36.5

Q ss_pred             ccEEEeecC------CCeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGF------NPRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~------~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      |.++|++..      +.+.+..++.|.|.+    |+|.|+|.|.|..|.. +++.|.|
T Consensus        14 p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723          14 PTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            678898743      233445678899988    9999999999999986 5677764

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.33  E-value=1.1e-06  Score=64.15  Aligned_cols=47  Identities=15%  Similarity=0.016  Sum_probs=37.2

Q ss_pred             ccEEEeecC--------CCeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGF--------NPRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~--------~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      |.++|++..        +.++.+.+++|.|.+    |+|.|+|.|.|..|.. +++.|.|
T Consensus        16 p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867          16 PNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            568898732        125566789999999    9999999999999986 5577766

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.31  E-value=2.1e-06  Score=67.33  Aligned_cols=73  Identities=21%  Similarity=0.378  Sum_probs=52.3

Q ss_pred             EeecCCCeEEEEEeecc-CCceEEEccCCe--e---c----------CCCCCCceEEeeeecCCCceeeEEEEeeecCCC
Q psy3718          62 TSRRGEPSVLQCEAKGE-KPIGILWNMNNK--R---L----------DPKSDNRYTIREEILPNGVLSDLSIKRTERGDS  125 (543)
Q Consensus        62 ~v~~g~~~~l~C~~~g~-p~~~i~W~~~~~--~---i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~  125 (543)
                      .+.+|++++|.|.+.+. +...+.|+|...  .   +          ......++.+...  ......+|+|.+++.+|+
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~sL~I~~v~~~D~   79 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRD--SSKSSFTLTISSLQPEDS   79 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEe--ccCCEEEEEECCCCHHHC
Confidence            57899999999999986 678999998432  1   1          1112345544432  122346899999999999


Q ss_pred             ccEEEEEeccc
Q psy3718         126 ALFTCEIKSQK  136 (543)
Q Consensus       126 G~Y~C~a~n~~  136 (543)
                      |.|.|.+.+..
T Consensus        80 G~Y~C~v~~~~   90 (105)
T cd00099          80 AVYYCAVSLSG   90 (105)
T ss_pred             EEEEEEEecCC
Confidence            99999999853

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.30  E-value=3.4e-06  Score=67.48  Aligned_cols=76  Identities=21%  Similarity=0.365  Sum_probs=54.1

Q ss_pred             ecceeEeecCCCeEEEEEeec--cCCceEEEccC--Ceec------C---------CCCCCceEEeeeecCCCceeeEEE
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKG--EKPIGILWNMN--NKRL------D---------PKSDNRYTIREEILPNGVLSDLSI  117 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g--~p~~~i~W~~~--~~~i------~---------~~~~~~~~~~~~~~~~~~~~~L~i  117 (543)
                      .|..+.+.+|++++|.|.+.+  .+...+.|+|.  +...      .         .....++.+...  .......|.|
T Consensus         4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I   81 (116)
T cd04982           4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKD--VGKSTSTLTI   81 (116)
T ss_pred             cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEE--CCCCEEEEEE
Confidence            456678899999999999987  67789999984  2211      0         011345554322  1114568999


Q ss_pred             EeeecCCCccEEEEEec
Q psy3718         118 KRTERGDSALFTCEIKS  134 (543)
Q Consensus       118 ~~~~~~D~G~Y~C~a~n  134 (543)
                      .+++.+|+|.|.|.+..
T Consensus        82 ~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          82 QNLEKEDSATYYCAYWE   98 (116)
T ss_pred             EECCHHHCEEEEEEEec
Confidence            99999999999999875

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.29  E-value=8.2e-07  Score=62.31  Aligned_cols=47  Identities=17%  Similarity=0.018  Sum_probs=33.5

Q ss_pred             CccEEEeecCCCeE-EecCceEEEec----CCeEEEEEEecCCCCC-CCceEE
Q psy3718           1 MENFFFYRGFNPRI-LLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLL   47 (543)
Q Consensus         1 ~~~~~~~~~~~~~~-~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~   47 (543)
                      .|.++||++..... ....+.|.|.+    |+|.|+|.|.|..|.. .+..|.
T Consensus        12 ~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~   64 (67)
T cd05863          12 PPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLE   64 (67)
T ss_pred             CCEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEE
Confidence            37889998532211 12456999999    9999999999999974 344443

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.29  E-value=1.4e-06  Score=65.98  Aligned_cols=30  Identities=10%  Similarity=-0.084  Sum_probs=26.9

Q ss_pred             ceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      +.|.|.+    |+|.|+|.|.|..|.. +++.|.|
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V   89 (90)
T cd04974          55 EVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV   89 (90)
T ss_pred             ceEEEeccccccCcEEEEEeecccCcccCCEEEEe
Confidence            5899998    9999999999999997 6788887

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.28  E-value=4.5e-06  Score=66.24  Aligned_cols=78  Identities=19%  Similarity=0.328  Sum_probs=49.3

Q ss_pred             cceeEeecCCCeEEEEEeeccC----CceEEEccC----Cee--cC-------CCCCCceEEeeeec--CCCceeeEEEE
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGEK----PIGILWNMN----NKR--LD-------PKSDNRYTIREEIL--PNGVLSDLSIK  118 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~p----~~~i~W~~~----~~~--i~-------~~~~~~~~~~~~~~--~~~~~~~L~i~  118 (543)
                      |..+.+.+|++++|.|.....+    ...|.|++.    +.+  +.       .....++.-+-...  ......+|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            5678889999999999987543    246999741    221  10       00111221111100  11233579999


Q ss_pred             eeecCCCccEEEEEecc
Q psy3718         119 RTERGDSALFTCEIKSQ  135 (543)
Q Consensus       119 ~~~~~D~G~Y~C~a~n~  135 (543)
                      +++.+|+|.|.|.+.|.
T Consensus        85 ~v~~~D~G~Y~C~v~~~  101 (115)
T cd05880          85 QLQPTDNGTYTCQVKNP  101 (115)
T ss_pred             eCChhhCEEEEEEEEeC
Confidence            99999999999999985

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.27  E-value=1.5e-06  Score=64.97  Aligned_cols=36  Identities=14%  Similarity=-0.000  Sum_probs=32.4

Q ss_pred             cCceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCC
Q psy3718          17 GRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPP   52 (543)
Q Consensus        17 ~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p   52 (543)
                      .+|+|.|.+    |+|.|+|.|.|..|.. +++.|.|..||
T Consensus        45 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~pP   85 (85)
T cd04970          45 SNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGPP   85 (85)
T ss_pred             ccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECCC
Confidence            467999999    9999999999999986 67899999887

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.27  E-value=1.8e-06  Score=65.38  Aligned_cols=50  Identities=14%  Similarity=-0.037  Sum_probs=38.2

Q ss_pred             ccEEEeecCC-------------CeEE-ecCceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCC
Q psy3718           2 ENFFFYRGFN-------------PRIL-LGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAP   51 (543)
Q Consensus         2 ~~~~~~~~~~-------------~~~~-~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~   51 (543)
                      |.++|++...             .++. ..+++|.|.+    |+|.|+|.|.|..|.. .++.|.|..+
T Consensus        16 p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~   84 (90)
T cd05726          16 PAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTDV   84 (90)
T ss_pred             CEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEeec
Confidence            5678876432             2333 3478999999    9999999999999986 5688888543

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.26  E-value=1.6e-06  Score=62.22  Aligned_cols=47  Identities=9%  Similarity=-0.068  Sum_probs=35.8

Q ss_pred             ccEEEeecCC------CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGFN------PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~~------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      |.+.|++..+      ......+++|.|.+    |+|.|+|.|.|..|.. .++.|.|
T Consensus        13 P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876          13 PEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            6789987543      12234568999999    9999999999999986 4566665

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=98.26  E-value=1.6e-06  Score=62.71  Aligned_cols=47  Identities=11%  Similarity=-0.137  Sum_probs=36.0

Q ss_pred             ccEEEeecC------CCeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGF------NPRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~------~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      +.++|++..      ++..+..+++|.|.+    |+|.|+|.|.|..|.. .++.|.|
T Consensus        16 p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969          16 PTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            467888743      233445678999999    9999999999999986 5567664

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=98.24  E-value=2.4e-06  Score=65.64  Aligned_cols=51  Identities=16%  Similarity=-0.005  Sum_probs=39.2

Q ss_pred             ccEEEeecCC-----CeEEe----cCceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCC
Q psy3718           2 ENFFFYRGFN-----PRILL----GRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPP   52 (543)
Q Consensus         2 ~~~~~~~~~~-----~~~~~----~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p   52 (543)
                      ++++|+++.+     .++.+    ..+.|.|.+    |+|.|+|.|.|..|.. +++.|.|..+|
T Consensus        30 p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P   94 (98)
T cd05762          30 ITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKP   94 (98)
T ss_pred             CceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCC
Confidence            5678887432     23322    246899999    9999999999999997 67899998776

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.22  E-value=4.5e-06  Score=61.42  Aligned_cols=43  Identities=19%  Similarity=0.032  Sum_probs=32.9

Q ss_pred             ccEEEeecC-------------CCeE-EecCceEEEec----CCeEEEEEEecCCCCCCCc
Q psy3718           2 ENFFFYRGF-------------NPRI-LLGRVLLPIGE----SSFHFDPELLNPSFNGFPP   44 (543)
Q Consensus         2 ~~~~~~~~~-------------~~~~-~~~~g~L~I~~----D~G~Y~C~a~n~~g~~~s~   44 (543)
                      |++.|++..             +.++ +..+++|.|.+    |+|.|+|.|.|..|...+.
T Consensus        13 P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~   73 (79)
T cd05734          13 PTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASK   73 (79)
T ss_pred             CEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCce
Confidence            678888742             2233 35678999999    9999999999999987543

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>KOG3515|consensus

Probab=98.21  E-value=7.2e-05  Score=76.46  Aligned_cols=109  Identities=11%  Similarity=0.062  Sum_probs=76.0

Q ss_pred             CCeEEEEEEecCCCCC-CC--ceEEEeCCCeEEe-ecceeEeecCCCeEEEEEeeccCC-ceEEEccCCeecCCCCCCce
Q psy3718          26 SSFHFDPELLNPSFNG-FP--PLLLSSAPPEFEI-KLRNQTSRRGEPSVLQCEAKGEKP-IGILWNMNNKRLDPKSDNRY  100 (543)
Q Consensus        26 D~G~Y~C~a~n~~g~~-~s--~~l~v~~~p~~~~-~~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~~~~~i~~~~~~~~  100 (543)
                      |.|.|+|.|.|..... .+  ..|.|..+|.|.. ..-.....+++.....-.+.+.|. +++.|.+++-++.......+
T Consensus       372 ~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~  451 (741)
T KOG3515|consen  372 DGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVV  451 (741)
T ss_pred             cCceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceE
Confidence            9999999999988553 22  3555666665544 344455555665555555556654 89999999988876666555


Q ss_pred             EEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceee
Q psy3718         101 TIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ  140 (543)
Q Consensus       101 ~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~  140 (543)
                      .+-    ..+  .-+.+.++..+|.|.|.|.|+|..|.++
T Consensus       452 ~v~----~~~--~~~s~~~v~~~d~g~y~~tatns~gg~~  485 (741)
T KOG3515|consen  452 RVG----AGA--GLGSGVNVSRSDGGSYGLTATNSPGGAQ  485 (741)
T ss_pred             Eee----ccc--cccccceeeeccCCcceeeeccCCCcee
Confidence            542    222  2355677999999999999999988754

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.20  E-value=7.9e-06  Score=59.35  Aligned_cols=66  Identities=26%  Similarity=0.254  Sum_probs=46.2

Q ss_pred             CeEEEEEeecc-CCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccc
Q psy3718          68 PSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQK  136 (543)
Q Consensus        68 ~~~l~C~~~g~-p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  136 (543)
                      .+.|.|.+.|. |.+.|.|+++++++.....  . ...........+.|.|..-...|...|+|.|.|..
T Consensus         1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~--~-~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~   67 (82)
T cd05883           1 EIELNCTAMASKPAATIRWFKGNKELTGKST--V-EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA   67 (82)
T ss_pred             CEEEEEEecCCCCCCEEEEEECCEECcCccc--c-eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence            36899999884 7899999999999864311  1 00010122345678887777777789999999963

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.20  E-value=3.3e-06  Score=61.41  Aligned_cols=47  Identities=9%  Similarity=-0.080  Sum_probs=35.5

Q ss_pred             ccEEEeecCC--------CeEE--ecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGFN--------PRIL--LGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~~--------~~~~--~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      |.++|++...        .++.  ..++.|.|.+    |+|.|+|.|.|..|.. .++.|.|
T Consensus        13 P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763          13 PQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            6789988542        1222  2357899999    9999999999999986 5677776

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.19  E-value=3.2e-06  Score=64.82  Aligned_cols=80  Identities=15%  Similarity=0.168  Sum_probs=51.7

Q ss_pred             ecCCCeEEEEEeec-cCCceEEEccCCeecCCCCC-----------CceEEeeeecCCCceeeEEEEeeecCCCccEEEE
Q psy3718          64 RRGEPSVLQCEAKG-EKPIGILWNMNNKRLDPKSD-----------NRYTIREEILPNGVLSDLSIKRTERGDSALFTCE  131 (543)
Q Consensus        64 ~~g~~~~l~C~~~g-~p~~~i~W~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~  131 (543)
                      ..|++++|.|.... .....+.|+|....+.....           .++.-+-..  +....+|+|.+++.+|+|.|.|.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~--~~~~~sL~I~~~~~~DsG~Y~c~   79 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNF--SQNDYSLQISNLKMEDAGSYRAE   79 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEe--cCCceeEEECCCchHHCEEEEEE
Confidence            46999999998865 45578999987543211110           111111111  22236899999999999999999


Q ss_pred             Eecccceeeeeeee
Q psy3718         132 IKSQKISSQQMTYE  145 (543)
Q Consensus       132 a~n~~~sv~~~~~~  145 (543)
                      +.+..+......+.
T Consensus        80 v~~~~~~~~~~~f~   93 (97)
T cd05775          80 INTKNGVTITKEFT   93 (97)
T ss_pred             EEcCCCCeEEEEEE
Confidence            99876554344333

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=98.18  E-value=2.4e-06  Score=65.14  Aligned_cols=47  Identities=11%  Similarity=0.010  Sum_probs=33.0

Q ss_pred             ccEEEeecCCC-------eEEe-cC----ceEEEec----CCeEEEEEEecCC-CCC-CCceEEE
Q psy3718           2 ENFFFYRGFNP-------RILL-GR----VLLPIGE----SSFHFDPELLNPS-FNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~~~-------~~~~-~~----g~L~I~~----D~G~Y~C~a~n~~-g~~-~s~~l~v   48 (543)
                      |+++|++.++.       ++.+ .+    ++|.|.+    |+|.|+|.|.|.+ |.. +++.|.|
T Consensus        31 p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          31 KDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI   95 (96)
T ss_pred             CEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence            48899873332       3322 22    5899999    9999999999997 554 5566665

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.18  E-value=2.7e-06  Score=60.63  Aligned_cols=45  Identities=9%  Similarity=-0.037  Sum_probs=33.8

Q ss_pred             ccEEEeecC------CCeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceE
Q psy3718           2 ENFFFYRGF------NPRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLL   46 (543)
Q Consensus         2 ~~~~~~~~~------~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l   46 (543)
                      |.++|+++.      .++.+..++.|.|.+    |+|.|+|.|.|..|.. .++.|
T Consensus        13 p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746          13 PTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            568898742      233345578999999    9999999999999986 34444

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.18  E-value=3.4e-06  Score=64.75  Aligned_cols=70  Identities=23%  Similarity=0.394  Sum_probs=47.1

Q ss_pred             ecCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCcee---eEEEEeeecCCCccEEEEEeccc
Q psy3718          64 RRGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLS---DLSIKRTERGDSALFTCEIKSQK  136 (543)
Q Consensus        64 ~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~a~n~~  136 (543)
                      ..|+.++|.|.+.|. |. ++|.|++||..+..... .....  ...++...   .|.|....-.|.|.|+|.|.+..
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~-~~~~~--~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~   85 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVT-TTPPV--PNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHES   85 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCcee-ccccc--cCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCC
Confidence            579999999999997 64 79999999999853321 01111  11233323   35554444459999999999963

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.18  E-value=1.2e-05  Score=64.14  Aligned_cols=77  Identities=18%  Similarity=0.407  Sum_probs=49.5

Q ss_pred             ecceeEeecCCCeEEEEEeeccC----CceEEEccCCe------ec-CCC-------CCCce----EEeeeecCCCceee
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKGEK----PIGILWNMNNK------RL-DPK-------SDNRY----TIREEILPNGVLSD  114 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g~p----~~~i~W~~~~~------~i-~~~-------~~~~~----~~~~~~~~~~~~~~  114 (543)
                      .|..+.+.+|++++|.|......    ...+.|++...      .+ ...       ...++    .+...  ......+
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~--~~~~~~s   81 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGN--PSRKDAS   81 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecC--CcCCeeE
Confidence            36677889999999999986542    25799976321      00 000       01122    11111  1122367


Q ss_pred             EEEEeeecCCCccEEEEEecc
Q psy3718         115 LSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus       115 L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      |+|.+++.+|+|.|.|.+.|.
T Consensus        82 L~I~~v~~~D~G~Y~C~v~~~  102 (116)
T cd05715          82 IVIHNLQFTDNGTYTCDVKNP  102 (116)
T ss_pred             EEEeeCCcccCEEEEEEEEeC
Confidence            999999999999999999985

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.17  E-value=8.1e-06  Score=63.02  Aligned_cols=69  Identities=16%  Similarity=0.246  Sum_probs=44.2

Q ss_pred             CCeEEEEEeeccC---CceEEEccCCee-------c--------CCCCCCceEEeeeecCCCceeeEEEEeeecCCCccE
Q psy3718          67 EPSVLQCEAKGEK---PIGILWNMNNKR-------L--------DPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALF  128 (543)
Q Consensus        67 ~~~~l~C~~~g~p---~~~i~W~~~~~~-------i--------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y  128 (543)
                      ++++|.|.....+   ...|.|+|....       .        ......|..+...   .-...+|.|.+++.+|+|.|
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~sL~I~~v~~~D~G~Y   77 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNS---SLEDATISISNLRLEDEGNY   77 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCC---CCCceEEEEccCCcccCEEE
Confidence            5789999998764   458999986431       0        0001122222111   00345899999999999999


Q ss_pred             EEEEec-ccce
Q psy3718         129 TCEIKS-QKIS  138 (543)
Q Consensus       129 ~C~a~n-~~~s  138 (543)
                      .|.+.+ ..|+
T Consensus        78 ~C~v~~~~~g~   88 (98)
T cd05718          78 ICEFATFPQGN   88 (98)
T ss_pred             EEEEEeCCCCc
Confidence            999875 4444

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.17  E-value=6.1e-06  Score=63.62  Aligned_cols=69  Identities=16%  Similarity=0.317  Sum_probs=48.7

Q ss_pred             EeecCCCeEEEEEeecc--CCceEEEccCC--eecC----------CCCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          62 TSRRGEPSVLQCEAKGE--KPIGILWNMNN--KRLD----------PKSDNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        62 ~v~~g~~~~l~C~~~g~--p~~~i~W~~~~--~~i~----------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      .+.+|++++|.|...+.  ....+.|+|..  ....          .....++.+.    .++...+|.|.+++++|+|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~----~~~~~~~L~I~~~~~~Dsg~   77 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGS----KSGNTASLTISGAQTEDEAD   77 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEE----ccCCEEEEEECCCChhhCEE
Confidence            57899999999998775  55789998732  2211          0112345443    23345689999999999999


Q ss_pred             EEEEEec
Q psy3718         128 FTCEIKS  134 (543)
Q Consensus       128 Y~C~a~n  134 (543)
                      |.|.+.+
T Consensus        78 Y~C~~~~   84 (98)
T cd04984          78 YYCQVWD   84 (98)
T ss_pred             EEEEEcc
Confidence            9999876

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.17  E-value=7.7e-06  Score=65.35  Aligned_cols=78  Identities=18%  Similarity=0.329  Sum_probs=54.9

Q ss_pred             EeecceeEeecCCCeEEEEEeecc-CCceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEEEEeee
Q psy3718          55 EIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        55 ~~~~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      ...|..+.+.+|++++|.|..... ....+.|+|-  +..+          ......|+.+...  ......+|.|.+++
T Consensus         3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~--~~~~~~sL~I~~~~   80 (116)
T cd07706           3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQ--KAQKSISLTISALQ   80 (116)
T ss_pred             EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEe--ccCCEEEEEECCCC
Confidence            445677889999999999998764 4578999973  2211          0112345555422  12334689999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      .+|+|.|.|.+..
T Consensus        81 ~~Dsg~Y~C~~~~   93 (116)
T cd07706          81 LEDSAKYFCALST   93 (116)
T ss_pred             HHHCEEEEEEEEC
Confidence            9999999999986

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.16  E-value=1.1e-05  Score=62.52  Aligned_cols=72  Identities=18%  Similarity=0.291  Sum_probs=44.2

Q ss_pred             CCCeEEEEEeecc---CCceEEEccCCe--ec---------CC----CCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          66 GEPSVLQCEAKGE---KPIGILWNMNNK--RL---------DP----KSDNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        66 g~~~~l~C~~~g~---p~~~i~W~~~~~--~i---------~~----~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      |++++|.|.....   ....+.|++...  .+         ..    .-..|+.+.... ......+|.|.+++.+|+|.
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~~sL~I~~v~~~D~G~   79 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDA-IAEGSVALRIHNVRASDEGL   79 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeeccc-ccCCcEEEEEEcCChhhCEE
Confidence            7899999998632   224788887542  11         00    001222221111 11233689999999999999


Q ss_pred             EEEEEecccce
Q psy3718         128 FTCEIKSQKIS  138 (543)
Q Consensus       128 Y~C~a~n~~~s  138 (543)
                      |.|.+.|..+.
T Consensus        80 Y~C~v~~~~~~   90 (100)
T cd05713          80 YTCFFQSDGFY   90 (100)
T ss_pred             EEEEEecCCcE
Confidence            99999986443

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.16  E-value=3.8e-06  Score=59.70  Aligned_cols=47  Identities=17%  Similarity=0.106  Sum_probs=33.5

Q ss_pred             CccEEEeecCC----CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEE
Q psy3718           1 MENFFFYRGFN----PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLL   47 (543)
Q Consensus         1 ~~~~~~~~~~~----~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~   47 (543)
                      .|.++|++...    +.....++.|.|.+    |+|.|+|.|.|..|.. .+..+.
T Consensus        12 ~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~   67 (70)
T cd05864          12 PPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQ   67 (70)
T ss_pred             CCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEE
Confidence            46789988432    12223456899999    9999999999999976 444443

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.14  E-value=1.6e-05  Score=63.33  Aligned_cols=79  Identities=19%  Similarity=0.345  Sum_probs=54.2

Q ss_pred             EeecceeEeecCCCeEEEEEee-ccCCceEEEccCCe-----ecC------------CCCCCceEEeeeecCCCceeeEE
Q psy3718          55 EIKLRNQTSRRGEPSVLQCEAK-GEKPIGILWNMNNK-----RLD------------PKSDNRYTIREEILPNGVLSDLS  116 (543)
Q Consensus        55 ~~~~~~~~v~~g~~~~l~C~~~-g~p~~~i~W~~~~~-----~i~------------~~~~~~~~~~~~~~~~~~~~~L~  116 (543)
                      ...|..+.+.+|+++.|.|... ......+.|++...     .+.            .....++.+...  ......+|.
T Consensus         5 t~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~sL~   82 (114)
T PF07686_consen    5 TQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGN--GSQNNFSLT   82 (114)
T ss_dssp             EEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEE--TTTTEEEEE
T ss_pred             EEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeec--ccCCeEEEE
Confidence            3457778999999999999999 55667999998332     111            000122222211  122346799


Q ss_pred             EEeeecCCCccEEEEEecc
Q psy3718         117 IKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus       117 i~~~~~~D~G~Y~C~a~n~  135 (543)
                      |.+++.+|+|.|.|.+...
T Consensus        83 i~~l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   83 IKNLQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             ESSESGGGEEEEEEEEEES
T ss_pred             ECCCCcCcCEEEEEEEEEC
Confidence            9999999999999999885

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.14  E-value=4.8e-06  Score=63.22  Aligned_cols=42  Identities=12%  Similarity=-0.101  Sum_probs=33.8

Q ss_pred             ccEEEeecC------CCeEEecCceEEEec-----CCeEEEEEEecCCCCCCC
Q psy3718           2 ENFFFYRGF------NPRILLGRVLLPIGE-----SSFHFDPELLNPSFNGFP   43 (543)
Q Consensus         2 ~~~~~~~~~------~~~~~~~~g~L~I~~-----D~G~Y~C~a~n~~g~~~s   43 (543)
                      |+++|++..      +.++.+.+|.|.|.+     |+|.|+|.|.|..|...+
T Consensus        34 P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   86 (93)
T cd05849          34 PIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRS   86 (93)
T ss_pred             CEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence            678998743      245567789999975     999999999999998744

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.13  E-value=1.2e-05  Score=59.45  Aligned_cols=65  Identities=22%  Similarity=0.317  Sum_probs=42.1

Q ss_pred             CeEEEEEeecc-CCceEEEccCCeecCCCCCCceEEeeeecCCC---ceeeEEEEeeecCCCccEEEEEecccc
Q psy3718          68 PSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILPNG---VLSDLSIKRTERGDSALFTCEIKSQKI  137 (543)
Q Consensus        68 ~~~l~C~~~g~-p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~C~a~n~~~  137 (543)
                      .+.|.|.+.|. |.+.|.|+++++++...  ....   ....++   ..+.|.+......|.+.|+|.|.+...
T Consensus         1 ~~~L~C~~~~~~P~~~v~W~~~~~~l~~~--~~~~---~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l   69 (82)
T cd05761           1 EVELTCTSSGSKPAATIRWFKGDKELKGV--KLKE---EDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPAL   69 (82)
T ss_pred             CEEEEEEecCcCcCCeEEEEECCEEccCc--eeeE---ecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhc
Confidence            36899999875 88999999999998521  1111   111122   233455544445556799999999643

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.13  E-value=4.7e-06  Score=59.69  Aligned_cols=46  Identities=13%  Similarity=0.039  Sum_probs=34.2

Q ss_pred             ccEEEeecC-----CCeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEE
Q psy3718           2 ENFFFYRGF-----NPRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLL   47 (543)
Q Consensus         2 ~~~~~~~~~-----~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~   47 (543)
                      |.++|++..     +.+....+++|.|.+    |+|.|+|.|.|..|.. .+..+.
T Consensus        13 p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~   68 (71)
T cd04976          13 PEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFT   68 (71)
T ss_pred             CEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEE
Confidence            578898742     234456678999999    9999999999999874 333333

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=98.12  E-value=5.5e-06  Score=60.29  Aligned_cols=47  Identities=9%  Similarity=-0.101  Sum_probs=35.2

Q ss_pred             ccEEEeecCC--------CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGFN--------PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~~--------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      |.+.|++...        ......++.|.|.+    |+|.|+|.|.|..|.. +++.|.|
T Consensus        16 P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868          16 PSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            5788886321        12234556899888    9999999999999997 6778776

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>KOG4258|consensus

Probab=98.11  E-value=2.3e-05  Score=79.32  Aligned_cols=178  Identities=22%  Similarity=0.369  Sum_probs=116.9

Q ss_pred             CccceEEEEEEEEEcC--CCCC--CCCccEEEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEE
Q psy3718         214 EIIWKTYHIRIVAENE--IGSS--EPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYK  289 (543)
Q Consensus       214 ~~~w~~y~~~v~a~n~--~G~~--~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~  289 (543)
                      +-.||.|-|.|.+...  .+..  ..|....++|....|. +|..+-....++++|.|.|.+|...  +|.++.|.|.|.
T Consensus       573 LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~Ps-pPl~~ls~snsSsqi~l~W~pP~~p--NG~lt~Ylv~we  649 (1025)
T KOG4258|consen  573 LKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPS-PPLDVLSKSNSSSQILLKWKPPSQP--NGNLTHYLVVWE  649 (1025)
T ss_pred             CCccceeEEEEeeeehhhhccccccccceEEEEecCCCCC-CcchhhhccCcchheeEEecCCCCC--CCceeEEEEEEE
Confidence            3456999999988732  2221  2355667889888885 7777766777788999999999887  899999999887


Q ss_pred             EcCCCC--------------------------Cce-----------------E------------------------EEE
Q psy3718         290 ETSTDK--------------------------PFL-----------------F------------------------ETV  302 (543)
Q Consensus       290 ~~~~~~--------------------------~~~-----------------~------------------------~~~  302 (543)
                      ....+.                          +..                 +                        ..+
T Consensus       650 r~~~~~yl~~~nYC~~~~k~p~~~~~p~~~~ed~d~~~e~e~~~~~Cc~c~~~~~~~~~e~eea~~~~~FEd~L~n~i~v  729 (1025)
T KOG4258|consen  650 RQAEDGYLEQRNYCHKGLKLPIRADLPSFDSEDMDPLLEMEGHTGPCCSCPPTESYPQYEDEEASEQKTFEDFLHNAIFV  729 (1025)
T ss_pred             eccCCchHHHhccccccccccccccCCCCchhhcchhhhhccCCCCCCCCCcccccCchhhHHHHHHHHHhhhccceeee
Confidence            543210                          000                 0                        000


Q ss_pred             e-------------------------------------------eeccCCceeEEEECCCCCCCEEEEEEEEEeCCCC--
Q psy3718         303 D-------------------------------------------FSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGP--  337 (543)
Q Consensus       303 ~-------------------------------------------~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~--  337 (543)
                      .                                           ......+..++.+.+|+.++.|.+.++|.|..+.  
T Consensus       730 pr~~~~krk~l~~~~n~t~~~~~~~~~~p~t~~~t~p~ei~e~~p~~~n~n~~~~vi~~Lrh~tlY~i~l~aCnh~~~~~  809 (1025)
T KOG4258|consen  730 PRRPDRKRKSLDDVENCTRLAPTRKAEEPTTPPTTAPTEIEEPKPRLENGNKESYVISGLRHFTLYRIDLQACNHATPKC  809 (1025)
T ss_pred             cccCcccccccccccceeeccccccccCCCCCCCCCCccccccCcccccccchhhhhhccccchhhhhhHhhhccccccc
Confidence            0                                           0000123346788999999999999999998874  


Q ss_pred             --CCCCcceeeeccCCC-CCCCCCCcEEEEe-ccCeEEEEccCCCCCCCCCceEEEEEEEEeCC
Q psy3718         338 --GPMSEEVKQYTAEGT-PEQPPQDNTCTTL-TSQTIRVSWVSPPLITANGVIKGYKVVYGPSD  397 (543)
Q Consensus       338 --s~~s~~~~~~t~~~~-p~~~P~~~~~~~~-~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~  397 (543)
                        |. +..+...|.... ....|..+..... +.+.+.|.|.+|  .+++|.|.+|.|+|+...
T Consensus       810 ~cS~-a~~v~~RT~~~~~aD~i~g~v~we~~~~~~~v~l~w~EP--~~pNGli~~Y~Vk~r~~~  870 (1025)
T KOG4258|consen  810 GCSH-AAFVFARTMPTMGADDIPGPVTWECHIEMNSVILRWLEP--KEPNGLILNYEVKYRRNG  870 (1025)
T ss_pred             ccch-hhhhhhccccccccccCCCceeEecccCcceEEEecCCC--CCCCccEEEEEEEEeecc
Confidence              32 222333333221 1112333444444 778999999988  478999999999998543

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.11  E-value=4.7e-06  Score=60.45  Aligned_cols=47  Identities=11%  Similarity=-0.097  Sum_probs=34.4

Q ss_pred             ccEEEeecCC-------CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGFN-------PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~~-------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      |.+.|++.++       +.....+++|.|.+    |+|.|+|.|.|..|.. .++.|.|
T Consensus        16 p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764          16 PAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            5678876432       23345678999998    9999999999999985 4455543

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.11  E-value=5.4e-06  Score=62.75  Aligned_cols=30  Identities=10%  Similarity=-0.105  Sum_probs=26.6

Q ss_pred             ceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      +.|.|.+    |+|.|+|.|.|..|.. .++.|.|
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   89 (90)
T cd05858          55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV   89 (90)
T ss_pred             eEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence            4799999    9999999999999986 5678876

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.10  E-value=4.9e-06  Score=62.16  Aligned_cols=47  Identities=15%  Similarity=-0.046  Sum_probs=36.8

Q ss_pred             ccEEEeecC-----CCeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGF-----NPRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~-----~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      |.++|++..     +.++...++.|.|.+    |+|.|+|.|.|..|.. +++.|.|
T Consensus        29 p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   85 (85)
T cd05728          29 PAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV   85 (85)
T ss_pred             CEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence            568887742     245566788999999    9999999999999986 5566654

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.10  E-value=5.2e-06  Score=61.48  Aligned_cols=32  Identities=13%  Similarity=-0.280  Sum_probs=26.5

Q ss_pred             cCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718          17 GRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus        17 ~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      ..++|.|.+    |+|.|+|.|.|..|.. .++.|.|
T Consensus        45 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   81 (81)
T cd05765          45 NIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV   81 (81)
T ss_pred             cccEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence            346899999    9999999999999986 5566654

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.10  E-value=1.4e-05  Score=62.59  Aligned_cols=70  Identities=19%  Similarity=0.298  Sum_probs=46.2

Q ss_pred             cCCCeEEEEEeeccC------------CceEEEccC--Ce-e--c---------CCCCCCceEEeeeecCCCceeeEEEE
Q psy3718          65 RGEPSVLQCEAKGEK------------PIGILWNMN--NK-R--L---------DPKSDNRYTIREEILPNGVLSDLSIK  118 (543)
Q Consensus        65 ~g~~~~l~C~~~g~p------------~~~i~W~~~--~~-~--i---------~~~~~~~~~~~~~~~~~~~~~~L~i~  118 (543)
                      .|++++|.|......            .+.|.|+|-  +. +  +         ...-.+|+.+.... ......+|.|.
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~-~~~~~asL~I~   79 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYP-AIPSDATLEIT   79 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccC-CCCCCcEEEEe
Confidence            489999999987643            469999974  21 1  1         00111244432210 12234689999


Q ss_pred             eeecCCCccEEEEEecc
Q psy3718         119 RTERGDSALFTCEIKSQ  135 (543)
Q Consensus       119 ~~~~~D~G~Y~C~a~n~  135 (543)
                      +++.+|+|+|.|.+.+.
T Consensus        80 nl~~sDsG~Y~C~V~~g   96 (112)
T cd05900          80 ELRSNDSGTYRCEVMHG   96 (112)
T ss_pred             ecccccCEEEEEEEecC
Confidence            99999999999999875

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.09  E-value=4.9e-06  Score=63.24  Aligned_cols=47  Identities=17%  Similarity=0.084  Sum_probs=35.7

Q ss_pred             ccEEEeecCC---------CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGFN---------PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~~---------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      ++++||+...         .|+...++.|.|.+    |+|.|+|.++|..|.. .++.|.|
T Consensus        34 ~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~v   94 (94)
T cd05756          34 LNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLTV   94 (94)
T ss_pred             ceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEEEEEEEEC
Confidence            5789998543         33344578999999    9999999999998886 4456654

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.09  E-value=6.2e-06  Score=63.55  Aligned_cols=47  Identities=19%  Similarity=0.052  Sum_probs=34.5

Q ss_pred             ccEEEeecCC------------CeEEec----CceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGFN------------PRILLG----RVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~~------------~~~~~~----~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      |.++|++..+            .|+.+.    +++|.|.+    |+|.|+|.|.|..|.. .++.|.|
T Consensus        31 p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          31 PEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             CeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence            6789987432            233322    35899999    9999999999999986 5566654

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=98.09  E-value=6e-06  Score=59.90  Aligned_cols=47  Identities=15%  Similarity=0.034  Sum_probs=33.4

Q ss_pred             ccEEEeecC------CCeEE-ecC--c--eEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGF------NPRIL-LGR--V--LLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~------~~~~~-~~~--g--~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      |.++|++..      ..++. ..+  |  +|.|.+    |+|.|+|.|.|..|.. +++.|.|
T Consensus        13 P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744          13 PQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            567888633      12332 222  2  699999    9999999999999986 5567764

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.09  E-value=4.8e-06  Score=59.20  Aligned_cols=45  Identities=11%  Similarity=0.081  Sum_probs=33.7

Q ss_pred             ccEEEeecCC-----CeEEecCceEEEec--CCeEEEEEEecCCCCC-CCceE
Q psy3718           2 ENFFFYRGFN-----PRILLGRVLLPIGE--SSFHFDPELLNPSFNG-FPPLL   46 (543)
Q Consensus         2 ~~~~~~~~~~-----~~~~~~~g~L~I~~--D~G~Y~C~a~n~~g~~-~s~~l   46 (543)
                      |.++|++...     .++...++.|.|.+  |+|.|+|.|.|..|.. +++.|
T Consensus        16 P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739          16 PYVKWMKGGEELTKEDEMPVGRNVLELTNIYESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CEEEEEECCEECCCccceecCccEEEEeccccCeeEEEEEEeCCCEEEEEEEE
Confidence            6789987542     23334456899999  9999999999999985 44554

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.08  E-value=1.3e-05  Score=60.99  Aligned_cols=75  Identities=12%  Similarity=0.156  Sum_probs=51.3

Q ss_pred             CeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEE
Q psy3718          52 PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCE  131 (543)
Q Consensus        52 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~  131 (543)
                      |.+...| ...|.+|++++|.|.... +...+.|+|+|.......     ... ....+....+.|.+++++|+|.|.|.
T Consensus         2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~-----~~~-~~~~~~~a~f~I~~~~~~~~G~Y~C~   73 (94)
T cd05711           2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLH-----LYE-KHHGGFQASFPLGPVTPAHAGTYRCY   73 (94)
T ss_pred             CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCcee-----ccc-ccCCeEEEEEEecCCCcccCEEEEEE
Confidence            4444433 456779999999998765 556899999987643210     000 01123345799999999999999999


Q ss_pred             Eec
Q psy3718         132 IKS  134 (543)
Q Consensus       132 a~n  134 (543)
                      ...
T Consensus        74 ~~~   76 (94)
T cd05711          74 GSY   76 (94)
T ss_pred             EEC
Confidence            754

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=98.08  E-value=6.9e-06  Score=59.54  Aligned_cols=48  Identities=15%  Similarity=0.061  Sum_probs=34.4

Q ss_pred             CccEEEeecC-----CCeEEec----CceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           1 MENFFFYRGF-----NPRILLG----RVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         1 ~~~~~~~~~~-----~~~~~~~----~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      .|.++|++..     +.++.+.    .+.|.|.+    |+|.|+|.|.|..|.. .++.|.|
T Consensus        13 ~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748          13 TPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            3678998742     2333322    35899999    9999999999999986 4556654

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.06  E-value=8.4e-06  Score=62.14  Aligned_cols=42  Identities=17%  Similarity=-0.016  Sum_probs=32.9

Q ss_pred             ccEEEeecC-------CCeEEecCceEEEec-----CCeEEEEEEecCCCCCCC
Q psy3718           2 ENFFFYRGF-------NPRILLGRVLLPIGE-----SSFHFDPELLNPSFNGFP   43 (543)
Q Consensus         2 ~~~~~~~~~-------~~~~~~~~g~L~I~~-----D~G~Y~C~a~n~~g~~~s   43 (543)
                      |.++|++..       +.++.+.+|+|.|.+     |+|.|+|.|.|..|...+
T Consensus        34 P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S   87 (94)
T cd05848          34 PTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILS   87 (94)
T ss_pred             CEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence            678898742       234456788999976     999999999999998744

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.06  E-value=2.7e-05  Score=59.10  Aligned_cols=80  Identities=18%  Similarity=0.270  Sum_probs=52.4

Q ss_pred             eEEeecceeEeecCCCeEEEEEeec-cCCce--EEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718          53 EFEIKLRNQTSRRGEPSVLQCEAKG-EKPIG--ILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFT  129 (543)
Q Consensus        53 ~~~~~~~~~~v~~g~~~~l~C~~~g-~p~~~--i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~  129 (543)
                      .+.+.+....+.+|+.++|.|.+.| .|.+.  |.|+|++..+....   +.. ..........+|.+.....+|.-.|+
T Consensus         3 ~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~---~~~-~~~~~~~~~stlt~~~~r~D~g~~~s   78 (100)
T cd05755           3 SVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQP---FGD-NTKSPVNAPATITITVDREDHGANFS   78 (100)
T ss_pred             eEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccce---ecc-ccCCCceeEEEEEEecchhhCCcEEE
Confidence            3455566666789999999999988 46665  79999999985321   110 00011223456777654444445999


Q ss_pred             EEEeccc
Q psy3718         130 CEIKSQK  136 (543)
Q Consensus       130 C~a~n~~  136 (543)
                      |.|.+..
T Consensus        79 C~A~l~l   85 (100)
T cd05755          79 CETELDL   85 (100)
T ss_pred             EEEEecc
Confidence            9999963

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.06  E-value=6e-06  Score=59.33  Aligned_cols=47  Identities=9%  Similarity=-0.128  Sum_probs=34.2

Q ss_pred             ccEEEeecCCC----eEE--ecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGFNP----RIL--LGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~~~----~~~--~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      |.++|++....    +..  ..++.|.|.+    |+|.|+|.|.|..|.. .+..|.|
T Consensus        13 p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731          13 PEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            67899875431    122  2356999999    9999999999999976 4456655

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.06  E-value=9.4e-06  Score=61.89  Aligned_cols=43  Identities=12%  Similarity=-0.035  Sum_probs=33.1

Q ss_pred             ccEEEeecC-------CCeEEecCceEEEec-----CCeEEEEEEecCCCCCCCc
Q psy3718           2 ENFFFYRGF-------NPRILLGRVLLPIGE-----SSFHFDPELLNPSFNGFPP   44 (543)
Q Consensus         2 ~~~~~~~~~-------~~~~~~~~g~L~I~~-----D~G~Y~C~a~n~~g~~~s~   44 (543)
                      +.++|++..       +.++.+.+|+|.|.+     |+|.|+|.|+|..|...+.
T Consensus        34 p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~   88 (94)
T cd05850          34 ATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSR   88 (94)
T ss_pred             CEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEE
Confidence            567887632       235556788999976     9999999999999987553

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.05  E-value=1.4e-05  Score=61.60  Aligned_cols=73  Identities=11%  Similarity=0.358  Sum_probs=51.0

Q ss_pred             eEeecCCCeEEEEEeec-cCCceEEEccCCee-----c------CCCCCCceEEeeeecCCCceeeEEEEeeecCCCccE
Q psy3718          61 QTSRRGEPSVLQCEAKG-EKPIGILWNMNNKR-----L------DPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALF  128 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g-~p~~~i~W~~~~~~-----i------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y  128 (543)
                      +.+.+|++++|.|.... .....+.|+|....     +      ......++.+...  ......+|.|.+++.+|+|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~DsG~Y   79 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDD--PDNGVFTVTLNQLRKEDAGWY   79 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEec--CCCCEEEEEEcCCCHHHCEEE
Confidence            45789999999999875 35578899985421     1      0112345554322  234456899999999999999


Q ss_pred             EEEEecc
Q psy3718         129 TCEIKSQ  135 (543)
Q Consensus       129 ~C~a~n~  135 (543)
                      .|.+...
T Consensus        80 ~C~~~~~   86 (98)
T cd05716          80 WCGVGDD   86 (98)
T ss_pred             EEEcccC
Confidence            9998774

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.03  E-value=9.7e-06  Score=59.55  Aligned_cols=46  Identities=11%  Similarity=-0.085  Sum_probs=34.3

Q ss_pred             ccEEEeecCC-----CeEEecCceEEEec----CCeEEEEEEecCCCCCC-CceEE
Q psy3718           2 ENFFFYRGFN-----PRILLGRVLLPIGE----SSFHFDPELLNPSFNGF-PPLLL   47 (543)
Q Consensus         2 ~~~~~~~~~~-----~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~~-s~~l~   47 (543)
                      ++++|++...     .++.+.+++|.|.+    |+|.|+|.|.|..|... ...|.
T Consensus        23 ~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~   78 (79)
T cd04973          23 QSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVN   78 (79)
T ss_pred             ceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEe
Confidence            4688987432     35566678999999    99999999999988752 34444

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.03  E-value=1.2e-05  Score=63.06  Aligned_cols=34  Identities=21%  Similarity=0.136  Sum_probs=29.7

Q ss_pred             ceEEEec-----CCeEEEEEEecCCCCC-CCceEEEeCCC
Q psy3718          19 VLLPIGE-----SSFHFDPELLNPSFNG-FPPLLLSSAPP   52 (543)
Q Consensus        19 g~L~I~~-----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p   52 (543)
                      +.|.|.+     |.|.|+|.|.|..|.. .+..|.|+.+|
T Consensus        69 s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p  108 (109)
T cd05773          69 SILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRP  108 (109)
T ss_pred             eEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence            5799976     9999999999999997 56789888877

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=98.03  E-value=1.1e-05  Score=58.58  Aligned_cols=40  Identities=8%  Similarity=-0.094  Sum_probs=30.2

Q ss_pred             ccEEEeecCC-----CeEE---------ecCceEEEec----CCeEEEEEEecCCCCC
Q psy3718           2 ENFFFYRGFN-----PRIL---------LGRVLLPIGE----SSFHFDPELLNPSFNG   41 (543)
Q Consensus         2 ~~~~~~~~~~-----~~~~---------~~~g~L~I~~----D~G~Y~C~a~n~~g~~   41 (543)
                      |.++|+++..     ++..         ...+.|.|.+    |+|.|+|+|+|..|+.
T Consensus        13 Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~   70 (79)
T cd05855          13 PTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGED   70 (79)
T ss_pred             CceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCccc
Confidence            6789988442     2211         1246899999    9999999999999985

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=98.02  E-value=1.1e-05  Score=60.82  Aligned_cols=42  Identities=10%  Similarity=0.012  Sum_probs=31.0

Q ss_pred             cEEEeecCC------CeEE-ecCc---eEEEec----CCeEEEEEEecCCCCCCCc
Q psy3718           3 NFFFYRGFN------PRIL-LGRV---LLPIGE----SSFHFDPELLNPSFNGFPP   44 (543)
Q Consensus         3 ~~~~~~~~~------~~~~-~~~g---~L~I~~----D~G~Y~C~a~n~~g~~~s~   44 (543)
                      +++|++.++      .++. ..+|   +|.|.+    |+|.|+|.|+|..|....+
T Consensus        30 ~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   85 (92)
T cd05866          30 SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEA   85 (92)
T ss_pred             eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEE
Confidence            578886433      2333 3445   899999    9999999999999986443

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.02  E-value=1.2e-05  Score=58.51  Aligned_cols=47  Identities=17%  Similarity=0.069  Sum_probs=34.0

Q ss_pred             CccEEEeecC-------CCeEE--ecCceEEEec--------CCeEEEEEEecCCCCCCCceEE
Q psy3718           1 MENFFFYRGF-------NPRIL--LGRVLLPIGE--------SSFHFDPELLNPSFNGFPPLLL   47 (543)
Q Consensus         1 ~~~~~~~~~~-------~~~~~--~~~g~L~I~~--------D~G~Y~C~a~n~~g~~~s~~l~   47 (543)
                      .|.++|++..       +.++.  ..+|+|.|.+        |+|.|+|.|.|..|...+..+.
T Consensus        12 ~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~   75 (77)
T cd05875          12 VPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKIL   75 (77)
T ss_pred             CCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEE
Confidence            4788998843       23333  3578999974        6999999999999987554433

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.02  E-value=1.3e-05  Score=58.47  Aligned_cols=47  Identities=13%  Similarity=0.026  Sum_probs=33.5

Q ss_pred             CccEEEeecCC-------CeEE--ecCceEEEec--------CCeEEEEEEecCCCCCCCceEE
Q psy3718           1 MENFFFYRGFN-------PRIL--LGRVLLPIGE--------SSFHFDPELLNPSFNGFPPLLL   47 (543)
Q Consensus         1 ~~~~~~~~~~~-------~~~~--~~~g~L~I~~--------D~G~Y~C~a~n~~g~~~s~~l~   47 (543)
                      .|.++|++...       .++.  ..+|+|.|..        |+|.|+|.|.|..|...+..+.
T Consensus        12 ~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~   75 (77)
T cd05874          12 PPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIV   75 (77)
T ss_pred             CCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEE
Confidence            37789987432       2222  2478999976        6799999999999987554443

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.01  E-value=8.8e-06  Score=59.39  Aligned_cols=47  Identities=9%  Similarity=-0.083  Sum_probs=36.0

Q ss_pred             ccEEEeecCC--------CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGFN--------PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~~--------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      |.+.|++...        .+....++.|.|.+    |+|.|+|.|.|..|.. +++.|.|
T Consensus        16 p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978          16 PTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            5688876321        13445678999999    9999999999999986 5677776

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.01  E-value=9.8e-06  Score=63.54  Aligned_cols=72  Identities=19%  Similarity=0.220  Sum_probs=46.3

Q ss_pred             cCCCeEEEEEeeccC------CceEEEccCC---e---ecCCCCCCceEE------eeee-cCCCceeeEEEEeeecCCC
Q psy3718          65 RGEPSVLQCEAKGEK------PIGILWNMNN---K---RLDPKSDNRYTI------REEI-LPNGVLSDLSIKRTERGDS  125 (543)
Q Consensus        65 ~g~~~~l~C~~~g~p------~~~i~W~~~~---~---~i~~~~~~~~~~------~~~~-~~~~~~~~L~i~~~~~~D~  125 (543)
                      .|++++|.|.....+      ...|.|+|..   .   .+....+.+...      +-.. .......+|.|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999988753      4799999862   1   110001111110      0000 1123457899999999999


Q ss_pred             ccEEEEEeccc
Q psy3718         126 ALFTCEIKSQK  136 (543)
Q Consensus       126 G~Y~C~a~n~~  136 (543)
                      |.|.|.+.+..
T Consensus        81 G~Y~C~v~~~~   91 (106)
T cd05714          81 GRYRCEVIDGI   91 (106)
T ss_pred             EEEEEEEEcCC
Confidence            99999999853

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.01  E-value=1.7e-05  Score=62.13  Aligned_cols=71  Identities=20%  Similarity=0.311  Sum_probs=47.0

Q ss_pred             cCCCeEEEEEeeccC------CceEEEccCCee--------cC--------CCCCCceEEeeeecCCCceeeEEEEeeec
Q psy3718          65 RGEPSVLQCEAKGEK------PIGILWNMNNKR--------LD--------PKSDNRYTIREEILPNGVLSDLSIKRTER  122 (543)
Q Consensus        65 ~g~~~~l~C~~~g~p------~~~i~W~~~~~~--------i~--------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  122 (543)
                      .|++++|.|.....|      ...|.|+|....        +.        .....|+.+..   ......+|.|.+++.
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~sL~I~~v~~   77 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRR---AHDLDASLVITDLRL   77 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecC---CCCCcEEEEEccCCh
Confidence            489999999987663      367999985411        00        00112333211   112246899999999


Q ss_pred             CCCccEEEEEecccce
Q psy3718         123 GDSALFTCEIKSQKIS  138 (543)
Q Consensus       123 ~D~G~Y~C~a~n~~~s  138 (543)
                      +|+|.|.|.+.+..+.
T Consensus        78 ~DsG~Y~C~v~~~~~~   93 (106)
T cd05877          78 EDYGRYRCEVIDGLED   93 (106)
T ss_pred             HHCEEEEEEEEecccc
Confidence            9999999999886444

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.01  E-value=1.3e-05  Score=60.09  Aligned_cols=46  Identities=11%  Similarity=-0.105  Sum_probs=34.5

Q ss_pred             ccEEEeecC-------CCeEEecCceEEEec----CCeEEEEEEecCCCCCCC--ceEE
Q psy3718           2 ENFFFYRGF-------NPRILLGRVLLPIGE----SSFHFDPELLNPSFNGFP--PLLL   47 (543)
Q Consensus         2 ~~~~~~~~~-------~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~~s--~~l~   47 (543)
                      +.++|++..       .++....+++|.|.+    |+|.|+|.|.|..|...+  +.|.
T Consensus        27 p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~   85 (86)
T cd05724          27 PTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLS   85 (86)
T ss_pred             CEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEE
Confidence            568898732       234445678999999    999999999999998643  4544

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=97.99  E-value=1.2e-05  Score=59.23  Aligned_cols=24  Identities=8%  Similarity=-0.081  Sum_probs=21.7

Q ss_pred             CceEEEec----CCeEEEEEEecCCCCC
Q psy3718          18 RVLLPIGE----SSFHFDPELLNPSFNG   41 (543)
Q Consensus        18 ~g~L~I~~----D~G~Y~C~a~n~~g~~   41 (543)
                      .+.|+|.+    |+|.|+|+|.|..|..
T Consensus        45 ~~~L~I~~~~~~D~G~YtC~A~N~~G~~   72 (81)
T cd04971          45 HGCLQFDNPTHVNNGNYTLVASNEYGQD   72 (81)
T ss_pred             EEEEEECCCCcccCeEEEEEEEeCCCCe
Confidence            45799998    9999999999999986

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.97  E-value=4.3e-05  Score=57.80  Aligned_cols=70  Identities=11%  Similarity=0.260  Sum_probs=44.6

Q ss_pred             CCeEEEEEeeccCC-ceEEEccCCe----ecC-----------CCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718          67 EPSVLQCEAKGEKP-IGILWNMNNK----RLD-----------PKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC  130 (543)
Q Consensus        67 ~~~~l~C~~~g~p~-~~i~W~~~~~----~i~-----------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  130 (543)
                      ++++|.|.....+. ..|+|.|...    .+.           ..-..|..+...   ...-.+|.|.+++.+|+|.|+|
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~---~~~d~sl~i~nv~~~D~G~Y~C   77 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNY---SLLDATIMLENVGFSDIGVYIC   77 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCC---CCCccEEEEeCCCccccEEEEE
Confidence            47899999875433 6899987421    110           011123433211   1223589999999999999999


Q ss_pred             EEec-cccee
Q psy3718         131 EIKS-QKISS  139 (543)
Q Consensus       131 ~a~n-~~~sv  139 (543)
                      .+.+ ..|+.
T Consensus        78 ~v~tfP~G~~   87 (96)
T cd05887          78 KAVTFPLGNT   87 (96)
T ss_pred             EEEeCCCCCe
Confidence            9755 46664

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.96  E-value=3.2e-05  Score=60.62  Aligned_cols=71  Identities=24%  Similarity=0.367  Sum_probs=47.2

Q ss_pred             EeecCCCeEEEEEeecc-CCceEEEccCCee---c--C----CC-----------CCCceEEeeeecCCCceeeEEEEee
Q psy3718          62 TSRRGEPSVLQCEAKGE-KPIGILWNMNNKR---L--D----PK-----------SDNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        62 ~v~~g~~~~l~C~~~g~-p~~~i~W~~~~~~---i--~----~~-----------~~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      .+.+|++++|.|.+.+. ....+.|+|-..-   .  .    ..           +..++.+..  ........|+|.++
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~--~~~~~~~~L~I~~~   79 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRV--TSDSSRYRLHINRV   79 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEE--ECCCCEEEEEECCC
Confidence            57899999999998764 3458999974221   0  0    00           012343321  12334467999999


Q ss_pred             ecCCCccEEEEEec
Q psy3718         121 ERGDSALFTCEIKS  134 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n  134 (543)
                      +.+|+|.|.|...+
T Consensus        80 ~~~Dsg~YyCa~~~   93 (107)
T cd07700          80 KPEDSGTYFCMTVG   93 (107)
T ss_pred             CHHHCEEEEEeEcC
Confidence            99999999999864

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.96  E-value=3.2e-05  Score=57.15  Aligned_cols=63  Identities=25%  Similarity=0.524  Sum_probs=43.7

Q ss_pred             eEEEEEeecc-CCceEEEccCCeecCCCCCCceEEeeeecCCC----ceeeEEEEeeecCCCccEEEEEeccc
Q psy3718          69 SVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILPNG----VLSDLSIKRTERGDSALFTCEIKSQK  136 (543)
Q Consensus        69 ~~l~C~~~g~-p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~D~G~Y~C~a~n~~  136 (543)
                      ++|.|.+.|. |.+.|.|+++|+++....  . .+...  .++    ..+.|.|......|...|+|.|.+..
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~--~-~~~~~--~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~   69 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAP--T-SVLED--GNGKTFTVSSSVEFQVTREDDGAEITCSVGHES   69 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcc--e-eEEEC--CCCCEEEEEEEEEEEecchhCCCEEEEEEECcc
Confidence            6899999885 889999999999885321  1 12111  121    13456665656677899999999964

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.94  E-value=1.9e-05  Score=57.58  Aligned_cols=46  Identities=15%  Similarity=0.046  Sum_probs=33.1

Q ss_pred             CccEEEeecCC-------CeEE--ecCceEEEec--------CCeEEEEEEecCCCCCCCceE
Q psy3718           1 MENFFFYRGFN-------PRIL--LGRVLLPIGE--------SSFHFDPELLNPSFNGFPPLL   46 (543)
Q Consensus         1 ~~~~~~~~~~~-------~~~~--~~~g~L~I~~--------D~G~Y~C~a~n~~g~~~s~~l   46 (543)
                      +|.++|++...       .++.  ..+|+|.|.+        |+|.|+|.|.|..|...+..+
T Consensus        12 ~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~   74 (77)
T cd05733          12 PPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEI   74 (77)
T ss_pred             CCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEcccc
Confidence            46789987321       2333  3468999975        789999999999998755433

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=97.93  E-value=6.1e-05  Score=58.12  Aligned_cols=70  Identities=14%  Similarity=0.263  Sum_probs=43.8

Q ss_pred             CCeEEEEEeeccC---CceEEEccCCe---e--c---CCCC--------CCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          67 EPSVLQCEAKGEK---PIGILWNMNNK---R--L---DPKS--------DNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        67 ~~~~l~C~~~g~p---~~~i~W~~~~~---~--i---~~~~--------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      .+++|.|.....+   ...|.|+|...   +  +   ....        .+|..+....  .....+|+|.+++.+|+|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~--~~~~~sL~I~nv~~sD~Gt   78 (100)
T cd05888           1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPN--PIADGALILRNAVQADEGK   78 (100)
T ss_pred             CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCC--CCCceEEEEecCccccceE
Confidence            3689999987544   45899998421   1  1   0100        1233332111  1123579999999999999


Q ss_pred             EEEEEec-ccce
Q psy3718         128 FTCEIKS-QKIS  138 (543)
Q Consensus       128 Y~C~a~n-~~~s  138 (543)
                      |.|.+.+ ..|+
T Consensus        79 Y~C~v~~~p~g~   90 (100)
T cd05888          79 YKCRVITFPAGN   90 (100)
T ss_pred             EEEEEEeCCCCC
Confidence            9999987 4555

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.93  E-value=4.8e-05  Score=60.57  Aligned_cols=76  Identities=21%  Similarity=0.375  Sum_probs=50.7

Q ss_pred             ecceeEeecCCCeEEEEEeeccC--CceEEEccC--Ceec------C---------CCCCCceEEeeeecCCCceeeEEE
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKGEK--PIGILWNMN--NKRL------D---------PKSDNRYTIREEILPNGVLSDLSI  117 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g~p--~~~i~W~~~--~~~i------~---------~~~~~~~~~~~~~~~~~~~~~L~i  117 (543)
                      .|....+.+|++++|.|...+..  ...+.|+|-  |+.+      .         .....++.+...  .......|.|
T Consensus         3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~--~~~~~~~L~I   80 (117)
T cd04981           3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRD--TSKSTVYLQL   80 (117)
T ss_pred             cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEE--ccCCEEEEEE
Confidence            46677889999999999987543  467999973  2211      0         001134443321  1123347999


Q ss_pred             EeeecCCCccEEEEEec
Q psy3718         118 KRTERGDSALFTCEIKS  134 (543)
Q Consensus       118 ~~~~~~D~G~Y~C~a~n  134 (543)
                      .++.++|+|.|.|.+..
T Consensus        81 ~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          81 NSLTPEDTAVYYCARGL   97 (117)
T ss_pred             CCCCHHHCEEEEEEEEc
Confidence            99999999999998865

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=97.91  E-value=3.6e-05  Score=58.36  Aligned_cols=46  Identities=7%  Similarity=-0.070  Sum_probs=31.4

Q ss_pred             ccEEEeecCCC-------eEEecC----ceEEEec----CCeEEEEEEecCCCCCCC--ceEE
Q psy3718           2 ENFFFYRGFNP-------RILLGR----VLLPIGE----SSFHFDPELLNPSFNGFP--PLLL   47 (543)
Q Consensus         2 ~~~~~~~~~~~-------~~~~~~----g~L~I~~----D~G~Y~C~a~n~~g~~~s--~~l~   47 (543)
                      ++++|++.++.       +....+    ++|+|.+    |+|.|+|.|.|..|....  +.|.
T Consensus        29 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~   91 (92)
T cd04977          29 KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLK   91 (92)
T ss_pred             CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence            36788864332       222223    3899999    999999999999876544  4444

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.91  E-value=0.00011  Score=55.83  Aligned_cols=78  Identities=17%  Similarity=0.305  Sum_probs=49.1

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeecc-CC-ceEEEccCCeecCCCC-CCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKS-DNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      ||.+.+.+....   |+.++|.|.+.|. |. .++.|++++..+.... ......    .+++.........+..+|.+.
T Consensus         2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~----~~d~ty~~~s~l~v~~~~~~~   74 (93)
T cd07698           2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILP----NGDGTYQLWVTLEVPPEDKAR   74 (93)
T ss_pred             CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEE----CCCCeEEEEEEEEECCCCCCE
Confidence            566555433322   7889999999994 55 5999999996432221 111111    134444444455566679999


Q ss_pred             EEEEEecc
Q psy3718         128 FTCEIKSQ  135 (543)
Q Consensus       128 Y~C~a~n~  135 (543)
                      |+|.+...
T Consensus        75 ytC~V~H~   82 (93)
T cd07698          75 YSCRVEHS   82 (93)
T ss_pred             EEEEEEeC
Confidence            99999885

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=97.91  E-value=2.8e-05  Score=56.73  Aligned_cols=47  Identities=9%  Similarity=-0.093  Sum_probs=32.6

Q ss_pred             ccEEEeecCC------CeEEe--cCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGFN------PRILL--GRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~~------~~~~~--~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      |.++|++...      .++.+  .+++|.|.+    |+|.|+|.|.|..|.. +++.+.|
T Consensus        13 p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l   72 (77)
T cd05760          13 PTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL   72 (77)
T ss_pred             CcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence            5688987321      12222  246899999    9999999999999985 3444443

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>KOG3515|consensus

Probab=97.91  E-value=0.00027  Score=72.38  Aligned_cols=244  Identities=13%  Similarity=0.112  Sum_probs=137.1

Q ss_pred             CCeEEEEEEecCCCCCCC-ceEEEeCCCeEEeecceeEeecCCCeEEEEEeeccCC--ceEEEccCCeecCCCCCCceEE
Q psy3718          26 SSFHFDPELLNPSFNGFP-PLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKP--IGILWNMNNKRLDPKSDNRYTI  102 (543)
Q Consensus        26 D~G~Y~C~a~n~~g~~~s-~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~~~~~i~~~~~~~~~~  102 (543)
                      |.|.|.|.|.|..|.... ..+.+...|.+...-..+....|+.+.+.|.....+.  -.+.|.+.+.+.....+..-..
T Consensus       469 d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~~~~~  548 (741)
T KOG3515|consen  469 DGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQDAPQ  548 (741)
T ss_pred             cCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceeeccccccchhhhcccccCCCCcccccccccc
Confidence            999999999999887644 3456777777766656677788888999999988775  5778999888763222111111


Q ss_pred             eeeecCCCceeeEEEEeeecCCCccEEEEEecccce------eeeeeeecccccccceEEEEEEEecccCCCCCCCcEEe
Q psy3718         103 REEILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS------SQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTL  176 (543)
Q Consensus       103 ~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s------v~~~~~~v~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~  176 (543)
                      .    .....+.+.+......-++.|.|.+.+. +.      +-.....+. +.+.+.+..    ....|.+-.+..-..
T Consensus       549 ~----~~~~~a~~~~~~~~~~~~~~~~~~~d~~-~~pA~~~~~l~~~s~~~-v~~~tp~~~----~~~~g~v~as~~~~a  618 (741)
T KOG3515|consen  549 Q----QLMAHAQLLVSGNSSLQASETACVVDGS-SPPAGLSLVLKAYSALI-VTVRTPNMY----TAQEGCVNASDDCVA  618 (741)
T ss_pred             c----ccCCccceeecccccccccceEEeecCC-CCccccceEEEeccccc-ccccCCcee----eeccCccccccccee
Confidence            1    1111234666665566679999999992 21      001111110 111111111    001111111111100


Q ss_pred             eecCCCCcceeEeccCcc-----------ccccccee--ccccccccCCCCccceEEEEEEEEEcCCCCCCCCccEEEec
Q psy3718         177 SPSNRVPARIASFNDNFT-----------ATYTEDIK--LPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILT  243 (543)
Q Consensus       177 ~pi~~~~~~~v~~~~~~~-----------~~~~~~~~--~~~~~~g~p~p~~~w~~y~~~v~a~n~~G~~~~s~~~~~~t  243 (543)
                      .   .++-....+.+...           ..|.....  ........+.     ..|...|.+.|..|.+..+....--+
T Consensus       619 ~---~~~~~~~~~~k~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-----~~y~~~c~t~n~lg~~~v~~~~~~~t  690 (741)
T KOG3515|consen  619 S---GVPSTSFTTAKTPLQTTEGPHIREKATQQGQTHSSSEWILNHIDG-----SDYENGCTTQNLLGSDHVSGAIHSGT  690 (741)
T ss_pred             c---ccccceeecccCCCcccCCceEEEeeeeccccccccccccCCcch-----hhhcceeeecccCCCccccceecCCc
Confidence            0   11101111211110           01111000  0000011444     78899999999999887766554443


Q ss_pred             cCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCC
Q psy3718         244 AEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTD  294 (543)
Q Consensus       244 ~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~  294 (543)
                      .    +..|.++.+.......+.+.|.+..+   .+..+.|.+.|...+..
T Consensus       691 ~----~~~~~n~~~~~~~~~~i~l~~~p~fd---gg~~q~f~~~~~~~~~~  734 (741)
T KOG3515|consen  691 A----SVGPINLTYDNLTYSTISLEWMPGFD---GGLQQRFFLKYYDLGTM  734 (741)
T ss_pred             C----CCCccceEeeeeeeeeeceeeeeccc---cccccceeeehhhcCCc
Confidence            3    34667999999999999999999876   45667888887665543

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.90  E-value=3.9e-05  Score=56.62  Aligned_cols=63  Identities=19%  Similarity=0.379  Sum_probs=42.5

Q ss_pred             eEEEEEeec-cCCceEEEccCCeecCCCCCCceEEeeeecCCC---ceeeEEEEeeecCCCccEEEEEecc
Q psy3718          69 SVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEILPNG---VLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        69 ~~l~C~~~g-~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      ++|.|.+.| .|.+.|.|+|+|+.+...  .......  ..++   .++.|.|......|...|+|.|.+.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~--~~~~~~~--~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~   68 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDV--KYLKEED--ANRKTFTVSSTLDFRVDRSDDGVAIICRVDHE   68 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCc--eeeEeeC--CCCCEEEEEEEEEEEcccccCCCEEEEEEech
Confidence            689999988 678999999999997421  1111110  1122   2446666655566778999999996

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.88  E-value=7.5e-05  Score=59.78  Aligned_cols=76  Identities=11%  Similarity=0.166  Sum_probs=50.1

Q ss_pred             ecceeEeecCCCeEEEEEeeccC------CceEEEccCCe-----ecCC----------CCCCceEEeeeecCCCceeeE
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKGEK------PIGILWNMNNK-----RLDP----------KSDNRYTIREEILPNGVLSDL  115 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g~p------~~~i~W~~~~~-----~i~~----------~~~~~~~~~~~~~~~~~~~~L  115 (543)
                      .|+.+.+.+|++++|.|......      ...+.|+|...     .+..          .-..|+.+...  ......+|
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~--~~~~~~sL   82 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGD--LGKKNCSL   82 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecC--CCCCEEEE
Confidence            36667889999999999875332      35689997531     1100          00123333211  13345689


Q ss_pred             EEEeeecCCCccEEEEEec
Q psy3718         116 SIKRTERGDSALFTCEIKS  134 (543)
Q Consensus       116 ~i~~~~~~D~G~Y~C~a~n  134 (543)
                      .|.+++.+|+|.|.|....
T Consensus        83 ~I~~l~~~Dsg~Y~C~~~~  101 (119)
T cd05712          83 LISDAQPEDSGKYFFRVEL  101 (119)
T ss_pred             EEccCChhhCeEEEEEEEc
Confidence            9999999999999998866

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.88  E-value=2.2e-05  Score=59.32  Aligned_cols=47  Identities=19%  Similarity=0.191  Sum_probs=33.8

Q ss_pred             ccEEEeecCC----CeEEe--cCceEEEec----CCeEEEEEEecCCCCCCC--ceEEE
Q psy3718           2 ENFFFYRGFN----PRILL--GRVLLPIGE----SSFHFDPELLNPSFNGFP--PLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~~----~~~~~--~~g~L~I~~----D~G~Y~C~a~n~~g~~~s--~~l~v   48 (543)
                      |.++|++...    .++.+  .+++|.|.+    |+|.|+|.|.|..|...+  +.|.|
T Consensus        32 p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          32 TYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV   90 (91)
T ss_pred             CEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence            5678887432    22222  346999999    999999999999998643  45555

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=97.86  E-value=2.6e-05  Score=60.01  Aligned_cols=31  Identities=10%  Similarity=-0.082  Sum_probs=26.5

Q ss_pred             ceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS   49 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~   49 (543)
                      ++|.|.+    |+|.|+|.|.|..|.. .++.|.|.
T Consensus        65 ~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~  100 (101)
T cd04975          65 SELKLVRLKESEAGTYTFLASNSDASKSLTFELYVN  100 (101)
T ss_pred             EEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence            6899999    9999999999999986 55677764

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.86  E-value=6.7e-05  Score=57.60  Aligned_cols=70  Identities=16%  Similarity=0.217  Sum_probs=43.7

Q ss_pred             CCCeEEEEEeeccCC-ceEEEccCCee----c---CCCC--------CCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718          66 GEPSVLQCEAKGEKP-IGILWNMNNKR----L---DPKS--------DNRYTIREEILPNGVLSDLSIKRTERGDSALFT  129 (543)
Q Consensus        66 g~~~~l~C~~~g~p~-~~i~W~~~~~~----i---~~~~--------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~  129 (543)
                      |++++|.|....... -.|.|+|....    +   ....        ..++.+.   ..+....+|.|.+++.+|+|.|.
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~sL~I~nv~~~D~G~Y~   77 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSIT---SLGLNSTSITIWNVTLEDEGCYK   77 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEc---CCCCCccEEEEeCCceeeeEEEE
Confidence            789999998665433 37999974321    0   0000        1122211   11223468999999999999999


Q ss_pred             EEEecc-cce
Q psy3718         130 CEIKSQ-KIS  138 (543)
Q Consensus       130 C~a~n~-~~s  138 (543)
                      |...+. .|+
T Consensus        78 C~~~~~p~g~   87 (97)
T cd05846          78 CIFNTFPDGS   87 (97)
T ss_pred             EEEEeCCCCC
Confidence            997653 444

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.84  E-value=0.0002  Score=53.90  Aligned_cols=68  Identities=19%  Similarity=0.346  Sum_probs=43.5

Q ss_pred             ecCCCeEEEEEeec-cCC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718          64 RRGEPSVLQCEAKG-EKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        64 ~~g~~~~l~C~~~g-~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      ..|+..+|.|.+.| .|. ..+.|+|||.++. +.. ...+..  -.++......-..+.+.+...|+|.+...
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~-~~~~~p--~~d~tyq~~s~l~~~~~~~~~ysC~V~H~   82 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVE-QSDLSF--SKDWTFYLLKSTEFTPTKGDEYACRVRHN   82 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcE-ECcEEE--CCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence            45778899999999 454 7999999999985 221 111111  12333232333345677888999999874

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>smart00060 FN3 Fibronectin type 3 domain

Probab=97.84  E-value=0.00027  Score=51.72  Aligned_cols=80  Identities=30%  Similarity=0.610  Sum_probs=52.4

Q ss_pred             CCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEE
Q psy3718         251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQ  330 (543)
Q Consensus       251 ~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~  330 (543)
                      +|.++.+......++.|+|.++...  . . ..|.+.|..........+.....   ......+.+.+|.|++.|.|+|+
T Consensus         3 ~p~~~~~~~~~~~~~~v~W~~~~~~--~-~-~~y~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~L~~~~~Y~v~v~   75 (83)
T smart00060        3 PPSNLRVTDVTSTSVTLSWEPPPDD--G-I-TGYIVGYRVEYREEGSSWKEVNV---TPSSTSYTLTGLKPGTEYEFRVR   75 (83)
T ss_pred             CCCcEEEEEEeCCEEEEEECCCCCC--C-C-CccEEEEEEEEecCCCccEEEEe---cCCccEEEEeCcCCCCEEEEEEE
Confidence            3445777777777999999977543  1 1 67777776544322101111111   12257899999999999999999


Q ss_pred             EEeCCCC
Q psy3718         331 ALNKLGP  337 (543)
Q Consensus       331 a~n~~G~  337 (543)
                      |.+..|.
T Consensus        76 a~~~~g~   82 (83)
T smart00060       76 AVNGAGE   82 (83)
T ss_pred             EEcccCC
Confidence            9987553

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>PHA03376 BARF1; Provisional

Probab=97.84  E-value=0.00025  Score=58.84  Aligned_cols=77  Identities=13%  Similarity=0.066  Sum_probs=50.3

Q ss_pred             eeEeecCCCeEEEEEee---ccCCceEEEccCCe----e-cCCCCC------CceEEeeeecCCCceeeEEEEeeecCCC
Q psy3718          60 NQTSRRGEPSVLQCEAK---GEKPIGILWNMNNK----R-LDPKSD------NRYTIREEILPNGVLSDLSIKRTERGDS  125 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~---g~p~~~i~W~~~~~----~-i~~~~~------~~~~~~~~~~~~~~~~~L~i~~~~~~D~  125 (543)
                      .+.+..|+++.|.|.-.   ..+...|.|+|++.    - +.....      ..++-...+..+...-.|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            45678999999999975   23567999999532    1 100000      0111122222334556899999999999


Q ss_pred             ccEEEEEeccc
Q psy3718         126 ALFTCEIKSQK  136 (543)
Q Consensus       126 G~Y~C~a~n~~  136 (543)
                      |.|+|..+-..
T Consensus       100 GtY~C~fQkge  110 (221)
T PHA03376        100 GNYLCRMKLGE  110 (221)
T ss_pred             ceEEEEEEcCC
Confidence            99999998753

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=97.83  E-value=6.1e-05  Score=54.86  Aligned_cols=48  Identities=10%  Similarity=-0.059  Sum_probs=35.3

Q ss_pred             ccEEEeecCC--------CeEEecCc-eEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718           2 ENFFFYRGFN--------PRILLGRV-LLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS   49 (543)
Q Consensus         2 ~~~~~~~~~~--------~~~~~~~g-~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~   49 (543)
                      +.++|++...        +.....++ .|.|.+    |+|.|+|.|.|..|.. .++.|.|+
T Consensus        13 p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736          13 PRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            4678876432        12234444 699999    9999999999999987 56788775

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.81  E-value=0.00037  Score=52.60  Aligned_cols=69  Identities=14%  Similarity=0.279  Sum_probs=41.5

Q ss_pred             ecCCCeEEEEEeec-cCC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718          64 RRGEPSVLQCEAKG-EKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        64 ~~g~~~~l~C~~~g-~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      ..|+.++|.|.+.| .|. ..+.|.+||.++..+. ..-.+.  .-.++......-..+.+.+...|+|.+...
T Consensus        13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~-~~~~~~--~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~   83 (94)
T cd05767          13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGV-SETRYY--PRQDLSFQKFSYLNFTPEEGDIYSCIVEHW   83 (94)
T ss_pred             cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCce-EEeeeE--eCCCCcEEEEEEEEEECCCCCeEEEEEEeC
Confidence            34677899999999 564 8999999999874321 101111  012232222222234456777999999774

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.80  E-value=7.1e-05  Score=56.62  Aligned_cols=79  Identities=14%  Similarity=0.250  Sum_probs=45.7

Q ss_pred             ecceeEeecCCCeEEEEEeec-cCC-ceEEEccCCeecCCCCCCceEEeeeecCCCc---eeeEEEEeeecCCCccEEEE
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKG-EKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGV---LSDLSIKRTERGDSALFTCE  131 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g-~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~  131 (543)
                      +|.......++.++|.|.+.| .|. .+|.|++||..+...........   ..++.   ++.|.|..-.-.+...|+|.
T Consensus         5 ~ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~---~~~~Ty~~~S~L~v~~~~w~~~~~ytC~   81 (94)
T cd05847           5 HSSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQK---EEGSTFSTTSELNVTQEDWKSGKTYTCK   81 (94)
T ss_pred             CcChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEE---CCCCcEEEEEEEEEchHHhcCCCeEEEE
Confidence            343333335677999999999 565 89999999998632211100111   11222   23444443323356799999


Q ss_pred             Eecccce
Q psy3718         132 IKSQKIS  138 (543)
Q Consensus       132 a~n~~~s  138 (543)
                      +.....+
T Consensus        82 V~H~~~~   88 (94)
T cd05847          82 VTHQGTT   88 (94)
T ss_pred             EEECCee
Confidence            9886444

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=97.80  E-value=7.4e-05  Score=58.71  Aligned_cols=70  Identities=20%  Similarity=0.294  Sum_probs=45.5

Q ss_pred             cCCCeEEEEEeeccC----------CceEEEccC--CeecC------------CCCCCceEEeeeecCCCceeeEEEEee
Q psy3718          65 RGEPSVLQCEAKGEK----------PIGILWNMN--NKRLD------------PKSDNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        65 ~g~~~~l~C~~~g~p----------~~~i~W~~~--~~~i~------------~~~~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      .|++++|.|.....+          ...|.|+|.  ++.+.            ..-.+|+.+... .......+|+|.++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~-~~~~~~asL~I~~l   79 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNY-PENRGDASLEISRL   79 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccC-CCCCCcEEEEECCC
Confidence            389999999997654          367999985  22110            001122222111 01234468999999


Q ss_pred             ecCCCccEEEEEecc
Q psy3718         121 ERGDSALFTCEIKSQ  135 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n~  135 (543)
                      +.+|+|.|.|.+...
T Consensus        80 ~~sD~G~Y~C~v~~~   94 (110)
T cd05878          80 RSSDSGVYRCEVMHG   94 (110)
T ss_pred             ChhhCEEEEEEEEeC
Confidence            999999999999875

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=97.79  E-value=4.6e-05  Score=58.35  Aligned_cols=48  Identities=6%  Similarity=-0.135  Sum_probs=34.8

Q ss_pred             ccEEEeecC------CCeEE-ecC-ceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718           2 ENFFFYRGF------NPRIL-LGR-VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS   49 (543)
Q Consensus         2 ~~~~~~~~~------~~~~~-~~~-g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~   49 (543)
                      +.++|++..      +.++. ..+ +.|.|.+    |+|.|+|.|.|..|.. .++.|.|.
T Consensus        33 p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~   93 (95)
T cd05730          33 PTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVF   93 (95)
T ss_pred             CEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEE
Confidence            567887632      13333 233 4799999    9999999999999986 56777774

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=97.79  E-value=4.5e-05  Score=58.55  Aligned_cols=30  Identities=17%  Similarity=0.018  Sum_probs=25.3

Q ss_pred             ceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      +.|.|.+    |+|.|+|.|.|..|.. .++.|.|
T Consensus        62 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~v   96 (96)
T cd05732          62 SSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEeC
Confidence            4899998    9999999999999986 4556654

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=97.78  E-value=4.2e-05  Score=58.96  Aligned_cols=31  Identities=13%  Similarity=-0.066  Sum_probs=26.5

Q ss_pred             ceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS   49 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~   49 (543)
                      ++|.|.+    |+|.|+|.|.|..|.. .++.|.|+
T Consensus        65 s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~  100 (101)
T cd05859          65 SKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ  100 (101)
T ss_pred             cEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence            5899999    9999999999999986 56777764

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=97.78  E-value=3.8e-05  Score=58.19  Aligned_cols=41  Identities=12%  Similarity=-0.059  Sum_probs=31.5

Q ss_pred             ccEEEeecC-------CCeEEecCceEEEec-----CCeEEEEEEecCCCCCC
Q psy3718           2 ENFFFYRGF-------NPRILLGRVLLPIGE-----SSFHFDPELLNPSFNGF   42 (543)
Q Consensus         2 ~~~~~~~~~-------~~~~~~~~g~L~I~~-----D~G~Y~C~a~n~~g~~~   42 (543)
                      ++++|+++.       +.++...+|.|.|.+     |+|.|+|.|.|..|...
T Consensus        34 p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~   86 (91)
T cd04967          34 PTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVL   86 (91)
T ss_pred             CEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence            678898732       234445678999976     99999999999999753

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.76  E-value=0.00017  Score=55.13  Aligned_cols=69  Identities=20%  Similarity=0.382  Sum_probs=42.4

Q ss_pred             CCeEEEEEeecc-CC---ceEEEccCCe----ec-----------CCCCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          67 EPSVLQCEAKGE-KP---IGILWNMNNK----RL-----------DPKSDNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        67 ~~~~l~C~~~g~-p~---~~i~W~~~~~----~i-----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      .+++|.|..... |.   ..|+|.+...    .+           ...-..|+.+.....   .-.+|.|.+++.+|.|.
T Consensus         1 ~~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~---~daSi~i~nl~~~D~G~   77 (99)
T cd05886           1 TDVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSF---EDGTISLSRLELEDEGV   77 (99)
T ss_pred             CcEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCC---CcceEEEcCCccccCEE
Confidence            368999998743 21   2699987421    11           000112222221111   22589999999999999


Q ss_pred             EEEEEec-ccce
Q psy3718         128 FTCEIKS-QKIS  138 (543)
Q Consensus       128 Y~C~a~n-~~~s  138 (543)
                      |+|.+.+ ..|+
T Consensus        78 Y~C~v~t~P~g~   89 (99)
T cd05886          78 YICEFATFPTGN   89 (99)
T ss_pred             EEEEEEeCCCCC
Confidence            9999999 4565

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=97.75  E-value=3.2e-05  Score=56.34  Aligned_cols=23  Identities=13%  Similarity=-0.008  Sum_probs=21.2

Q ss_pred             ceEEEec----CCeEEEEEEecCCCCC
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSFNG   41 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g~~   41 (543)
                      ++|.|.+    |+|.|+|.|.|..|..
T Consensus        44 ~~L~I~~~~~~DsG~Y~C~a~N~~g~~   70 (76)
T cd05895          44 SELQISKASLADNGEYKCMVSSKLGND   70 (76)
T ss_pred             EEEEECcCCcccCEEEEEEEEeCCCce
Confidence            6899999    9999999999999875

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=97.75  E-value=4.9e-05  Score=57.65  Aligned_cols=47  Identities=11%  Similarity=0.031  Sum_probs=33.2

Q ss_pred             ccEEEeecCC------CeE-EecC---ceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGFN------PRI-LLGR---VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~~------~~~-~~~~---g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      +.++||+...      ++. .+.+   ++|.|.+    |+|.|+|.|.|..|.. .+..|.|
T Consensus        31 p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~   92 (92)
T cd05891          31 PEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV   92 (92)
T ss_pred             CeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence            5688987432      111 1233   3899999    9999999999999986 5556554

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=97.75  E-value=3.3e-05  Score=57.71  Aligned_cols=47  Identities=9%  Similarity=-0.146  Sum_probs=33.0

Q ss_pred             ccEEEeecCC-----Ce---EE--ecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGFN-----PR---IL--LGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~~-----~~---~~--~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      +.++|++...     .+   +.  ..+++|.|.+    |+|.|+|.|.|..|.. .++.|.|
T Consensus        24 p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   85 (85)
T cd05857          24 PTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   85 (85)
T ss_pred             CEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence            5688987421     11   11  2345899988    9999999999999986 4566654

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=97.75  E-value=6.7e-05  Score=56.62  Aligned_cols=40  Identities=10%  Similarity=0.089  Sum_probs=31.3

Q ss_pred             ccEEEeecCC-----CeEEecCceEEEec----CCeEEEEEEecCCCCC
Q psy3718           2 ENFFFYRGFN-----PRILLGRVLLPIGE----SSFHFDPELLNPSFNG   41 (543)
Q Consensus         2 ~~~~~~~~~~-----~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~   41 (543)
                      ++++||++..     ++.+..++.|.|.+    |+|.|+|.|.|..|..
T Consensus        30 p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~   78 (92)
T cd05757          30 PPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGK   78 (92)
T ss_pred             CcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence            5789988442     23333778999999    9999999999998775

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=97.75  E-value=5.8e-05  Score=55.27  Aligned_cols=40  Identities=13%  Similarity=0.019  Sum_probs=29.8

Q ss_pred             ccEEEeecCC-----CeEE-ec---CceEEEec----CCeEEEEEEecCCCCC
Q psy3718           2 ENFFFYRGFN-----PRIL-LG---RVLLPIGE----SSFHFDPELLNPSFNG   41 (543)
Q Consensus         2 ~~~~~~~~~~-----~~~~-~~---~g~L~I~~----D~G~Y~C~a~n~~g~~   41 (543)
                      |.++|++..+     .++. ..   .+.|.|.+    |+|.|+|.|.|..|..
T Consensus        16 p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   68 (78)
T cd05743          16 PIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMV   68 (78)
T ss_pred             CEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEE
Confidence            6788976432     2332 22   25899999    9999999999999986

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd00096 Ig Immunoglobulin domain

Probab=97.74  E-value=0.0001  Score=52.43  Aligned_cols=66  Identities=27%  Similarity=0.362  Sum_probs=46.0

Q ss_pred             eEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccc
Q psy3718          69 SVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQK  136 (543)
Q Consensus        69 ~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  136 (543)
                      +.|.|.+.+.+.+.+.|++++.........  ..............|.|.++..+|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT--RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccE--EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            478999999778999999988776432211  000000112234579999999999999999998853

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.73  E-value=0.00013  Score=61.01  Aligned_cols=73  Identities=22%  Similarity=0.281  Sum_probs=50.6

Q ss_pred             ceeEeecCCCeEEEEEee-ccCCceEEEccCCeecC----------CCCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          59 RNQTSRRGEPSVLQCEAK-GEKPIGILWNMNNKRLD----------PKSDNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~-g~p~~~i~W~~~~~~i~----------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      ..+.|.+|++++|.|... +...+.++|+|..+.+.          .+-.+|+.+   +..+-..+.|+|.+++.+|+|.
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~---mS~s~~~StItIknVt~sDeGc   99 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEY---LSKSFNESTILIKNVSLKDNGC   99 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEE---eccCCCcceEEEEeCChhhCeE
Confidence            457889999999999984 55678999998643221          001123321   1122234689999999999999


Q ss_pred             EEEEEec
Q psy3718         128 FTCEIKS  134 (543)
Q Consensus       128 Y~C~a~n  134 (543)
                      |+|....
T Consensus       100 Y~C~F~t  106 (189)
T PHA02987        100 YTCIFNT  106 (189)
T ss_pred             EEEEEEe
Confidence            9998765

>KOG4802|consensus

Probab=97.73  E-value=0.0004  Score=64.51  Aligned_cols=118  Identities=25%  Similarity=0.439  Sum_probs=77.8

Q ss_pred             cCCCCccceEEEEEEEEEcCCCCC---CCCccEEEeccCCCCCCCCeeeEEEecC---CCeEEEEeeCCCCCCCCcceeE
Q psy3718         210 VPAPEIIWKTYHIRIVAENEIGSS---EPSDTVTILTAEEAPSGPPTHIKVEATD---QNTLKVSWSPPERDHWNGVIQG  283 (543)
Q Consensus       210 ~p~p~~~w~~y~~~v~a~n~~G~~---~~s~~~~~~t~~~~p~~~P~~~~~~~~~---~~~i~l~W~~~~~~~~~~~i~~  283 (543)
                      .|+     .-|.|++.|+|..|.-   .++.+......+.+|+ +|.++.+..+.   .-...|.|.|+..   +-++..
T Consensus       217 rPg-----Rwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp-~P~dl~l~~v~~dG~~~~~v~w~P~~s---dlPv~~  287 (516)
T KOG4802|consen  217 RPG-----RWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPP-SPNDLKLIGVQFDGRYMLKVVWCPSKS---DLPVEK  287 (516)
T ss_pred             Ccc-----eeEEEEEeeeecccccccCCCCCCCCCCCCCCCCc-CcccceeeeeeecceEEEEEEeCCCCC---CCccee
Confidence            788     8999999999987754   4444444544444554 78888877653   2357788888766   458999


Q ss_pred             EEEEEEEcC-CCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCC
Q psy3718         284 YYVGYKETS-TDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGP  339 (543)
Q Consensus       284 y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~  339 (543)
                      |.|.|...- ............   .-..+...|+.|.|+..|.+.|+|....|.+.
T Consensus       288 Yki~Ws~~v~s~k~~m~tks~~---~k~thq~si~~L~Pns~Y~VevqAi~y~g~~r  341 (516)
T KOG4802|consen  288 YKITWSLYVNSAKASMITKSSY---VKDTHQFSIKELLPNSSYYVEVQAISYLGSRR  341 (516)
T ss_pred             eEEEeehhhhhhhhhcccccce---eeccchhhhhhcCCCCeEEEEEEEEEeccCcc
Confidence            999985432 111110000000   01223445999999999999999999988664

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=97.72  E-value=3.2e-05  Score=58.76  Aligned_cols=34  Identities=26%  Similarity=0.588  Sum_probs=31.2

Q ss_pred             EEEecceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718         508 IASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKT  541 (543)
Q Consensus       508 ~~~~~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~  541 (543)
                      +..+++.+++.+|++++|.|.+.|.|.|++.|+|
T Consensus         4 ~~~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k   37 (92)
T cd05737           4 VGGLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLK   37 (92)
T ss_pred             eccCCceEEEeCCCcEEEEEEEEecCCCeEEEEE
Confidence            3456788999999999999999999999999998

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.72  E-value=7.7e-05  Score=58.01  Aligned_cols=69  Identities=19%  Similarity=0.388  Sum_probs=46.7

Q ss_pred             EeecCCCeEEEEEeeccCCceEEEccCC----eec------CCC----------CCCceEEeeeecCCCceeeEEEEeee
Q psy3718          62 TSRRGEPSVLQCEAKGEKPIGILWNMNN----KRL------DPK----------SDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        62 ~v~~g~~~~l~C~~~g~p~~~i~W~~~~----~~i------~~~----------~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      .+.+|++++|.|.........+.|+|-.    ..+      ...          ...++.+.    ......+|.|.+++
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~----~~~~~~~L~I~~~~   77 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGS----RSSNSFVLTLKNFQ   77 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEE----ecCCEEEEEECCCC
Confidence            4678999999999876655679999733    111      000          01223321    12345689999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      .+|+|.|.|.+.+
T Consensus        78 ~sDsgtY~Ca~~~   90 (104)
T cd05720          78 KENEGYYFCSVAS   90 (104)
T ss_pred             HHHCEEEEEEEcc
Confidence            9999999998865

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=97.72  E-value=6.6e-05  Score=56.63  Aligned_cols=48  Identities=6%  Similarity=-0.112  Sum_probs=34.6

Q ss_pred             ccEEEeecC-----------CCeEEecCceEEEec----CCeEEEEEEec-CCCCC-CCceEEEe
Q psy3718           2 ENFFFYRGF-----------NPRILLGRVLLPIGE----SSFHFDPELLN-PSFNG-FPPLLLSS   49 (543)
Q Consensus         2 ~~~~~~~~~-----------~~~~~~~~g~L~I~~----D~G~Y~C~a~n-~~g~~-~s~~l~v~   49 (543)
                      +.++||+..           +.+....+++|.|.+    |+|.|+|.|.| ..+.. ..++|.|.
T Consensus        25 p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~   89 (91)
T cd05871          25 ASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVI   89 (91)
T ss_pred             ceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEe
Confidence            578998632           245666778899999    99999999984 54433 45667664

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.71  E-value=7.7e-05  Score=57.37  Aligned_cols=82  Identities=13%  Similarity=0.308  Sum_probs=48.3

Q ss_pred             CCeEEee-cceeEeecCCCeEEEEEeec-cC-CceEEEccCCeecCCCCCCceEEeeeecCCCc---eeeEEEEeeecCC
Q psy3718          51 PPEFEIK-LRNQTSRRGEPSVLQCEAKG-EK-PIGILWNMNNKRLDPKSDNRYTIREEILPNGV---LSDLSIKRTERGD  124 (543)
Q Consensus        51 ~p~~~~~-~~~~~v~~g~~~~l~C~~~g-~p-~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D  124 (543)
                      ||.+.+- |.......++.++|.|.+.| .| ..+|.|++||.++.......-...   ..+|.   ++.|.+....-.+
T Consensus         1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~---~~dgty~~~s~L~v~~~~w~~   77 (100)
T cd07699           1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQ---QSDNTYSLSSYLTLTKSDWNK   77 (100)
T ss_pred             CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEE---CCCCCEEEEEEEEEcHHHhCC
Confidence            3544443 33344557788999999998 46 489999999999842211000000   11332   2334443333334


Q ss_pred             CccEEEEEecc
Q psy3718         125 SALFTCEIKSQ  135 (543)
Q Consensus       125 ~G~Y~C~a~n~  135 (543)
                      ...|+|.+...
T Consensus        78 ~~~~sC~V~H~   88 (100)
T cd07699          78 HKVYTCEVTHE   88 (100)
T ss_pred             CCeEEEEEEec
Confidence            68999999885

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=97.71  E-value=3.5e-05  Score=58.57  Aligned_cols=38  Identities=29%  Similarity=0.570  Sum_probs=35.2

Q ss_pred             cCceEEEecceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718         504 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKT  541 (543)
Q Consensus       504 v~~~~~~~~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~  541 (543)
                      +++++...+..+.+..|+.++|.|.+.|.|.|.+.|+|
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k   39 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMR   39 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEE
Confidence            56788888889999999999999999999999999987

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.71  E-value=0.00012  Score=52.92  Aligned_cols=65  Identities=18%  Similarity=0.364  Sum_probs=40.8

Q ss_pred             CeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCc---eeeEEEEeeecCCCccEEEEEecc
Q psy3718          68 PSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGV---LSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        68 ~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      +++|.|.+.|. |. +.|.|+|||+++... ........  ..+|.   ++.|.|......+...|+|.+...
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~-~~~~~~~~--~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSG-VSTTDPLK--NSDGTYFLSSYLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCC-EEECceEE--CCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence            47899999995 55 799999999975321 11110100  12232   345666555667778999999774

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=97.70  E-value=0.00039  Score=52.36  Aligned_cols=32  Identities=19%  Similarity=0.147  Sum_probs=24.5

Q ss_pred             CCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcc
Q psy3718         455 PRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCK  500 (543)
Q Consensus       455 ~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~  500 (543)
                      ....+.+.+|.|+ .|.|+|+|              .+..|.|..+.
T Consensus        55 ~~~~~~i~~l~p~~~Y~~~v~a--------------~~~~~~~~~s~   87 (93)
T cd00063          55 SETSYTLTGLKPGTEYEFRVRA--------------VNGGGESPPSE   87 (93)
T ss_pred             cccEEEEccccCCCEEEEEEEE--------------ECCCccCCCcc
Confidence            3344556699999 99999999              88878776544

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.70  E-value=0.00014  Score=54.77  Aligned_cols=80  Identities=23%  Similarity=0.366  Sum_probs=47.7

Q ss_pred             CeEEeecceeEeecCCCeEEEEEee-ccCCceEEEccCCeecCCCCCCceEEeeeecCCCc---eeeEEEEeeecCCCcc
Q psy3718          52 PEFEIKLRNQTSRRGEPSVLQCEAK-GEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGV---LSDLSIKRTERGDSAL  127 (543)
Q Consensus        52 p~~~~~~~~~~v~~g~~~~l~C~~~-g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~  127 (543)
                      |.|.......... |+.+.|.|.+. |.|.|.|.|+.++..+..   ..... .....++.   .+.|.+......+...
T Consensus         1 p~I~~~~~~~~~~-~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~---~~~~~-~~~~~~~~~~~~S~l~~~~~~~~~~~~   75 (89)
T PF08205_consen    1 PEITPNPSLLEGE-GEEVTLTCSSSGGYPPPQITWYLDGGPVVA---SNTTQ-SSSPDNGLFTVSSTLTLTPTREDHGKT   75 (89)
T ss_dssp             EEEEEECSEEESS-TEEEEEEEEEEEEBS-EEEEEEETTCEECE---EEEEE-EEETTTTTEEEEEEEEEETTGGGTTEE
T ss_pred             CEeeCCCeeEccc-ceEEEEEEEeCCeECCeEEEEEECCCceee---eeeee-eeccCCCcceEEEEEEEEcChHHCCeE
Confidence            4455554444444 88999999765 578899999999987711   01111 11112222   2456665444445678


Q ss_pred             EEEEEeccc
Q psy3718         128 FTCEIKSQK  136 (543)
Q Consensus       128 Y~C~a~n~~  136 (543)
                      ++|.|.+..
T Consensus        76 ~~C~~~~~~   84 (89)
T PF08205_consen   76 LTCRASHPA   84 (89)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEECCc
Confidence            899999863

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=97.68  E-value=4.3e-05  Score=57.50  Aligned_cols=37  Identities=27%  Similarity=0.643  Sum_probs=32.9

Q ss_pred             ceEEEecceEEEeecCceeecceecCCCCCeeeEEec
Q psy3718         506 ARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTF  542 (543)
Q Consensus       506 ~~~~~~~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~~  542 (543)
                      +.+...+..+.+..|++++|.|.+.|.|.|+++|+|-
T Consensus         2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~   38 (88)
T cd04968           2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKV   38 (88)
T ss_pred             CcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEEC
Confidence            4566677889999999999999999999999999983

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.66  E-value=0.00021  Score=55.04  Aligned_cols=79  Identities=20%  Similarity=0.260  Sum_probs=44.8

Q ss_pred             ecceeEeecCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCc---eeeEEEEeeecCCCccEEEE
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGV---LSDLSIKRTERGDSALFTCE  131 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~  131 (543)
                      +|....+..|+.++|.|.+.|. |. ..+.|++||.++................+|.   ++.|.|..-.-.+...|+|.
T Consensus         7 ~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~   86 (102)
T cd05768           7 PPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCV   86 (102)
T ss_pred             CcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEE
Confidence            3444444567899999999994 54 6889999999875321111111100001232   23444432222355789999


Q ss_pred             Eecc
Q psy3718         132 IKSQ  135 (543)
Q Consensus       132 a~n~  135 (543)
                      +...
T Consensus        87 V~H~   90 (102)
T cd05768          87 VGHE   90 (102)
T ss_pred             eEeC
Confidence            9885

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=97.64  E-value=6.1e-05  Score=58.30  Aligned_cols=36  Identities=25%  Similarity=0.537  Sum_probs=32.5

Q ss_pred             ceEEEecceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718         506 ARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKT  541 (543)
Q Consensus       506 ~~~~~~~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~  541 (543)
                      +.+...+..+.+..|++++|.|.+.|.|.|++.|+|
T Consensus         2 P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k   37 (100)
T cd07693           2 PRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLK   37 (100)
T ss_pred             CeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEE
Confidence            456666778999999999999999999999999998

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=97.64  E-value=5.1e-05  Score=56.53  Aligned_cols=31  Identities=10%  Similarity=-0.042  Sum_probs=26.1

Q ss_pred             CceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718          18 RVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus        18 ~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      .++|.|.+    |+|.|+|.|.|..|.. .++.|.|
T Consensus        48 ~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v   83 (84)
T cd05742          48 SSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI   83 (84)
T ss_pred             EEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence            35899998    9999999999999875 5667665

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.62  E-value=0.00037  Score=54.53  Aligned_cols=70  Identities=23%  Similarity=0.427  Sum_probs=44.8

Q ss_pred             eeEeecCCCeEEEEEeec-cCC-ceEEEccCCeecCCCCCCceEEeeeecCCC----ceeeEEEEeeecCCCc-cEEEEE
Q psy3718          60 NQTSRRGEPSVLQCEAKG-EKP-IGILWNMNNKRLDPKSDNRYTIREEILPNG----VLSDLSIKRTERGDSA-LFTCEI  132 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g-~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~D~G-~Y~C~a  132 (543)
                      ......|+.++|.|.+.| .|. .++.|+|||+.+... .......    .++    .++.|.+.. ...|.| .|+|.+
T Consensus        15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~-~~~~~p~----~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V   88 (111)
T cd05772          15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAE-QPNITPE----GDSVSYNVTSTVQVKL-TEDDVHSQVTCEV   88 (111)
T ss_pred             hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccc-ccceeeC----CCCCcEEEEEEEEEEC-ccccccCceEEEE
Confidence            445567899999999998 464 799999999998532 1111111    122    234455553 344444 599999


Q ss_pred             ecc
Q psy3718         133 KSQ  135 (543)
Q Consensus       133 ~n~  135 (543)
                      ...
T Consensus        89 ~H~   91 (111)
T cd05772          89 QHR   91 (111)
T ss_pred             EeC
Confidence            885

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=97.62  E-value=5.4e-05  Score=56.51  Aligned_cols=29  Identities=21%  Similarity=0.525  Sum_probs=27.5

Q ss_pred             ceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718         513 DNFTATYTEDIKLPCLTVGVPAPEIIWKT  541 (543)
Q Consensus       513 ~~~~~~~~~~~~l~c~~~g~p~p~~~w~~  541 (543)
                      +.+.+..|++++|.|.+.|.|.|.++|+|
T Consensus         3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k   31 (86)
T cd05894           3 NTIVVVAGNKLRLDVPISGEPAPTVTWSR   31 (86)
T ss_pred             CEEEEEcCCEEEEEeeEeecCCCeEEEEE
Confidence            56899999999999999999999999987

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.62  E-value=0.0002  Score=55.87  Aligned_cols=69  Identities=19%  Similarity=0.233  Sum_probs=44.2

Q ss_pred             CCCeEEEEEeeccC-------CceEEEccCC-----eec------------CCCCCCceEEeeeecCCCceeeEEEEeee
Q psy3718          66 GEPSVLQCEAKGEK-------PIGILWNMNN-----KRL------------DPKSDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        66 g~~~~l~C~~~g~p-------~~~i~W~~~~-----~~i------------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      |.+++|.|...-.|       .+.|.|.|..     +.+            ......|..+.... .+....+|.|.+++
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~-~~~~~asL~i~nv~   80 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYP-KNRYNASLVLSRLR   80 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCC-CCCceEEEEECCCC
Confidence            78999999966332       3789998741     110            11112233332211 11234689999999


Q ss_pred             cCCCccEEEEEecc
Q psy3718         122 RGDSALFTCEIKSQ  135 (543)
Q Consensus       122 ~~D~G~Y~C~a~n~  135 (543)
                      .+|+|.|.|.....
T Consensus        81 ~~D~G~Y~C~v~~g   94 (110)
T cd05902          81 YSDSGTYRCEVVLG   94 (110)
T ss_pred             HHHCEEEEEEEEEC
Confidence            99999999999884

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.61  E-value=0.00076  Score=51.10  Aligned_cols=69  Identities=17%  Similarity=0.264  Sum_probs=43.8

Q ss_pred             ecCCCeEEEEEeec-cCC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718          64 RRGEPSVLQCEAKG-EKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        64 ~~g~~~~l~C~~~g-~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      ..|+.++|.|.+.| .|. .++.|++||..+..... ......  -.++.......-.+...+...|+|.+...
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~-~~~~~~--~~dgTy~~~s~L~~~~~~~~~ysC~V~H~   82 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVV-STELIP--NGDWTYQILVMLETTPSRGDTYTCVVEHS   82 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCce-ecceEE--CCCCcEEEEEEEEEcCCCCCEEEEEEEeC
Confidence            36899999999999 454 69999999998754210 011111  12333333333344556778999999885

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=97.60  E-value=0.00011  Score=54.82  Aligned_cols=32  Identities=6%  Similarity=0.008  Sum_probs=27.3

Q ss_pred             CceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718          18 RVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS   49 (543)
Q Consensus        18 ~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~   49 (543)
                      ...|.|.+    |+|.|+|.|.|..|.. .++.|.|+
T Consensus        49 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~   85 (86)
T cd05862          49 SSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVH   85 (86)
T ss_pred             eeEEEEecCCcccCEEEEEEEeecceEecccEEEEEe
Confidence            35899998    9999999999998875 66788875

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=97.58  E-value=0.00018  Score=51.22  Aligned_cols=39  Identities=13%  Similarity=0.071  Sum_probs=29.2

Q ss_pred             ccEEEeecC------CCeEEecCceEEEec----CCeEEEEEEecCCCC
Q psy3718           2 ENFFFYRGF------NPRILLGRVLLPIGE----SSFHFDPELLNPSFN   40 (543)
Q Consensus         2 ~~~~~~~~~------~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~   40 (543)
                      |.+.|++..      ..++...+++|.|.+    |+|.|+|.|+|....
T Consensus        13 P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~   61 (72)
T cd07702          13 PEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYN   61 (72)
T ss_pred             CeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccc
Confidence            567888742      134445566999999    999999999997443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=97.58  E-value=8.3e-05  Score=57.10  Aligned_cols=38  Identities=29%  Similarity=0.603  Sum_probs=31.7

Q ss_pred             cCceEEEecceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718         504 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKT  541 (543)
Q Consensus       504 v~~~~~~~~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~  541 (543)
                      |.++|...+....+..|+.++|.|.+.|.|.|+++|+|
T Consensus         1 ~~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~   38 (97)
T cd05869           1 AKPKITYVENQTAMELEEQITLTCEASGDPIPSITWRT   38 (97)
T ss_pred             CCceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEE
Confidence            35667666666666678999999999999999999987

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.57  E-value=0.00027  Score=53.51  Aligned_cols=69  Identities=20%  Similarity=0.297  Sum_probs=43.0

Q ss_pred             CCeEEEEEeecc-CCceEEEccCCe----ec-----------CCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718          67 EPSVLQCEAKGE-KPIGILWNMNNK----RL-----------DPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC  130 (543)
Q Consensus        67 ~~~~l~C~~~g~-p~~~i~W~~~~~----~i-----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  130 (543)
                      ++++|.|..... ....++|.|...    .+           ...-.+|+.+....   ....+|.|.|++.+|+|.|+|
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~---~~d~sI~i~nvt~~D~G~Y~C   77 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNST---REDMSLSFNNATEEDVGLYCC   77 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCC---CCccEEEEcCCCcccCEEEEE
Confidence            468999998643 347889987422    11           00011233322111   123689999999999999999


Q ss_pred             EEecc-cce
Q psy3718         131 EIKSQ-KIS  138 (543)
Q Consensus       131 ~a~n~-~~s  138 (543)
                      ...+- .|+
T Consensus        78 ~~~t~P~g~   86 (96)
T cd05889          78 SLVTYPQGS   86 (96)
T ss_pred             EEEeCCCCC
Confidence            98774 444

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=97.57  E-value=9.5e-05  Score=54.76  Aligned_cols=46  Identities=9%  Similarity=-0.062  Sum_probs=31.7

Q ss_pred             ccEEEeecCCCe-----EE--ecCceEEEec----CCeEEEEEEecCCCCC-CCceEE
Q psy3718           2 ENFFFYRGFNPR-----IL--LGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLL   47 (543)
Q Consensus         2 ~~~~~~~~~~~~-----~~--~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~   47 (543)
                      +.++|++.....     ..  ..+++|.|.+    |+|.|+|.|.|..|.. .+..|.
T Consensus        24 p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   81 (82)
T cd05856          24 PDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD   81 (82)
T ss_pred             CcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence            568898743321     11  2236899999    9999999999999974 334443

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=97.57  E-value=6.5e-05  Score=55.14  Aligned_cols=30  Identities=33%  Similarity=0.761  Sum_probs=27.7

Q ss_pred             cceEEEeecCceeecceecCCCCC-eeeEEe
Q psy3718         512 NDNFTATYTEDIKLPCLTVGVPAP-EIIWKT  541 (543)
Q Consensus       512 ~~~~~~~~~~~~~l~c~~~g~p~p-~~~w~~  541 (543)
                      +..+.+..|+++.|.|.+.|.|.| +|+|.|
T Consensus         5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k   35 (81)
T cd05749           5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQ   35 (81)
T ss_pred             CCceEEcCCCCEEEEEEeeeecCCeEEEEEE
Confidence            456889999999999999999999 799997

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=97.54  E-value=0.0001  Score=54.98  Aligned_cols=45  Identities=13%  Similarity=-0.081  Sum_probs=33.9

Q ss_pred             ccEEEeecCC---CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceE
Q psy3718           2 ENFFFYRGFN---PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLL   46 (543)
Q Consensus         2 ~~~~~~~~~~---~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l   46 (543)
                      +.++|++..+   .+....++.|.|.+    |+|.|+|.|.|..|.. +++.|
T Consensus        32 ~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l   84 (85)
T cd05754          32 YTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL   84 (85)
T ss_pred             cEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence            4578987553   23334578999998    9999999999999986 45554

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.54  E-value=0.00046  Score=53.96  Aligned_cols=69  Identities=17%  Similarity=0.276  Sum_probs=44.4

Q ss_pred             CCCeEEEEEeeccC-----------CceEEEccC-----Ce-----ec----------CCCCCCceEEeeeecCCCceee
Q psy3718          66 GEPSVLQCEAKGEK-----------PIGILWNMN-----NK-----RL----------DPKSDNRYTIREEILPNGVLSD  114 (543)
Q Consensus        66 g~~~~l~C~~~g~p-----------~~~i~W~~~-----~~-----~i----------~~~~~~~~~~~~~~~~~~~~~~  114 (543)
                      |.+++|.|.....|           ...|.|.+-     ++     .+          ......|..+..+... ....+
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~-~g~as   80 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPED-QGDAS   80 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCc-CCceE
Confidence            68899999998654           248999874     11     11          0111223333211111 12368


Q ss_pred             EEEEeeecCCCccEEEEEecc
Q psy3718         115 LSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus       115 L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      |.|.+++.+|+|.|.|...+.
T Consensus        81 L~i~~v~~sD~G~Y~C~V~~g  101 (117)
T cd05901          81 LTIVKLRASDAGVYRCEVMHG  101 (117)
T ss_pred             EEEcccccccCEEEEEEEEEC
Confidence            999999999999999999886

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=97.53  E-value=9.6e-05  Score=53.63  Aligned_cols=24  Identities=21%  Similarity=0.012  Sum_probs=21.6

Q ss_pred             CceEEEec----CCeEEEEEEecCCCCC
Q psy3718          18 RVLLPIGE----SSFHFDPELLNPSFNG   41 (543)
Q Consensus        18 ~g~L~I~~----D~G~Y~C~a~n~~g~~   41 (543)
                      .+.|.|.+    |+|.|+|.|.|..|..
T Consensus        42 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   69 (75)
T cd05750          42 NSELQINKAKLADSGEYTCVVENILGND   69 (75)
T ss_pred             eEEEEEccCCcccCeEEEEEEEEcCCce
Confidence            35899999    9999999999999985

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.52  E-value=0.00036  Score=50.62  Aligned_cols=63  Identities=13%  Similarity=0.239  Sum_probs=44.9

Q ss_pred             eeEeecCCCeEEEEEeeccC--CceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEec
Q psy3718          60 NQTSRRGEPSVLQCEAKGEK--PIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKS  134 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p--~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  134 (543)
                      +..+..|++++|+|.....+  .+.|+|...+...-       ...   ..++  .+|.+..+...|+|.++|.++-
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~-------~~~---~~~~--ktL~~~qv~~qdSG~WtC~V~~   72 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK-------QIL---NQDK--KTLNLVQLGPNDSGTWDCIVSV   72 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc-------eec---cCCc--cEEEeceeCcccCCEEEEEEEE
Confidence            44678899999999995544  45999996544321       000   0111  3799999999999999999964

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=97.52  E-value=0.00017  Score=54.34  Aligned_cols=40  Identities=13%  Similarity=0.038  Sum_probs=29.3

Q ss_pred             ccEEEeecC--------CCeEEec-CceEEEec----CCeEEEEEEecCCCCC
Q psy3718           2 ENFFFYRGF--------NPRILLG-RVLLPIGE----SSFHFDPELLNPSFNG   41 (543)
Q Consensus         2 ~~~~~~~~~--------~~~~~~~-~g~L~I~~----D~G~Y~C~a~n~~g~~   41 (543)
                      +.++|++..        +++++.. +|+|.|.+    |+|.|+|.|.|..+..
T Consensus        34 p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          34 LSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             CEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            356776642        2344443 79999999    9999999999976543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.48  E-value=0.00019  Score=54.47  Aligned_cols=31  Identities=3%  Similarity=0.107  Sum_probs=23.7

Q ss_pred             CceEEEec----CCeEEEEEEecCCCCCCCceEEE
Q psy3718          18 RVLLPIGE----SSFHFDPELLNPSFNGFPPLLLS   48 (543)
Q Consensus        18 ~g~L~I~~----D~G~Y~C~a~n~~g~~~s~~l~v   48 (543)
                      +.+|.|.+    |+|.|+|.+.......+.+.|+|
T Consensus        61 ~~~L~I~nV~~~D~G~YtC~~~t~~~~~~~~~~~v   95 (95)
T cd05882          61 ELIISISNVQLSDEGEYTCSIFTMPVRTAKATVTV   95 (95)
T ss_pred             eEEEEECCCCcccCEEEEEEEEeeccccEEEEEEC
Confidence            36999999    99999999998443445566654

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>PHA03376 BARF1; Provisional

Probab=97.44  E-value=0.0025  Score=53.11  Aligned_cols=70  Identities=9%  Similarity=0.032  Sum_probs=49.9

Q ss_pred             eEEEec----CCeEEEEEEecCCCCCC-CceEEEeCCCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCC
Q psy3718          20 LLPIGE----SSFHFDPELLNPSFNGF-PPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNN   89 (543)
Q Consensus        20 ~L~I~~----D~G~Y~C~a~n~~g~~~-s~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~   89 (543)
                      +|.|.+    |.|.|+|...-...... --+|.+-.|-.+.+......+..-+..++.|.+.|.|.|.+.|+-+.
T Consensus        88 sLvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~  162 (221)
T PHA03376         88 FLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPE  162 (221)
T ss_pred             EEEEEeeeecCCceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheecccc
Confidence            889998    99999998887432222 23566666665555544434444677899999888999999999653

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=97.38  E-value=0.00014  Score=55.03  Aligned_cols=30  Identities=17%  Similarity=0.392  Sum_probs=27.3

Q ss_pred             cceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718         512 NDNFTATYTEDIKLPCLTVGVPAPEIIWKT  541 (543)
Q Consensus       512 ~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~  541 (543)
                      +..+.+..|++++|.|.+.|.|.|+|.|+|
T Consensus         7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~   36 (90)
T cd04972           7 PNATVVYEGGTATIRCTAEGSPLPKVEWII   36 (90)
T ss_pred             CcCEEEcCCCcEEEEEEEEEcCCCeEEEEE
Confidence            455668999999999999999999999998

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.36  E-value=0.0022  Score=47.44  Aligned_cols=68  Identities=18%  Similarity=0.275  Sum_probs=44.9

Q ss_pred             cCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718          65 RGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        65 ~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      .++.++|.|.+.|. |. ..|.|+++|..+..........   ...+|.........+...+...|+|.+...
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~---~~~dgty~~~s~l~v~~~~~~~ysC~V~H~   76 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPP---PNSDGTYSVTSSLTVTWNSGDEYSCRVTHE   76 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEE---EETTSEEEEEEEEEEETTTTGGEEEEEEET
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccc---cccccceeeeEEEEecCCCCCEEEEEEEEC
Confidence            38999999999984 54 6899999999875321111111   114555444444445566777999999875

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>smart00406 IGv Immunoglobulin V-Type

Probab=97.35  E-value=0.0005  Score=50.63  Aligned_cols=62  Identities=21%  Similarity=0.303  Sum_probs=40.4

Q ss_pred             CeEEEEEeeccCC--ceEEEccCCe--e---cCC-----------CCCCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718          68 PSVLQCEAKGEKP--IGILWNMNNK--R---LDP-----------KSDNRYTIREEILPNGVLSDLSIKRTERGDSALFT  129 (543)
Q Consensus        68 ~~~l~C~~~g~p~--~~i~W~~~~~--~---i~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~  129 (543)
                      +++|.|.+.....  ..+.|++...  .   +..           ....++.+...  ......+|.|.+++.+|+|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~   78 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKD--TSKNDVSLTISNLRVEDTGTYY   78 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEec--CcCCEEEEEEcCCCHHHCEEEE
Confidence            4789999887654  3889987542  1   100           11234443322  1244578999999999999999


Q ss_pred             EE
Q psy3718         130 CE  131 (543)
Q Consensus       130 C~  131 (543)
                      |.
T Consensus        79 C~   80 (81)
T smart00406       79 CA   80 (81)
T ss_pred             Ec
Confidence            96

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=97.35  E-value=0.00045  Score=52.06  Aligned_cols=47  Identities=13%  Similarity=0.023  Sum_probs=33.7

Q ss_pred             ccEEEeecCC---------CeEEecCceEEEec----CCeEEEEEEecCCCCCC--CceEEE
Q psy3718           2 ENFFFYRGFN---------PRILLGRVLLPIGE----SSFHFDPELLNPSFNGF--PPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~~---------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~~--s~~l~v   48 (543)
                      +.++|++...         .++....+.|.|.+    |+|.|+|.|.|..+...  +..|.|
T Consensus        25 ~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V   86 (89)
T cd04979          25 ASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNV   86 (89)
T ss_pred             ceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEE
Confidence            4678887542         24455567899998    99999999998776543  445555

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.34  E-value=0.00053  Score=51.87  Aligned_cols=36  Identities=11%  Similarity=0.178  Sum_probs=27.5

Q ss_pred             cceeEeecCCCeEEEEEeec-cCC-ceEEEccCCeecC
Q psy3718          58 LRNQTSRRGEPSVLQCEAKG-EKP-IGILWNMNNKRLD   93 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g-~p~-~~i~W~~~~~~i~   93 (543)
                      |.......+..++|.|.|.| .|. .++.|++||..+.
T Consensus         8 ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~   45 (96)
T cd07697           8 PSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSI   45 (96)
T ss_pred             CCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence            34344445678999999999 454 7899999999874

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.30  E-value=0.00066  Score=51.57  Aligned_cols=76  Identities=14%  Similarity=0.167  Sum_probs=43.4

Q ss_pred             eecceeEeecCCCeEEEEEeecc--CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecC---CCccEE
Q psy3718          56 IKLRNQTSRRGEPSVLQCEAKGE--KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERG---DSALFT  129 (543)
Q Consensus        56 ~~~~~~~v~~g~~~~l~C~~~g~--p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~---D~G~Y~  129 (543)
                      .+|....+..|+.++|.|.+.|.  |. ..+.|+||+........ ...   ....+|.........+.++   +.-.|+
T Consensus         4 ~pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~-~~~---~~~~dgty~~~s~l~v~~~~w~~g~~ys   79 (96)
T cd07696           4 LPPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASI-QPP---ESHNNATLSVTSTLNVSTDDWISGDTFQ   79 (96)
T ss_pred             cCcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEe-ccc---ccCCCCCEEEEEEEEeCHHHccCCCcEE
Confidence            34444556679999999999998  54 78899998743211110 000   0112332222222233333   345899


Q ss_pred             EEEecc
Q psy3718         130 CEIKSQ  135 (543)
Q Consensus       130 C~a~n~  135 (543)
                      |.+...
T Consensus        80 C~V~H~   85 (96)
T cd07696          80 CKVTHP   85 (96)
T ss_pred             EEEECC
Confidence            999885

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=97.30  E-value=0.00044  Score=51.25  Aligned_cols=37  Identities=16%  Similarity=0.005  Sum_probs=28.9

Q ss_pred             ccEEEeec------CCCeEEecCceEEEec----CCeEEEEEEecCC
Q psy3718           2 ENFFFYRG------FNPRILLGRVLLPIGE----SSFHFDPELLNPS   38 (543)
Q Consensus         2 ~~~~~~~~------~~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~   38 (543)
                      +.++|++.      ++.++.+.++.|.|.|    |+|.|+|.|.+..
T Consensus        25 ~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873          25 ARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             CeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            35677653      2256778889999999    9999999999864

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=97.29  E-value=0.00045  Score=51.27  Aligned_cols=31  Identities=10%  Similarity=-0.016  Sum_probs=23.6

Q ss_pred             CceEEEec----CCeEEEEEEecCCCCC---CCceEEE
Q psy3718          18 RVLLPIGE----SSFHFDPELLNPSFNG---FPPLLLS   48 (543)
Q Consensus        18 ~g~L~I~~----D~G~Y~C~a~n~~g~~---~s~~l~v   48 (543)
                      ..+|.|.+    |+|.|+|.|.|..+..   .+..|+|
T Consensus        45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V   82 (84)
T cd05861          45 RSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITV   82 (84)
T ss_pred             EEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEE
Confidence            35899998    9999999999987632   3445555

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.28  E-value=0.00047  Score=52.50  Aligned_cols=30  Identities=10%  Similarity=0.133  Sum_probs=24.9

Q ss_pred             ceEEEec----CCeEEEEEEecCCCCCCCceEEE
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSFNGFPPLLLS   48 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g~~~s~~l~v   48 (543)
                      .+|.|.+    |+|.|+|.+.+..+...++.|.|
T Consensus        62 ~sL~I~~v~~~DsG~Y~C~~~t~~~~~~~~~l~v   95 (95)
T cd07701          62 LSISISDVSLSDEGQYTCSLFTMPVKTSKAYLTV   95 (95)
T ss_pred             EEEEECcCCcccCEEEEEEeEeecCccEEEEEEC
Confidence            5899999    99999999999655556677765

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.27  E-value=0.00044  Score=51.16  Aligned_cols=44  Identities=14%  Similarity=0.061  Sum_probs=31.8

Q ss_pred             ccEEEeecCCCeEE-ecCceEEEec----CCeEEEEEEecCCCCCCCce
Q psy3718           2 ENFFFYRGFNPRIL-LGRVLLPIGE----SSFHFDPELLNPSFNGFPPL   45 (543)
Q Consensus         2 ~~~~~~~~~~~~~~-~~~g~L~I~~----D~G~Y~C~a~n~~g~~~s~~   45 (543)
                      .++.||+..+.... ..+++|.|.+    |+|.|+|.|.|..|...|..
T Consensus        30 ~~~~w~k~g~~~~~~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~   78 (83)
T cd05753          30 YKVTYYRDGKAKKYSHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEP   78 (83)
T ss_pred             eEEEEEECCeEccccCCCceEEECccCHHHCEEEEEEEEeCCceecCCC
Confidence            35788875432221 2356899988    99999999999998765543

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.21  E-value=0.00059  Score=46.35  Aligned_cols=52  Identities=19%  Similarity=0.394  Sum_probs=36.3

Q ss_pred             ecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718          64 RRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        64 ~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      ..|.+|+|+|......   +.|.+++..+.. .+.               .+...+-. +++|.|.|.+.+.
T Consensus         5 isGTtVtlTCP~~~~~---i~W~~n~~~~~g-~~~---------------~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           5 ISGTTVTVTCPLSGDD---IKWKKNDQVSQG-SDE---------------KYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EeccEEEEECCCCCCC---ceEEeCCccCCC-CCc---------------eEEeeccC-CCCceEEEEeCCC
Confidence            3589999999976433   999999966642 111               23334444 8899999999763

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.21  E-value=0.00087  Score=52.64  Aligned_cols=84  Identities=21%  Similarity=0.312  Sum_probs=48.3

Q ss_pred             CCeEEe-ecceeEeecCCCeEEEEEeec-cCC-ceEEEccCCeecCCCCCCceEEeeeecCCCc---eeeEEEEeeecCC
Q psy3718          51 PPEFEI-KLRNQTSRRGEPSVLQCEAKG-EKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGV---LSDLSIKRTERGD  124 (543)
Q Consensus        51 ~p~~~~-~~~~~~v~~g~~~~l~C~~~g-~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D  124 (543)
                      +|.+.+ .|.......++.++|.|.+.| .|. ..|.|+||+..+............  ..++.   ++.|.|....-.|
T Consensus         2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~--~~~gTYs~~S~L~v~~~~w~~   79 (115)
T cd05769           2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALR--ENTSTYSISSRLRVSATEWFN   79 (115)
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceec--CCCCeEEEEEEEEEChHHhcc
Confidence            454433 344444556788999999999 455 699999999987532211111110  01122   2345544332223


Q ss_pred             -CccEEEEEeccc
Q psy3718         125 -SALFTCEIKSQK  136 (543)
Q Consensus       125 -~G~Y~C~a~n~~  136 (543)
                       ...|+|.+....
T Consensus        80 ~~~~ytC~V~H~g   92 (115)
T cd05769          80 PRNTFTCIVQFYG   92 (115)
T ss_pred             CCCeEEEEEEEeC
Confidence             568999998753

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.20  E-value=0.00055  Score=51.69  Aligned_cols=35  Identities=23%  Similarity=0.479  Sum_probs=32.1

Q ss_pred             eEEEecceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718         507 RIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKT  541 (543)
Q Consensus       507 ~~~~~~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~  541 (543)
                      ++...+..+.+..|+.++|.|.+.|.|.|.++|+|
T Consensus         2 ~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~   36 (90)
T PF07679_consen    2 VFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYK   36 (90)
T ss_dssp             EEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEE
T ss_pred             EEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccc
Confidence            45667788999999999999999999999999997

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>TIGR00864 PCC polycystin cation channel protein

Probab=97.20  E-value=0.88  Score=54.34  Aligned_cols=64  Identities=9%  Similarity=0.034  Sum_probs=42.2

Q ss_pred             CCeEEEE--EEecCCCCC-CCceEEEeCCC-eEEeecceeEeecCCCeEEEEEeeccCCceEEEccCC
Q psy3718          26 SSFHFDP--ELLNPSFNG-FPPLLLSSAPP-EFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNN   89 (543)
Q Consensus        26 D~G~Y~C--~a~n~~g~~-~s~~l~v~~~p-~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~   89 (543)
                      ..|.|+-  .|.|..|.. .+..+.|..|. -+...+....+..+..+.|.=...........|...+
T Consensus      1482 ~~GtYtVtLTvtN~~Gsst~T~~VtV~~pV~~~tinas~~~vpl~~sV~Fta~~s~Gs~v~ysWdFGD 1549 (2740)
T TIGR00864      1482 SPGDFNIRLAAANEVGKNEATLNVAVKARVRGLTINASLTNVPLNGSVHFEAHLDAGDDVRFSWILCD 1549 (2740)
T ss_pred             CCceEEEEEEEECCCCceEEEEEEEEeccccceEEcCCCccccccceEEEEEEccCCCceeEEEEeCC
Confidence            7899988  688888875 34566665543 2444455555666777888754444445788998754

Note: this model has been restricted to the amino half because for technical reasons.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=97.17  E-value=0.00074  Score=51.57  Aligned_cols=31  Identities=6%  Similarity=0.053  Sum_probs=24.0

Q ss_pred             CceEEEec----CCeEEEEEEecCCCCCCCceEEE
Q psy3718          18 RVLLPIGE----SSFHFDPELLNPSFNGFPPLLLS   48 (543)
Q Consensus        18 ~g~L~I~~----D~G~Y~C~a~n~~g~~~s~~l~v   48 (543)
                      +.+|.|.+    |+|.|+|.+.+.....+++.|+|
T Consensus        61 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~v   95 (95)
T cd05717          61 ELSISISNVSLSDEGRYTCSLYTMPVQTAKATVTV   95 (95)
T ss_pred             eeEEEEccCCcccCEEEEEEEecCCCceEEEEEEC
Confidence            35899999    99999999998765445566654

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>smart00060 FN3 Fibronectin type 3 domain

Probab=97.17  E-value=0.0027  Score=46.25  Aligned_cols=19  Identities=16%  Similarity=0.069  Sum_probs=16.2

Q ss_pred             CccccccccCc-eeeEEEEe
Q psy3718         457 GRNMYEELKSQ-GRGYLVPR  475 (543)
Q Consensus       457 ~~~~~~~L~p~-~Y~~~v~A  475 (543)
                      ..+.+.+|.|+ .|.|+|+|
T Consensus        57 ~~~~i~~L~~~~~Y~v~v~a   76 (83)
T smart00060       57 TSYTLTGLKPGTEYEFRVRA   76 (83)
T ss_pred             cEEEEeCcCCCCEEEEEEEE
Confidence            44556699999 99999999

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.16  E-value=0.0008  Score=48.97  Aligned_cols=44  Identities=11%  Similarity=-0.069  Sum_probs=29.6

Q ss_pred             cEEEeecCCCeEEecCceEEEec---CCeEEEEEEecCCCCCCCceEEE
Q psy3718           3 NFFFYRGFNPRILLGRVLLPIGE---SSFHFDPELLNPSFNGFPPLLLS   48 (543)
Q Consensus         3 ~~~~~~~~~~~~~~~~g~L~I~~---D~G~Y~C~a~n~~g~~~s~~l~v   48 (543)
                      .++|++... .+...+++|.|.+   |+|.|+|.|.|. ..+..+.|.|
T Consensus        32 ~~~W~kng~-~l~~~~~~l~i~~~~~dsG~Y~C~a~~~-~~S~~v~l~V   78 (78)
T cd05752          32 STQWYHNGK-LLETTTNSYRIRAANNDSGEYRCQTQGS-SLSDPVHLEV   78 (78)
T ss_pred             cEEEEECCE-EeeccCCeEEEeecccCCEEeEEECCCC-cCCCCEEEeC
Confidence            478887532 2235677999986   999999999985 2223345543

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=97.02  E-value=0.0011  Score=49.99  Aligned_cols=40  Identities=15%  Similarity=0.098  Sum_probs=28.6

Q ss_pred             ccEEEeecCCC------eEEe--cCceEEEec----CCeEEEEEEecCCCCC
Q psy3718           2 ENFFFYRGFNP------RILL--GRVLLPIGE----SSFHFDPELLNPSFNG   41 (543)
Q Consensus         2 ~~~~~~~~~~~------~~~~--~~g~L~I~~----D~G~Y~C~a~n~~g~~   41 (543)
                      +.++||++...      ++..  .++.|.|.+    |+|.|+|.|.+..|..
T Consensus        30 ~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~   81 (95)
T cd05897          30 VELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK   81 (95)
T ss_pred             CcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence            46899885431      2221  235899999    9999999999987653

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=96.90  E-value=0.00088  Score=51.16  Aligned_cols=30  Identities=30%  Similarity=0.596  Sum_probs=27.0

Q ss_pred             cceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718         512 NDNFTATYTEDIKLPCLTVGVPAPEIIWKT  541 (543)
Q Consensus       512 ~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~  541 (543)
                      +..+.+..|+++.|.|.+.|.|.|++.|+|
T Consensus         6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k   35 (95)
T cd05722           6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKK   35 (95)
T ss_pred             CCCeEEcCCCCEEEeeecccCCCCEEEEEE
Confidence            455677889999999999999999999997

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=96.90  E-value=0.0016  Score=49.08  Aligned_cols=37  Identities=11%  Similarity=0.055  Sum_probs=27.0

Q ss_pred             ccEEEeecC------CCeEE-ecCceEEEec----CCe-EEEEEEecCC
Q psy3718           2 ENFFFYRGF------NPRIL-LGRVLLPIGE----SSF-HFDPELLNPS   38 (543)
Q Consensus         2 ~~~~~~~~~------~~~~~-~~~g~L~I~~----D~G-~Y~C~a~n~~   38 (543)
                      |.+.|+...      +.|+. ..+|+|.|.+    |+| .|.|.|.|..
T Consensus        34 P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~   82 (95)
T cd05845          34 LRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG   82 (95)
T ss_pred             CEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccc
Confidence            345665422      34444 4579999999    999 8999999975

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.87  E-value=0.0069  Score=45.91  Aligned_cols=67  Identities=15%  Similarity=0.319  Sum_probs=38.4

Q ss_pred             cCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC---CccEEEEEecc
Q psy3718          65 RGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD---SALFTCEIKSQ  135 (543)
Q Consensus        65 ~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D---~G~Y~C~a~n~  135 (543)
                      .++.++|.|.+.|. |. .+|.|+|||.. .......-.+..   .+|.......-.+.+.|   .-.|+|.+...
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~---~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~   86 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQ---SGGLYTASSQLTVPASEWKGKESFYCKVEHP   86 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeC---CCCCEEEEEEEEEeHHHcCCCCcEEEEEEeC
Confidence            46779999999994 54 79999999997 321100001110   12322222222344444   56799999874

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=96.81  E-value=0.0024  Score=48.50  Aligned_cols=36  Identities=14%  Similarity=0.126  Sum_probs=29.1

Q ss_pred             cEEEeecC---C---------CeEEecCceEEEec----CCeEEEEEEecCC
Q psy3718           3 NFFFYRGF---N---------PRILLGRVLLPIGE----SSFHFDPELLNPS   38 (543)
Q Consensus         3 ~~~~~~~~---~---------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~   38 (543)
                      ++.|||+.   +         .|+...+..|.|..    |+|.|+|++.|..
T Consensus        42 ~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t   93 (104)
T cd05896          42 SLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLRNST   93 (104)
T ss_pred             eEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEECCCC
Confidence            67888862   1         26677788999998    9999999999964

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>KOG3632|consensus

Probab=96.75  E-value=0.0072  Score=62.71  Aligned_cols=143  Identities=21%  Similarity=0.270  Sum_probs=97.1

Q ss_pred             eEEEEEEEEEcCCCCCCCCccEEEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCc
Q psy3718         218 KTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPF  297 (543)
Q Consensus       218 ~~y~~~v~a~n~~G~~~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~  297 (543)
                      ..|.+.+.+....|.......+.. +...++ ..|.++++...+..+..++|-+...+     . .. +.|.......  
T Consensus       643 ~s~~isvq~ltSrGsqd~lrc~Ll-vgg~a~-vvpsqlrv~n~tqtSa~itwvp~nsn-----~-~H-viyln~eE~~--  711 (1335)
T KOG3632|consen  643 HSGYISVQRLTSRGSQDQLRCILL-VGGAAP-VVPSQLRVWNATQTSAMITWVPFNSN-----F-LH-VIYLNAEEPR--  711 (1335)
T ss_pred             CceeeehhhhhccCCCCcceeeEe-cccccc-ccchhhhhhhhhchhhheeeeecCCC-----c-ce-eeecCCccCC--
Confidence            356777777788887765544333 333444 58889999999999999999987543     1 11 2232222111  


Q ss_pred             eEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeC-CC--------CCCCCcceeeeccCCCCCCCCCCcEEEEe-cc
Q psy3718         298 LFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNK-LG--------PGPMSEEVKQYTAEGTPEQPPQDNTCTTL-TS  367 (543)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~-~G--------~s~~s~~~~~~t~~~~p~~~P~~~~~~~~-~~  367 (543)
                              ........|++.+|.|++.|.++|-+.-. .+        .+.....+.|.|....|+.||.++.+..- ++
T Consensus       712 --------ps~a~~y~ytf~~lrpgt~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~sp  783 (1335)
T KOG3632|consen  712 --------PSVAEMYNYTFMRLRPGTDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSP  783 (1335)
T ss_pred             --------CchhhhhHHHHhccCCCCccceecccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCC
Confidence                    11224457788999999999999988644 11        12235567888988888889999888763 56


Q ss_pred             CeEEEEccCCCC
Q psy3718         368 QTIRVSWVSPPL  379 (543)
Q Consensus       368 ~~v~l~W~~p~~  379 (543)
                      ..+.++|.||..
T Consensus       784 g~l~vswrPptl  795 (1335)
T KOG3632|consen  784 GRLEVSWRPPTL  795 (1335)
T ss_pred             ceeeeeccCcee
Confidence            789999998843

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=96.68  E-value=0.0035  Score=43.06  Aligned_cols=38  Identities=16%  Similarity=0.053  Sum_probs=26.9

Q ss_pred             ccEEEeecCC-----CeEEecCceEEEec----CCeEEEEEEecCCC
Q psy3718           2 ENFFFYRGFN-----PRILLGRVLLPIGE----SSFHFDPELLNPSF   39 (543)
Q Consensus         2 ~~~~~~~~~~-----~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g   39 (543)
                      +.+.|++...     ......++.|.|.+    |+|.|+|.+.|..|
T Consensus        17 ~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408       17 PNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            3577876322     12224466899999    99999999999765

>KOG4152|consensus

Probab=96.65  E-value=0.0078  Score=57.97  Aligned_cols=75  Identities=32%  Similarity=0.471  Sum_probs=54.9

Q ss_pred             ECCCCCCCEEEEEEEEEeCCCCCCCCcceeeeccC-CCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEE
Q psy3718         316 LSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE-GTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY  393 (543)
Q Consensus       316 i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t~~-~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~  393 (543)
                      -..|.+++.|.|+|.|+|..|.++++....+.|.. +.|. .|..+++. .+-..+.+.|.+|.- ...|.|..|..+.
T Consensus       651 k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~-apS~~ri~-k~~eGi~l~weppt~-p~sg~Iieys~yl  726 (830)
T KOG4152|consen  651 KTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPT-APSGARIK-KTIEGISLVWEPPTK-PGSGTIIEYSPYL  726 (830)
T ss_pred             ccccccccceeeeeeeeeccCCCchhhheeeeeccCCCCC-Cccccccc-ccccceeecccCCCC-CCCcceEEeehhh
Confidence            36799999999999999999999999999988853 4444 55655543 344578999998732 2256666666553

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=96.64  E-value=0.0025  Score=49.29  Aligned_cols=28  Identities=11%  Similarity=0.161  Sum_probs=23.5

Q ss_pred             eEEecCceEEEec----CCeEEEEEEecCCCC
Q psy3718          13 RILLGRVLLPIGE----SSFHFDPELLNPSFN   40 (543)
Q Consensus        13 ~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~   40 (543)
                      ..+..||+|.|.+    |+|.|+|.+.|..+.
T Consensus        64 ~~~~~ngSL~I~~v~~~D~G~Y~~~v~~~~~~   95 (105)
T cd05774          64 ETIYPNGSLLIQNVTQKDTGFYTLQTITTNFQ   95 (105)
T ss_pred             EEEeCCCcEEEecCCcccCEEEEEEEEeCCcc
Confidence            3446789999999    999999999997644

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.62  E-value=0.0098  Score=45.06  Aligned_cols=64  Identities=19%  Similarity=0.385  Sum_probs=40.2

Q ss_pred             cCCCeEEEEEee-ccCCceEEEccCCeecCCCCCCceEEeeeecCCCc---eeeEEEEeeecCCCccEEEEEecc
Q psy3718          65 RGEPSVLQCEAK-GEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGV---LSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        65 ~g~~~~l~C~~~-g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      ......+.|.+. |.|.+.|.|+++..     ..  .........+|.   .+.|.+......|.-.|+|.+.+.
T Consensus        14 ~~~~~va~C~s~~gkP~a~ItW~~~~~-----~~--~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~   81 (95)
T cd05719          14 GEPVTVATCVSANGKPPATISWETTLG-----GE--AETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHP   81 (95)
T ss_pred             CCccEEEEEECCCCcCCCEEEEEeCCC-----Cc--ceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCc
Confidence            345668899995 68999999998711     11  111111122332   356777655566677899999996

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.57  E-value=0.017  Score=44.79  Aligned_cols=76  Identities=8%  Similarity=0.127  Sum_probs=50.7

Q ss_pred             ecceeEeecCCCeEEEEEeeccCC---ceEEEccCCe-ec------------CCCCCCceEEeeeecCCCceeeEEEEee
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKGEKP---IGILWNMNNK-RL------------DPKSDNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g~p~---~~i~W~~~~~-~i------------~~~~~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      ++....+.+|..++|.|.++|...   -.+.|+|... .+            ......++++....  +...-+|.+.++
T Consensus         4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~--s~ntv~L~l~~L   81 (115)
T cd05721           4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTL--GNEQVNFTLQNL   81 (115)
T ss_pred             ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeC--CCCEEEEEEcCC
Confidence            445566788999999999987543   4677887321 10            00123445554442  333468999999


Q ss_pred             ecCCCccEEEEEec
Q psy3718         121 ERGDSALFTCEIKS  134 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n  134 (543)
                      +.+|++.|.|....
T Consensus        82 ~a~DTa~Y~Ca~e~   95 (115)
T cd05721          82 RANQTDIYFCKIEL   95 (115)
T ss_pred             CHHHCeEEEEEeee
Confidence            99999999997754

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.57  E-value=0.0094  Score=45.20  Aligned_cols=75  Identities=13%  Similarity=0.153  Sum_probs=42.9

Q ss_pred             EeecceeEeecCCCeEEEEEeecc--C-CceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC--C-ccE
Q psy3718          55 EIKLRNQTSRRGEPSVLQCEAKGE--K-PIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD--S-ALF  128 (543)
Q Consensus        55 ~~~~~~~~v~~g~~~~l~C~~~g~--p-~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D--~-G~Y  128 (543)
                      +.+|.......++.++|.|.+.|.  | ...|.|.++|.. .....  ...   ...++..+....-.+..+|  + ..|
T Consensus         8 l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t--~~~---~~~dgTys~~S~L~v~~~~W~~g~~y   81 (99)
T cd04986           8 LQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQT--SAE---SDQCGCYSVSSVLPGCAEEWNKGEPF   81 (99)
T ss_pred             EECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEc--Ccc---cCCCCCEEEEEEEEeCHHHhcCCCeE
Confidence            344544445578999999999993  4 379999999875 11110  000   1123332222333333433  3 459


Q ss_pred             EEEEecc
Q psy3718         129 TCEIKSQ  135 (543)
Q Consensus       129 ~C~a~n~  135 (543)
                      +|.+...
T Consensus        82 tC~V~H~   88 (99)
T cd04986          82 ACTVTHP   88 (99)
T ss_pred             EEEEECC
Confidence            9999885

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=96.55  E-value=0.0031  Score=48.46  Aligned_cols=30  Identities=20%  Similarity=0.525  Sum_probs=26.7

Q ss_pred             cceEEEeecCceeecceecCCCCC-eeeEEe
Q psy3718         512 NDNFTATYTEDIKLPCLTVGVPAP-EIIWKT  541 (543)
Q Consensus       512 ~~~~~~~~~~~~~l~c~~~g~p~p-~~~w~~  541 (543)
                      +..+.+..|+++.|.|.+.|.|.| .|.|+|
T Consensus         8 ~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~   38 (98)
T cd05758           8 EATQYAILGDKGRVECFIFSTPPPDRIVWTW   38 (98)
T ss_pred             CCcEEEeCCCcEEEEEEEcccCCCCEeEEEE
Confidence            456778999999999999999999 599987

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology

Probab=96.51  E-value=0.014  Score=45.61  Aligned_cols=89  Identities=30%  Similarity=0.374  Sum_probs=53.9

Q ss_pred             CCCeeeEEEecCCCeEEEEeeCCCC----CCCC------cceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCC
Q psy3718         250 GPPTHIKVEATDQNTLKVSWSPPER----DHWN------GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSL  319 (543)
Q Consensus       250 ~~P~~~~~~~~~~~~i~l~W~~~~~----~~~~------~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L  319 (543)
                      +||. +.+ ....+.|.|.+.+|..    ...+      -....|.|.|+..++...  ....     ......+.|.+|
T Consensus         4 gPP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~--~~~~-----~~~~~~~~l~~L   74 (106)
T PF09294_consen    4 GPPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEK--KKEI-----ETKNSSVTLSDL   74 (106)
T ss_dssp             -SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCE--EEEE-----ESSSEEEEEES-
T ss_pred             cCCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccc--eEEE-----eecCCEEEEeCC
Confidence            3564 777 4567889999998861    0001      013579999999887621  1111     235567799999


Q ss_pred             CCCCEEEEEEEEEeCCC--CCCCCcceeee
Q psy3718         320 KTYTQYSVVVQALNKLG--PGPMSEEVKQY  347 (543)
Q Consensus       320 ~p~t~Y~~~V~a~n~~G--~s~~s~~~~~~  347 (543)
                      .|++.|.|+|++....-  .|.+|.+.-++
T Consensus        75 ~p~t~YCv~V~~~~~~~~~~s~~S~~~C~~  104 (106)
T PF09294_consen   75 KPGTNYCVSVQAFSPSQNKNSQPSEPQCIT  104 (106)
T ss_dssp             -TTSEEEEEEEEEECSSTEEEEEBSEEEEE
T ss_pred             CCCCCEEEEEEEEeccCCCcCCCCCCEeEe
Confidence            99999999999943321  34555554443

They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....

>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi

Probab=96.50  E-value=0.7  Score=42.81  Aligned_cols=81  Identities=23%  Similarity=0.356  Sum_probs=50.8

Q ss_pred             ceeEEEECCCCCCCEEEEEEEEEeCCCCCCCCccee-eeccCCCC--CCCCCCcEEEEe----ccCeEEEEccCCCCCCC
Q psy3718         310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVK-QYTAEGTP--EQPPQDNTCTTL----TSQTIRVSWVSPPLITA  382 (543)
Q Consensus       310 ~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~~-~~t~~~~p--~~~P~~~~~~~~----~~~~v~l~W~~p~~~~~  382 (543)
                      .-..+.+.++.|+..|.+++.+.|... +.....+. ..|.+...  +.-|.+..+...    +-++++|.|.+.+.   
T Consensus       126 ~~~~f~l~~~~~g~~Yliri~~~~~~e-~~~~~kV~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d---  201 (300)
T PF10179_consen  126 GLRHFRLSGVKPGERYLIRIQISNSDE-GPSTFKVQAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPD---  201 (300)
T ss_pred             ceEEEEECCCCCCCeEEEEEEccCCCC-CceEEEEEEecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecCCC---
Confidence            456889999999999999998876543 22222233 33333211  235677777544    45799999997532   


Q ss_pred             CCceEEEEEEEEeC
Q psy3718         383 NGVIKGYKVVYGPS  396 (543)
Q Consensus       383 ~~~i~~Y~v~~~~~  396 (543)
                       .. ..|=|..+..
T Consensus       202 -~~-~kYCvy~~~~  213 (300)
T PF10179_consen  202 -RS-IKYCVYRREE  213 (300)
T ss_pred             -CC-ceEEEEEEEe
Confidence             22 4676666554

The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.

>KOG4367|consensus

Probab=96.46  E-value=0.0047  Score=57.78  Aligned_cols=82  Identities=29%  Similarity=0.451  Sum_probs=65.1

Q ss_pred             cCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCC
Q psy3718         260 TDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGP  339 (543)
Q Consensus       260 ~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~  339 (543)
                      ...+++.+.|..|...  ..+..+|.++....+++.   +..+-    .+..+.+++.+|.-++.|..+|.++|..|.++
T Consensus       450 t~nns~t~~wkqp~~~--~~~~dg~~leld~g~~g~---frevy----~g~etmctvdglhfns~y~arvka~n~tg~s~  520 (699)
T KOG4367|consen  450 THNNSATLSWKQPPLS--TVPADGYILELDDGNGGQ---FREVY----VGKETMCTVDGLHFNSTYNARVKAFNKTGVSP  520 (699)
T ss_pred             ccCCceEEEeecCCCC--CCCCcceEEEeecCCCCc---eeEEE----ecCceeEEecceecchhHHHHHHHhhccCCCc
Confidence            3578999999976655  568899999886553332   33332    35778999999999999999999999999999


Q ss_pred             CCcceeeeccC
Q psy3718         340 MSEEVKQYTAE  350 (543)
Q Consensus       340 ~s~~~~~~t~~  350 (543)
                      +|..+..+|..
T Consensus       521 ys~tl~lqts~  531 (699)
T KOG4367|consen  521 YSKTLVLQTSE  531 (699)
T ss_pred             ccceeEeeecc
Confidence            99988887753

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=96.44  E-value=0.006  Score=50.39  Aligned_cols=69  Identities=16%  Similarity=0.244  Sum_probs=45.6

Q ss_pred             ccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCC--ccccccCceEEEecceEEEeecCceeecceecCC-CC-
Q psy3718         460 MYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDK--CKNDRVPARIASFNDNFTATYTEDIKLPCLTVGV-PA-  534 (543)
Q Consensus       460 ~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~--~~~~~v~~~~~~~~~~~~~~~~~~~~l~c~~~g~-p~-  534 (543)
                      .+.+++.. .-.|.+.+              .+..|....  ...+..++.+..++..+....|+.++|.|.+.|. |. 
T Consensus         4 ~i~~v~~~D~G~Y~C~~--------------~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~   69 (139)
T cd05771           4 TLPGLTVHDEGTYICSV--------------STPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLD   69 (139)
T ss_pred             EECCCCHHHCEEEEEEE--------------EccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCC
Confidence            44467776 66777777              655554333  2233345566555555555578999999999995 76 


Q ss_pred             CeeeEEec
Q psy3718         535 PEIIWKTF  542 (543)
Q Consensus       535 p~~~w~~~  542 (543)
                      +.|+|+|-
T Consensus        70 ~~i~W~~~   77 (139)
T cd05771          70 VQVEWTRE   77 (139)
T ss_pred             eEEEEEEC
Confidence            59999983

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.33  E-value=0.025  Score=42.77  Aligned_cols=63  Identities=19%  Similarity=0.306  Sum_probs=39.4

Q ss_pred             CCCeEEEEEee-ccCCceEEEccCCeecCCCCCCceEEeeeecCCCc---eeeEEEEeeecCCCccEEEEEecc
Q psy3718          66 GEPSVLQCEAK-GEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGV---LSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        66 g~~~~l~C~~~-g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      .....+.|.+. |.|.+.|.|+++....       .........++.   .+.|.+......|...|+|.|.+.
T Consensus        15 ~~~~va~C~s~~gkPaa~IsW~~~~~g~-------~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~   81 (95)
T cd07703          15 IPVPVAKCVSANGRPPARISWSSTLGGN-------ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHE   81 (95)
T ss_pred             CccEEEEEEcCCCCCCcEEEEEcCCCCC-------eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCc
Confidence            34568999887 5789999999872111       111111112222   346777665666677899999996

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>KOG1480|consensus

Probab=96.31  E-value=0.00067  Score=68.32  Aligned_cols=100  Identities=17%  Similarity=0.203  Sum_probs=71.5

Q ss_pred             EEEEEecCCCCCCC--ceEEEe-CCCeEEeecceeEeecCCCeEEEEEe-eccCCceEEEccCCeecCCCCCCceEEeee
Q psy3718          30 FDPELLNPSFNGFP--PLLLSS-APPEFEIKLRNQTSRRGEPSVLQCEA-KGEKPIGILWNMNNKRLDPKSDNRYTIREE  105 (543)
Q Consensus        30 Y~C~a~n~~g~~~s--~~l~v~-~~p~~~~~~~~~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~  105 (543)
                      -+|.|....|...+  +.+.+. ..-.|...|....|..+....|.|.. .+.|...++|++++..++++.+. +...  
T Consensus       105 cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~-~~~~--  181 (909)
T KOG1480|consen  105 CQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANV-IRAS--  181 (909)
T ss_pred             eeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccc-hhhh--
Confidence            35578777774322  222221 23445566777888889999888885 67888999999999999873332 2211  


Q ss_pred             ecCCCceeeEEEEeeecCCCccEEEEEecccce
Q psy3718         106 ILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS  138 (543)
Q Consensus       106 ~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s  138 (543)
                            -+.|+|..+..+|.|+|+|+|.|..+.
T Consensus       182 ------d~~li~~~arlsd~~nytc~a~ni~~~  208 (909)
T KOG1480|consen  182 ------DHNLIISQARLSDSGNYTCEATNIVAK  208 (909)
T ss_pred             ------cCCccccchhhhhcccceeeeehhhcc
Confidence                  147999999999999999999998654

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=96.26  E-value=0.0081  Score=45.92  Aligned_cols=31  Identities=13%  Similarity=-0.013  Sum_probs=24.9

Q ss_pred             CceEEEec----CCeEEEEEEec-CCCCC-CCceEEE
Q psy3718          18 RVLLPIGE----SSFHFDPELLN-PSFNG-FPPLLLS   48 (543)
Q Consensus        18 ~g~L~I~~----D~G~Y~C~a~n-~~g~~-~s~~l~v   48 (543)
                      +.+|.|.|    |+|.|+|.+.| +.|.. +...|.|
T Consensus        62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          62 DGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             cceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            47999999    99999999999 66653 4566666

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=96.21  E-value=0.077  Score=41.35  Aligned_cols=81  Identities=16%  Similarity=0.129  Sum_probs=54.9

Q ss_pred             CCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCC--CCCEEE
Q psy3718         249 SGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLK--TYTQYS  326 (543)
Q Consensus       249 ~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~--p~t~Y~  326 (543)
                      ..+|.++++... .....|.|+++..   ......|.|+|+..+.. .|.......   .....++.+++..  +...|.
T Consensus        22 lp~P~nv~~~s~-nf~~iL~W~~~~~---~~~~~~ytVq~~~~~~~-~W~~v~~C~---~i~~~~Cdlt~~~~~~~~~Y~   93 (107)
T PF01108_consen   22 LPAPQNVTVDSV-NFKHILRWDPGPG---SPPNVTYTVQYKKYGSS-SWKDVPGCQ---NITETSCDLTDETSDPSESYY   93 (107)
T ss_dssp             GSSCEEEEEEEE-TTEEEEEEEESTT---SSSTEEEEEEEEESSTS-CEEEECCEE---EESSSEEECTTCCTTTTSEEE
T ss_pred             CCCCCeeEEEEE-CCceEEEeCCCCC---CCCCeEEEEEEEecCCc-ceeecccee---cccccceeCcchhhcCcCCEE
Confidence            347899999877 5568999999554   34568999999944433 332221011   1245788887755  788999


Q ss_pred             EEEEEEeCCCC
Q psy3718         327 VVVQALNKLGP  337 (543)
Q Consensus       327 ~~V~a~n~~G~  337 (543)
                      ++|+|..+...
T Consensus        94 ~rV~A~~~~~~  104 (107)
T PF01108_consen   94 ARVRAEVGNQT  104 (107)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEEEeCCcc
Confidence            99999865443

...

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=96.14  E-value=0.0051  Score=44.19  Aligned_cols=34  Identities=12%  Similarity=0.047  Sum_probs=24.3

Q ss_pred             cEEEe------ecCCCeEEecCceEEEec----CCeEEEEEEec
Q psy3718           3 NFFFY------RGFNPRILLGRVLLPIGE----SSFHFDPELLN   36 (543)
Q Consensus         3 ~~~~~------~~~~~~~~~~~g~L~I~~----D~G~Y~C~a~n   36 (543)
                      +++|+      ..........++.|.|.+    |.|.|+|+|.|
T Consensus        32 ~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   32 SISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            56777      222233335567999997    99999999987

...

>KOG0613|consensus

Probab=96.11  E-value=0.24  Score=54.02  Aligned_cols=171  Identities=13%  Similarity=0.079  Sum_probs=94.4

Q ss_pred             ceeEEEECCCCCCCEEEEEEEEEeCCCCCC---CCcceeeeccCCCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCce
Q psy3718         310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGP---MSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVI  386 (543)
Q Consensus       310 ~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~---~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i  386 (543)
                      ...+++...-.++..|.+++...-..|.+.   .+....+.+....|..-+.++.+.......+++.|.-.....+++ .
T Consensus       289 ~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~-~  367 (1205)
T KOG0613|consen  289 PELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDE-A  367 (1205)
T ss_pred             cccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCch-h
Confidence            445666666678888888888876666543   333334444445555555666666666667777776441100110 1


Q ss_pred             EEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccC
Q psy3718         387 KGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKS  466 (543)
Q Consensus       387 ~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p  466 (543)
                                                               .+|.+.-...... + +  ..-...........+.++-+
T Consensus       368 -----------------------------------------~~~~~~~~~~~~~-~-~--~~~~~~~~ts~~~~~~~~~~  402 (1205)
T KOG0613|consen  368 -----------------------------------------QGYHGEEVSSESL-G-A--LPCPVGTVTSHTYTIKDAGP  402 (1205)
T ss_pred             -----------------------------------------eeecccccccccc-c-c--cccccccccCcchhhhhcCc
Confidence                                                     1222211111110 0 0  00001112333345558999


Q ss_pred             c-eeeEEEEeCCCCCCCCCCccccccccccCCCccccccCce-------EEEecceEEEeec--CceeecceecCCCCCe
Q psy3718         467 Q-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDRVPAR-------IASFNDNFTATYT--EDIKLPCLTVGVPAPE  536 (543)
Q Consensus       467 ~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~v~~~-------~~~~~~~~~~~~~--~~~~l~c~~~g~p~p~  536 (543)
                      + .|..++.|              +|..|.-.......+.-.       ....+..++...+  +.+.+.|...+.|-| 
T Consensus       403 ~e~~~~~~~a--------------~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~-  467 (1205)
T KOG0613|consen  403 GEGYFTRVPA--------------VNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMP-  467 (1205)
T ss_pred             ccccccccce--------------eccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCCCCcccc-
Confidence            9 99999999              999998877443333111       1112223334444  889999999999988 


Q ss_pred             eeEEe
Q psy3718         537 IIWKT  541 (543)
Q Consensus       537 ~~w~~  541 (543)
                      ++|..
T Consensus       468 ~~~~t  472 (1205)
T KOG0613|consen  468 MTTVT  472 (1205)
T ss_pred             ceeEe
Confidence            88764

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=95.99  E-value=0.031  Score=41.88  Aligned_cols=69  Identities=16%  Similarity=0.212  Sum_probs=41.6

Q ss_pred             eecCCCeEEEEEeecc-CC--ceEEEccCCeecCCCCCCceEEeeee-cCCCceeeEEEEeeecCCCc-cEEEEEecc
Q psy3718          63 SRRGEPSVLQCEAKGE-KP--IGILWNMNNKRLDPKSDNRYTIREEI-LPNGVLSDLSIKRTERGDSA-LFTCEIKSQ  135 (543)
Q Consensus        63 v~~g~~~~l~C~~~g~-p~--~~i~W~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G-~Y~C~a~n~  135 (543)
                      ..+|.++++.|.+.+. |.  .+|.|++....+....   +.-.... ........+++.. +.+|.| .|+|.|.=.
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~---f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~   85 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKS---FLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH   85 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccc---cccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence            3789999999999864 54  7899998666553211   1100000 0011113455555 467777 999999875

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=95.87  E-value=0.011  Score=45.41  Aligned_cols=31  Identities=13%  Similarity=0.044  Sum_probs=24.1

Q ss_pred             CceEEEec----CCeEEEEEEec-CCCCC-CCceEEE
Q psy3718          18 RVLLPIGE----SSFHFDPELLN-PSFNG-FPPLLLS   48 (543)
Q Consensus        18 ~g~L~I~~----D~G~Y~C~a~n-~~g~~-~s~~l~v   48 (543)
                      +++|+|.|    |+|.|.|.+.+ +.|.. +...|+|
T Consensus        63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          63 DGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             ceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            56999999    99999999998 55654 4456665

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=95.82  E-value=0.018  Score=43.65  Aligned_cols=31  Identities=6%  Similarity=-0.148  Sum_probs=24.6

Q ss_pred             CceEEEec----CCeEEEEEE-ecCCCCC-CCceEEE
Q psy3718          18 RVLLPIGE----SSFHFDPEL-LNPSFNG-FPPLLLS   48 (543)
Q Consensus        18 ~g~L~I~~----D~G~Y~C~a-~n~~g~~-~s~~l~v   48 (543)
                      +.+|.|.|    |+|.|+|.. ..+.|.. ++..|+|
T Consensus        59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          59 DATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             ccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence            67999999    999999975 6666764 5667766

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=95.81  E-value=0.0089  Score=44.30  Aligned_cols=28  Identities=25%  Similarity=0.561  Sum_probs=25.6

Q ss_pred             eEEEeecCceeecceecCCCCCeeeEEe
Q psy3718         514 NFTATYTEDIKLPCLTVGVPAPEIIWKT  541 (543)
Q Consensus       514 ~~~~~~~~~~~l~c~~~g~p~p~~~w~~  541 (543)
                      .+.+..|+.+.|.|.+.|.|.|.+.|+|
T Consensus         3 ~~~~~~G~~~~l~C~~~~~p~~~v~W~k   30 (85)
T cd05729           3 LHAVPAGSTVRLKCPASGNPRPTITWLK   30 (85)
T ss_pred             eeEecCCCcEEEEEEcCCCCCCeEEEEE
Confidence            3667789999999999999999999987

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>smart00409 IG Immunoglobulin

Probab=95.80  E-value=0.024  Score=41.66  Aligned_cols=30  Identities=20%  Similarity=0.049  Sum_probs=23.0

Q ss_pred             ceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      .+|.|.+    |+|.|.|.+.+..+.. ....|.|
T Consensus        51 ~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V   85 (86)
T smart00409       51 STLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV   85 (86)
T ss_pred             eEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence            5899998    9999999999877764 2344444

>smart00410 IG_like Immunoglobulin like

Probab=95.80  E-value=0.024  Score=41.66  Aligned_cols=30  Identities=20%  Similarity=0.049  Sum_probs=23.0

Q ss_pred             ceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      .+|.|.+    |+|.|.|.+.+..+.. ....|.|
T Consensus        51 ~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V   85 (86)
T smart00410       51 STLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV   85 (86)
T ss_pred             eEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence            5899998    9999999999877764 2344444

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]

Probab=95.75  E-value=0.49  Score=43.82  Aligned_cols=118  Identities=16%  Similarity=0.098  Sum_probs=68.7

Q ss_pred             cCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCC
Q psy3718         260 TDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGP  339 (543)
Q Consensus       260 ~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~  339 (543)
                      ..+..+.+-|.+..+    -....|.|+....+..........     ++-...+.-.+|.++..|...|.+.+..+.-+
T Consensus        81 ~~~~~~~~~w~~~~d----~~~~~Y~i~~~~gD~~f~r~~~~~-----n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~s  151 (343)
T COG3401          81 ERPKSVKVFWSPHPD----VSVGKYIIQRQNGDGKFLRTGLVK-----NRLFVEFIDSDLGHNEKYMELIIAADFQMGKS  151 (343)
T ss_pred             cCcceeeecccccCC----CCCCeEEEEEecCchhhhhhhHHH-----hccchhheecccccccceeeeEEeecccccce
Confidence            345679999999874    356788887544332211110111     22234455678999999999999987765332


Q ss_pred             CCcceeeeccCCCCCCCCC---CcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeC
Q psy3718         340 MSEEVKQYTAEGTPEQPPQ---DNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPS  396 (543)
Q Consensus       340 ~s~~~~~~t~~~~p~~~P~---~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~  396 (543)
                      .+    +.-.+..|...|.   ++++.....+.+.|+|+.++.+      ..|+|+-...
T Consensus       152 fs----f~gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~~------~yy~IY~~~~  201 (343)
T COG3401         152 FS----FTGVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEAE------DYYRIYASDS  201 (343)
T ss_pred             ee----eeeeecccccCCceeeeeeeecCCCCcceeeccCcccc------ceEEEeccCC
Confidence            22    2222233333333   3344445577899999987533      1677775543

>KOG0613|consensus

Probab=95.74  E-value=0.47  Score=51.87  Aligned_cols=215  Identities=18%  Similarity=0.143  Sum_probs=111.5

Q ss_pred             CeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceeeeeeeecc
Q psy3718          68 PSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEAS  147 (543)
Q Consensus        68 ~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~~~~~~v~  147 (543)
                      .+.+.|.+ |.|.+...|+++|..+.+....+......      .+.+.|..+-..+.|.|.-.+-|..+....      
T Consensus       207 ~v~~v~s~-gqp~~~~~~~~~g~~i~~~~~~~~s~t~e------~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~------  273 (1205)
T KOG0613|consen  207 RVRAVVSA-GQPEPLERWEILGELIAPGSAPSMSVTLE------ASDRKIQLTLRAPRGPYSAHILGYLIEQRK------  273 (1205)
T ss_pred             eEEEEEec-CCCccchhhhhcccccCCCCccccccccc------hhheeeeEEeecCCCchHHHHhcchhhhcc------
Confidence            34555554 67889999999999998766554443321      135666666667777776544443222100      


Q ss_pred             cccccceEEEEEEEecccCCCCCCCcEEeeecCCCCcceeEeccCcccccccceeccccccccCCCCccceEEEEEEEEE
Q psy3718         148 GLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAE  227 (543)
Q Consensus       148 ~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~pi~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~p~p~~~w~~y~~~v~a~  227 (543)
                       -.....|                      +       +....+.....|....       ..++     ..+.+++...
T Consensus       274 -~~~~~t~----------------------~-------i~~~~~~~~~s~t~~~-------~~~~-----~q~~~~v~~~  311 (1205)
T KOG0613|consen  274 -HKGGNTK----------------------T-------IQNDGPEPELSWTVAD-------KRQG-----CQDRFKVTEE  311 (1205)
T ss_pred             -cCCCccc----------------------c-------ccccCCccccceeeec-------ccCC-----cccceeeeEE
Confidence             0000000                      0       1111111111221111       1223     4555555555


Q ss_pred             cCCCCCCCCccEE---EeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEee
Q psy3718         228 NEIGSSEPSDTVT---ILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDF  304 (543)
Q Consensus       228 n~~G~~~~s~~~~---~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~  304 (543)
                      -..|.+.+.....   ....+..+.+.+.++.+.......+.+.|....... .....+|...-....+.. +   .+.+
T Consensus       312 ~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~-p~~~~~~~~~~~~~~~~~-~---~~~~  386 (1205)
T KOG0613|consen  312 APIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQK-PDEAQGYHGEEVSSESLG-A---LPCP  386 (1205)
T ss_pred             eeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcC-Cchheeeccccccccccc-c---cccc
Confidence            5555544433221   222234455556666666677788888888765432 122333333222111111 1   1111


Q ss_pred             eccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCCCCcc
Q psy3718         305 SKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEE  343 (543)
Q Consensus       305 ~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~  343 (543)
                       ......+.+.+.++.++..|..++.|.|..|.....+.
T Consensus       387 -~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~  424 (1205)
T KOG0613|consen  387 -VGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAE  424 (1205)
T ss_pred             -cccccCcchhhhhcCcccccccccceeccCCcccccch
Confidence             11345678889999999999999999999986654433

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=95.67  E-value=0.016  Score=43.80  Aligned_cols=28  Identities=11%  Similarity=-0.059  Sum_probs=23.0

Q ss_pred             ecCceEEEec----CCeEEEEEEecCCCCCCC
Q psy3718          16 LGRVLLPIGE----SSFHFDPELLNPSFNGFP   43 (543)
Q Consensus        16 ~~~g~L~I~~----D~G~Y~C~a~n~~g~~~s   43 (543)
                      ..+++|.|.+    |+|.|+|.+....|....
T Consensus        54 ~~~~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~   85 (92)
T cd05741          54 YPNGSLLIQNLTKEDSGTYTLQIISTNGVTEN   85 (92)
T ss_pred             cCCceEEEccCCchhcEEEEEEEEcCCCcEEE
Confidence            4678999999    999999999987755433

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=95.61  E-value=0.014  Score=44.14  Aligned_cols=21  Identities=19%  Similarity=0.007  Sum_probs=18.8

Q ss_pred             eEEEec----CCeEEEEEEecCCCC
Q psy3718          20 LLPIGE----SSFHFDPELLNPSFN   40 (543)
Q Consensus        20 ~L~I~~----D~G~Y~C~a~n~~g~   40 (543)
                      +|+|.+    |+|.|.|.+.|..++
T Consensus        66 ~L~I~~l~~sDsgtY~C~v~~~~~~   90 (94)
T cd07690          66 PLIIKNLKIEDSDTYICEVEDKKEE   90 (94)
T ss_pred             EEEECCCCHHHCEEEEEEECCccce
Confidence            699999    999999999997654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>TIGR00864 PCC polycystin cation channel protein

Probab=95.57  E-value=8  Score=46.88  Aligned_cols=62  Identities=15%  Similarity=0.046  Sum_probs=39.5

Q ss_pred             CCeEEEE--EEecCCCCC-CCceEEEeCCCe---EEee-----------cceeEeecCCCeEEEEEeeccCCceEEEcc
Q psy3718          26 SSFHFDP--ELLNPSFNG-FPPLLLSSAPPE---FEIK-----------LRNQTSRRGEPSVLQCEAKGEKPIGILWNM   87 (543)
Q Consensus        26 D~G~Y~C--~a~n~~g~~-~s~~l~v~~~p~---~~~~-----------~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~   87 (543)
                      ..|.|+-  .|.|..|.. .+..+.|+.+-.   |...           +....+..|..+.|.-.+......++.|..
T Consensus      1566 spGtYtVtLTvtN~~Gs~~~T~~i~V~~~I~GlqI~~~~~~gg~~~~~~~~~~~~~t~~~v~l~~~~~~GTnvsysW~~ 1644 (2740)
T TIGR00864      1566 SVGTFNIIVTAENDVGAAQASIFLFVLQEIEGLQILGETAEGGGGGVQELDGCYFETNHTVQFHAGFKDGTNLSFSWNA 1644 (2740)
T ss_pred             CCceEEEEEEEecCCCccceeEEEEEeecccceEEEeecccccCCcccccccceeccCCEEEeeeccCCCCeeEEEEEE
Confidence            7899987  788988886 556777766532   2211           112455666667776555544567888864

Note: this model has been restricted to the amino half because for technical reasons.

>PHA03269 envelope glycoprotein C; Provisional

Probab=95.56  E-value=0.23  Score=48.03  Aligned_cols=72  Identities=15%  Similarity=0.208  Sum_probs=52.9

Q ss_pred             eEEEec----CCeEEEEEEecCC-CCC-CCc--eEEEeCCCeEEeecceeEeecCCCeEEEEEeecc-CC--ceEEEccC
Q psy3718          20 LLPIGE----SSFHFDPELLNPS-FNG-FPP--LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGE-KP--IGILWNMN   88 (543)
Q Consensus        20 ~L~I~~----D~G~Y~C~a~n~~-g~~-~s~--~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~--~~i~W~~~   88 (543)
                      .|.|.+    ++|.|+-+..+.. +.. .+.  .|.+..+|.+.+.  ..-+..|++..-.|.+..+ |+  ..+.|++|
T Consensus       290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~--p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~n  367 (566)
T PHA03269        290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVI--GDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSN  367 (566)
T ss_pred             ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCcccc--CCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            699998    8999998876432 332 334  4555677765553  3456889999999999774 43  68999999


Q ss_pred             CeecC
Q psy3718          89 NKRLD   93 (543)
Q Consensus        89 ~~~i~   93 (543)
                      +.++.
T Consensus       368 g~~V~  372 (566)
T PHA03269        368 FGNIG  372 (566)
T ss_pred             CcccC
Confidence            99985

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=95.49  E-value=0.037  Score=43.39  Aligned_cols=32  Identities=16%  Similarity=0.027  Sum_probs=22.7

Q ss_pred             CceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718          18 RVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS   49 (543)
Q Consensus        18 ~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~   49 (543)
                      +.+|+|.+    |+|.|.|.+.+...-. ....|.|.
T Consensus        73 ~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          73 DATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             CcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            45999999    9999999999653332 23455553

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=95.45  E-value=0.03  Score=38.73  Aligned_cols=14  Identities=21%  Similarity=0.204  Sum_probs=13.3

Q ss_pred             EEEec----CCeEEEEEE
Q psy3718          21 LPIGE----SSFHFDPEL   34 (543)
Q Consensus        21 L~I~~----D~G~Y~C~a   34 (543)
                      |.|.+    |+|.|+|.|
T Consensus        47 L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen   47 LTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             EEESSCTGGGTEEEEEEE
T ss_pred             EEEccCCHHHCEEEEEEC
Confidence            99999    999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>PHA03271 envelope glycoprotein C; Provisional

Probab=95.44  E-value=0.27  Score=46.57  Aligned_cols=75  Identities=13%  Similarity=0.197  Sum_probs=53.3

Q ss_pred             eEEEec----CCeEEEEEEecCCCCC-CC--ceEEE-eCCCeEEeecceeEeecCCCeEEEEEeecc-CC--ceEEEccC
Q psy3718          20 LLPIGE----SSFHFDPELLNPSFNG-FP--PLLLS-SAPPEFEIKLRNQTSRRGEPSVLQCEAKGE-KP--IGILWNMN   88 (543)
Q Consensus        20 ~L~I~~----D~G~Y~C~a~n~~g~~-~s--~~l~v-~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~--~~i~W~~~   88 (543)
                      +|.|.+    |+|.|+-...+..-.. ..  ..+.| +.||.+.+.+  .-+..|++..-.|.+... |+  ..+.|++|
T Consensus       208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~n  285 (490)
T PHA03271        208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLA--PPVLSGENYKASCIVRHFYPPGSVYVSWRQN  285 (490)
T ss_pred             eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            889999    8998877666655443 22  23344 6677666543  335789999999999874 43  68999999


Q ss_pred             CeecCCCC
Q psy3718          89 NKRLDPKS   96 (543)
Q Consensus        89 ~~~i~~~~   96 (543)
                      |.++....
T Consensus       286 G~~V~~~~  293 (490)
T PHA03271        286 GNIATPRK  293 (490)
T ss_pred             CccccCcc
Confidence            99886443

>PHA02633 hypothetical protein; Provisional

Probab=95.26  E-value=0.017  Score=38.60  Aligned_cols=23  Identities=22%  Similarity=0.531  Sum_probs=21.3

Q ss_pred             eeEEEEeeecCCCccEEEEEecc
Q psy3718         113 SDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus       113 ~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      ..|.|.++..+|+|+|.|..+|.
T Consensus        18 ~nLwilpa~~sDSGiYiC~~rn~   40 (63)
T PHA02633         18 NNMLILNPTQSDSGIYMCITKNE   40 (63)
T ss_pred             ccEEEeccccccCcEEEEEEcCC
Confidence            47999999999999999999985

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=95.24  E-value=0.02  Score=44.66  Aligned_cols=33  Identities=15%  Similarity=0.016  Sum_probs=25.2

Q ss_pred             CceEEEec----CCeEEEEEEecCCCCC-CCceEEEeC
Q psy3718          18 RVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSA   50 (543)
Q Consensus        18 ~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~   50 (543)
                      +.+|+|.+    |+|.|.|.+.+..+.. ....|.|++
T Consensus        67 ~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          67 DASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             cceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEEE
Confidence            45999999    9999999999875543 445676653

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=95.16  E-value=0.14  Score=38.60  Aligned_cols=67  Identities=16%  Similarity=0.300  Sum_probs=44.8

Q ss_pred             eeEeecCCCeEE-EEEee-ccCCceEEEccCCeecC-----CCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEE
Q psy3718          60 NQTSRRGEPSVL-QCEAK-GEKPIGILWNMNNKRLD-----PKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEI  132 (543)
Q Consensus        60 ~~~v~~g~~~~l-~C~~~-g~p~~~i~W~~~~~~i~-----~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a  132 (543)
                      ...+..|+.+.+ .|.+. |.|.+.|.|+.+..-..     ...+..+++         .+.|.+......|.-.++|.+
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV---------~S~~~l~p~r~d~G~~vtC~V   80 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTV---------TSEYIWVPSRHANGHPLTCVV   80 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEE---------EEEEEEEeCHHHCCcEEEEEE
Confidence            356788999999 99976 56889999997632211     011122222         245666666666788999999


Q ss_pred             ecc
Q psy3718         133 KSQ  135 (543)
Q Consensus       133 ~n~  135 (543)
                      ...
T Consensus        81 ~H~   83 (97)
T cd07704          81 SHP   83 (97)
T ss_pred             eCc
Confidence            885

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=95.15  E-value=0.031  Score=43.55  Aligned_cols=31  Identities=13%  Similarity=0.008  Sum_probs=24.1

Q ss_pred             ceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS   49 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~   49 (543)
                      .+|.|.+    |+|.|.|.+.+..+.. ....|.|.
T Consensus        68 ~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          68 ASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             EEEEEccCChHHCEEEEEEEEecccceEEEEEEEEE
Confidence            3899999    9999999999876654 34566664

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=95.06  E-value=0.021  Score=43.96  Aligned_cols=22  Identities=18%  Similarity=0.110  Sum_probs=19.3

Q ss_pred             ceEEEec----CCeEEEEEEecCCCC
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSFN   40 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g~   40 (543)
                      .+|.|.+    |+|.|.|.+.|..+.
T Consensus        65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~   90 (100)
T cd05713          65 VALRIHNVRASDEGLYTCFFQSDGFY   90 (100)
T ss_pred             EEEEEEcCChhhCEEEEEEEecCCcE
Confidence            4899999    999999999987654

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=95.00  E-value=0.028  Score=44.44  Aligned_cols=25  Identities=16%  Similarity=0.017  Sum_probs=21.5

Q ss_pred             cCceEEEec----CCeEEEEEEecCCCCC
Q psy3718          17 GRVLLPIGE----SSFHFDPELLNPSFNG   41 (543)
Q Consensus        17 ~~g~L~I~~----D~G~Y~C~a~n~~g~~   41 (543)
                      .+.+|.|.|    |+|.|+|.+.|.-+..
T Consensus        78 ~daSI~I~nv~~sD~G~Y~C~v~n~p~~~  106 (116)
T cd05879          78 KDGSIVIHNLDYTDNGTFTCDVKNPPDIV  106 (116)
T ss_pred             CeeEEEEccCCcccCEEEEEEEEcCCCcC
Confidence            456999999    9999999999987753

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=94.91  E-value=0.038  Score=42.20  Aligned_cols=27  Identities=11%  Similarity=0.041  Sum_probs=22.6

Q ss_pred             CceEEEec----CCeEEEEEEecCCCCCCCc
Q psy3718          18 RVLLPIGE----SSFHFDPELLNPSFNGFPP   44 (543)
Q Consensus        18 ~g~L~I~~----D~G~Y~C~a~n~~g~~~s~   44 (543)
                      +++|+|.+    |+|.|.|.+.+..|...+.
T Consensus        60 ~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~   90 (97)
T cd05775          60 DYSLQISNLKMEDAGSYRAEINTKNGVTITK   90 (97)
T ss_pred             ceeEEECCCchHHCEEEEEEEEcCCCCeEEE
Confidence            37999999    9999999999987765443

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=94.81  E-value=0.082  Score=38.37  Aligned_cols=40  Identities=10%  Similarity=0.101  Sum_probs=27.4

Q ss_pred             ccEEEeecCC-----------CeEEecCceEEEec----CCeEEEEEEecCCCCC
Q psy3718           2 ENFFFYRGFN-----------PRILLGRVLLPIGE----SSFHFDPELLNPSFNG   41 (543)
Q Consensus         2 ~~~~~~~~~~-----------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~   41 (543)
                      ..+.||++..           ++.....++|.|.-    |.+.|+|.|.|..+..
T Consensus        15 a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885          15 ATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             CeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            4578887543           12222334677766    8899999999998875

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=94.78  E-value=0.059  Score=37.05  Aligned_cols=50  Identities=16%  Similarity=0.348  Sum_probs=35.4

Q ss_pred             cCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEec
Q psy3718          65 RGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKS  134 (543)
Q Consensus        65 ~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  134 (543)
                      ..+.+.|.|.+.    -+|.|++ |..+....+               .+|.+-++..+-.|.|.|.+++
T Consensus         5 ~~~~V~L~C~~~----tsi~W~k-G~~~~~~~~---------------~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           5 SEGKVFLKCNGA----TNITWKK-GKEILEVSN---------------TLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             cCceEEEEecCC----CcEEEec-Ccccccccc---------------cEEeccCcccCCCcceEecCcc
Confidence            346789999762    4699999 665532221               2466677777778999999987

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=94.70  E-value=0.075  Score=41.64  Aligned_cols=31  Identities=16%  Similarity=0.005  Sum_probs=23.7

Q ss_pred             ceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS   49 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~   49 (543)
                      .+|+|.+    |+|.|.|.+....+.. ....|.|.
T Consensus        72 asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          72 ASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             EEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            4899999    9999999999865443 44566664

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>PHA03270 envelope glycoprotein C; Provisional

Probab=94.59  E-value=0.47  Score=45.35  Aligned_cols=73  Identities=15%  Similarity=0.094  Sum_probs=55.1

Q ss_pred             eEEEec----CCeEEEEEEecCCCCC-CC--ceEEEeCCCeEEeecceeEeecCCCeEEEEEeecc-CC--ceEEEccCC
Q psy3718          20 LLPIGE----SSFHFDPELLNPSFNG-FP--PLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGE-KP--IGILWNMNN   89 (543)
Q Consensus        20 ~L~I~~----D~G~Y~C~a~n~~g~~-~s--~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~--~~i~W~~~~   89 (543)
                      .|.|..    .+|.|+-...+..+.. ..  ..|....+|.+.+.+  .-+..|++..-.|.+..+ |+  ..+.|++|+
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng  260 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP--HAVLEGEPFGATCVAANYYPGDRAAFRWFEGG  260 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            488988    7899999988876643 33  344456788766543  345789999999999774 43  689999999


Q ss_pred             eecCC
Q psy3718          90 KRLDP   94 (543)
Q Consensus        90 ~~i~~   94 (543)
                      .++..
T Consensus       261 ~~V~~  265 (466)
T PHA03270        261 DEVFA  265 (466)
T ss_pred             ccccC
Confidence            99853

>KOG4597|consensus

Probab=94.52  E-value=0.032  Score=53.39  Aligned_cols=80  Identities=11%  Similarity=0.045  Sum_probs=57.0

Q ss_pred             EeecceeEeecCCCeEEEEEeeccCCceEEEcc---CCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEE
Q psy3718          55 EIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNM---NNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCE  131 (543)
Q Consensus        55 ~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~  131 (543)
                      ...|.-..+-++++..+.|.+.|.+.+.|+|.+   |++.+....+. . +.  ...-..+..|.|.+....|+|.|+|.
T Consensus       200 ~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq-~-~e--~p~vtstcql~ic~ewq~~a~w~tCs  275 (560)
T KOG4597|consen  200 VDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQ-T-VE--NPVVTSTCQLVICNEWQADAGWYTCS  275 (560)
T ss_pred             ccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCcc-c-cC--CcceeeeeeEEEcchhhcCCCceeec
Confidence            334556778899999999999999999999975   33332221111 1 10  01123457899999999999999999


Q ss_pred             Eecccce
Q psy3718         132 IKSQKIS  138 (543)
Q Consensus       132 a~n~~~s  138 (543)
                      |.+.+|-
T Consensus       276 ~rcg~g~  282 (560)
T KOG4597|consen  276 ARCGAGF  282 (560)
T ss_pred             cccccce
Confidence            9998665

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=94.50  E-value=0.045  Score=41.88  Aligned_cols=31  Identities=16%  Similarity=0.084  Sum_probs=22.6

Q ss_pred             CceEEEec----CCeEEEEEEec-CCCCC-CCceEEE
Q psy3718          18 RVLLPIGE----SSFHFDPELLN-PSFNG-FPPLLLS   48 (543)
Q Consensus        18 ~g~L~I~~----D~G~Y~C~a~n-~~g~~-~s~~l~v   48 (543)
                      +.+|+|.+    |+|.|.|.+.+ ..|.. ....|.|
T Consensus        61 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          61 DATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             ceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence            46999999    99999999875 44554 3345554

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>PHA03273 envelope glycoprotein C; Provisional

Probab=94.36  E-value=0.64  Score=44.95  Aligned_cols=72  Identities=17%  Similarity=0.175  Sum_probs=55.7

Q ss_pred             eEEEec----CCeEEEEEEecCCCCC-CCceEEE--eCCCeEEeecceeEeecCCCeEEEEEeecc-CC--ceEEEccCC
Q psy3718          20 LLPIGE----SSFHFDPELLNPSFNG-FPPLLLS--SAPPEFEIKLRNQTSRRGEPSVLQCEAKGE-KP--IGILWNMNN   89 (543)
Q Consensus        20 ~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v--~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~--~~i~W~~~~   89 (543)
                      .|.|..    ++|.|+-...+..|.. ....++|  ..+|.+.+.+  .-+..|++..-.|.+... |+  ..+.|++||
T Consensus       199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg  276 (486)
T PHA03273        199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV--HPSLKGENYRAVCVVASYFPHSSVKLRWYKNA  276 (486)
T ss_pred             ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            399998    8999999887766653 4455555  6788766543  446789999999999774 43  689999999


Q ss_pred             eecC
Q psy3718          90 KRLD   93 (543)
Q Consensus        90 ~~i~   93 (543)
                      .++.
T Consensus       277 ~~V~  280 (486)
T PHA03273        277 KEVD  280 (486)
T ss_pred             eecc
Confidence            9986

>KOG4367|consensus

Probab=94.28  E-value=0.031  Score=52.49  Aligned_cols=75  Identities=15%  Similarity=0.085  Sum_probs=55.9

Q ss_pred             cceEEEEeeCCCCCCCCcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCc
Q psy3718         408 CTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDE  486 (543)
Q Consensus       408 ~~~~~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~  486 (543)
                      +++++|+|..|  .....+.+||.++....++  +...++-    ..+.+-.++.||.-+ .|.-+|.|           
T Consensus       452 nns~t~~wkqp--~~~~~~~dg~~leld~g~~--g~frevy----~g~etmctvdglhfns~y~arvka-----------  512 (699)
T KOG4367|consen  452 NNSATLSWKQP--PLSTVPADGYILELDDGNG--GQFREVY----VGKETMCTVDGLHFNSTYNARVKA-----------  512 (699)
T ss_pred             CCceEEEeecC--CCCCCCCcceEEEeecCCC--CceeEEE----ecCceeEEecceecchhHHHHHHH-----------
Confidence            47899999977  5566788999999877654  3343332    123333455599999 99999999           


Q ss_pred             cccccccccCCCcccccc
Q psy3718         487 TLYSRHRGESDKCKNDRV  504 (543)
Q Consensus       487 ~~~~~~~G~g~~~~~~~v  504 (543)
                         .|..|+++.|++.-.
T Consensus       513 ---~n~tg~s~ys~tl~l  527 (699)
T KOG4367|consen  513 ---FNKTGVSPYSKTLVL  527 (699)
T ss_pred             ---hhccCCCcccceeEe
Confidence               999999999776544

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=94.11  E-value=0.076  Score=47.16  Aligned_cols=47  Identities=23%  Similarity=0.376  Sum_probs=35.8

Q ss_pred             CceEEEccC-CeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718          80 PIGILWNMN-NKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        80 ~~~i~W~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      .|...|..+ |+.+.  .+.++.+..    .   +.|.+.+...+++|.|+|..+-.
T Consensus        12 DP~y~W~GP~g~~l~--gn~~~nIT~----T---G~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   12 DPTYLWTGPNGKPLS--GNSYVNITE----T---GKLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             CCceEEECCCCcccC--CCCeEEEcc----C---ceEEeeccccccCCceEEEEEEE
Confidence            488999975 44543  555666653    3   47999999999999999998875

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors

Probab=94.06  E-value=0.68  Score=35.58  Aligned_cols=84  Identities=21%  Similarity=0.391  Sum_probs=56.1

Q ss_pred             CCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCce---eEEEEC--CCCCC
Q psy3718         248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKE---HHLTLS--SLKTY  322 (543)
Q Consensus       248 p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~--~L~p~  322 (543)
                      |++.|.++.+.......+...|++....  + ....|++.|...+ . .+..... ......+.   +.+.+.  +..-+
T Consensus         7 ~p~~P~~~~C~S~~~etftC~W~~g~~~--~-l~~~y~L~Y~~~~-~-~~~eCp~-~~~~~~ns~~~~~C~F~~~~t~lf   80 (104)
T PF09067_consen    7 PPEKPENLKCFSREMETFTCFWEPGSEG--N-LPTNYTLFYKKEG-E-EWKECPD-YSTSGPNSTVRHICYFPKSDTSLF   80 (104)
T ss_dssp             HCCCCEEEEEEBSSSS-EEEEEEEESSS--T-STCEEEEEEEETT-S-EEEEESE-SSTTETTEEEEEEEEE-CCGCSSS
T ss_pred             CCCCCccCccCCCCCCcEEEEeeCCCCC--C-CCCcEEEEEEeCC-C-CCccCCC-eEecCCCCceeEEEEcCCCCeEEE
Confidence            5678999999999999999999998764  2 2344999998876 2 2222211 11111122   225554  78999


Q ss_pred             CEEEEEEEEEeCCCC
Q psy3718         323 TQYSVVVQALNKLGP  337 (543)
Q Consensus       323 t~Y~~~V~a~n~~G~  337 (543)
                      +.|.++|.|.|..|.
T Consensus        81 ~~y~i~V~a~~~~~~   95 (104)
T PF09067_consen   81 VPYCIQVEATNALGS   95 (104)
T ss_dssp             SEEEEEEEEEETTEE
T ss_pred             EEEEEEEEeccCCCc
Confidence            999999999998763

The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=93.98  E-value=0.084  Score=38.30  Aligned_cols=27  Identities=22%  Similarity=0.605  Sum_probs=25.1

Q ss_pred             EEEeecCceeecceecCCCCCeeeEEe
Q psy3718         515 FTATYTEDIKLPCLTVGVPAPEIIWKT  541 (543)
Q Consensus       515 ~~~~~~~~~~l~c~~~g~p~p~~~w~~  541 (543)
                      ..+..|+.+.|.|.+.|.|.+++.|+|
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~   35 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYK   35 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeee
Confidence            557899999999999999999999997

...

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=93.94  E-value=0.1  Score=39.55  Aligned_cols=31  Identities=6%  Similarity=0.028  Sum_probs=22.9

Q ss_pred             CceEEEec----CCeEEEEEEecCCCCCCCceEEE
Q psy3718          18 RVLLPIGE----SSFHFDPELLNPSFNGFPPLLLS   48 (543)
Q Consensus        18 ~g~L~I~~----D~G~Y~C~a~n~~g~~~s~~l~v   48 (543)
                      +.+|.|.|    |+|.|+|...+.-.-...+.+.|
T Consensus        59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~   93 (96)
T cd05889          59 DMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV   93 (96)
T ss_pred             ccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence            57999999    99999998877543334455554

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>KOG4228|consensus

Probab=93.80  E-value=0.36  Score=51.97  Aligned_cols=223  Identities=16%  Similarity=0.134  Sum_probs=132.9

Q ss_pred             EEEEEEcCCCCCCCCccEEEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEE
Q psy3718         222 IRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFET  301 (543)
Q Consensus       222 ~~v~a~n~~G~~~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~  301 (543)
                      |.|.+....|.+.....+.+.   ..|+ .|....+......+....|.....     ....|.+.++.....  .....
T Consensus         2 Y~~~~~~~~~~~~~~~~v~v~---~~p~-~~~~~~vt~~~~~~~~~~~~~~~t-----~~~~y~v~~~~~~s~--~~~~~   70 (1087)
T KOG4228|consen    2 YTCLARSGLGPGELITYVRVN---GGPP-GPSTPNVTGSTATSWVQAELLGST-----WPNYYQVIFKALSSG--YGYID   70 (1087)
T ss_pred             eeeeecccCCCccceEEEEec---CCCC-CCCCcccccccccceeehhhccCC-----ChhhhheeeeEeccC--cceee
Confidence            567777777766544444443   2233 222455666677888888888753     456777877766554  22222


Q ss_pred             EeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCCCCcceeeeccCCCCCCCCCCcEEEEeccCeEEEEccCCCC--
Q psy3718         302 VDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPL--  379 (543)
Q Consensus       302 ~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~p~~--  379 (543)
                      .      .....+....+.+...|.+  .++|..|.+..+.+..-++.+..+...+....+.......+.+.|.++..  
T Consensus        71 ~------~~~~~~s~~~~~~~~~~~~--~evnt~~~a~~~~~~~~rt~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  142 (1087)
T KOG4228|consen   71 V------DLTTRLSYPCLSPPSFLEL--VEVNTIGRAPFQCPVAPRTGEQATLSLQRDVQALMLSAATAHVNWRRFSATV  142 (1087)
T ss_pred             c------cceeecccCCCCCcchhhh--hhcccccccccccccCCccccccccccccchhhhhhhhhhhccCcccccccc
Confidence            2      1334466778888888888  88888888888888777777666655666555555566667777765411  


Q ss_pred             ------CCCCCceEEEEEEEEeCCccc-CCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEeeCCCCCCCCCccceeee
Q psy3718         380 ------ITANGVIKGYKVVYGPSDTWY-GDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCT  452 (543)
Q Consensus       380 ------~~~~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~  452 (543)
                            ....++. .+.+......+.. .........+++++|.++  .  ...+..|++.+...+.. ....      .
T Consensus       143 ~~~~~~~~~~~~~-~t~i~i~~~~~~p~~~~~~~~~~~it~~w~~~--~--~~~~~~ykl~~~~~d~~-~~~~------v  210 (1087)
T KOG4228|consen  143 GPLAIASPGLGPP-STYIQITTNANSPIQPGEEEEYTTITGSWSPP--H--AVSLDTYKLLHLDPDTG-YEIS------V  210 (1087)
T ss_pred             cccccCCcccCCC-CceEEEeccCCCCCCCCcceEEEEEEecCCCC--C--cccchhhhhhhcCCccc-ceee------e
Confidence                  1123333 3333333322111 111222278999999876  3  55778899888777543 1111      1


Q ss_pred             eCCCCccccc-cccCc-eeeEEEEe
Q psy3718         453 WDPRGRNMYE-ELKSQ-GRGYLVPR  475 (543)
Q Consensus       453 ~~~~~~~~~~-~L~p~-~Y~~~v~A  475 (543)
                      ...+...-.+ ++.|- .|.+++.+
T Consensus       211 ~~~~~~~~~t~~~~~~~~~~~~~ae  235 (1087)
T KOG4228|consen  211 TLTPPGSGGTGDLGPPSISRFKCAE  235 (1087)
T ss_pred             eccCCCCCcccCCCCcccccccccC
Confidence            1233333333 88888 99999999

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=93.67  E-value=0.083  Score=41.82  Aligned_cols=24  Identities=13%  Similarity=0.042  Sum_probs=20.5

Q ss_pred             CceEEEec----CCeEEEEEEecCCCCC
Q psy3718          18 RVLLPIGE----SSFHFDPELLNPSFNG   41 (543)
Q Consensus        18 ~g~L~I~~----D~G~Y~C~a~n~~g~~   41 (543)
                      +.+|.|.+    |+|.|.|.+.|..+..
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~  105 (115)
T cd05880          78 DASILIWQLQPTDNGTYTCQVKNPPDVH  105 (115)
T ss_pred             ceEEEEeeCChhhCEEEEEEEEeCCCCC
Confidence            34799999    9999999999987753

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>PHA02982 hypothetical protein; Provisional

Probab=93.64  E-value=0.12  Score=43.94  Aligned_cols=79  Identities=19%  Similarity=0.307  Sum_probs=52.6

Q ss_pred             eeEeecCCCeEEEEEeec-cCCceEEEccCCe-ecCCCCCCceEEe------------eeecCCCceeeEEEEeeecCCC
Q psy3718          60 NQTSRRGEPSVLQCEAKG-EKPIGILWNMNNK-RLDPKSDNRYTIR------------EEILPNGVLSDLSIKRTERGDS  125 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g-~p~~~i~W~~~~~-~i~~~~~~~~~~~------------~~~~~~~~~~~L~i~~~~~~D~  125 (543)
                      ++...+|+++.|.|.... +.-....|+.++. -+....+....+.            ....-++..++|+|+++..+..
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~  112 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL  112 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence            466778999999999543 3346788997543 2321111122221            1122246678999999999999


Q ss_pred             ccEEEEEecccce
Q psy3718         126 ALFTCEIKSQKIS  138 (543)
Q Consensus       126 G~Y~C~a~n~~~s  138 (543)
                      |=|+|+|....+.
T Consensus       113 GCYtc~~ks~~~k  125 (251)
T PHA02982        113 GCFTCEAKDAEGK  125 (251)
T ss_pred             CceEEEEecCCCc
Confidence            9999999986544

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=93.49  E-value=0.18  Score=39.58  Aligned_cols=32  Identities=16%  Similarity=-0.040  Sum_probs=24.5

Q ss_pred             CceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718          18 RVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS   49 (543)
Q Consensus        18 ~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~   49 (543)
                      +-+|.|.+    |+|.|.|...+..... .+..|.|.
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            45999999    9999999999875543 44566664

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=93.29  E-value=0.16  Score=37.19  Aligned_cols=22  Identities=23%  Similarity=0.250  Sum_probs=16.5

Q ss_pred             eEEEec----CCeEEEEEEecCCCCC
Q psy3718          20 LLPIGE----SSFHFDPELLNPSFNG   41 (543)
Q Consensus        20 ~L~I~~----D~G~Y~C~a~n~~g~~   41 (543)
                      .|.|..    |.|.|+|.|.|.....
T Consensus        47 ~L~i~~~~~~~~~~y~C~a~n~~l~~   72 (82)
T cd05759          47 TLPITPSDHDTGRTFTCRARNEALPT   72 (82)
T ss_pred             EEEEeCceecCCCEEEEEEcCccCCC
Confidence            466666    6779999999976543

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi

Probab=93.28  E-value=3.1  Score=38.66  Aligned_cols=128  Identities=19%  Similarity=0.128  Sum_probs=71.7

Q ss_pred             cCCCCccceEEEEEEEEEcCCCCCCCCccEE-EeccCC--CCCCCCeeeEEEec----CCCeEEEEeeCCCCCCCCccee
Q psy3718         210 VPAPEIIWKTYHIRIVAENEIGSSEPSDTVT-ILTAEE--APSGPPTHIKVEAT----DQNTLKVSWSPPERDHWNGVIQ  282 (543)
Q Consensus       210 ~p~p~~~w~~y~~~v~a~n~~G~~~~s~~~~-~~t~~~--~p~~~P~~~~~~~~----~~~~i~l~W~~~~~~~~~~~i~  282 (543)
                      .|+     ..|.+++.+.|.... .....+. ..+...  .-|.-|.+..+...    +-+++.|.|.+..+.    . .
T Consensus       136 ~~g-----~~Yliri~~~~~~e~-~~~~kV~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~----~-~  204 (300)
T PF10179_consen  136 KPG-----ERYLIRIQISNSDEG-PSTFKVQAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPDR----S-I  204 (300)
T ss_pred             CCC-----CeEEEEEEccCCCCC-ceEEEEEEecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecCCCC----C-c
Confidence            677     889999987764432 1122222 222221  22345667766543    348999999986543    2 5


Q ss_pred             EEEEEEEEcCCC-----------------CCceEEEEee--ecc-------CCceeEEEECCCCCCCEEEEEEEEEeCCC
Q psy3718         283 GYYVGYKETSTD-----------------KPFLFETVDF--SKE-------EGKEHHLTLSSLKTYTQYSVVVQALNKLG  336 (543)
Q Consensus       283 ~y~v~~~~~~~~-----------------~~~~~~~~~~--~~~-------~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G  336 (543)
                      .|.|..+.....                 .....+.+..  .+.       ......-+|.+|+||+.|.|.|.+.-..|
T Consensus       205 kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~~~G  284 (300)
T PF10179_consen  205 KYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVNGPSG  284 (300)
T ss_pred             eEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEEEEecCCC
Confidence            788876654332                 0000111111  111       11123457999999999999999987666


Q ss_pred             CCCCCcceeeec
Q psy3718         337 PGPMSEEVKQYT  348 (543)
Q Consensus       337 ~s~~s~~~~~~t  348 (543)
                      .+-+-....+.|
T Consensus       285 ~sl~Y~s~~VkT  296 (300)
T PF10179_consen  285 QSLPYRSKWVKT  296 (300)
T ss_pred             ceeecceEEEEe
Confidence            554444444444

The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.

>KOG4152|consensus

Probab=93.03  E-value=0.68  Score=45.24  Aligned_cols=71  Identities=21%  Similarity=0.402  Sum_probs=52.8

Q ss_pred             cceEEEEEEEEEcCCCCCCCCccEEEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEE
Q psy3718         216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGY  288 (543)
Q Consensus       216 ~w~~y~~~v~a~n~~G~~~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~  288 (543)
                      .-..|+|+|.+.|..|.+.++..+...+....-+.+|..+++... -..+.+.|+++.... .+.|..|..+.
T Consensus       656 ~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~ri~k~-~eGi~l~weppt~p~-sg~Iieys~yl  726 (830)
T KOG4152|consen  656 TGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGARIKKT-IEGISLVWEPPTKPG-SGTIIEYSPYL  726 (830)
T ss_pred             cccceeeeeeeeeccCCCchhhheeeeeccCCCCCCccccccccc-ccceeecccCCCCCC-CcceEEeehhh
Confidence            338999999999999999999888777654444456766665533 346899999997764 67777777654

>PHA03042 CD47-like protein; Provisional

Probab=92.90  E-value=0.22  Score=44.47  Aligned_cols=59  Identities=25%  Similarity=0.363  Sum_probs=41.6

Q ss_pred             ecCCCeEEEEEeecc-----CCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718          64 RRGEPSVLQCEAKGE-----KPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        64 ~~g~~~~l~C~~~g~-----p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      .=.+++.+.|.+...     ....+.|..++..+...++.            ..++|..... ..-.|+|+|.|.+.
T Consensus        29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------------n~aSL~~~f~-~~l~GNYTCEv~~l   92 (286)
T PHA03042         29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------------NTSSLKFNFS-KNLSGNYTCEAINK   92 (286)
T ss_pred             ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------------cceEEEEecc-ccCCCceeEEEeec
Confidence            347899999998764     45789999999887432221            1146766553 34479999999885

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=92.89  E-value=0.075  Score=40.11  Aligned_cols=60  Identities=20%  Similarity=0.308  Sum_probs=39.6

Q ss_pred             eEEEccCCeecCCC-CCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceeeeeeeecc
Q psy3718          82 GILWNMNNKRLDPK-SDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEAS  147 (543)
Q Consensus        82 ~i~W~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~~~~~~v~  147 (543)
                      -+.|..+..+.... .+.++.++.   ++   -.|.|+.+++.|+|.|.-.+++..|.|....+.+.
T Consensus        45 IltW~n~~~~~~~~~~n~r~~F~~---en---laLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVs  105 (108)
T PF11465_consen   45 ILTWKNDSTPSYNSSFNNRFNFTS---EN---LALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVS  105 (108)
T ss_dssp             EEEEETTEEEESSTTHHHHEEEET---TT---TEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEE
T ss_pred             EEEEcCCCcccccccccceEeeec---cC---ceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEE
Confidence            35676655544221 234555542   23   37999999999999999999999999876666554

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA02633 hypothetical protein; Provisional

Probab=92.81  E-value=0.12  Score=34.56  Aligned_cols=32  Identities=13%  Similarity=-0.136  Sum_probs=22.4

Q ss_pred             CceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718          18 RVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS   49 (543)
Q Consensus        18 ~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~   49 (543)
                      .+.|-|-+    |+|.|.|+.+|..-.. .+..|+|.
T Consensus        17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~   53 (63)
T PHA02633         17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC   53 (63)
T ss_pred             cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence            45788888    9999999999853222 33566663

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=92.63  E-value=0.2  Score=38.07  Aligned_cols=32  Identities=28%  Similarity=0.406  Sum_probs=26.7

Q ss_pred             EecceEEEeecCceeecceecCCCCCe-eeEEe
Q psy3718         510 SFNDNFTATYTEDIKLPCLTVGVPAPE-IIWKT  541 (543)
Q Consensus       510 ~~~~~~~~~~~~~~~l~c~~~g~p~p~-~~w~~  541 (543)
                      +......+..|+.++|.|.+.+.|.|. |.|..
T Consensus         6 ~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w   38 (98)
T cd05898           6 SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAW   38 (98)
T ss_pred             ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEE
Confidence            455778899999999999999999985 47754

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=92.43  E-value=0.12  Score=39.03  Aligned_cols=18  Identities=6%  Similarity=0.061  Sum_probs=16.3

Q ss_pred             eEEEec----CCeEEEEEEecC
Q psy3718          20 LLPIGE----SSFHFDPELLNP   37 (543)
Q Consensus        20 ~L~I~~----D~G~Y~C~a~n~   37 (543)
                      +|+|.+    |+|.|.|.+...
T Consensus        63 tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881          63 RVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             EEEECcCCcccCEEEEEEEEcc
Confidence            699999    999999999874

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=92.39  E-value=1.1  Score=33.38  Aligned_cols=69  Identities=19%  Similarity=0.457  Sum_probs=45.8

Q ss_pred             eecceeEeecCCCeEEEEEeecc-----CCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718          56 IKLRNQTSRRGEPSVLQCEAKGE-----KPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC  130 (543)
Q Consensus        56 ~~~~~~~v~~g~~~~l~C~~~g~-----p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  130 (543)
                      +.|+...+..|++++..|.....     ....|.|..|+..++.   .+++.-     ++..+++++.+.....+-.|-|
T Consensus         8 i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~---~qy~~i-----n~~~SsVT~~~~~~~~~~L~cC   79 (89)
T PF06328_consen    8 ISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG---SQYRVI-----NDTVSSVTLPNLNPTGATLFCC   79 (89)
T ss_dssp             EECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC---GCEEEE-----STTEEEEEESS--SSEEEEEEE
T ss_pred             EecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh---hHccee-----CCeEEEEEEccCCCCCceEEEE
Confidence            34666778899999999998643     4579999999987742   334332     2233778888877777777878


Q ss_pred             EE
Q psy3718         131 EI  132 (543)
Q Consensus       131 ~a  132 (543)
                      ..
T Consensus        80 ~l   81 (89)
T PF06328_consen   80 KL   81 (89)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=92.35  E-value=0.18  Score=38.41  Aligned_cols=31  Identities=10%  Similarity=-0.139  Sum_probs=22.5

Q ss_pred             CceEEEec----CCeEEEEEEe-cCCCCC-CCceEEE
Q psy3718          18 RVLLPIGE----SSFHFDPELL-NPSFNG-FPPLLLS   48 (543)
Q Consensus        18 ~g~L~I~~----D~G~Y~C~a~-n~~g~~-~s~~l~v   48 (543)
                      +.+|.|.|    |+|.|.|... .+.|.. ..+.|+|
T Consensus        60 ~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          60 STSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             ccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence            45899999    9999999765 444553 3456665

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=92.25  E-value=0.24  Score=36.46  Aligned_cols=29  Identities=14%  Similarity=-0.291  Sum_probs=19.5

Q ss_pred             CeEEecCceEEEec----CCeEEEEEEecCCCCC
Q psy3718          12 PRILLGRVLLPIGE----SSFHFDPELLNPSFNG   41 (543)
Q Consensus        12 ~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~   41 (543)
                      .++......|.|.+    |+|.|.|.+. +.|..
T Consensus        40 ~r~~~~~~GLlI~~~~~~dsG~Y~C~s~-E~gf~   72 (85)
T cd05872          40 FSYRVGTDGLLILVTSPEHSGTYRCYSE-EEGFQ   72 (85)
T ss_pred             cceEEeCCCCEEEECCHhhCEEEEEEEe-cCCCe
Confidence            34454444566766    9999999987 44544

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=92.19  E-value=0.071  Score=42.37  Aligned_cols=70  Identities=16%  Similarity=0.288  Sum_probs=38.2

Q ss_pred             EeecCCCeEEEEEeecc-----CCceEEEccCCeecCCCCCCce----------EEeeeecCCCceeeEEEEeeecCCCc
Q psy3718          62 TSRRGEPSVLQCEAKGE-----KPIGILWNMNNKRLDPKSDNRY----------TIREEILPNGVLSDLSIKRTERGDSA  126 (543)
Q Consensus        62 ~v~~g~~~~l~C~~~g~-----p~~~i~W~~~~~~i~~~~~~~~----------~~~~~~~~~~~~~~L~i~~~~~~D~G  126 (543)
                      ...=++++.|.|.+...     +...|.|.+++..+-.-+....          .+ .+. . .+..+|.+...+.- .|
T Consensus        23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i-~~l-~-kG~aSL~~~~~~a~-~G   98 (130)
T PF08204_consen   23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKI-SEL-L-KGNASLKMDKSDAV-EG   98 (130)
T ss_dssp             E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BE-GGG-G-GTB--EEEEHHHHH--E
T ss_pred             EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccch-hHh-h-CCCEEEEEcchhcc-cc
Confidence            34558999999999762     3467999998877632221111          11 111 1 12246888775544 89


Q ss_pred             cEEEEEecc
Q psy3718         127 LFTCEIKSQ  135 (543)
Q Consensus       127 ~Y~C~a~n~  135 (543)
                      .|+|.+...
T Consensus        99 nYTCeVt~~  107 (130)
T PF08204_consen   99 NYTCEVTEL  107 (130)
T ss_dssp             EEEEEEEET
T ss_pred             ceEEEEEec
Confidence            999999875

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=92.13  E-value=0.27  Score=38.97  Aligned_cols=23  Identities=13%  Similarity=0.060  Sum_probs=20.0

Q ss_pred             ceEEEec----CCeEEEEEEecCCCCC
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSFNG   41 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g~~   41 (543)
                      .+|+|.+    |+|.|.|.+.|..+..
T Consensus        80 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~  106 (116)
T cd05715          80 ASIVIHNLQFTDNGTYTCDVKNPPDIV  106 (116)
T ss_pred             eEEEEeeCCcccCEEEEEEEEeCCCCC
Confidence            4799999    9999999999987654

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=91.52  E-value=0.19  Score=39.22  Aligned_cols=31  Identities=13%  Similarity=-0.051  Sum_probs=22.7

Q ss_pred             ceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS   49 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~   49 (543)
                      -+|+|.|    |+|.|.|......... ....|.|.
T Consensus        72 asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          72 ASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             EEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence            3999999    9999999999854322 34566664

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=91.40  E-value=0.55  Score=35.22  Aligned_cols=21  Identities=5%  Similarity=-0.110  Sum_probs=17.5

Q ss_pred             CceEEEec----CCeEEEEEEecCC
Q psy3718          18 RVLLPIGE----SSFHFDPELLNPS   38 (543)
Q Consensus        18 ~g~L~I~~----D~G~Y~C~a~n~~   38 (543)
                      .+.|.|.+    |+|.|+|...|..
T Consensus        52 ~~~f~i~~v~~~~~G~Y~C~~~~~~   76 (91)
T cd05751          52 KAKFFIPSMKREHAGRYRCYYRSGV   76 (91)
T ss_pred             eEEEEccCCChhHCEEEEEEEECCC
Confidence            34688888    9999999999863

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=91.29  E-value=1  Score=42.25  Aligned_cols=21  Identities=14%  Similarity=0.340  Sum_probs=18.1

Q ss_pred             CeEEEEEeec-cCC-ceEEEccC
Q psy3718          68 PSVLQCEAKG-EKP-IGILWNMN   88 (543)
Q Consensus        68 ~~~l~C~~~g-~p~-~~i~W~~~   88 (543)
                      .++|.|.|.| .|. +.+.|.||
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            5799999999 454 89999999

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=91.18  E-value=0.28  Score=34.09  Aligned_cols=26  Identities=15%  Similarity=0.110  Sum_probs=19.4

Q ss_pred             ccccccccCceeeEEEEeCCCCCCCCCCccccccccccCC
Q psy3718         458 RNMYEELKSQGRGYLVPRGGPPPCPGSDETLYSRHRGESD  497 (543)
Q Consensus       458 ~~~~~~L~p~~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~  497 (543)
                      ...+++|.||.|+|.|+|              .+..|.-.
T Consensus        30 ~~~~~~L~~G~Y~l~V~a--------------~~~~~~~~   55 (66)
T PF07495_consen   30 SISYTNLPPGKYTLEVRA--------------KDNNGKWS   55 (66)
T ss_dssp             EEEEES--SEEEEEEEEE--------------EETTS-B-
T ss_pred             EEEEEeCCCEEEEEEEEE--------------ECCCCCcC
Confidence            778889999999999999              88777553

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology

Probab=90.92  E-value=5.8  Score=30.23  Aligned_cols=82  Identities=16%  Similarity=0.246  Sum_probs=56.1

Q ss_pred             CeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCC----CCEEEE
Q psy3718         252 PTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKT----YTQYSV  327 (543)
Q Consensus       252 P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p----~t~Y~~  327 (543)
                      |+++.+.--+...+..+|.+....   ..-..|.+.|+.............  ....+....+.+.....    ...|.|
T Consensus         2 ~~nlsC~~~~~~~m~CtW~~g~~~---~~~t~y~L~~~~~~~~~~~eC~~y--~~~~~~~~gC~~~~~~~~~~~~~~~~v   76 (99)
T PF09240_consen    2 PQNLSCFIYNLEYMNCTWEPGKEA---PPDTQYTLYYWYSPLEEEKECPHY--SKDSGTRIGCQFPVSEIDSSEFSQYNV   76 (99)
T ss_dssp             -EEEEEEEETTTEEEEEEECCTTC---STTEEEEEEEEETTSSSEEEESEE--EESTSSEEEEEEESCTT-TTTTSEEEE
T ss_pred             CeeCEEEEECCEEEEEEECCCCCC---CCcccEEEEEEcCCCCccccCCCc--cccCCceeEEEecCCCccccccceEEE
Confidence            668888877889999999987653   345799999998765443332222  22234567777776666    347999


Q ss_pred             EEEEEeCCCCC
Q psy3718         328 VVQALNKLGPG  338 (543)
Q Consensus       328 ~V~a~n~~G~s  338 (543)
                      .|.+.+..|.-
T Consensus        77 ~V~~ss~~~~i   87 (99)
T PF09240_consen   77 CVNGSSSAGSI   87 (99)
T ss_dssp             EEEEEETTEEE
T ss_pred             EEEeccCCCcc
Confidence            99998877643

They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=90.67  E-value=0.27  Score=37.30  Aligned_cols=32  Identities=22%  Similarity=0.325  Sum_probs=28.7

Q ss_pred             ecceEEEeecCceeecceecCCCCCe-eeEEec
Q psy3718         511 FNDNFTATYTEDIKLPCLTVGVPAPE-IIWKTF  542 (543)
Q Consensus       511 ~~~~~~~~~~~~~~l~c~~~g~p~p~-~~w~~~  542 (543)
                      ++..+.|..|+.+.|.|.+..+|.|+ +.|.|.
T Consensus         9 ~~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~   41 (101)
T cd05860           9 INTTIFVNAGENLDLIVEYEAYPKPEHQQWIYM   41 (101)
T ss_pred             CCceEEEECCCCEEEEEEEEeCCCCeeeEEEcC
Confidence            44678999999999999999999998 999874

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>COG4733 Phage-related protein, tail component [Function unknown]

Probab=90.26  E-value=4.7  Score=42.35  Aligned_cols=28  Identities=21%  Similarity=0.455  Sum_probs=24.1

Q ss_pred             ceeEEEECCCCCCCEEEEEEEEEeCCCCC
Q psy3718         310 KEHHLTLSSLKTYTQYSVVVQALNKLGPG  338 (543)
Q Consensus       310 ~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s  338 (543)
                      ....+.+.++-+ ..|.++|+|+|..|..
T Consensus       658 ~~~~~~~~gi~~-GqY~i~VrAiN~~g~~  685 (952)
T COG4733         658 SAAGFDVEGIPA-GQYAIRVRAINVFEPN  685 (952)
T ss_pred             cccceeecCcCc-cceEEEEEEeeccCCC
Confidence            567889999988 5899999999999854

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=89.75  E-value=0.37  Score=36.38  Aligned_cols=22  Identities=27%  Similarity=0.730  Sum_probs=19.4

Q ss_pred             cCceeecceecCC-CCC-eeeEEe
Q psy3718         520 TEDIKLPCLTVGV-PAP-EIIWKT  541 (543)
Q Consensus       520 ~~~~~l~c~~~g~-p~p-~~~w~~  541 (543)
                      ++.++|.|.+.|. |.+ .|+|.|
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~   37 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLR   37 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEE
Confidence            6789999999995 775 999987

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>PLN02533 probable purple acid phosphatase

Probab=89.72  E-value=7.6  Score=38.85  Aligned_cols=90  Identities=14%  Similarity=0.205  Sum_probs=54.9

Q ss_pred             CCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEE--EEee----eccCCceeEEEECCCCC
Q psy3718         248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFE--TVDF----SKEEGKEHHLTLSSLKT  321 (543)
Q Consensus       248 p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~i~~L~p  321 (543)
                      .+..|+.+++.-.+.+++.|+|......   .+    .|.|....+.-.....  ....    ...++..+...|++|+|
T Consensus        40 ~~~~P~qvhls~~~~~~m~V~W~T~~~~---~~----~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p  112 (427)
T PLN02533         40 DPTHPDQVHISLVGPDKMRISWITQDSI---PP----SVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKP  112 (427)
T ss_pred             CCCCCceEEEEEcCCCeEEEEEECCCCC---CC----EEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCC
Confidence            3457889999887889999999987542   12    2556443221111100  0000    01134567889999999


Q ss_pred             CCEEEEEEEEEeCCCCCCCCcceeeeccC
Q psy3718         322 YTQYSVVVQALNKLGPGPMSEEVKQYTAE  350 (543)
Q Consensus       322 ~t~Y~~~V~a~n~~G~s~~s~~~~~~t~~  350 (543)
                      ++.|.++|-.      ...+....|+|.+
T Consensus       113 ~T~Y~Yrvg~------~~~s~~~~F~T~p  135 (427)
T PLN02533        113 NTVYYYKCGG------PSSTQEFSFRTPP  135 (427)
T ss_pred             CCEEEEEECC------CCCccceEEECCC
Confidence            9999999831      1235566777753

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=89.59  E-value=1  Score=34.97  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=15.9

Q ss_pred             CCCCCcEEEEeccCeEEEEccCC
Q psy3718         355 QPPQDNTCTTLTSQTIRVSWVSP  377 (543)
Q Consensus       355 ~~P~~~~~~~~~~~~v~l~W~~p  377 (543)
                      .+|.++++...+ ....|.|+++
T Consensus        23 p~P~nv~~~s~n-f~~iL~W~~~   44 (107)
T PF01108_consen   23 PAPQNVTVDSVN-FKHILRWDPG   44 (107)
T ss_dssp             SSCEEEEEEEET-TEEEEEEEES
T ss_pred             CCCCeeEEEEEC-CceEEEeCCC
Confidence            478889887665 4477888864

...

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=89.55  E-value=0.3  Score=37.22  Aligned_cols=25  Identities=16%  Similarity=0.369  Sum_probs=22.3

Q ss_pred             EeecCceeecceecC-CCCCe--eeEEe
Q psy3718         517 ATYTEDIKLPCLTVG-VPAPE--IIWKT  541 (543)
Q Consensus       517 ~~~~~~~~l~c~~~g-~p~p~--~~w~~  541 (543)
                      +.+|+.+.|.|.+.| +|.+.  |+|+|
T Consensus        13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~r   40 (100)
T cd05755          13 QPVGKNYTLQCDVPGVAPRQNLTVVLLR   40 (100)
T ss_pred             ccCCCcEEEEEEEcCcCCCCcEEEEEee
Confidence            479999999999999 59998  69997

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=89.16  E-value=0.71  Score=31.89  Aligned_cols=43  Identities=14%  Similarity=0.098  Sum_probs=27.9

Q ss_pred             ccEEEeecCCCeEEecCceEEEec---C-CeEEEEEEecCCCCCCCceEEE
Q psy3718           2 ENFFFYRGFNPRILLGRVLLPIGE---S-SFHFDPELLNPSFNGFPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~~~~~~~~~g~L~I~~---D-~G~Y~C~a~n~~g~~~s~~l~v   48 (543)
                      .++.|+++.... .+.+.+|-+.+   | .|.|+|.+++   ...+..|.|
T Consensus        17 tsi~W~kG~~~~-~~~~~tlnLGs~~~DPRG~Y~C~~s~---~~~~~~LQV   63 (69)
T cd07691          17 TNITWKKGKEIL-EVSNTLLDLGSRINDPRGTYSCKESE---PNKEKTLQV   63 (69)
T ss_pred             CcEEEecCcccc-cccccEEeccCcccCCCcceEecCcc---CCCcEEEEE
Confidence            368898843333 23367888888   4 7999999987   223344544

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=88.97  E-value=0.57  Score=41.83  Aligned_cols=36  Identities=8%  Similarity=-0.087  Sum_probs=25.9

Q ss_pred             ccEEEeecCC-------CeEEecCceEEEec----CCeEEEEEEecC
Q psy3718           2 ENFFFYRGFN-------PRILLGRVLLPIGE----SSFHFDPELLNP   37 (543)
Q Consensus         2 ~~~~~~~~~~-------~~~~~~~g~L~I~~----D~G~Y~C~a~n~   37 (543)
                      |+|+|...++       ...+...|.|.+.+    ++|.|+|..+-.
T Consensus        13 P~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   13 PTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             CceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence            6788965322       22334578999999    999999987754

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA03052 Hypothetical protein; Provisional

Probab=88.84  E-value=1.9  Score=29.51  Aligned_cols=45  Identities=16%  Similarity=0.321  Sum_probs=33.1

Q ss_pred             cceeEeecCCCeEEEEEeeccC---CceEEEccCCeecCCCC---CCceEE
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGEK---PIGILWNMNNKRLDPKS---DNRYTI  102 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~p---~~~i~W~~~~~~i~~~~---~~~~~~  102 (543)
                      |..+.+..|.+++|.|.+.-.+   .+.|.|.-|+..+.-++   +.|+..
T Consensus         4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~d~~g~gRI~~   54 (69)
T PHA03052          4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEEDDDDGDGRISI   54 (69)
T ss_pred             CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEeccccCCCcceEe
Confidence            4567889999999999996432   47899999998883333   445543

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=88.56  E-value=0.53  Score=36.53  Aligned_cols=31  Identities=10%  Similarity=0.228  Sum_probs=27.1

Q ss_pred             cceEEEeecCceeecceecCCC-CCeeeEEec
Q psy3718         512 NDNFTATYTEDIKLPCLTVGVP-APEIIWKTF  542 (543)
Q Consensus       512 ~~~~~~~~~~~~~l~c~~~g~p-~p~~~w~~~  542 (543)
                      +..+.+..|++++|.|.+.+.+ ...+.|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq   38 (106)
T cd04980           7 PATLSVSPGESATISCKASQSVSSNYLAWYQQ   38 (106)
T ss_pred             CCcEEECCCCCEEEEEEECCCCCCCcEEEEEE
Confidence            5568899999999999999887 788999974

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=88.52  E-value=0.41  Score=37.30  Aligned_cols=21  Identities=19%  Similarity=-0.021  Sum_probs=18.1

Q ss_pred             ceEEEec----CCeEEEEEEecCCC
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSF   39 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g   39 (543)
                      -+|.|.+    |+|.|.|.+.+..+
T Consensus        70 ~~L~I~~~~~~DsG~Y~C~~~~~~~   94 (109)
T cd04983          70 SSLHISAAQLSDSAVYFCALSESGG   94 (109)
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCC
Confidence            3899999    99999999998653

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=88.37  E-value=0.4  Score=37.01  Aligned_cols=20  Identities=15%  Similarity=-0.042  Sum_probs=18.2

Q ss_pred             eEEEec----CCeEEEEEEecCCC
Q psy3718          20 LLPIGE----SSFHFDPELLNPSF   39 (543)
Q Consensus        20 ~L~I~~----D~G~Y~C~a~n~~g   39 (543)
                      +|+|.+    |+|.|.|.+.+..+
T Consensus        68 sL~I~~v~~~D~G~Y~C~v~~~~~   91 (105)
T cd00099          68 TLTISSLQPEDSAVYYCAVSLSGG   91 (105)
T ss_pred             EEEECCCCHHHCEEEEEEEecCCC
Confidence            899999    99999999998765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]

Probab=88.03  E-value=17  Score=34.02  Aligned_cols=116  Identities=17%  Similarity=0.110  Sum_probs=62.8

Q ss_pred             eEEEEEEEEEcCCCCCCCCccEEEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCc
Q psy3718         218 KTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPF  297 (543)
Q Consensus       218 ~~y~~~v~a~n~~G~~~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~  297 (543)
                      ..|.+.+.+.+..+.-..+....-.+....|+ .-.++++.....+.+.|+|..+...      ..|.| |+........
T Consensus       135 ~~~~~~Iia~~f~~~~sfsf~gVE~~~~~~P~-ei~~~~~~~d~~~~i~ls~dg~~~~------~yy~I-Y~~~~g~e~~  206 (343)
T COG3401         135 EKYMELIIAADFQMGKSFSFTGVEATPKAEPK-EITNVRVSFDLGNNIELSEDGSEAE------DYYRI-YASDSGNEEY  206 (343)
T ss_pred             cceeeeEEeecccccceeeeeeeecccccCCc-eeeeeeeecCCCCcceeeccCcccc------ceEEE-eccCCccccc
Confidence            78889998887665543331111112222332 3334455566788999999987643      26666 4444333322


Q ss_pred             eEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCC-CCCCCcceeee
Q psy3718         298 LFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG-PGPMSEEVKQY  347 (543)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G-~s~~s~~~~~~  347 (543)
                      .....      ...+.+...--..+..|.+.|.++...| .+..+....+.
T Consensus       207 ~~ia~------t~~n~y~d~~eglga~~~y~VTtVd~~~~es~lp~~~t~~  251 (343)
T COG3401         207 GFIAQ------TTENSYYDVKEGLGAVEYYKVTTVDNTGFESDLPNEPTVG  251 (343)
T ss_pred             cceee------ccccchhhhhhccCceeEEEEEEEcCCcceeccCCccccc
Confidence            22211      1223333333334778888888887555 55555544433

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=87.78  E-value=0.57  Score=34.88  Aligned_cols=22  Identities=36%  Similarity=0.863  Sum_probs=17.9

Q ss_pred             cCceeecc-eecCCCCCeeeEEe
Q psy3718         520 TEDIKLPC-LTVGVPAPEIIWKT  541 (543)
Q Consensus       520 ~~~~~l~c-~~~g~p~p~~~w~~  541 (543)
                      ++.+.|.| ..-|+|+|+|+|+.
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~   36 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYL   36 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEE
Confidence            78999999 55567999999985

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd00098 IgC Immunoglobulin Constant domain

Probab=86.88  E-value=0.48  Score=35.77  Aligned_cols=24  Identities=25%  Similarity=0.649  Sum_probs=21.0

Q ss_pred             eecCceeecceecCC-C-CCeeeEEe
Q psy3718         518 TYTEDIKLPCLTVGV-P-APEIIWKT  541 (543)
Q Consensus       518 ~~~~~~~l~c~~~g~-p-~p~~~w~~  541 (543)
                      ..|..++|.|.+.|. | .+.|+|.|
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~   36 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLK   36 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEE
Confidence            368899999999998 7 47899997

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=85.81  E-value=1.7  Score=36.88  Aligned_cols=37  Identities=11%  Similarity=-0.165  Sum_probs=26.5

Q ss_pred             cCceEEEec----CCeEEEEEEe-cCCC-CC-CCceEEEeCCCe
Q psy3718          17 GRVLLPIGE----SSFHFDPELL-NPSF-NG-FPPLLLSSAPPE   53 (543)
Q Consensus        17 ~~g~L~I~~----D~G~Y~C~a~-n~~g-~~-~s~~l~v~~~p~   53 (543)
                      .+.+|+|.+    |+|.|.|... =+.| .. ..+.|.|...-.
T Consensus        83 ~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~~~  126 (189)
T PHA02987         83 NESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTTDSY  126 (189)
T ss_pred             CcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEchhh
Confidence            567999999    9999999544 4445 33 557888866543

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=85.02  E-value=12  Score=27.73  Aligned_cols=53  Identities=13%  Similarity=0.116  Sum_probs=32.3

Q ss_pred             CeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccce
Q psy3718          68 PSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS  138 (543)
Q Consensus        68 ~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s  138 (543)
                      ...|.+.+.+. ...+.|+-||..+..... ..             .+.+   .+...|.|+-.+....|.
T Consensus        31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~-~~-------------~~~~---~~~~~G~h~l~vvD~~G~   83 (89)
T PF06832_consen   31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQP-GH-------------QLFW---QPDRPGEHTLTVVDAQGR   83 (89)
T ss_pred             cceEEEEEeCC-CCcEEEEECCEEcccCCC-CC-------------eEEe---CCCCCeeEEEEEEcCCCC
Confidence            56677777666 459999999999832111 11             1222   234567777777666554

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>cd00096 Ig Immunoglobulin domain

Probab=84.86  E-value=1.6  Score=29.83  Aligned_cols=22  Identities=23%  Similarity=0.196  Sum_probs=18.2

Q ss_pred             cCceEEEec----CCeEEEEEEecCC
Q psy3718          17 GRVLLPIGE----SSFHFDPELLNPS   38 (543)
Q Consensus        17 ~~g~L~I~~----D~G~Y~C~a~n~~   38 (543)
                      ....|.|.+    |+|.|.|.+.+..
T Consensus        41 ~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096          41 GSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             eEEEEEECccCcccCcEEEEEEecCc
Confidence            345888888    9999999999865

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=84.43  E-value=1.2  Score=33.92  Aligned_cols=18  Identities=11%  Similarity=0.169  Sum_probs=16.0

Q ss_pred             eEEEec----CCeEEEEEEecC
Q psy3718          20 LLPIGE----SSFHFDPELLNP   37 (543)
Q Consensus        20 ~L~I~~----D~G~Y~C~a~n~   37 (543)
                      +|.|.+    |+|.|.|.+.+.
T Consensus        64 ~L~I~~~~~~Dsg~Y~C~~~~~   85 (98)
T cd04984          64 SLTISGAQTEDEADYYCQVWDS   85 (98)
T ss_pred             EEEECCCChhhCEEEEEEEccC
Confidence            699999    999999998764

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=83.18  E-value=1.3  Score=33.69  Aligned_cols=19  Identities=0%  Similarity=-0.060  Sum_probs=16.8

Q ss_pred             eEEEec----CCeEEEEEEecCC
Q psy3718          20 LLPIGE----SSFHFDPELLNPS   38 (543)
Q Consensus        20 ~L~I~~----D~G~Y~C~a~n~~   38 (543)
                      +|.|.+    |+|.|.|.+.+..
T Consensus        65 ~L~I~~v~~~DsG~Y~C~~~~~~   87 (98)
T cd05716          65 TVTLNQLRKEDAGWYWCGVGDDG   87 (98)
T ss_pred             EEEEcCCCHHHCEEEEEEcccCC
Confidence            799999    9999999988754

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=82.17  E-value=1.3  Score=34.55  Aligned_cols=20  Identities=15%  Similarity=-0.129  Sum_probs=17.4

Q ss_pred             ceEEEec----CCeEEEEEEecCC
Q psy3718          19 VLLPIGE----SSFHFDPELLNPS   38 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~   38 (543)
                      .+|.|.+    |+|.|.|.+.+..
T Consensus        72 ~~L~I~~~~~~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          72 SSLTIKSAEPEDSAVYLCASSLGG   95 (110)
T ss_pred             cEEEECCCChhhCEEEEEEeeCCC
Confidence            3799999    9999999998754

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=81.82  E-value=5.9  Score=27.27  Aligned_cols=25  Identities=20%  Similarity=0.320  Sum_probs=19.5

Q ss_pred             EEEECCCCCCCEEEEEEEEEeCCCCC
Q psy3718         313 HLTLSSLKTYTQYSVVVQALNKLGPG  338 (543)
Q Consensus       313 ~~~i~~L~p~t~Y~~~V~a~n~~G~s  338 (543)
                      .+.+.+|.|| .|+|.|+|.+..|..
T Consensus        30 ~~~~~~L~~G-~Y~l~V~a~~~~~~~   54 (66)
T PF07495_consen   30 SISYTNLPPG-KYTLEVRAKDNNGKW   54 (66)
T ss_dssp             EEEEES--SE-EEEEEEEEEETTS-B
T ss_pred             EEEEEeCCCE-EEEEEEEEECCCCCc
Confidence            8889999888 799999999988743

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=80.62  E-value=2.1  Score=34.04  Aligned_cols=19  Identities=16%  Similarity=-0.061  Sum_probs=16.6

Q ss_pred             ceEEEec----CCeEEEEEEecC
Q psy3718          19 VLLPIGE----SSFHFDPELLNP   37 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~   37 (543)
                      .+|.|.+    |+|.|.|.....
T Consensus        80 ~sL~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          80 CSLLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             EEEEEccCChhhCeEEEEEEEcC
Confidence            3799999    999999988774

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=80.55  E-value=2.7  Score=28.83  Aligned_cols=35  Identities=9%  Similarity=-0.170  Sum_probs=20.0

Q ss_pred             ccEEEeecCCCeEEecCceEEEec---CCeEEEEEEecC
Q psy3718           2 ENFFFYRGFNPRILLGRVLLPIGE---SSFHFDPELLNP   37 (543)
Q Consensus         2 ~~~~~~~~~~~~~~~~~g~L~I~~---D~G~Y~C~a~n~   37 (543)
                      ++++|++.++...- .+..|.+.+   ++|.|+|.+.+.
T Consensus        19 ~~i~W~~n~~~~~g-~~~~~~~~~~~e~~G~Y~C~~~~~   56 (65)
T cd07692          19 DDIKWKKNDQVSQG-SDEKYLSLNHFSSSGYYHCTADNA   56 (65)
T ss_pred             CCceEEeCCccCCC-CCceEEeeccCCCCceEEEEeCCC
Confidence            34678765421111 223444444   799999999753

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=80.31  E-value=8  Score=36.88  Aligned_cols=77  Identities=14%  Similarity=0.180  Sum_probs=53.6

Q ss_pred             ceeEeecCCCeEEEEEeec---cCCceEEEccCCeecCCC---------------CCCceEEeee-ec-CCCceeeEEEE
Q psy3718          59 RNQTSRRGEPSVLQCEAKG---EKPIGILWNMNNKRLDPK---------------SDNRYTIREE-IL-PNGVLSDLSIK  118 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g---~p~~~i~W~~~~~~i~~~---------------~~~~~~~~~~-~~-~~~~~~~L~i~  118 (543)
                      ....+.+|..+.|.|..+.   .....+.|+.-|.++.+.               .+..+.+... .. .+-..++|+|+
T Consensus       272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk  351 (500)
T PHA02914        272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK  351 (500)
T ss_pred             ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence            3466778999999999875   334678898777665422               1233333321 01 12346799999


Q ss_pred             eeecCCCccEEEEEecc
Q psy3718         119 RTERGDSALFTCEIKSQ  135 (543)
Q Consensus       119 ~~~~~D~G~Y~C~a~n~  135 (543)
                      ++.-+.+|=|.|.|...
T Consensus       352 ka~I~N~GCY~~~a~~g  368 (500)
T PHA02914        352 KAHINNAGCYEAQAFMG  368 (500)
T ss_pred             eEEEEcCCceEEEEecC
Confidence            99999999999999885

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=80.24  E-value=3.7  Score=29.97  Aligned_cols=16  Identities=6%  Similarity=0.063  Sum_probs=12.7

Q ss_pred             CCeEEEEEEecCCCCC
Q psy3718          26 SSFHFDPELLNPSFNG   41 (543)
Q Consensus        26 D~G~Y~C~a~n~~g~~   41 (543)
                      |.+.|+|.|.|.....
T Consensus        56 ~g~~~~C~v~h~~l~~   71 (82)
T cd05761          56 DGAPIICRVDHPALKS   71 (82)
T ss_pred             CCCEEEEEEeChhcCC
Confidence            4569999999987653

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	543
1va9_A	122	Solution Structure Of The Second Fniii Domain Of Ds		7e-17
1va9_A	122	Solution Structure Of The Second Fniii Domain Of Ds		4e-05
2edx_A	134	Solution Structures Of The Fn3 Domain Of Human Rece		4e-12
2edx_A	134	Solution Structures Of The Fn3 Domain Of Human Rece		3e-07
2ed9_A	124	Solution Structure Of The Third Fibronectin Type Ii		1e-08
2ed9_A	124	Solution Structure Of The Third Fibronectin Type Ii		1e-06
1cfb_A	205	Crystal Structure Of Tandem Type Iii Fibronectin Do		2e-06
3lpw_A	197	Crystal Structure Of The Fniii-Tandem A77-A78 From		2e-06
2dlh_A	121	Solution Structure Of The Second Fn3 Domain Of Huma		4e-06
1x5g_A	116	The Solution Structure Of The Second Fibronectin Ty		4e-06
1x5h_A	132	The Solution Structure Of The Third Fibronectin Typ		5e-06
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		2e-05
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		2e-05
1u2h_A	99	X-Ray Structure Of The N-Terminally Truncated Human		3e-05
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		2e-04
2edw_A	107	Solution Structure Of The I-Set Domain (3537-3630)		2e-04
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		2e-04
1x5k_A	124	The Solution Structure Of The Sixth Fibronectin Typ		4e-04
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		5e-04
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		7e-04

>pdb|1VA9|A Chain A, Solution Structure Of The Second Fniii Domain Of Dscaml1 Protein Length = 122

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
           T E AP GPP  + ++     +++V+W  P+++  NGVI+GY +GY+E S      +  V
Sbjct: 10  TEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIV 69
Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
           +  K  G     TL +LK + QY VVVQA N+ G GP S E+   T E  P
Sbjct: 70  EM-KATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGP 119

>pdb|1VA9|A Chain A, Solution Structure Of The Second Fniii Domain Of Dscaml1 Protein Length = 122

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
           T E  P+ PP D T   +TSQ+I+V+W +P     NGVI+GY++ Y
Sbjct: 10  TEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGY 55

>pdb|2EDX|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor- Type Tyrosine-Protein Phosphatase F Length = 134

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S T+   TA+  PS PP  +   +    T++VSW PP  D  NGVI  Y V Y+ 
Sbjct: 1   GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEA 60
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
              +          S+E        L  L+ +T+Y V V+A   +GPGP S  V   T E
Sbjct: 61  VDGEDRGRHVVDGISREHSS---WDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDE 117
Query: 351 GTPEQPPQ 358
             P  PP+
Sbjct: 118 DVPSGPPR 125

>pdb|2EDX|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor- Type Tyrosine-Protein Phosphatase F Length = 134

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 341 SEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
           S  ++  TA+ TP  PPQ   C ++ S T+RVSWV PP  + NGVI  Y V Y
Sbjct: 6   SGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAY 58

>pdb|2ED9|A Chain A, Solution Structure Of The Third Fibronectin Type Iii Domain Of Human Netrin Receptor Dcc Length = 124

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 11/128 (8%)
Query: 228 NEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVG 287
           N  G    +D +T++T  + PS PP ++ +E  +  ++KVSW PP     NG I GY + 
Sbjct: 8   NRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIR 67
Query: 288 YKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQY 347
           +++T+  +    ET+     E        + L+  +QYS  V A+   G GP S     Y
Sbjct: 68  HRKTT--RRGEMETL-----EPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPS---NWY 117
Query: 348 TAEGTPEQ 355
           TAE TPE 
Sbjct: 118 TAE-TPEN 124

>pdb|2ED9|A Chain A, Solution Structure Of The Third Fibronectin Type Iii Domain Of Human Netrin Receptor Dcc Length = 124

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 333 NKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKV 391
           N+ GPG  ++++   T    P  PPQ+ +   + S++I+VSW+ PP  T NG I GYK+
Sbjct: 8   NRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKI 66

>pdb|1CFB|A Chain A, Crystal Structure Of Tandem Type Iii Fibronectin Domains From Drosophila Neuroglian At 2.0 Angstroms Length = 205

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 8/137 (5%)
Query: 217 WKTYHIRIVAENEIGSSEPS-DTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSP-PER 274
           W  Y  R++A N+IG+S PS  + +  T  + P   P ++  + T+ N L +SW+P PE 
Sbjct: 72  WANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEI 131
Query: 275 DHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNK 334
           +H N     YYV +K       +    +     + +++++ ++   T+ +Y + V A+N 
Sbjct: 132 EH-NAPNFHYYVSWKRDIPAAAWENNNI----FDWRQNNIVIADQPTFVKYLIKVVAIND 186
Query: 335 LGPGPM-SEEVKQYTAE 350
            G   + +EEV  Y+ E
Sbjct: 187 RGESNVAAEEVVGYSGE 203

>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The A-Band Of Titin Length = 197

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWN 278
           +Y+ R++AENE G   P++T   + A E P  PP  I +    +N++ +SW  PE D  +
Sbjct: 74  SYYFRVLAENEYGIGLPAETAESVKASERPL-PPGKITLMDVTRNSVSLSWEKPEHDGGS 132
Query: 279 GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
            ++ GY V  +   +DK     TV  +         T++ L    +YS  V A N+ G
Sbjct: 133 RIL-GYIVEMQTKGSDKWATCATVKVT-------EATITGLIQGEEYSFRVSAQNEKG 182

>pdb|2DLH|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human Receptor-Type Tyrosine-Protein Phosphatase Delta Length = 121

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S  V   T+E+APS  P  ++       T+ V W  PE    NG IQGY V Y  
Sbjct: 1   GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEP--NGQIQGYRVYYTM 58
Query: 291 TSTDKPFLFETVDFSKEEGKEHHL-TLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTA 349
             T         ++ K    +  + T+ +L     YSV V A   +G GP+S +++  T 
Sbjct: 59  DPTQ-----HVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQ 113
Query: 350 EGT 352
            G+
Sbjct: 114 TGS 116

>pdb|1X5G|A Chain A, The Solution Structure Of The Second Fibronectin Type Iii Domain Of Human Neogenin Length = 116

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
           GP  +++  A    ++ V+W  P     NG IQ Y + Y E  TDK    + VD S    
Sbjct: 19  GPAPNLRAYAASPTSITVTWETPVSG--NGEIQNYKLYYMEKGTDKE---QDVDVSS--- 70
Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEV 344
             H  T++ LK YT+YS  V A NK GPG  + +V
Sbjct: 71  --HSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDV 103

>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii Domain Of Human Neogenin Length = 132

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S  V + T  + PS  P ++ +E  +  ++ + W PP     NG I GY + Y++
Sbjct: 1   GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRK 60
Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
            S  K  + ET+      G +    +  L   T+Y+  V AL   G GP ++ +   T E
Sbjct: 61  ASR-KSDVTETL----VSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFE 115

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 116/301 (38%), Gaps = 37/301 (12%)
Query: 56  IKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLD----PKSDNRYTIREEILPNGV 111
           I+L+N+T+       L C+A+GE    I W    + +D     + D     R E+     
Sbjct: 5   IQLKNETTYENGQVTLVCDAEGEPIPEITW---KRAVDGFTFTEGDKSLDGRIEVKGQHG 61
Query: 112 LSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKK--QNYIFYVTASTNIGEGQ 169
            S L IK  +  DS  + CE  S+    Q+  Y       K   N   Y +      EG 
Sbjct: 62  SSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSW-----EGN 116
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVG-------VPAPEIIWKTYHI 222
           P  N++    +  PA I    D           L   + G        P  +  +  Y+ 
Sbjct: 117 PI-NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYN- 174
Query: 223 RIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGV-I 281
              A N IG+        IL   + PS  P  +K+    Q T KVS++ P  D   GV I
Sbjct: 175 -CTATNHIGTRFQE---YILALADVPSS-PYGVKIIELSQTTAKVSFNKP--DSHGGVPI 227
Query: 282 QGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMS 341
             Y V  KE ++      E     +  G +  + L++L+  T Y + V A+N  G G  S
Sbjct: 228 HHYQVDVKEVAS------EIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS 281
Query: 342 E 342
           +
Sbjct: 282 K 282

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 116/301 (38%), Gaps = 37/301 (12%)
Query: 56  IKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLD----PKSDNRYTIREEILPNGV 111
           I+L+N+T+       L C+A+GE    I W    + +D     + D     R E+     
Sbjct: 5   IQLKNETTYENGQVTLVCDAEGEPIPEITW---KRAVDGFTFTEGDKSLDGRIEVKGQHG 61
Query: 112 LSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKK--QNYIFYVTASTNIGEGQ 169
            S L IK  +  DS  + CE  S+    Q+  Y       K   N   Y +      EG 
Sbjct: 62  SSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSW-----EGN 116
Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVG-------VPAPEIIWKTYHI 222
           P  N++    +  PA I    D           L   + G        P  +  +  Y+ 
Sbjct: 117 PI-NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYN- 174
Query: 223 RIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGV-I 281
              A N IG+        IL   + PS  P  +K+    Q T KVS++ P  D   GV I
Sbjct: 175 -CTATNHIGTRFQE---YILALADVPSS-PYGVKIIELSQTTAKVSFNKP--DSHGGVPI 227
Query: 282 QGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMS 341
             Y V  KE ++      E     +  G +  + L++L+  T Y + V A+N  G G  S
Sbjct: 228 HHYQVDVKEVAS------EIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS 281
Query: 342 E 342
           +
Sbjct: 282 K 282

>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1 Length = 99

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           S APP F++ L +Q+ R G+  ++    +GE    + W  N + + P  D R    E   
Sbjct: 2   SKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRP--DQRRFAEE--- 56
Query: 108 PNGVLSDLSIKRTERGDSALFTCE 131
             G L  L I   ERGD+  +TC+
Sbjct: 57  AEGGLCRLRILAAERGDAGFYTCK 80

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
           APP F++K  +     GE    +C   G  PI I W  +N+ + P  + + T+ E     
Sbjct: 4   APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT--- 60
Query: 110 GVLSDLSIKRTERGDSALFTC 130
              + L++ +  +GD+  +TC
Sbjct: 61  ---ATLTVLKVTKGDAGQYTC 78

>pdb|2EDW|A Chain A, Solution Structure Of The I-Set Domain (3537-3630) Of Human Obscurin Length = 107

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           SS P  F   ++NQ +R G  +VLQCE     P+   W   ++ L  +  +RY++R++  
Sbjct: 5   SSGPARFIEDVKNQEAREGATAVLQCELNSAAPVE--WRKGSETL--RDGDRYSLRQD-- 58
Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLK 150
             G   +L I+     D+  ++C +  Q+ +S  +T  A  +K
Sbjct: 59  --GTKCELQIRGLAMADTGEYSC-VCGQERTSAMLTVRALPIK 98

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
           APP F++K  +     GE    +C   G  PI I W  +N+ + P  + + T+ E     
Sbjct: 4   APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT--- 60
Query: 110 GVLSDLSIKRTERGDSALFTC 130
              + L++ +  +GD+  +TC
Sbjct: 61  ---ATLTVLKVTKGDAGQYTC 78

>pdb|1X5K|A Chain A, The Solution Structure Of The Sixth Fibronectin Type Iii Domain Of Human Neogenin Length = 124

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 55/119 (46%), Gaps = 11/119 (9%)
Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQN--TLKVSWSPPERDHWNGVIQGYYVGY 288
           GSS  S T    T E  P+ PP  + V + +    T+ V+W PP     NG I GY + Y
Sbjct: 1   GSSGSSGTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEA--NGKITGYIIYY 58
Query: 289 KETSTDKPFLFETVDFSKEEGKEHHLT--LSSLKTYTQYSVVVQALNKLGPGPMSEEVK 345
              STD     E  D+  E    + LT  +  L   T Y   +QA N  G GPMSE V+
Sbjct: 59  ---STD--VNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQ 112

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           ++ PPE   K +NQ  R G  +   C A+G+ P  I+W  N K++   + +RYT+ E+  
Sbjct: 5   AAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVS-GTQSRYTVLEQ-- 61
Query: 108 PNGVLSDLSIKRTERG-DSALFTC 130
           P G+ S L I+    G D A + C
Sbjct: 62  PGGI-SILRIEPVRAGRDDAPYEC 84

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
           APP F  KL + ++  GE   LQ   +G +PI + W  +   +  +SDN +    E    
Sbjct: 476 APPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSE---- 531
Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQ 135
             ++ L   R E  ++  +TC+IK++
Sbjct: 532 -NIATLQFSRAEPANAGKYTCQIKNE 556

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	543
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	3e-55
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-34
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	8e-24
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-19
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	8e-44
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	2e-23
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	3e-19
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	1e-41
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	9e-23
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	3e-38
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	1e-17
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	1e-07
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	6e-38
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	1e-13
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	6e-38
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	5e-17
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-37
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	6e-32
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-14
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	5e-07
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	6e-37
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	1e-22
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	6e-36
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	2e-33
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	6e-23
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	4e-19
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	6e-04
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	3e-35
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	5e-30
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	2e-21
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	2e-19
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	1e-34
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	9e-20
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	9e-34
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	2e-29
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	4e-22
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	1e-33
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	5e-31
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	5e-06
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	7e-05
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	2e-33
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	1e-32
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	4e-08
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	9e-07
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	2e-33
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	5e-14
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	7e-33
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	2e-14
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	9e-33
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	3e-20
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	1e-13
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	1e-32
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	5e-23
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	4e-07
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	2e-32
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	1e-22
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	9e-18
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	3e-31
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	6e-08
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	9e-31
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	5e-04
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	3e-30
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	2e-10
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	5e-30
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	4e-12
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	6e-30
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	2e-15
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	4e-29
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	3e-14
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	5e-29
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	1e-22
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	2e-06
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	9e-29
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	1e-21
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	7e-15
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	7e-14
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	2e-27
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	3e-11
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	1e-06
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	2e-04
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	8e-27
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	1e-10
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	8e-07
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	1e-26
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	1e-11
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	5e-05
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	2e-26
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	1e-20
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	3e-26
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	2e-11
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	3e-26
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	2e-10
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	7e-08
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	2e-25
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	3e-25
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	6e-04
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	4e-25
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	2e-08
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	5e-06
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	1e-04
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	4e-24
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	2e-07
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	9e-07
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	1e-04
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	4e-24
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	3e-13
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	4e-24
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	2e-08
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	5e-05
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	5e-24
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	6e-07
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	1e-05
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	2e-05
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	1e-23
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	5e-07
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	5e-04
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	9e-04
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	2e-23
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	1e-20
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	2e-20
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	4e-06
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	2e-22
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	3e-08
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	1e-04
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	2e-04
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	7e-22
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	1e-06
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	3e-04
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	1e-21
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	1e-05
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	1e-05
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	1e-21
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	2e-05
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	6e-21
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	4e-07
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	7e-04
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	2e-20
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	3e-05
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	3e-20
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	5e-06
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	4e-20
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	1e-04
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	5e-04
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	1e-19
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	8e-07
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	2e-19
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	1e-17
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	3e-19
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	6e-06
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	3e-19
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	2e-07
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	7e-04
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	9e-19
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	1e-06
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	5e-18
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	3e-17
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	2e-09
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	1e-17
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	9e-16
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-17
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	4e-17
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	4e-06
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	1e-16
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	8e-06
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	3e-16
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	1e-04
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	3e-16
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	5e-16
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	4e-05
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	7e-16
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	5e-12
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	5e-11
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	1e-15
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	4e-05
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-15
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	6e-15
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-10
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	1e-15
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	6e-06
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-15
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-14
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	8e-14
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	9e-13
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-11
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-15
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	4e-13
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-15
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-14
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	7e-09
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-08
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	3e-15
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	1e-04
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	6e-15
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	2e-04
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	8e-15
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	5e-10
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	1e-14
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	1e-14
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	5e-06
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-14
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-06
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	2e-14
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	4e-04
2crm_A	120	Fibronectin type-III domain containing protein 3A;	2e-14
2crm_A	120	Fibronectin type-III domain containing protein 3A;	8e-05
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-14
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	1e-07
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	5e-14
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	1e-06
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	7e-14
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	5e-11
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	1e-13
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	2e-04
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	1e-13
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	5e-09
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	1e-13
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	2e-04
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-13
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	6e-13
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-09
2crz_A	110	Fibronectin type-III domain containing protein 3A;	2e-13
2crz_A	110	Fibronectin type-III domain containing protein 3A;	3e-05
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-13
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-08
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-13
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	2e-13
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	4e-09
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	2e-13
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	4e-04
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-13
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	5e-11
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	2e-13
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	1e-04
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	3e-13
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	4e-13
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-13
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	6e-10
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	5e-13
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-07
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	5e-13
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	5e-13
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	3e-07
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	7e-06
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-13
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-11
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	6e-13
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	1e-11
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	5e-10
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	7e-07
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	6e-13
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	4e-04
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	6e-13
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	2e-04
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	6e-13
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	7e-13
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	2e-12
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	2e-12
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-12
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-11
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-06
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-12
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	8e-10
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-10
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-10
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-10
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	9e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-07
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-06
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-04
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	3e-12
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	7e-05
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	4e-12
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	1e-09
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	4e-12
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-12
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	3e-09
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	6e-12
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-12
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	9e-11
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-08
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-05
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	6e-12
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-08
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	6e-12
2csp_A	130	RIM-BP2, RIM binding protein 2; FN3 domain, struct	2e-11
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-11
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-11
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	5e-07
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-06
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	4e-11
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	4e-11
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	3e-04
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	4e-11
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	4e-11
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-05
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	6e-11
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-09
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-09
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-07
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	6e-11
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	6e-11
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	7e-11
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	8e-11
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	1e-10
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-10
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-08
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-07
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	8e-06
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-10
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-06
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	5e-06
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	7e-05
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	2e-10
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-10
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-10
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	2e-10
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-10
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	5e-06
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	4e-10
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-05
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	4e-10
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-10
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-07
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-05
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	5e-10
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	5e-10
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	3e-04
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	5e-10
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	5e-10
3qt2_A	317	Interleukin-5 receptor subunit alpha; cytokine typ	6e-10
3qt2_A	317	Interleukin-5 receptor subunit alpha; cytokine typ	6e-06
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	7e-10
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	7e-10
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	7e-10
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	8e-10
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	8e-10
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-09
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-09
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-08
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	6e-06
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-09
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	4e-09
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-08
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	9e-06
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-09
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	9e-08
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-09
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	5e-06
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	1e-09
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	1e-09
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	1e-09
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	4e-07
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-09
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	2e-09
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	2e-09
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-09
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	3e-08
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-09
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	5e-07
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-09
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-09
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-07
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	5e-09
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-07
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	5e-05
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	5e-09
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	6e-09
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	3e-05
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	7e-09
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	9e-09
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	9e-09
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	9e-09
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	1e-05
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	1e-08
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	1e-08
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-08
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-08
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-08
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-07
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-07
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-06
1iar_B	207	Protein (interleukin-4 receptor alpha chain); cyto	1e-08
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-08
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	7e-08
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-07
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-04
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-04
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	1e-08
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	4e-04
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-08
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-07
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-05
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-08
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-08
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-08
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-08
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-08
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	3e-08
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-08
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-05
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	3e-08
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	1e-06
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	3e-08
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	9e-05
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-08
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-06
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	4e-08
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	1e-07
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	4e-08
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	3e-07
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	5e-06
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	4e-08
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	4e-08
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	3e-05
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-04
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	5e-08
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	1e-07
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	5e-08
2b5i_B	214	Interleukin-2 receptor beta chain; four-helix bund	5e-08
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	6e-08
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	6e-08
2erj_C	247	Cytokine receptor common gamma chain; immune syste	7e-08
2erj_C	247	Cytokine receptor common gamma chain; immune syste	5e-07
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	7e-08
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	9e-08
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-07
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-07
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	1e-07
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	4e-07
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	1e-07
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	1e-05
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	3e-07
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	3e-07
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	3e-07
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	1e-06
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	4e-07
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	4e-07
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	4e-07
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	5e-07
3dlq_R	211	Interleukin-22 receptor subunit alpha-1; cytokine-	6e-07
3dlq_R	211	Interleukin-22 receptor subunit alpha-1; cytokine-	6e-04
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	6e-07
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	6e-06
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	6e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	1e-06
2b5i_C	199	Cytokine receptor common gamma chain; four-helix b	1e-06
2b5i_C	199	Cytokine receptor common gamma chain; four-helix b	1e-04
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-06
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-04
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-04
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-06
2ens_A	96	Advanced glycosylation END product-specific recept	2e-06
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-06
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-06
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	6e-06
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	6e-06
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-04
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	9e-06
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-05
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-05
2w1n_A	238	O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrol	1e-05
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-05
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-05
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
3tgx_A	219	Interleukin-21 receptor; class I cytokine, class I	3e-05
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	3e-05
3og6_B	226	Interleukin 28 receptor, alpha (interferon, lambd	3e-05
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	3e-05
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	5e-05
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	6e-04
1y6k_R	214	Interleukin-10 receptor alpha chain; helix bundle,	5e-05
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	6e-05
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	9e-05
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	1e-04
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-04
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-04
3up1_A	223	Interleukin-7 receptor subunit alpha; cytokine rec	2e-04
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	3e-04
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	3e-04
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	4e-04
1uc6_A	109	CNTF receptor, ciliary neurotrophic factor recepto	6e-04
1fyh_B	229	Interferon-gamma receptor alpha chain; cytokine-re	8e-04

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  197 bits (501), Expect = 3e-55
 Identities = 54/353 (15%), Positives = 105/353 (29%), Gaps = 26/353 (7%)

Query: 56  IKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDL 115
           ++++N     G+ +  QC A G    G    +    +         +         ++  
Sbjct: 169 LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSS---RRFIASF 225

Query: 116 SIKRTERGDSALFTCEIKSQ--KISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKN 173
           ++  T + D+  + C I+++     S                    +             
Sbjct: 226 NVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGAT------YLW 279

Query: 174 VTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEII------WKTYHIRIVAE 227
           + L+ +                 Y            V +             Y I ++  
Sbjct: 280 IQLNAN---SINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLT 336

Query: 228 N--EIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYY 285
              E G+  P   +   T    P   P  ++V       + + W P   +          
Sbjct: 337 RPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLT 396

Query: 286 VGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVK 345
           V Y      +  + E V +  E     H T+++L  YT  SV +  +N  G    S+E+ 
Sbjct: 397 VHYCYQVGGQEQVREEVSWDTENSHPQH-TITNLSPYTNVSVKLILMNPEGRKE-SQELI 454

Query: 346 QYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
             T E  P   P ++   +   + I + W  P      GVI  Y++ Y    +
Sbjct: 455 VQTDEDLPGAVPTESIQGSTFEEKIFLQWREPT--QTYGVITLYEITYKAVSS 505

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  137 bits (345), Expect = 2e-34
 Identities = 40/202 (19%), Positives = 69/202 (34%), Gaps = 9/202 (4%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
           +    ++++  N  G    S  + + T E+ P   PT     +T +  + + W  P +  
Sbjct: 432 YTNVSVKLILMNPEGRK-ESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQT- 489

Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEE--GKEHHLTLSSLKTYTQYSVVVQALNK 334
             GVI  Y + YK  S+  P +  +    +    G E H     L   T YS  ++A   
Sbjct: 490 -YGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTA 548

Query: 335 LGPGPMSEEVKQYTAEGTPEQPPQDNTCT-TLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
            G GP +   +  T    P  P  +       T  T+ V        +    +  Y++V 
Sbjct: 549 KGFGPPA-TNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAH--SRGAPVSVYQIVV 605

Query: 394 GPSDTWYGDPKTDICTDIRASW 415
                      T+I        
Sbjct: 606 EEERPRRTKKTTEILKCYPVPI 627

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  104 bits (261), Expect = 8e-24
 Identities = 37/346 (10%), Positives = 81/346 (23%), Gaps = 23/346 (6%)

Query: 71  LQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC 130
           +  +         +WN++       +     I         +    I    +G  A+   
Sbjct: 96  VYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEV 155

Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFN 190
           ++     +          ++           S     G+      L              
Sbjct: 156 KVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSA---IGRTVAGDRLWLQGIDVRDAPLKE 212

Query: 191 DNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSG 250
              T++         +                R +   E G    +    ++     P  
Sbjct: 213 IKVTSSRRFIASFNVVNTTK------RDAGKYRCMIRTEGGVGISNYAELVVKE---PPV 263

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
           P    ++ +     L +  +    +  +G I    V Y   S             ++   
Sbjct: 264 PIAPPQLASVGATYLWIQLNANSING-DGPIVAREVEYCTASGSW--------NDRQPVD 314

Query: 311 EHHLTLSSLKTYTQYSVVVQALNK--LGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQ 368
                +  L   T+Y + V        G G     ++  T    P + P+      + S+
Sbjct: 315 STSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSR 374

Query: 369 TIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRAS 414
            I + W                V Y          + ++  D   S
Sbjct: 375 QITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENS 420

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 90.6 bits (224), Expect = 2e-19
 Identities = 38/347 (10%), Positives = 79/347 (22%), Gaps = 83/347 (23%)

Query: 104 EEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAST 163
              +      +L++    +        E  S    +    +  + L    N    +    
Sbjct: 384 GYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMN 443

Query: 164 NIGEGQPSKNVTL--------SPSNRVPARIAS--------------------------F 189
             G    S+ + +        +                                      
Sbjct: 444 PEGRK-ESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKA 502

Query: 190 NDNFTATYTEDIKLPCLTVGVPAPEII------WKTYHIRIVAENEIGSSEPSDTVTILT 243
             +F        +   ++        +        TY   I A    G   P+ T    T
Sbjct: 503 VSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPA-TNQFTT 561

Query: 244 AEEAPSGPPTHIKV-EATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
              APS P   ++       NT+ V   P         +  Y +  +E    +      +
Sbjct: 562 KISAPSMPAYELETPLNQTDNTVTVMLKPAH--SRGAPVSVYQIVVEEERPRRTKKTTEI 619

Query: 303 -----------------------------------DFSKEEGKEH-HLTLSSLKTYTQYS 326
                                               F+  + K +     + L  Y  Y 
Sbjct: 620 LKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYR 679

Query: 327 VVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVS 373
           +  QA ++       + V+  T      +P  +      T  T++ +
Sbjct: 680 IYFQAASRANGETKIDCVQVATKGAATPKPVPEP--EKQTDHTVKGT 724

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score =  156 bits (396), Expect = 8e-44
 Identities = 35/183 (19%), Positives = 61/183 (33%), Gaps = 11/183 (6%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
              Y   +   N +G S+ +  +TI   +   + P   +K    D N L V W+ P    
Sbjct: 71  NDRYLATLTVRNLVGKSDAA-VLTIPACDFQATHPVMDLKAFPKD-NMLWVEWTTP---- 124

Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
               ++ Y + +   S   P + +                 +L     Y + V  +   G
Sbjct: 125 -RESVKKYILEWCVLSDKAPCITDWQQEDG--TVHRTYLRGNLAESKCYLITVTPVYADG 181

Query: 337 PGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPS 396
           PG   E +K Y  +  P + P       +      + W   P+   NG I+ Y + Y   
Sbjct: 182 PGS-PESIKAYLKQAPPSKGPT-VRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTI 239

Query: 397 DTW 399
              
Sbjct: 240 IGN 242

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 99.5 bits (248), Expect = 2e-23
 Identities = 37/246 (15%), Positives = 68/246 (27%), Gaps = 43/246 (17%)

Query: 131 EIKSQKISSQQMT---YEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPA--- 184
            +   K   Q  T    + +       Y+  +T    +G+   +     +   +      
Sbjct: 47  TLTRWKSHLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVM 106

Query: 185 --RIASFNDNFTATYTEDIKLP-------CLTVGVPAPEIIWKT---------------- 219
             +    ++     +T   +         C+          W+                 
Sbjct: 107 DLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAE 166

Query: 220 ---YHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
              Y I +      G   P  ++     +  PS  P  ++ +   +N   + W     D 
Sbjct: 167 SKCYLITVTPVYADGPGSPE-SIKAYLKQAPPSKGP-TVRTKKVGKNEAVLEWDQLPVDV 224

Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
            NG I+ Y + Y+            VD           TLSSL + T Y V + A    G
Sbjct: 225 QNGFIRNYTIFYRT--IIGNETAVNVD-----SSHTEYTLSSLTSDTLYMVRMAAYTDEG 277

Query: 337 PGPMSE 342
                E
Sbjct: 278 GKDGPE 283

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 87.2 bits (216), Expect = 3e-19
 Identities = 22/158 (13%), Positives = 42/158 (26%), Gaps = 22/158 (13%)

Query: 245 EEAPSGPPTH----IKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFE 300
           E+ PS  P+              T+++ W        NG I  Y V      +       
Sbjct: 1   EDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKS------- 53

Query: 301 TVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDN 360
                 +    +   L+   T  +Y   +   N +G    +        +     P   +
Sbjct: 54  ----HLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIP-ACDFQATHPVM-D 107

Query: 361 TCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
                    + V W +P        +K Y + +     
Sbjct: 108 LKAFPKDNMLWVEWTTP-----RESVKKYILEWCVLSD 140

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score =  147 bits (373), Expect = 1e-41
 Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 6/136 (4%)

Query: 217 WKTYHIRIVAENEIGSSEPSD-TVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
           W  Y  R++A N+IG+S PS  + +  T  + P   P ++  + T+ N L +SW+P    
Sbjct: 72  WANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEI 131

Query: 276 HWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKL 335
             N     YYV +K       +    +     + +++++ ++   T+ +Y + V A+N  
Sbjct: 132 EHNAPNFHYYVSWKRDIPAAAWENNNI----FDWRQNNIVIADQPTFVKYLIKVVAINDR 187

Query: 336 GPGPMS-EEVKQYTAE 350
           G   ++ EEV  Y+ E
Sbjct: 188 GESNVAAEEVVGYSGE 203

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 95.2 bits (237), Expect = 9e-23
 Identities = 26/154 (16%), Positives = 47/154 (30%), Gaps = 11/154 (7%)

Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
             P    +     +  ++ W     D+    I  Y + +  + T   +          + 
Sbjct: 7   NAPKLTGITCQA-DKAEIHWEQQG-DN-RSPILHYTIQFNTSFTPASWDAAYEKVPNTD- 62

Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQY-TAEGTPEQPPQDNTCTTLTSQ 368
                 +  +  +  Y+  V A NK+G  P S       T    P + P +         
Sbjct: 63  ---SSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPN 119

Query: 369 TIRVSWVSPPLITANGVIKGYKVVY---GPSDTW 399
            + +SW   P I  N     Y V +    P+  W
Sbjct: 120 NLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAW 153

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score =  135 bits (343), Expect = 3e-38
 Identities = 44/129 (34%), Positives = 59/129 (45%), Gaps = 3/129 (2%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S T+   TA+  PS PP  +   +    T++VSW PP  D  NGVI  Y V Y+ 
Sbjct: 1   GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEA 60

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
              +          S    +     L  L+ +T+Y V V+A   +GPGP S  V   T E
Sbjct: 61  VDGEDRGRHVVDGIS---REHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDE 117

Query: 351 GTPEQPPQD 359
             P  PP+ 
Sbjct: 118 DVPSGPPRK 126

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score = 78.6 bits (194), Expect = 1e-17
 Identities = 27/63 (42%), Positives = 34/63 (53%)

Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
           G    S  ++  TA+ TP  PPQ   C ++ S T+RVSWV PP  + NGVI  Y V Y  
Sbjct: 1   GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEA 60

Query: 396 SDT 398
            D 
Sbjct: 61  VDG 63

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEAT 260
           W  Y + + A  ++G    S  V + T E+ PSGPP  ++   +
Sbjct: 89  WTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESGPS 132

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122

 Score =  134 bits (340), Expect = 6e-38
 Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 1/120 (0%)

Query: 235 PSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTD 294
            S +  I T E AP GPP  + ++     +++V+W  P+++  NGVI+GY +GY+E S  
Sbjct: 2   SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPG 61

Query: 295 KPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPE 354
               +  V+  K  G     TL +LK + QY VVVQA N+ G GP S E+   T E  P 
Sbjct: 62  SNGQYSIVEM-KATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPS 120

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 338 GPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
           G  S      T E  P+ PP D T   +TSQ+I+V+W +P     NGVI+GY++ Y  + 
Sbjct: 1   GS-SGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENS 59

Query: 398 T 398
            
Sbjct: 60  P 60

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score =  135 bits (341), Expect = 6e-38
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 5/127 (3%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S  V + T  + PS  P ++ +E  +  ++ + W PP     NG I GY + Y++
Sbjct: 1   GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRK 60

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
            S         V      G +    +  L   T+Y+  V AL   G GP ++ +   T E
Sbjct: 61  ASRKSDVTETLVS-----GTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFE 115

Query: 351 GTPEQPP 357
              ++  
Sbjct: 116 SDLDETR 122

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score = 76.6 bits (189), Expect = 5e-17
 Identities = 19/63 (30%), Positives = 27/63 (42%)

Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
           G    S +V   T    P   PQ+ +     S++I + W  P   T NG I GYK+ Y  
Sbjct: 1   GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRK 60

Query: 396 SDT 398
           +  
Sbjct: 61  ASR 63

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  141 bits (357), Expect = 2e-37
 Identities = 73/386 (18%), Positives = 123/386 (31%), Gaps = 86/386 (22%)

Query: 52  PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDN-RYTIREEILPNG 110
           P   I+L+N+T+       L C+A+GE    I W            +     R E+    
Sbjct: 2   PHI-IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
             S L IK  +  DS  + CE                             A++ IG  Q 
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCE-----------------------------AASRIGGHQK 91

Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK----------TY 220
           S  + +        +  S    + +     I + C     P   I W+          T 
Sbjct: 92  SMYLDI----EYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTT 147

Query: 221 HIRI------------------------VAENEIGSSEPSDTVTILTAEEAPSGPPTHIK 256
           +++                          A N IG+      + +    + P   P  +K
Sbjct: 148 NLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA---DVP-SSPYGVK 203

Query: 257 VEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTL 316
           +    Q T KVS++ P+       I  Y V  KE +++   +  +       G +  + L
Sbjct: 204 IIELSQTTAKVSFNKPDSHG-GVPIHHYQVDVKEVASEIWKIVRS------HGVQTMVVL 256

Query: 317 SSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVS 376
           ++L+  T Y + V A+N  G G  S+     T       PP  +     + ++ ++S   
Sbjct: 257 NNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHG-QPSSGKSFKLSI-- 313

Query: 377 PPLITANGVIKGYKVVY---GPSDTW 399
                    I  Y V Y      D W
Sbjct: 314 TKQDDGGAPILEYIVKYRSKDKEDQW 339

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  126 bits (317), Expect = 6e-32
 Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 8/134 (5%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
             TY IR+ A N  G  + S      T       PP+ I  + +   + K+S +    D 
Sbjct: 262 NTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPS-IHGQPSSGKSFKLSITKQ--DD 318

Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
               I  Y V Y+    +  +L + V      G + H+ L  L+    Y V + A N+LG
Sbjct: 319 GGAPILEYIVKYRSKDKEDQWLEKKVQ-----GNKDHIILEHLQWTMGYEVQITAANRLG 373

Query: 337 PGPMSEEVKQYTAE 350
               +        +
Sbjct: 374 YSEPTVYEFSMPPK 387

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 74.1 bits (182), Expect = 2e-14
 Identities = 18/85 (21%), Positives = 26/85 (30%), Gaps = 4/85 (4%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
             P+F        S  G P  + C+ K   P  I W  +   L  K+        +    
Sbjct: 99  YAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNL----KTYST 154

Query: 110 GVLSDLSIKRTERGDSALFTCEIKS 134
           G    L I  T   D   + C   +
Sbjct: 155 GRKMILEIAPTSDNDFGRYNCTATN 179

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 26/142 (18%), Positives = 41/142 (28%), Gaps = 36/142 (25%)

Query: 138 SSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTL--------SPSNRVPARIASF 189
              Q     + L+    Y   V A    G+G  SK            SP + +  + +S 
Sbjct: 248 HGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPS-IHGQPSS- 305

Query: 190 NDNFTAT-----------------YTEDIK---LPCLTVGVPAPEII------WKTYHIR 223
             +F  +                 Y    K        V      II         Y ++
Sbjct: 306 GKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQ 365

Query: 224 IVAENEIGSSEPSDTVTILTAE 245
           I A N +G SEP+     +  +
Sbjct: 366 ITAANRLGYSEPTVYEFSMPPK 387

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score =  132 bits (333), Expect = 6e-37
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 7/129 (5%)

Query: 222 IRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVI 281
               + N  G    +D +T++T  + PS PP ++ +E  +  ++KVSW PP     NG I
Sbjct: 2   SSGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFI 61

Query: 282 QGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMS 341
            GY + +++T+       ET++             + L+  +QYS  V A+   G GP S
Sbjct: 62  TGYKIRHRKTTRRGE--METLE-----PNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPS 114

Query: 342 EEVKQYTAE 350
                 T E
Sbjct: 115 NWYTAETPE 123

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 92.4 bits (230), Expect = 1e-22
 Identities = 23/74 (31%), Positives = 39/74 (52%)

Query: 327 VVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVI 386
               + N+ GPG  ++++   T    P  PPQ+ +   + S++I+VSW+ PP  T NG I
Sbjct: 2   SSGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFI 61

Query: 387 KGYKVVYGPSDTWY 400
            GYK+ +  +    
Sbjct: 62  TGYKIRHRKTTRRG 75

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score =  136 bits (345), Expect = 6e-36
 Identities = 30/182 (16%), Positives = 68/182 (37%), Gaps = 24/182 (13%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
              Y++ +    +   S P    +       P  PPT ++      +T++V+W+PP    
Sbjct: 68  GLEYNVSVYTVKDDKESVPI---SDTIIPAVP--PPTDLRFTNIGPDTMRVTWAPPP--- 119

Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
            +  +  + V Y     ++     ++        ++ + L++L   T+Y V V ++ +  
Sbjct: 120 -SIDLTNFLVRYSPVKNEEDVAELSIS-----PSDNAVVLTNLLPGTEYVVSVSSVYEQH 173

Query: 337 PGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPS 396
                        + T    P     + +T+ +  V W++P        I GY++ + P 
Sbjct: 174 ESTPLR-----GRQKTGLDSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHHPE 223

Query: 397 DT 398
             
Sbjct: 224 HF 225

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score =  129 bits (326), Expect = 2e-33
 Identities = 46/289 (15%), Positives = 89/289 (30%), Gaps = 53/289 (18%)

Query: 137 ISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTL----SPSNRVPARIASFN-- 190
           + + Q +     L     Y   V    +  E  P  +  +     P++ +       +  
Sbjct: 53  VHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTD-LRFTNIGPDTM 111

Query: 191 ------------DNFTATYTE---DIKLPCLTVGVPAPEII------WKTYHIRIVAENE 229
                        NF   Y+    +  +  L++      ++         Y + + +  E
Sbjct: 112 RVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYE 171

Query: 230 IGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYK 289
              S P          +     PT I       N+  V W  P        I GY + + 
Sbjct: 172 QHESTPLRGRQ-----KTGLDSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHH 221

Query: 290 ETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTA 349
                     + V         + +TL++L   T+Y V + ALN     P+         
Sbjct: 222 PEHFSGRPREDRVP-----HSRNSITLTNLTPGTEYVVSIVALNGREESPLLI-----GQ 271

Query: 350 EGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
           + T    P+D      T  ++ +SW +P        ++ Y++ YG +  
Sbjct: 272 QSTVSDVPRDLEVVAATPTSLLISWDAP-----AVTVRYYRITYGETGG 315

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 99.5 bits (248), Expect = 6e-23
 Identities = 42/238 (17%), Positives = 71/238 (29%), Gaps = 40/238 (16%)

Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSK-----------NVTLSPS 179
           ++    IS        + L     Y+  V++     E  P +            +  S  
Sbjct: 138 DVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDI 197

Query: 180 NRVPARI-----ASFNDNFTATYTE---DIKLPCLTVGVPAPEII------WKTYHIRIV 225
                 +      +    +   +       +     V      I          Y + IV
Sbjct: 198 TANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIV 257

Query: 226 AENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYY 285
           A N    S           +   S  P  ++V A    +L +SW  P        ++ Y 
Sbjct: 258 ALNGREESPLLIGQ-----QSTVSDVPRDLEVVAATPTSLLISWDAP-----AVTVRYYR 307

Query: 286 VGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEE 343
           + Y ET  + P    TV      G +   T+S LK    Y++ V A+   G  P S +
Sbjct: 308 ITYGETGGNSPVQEFTVP-----GSKSTATISGLKPGVDYTITVYAVTGRGDSPASSK 360

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 88.4 bits (219), Expect = 4e-19
 Identities = 38/166 (22%), Positives = 57/166 (34%), Gaps = 18/166 (10%)

Query: 248 PSGPPTHIKVEA-TDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
           P  PPT++ +EA  D   L VSW           I GY +    T+  +    E V    
Sbjct: 1   PLSPPTNLHLEANPDTGVLTVSWERST----TPDITGYRITTTPTNGQQGNSLEEV---- 52

Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLT 366
               +   T  +L    +Y+V V  +        S  +        P  PP D   T + 
Sbjct: 53  VHADQSSCTFDNLSPGLEYNVSVYTVK---DDKESVPISDTIIPAVP--PPTDLRFTNIG 107

Query: 367 SQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIR 412
             T+RV+W  PP    +  +  + V Y P        +  I     
Sbjct: 108 PDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSISPSDN 149

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 20/160 (12%), Positives = 41/160 (25%), Gaps = 30/160 (18%)

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
           P   ++   I+      S       +  ++   + +   + L     Y+  + A     E
Sbjct: 209 PRATITGYRIRHHPEHFSG----RPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREE 264

Query: 168 GQPSKNVTLSPSNRVPA-RIASFNDN---------------FTATYTE---DIKLPCLTV 208
                    + S+      + +                   +  TY E   +  +   TV
Sbjct: 265 SPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTV 324

Query: 209 GVPAPEII------WKTYHIRIVAENEIGSSEPS-DTVTI 241
                            Y I + A    G S  S   ++I
Sbjct: 325 PGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISI 364

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score =  134 bits (340), Expect = 3e-35
 Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 23/182 (12%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
              Y++ +    +   S P   ++     E P    T +       +++ + W+P     
Sbjct: 69  GLEYNVSVYTVKDDKESVP---ISDTIIPEVP--QLTDLSFVDITDSSIGLRWTPLN--- 120

Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
            +  I GY +         P   + VD         + T++ L+    Y + V  L   G
Sbjct: 121 -SSTIIGYRITVVAAGEGIPIFEDFVD-----SSVGYYTVTGLEPGIDYDISVITLINGG 174

Query: 337 PGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPS 396
               +        + T   PP D   T +   T+RV+W  PP    +  +  + V Y P 
Sbjct: 175 ESAPTTLT-----QQTAVPPPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPV 225

Query: 397 DT 398
             
Sbjct: 226 KN 227

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score =  120 bits (302), Expect = 5e-30
 Identities = 41/293 (13%), Positives = 91/293 (31%), Gaps = 52/293 (17%)

Query: 133 KSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRV---------- 182
             + + + Q +     L     Y   V    +  E  P  +  +    ++          
Sbjct: 50  LEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVPQLTDLSFVDITD 109

Query: 183 --------PARIASFNDNFTATYTE---DIKLPCLTVGVPAPEII------WKTYHIRIV 225
                   P   ++    +  T       I +    V                 Y I ++
Sbjct: 110 SSIGLRWTPLNSSTI-IGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVI 168

Query: 226 AENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYY 285
                G S P+         +    PPT ++      +T++V+W+PP     +  +  + 
Sbjct: 169 TLINGGESAPTTLTQ-----QTAVPPPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFL 219

Query: 286 VGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVK 345
           V Y     ++     ++        ++ + L++L   T+Y V V ++ +           
Sbjct: 220 VRYSPVKNEEDVAELSIS-----PSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR--- 271

Query: 346 QYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
               + T    P     + +T+ +  V W++P        I GY++ + P   
Sbjct: 272 --GRQKTGLDSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHHPEHF 317

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 94.9 bits (236), Expect = 2e-21
 Identities = 43/273 (15%), Positives = 76/273 (27%), Gaps = 48/273 (17%)

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
            +  +    I     G+       I    + S    Y  +GL+   +Y   V    N GE
Sbjct: 120 NSSTIIGYRITVVAAGEGI----PIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGE 175

Query: 168 GQPSKNVTLSPSNRVP---------------------ARIASFNDNFTATYTEDIKLPCL 206
             P+     +                             + +F   ++    E+     L
Sbjct: 176 SAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDV-AEL 234

Query: 207 TVGVPAPEII------WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEAT 260
           ++      ++         Y + + +  E   S P          +     PT I     
Sbjct: 235 SISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQ-----KTGLDSPTGIDFSDI 289

Query: 261 DQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLK 320
             N+  V W  P        I GY + +           + V         + +TL++L 
Sbjct: 290 TANSFTVHWIAP-----RATITGYRIRHHPEHFSGRPREDRVP-----HSRNSITLTNLT 339

Query: 321 TYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
             T+Y V + ALN     P+     Q T     
Sbjct: 340 PGTEYVVSIVALNGREESPLLIGQ-QSTVSAHH 371

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 88.7 bits (220), Expect = 2e-19
 Identities = 31/153 (20%), Positives = 51/153 (33%), Gaps = 18/153 (11%)

Query: 248 PSGPPTHIKVEA-TDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
           P  PPT++ +EA  D   L VSW           I GY +    T+  +    E V    
Sbjct: 2   PLSPPTNLHLEANPDTGVLTVSWERST----TPDITGYRITTTPTNGQQGNSLEEV---- 53

Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLT 366
               +   T  +L    +Y+V V  +        S  +        P     D +   +T
Sbjct: 54  VHADQSSCTFDNLSPGLEYNVSVYTVK---DDKESVPISDTIIPEVP--QLTDLSFVDIT 108

Query: 367 SQTIRVSWVSPPLITANGVIKGYKVVYGPSDTW 399
             +I + W        +  I GY++    +   
Sbjct: 109 DSSIGLRWTPLN----SSTIIGYRITVVAAGEG 137

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score =  129 bits (325), Expect = 1e-34
 Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 9/137 (6%)

Query: 217 WKTYHIRIVAENEIGSSEPSDT----VTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPP 272
             TY  RI+A      ++ S+T         A   P   P  +++E   +  + + WS  
Sbjct: 80  QHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLA 139

Query: 273 ERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQAL 332
                  +I GYY  Y+ +S+   +   T+    E        ++ L+T T Y   +Q+ 
Sbjct: 140 SDA-DEHLITGYYAYYRPSSSAGEYFKATI----EGAHARSFKIAPLETATMYEFKLQSF 194

Query: 333 NKLGPGPMSEEVKQYTA 349
           +       S   +  T 
Sbjct: 195 SAASASEFSALKQGRTQ 211

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 87.2 bits (216), Expect = 9e-20
 Identities = 28/161 (17%), Positives = 52/161 (32%), Gaps = 14/161 (8%)

Query: 249 SGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPF-------LFET 301
           + PPT   V      ++ + W  P  D     I  + V Y+     K +        +  
Sbjct: 2   TYPPTPPNVTRLSDESVMLRWMVPRND--GLPIVIFKVQYRMVGKRKNWQTTNDNIPYGK 59

Query: 302 VDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQ----PP 357
             ++ E GK    +++ LK    Y   + A+        S    ++  +          P
Sbjct: 60  PKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVP 119

Query: 358 QDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
           +       +   + + W S        +I GY   Y PS +
Sbjct: 120 ELLEIEEYSETAVVLHW-SLASDADEHLITGYYAYYRPSSS 159

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score =  128 bits (324), Expect = 9e-34
 Identities = 32/182 (17%), Positives = 54/182 (29%), Gaps = 24/182 (13%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
              Y + + A  +  +S P+  V           PP   +V    + T+ +SW       
Sbjct: 84  ATKYEVSVYALKDTLTSRPAQGVVTTL---ENVSPPRRARVTDATETTITISWRTK---- 136

Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
               I G+ V     +   P           +      T++ L+  T Y + +  LN   
Sbjct: 137 -TETITGFQVDAVPANGQTPIQRTI------KPDVRSYTITGLQPGTDYKIYLYTLNDNA 189

Query: 337 PGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPS 396
                          T    P +      T  ++ VSW  P        I GY + Y   
Sbjct: 190 RSSPVV-----IDASTAIDAPSNLRFLATTPNSLLVSWQPP-----RARITGYIIKYEKP 239

Query: 397 DT 398
            +
Sbjct: 240 GS 241

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score =  116 bits (293), Expect = 2e-29
 Identities = 35/174 (20%), Positives = 57/174 (32%), Gaps = 22/174 (12%)

Query: 225 VAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGY 284
           +A +    S   + +     +      PT +K       +L   W+PP     N  + GY
Sbjct: 1   MAHHHHHHSSGLEVLF----QGPAIPAPTDLKFTQVTPTSLSAQWTPP-----NVQLTGY 51

Query: 285 YVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEV 344
            V         P     +           + +S L   T+Y V V AL        ++ V
Sbjct: 52  RVRVTPKEKTGPMKEINLA-----PDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGV 106

Query: 345 KQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
                      PP+    T  T  TI +SW +         I G++V   P++ 
Sbjct: 107 VTTL---ENVSPPRRARVTDATETTITISWRTK-----TETITGFQVDAVPANG 152

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 95.6 bits (238), Expect = 4e-22
 Identities = 43/258 (16%), Positives = 80/258 (31%), Gaps = 45/258 (17%)

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
           PN  L+   ++ T +  +      +K   ++    +   SGL     Y   V A  +   
Sbjct: 44  PNVQLTGYRVRVTPKEKTG----PMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLT 99

Query: 168 GQPSKNVTLSPSNRVPAR---IASFNDN---------------FTATYTEDIKLPCLTVG 209
            +P++ V  +  N  P R   +    +                F            +   
Sbjct: 100 SRPAQGVVTTLENVSPPRRARVTDATETTITISWRTKTETITGFQVDAVPANGQTPIQRT 159

Query: 210 VPAPEIIWK--------TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATD 261
           +      +          Y I +   N+   S P                P++++  AT 
Sbjct: 160 IKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDA-----STAIDAPSNLRFLATT 214

Query: 262 QNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKT 321
            N+L VSW PP        I GY + Y++  +    +                T++ L+ 
Sbjct: 215 PNSLLVSWQPP-----RARITGYIIKYEKPGSPPREVVPRPR-----PGVTEATITGLEP 264

Query: 322 YTQYSVVVQALNKLGPGP 339
            T+Y++ V AL       
Sbjct: 265 GTEYTIYVIALKNNQKSE 282

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score =  126 bits (318), Expect = 1e-33
 Identities = 33/158 (20%), Positives = 51/158 (32%), Gaps = 12/158 (7%)

Query: 246 EAPSGPPTHIKVEATDQNTLKVSWSPPE--RDHWNGVIQGYYVGYKETSTDKPFLFETVD 303
           + P  PP  ++      +T++++W+     +       + Y V +K              
Sbjct: 2   DLPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNA-- 59

Query: 304 FSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCT 363
                       ++ LK  T Y   V           S      T E  P  PP+D T  
Sbjct: 60  ----NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVV 115

Query: 364 --TLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTW 399
                 +TI V+W  P    ANG I GY + Y      
Sbjct: 116 SKEGKPKTIIVNWQPPS--EANGKITGYIIYYSTDVNA 151

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score =  118 bits (298), Expect = 5e-31
 Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 7/137 (5%)

Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQN--TLKVSWSPPERDH 276
            Y   ++      SS  S T    T E  P+ PP  + V + +    T+ V+W PP    
Sbjct: 76  LYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPS--E 133

Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
            NG I GY + Y      +   +         G      +  L   T Y   +QA N  G
Sbjct: 134 ANGKITGYIIYYSTDVNAEIHDWVIEPVV---GNRLTHQIQELTLDTPYYFKIQARNSKG 190

Query: 337 PGPMSEEVKQYTAEGTP 353
            GPMSE V+  T +   
Sbjct: 191 MGPMSEAVQFRTPKAHH 207

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 23/162 (14%), Positives = 42/162 (25%), Gaps = 43/162 (26%)

Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLS-----PSNRVPAR 185
             K +  ++  ++Y  +GLK    Y F V  +        S     +     P+   P  
Sbjct: 53  NTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPT-SPPKD 111

Query: 186 IASFNDNFTAT----------------------YTEDIKLP---CLTVGVPAPEIIW--- 217
           +   +                            Y+ D+       +   V    +     
Sbjct: 112 VTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQ 171

Query: 218 -----KTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTH 254
                  Y+ +I A N  G    S+ V   T +        H
Sbjct: 172 ELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPK----AHHHH 209

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
            NG ++   I  +   ++     +   + +   ++T++   L     Y F + A  + G 
Sbjct: 134 ANGKITGYIIYYSTDVNA--EIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGM 191

Query: 168 GQPSKNVT 175
           G  S+ V 
Sbjct: 192 GPMSEAVQ 199

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score =  126 bits (318), Expect = 2e-33
 Identities = 36/167 (21%), Positives = 57/167 (34%), Gaps = 9/167 (5%)

Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWN 278
            Y +++ A    G    S  V+  T +E PS  P  +          ++SW+ P     N
Sbjct: 70  DYEMKVCAYGAQGEGPYSSLVSCRTHQEVPS-EPGRLAFNVVSSTVTQLSWAEPAET--N 126

Query: 279 GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPG 338
           G I  Y V Y   + D   +        +  K   L + +L+    Y   V+A N  G G
Sbjct: 127 GEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWG 186

Query: 339 PMSEE-VKQYTAEGTPEQPPQDNTCTTLTSQ-----TIRVSWVSPPL 379
           P  E  +   T    P   P       + +Q        + +    L
Sbjct: 187 PEREAIINLATQPKRPMSIPIIPDIPIVDAQSGEDYDSFLMYSDDVL 233

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score =  124 bits (312), Expect = 1e-32
 Identities = 37/153 (24%), Positives = 55/153 (35%), Gaps = 14/153 (9%)

Query: 245 EEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDF 304
                G P +   +A     +  +W PP     +G   GY V Y      +         
Sbjct: 2   SHMDLGAPQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSESEAHLL--- 53

Query: 305 SKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTT 364
              + K   + L++L  Y  Y + V A    G GP S  V   T +  P   P       
Sbjct: 54  ---DSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVP-SEPGRLAFNV 109

Query: 365 LTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
           ++S   ++SW  P     NG I  Y+V YG  +
Sbjct: 110 VSSTVTQLSWAEPA--ETNGEITAYEVCYGLVN 140

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 34/208 (16%), Positives = 62/208 (29%), Gaps = 48/208 (23%)

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
           P+G      +K   +GDS     E ++  + S+  + E + L    +Y   V A    GE
Sbjct: 29  PSGKPMGYRVKYWIQGDS-----ESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGE 83

Query: 168 GQPSKNVTLSPSNRVPARIASFN-DNFTAT------------------Y---------TE 199
           G  S  V+      VP+       +  ++T                  Y           
Sbjct: 84  GPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDN 143

Query: 200 DIKLPCLTVGVPAPEIIW---------KTYHIRIVAENEIGSSEPSD-TVTILTAEEAPS 249
               P   V V  P+            + Y   + A N  G     +  + + T  + P 
Sbjct: 144 RPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPM 203

Query: 250 GPPTH-----IKVEATDQNTLKVSWSPP 272
             P       +  ++ +     + +S  
Sbjct: 204 SIPIIPDIPIVDAQSGEDYDSFLMYSDD 231

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 49.0 bits (117), Expect = 9e-07
 Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 5/49 (10%)

Query: 350 EGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
                  PQ+       S+ I  +W+ P     +G   GY+V Y     
Sbjct: 2   SHMDLGAPQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGD 45

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125

 Score =  122 bits (308), Expect = 2e-33
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 236 SDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDK 295
           S   +  + E+ P   P +++V   +    +V W P       G +QGY + Y +T +  
Sbjct: 2   SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSS 61

Query: 296 PFLFETVDFSKE--EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
                 ++      +G + H  L  L+ ++ Y++ V+ +N  G GP S +    T EG+ 
Sbjct: 62  KRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSG 121

Query: 354 EQPP 357
             P 
Sbjct: 122 --PS 123

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125

 Score = 67.8 bits (166), Expect = 5e-14
 Identities = 13/58 (22%), Positives = 24/58 (41%)

Query: 341 SEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
           S     ++ E  P   P +     + S    V W   PL +  G ++GY++ Y  + +
Sbjct: 2   SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQS 59

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score =  120 bits (304), Expect = 7e-33
 Identities = 38/123 (30%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S  V   T+E+APS  P  ++       T+ V W  PE    NG IQGY V Y  
Sbjct: 1   GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPE--EPNGQIQGYRVYYTM 58

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
             T     +   +           T+ +L     YSV V A   +G GP+S +++  T  
Sbjct: 59  DPTQHVNNWMKHN----VADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQT 114

Query: 351 GTP 353
           G+ 
Sbjct: 115 GSG 117

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
           G    S  V   T+E  P   P+D     L+S TI V W  P     NG I+GY+V Y  
Sbjct: 1   GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPE--EPNGQIQGYRVYYTM 58

Query: 396 SDTW 399
             T 
Sbjct: 59  DPTQ 62

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score =  131 bits (330), Expect = 9e-33
 Identities = 60/473 (12%), Positives = 113/473 (23%), Gaps = 137/473 (28%)

Query: 66  GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDS 125
            +P  L C     K +   W+      +   +  +T++ E                    
Sbjct: 104 EKPKNLSCIVNEGKKMRCEWDGGR---ETHLETNFTLKSE----------------WATH 144

Query: 126 ALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG---------------QP 170
               C+ K    +S              N   +V A   +G+                 P
Sbjct: 145 KFADCKAKRDTPTS---CTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNP 201

Query: 171 SKNVTLSPSNRVPARI----------------------ASFNDNFTATYTEDIKLPCLTV 208
             N+++  S  + + +                            ++    ED      + 
Sbjct: 202 PHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSF 261

Query: 209 GVPAPEIIWKTYHIRIVAENEIGS---SEPSDTVTILTAEEAPSGPPTHIK----VEATD 261
            V   +  +  Y  RI    E G    S+ S+  + +T E+ PS  P+            
Sbjct: 262 TVQDLKP-FTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQG 320

Query: 262 QNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKT 321
             T+++ W        NG I  Y V      +             +    +   L+   T
Sbjct: 321 YRTVQLVWKTLPPFEANGKILDYEVTLTRWKS-----------HLQNYTVNATKLTVNLT 369

Query: 322 YTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLIT 381
             +Y   +   N +G    +       A       P  +         + V W + P  +
Sbjct: 370 NDRYLATLTVRNLVGKSDAAVLT--IPACDFQATHPVMDLKAFPKDNMLWVEW-TTPRES 426

Query: 382 ANGVIKGYKVVY-------------------------------------------GPSDT 398
               I  + V+                                            G  ++
Sbjct: 427 VKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPES 486

Query: 399 WY--------GDPKTDICTDIRA-----SWVSPPLITANGVIKGYKVVYGPSD 438
                         T     +        W   P+   NG I+ Y + Y    
Sbjct: 487 IKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTII 539

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 93.5 bits (232), Expect = 3e-20
 Identities = 37/233 (15%), Positives = 66/233 (28%), Gaps = 40/233 (17%)

Query: 143 TYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTAT------ 196
             + +       Y+  +T    +G+   +     +   +    +                
Sbjct: 361 ATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEW 420

Query: 197 --------------YTEDIKLPCLT-----VGVPAPEII------WKTYHIRIVAENEIG 231
                              K PC+T      G      +       K Y I +      G
Sbjct: 421 TTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADG 480

Query: 232 SSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKET 291
              P  ++     +  PS  PT ++ +   +N   + W     D  NG I+ Y + Y+  
Sbjct: 481 PGSPE-SIKAYLKQAPPSKGPT-VRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTI 538

Query: 292 STDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEV 344
             ++      V+           TLSSL + T Y V + A    G     E  
Sbjct: 539 IGNE----TAVNVD---SSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT 584

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 72.7 bits (178), Expect = 1e-13
 Identities = 23/182 (12%), Positives = 54/182 (29%), Gaps = 17/182 (9%)

Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWN 278
                I+   ++  +    T+        P   P ++     +   ++  W         
Sbjct: 77  QLTCNILTFGQLEQNVYGITII----SGLPPEKPKNLSCIVNEGKKMRCEWDGG---RET 129

Query: 279 GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPG 338
            +   + +  +  +          D              S   +    V V+A N LG  
Sbjct: 130 HLETNFTLKSEWATHKFADCKAKRD-----TPTSCTVDYSTVYFVNIEVWVEAENALGKV 184

Query: 339 PMSEEVKQYTAEGTPEQPPQDNT--CTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPS 396
             S+ +           PP + +   +   S  ++++W +P +   + +I  Y + Y   
Sbjct: 185 T-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSI--KSVIILKYNIQYRTK 241

Query: 397 DT 398
           D 
Sbjct: 242 DA 243

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score =  122 bits (309), Expect = 1e-32
 Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 9/134 (6%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
             +Y+ R++AENE G   P++T   + A E P  PP  I +    +N++ +SW  PE D 
Sbjct: 72  GCSYYFRVLAENEYGIGLPAETAESVKASERP-LPPGKITLMDVTRNSVSLSWEKPEHD- 129

Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
               I GY V  +   +DK     TV            T++ L    +YS  V A N+ G
Sbjct: 130 GGSRILGYIVEMQTKGSDKWATCATVK-------VTEATITGLIQGEEYSFRVSAQNEKG 182

Query: 337 PGPMSEEVKQYTAE 350
                +      A+
Sbjct: 183 ISDPRQLSVPVIAK 196

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score = 95.9 bits (239), Expect = 5e-23
 Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 12/158 (7%)

Query: 244 AEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVD 303
           A + P GPP  +KV+   + ++ ++W PP  D     I+ Y V  +E++      + TV 
Sbjct: 2   AMDTP-GPPQDLKVKEVTKTSVTLTWDPPLLDG-GSKIKNYIVEKRESTRKA---YSTVA 56

Query: 304 FSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCT 363
            +     +    +  L+    Y   V A N+ G G  +E  +   A   P  PP   T  
Sbjct: 57  TN---CHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERP-LPPGKITLM 112

Query: 364 TLTSQTIRVSWVSPPLITANGVIKGYKVVY--GPSDTW 399
            +T  ++ +SW   P       I GY V      SD W
Sbjct: 113 DVTRNSVSLSW-EKPEHDGGSRILGYIVEMQTKGSDKW 149

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 31/140 (22%)

Query: 138 SSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPA-----RIASFNDN 192
           +  + +++   L++  +Y F V A    G G P++      ++  P       +     N
Sbjct: 58  NCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRN 117

Query: 193 -------------------FTATYTEDIKLPCLTVG-VPAPEIIWK------TYHIRIVA 226
                              +             T   V   E           Y  R+ A
Sbjct: 118 SVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSA 177

Query: 227 ENEIGSSEPSDTVTILTAEE 246
           +NE G S+P      + A++
Sbjct: 178 QNEKGISDPRQLSVPVIAKD 197

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score =  124 bits (313), Expect = 2e-32
 Identities = 35/181 (19%), Positives = 59/181 (32%), Gaps = 23/181 (12%)

Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWN 278
            Y + I A      S+ S T             P +++V +    +L + W         
Sbjct: 80  RYEVSISAVRGTNESDASSTQ-----FTTEIDAPKNLRVGSRTATSLDLEWDNS-----E 129

Query: 279 GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPG 338
              Q Y V Y   + ++      V   K  G     TL+ L   T+Y V + A+      
Sbjct: 130 AEAQEYKVVYSTLAGEQY---HEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQS 186

Query: 339 PMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
                +   T        P+D   T  +  +I + W        +G I  Y++ + PS  
Sbjct: 187 I-PATMNARTELD----SPRDLMVTASSETSISLIWTKA-----SGPIDHYRITFTPSSG 236

Query: 399 W 399
            
Sbjct: 237 I 237

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 97.2 bits (242), Expect = 1e-22
 Identities = 27/167 (16%), Positives = 50/167 (29%), Gaps = 24/167 (14%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GS   S     +         PT I V         V W+PP        +    + Y  
Sbjct: 1   GSPGISGGGGGIPV----IDGPTQILVRDVSDTVAFVEWTPP-----RAKVDFILLKYGL 51

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
              +       +            ++ +L+  ++Y V + A+        S      T  
Sbjct: 52  VGGEGGKTTFRLQ-----PPLSQYSVQALRPGSRYEVSISAVRGTNESDASS-----TQF 101

Query: 351 GTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
            T    P++    + T+ ++ + W +          + YKVVY    
Sbjct: 102 TTEIDAPKNLRVGSRTATSLDLEWDNSE-----AEAQEYKVVYSTLA 143

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 82.5 bits (204), Expect = 9e-18
 Identities = 36/243 (14%), Positives = 69/243 (28%), Gaps = 45/243 (18%)

Query: 133 KSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPS-----------KNVTLSPSN- 180
            + ++      Y    L+    Y   ++A     E   S           KN+ +     
Sbjct: 59  TTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSRTA 118

Query: 181 --------RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEII-------WKTYHIRIV 225
                      A    +   ++    E      +  G+                Y + I 
Sbjct: 119 TSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGIS 178

Query: 226 AENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYY 285
           A      S P+ T+   T        P  + V A+ + ++ + W+       +G I  Y 
Sbjct: 179 AVMNSKQSIPA-TMNART----ELDSPRDLMVTASSETSISLIWTKA-----SGPIDHYR 228

Query: 286 VGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVK 345
           + +  +S        TV            TL+ L+   +Y + + A         S  V 
Sbjct: 229 ITFTPSSGISS--EVTVP-----RDRTSYTLTDLEPGAEYIISITAERGRQQSLES-TVD 280

Query: 346 QYT 348
            +T
Sbjct: 281 AFT 283

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score =  122 bits (307), Expect = 3e-31
 Identities = 52/332 (15%), Positives = 104/332 (31%), Gaps = 24/332 (7%)

Query: 46  LLSSAPPEFEIKLRNQTSRRGEPSVLQCEAK-GEKPIGILWNMNNKRLDPKSDNRYTIRE 104
           L     P  E+     TS  G+   L C     E    + W +                 
Sbjct: 1   LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRW----- 55

Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTN 164
                G+   L ++  +  DS  ++C    +   +  +  +    + + +       S  
Sbjct: 56  ----AGMGRRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLVDVPPEEPQLSCFRKSPLSNV 111

Query: 165 IGEGQPSKNVTLSPSNRVPARIASFNDNFTATYT--EDIKLPCLTVGVPAPEIIWKTYHI 222
           + E  P    +L+    +  R    +             +    +  +  PE     Y +
Sbjct: 112 VCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIV 171

Query: 223 RIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQN--TLKVSWSPPERDHWNGV 280
            +   + +GS   S T T          PP +I V A  +N   L V+W  P   + +  
Sbjct: 172 SMCVASSVGSKF-SKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFY 230

Query: 281 IQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPM 340
              + + Y+   +     +   D       +HH  +    +  ++ V ++A  + G G  
Sbjct: 231 RLRFELRYRAERSKTFTTWMVKD------LQHHCVIHDAWSGLRHVVQLRAQEEFGQGEW 284

Query: 341 SE---EVKQYTAEGTPEQPPQDNTCTTLTSQT 369
           SE   E        +   P ++   T + + T
Sbjct: 285 SEWSPEAMGTPWTESRSPPAENEVSTPMQALT 316

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 53.7 bits (128), Expect = 6e-08
 Identities = 34/253 (13%), Positives = 72/253 (28%), Gaps = 36/253 (14%)

Query: 176 LSPSNRVPARIASFNDNFTATYTEDIKLPCLTV-GVPAPEIIWKTYHIRIVAENEIGSSE 234
           L+P  R PA+  +     T+   + + L C  V       + W          +    + 
Sbjct: 1   LAPR-RCPAQEVA-RGVLTSLPGDSVTLTCPGVEPEDNATVHWV-LRKPAAGSHPSRWAG 57

Query: 235 PSDTVTILTAEEAPSG-----------------------PPTHIKVEATDQNTLKVSWSP 271
               + + + +   SG                        P       +  + +   W P
Sbjct: 58  MGRRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEWGP 117

Query: 272 PERDHWNGVIQGYYVGYKETSTDKPFLF-ETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQ 330
                   +     +  ++        F E   +S+E  K            + Y V + 
Sbjct: 118 R---STPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMC 174

Query: 331 ALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTL--TSQTIRVSWVSPPLITANGVIKG 388
             + +G    S+             PP + T T +    + + V+W  P    ++     
Sbjct: 175 VASSVGSKF-SKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLR 233

Query: 389 YKVVYGP--SDTW 399
           +++ Y    S T+
Sbjct: 234 FELRYRAERSKTF 246

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  120 bits (303), Expect = 9e-31
 Identities = 56/343 (16%), Positives = 105/343 (30%), Gaps = 79/343 (23%)

Query: 49  SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
           +  P F+ +LRN   R    + L C+  G     + W    K +      +Y I+E    
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIA-DGLKYRIQEFKGG 60

Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
                 L I      D+ ++                                A+   G  
Sbjct: 61  YH---QLIIASVTDDDATVYQVR-----------------------------ATNQGGSV 88

Query: 169 QPSKNVTL-SPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--------T 219
             + ++ +  P+     +         A   E + +     G P P I W+         
Sbjct: 89  SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN 148

Query: 220 YHIRI-------------------------VAENEIGSSEPSDTVTILTAEEAPSGPPTH 254
            H ++                          A+N  G  + +  + +    + P  PP  
Sbjct: 149 GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA---DVP-DPPRG 204

Query: 255 IKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHL 314
           +KV    ++++ ++W+ P  D     I  Y V    T+ ++   +  V     + +E   
Sbjct: 205 VKVSDVSRDSVNLTWTEPASDG-GSKITNYIVEKCATTAER---WLRVG----QARETRY 256

Query: 315 TLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPP 357
           T+ +L   T Y   V A NK G    SE  +    +    +  
Sbjct: 257 TVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAM 299

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 36/266 (13%), Positives = 69/266 (25%), Gaps = 91/266 (34%)

Query: 192 NFTATYTEDIKLPCLTVGVPAPEIIWK-----------TYHIRI---------------- 224
           N    Y  +  L C   G P P + W             Y I+                 
Sbjct: 13  NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDD 72

Query: 225 -------VAENEIGSSEPSDTVTILTAE--------------EAPSGPPTHIKVEATDQN 263
                   A N+ GS   + ++ +                   A  G    IK+  + + 
Sbjct: 73  DATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKP 132

Query: 264 TLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYT 323
              ++W                   K        +     +     +     +       
Sbjct: 133 DPVITW------------------QKG---QDL-IDNNGHYQVIVTRSFTSLVFPNGVER 170

Query: 324 Q----YSVVVQALNKLGPGPMSEEVKQYTAE----GTPEQPPQDNTCTTLTSQTIRVSWV 375
           +    Y V  +  N+ G       + Q T E      P+ PP+    + ++  ++ ++W 
Sbjct: 171 KDAGFYVVCAK--NRFG-------IDQKTVELDVADVPD-PPRGVKVSDVSRDSVNLTW- 219

Query: 376 SPPLITANGVIKGYKVVY--GPSDTW 399
           + P       I  Y V      ++ W
Sbjct: 220 TEPASDGGSKITNYIVEKCATTAERW 245

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score =  113 bits (285), Expect = 3e-30
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 3/114 (2%)

Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
           +    P   P     +A ++ T+ + W      + N  I G+Y+ Y+ T +D    ++  
Sbjct: 3   SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKD 62

Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQP 356
                EG  +  ++S L+  T Y + +Q  N+ G    S  +   T   +    
Sbjct: 63  MV---EGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSGPSS 113

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 347 YTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTW 399
            +    P   P       +   TI + W+  P    N  I G+ + Y P+D+ 
Sbjct: 2   SSGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSD 54

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score =  112 bits (282), Expect = 5e-30
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
           +    PSG P ++ V     +T +++W PP     NG I  Y V +++ ++ +     T 
Sbjct: 3   SGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITT 62

Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT 348
                   +   TL+ LK  T Y + V+A    G GP+S  ++  T
Sbjct: 63  --------DTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 61.6 bits (150), Expect = 4e-12
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 347 YTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTW 399
            +    P   PQ+   T LT+ T  ++W  P L   NG I  Y VV+   ++ 
Sbjct: 2   SSGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQ 54

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score =  112 bits (283), Expect = 6e-30
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 10/128 (7%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S    I +A++APS  PT + V+    + + V W          +++ Y + Y  
Sbjct: 1   GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHV----LEKIVESYQIRYWA 56

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
               +    E  +  +   +E+   L +L   TQY + V A N  G GP S+ ++ +T +
Sbjct: 57  AHDKE----EAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKK 112

Query: 351 GTPEQPPQ 358
            +   P  
Sbjct: 113 ASG--PSS 118

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
           G    S      +A+  P + P +     L+S  I V W          +++ Y++ Y  
Sbjct: 1   GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVL----EKIVESYQIRYWA 56

Query: 396 SDTW 399
           +   
Sbjct: 57  AHDK 60

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score =  110 bits (277), Expect = 4e-29
 Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 5/124 (4%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNT-LKVSWSPPERDHWNGVIQGYYVGYK 289
           GSS  S  +   T E APS  P ++ V   + +  + + W  P     +G + GY + + 
Sbjct: 1   GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHV 60

Query: 290 ETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTA 349
             S             +         +S        +V + A+ + G GP S+ VK +  
Sbjct: 61  WQSAG----ISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIP 116

Query: 350 EGTP 353
             + 
Sbjct: 117 AHSG 120

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 68.3 bits (167), Expect = 3e-14
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCT-TLTSQTIRVSWVSPPLITANGVIKGYKVVYG 394
           G    S  +   T EG P   P + T     +S  + + W+ PP    +G + GY++ + 
Sbjct: 1   GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHV 60

Query: 395 PSDTWY 400
                 
Sbjct: 61  WQSAGI 66

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score =  113 bits (284), Expect = 5e-29
 Identities = 33/143 (23%), Positives = 48/143 (33%), Gaps = 13/143 (9%)

Query: 218 KTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHW 277
            TY +R+ A N  G  E S      T        P        D N++KV+      D  
Sbjct: 79  TTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQ--DDG 136

Query: 278 NGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGP 337
              I+ Y V Y+  S+      E     +      H+ L SL    +Y V V A N+ G 
Sbjct: 137 GSPIRHYLVRYRALSS------EWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGK 190

Query: 338 GPMSEEVKQYTAEGTPEQPPQDN 360
              +  V +     T       +
Sbjct: 191 SKAAHFVFR-----TAAAHHHHH 208

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 94.9 bits (236), Expect = 1e-22
 Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 9/158 (5%)

Query: 242 LTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGV-IQGYYVGYKETSTDKPFLFE 300
           L   + PS  P+  +VE    +T +V +  PE     GV I  Y   ++    +      
Sbjct: 3   LAQADTPS-SPSIDQVEPYS-STAQVQFDEPEAT--GGVPILKYKAEWRAVGEEVWH--S 56

Query: 301 TVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDN 360
               +KE   E  +T+  LK  T Y+V + ALN  G G +S   +  T        P+  
Sbjct: 57  KWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLE 116

Query: 361 TCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
                   +I+V+ +          I+ Y V Y    +
Sbjct: 117 GQMGEDGNSIKVNLIKQD--DGGSPIRHYLVRYRALSS 152

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 23/157 (14%), Positives = 43/157 (27%), Gaps = 32/157 (20%)

Query: 122 RGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNR 181
                ++  +    K +S +      GLK +  Y   + A    G G+ S          
Sbjct: 48  AVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPV 107

Query: 182 VPA------RIASFNDN------------------FTATYTEDIK--LPCLTVGVPAPEI 215
                         + N                  +   Y        P + +   +  +
Sbjct: 108 REPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHV 167

Query: 216 IWK------TYHIRIVAENEIGSSEPSDTVTILTAEE 246
           + K       Y + +VAEN+ G S+ +  V    A  
Sbjct: 168 MLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAAAH 204

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score =  120 bits (300), Expect = 9e-29
 Identities = 35/242 (14%), Positives = 66/242 (27%), Gaps = 31/242 (12%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATD-------QNTLKVSW 269
            + Y  R+ A N  G+   +       + + PS PP    +   +         T+ + W
Sbjct: 233 SRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVW 292

Query: 270 SPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE-EGKEHHLTLSSLKTYTQYSVV 328
             PE    +  +  Y V +    + K  +       K  +G ++ + L  L+    Y V 
Sbjct: 293 DLPE--EPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVE 350

Query: 329 VQALNKLGPGPMSEEVKQ--YTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVI 386
           +QA+   G   +        +T+        Q         QT        P        
Sbjct: 351 LQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPT------- 403

Query: 387 KGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGS 446
                              D    ++  W        +  +  Y V + P    +     
Sbjct: 404 --------RPLEVGAPFYQDGQLQVKVYWKKTE----DPTVNRYHVRWFPEACAHNRTTG 451

Query: 447 FR 448
             
Sbjct: 452 SE 453

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 97.7 bits (242), Expect = 1e-21
 Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 12/172 (6%)

Query: 235 PSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTD 294
            +  V     +  P  P   ++        L+V WS       +     Y V  +     
Sbjct: 147 HTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNI--SIEPVIYVVQRRWNYGI 204

Query: 295 KPFLFETVDFSK-EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
            P   +   +    +  +  + L+ ++    Y   V A+N  G    +   K + +   P
Sbjct: 205 HPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDP 264

Query: 354 EQPPQ-------DNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
             PP        ++T  +  S T+ + W  P     +  +  YKV +    +
Sbjct: 265 SAPPAPANLRLANSTVNSDGSVTVTIVWDLPE--EPDIPVHHYKVFWSWMVS 314

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 76.5 bits (187), Expect = 7e-15
 Identities = 36/337 (10%), Positives = 81/337 (24%), Gaps = 66/337 (19%)

Query: 115 LSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNV 174
           +         S + T + + +     Q +     L+   +Y+  + A T  G+ +     
Sbjct: 307 VFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLK--- 363

Query: 175 TLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSE 234
                                                A   +  T       + ++  + 
Sbjct: 364 ------------------------------------SAKVSLHFTSTHATNNKEQLVKTR 387

Query: 235 PSDTVTILTAEEAPSGPPTHIKVEATDQNTLK--VSWSPPERDHWNGVIQGYYVGYKETS 292
                T L  +      P  +         L+  V W   E    +  +  Y+V +   +
Sbjct: 388 KGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTE----DPTVNRYHVRWFPEA 443

Query: 293 TDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGT 352
                     + S     E+++ L  L    +Y V VQ +                    
Sbjct: 444 CAHNRT-TGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSA 502

Query: 353 PEQP-PQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDI 411
            +    +   C       +      P  ++A+ +++                  D+    
Sbjct: 503 LKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQ------------------DVNITG 544

Query: 412 RASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFR 448
             SW           + G++V +    T         
Sbjct: 545 HFSW-KMAKANLYQPMTGFQVTWAEVTTESRQNSLPN 580

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 73.5 bits (179), Expect = 7e-14
 Identities = 35/275 (12%), Positives = 74/275 (26%), Gaps = 52/275 (18%)

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
            +  ++   ++      +   T   ++    + +       L     Y   V        
Sbjct: 428 EDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSH 487

Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAE 227
            +       +P                         PC  +   + + I           
Sbjct: 488 SKAEAVFFTTP-------------------------PCSALKGKSHKPI----------- 511

Query: 228 NEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVG 287
                    +   +L+   A     +   +      T   SW   + +     + G+ V 
Sbjct: 512 -----GCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKAN-LYQPMTGFQVT 565

Query: 288 YKETSTDKPFLFETVDFSKE----EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEE 343
           + E +T+            +        + LT+ +L+  T Y + VQ L   G GP + +
Sbjct: 566 WAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIK 625

Query: 344 VKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPP 378
             +     TPE PP     + L  +     +   P
Sbjct: 626 TFR-----TPELPPSSAHRSHLKHRHPH-HYKPSP 654

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score =  105 bits (265), Expect = 2e-27
 Identities = 39/127 (30%), Positives = 54/127 (42%), Gaps = 13/127 (10%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S  V      + P  P  +++  A    ++ V+W  P     NG IQ Y + Y E
Sbjct: 1   GSSGSSGRVETQPEVQLPG-PAPNLRAYAASPTSITVTWETPVSG--NGEIQNYKLYYME 57

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
             TDK    +           H  T++ LK YT+YS  V A NK GPG  + +V   T  
Sbjct: 58  KGTDKEQDVDV--------SSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLS 109

Query: 351 GTPEQPP 357
            +   P 
Sbjct: 110 DSG--PS 114

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
           G    S  V+       P  P  +      +  +I V+W   P+ + NG I+ YK+ Y  
Sbjct: 1   GSSGSSGRVETQPEVQLPG-PAPNLRAYAASPTSITVTW-ETPV-SGNGEIQNYKLYYME 57

Query: 396 SDTW 399
             T 
Sbjct: 58  KGTD 61

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 7/68 (10%)

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
            NG + +  +   E+G         K Q +     +Y  +GLKK   Y F V A    G 
Sbjct: 44  GNGEIQNYKLYYMEKGTD-------KEQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGP 96

Query: 168 GQPSKNVT 175
           G  + +V 
Sbjct: 97  GVSTPDVA 104

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
           +  Y  R+VA N+ G    +  V + T  ++   P +
Sbjct: 81  YTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSG--PSS 115

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score =  104 bits (260), Expect = 8e-27
 Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 11/128 (8%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S    + T E+ P  P  H+        +LKVSW  P     NG++ GY + ++E
Sbjct: 1   GSSGSSGPQLVRTHEDVPG-PVGHLSFSEILDTSLKVSWQEPG--EKNGILTGYRISWEE 57

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
            +     +   +             ++ L   T Y++ V A+   G G +S       + 
Sbjct: 58  YNRTNTRVTHYLP-----NVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAST---ISS 109

Query: 351 GTPEQPPQ 358
           G P   P 
Sbjct: 110 GVPPSGPS 117

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
           G    S      T E  P  P    + + +   +++VSW   P    NG++ GY++ +  
Sbjct: 1   GSSGSSGPQLVRTHEDVPG-PVGHLSFSEILDTSLKVSW-QEPGEK-NGILTGYRISWEE 57

Query: 396 SD 397
            +
Sbjct: 58  YN 59

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
            NG+L+   I   E   +        +  + +  + Y  +GL     Y   V A T+ G+
Sbjct: 44  KNGILTGYRISWEEYNRTN----TRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQ 99

Query: 168 GQPSKNVTLS 177
           GQ S +   S
Sbjct: 100 GQVSASTISS 109

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score =  103 bits (259), Expect = 1e-26
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 12/123 (9%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S  + ++T    P   P + K E   + ++ +SW+PP     +  I  Y + YK+
Sbjct: 1   GSSGSSGDIQVITQTGVPG-QPLNFKAEPESETSILLSWTPPR----SDTIANYELVYKD 55

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
               +    + +             L  LK  + Y   + A +  G G  + E+   T +
Sbjct: 56  GEHGE---EQRITIEPGT----SYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQ 108

Query: 351 GTP 353
            + 
Sbjct: 109 SSG 111

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
           G    S +++  T  G P   P +      +  +I +SW  P     +  I  Y++VY  
Sbjct: 1   GSSGSSGDIQVITQTGVPG-QPLNFKAEPESETSILLSWTPPR----SDTIANYELVYKD 55

Query: 396 SDT 398
            + 
Sbjct: 56  GEH 58

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 6/68 (8%)

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
            +  +++  +   +           + +       +Y   GLK    Y F + A +  G 
Sbjct: 42  RSDTIANYELVYKDGEHGE------EQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGL 95

Query: 168 GQPSKNVT 175
           G  +  ++
Sbjct: 96  GASTAEIS 103

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score =  105 bits (264), Expect = 2e-26
 Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 20/174 (11%)

Query: 225 VAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGY 284
           +  +       S  V   +  E P   PT +       +++ + W+P      +  I GY
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMEVP--QPTDLSFVDITDSSIGLRWTPLN----SSTIIGY 54

Query: 285 YVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEV 344
            +         P   + VD         + T++ L+    Y + V  +   G    +   
Sbjct: 55  RITVVAAGEGIPIFEDFVD-----SSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTT-- 107

Query: 345 KQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
                + T   PP D   T +   T+RV+W  PP    +  +  + V Y P   
Sbjct: 108 ---LTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKN 154

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 89.1 bits (221), Expect = 1e-20
 Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 15/128 (11%)

Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWN 278
            Y I +      G S P+ T+T  T       PPT ++      +T++V+W+PP     +
Sbjct: 89  DYDISVYTVKNGGESTPT-TLTQQT----AVPPPTDLRFTNIGPDTMRVTWAPPP----S 139

Query: 279 GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPG 338
             +  + V Y     ++     ++        ++ + L++L   T+Y V V ++ +    
Sbjct: 140 IDLTNFLVRYSPVKNEEDVAELSIS-----PSDNAVVLTNLLPGTEYVVSVSSVYEQHES 194

Query: 339 -PMSEEVK 345
            P+    K
Sbjct: 195 TPLRGRQK 202

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102

 Score =  101 bits (254), Expect = 3e-26
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 3/102 (2%)

Query: 247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
            P   P     EA     + + W+     + N  IQG+Y+ Y+ T +D    ++      
Sbjct: 3   TPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVV-- 60

Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT 348
            EG +    +  L+  T Y + +Q  N+ G    S  +   T
Sbjct: 61  -EGSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 12/48 (25%), Positives = 20/48 (41%)

Query: 352 TPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTW 399
           TP   P       ++   I + W   P    N  I+G+ + Y P+D+ 
Sbjct: 3   TPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSD 50

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score =  102 bits (257), Expect = 3e-26
 Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 10/135 (7%)

Query: 224 IVAENEIGSSEPS-DTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQ 282
             +   IG   PS   +   T ++ P  PP  I        ++++ W PP     NG+I 
Sbjct: 3   SGSSGRIGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQPPAAP--NGIIL 59

Query: 283 GYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSE 342
            Y + ++  +T       T             T + LK  + Y   + A  + G G  +E
Sbjct: 60  AYQITHRLNTTTA----NTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAE 115

Query: 343 EVKQYTAEGTPEQPP 357
            +   T +     P 
Sbjct: 116 ALVVTTEK--RSGPS 128

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 329 VQALNKLGPG-PMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIK 387
             +  ++G G P    + + T +  P  PP       + + ++R+ W  PP    NG+I 
Sbjct: 3   SGSSGRIGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIW-QPPA-APNGIIL 59

Query: 388 GYKVVYGPSDT 398
            Y++ +  + T
Sbjct: 60  AYQITHRLNTT 70

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 50.5 bits (121), Expect = 7e-08
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
           PNG++    I       +A        + ++     Y A+GLK +  Y+F +TA T  G 
Sbjct: 54  PNGIILAYQITHRLNTTTAN---TATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGW 110

Query: 168 GQPSKNVTLSPSNRVP 183
           G+ ++ + ++   R  
Sbjct: 111 GEAAEALVVTTEKRSG 126

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score =  108 bits (271), Expect = 2e-25
 Identities = 27/178 (15%), Positives = 56/178 (31%), Gaps = 12/178 (6%)

Query: 236 SDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDK 295
           +           P   P ++         +++ W+PP+ D        Y V  ++   + 
Sbjct: 321 APQDPASMPCTRPPSAPHYLTAVGMG-AKVELRWTPPQ-DSGGREDIVYSVTCEQCWPES 378

Query: 296 PFLFETVDFSKEE-----GKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
                     +            +T+S L+ +  Y+  V+A N +     S   +  +  
Sbjct: 379 GECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVS 438

Query: 351 GTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP--SDTWYGDPKTD 406
                 P        ++ ++ VSW  PP       +  Y+V Y        Y   +T+
Sbjct: 439 INQ-TEPPKVRLEGRSTTSLSVSWSIPP--PQQSRVWKYEVTYRKKGDSNSYNVRRTE 493

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score =  108 bits (270), Expect = 3e-25
 Identities = 46/312 (14%), Positives = 82/312 (26%), Gaps = 44/312 (14%)

Query: 61  QTSRRGEPSVLQCEAKGE--KPIGILWNMNNKRLDPKSDNRYTIRE-EILPNGVLSDLSI 117
                GE   + C   GE   PIG             +    +    +   +        
Sbjct: 240 VVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECP 299

Query: 118 KRTERGDSALFTCEIKSQKISSQQMTYEASGLK---KKQNYIFYVTASTNIGEGQPSKNV 174
           + T        +CE +     + Q        +              +           V
Sbjct: 300 EHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAK----------V 349

Query: 175 TLS---PSN---------RVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEII------ 216
            L    P +          V                  ++      G+    +       
Sbjct: 350 ELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEP 409

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
              Y   + A N +     S +    +        P  +++E     +L VSWS P    
Sbjct: 410 HMNYTFTVEARNGVSGLVTSRSFRTASVSINQ-TEPPKVRLEGRSTTSLSVSWSIPPPQ- 467

Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
               +  Y V Y++         ++  ++    +   +TL  L   T Y V VQAL + G
Sbjct: 468 -QSRVWKYEVTYRKK-------GDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEG 519

Query: 337 PGPMSEEVKQYT 348
            G  S+  +  T
Sbjct: 520 QGAGSKVHEFQT 531

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 41.7 bits (97), Expect = 6e-04
 Identities = 19/143 (13%), Positives = 36/143 (25%), Gaps = 32/143 (22%)

Query: 138 SSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFN-DNFTAT 196
              + +   S L+   NY F V A   +     S++   +  +           +  + T
Sbjct: 396 GLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTT 455

Query: 197 ----------------------YTEDIKLPCLTV-GVPAPEII------WKTYHIRIVAE 227
                                 Y +        V       +         TY +++ A 
Sbjct: 456 SLSVSWSIPPPQQSRVWKYEVTYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQAL 515

Query: 228 NEIGSSEPSDTVTILTAEEAPSG 250
            + G    S      T   +P G
Sbjct: 516 TQEGQGAGSKVHEFQTL--SPEG 536

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 98.5 bits (246), Expect = 4e-25
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 12/115 (10%)

Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
           ++  +  GP  +++  +T   ++ ++W PP     NG +QGY +   E ST K    E  
Sbjct: 2   SSGSSGPGPVENLQAVSTSPTSILITWEPPAYA--NGPVQGYRLFCTEVSTGKEQNIEV- 58

Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPP 357
                        L  LK +T+YS+   A N+ GPG  ++++   T   +   P 
Sbjct: 59  -------DGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSG--PS 104

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTW 399
           +    P  P ++    + +  +I ++W  PP   ANG ++GY++      T 
Sbjct: 3   SGSSGPG-PVENLQAVSTSPTSILITW-EPPA-YANGPVQGYRLFCTEVSTG 51

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 7/68 (10%)

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
            NG +    +  TE           K Q I    ++Y+  GLKK   Y     A    G 
Sbjct: 34  ANGPVQGYRLFCTEVSTG-------KEQNIEVDGLSYKLEGLKKFTEYSLRFLAYNRYGP 86

Query: 168 GQPSKNVT 175
           G  + ++T
Sbjct: 87  GVSTDDIT 94

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
           +  Y +R +A N  G    +D +T++T  +  SGP +
Sbjct: 71  FTEYSLRFLAYNRYGPGVSTDDITVVTLSD--SGPSS 105

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 96.7 bits (241), Expect = 4e-24
 Identities = 30/126 (23%), Positives = 44/126 (34%), Gaps = 7/126 (5%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S      T    PS  P  +         +K++W  P  D  +G    Y V Y +
Sbjct: 1   GSSGSSGEHAPATTGPLPS-APRDVVASLVSTRFIKLTWRTPASDP-HGDNLTYSVFYTK 58

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
               +  +  T         E  +T+ +L   T Y   V A NK G G  S  ++  T  
Sbjct: 59  EGIARERVENTSH-----PGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQP 113

Query: 351 GTPEQP 356
            +    
Sbjct: 114 ESGPSS 119

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
           G    S E    T    P   P+D   + ++++ I+++W   P    +G    Y V Y  
Sbjct: 1   GSSGSSGEHAPATTGPLP-SAPRDVVASLVSTRFIKLTW-RTPASDPHGDNLTYSVFYTK 58

Query: 396 SDTW 399
               
Sbjct: 59  EGIA 62

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 47.0 bits (112), Expect = 9e-07
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 218 KTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGP 251
             Y  R++A+N+ GS E S  + + T  E+    
Sbjct: 86  TVYIFRVMAQNKHGSGESSAPLRVETQPESGPSS 119

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 4/76 (5%)

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
           P+G     S+  T+ G +     E         +M      L     YIF V A    G 
Sbjct: 45  PHGDNLTYSVFYTKEGIAR----ERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGS 100

Query: 168 GQPSKNVTLSPSNRVP 183
           G+ S  + +       
Sbjct: 101 GESSAPLRVETQPESG 116

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 96.4 bits (240), Expect = 4e-24
 Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 11/124 (8%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S TV + T +  PS PP ++   ATD   + ++W   +       + GY V Y+ 
Sbjct: 1   GSSGSSGTVNVTTKKTPPSQPPGNVVWNATD-TKVLLNWEQVKAMENESEVTGYKVFYRT 59

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVK-QYTA 349
           +S +   +  T                 L     Y + V+A    G G  SE+++     
Sbjct: 60  SSQNNVQVLNT---------NKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRIT 110

Query: 350 EGTP 353
              P
Sbjct: 111 SSGP 114

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 65.6 bits (160), Expect = 3e-13
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
           G    S  V   T +  P QPP  N     T   + ++W     +     + GYKV Y  
Sbjct: 1   GSSGSSGTVNVTTKKTPPSQPPG-NVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRT 59

Query: 396 SD 397
           S 
Sbjct: 60  SS 61

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 96.8 bits (241), Expect = 4e-24
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 16/132 (12%)

Query: 228 NEIGSSEPSDTVTILTAE-----EAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQ 282
           +   S   +D ++  T E           P+ + V      ++ VSW+PPE  + N V++
Sbjct: 2   SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLV-TSIVVSWTPPE--NQNIVVR 58

Query: 283 GYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPG-PMS 341
           GY +GY   S             K + K+ + T+ +L   + Y + ++A N +G G P+ 
Sbjct: 59  GYAIGYGIGSPH-------AQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLY 111

Query: 342 EEVKQYTAEGTP 353
           E          P
Sbjct: 112 ESAVTRPHTSGP 123

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 8/72 (11%)

Query: 333 NKLGPGPMSEEVKQYTAEGTPEQ-----PPQDNTCTTLTSQTIRVSWVSPPLITANGVIK 387
           +    GP ++ +   T E   ++      P           +I VSW +PP    N V++
Sbjct: 2   SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRP-LVTSIVVSW-TPPE-NQNIVVR 58

Query: 388 GYKVVYGPSDTW 399
           GY + YG     
Sbjct: 59  GYAIGYGIGSPH 70

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 133 KSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP-SKNVTLSPSNRVPA 184
           ++ K+  +Q  Y    L    +Y+  + A  N+GEG P  ++    P    P+
Sbjct: 72  QTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTSGPS 124

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 96.3 bits (240), Expect = 5e-24
 Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 11/128 (8%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S    I ++   PS  P  +         +++SW PP      G IQ + V +  
Sbjct: 1   GSSGSSGKPAIPSSSVLPS-APRDVVPVLVSSRFVRLSWRPPAEA--KGNIQTFTVFFSR 57

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
              ++     T            LT+ +LK    Y+  V A N+ GPG  S+ +K  T  
Sbjct: 58  EGDNRERALNTTQ-----PGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVAT-- 110

Query: 351 GTPEQPPQ 358
             PE  P 
Sbjct: 111 -QPESGPS 117

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
           G    S +    ++   P   P+D     ++S+ +R+SW  PP   A G I+ + V +
Sbjct: 1   GSSGSSGKPAIPSSSVLPS-APRDVVPVLVSSRFVRLSW-RPPA-EAKGNIQTFTVFF 55

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 4/68 (5%)

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
             G +   ++  +  GD+     E          +      LK +  Y F V A    G 
Sbjct: 44  AKGNIQTFTVFFSREGDNR----ERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGP 99

Query: 168 GQPSKNVT 175
           G+ S+ + 
Sbjct: 100 GESSQPIK 107

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAP 248
              Y  R+VA NE G  E S  + + T  E+ 
Sbjct: 84  EAMYTFRVVAYNEWGPGESSQPIKVATQPESG 115

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 94.8 bits (236), Expect = 1e-23
 Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 7/113 (6%)

Query: 243 TAEEAPSGPPTHIKVEATDQN--TLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFE 300
           +    P+  P  + V   +     + VSW PP     NG I  Y + Y          + 
Sbjct: 3   SGSSGPTSAPKDLTVITREGKPRAVIVSWQPPL--EANGKITAYILFYTLDKNIPIDDWI 60

Query: 301 TVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
               S   G      +  L   T Y   +QA N  G GP+S+ +   T + + 
Sbjct: 61  METIS---GDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSG 110

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 15/66 (22%), Positives = 20/66 (30%), Gaps = 4/66 (6%)

Query: 347 YTAEGTPEQPPQDNT--CTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPK 404
            +    P   P+D T        + + VSW  P    ANG I  Y + Y        D  
Sbjct: 2   SSGSSGPTSAPKDLTVITREGKPRAVIVSWQPPL--EANGKITAYILFYTLDKNIPIDDW 59

Query: 405 TDICTD 410
                 
Sbjct: 60  IMETIS 65

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
            NG ++   +  T   +  +   +   + IS  ++T++   L     Y F + A  + G 
Sbjct: 37  ANGKITAYILFYTLDKNIPID--DWIMETISGDRLTHQIMDLNLDTMYYFRIQARNSKGV 94

Query: 168 GQPSKNVT 175
           G  S  + 
Sbjct: 95  GPLSDPIL 102

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
              Y+ RI A N  G    SD +   T + +   P +
Sbjct: 79  DTMYYFRIQARNSKGVGPLSDPILFRTLKVSG--PSS 113

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score =  103 bits (258), Expect = 2e-23
 Identities = 53/379 (13%), Positives = 106/379 (27%), Gaps = 45/379 (11%)

Query: 59  RNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIK 118
            +Q S   E             I + W       D +    + +  +  P   +++   +
Sbjct: 463 GDQASCENELLKFSYIRTSFDKILLRWEPYWP-PDFRDLLGFMLFYKEAPYQNVTEFDGQ 521

Query: 119 RTERGDS----ALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE-----GQ 169
                +S     +      +   S     +   GLK    Y  +V       +     G 
Sbjct: 522 DACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGA 581

Query: 170 PSKNVTL-------SPSNRVPARIASF-------------NDNFTA------TYTEDIKL 203
            S  + +       S      +   S              N N T          ED +L
Sbjct: 582 KSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSEL 641

Query: 204 PCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQN 263
             L   +   ++  +T+     +E+    ++     +       P      +K    +++
Sbjct: 642 FELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILK--ELEES 699

Query: 264 TLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYT 323
           + + ++     +                  +     E   F K    +  L +S L+ +T
Sbjct: 700 SFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKV-VNKESLVISGLRHFT 758

Query: 324 QYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQP----PQDNTCTTLTSQTIRVSWVSPPL 379
            Y + +QA N+  P          +A   PE          T     +  + + W  P  
Sbjct: 759 GYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPK- 817

Query: 380 ITANGVIKGYKVVYGPSDT 398
              NG+I  Y+V Y     
Sbjct: 818 -EPNGLIVLYEVSYRRYGD 835

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 95.0 bits (235), Expect = 1e-20
 Identities = 46/373 (12%), Positives = 93/373 (24%), Gaps = 47/373 (12%)

Query: 58  LRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIRE---EILPNGVLSD 114
            R     RGE   +            L N N ++L   S +  TI +       N  L  
Sbjct: 382 FRKLRLIRGETLEIG-----NYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCL 436

Query: 115 LSIKRTE-------RGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
             I + E       R +      +    + S +    + S ++   + I          +
Sbjct: 437 SEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPD 496

Query: 168 GQPS-------KNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEII---- 216
            +         K            + A  ++++T    +             P  +    
Sbjct: 497 FRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGL 556

Query: 217 --WKTYHIRIVAENEIGSSE-----PSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSW 269
             W  Y I +                SD + + T    PS  P      +   + + + W
Sbjct: 557 KPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPS-VPLDPISVSNSSSQIILKW 615

Query: 270 SPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVV 329
            PP     NG I  Y V ++  + D                  +           +S   
Sbjct: 616 KPPS--DPNGNITHYLVFWERQAEDSELFE-----------LDYCLKGLKLPSRTWSPPF 662

Query: 330 QALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGY 389
           ++ +         E         P+   Q       +S           ++      +  
Sbjct: 663 ESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKR 722

Query: 390 KVVYGPSDTWYGD 402
           + +    +    +
Sbjct: 723 RSLGDVGNAGNNE 735

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 95.0 bits (235), Expect = 2e-20
 Identities = 41/287 (14%), Positives = 72/287 (25%), Gaps = 57/287 (19%)

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
           PNG ++   +    + + +         K                  +     +  +   
Sbjct: 621 PNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRT----------WSPPFESEDSQKH 670

Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--------- 218
            Q     +       P   +        +         L   V  P    K         
Sbjct: 671 NQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGN 730

Query: 219 ----------------------------TYHIRIVAENEIGSSEPSDTVTILTA----EE 246
                                        Y I + A N+    E       ++A    E 
Sbjct: 731 AGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEA 790

Query: 247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
                   +  E  + N + + W  P+    NG+I  Y V Y+    ++  L +T    K
Sbjct: 791 KADDIVGPVTHEIFENNVVHLMWQEPK--EPNGLIVLYEVSYRRYGDEELHLCDTR---K 845

Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
               E    L  L     YSV ++A +  G G  +E    Y  +   
Sbjct: 846 HFALERGCRLRGLS-PGNYSVRIRATSLAGNGSWTEPTYFYVTDYLD 891

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 48.8 bits (115), Expect = 4e-06
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
           PNG++    +     GD  L  C+  ++K  + +      GL    NY   + A++  G 
Sbjct: 819 PNGLIVLYEVSYRRYGDEELHLCD--TRKHFALERGCRLRGLSPG-NYSVRIRATSLAGN 875

Query: 168 GQPSKNVTL--SPSNRVPARIA 187
           G  ++      +    VP+ IA
Sbjct: 876 GSWTEPTYFYVTDYLDVPSNIA 897

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 91.7 bits (228), Expect = 2e-22
 Identities = 30/128 (23%), Positives = 44/128 (34%), Gaps = 11/128 (8%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S +         P   PT +   A    +L+VSW  P        +QGY V Y+ 
Sbjct: 1   GSSGSSGSHDSRLTAGVP-DTPTRLVFSALGPTSLRVSWQEPRC---ERPLQGYSVEYQL 56

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
            +       E    +     +  + +  L     Y   V+A ++ G G   E V   T E
Sbjct: 57  LNGG-----ELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGV--ITIE 109

Query: 351 GTPEQPPQ 358
                P  
Sbjct: 110 SQVSGPSS 117

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 4/63 (6%)

Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
           G    S         G P+  P     + L   ++RVSW   P       ++GY V Y  
Sbjct: 1   GSSGSSGSHDSRLTAGVPD-TPTRLVFSALGPTSLRVSW-QEPR--CERPLQGYSVEYQL 56

Query: 396 SDT 398
            + 
Sbjct: 57  LNG 59

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
             +Y  R+ A+++ G     + V   T E   SGP +
Sbjct: 83  NHSYVFRVRAQSQEGWGREREGVI--TIESQVSGPSS 117

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 4/69 (5%)

Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIG 166
                L   S++        L    I +      Q +     L    +Y+F V A +  G
Sbjct: 42  RCERPLQGYSVEYQLLNGGELHRLNIPN----PAQTSVVVEDLLPNHSYVFRVRAQSQEG 97

Query: 167 EGQPSKNVT 175
            G+  + V 
Sbjct: 98  WGREREGVI 106

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 89.8 bits (223), Expect = 7e-22
 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 12/125 (9%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S     L   + P   P+ + V     N + +SW+PP     N V++GY +GY  
Sbjct: 1   GSSGSSGPENDLDESQVP-DQPSSLHVRPQT-NCIIMSWTPPLNP--NIVVRGYIIGYGV 56

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPG-PMSEEVKQYTA 349
            S          +  + + K+ + ++  L++ + Y + ++A N  G G P+ E     + 
Sbjct: 57  GSPY-------AETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTRSI 109

Query: 350 EGTPE 354
              P 
Sbjct: 110 TSGPS 114

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP 395
           G    S           P+QP   +      +  I +SW +PPL   N V++GY + YG 
Sbjct: 1   GSSGSSGPENDLDESQVPDQPS--SLHVRPQTNCIIMSW-TPPL-NPNIVVRGYIIGYGV 56

Query: 396 SDT 398
              
Sbjct: 57  GSP 59

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 12/53 (22%), Positives = 22/53 (41%)

Query: 131 EIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVP 183
             ++ ++ S+Q  Y    L+   +Y+  + A  N GEG P      + S    
Sbjct: 60  YAETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTRSITSG 112

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 89.3 bits (222), Expect = 1e-21
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 11/119 (9%)

Query: 239 VTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFL 298
            +  + + APS     I+ E   Q ++ + W  PE+   NG+I  Y + Y E   +    
Sbjct: 2   SSGSSGQAAPS-QVVVIRQERAGQTSVSLLWQEPEQP--NGIILEYEIKYYEKDKEMQ-- 56

Query: 299 FETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPP 357
                +S  +      T+S LK  T+Y   V+A    G G  S+ ++  T +  P  P 
Sbjct: 57  ----SYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGK--PSGPS 109

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 8/75 (10%)

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
           PNG++ +  IK  E+              + +       SGLK    Y+F V A T+ G 
Sbjct: 37  PNGIILEYEIKYYEKDKE-----MQSYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGC 91

Query: 168 GQPSKNV---TLSPS 179
           G+ S+ +   T  PS
Sbjct: 92  GRFSQAMEVETGKPS 106

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 3/59 (5%)

Query: 347 YTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKT 405
            + +  P               ++ + W   P    NG+I  Y++ Y   D       T
Sbjct: 5   SSGQAAP-SQVVVIRQERAGQTSVSLLW-QEPE-QPNGIILEYEIKYYEKDKEMQSYST 60

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 89.0 bits (221), Expect = 1e-21
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 13/116 (11%)

Query: 243 TAEEAPSGPPT-HIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFET 301
           +    P  P    + +    +  +   W+PP   H +G+I+ Y V Y  + +        
Sbjct: 3   SGSSGPDAPRNLQLSLPREAEGVIVGHWAPPI--HTHGLIREYIVEYSRSGSK------- 53

Query: 302 VDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPP 357
             ++ +    +   + +L   T Y+V V A+   G G  S+     T +G+   P 
Sbjct: 54  -MWASQRAASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSG--PS 106

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 347 YTAEGTPEQPPQDN-TCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYG--PSDTW 399
            +    P+ P     +        I   W +PP+   +G+I+ Y V Y    S  W
Sbjct: 2   SSGSSGPDAPRNLQLSLPREAEGVIVGHW-APPI-HTHGLIREYIVEYSRSGSKMW 55

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 87.6 bits (217), Expect = 6e-21
 Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 8/125 (6%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPP--ERDHWNGVIQGYYVGY 288
           GSS  S   T +     P  PP  ++  A   + ++VSW+     ++     ++ Y V +
Sbjct: 1   GSSGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRW 60

Query: 289 KETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT 348
           + + +              +      T + LK  T Y   V           S      T
Sbjct: 61  RTSFSASAKYKSE------DTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATT 114

Query: 349 AEGTP 353
            E + 
Sbjct: 115 YEASG 119

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 2/77 (2%)

Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITA--NGVIKGYKVVY 393
           G    S          TP  PP       LT   +RVSW    +        ++ Y V +
Sbjct: 1   GSSGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRW 60

Query: 394 GPSDTWYGDPKTDICTD 410
             S +     K++  T 
Sbjct: 61  RTSFSASAKYKSEDTTS 77

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 38.7 bits (90), Expect = 7e-04
 Identities = 27/142 (19%), Positives = 42/142 (29%), Gaps = 22/142 (15%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILW--NMNNKRLDPKSDNRYTIREE 105
           SS    F   + + ++    P  +Q  A     + + W  N   K         YT+R  
Sbjct: 2   SSGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVR-- 59

Query: 106 ILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNI 165
                        RT    SA      K +   +  ++Y A+GLK    Y F V  + N 
Sbjct: 60  ------------WRTSFSASA------KYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNR 101

Query: 166 GEGQPSKNVTLSPSNRVPARIA 187
                S     +          
Sbjct: 102 RSSTWSMTAHATTYEASGPSSG 123

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 85.6 bits (212), Expect = 2e-20
 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 11/115 (9%)

Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
           +    P    + I+V  +  ++L ++W+ P     +G +  Y V Y E   + P     +
Sbjct: 3   SGSSGPP-AVSDIRVTRSSPSSLSLAWAVPRAP--SGAVLDYEVKYHEKGAEGPSSVRFL 59

Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPP 357
                   E+   L  LK    Y V V+A ++ G GP  +E    T     +  P
Sbjct: 60  K-----TSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQT---QLDSGP 106

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTW 399
           +    P     D   T  +  ++ ++W  P     +G +  Y+V Y      
Sbjct: 3   SGSSGP-PAVSDIRVTRSSPSSLSLAWAVPR--APSGAVLDYEVKYHEKGAE 51

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score = 90.7 bits (224), Expect = 3e-20
 Identities = 45/313 (14%), Positives = 101/313 (32%), Gaps = 26/313 (8%)

Query: 52  PEFEIKLRNQTSRRGEPSVLQCEAK-------GEKPIGILWNMNNKRLDPKSDNRYTIRE 104
           P   I   +   +        C  K             I+W  N+  +      +YTI  
Sbjct: 5   PCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPK---EQYTIIN 61

Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTN 164
               +   +D++        +       + ++             +K +N    V     
Sbjct: 62  RTASSVTFTDIA--SLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKK 119

Query: 165 IG-EGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIR 223
           +  E    +   L  +  + +    +  +  A        P  +  V    + +    + 
Sbjct: 120 MRCEWDGGRETHLETNFTLKSE---WATHKFADCKAKRDTPT-SCTVDYSTVYFVNIEVW 175

Query: 224 IVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATD--QNTLKVSWSPPERDHWNGVI 281
           + AEN +G    SD +      +    PP ++ V  ++   + LK++W+ P     + +I
Sbjct: 176 VEAENALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPS--IKSVII 232

Query: 282 QGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMS 341
             Y + Y+         +  +            T+  LK +T+Y   ++ + + G G  S
Sbjct: 233 LKYNIQYRTKDAST---WSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWS 289

Query: 342 EEVKQYTAEGTPE 354
           +  ++ +   T E
Sbjct: 290 DWSEEASGI-TYE 301

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score = 47.5 bits (112), Expect = 5e-06
 Identities = 25/185 (13%), Positives = 58/185 (31%), Gaps = 19/185 (10%)

Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWN 278
                I+   ++  +    T+        P   P ++     +   ++  W      H  
Sbjct: 78  QLTCNILTFGQLEQNVYGITIISGL----PPEKPKNLSCIVNEGKKMRCEWDGGRETH-- 131

Query: 279 GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTL-SSLKTYTQYSVVVQALNKLGP 337
            +   + +  +  +       +  D   +       T+  S   +    V V+A N LG 
Sbjct: 132 -LETNFTLKSEWATH------KFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGK 184

Query: 338 GPMSEEVKQYTAEGTPEQPPQDN-TCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP- 395
                       +  P  P   +   +   S  ++++W +P +   + +I  Y + Y   
Sbjct: 185 VTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSI--KSVIILKYNIQYRTK 242

Query: 396 -SDTW 399
            + TW
Sbjct: 243 DASTW 247

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 84.8 bits (210), Expect = 4e-20
 Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 9/112 (8%)

Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
           +    PS  P  +   +    ++ +SW  PE+   NG+I  Y + Y E   ++       
Sbjct: 3   SGSSGPSTVPI-MHQVSATMRSITLSWPQPEQP--NGIILDYEIRYYEKEHNEFN----- 54

Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPE 354
             S    + +   +  L+    Y V V+A    G G  S ++   T   +  
Sbjct: 55  -SSMARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSGP 105

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
           +    P   P      + T ++I +SW  P     NG+I  Y++ Y   + 
Sbjct: 3   SGSSGPSTVP-IMHQVSATMRSITLSWPQPE--QPNGIILDYEIRYYEKEH 50

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 8/75 (10%)

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
           PNG++ D  I+  E+  +     E  S    SQ  T    GL+    Y+  V A T  G 
Sbjct: 34  PNGIILDYEIRYYEKEHN-----EFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVAGY 88

Query: 168 GQPSKNV---TLSPS 179
           G+ S  +   TL+ S
Sbjct: 89  GKFSGKMCFQTLTDS 103

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 83.3 bits (206), Expect = 1e-19
 Identities = 16/116 (13%), Positives = 31/116 (26%), Gaps = 8/116 (6%)

Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPP--ERDHWNGVIQGYYVGYKETSTDKPFLFE 300
           +    P  PP  ++      +T++++W+     +       + Y V +K           
Sbjct: 3   SGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKN 62

Query: 301 TVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQP 356
                          ++ LK  T Y   V           S      T E +    
Sbjct: 63  A------NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGPSS 112

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 47.1 bits (112), Expect = 8e-07
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 347 YTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGV--IKGYKVVYGPSDT 398
            +    P  PP     + L+  TIR++W    L     +   + Y V +  +  
Sbjct: 2   SSGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIP 55

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 85.6 bits (212), Expect = 2e-19
 Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 23/156 (14%)

Query: 242 LTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFET 301
           + A       P  ++V    + TL + W  P           Y + Y   S  K  +   
Sbjct: 1   INAGTDLD-NPKDLEVSDPTETTLSLRWRRPV-----AKFDRYRLTYVSPSGKKNEMEIP 54

Query: 302 VDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNT 361
           VD            L  L   T+Y++ + A         +          T    P+  +
Sbjct: 55  VD-------STSFILRGLDAGTEYTISLVAEKGRHKSKPTT-----IKGSTVVGSPKGIS 102

Query: 362 CTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
            + +T  +  VSW  P        +  Y+V Y P  
Sbjct: 103 FSDITENSATVSWTPPR-----SRVDSYRVSYVPIT 133

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 79.8 bits (197), Expect = 1e-17
 Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 17/130 (13%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
              Y I +VAE     S+P+             G P  I      +N+  VSW+PP    
Sbjct: 68  GTEYTISLVAEKGRHKSKPTTIKG-----STVVGSPKGISFSDITENSATVSWTPP---- 118

Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
               +  Y V Y   +   P +         +G +    L  L     Y+V + ++    
Sbjct: 119 -RSRVDSYRVSYVPITGGTPNVVTV------DGSKTRTKLVKLVPGVDYNVNIISVKGFE 171

Query: 337 PG-PMSEEVK 345
              P+S  +K
Sbjct: 172 ESEPISGILK 181

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score = 82.8 bits (205), Expect = 3e-19
 Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S T++     E P GPPT++ +      ++ + + P   D     I  + V  + 
Sbjct: 1   GSSGSSGTISSGVPPELP-GPPTNLGISNIGPRSVTLQFRPGY-DG-KTSISRWLVEAQV 57

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
               +   +  +     E     + +  L  +T YS  ++ +N +G  P S+  ++    
Sbjct: 58  GVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQ-- 115

Query: 351 GTPEQPP 357
            T +  P
Sbjct: 116 -TLQSGP 121

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 217 WKTYHIRIVAENEIGSSEPSD-TVTILTAEEAPS 249
           +  Y  R+   N +G+S PS  +  I T +  PS
Sbjct: 89  FTCYSFRMRQVNIVGTSPPSQPSRKIQTLQSGPS 122

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 85.4 bits (211), Expect = 3e-19
 Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 11/153 (7%)

Query: 210 VPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATD--QNTLKV 267
           V    + +    + + AEN +G    SD +      +    PP ++ V  ++   + LK+
Sbjct: 66  VDYSTVYFVNIEVWVEAENALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKL 124

Query: 268 SWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSV 327
           +W+ P     + +I  Y + Y+         +  +            T+  LK +T+Y  
Sbjct: 125 TWTNPS--IKSVIILKYNIQYRTKDAST---WSQIPPEDTASTRSSFTVQDLKPFTEYVF 179

Query: 328 VVQALNKLGPGPMSE---EVKQYTAEGTPEQPP 357
            ++ + + G G  S+   E    T E  P + P
Sbjct: 180 RIRCMKEDGKGYWSDWSEEASGITYEDRPSKEP 212

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 22/156 (14%), Positives = 50/156 (32%), Gaps = 15/156 (9%)

Query: 248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE 307
           P   P ++     +   ++  W          +   + +  +  +       +  D   +
Sbjct: 7   PPEKPKNLSCIVNEGKKMRCEWDGG---RETHLETNFTLKSEWATH------KFADCKAK 57

Query: 308 EGKEHHLTL-SSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDN-TCTTL 365
                  T+  S   +    V V+A N LG             +  P  P   +   +  
Sbjct: 58  RDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEE 117

Query: 366 TSQTIRVSWVSPPLITANGVIKGYKVVYGP--SDTW 399
            S  ++++W +P +   + +I  Y + Y    + TW
Sbjct: 118 LSSILKLTWTNPSI--KSVIILKYNIQYRTKDASTW 151

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 40.0 bits (93), Expect = 7e-04
 Identities = 30/227 (13%), Positives = 59/227 (25%), Gaps = 61/227 (26%)

Query: 66  GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDS 125
            +P  L C     K +   W+      +   +  +T++ E   +                
Sbjct: 9   EKPKNLSCIVNEGKKMRCEWDGGR---ETHLETNFTLKSEWATH---------------- 49

Query: 126 ALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG---------------QP 170
                     K  +              N   +V A   +G+                 P
Sbjct: 50  ---KFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNP 106

Query: 171 SKNVTLSPSNRVPARIA------SFNDNFTATY---------TEDIKLPCLTVGVPAPEI 215
             N+++  S  + + +       S        Y         +   ++P           
Sbjct: 107 PHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSF 166

Query: 216 I------WKTYHIRIVAENEIGS---SEPSDTVTILTAEEAPSGPPT 253
                  +  Y  RI    E G    S+ S+  + +T E+ PS  P+
Sbjct: 167 TVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPS 213

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 80.6 bits (199), Expect = 9e-19
 Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 245 EEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDF 304
             + S  PT ++V      +LK+SW           ++ Y + Y ET  D P    TV  
Sbjct: 4   GSSVSSVPTKLEVVDATPTSLKISWDAYYSS--WQNVKYYRITYGETGGDSPVQEFTVP- 60

Query: 305 SKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEV 344
               G     T+S LK    Y++ V A +   PG      
Sbjct: 61  ----GYYSTATISGLKPGVDYTITVYAYDTFFPGYEPNSP 96

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 350 EGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
             +    P        T  ++++SW +    ++   +K Y++ YG +  
Sbjct: 4   GSSVSSVPTKLEVVDATPTSLKISWDAYY--SSWQNVKYYRITYGETGG 50

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 86.0 bits (212), Expect = 5e-18
 Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 8/139 (5%)

Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
             + Y+  + A N +G S+ +  V     E+     PT  KV+  +   +K+SW  P   
Sbjct: 351 NQEIYNFTLNAHNPLGRSQSTILVN--ITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNF 408

Query: 276 HWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQA--LN 333
                +    +    +  ++      V     E   + + L  L  YT Y+  ++     
Sbjct: 409 AKINFLCEIEIKKSNSVQEQ----RNVTIQGVENSSYLVALDKLNPYTLYTFRIRCSTET 464

Query: 334 KLGPGPMSEEVKQYTAEGT 352
                  S + +  T E +
Sbjct: 465 FWKWSKWSNKKQHLTTEAS 483

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 83.4 bits (205), Expect = 3e-17
 Identities = 50/316 (15%), Positives = 87/316 (27%), Gaps = 26/316 (8%)

Query: 95  KSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQN 154
           + ++   ++       +    ++            C I   +I         SGL++  +
Sbjct: 127 RKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSD 186

Query: 155 YIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIK-LPCLTVGVPAP 213
           +      S       P     + P ++V         + T       K L  L      P
Sbjct: 187 WSPVKQIS-----WIPDSQTKVFPQDKV----ILVGSDITFCCVSQEKVLSALIGHTNCP 237

Query: 214 EIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEA----------PSGPPTHIKVEATDQN 263
            I     ++ I   N I  S  S T  + T E+           P   P  +  E  D  
Sbjct: 238 LIHLDGENVAIKIRN-ISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNCETHDLK 296

Query: 264 TLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYT 323
            +  SW+P       G     Y   +  S     L           + + L    L    
Sbjct: 297 EIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEA---PTNESYQLLFQMLPNQE 353

Query: 324 QYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITAN 383
            Y+  + A N LG    +  V     E      P       + S  +++SW  P      
Sbjct: 354 IYNFTLNAHNPLGRSQSTILVN--ITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKI 411

Query: 384 GVIKGYKVVYGPSDTW 399
             +   ++    S   
Sbjct: 412 NFLCEIEIKKSNSVQE 427

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 59.1 bits (142), Expect = 2e-09
 Identities = 29/183 (15%), Positives = 55/183 (30%), Gaps = 14/183 (7%)

Query: 194 TATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
                  IK+P L+ G          Y I I + ++ GSS    T+        P   P 
Sbjct: 40  YQLEKTSIKIPALSHG---------DYEITINSLHDFGSSTSKFTLNEQNVSLIPD-TPE 89

Query: 254 HIKVEA-TDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDF-SKEEGKE 311
            +++ A    +TL + W+       +     + +      + +     T       +   
Sbjct: 90  ILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTL 149

Query: 312 HHLTLSSLKTY--TQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQT 369
           HH + +S        + V ++           EE   ++        P   T      + 
Sbjct: 150 HHWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKV 209

Query: 370 IRV 372
           I V
Sbjct: 210 ILV 212

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 80.5 bits (198), Expect = 1e-17
 Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 29/165 (17%)

Query: 249 SGP-PTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE 307
           SGP    I    +  N+  + W+ P+       I  Y + ++  ++   +   T+     
Sbjct: 1   SGPVEVFITETPSQPNSHPIQWNAPQ----PSHISKYILRWRPKNSVGRWKEATIP---- 52

Query: 308 EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQP----------- 356
            G  +  T+  LK    Y   + ++ + G   ++      T+  TP              
Sbjct: 53  -GHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFS 111

Query: 357 ---PQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
                  + T +T+ +  VSWVS         + G++V Y  S+ 
Sbjct: 112 PLVATSESVTEITASSFVVSWVSAS-----DTVSGFRVEYELSEE 151

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 75.1 bits (184), Expect = 9e-16
 Identities = 20/144 (13%), Positives = 43/144 (29%), Gaps = 24/144 (16%)

Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPS--------------GPPTHIKVEATDQNT 264
            Y  ++++  + G  E +      T+   P                  T   V     ++
Sbjct: 68  VYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASS 127

Query: 265 LKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQ 324
             VSW        +  + G+ V Y+ +       +  +           + +  L    +
Sbjct: 128 FVVSWVSA-----SDTVSGFRVEYELSEEGDEPQYLDLP-----STATSVNIPDLLPGRK 177

Query: 325 YSVVVQALNKLGPGPMSEEVKQYT 348
           Y V V  +++ G   +     Q T
Sbjct: 178 YIVNVYQISEDGEQSLILSTSQTT 201

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 77.6 bits (191), Expect = 2e-17
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILP 108
            PP      + Q +  GE   ++C  +    P  I W+     L+  +  RYT+      
Sbjct: 13  GPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 71

Query: 109 NGVLSDLSIKRTERGD-SALFTC 130
            GV+S L+I    R D   ++ C
Sbjct: 72  EGVISTLTISNIVRADFQTIYNC 94

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 76.3 bits (188), Expect = 4e-17
 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 11/114 (9%)

Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
           +    P G PT + +  T  NT  + W PP+     G + GY + Y      +P    T+
Sbjct: 3   SGSSGP-GRPT-MMISTTAMNTALLQWHPPKEL--PGELLGYRLQYCRADEARP---NTI 55

Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQP 356
           DF K    + H T++ L   T Y   + A N+ G G   E+  + T E      
Sbjct: 56  DFGK---DDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIR-TPEDLSGPS 105

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 5/74 (6%)

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
             G L    ++     ++   T +            +  +GL K   YIF + A    G 
Sbjct: 33  LPGELLGYRLQYCRADEARPNTIDF-----GKDDQHFTVTGLHKGTTYIFRLAAKNRAGL 87

Query: 168 GQPSKNVTLSPSNR 181
           G+  +    +P + 
Sbjct: 88  GEEFEKEIRTPEDL 101

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 74.3 bits (183), Expect = 1e-16
 Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE 307
            S  PT ++V A    +L +SW           +  Y + Y ET  + P    TV     
Sbjct: 4   VSSVPTKLEVVAATPTSLLISWDASS-----SSVSYYRITYGETGGNSPVQEFTVP---- 54

Query: 308 EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEE 343
            G     T+S L     Y++ V A         S  
Sbjct: 55  -GSSSTATISGLSPGVDYTITVYAYYSYYDLYYSYS 89

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 5/46 (10%)

Query: 352 TPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
           +    P        T  ++ +SW +         +  Y++ YG + 
Sbjct: 3   SVSSVPTKLEVVAATPTSLLISWDASS-----SSVSYYRITYGETG 43

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 73.5 bits (181), Expect = 3e-16
 Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 13/115 (11%)

Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
           ++  +        +V        +V+W  P  +     +  Y + +           +  
Sbjct: 2   SSGSSGPDQCKPPQVTCRSATCAQVNWEVPLSN--GTDVTEYRLEWGGVEGS----MQIC 55

Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPP 357
                 G      +  L   T Y   VQAL+ +G GP SE V   T    P   P
Sbjct: 56  Y----CGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVT---PPSSGP 103

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAP 248
             TY+ R+ A + +G+   S+ V  +T   + 
Sbjct: 71  ATTYYCRVQALSVVGAGPFSEVVACVTPPSSG 102

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 74.1 bits (182), Expect = 3e-16
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 6/103 (5%)

Query: 256 KVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLT 315
                   T++V+W+   +  +   IQGY V Y++TS          +   +   E    
Sbjct: 23  NPVVLTPTTVQVTWTVDRQPQF---IQGYRVMYRQTSGL-QATSSWQNLDAKVPTERSAV 78

Query: 316 LSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQ 358
           L +LK    Y + V+       G  SE     T E +   P  
Sbjct: 79  LVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESG--PSS 119

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 73.3 bits (180), Expect = 5e-16
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 9/114 (7%)

Query: 240 TILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLF 299
           +  ++   P+ P   ++   T  N+  +SW  P          GY +   + +  +   F
Sbjct: 2   SSGSSGPVPATPILQLEECCTHNNSATLSWKQPPLS--TVPADGYILELDDGNGGQ---F 56

Query: 300 ETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
             V      GKE   T+  L   + Y+  V+A NK G  P S+ +   T+EG+ 
Sbjct: 57  REVY----VGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSG 106

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAP 248
           TY+ R+ A N+ G S  S T+ + T+E + 
Sbjct: 77  TYNARVKAFNKTGVSPYSKTLVLQTSEGSG 106

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380

 Score = 78.7 bits (193), Expect = 7e-16
 Identities = 29/180 (16%), Positives = 54/180 (30%), Gaps = 9/180 (5%)

Query: 234 EPSDTVTILTAEEAPSGPPTHIKVEAT-DQNTLKVSWSPPER-DHWNGVIQGYYVGYKET 291
             +   T  +  E    PP   ++        L + W PP   DH+      Y + Y+  
Sbjct: 17  STTFGCTSSSDTEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNI 76

Query: 292 STDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG-PGPMSEEVKQYTAE 350
            ++      T +   ++G + +     ++      +  Q  N        +E     + +
Sbjct: 77  GSETWKTIITKNLHYKDGFDLN---KGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQ 133

Query: 351 GTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTD 410
           G PE   QD  C     Q +  SW          +   Y + Y      +     D    
Sbjct: 134 GIPETXVQDMDCVYYNWQYLLCSWKPGIG---VLLDTNYNLFYWYEGLDHALQCVDYIKA 190

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380

 Score = 66.7 bits (162), Expect = 5e-12
 Identities = 26/181 (14%), Positives = 47/181 (25%), Gaps = 6/181 (3%)

Query: 220 YHIRIVAENEIGS-SEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWN 278
             +     N     S  ++T   ++ +  P      +     +   L  SW P       
Sbjct: 107 TLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGIG---V 163

Query: 279 GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPG 338
            +   Y + Y     D          +  +             Y  + + V   ++  P 
Sbjct: 164 LLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPI 223

Query: 339 PMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
             S              PP   T T  +S  I++ W  P           Y++     DT
Sbjct: 224 R-SSYFTFQLQNIVKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARCFD-YEIEIREDDT 281

Query: 399 W 399
            
Sbjct: 282 T 282

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380

 Score = 63.7 bits (154), Expect = 5e-11
 Identities = 23/149 (15%), Positives = 44/149 (29%), Gaps = 16/149 (10%)

Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
            +K ++I +   +E      S   T          PP ++         +K+ WS P   
Sbjct: 206 DYKDFYICVNGSSENKPIR-SSYFTFQLQNIVKPLPPVYLTFTRESSCEIKLKWSIPLGP 264

Query: 276 HWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKL 335
                   Y +  +E  T                +    TL +     Q   VV++   +
Sbjct: 265 IPARCFD-YEIEIREDDTTL---------VTATVENETYTLKTTNETRQLCFVVRSKVNI 314

Query: 336 GP---GPMSE--EVKQYTAEGTPEQPPQD 359
                G  SE  + + +  E   ++    
Sbjct: 315 YCSDDGIWSEWSDKQCWEGEDLSKKTLLR 343

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 71.7 bits (176), Expect = 1e-15
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
           + S  PT ++V A    +L +SW  P     +  +  Y + Y ET  + P    TV    
Sbjct: 3   SVSSVPTKLEVVAATPTSLLISWDAPMS---SSSVYYYRITYGETGGNSPVQEFTVP--- 56

Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEE 343
                   T+S L     Y++ V A  +   G M   
Sbjct: 57  --YSSSTATISGLSPGVDYTITVYAWGEDSAGYMFMY 91

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 352 TPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
           +    P        T  ++ +SW +P    ++  +  Y++ YG + 
Sbjct: 3   SVSSVPTKLEVVAATPTSLLISWDAPM---SSSSVYYYRITYGETG 45

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 76.7 bits (189), Expect = 1e-15
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
            PP F  K     + +G    L+CE +G  P  + W+ + + L      +Y     I+  
Sbjct: 191 EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS--GKKYK----IMSE 244

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQ 135
             L+ + I   +  D   + C+  + 
Sbjct: 245 NFLTSIHILNVDSADIGEYQCKASND 270

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 74.4 bits (183), Expect = 6e-15
 Identities = 36/202 (17%), Positives = 65/202 (32%), Gaps = 51/202 (25%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
           APP F++K  +     GE    +C   G  PI I W  +N+ + P  + + T+ E     
Sbjct: 4   APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVE---NT 60

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
                L++ +  +GD+  +TC                              AS   G+  
Sbjct: 61  AT---LTVLKVTKGDAGQYTCY-----------------------------ASNVAGKDS 88

Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK----------T 219
            S  + +      P  I     +      E  +  C   G P  +++W            
Sbjct: 89  CSAQLGV---QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSK 145

Query: 220 YHIRIVAEN---EIGSSEPSDT 238
           + +  V      E+ +    D+
Sbjct: 146 FRMSFVESVAVLEMYNLSVEDS 167

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 36/203 (17%), Positives = 63/203 (31%), Gaps = 53/203 (26%)

Query: 50  APPEFEIKLR-NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
            PP F  KL  ++  ++ E +  +C+  G   I +LW  +   +   S  R +  E +  
Sbjct: 97  EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESV-- 154

Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
               + L +      DS  +TCE                             A    G  
Sbjct: 155 ----AVLEMYNLSVEDSGDYTCE-----------------------------AHNAAGSA 181

Query: 169 QPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--------TY 220
             S + +L    + P                D+ L C   G P  ++ W           
Sbjct: 182 --SSSTSLKV--KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGK 237

Query: 221 HIRIVAEN-----EIGSSEPSDT 238
             +I++EN      I + + +D 
Sbjct: 238 KYKIMSENFLTSIHILNVDSADI 260

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 72.0 bits (177), Expect = 1e-15
 Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 9/123 (7%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S      T    P   P   ++    +N+L + W  P  D+    IQ + + + E
Sbjct: 1   GSSGSSGAEIFTTLSCEP-DIPNPPRIANRTKNSLTLQWKAPS-DN-GSKIQNFVLEWDE 57

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
              +  F           G +    ++ L         + A N  G    SEEV  YT+ 
Sbjct: 58  GKGNGEFC------QCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSG 111

Query: 351 GTP 353
            + 
Sbjct: 112 CSG 114

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAP 248
                 R+ A N+ G+S  S+ V   T+  + 
Sbjct: 83  AMGCKFRLSARNDYGTSGFSEEVLYYTSGCSG 114

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 78.7 bits (194), Expect = 1e-15
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
           APP F  KL + ++  GE   LQ   +G +PI + W  +   +  +SDN +     I  +
Sbjct: 476 APPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIW-----ISYS 530

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQ 135
             ++ L   R E  ++  +TC+IK++
Sbjct: 531 ENIATLQFSRAEPANAGKYTCQIKNE 556

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 35/194 (18%), Positives = 65/194 (33%), Gaps = 39/194 (20%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
            PP F  K     + +G    L+CE +G  P  + W+ + + L  +S  +Y     I+  
Sbjct: 383 EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL--RSGKKYK----IMSE 436

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
             L+ + I   +  D   + C                              AS ++G   
Sbjct: 437 NFLTSIHILNVDSADIGEYQC-----------------------------KASNDVGSDT 467

Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENE 229
              ++TL    + P R      + +    E+++L     G     + W      IV E++
Sbjct: 468 CVGSITL----KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESD 523

Query: 230 IGSSEPSDTVTILT 243
                 S+ +  L 
Sbjct: 524 NIWISYSENIATLQ 537

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 72.9 bits (179), Expect = 8e-14
 Identities = 41/263 (15%), Positives = 77/263 (29%), Gaps = 72/263 (27%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
           PP F   L +  +  GEP  LQC+  G   I I W   + +L      +   +       
Sbjct: 5   PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFK------N 58

Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
            ++ L I + +  D   +TC                              A  ++G    
Sbjct: 59  NVASLVINKVDHSDVGEYTC-----------------------------KAENSVGAVAS 89

Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--------TYHI 222
           S  + +    ++P   A    +   T    +   C   G    ++ W           ++
Sbjct: 90  SAVLVIKER-KLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANL 148

Query: 223 RI------------------------VAENEIGSSEPSDTVTILTAEEAPS--GPPTHIK 256
           +                          A N +G++  S  +T+   E  P     P  + 
Sbjct: 149 QTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVD 208

Query: 257 VEATDQNTL--KVSWSPPERDHW 277
           +   +  T    V+ + P +  W
Sbjct: 209 LALGESGTFKCHVTGTAPIKITW 231

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 69.8 bits (171), Expect = 9e-13
 Identities = 36/231 (15%), Positives = 63/231 (27%), Gaps = 71/231 (30%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
           PP F  KL++     G P   +C   G +P+ + W  + + L   ++ +           
Sbjct: 101 PPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQ------TSFIH 154

Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
            ++ L I +T++     + C                             +AS  +G    
Sbjct: 155 NVATLQILQTDQSHVGQYNC-----------------------------SASNPLGTASS 185

Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK------------ 218
           S  +TLS     P        +      E     C   G    +I W             
Sbjct: 186 SAKLTLSEHEVPPFFDLKP-VSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNY 244

Query: 219 -------TYHIRI-------------VAENEIGSSEPSDTVTILTAEEAPS 249
                  T  + +              A N  G    S  + +   +E P 
Sbjct: 245 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV---QEPPR 292

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 52/328 (15%), Positives = 99/328 (30%), Gaps = 100/328 (30%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
            PP F++K  +     GE    +C   G  PI I W  +N+ + P  + + T+ E     
Sbjct: 196 VPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVE---NT 252

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
             L+   + +  +GD+  +TC                              AS   G+  
Sbjct: 253 ATLT---VLKVTKGDAGQYTC-----------------------------YASNVAGKDS 280

Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--------TYH 221
            S  + +      P  I     +      E  +  C   G P  +++W         +  
Sbjct: 281 CSAQLGV---QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSK 337

Query: 222 IRI------------------------VAENEIGSSEPSDTVTILTAEEAPS--GPPTHI 255
            R+                         A N  GS+  S ++ +   +E P     P  +
Sbjct: 338 FRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV---KEPPVFRKKPHPV 394

Query: 256 KVEATDQNTL--KVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHH 313
           +        L  ++  +PP +  W       +   +E  + K +          E     
Sbjct: 395 ETLKGADVHLECELQGTPPFQVSW-------HKDKRELRSGKKYKIM------SENFLTS 441

Query: 314 LTLSSLK-----TYTQYSVVVQALNKLG 336
           + + ++       Y       +A N +G
Sbjct: 442 IHILNVDSADIGEYQ-----CKASNDVG 464

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 74.9 bits (184), Expect = 2e-15
 Identities = 40/224 (17%), Positives = 65/224 (29%), Gaps = 51/224 (22%)

Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK----------T 219
            S  +    S+    ++              + + C     P+  I W            
Sbjct: 6   ASSALVPRGSHMYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNY 64

Query: 220 YHIRI------------------------VAENEIGSSEPSDTVTILTAEEAPSGPPTHI 255
            +I+I                         A N IG       +            P+  
Sbjct: 65  SNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQAD----TPSSPSID 120

Query: 256 KVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDK-PFLFETVDFSKEEGKEHHL 314
           +VE    +T +V +  PE       I  Y   ++    +     +      KE   E  +
Sbjct: 121 QVEPY-SSTAQVQFDEPEATG-GVPILKYKAEWRAVGEEVWHSKWYDA---KEASMEGIV 175

Query: 315 TLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQ 358
           T+  LK  T Y+V + ALN  G G +S   +  T      QP Q
Sbjct: 176 TIVGLKPETTYAVRLAALNGKGLGEISAASEFKT------QPVQ 213

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 67.5 bits (165), Expect = 4e-13
 Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 5/86 (5%)

Query: 49  SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
              P+ +       +  G    + CE        I W  + + L   + +   I      
Sbjct: 17  MYAPKLQGP-VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYN---- 71

Query: 109 NGVLSDLSIKRTERGDSALFTCEIKS 134
               S L +      D   + C   +
Sbjct: 72  TPSASYLEVTPDSENDFGNYNCTAVN 97

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 77.2 bits (190), Expect = 2e-15
 Identities = 35/169 (20%), Positives = 55/169 (32%), Gaps = 32/169 (18%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
            P  F  +  + T+  G+  +L+CE  G+    I W  N + L+P   +    R  +LP+
Sbjct: 120 GPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDS---RVVVLPS 176

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
           G    L I R + GDS ++ C  ++   +      E                        
Sbjct: 177 GA---LQISRLQPGDSGVYRCSARNPASTRTGNEAEV----------------------- 210

Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
               +   P             N  A   +D  L C   G P P   W 
Sbjct: 211 ---RILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWL 256

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 73.7 bits (181), Expect = 3e-14
 Identities = 40/207 (19%), Positives = 68/207 (32%), Gaps = 40/207 (19%)

Query: 49  SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPI-GILWNMNNKRLDPKSDNRYTIREEIL 107
                F  +  +  + RG   +L C A+ ++ +  I W  +   L    D+R       L
Sbjct: 19  RRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQ----QL 74

Query: 108 PNGVL--SDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNI 165
           PNG L   ++   R  + D  L+ C                              AS   
Sbjct: 75  PNGSLLIQNILHSRHHKPDEGLYQC-----------------------------EASLGD 105

Query: 166 GEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--TYHIR 223
                S+   +  +   P R  S  ++ TA   + + L C  +G P P I W+     + 
Sbjct: 106 SGSIISRTAKVMVA--GPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLN 163

Query: 224 IVAENEIGSSEPSDTVTILTAEEAPSG 250
            +  +      PS  + I   +   SG
Sbjct: 164 PIPGDSRVVVLPSGALQISRLQPGDSG 190

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 56.8 bits (137), Expect = 7e-09
 Identities = 30/169 (17%), Positives = 49/169 (28%), Gaps = 41/169 (24%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
               F  +  N  +  G+ +VL+C   G  P    W    + +  +S      +  +L  
Sbjct: 220 RQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSK-----KYSLLGG 274

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
               +L I      DS  +TC                               +       
Sbjct: 275 S---NLLISNVTDDDSGTYTC-----------------------------VVTYKNENIS 302

Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
            S  +T+     VP    +   N  A  + DI+  C   G P P + W 
Sbjct: 303 ASAELTV----LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWM 347

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 9/86 (10%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
            PP F     N  +        +C   G+    + W  N   + P          +I+  
Sbjct: 311 VPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSD------YFQIVGG 364

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQ 135
               +L I    + D   + C  +++
Sbjct: 365 S---NLRILGVVKSDEGFYQCVAENE 387

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 70.6 bits (173), Expect = 3e-15
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 10/111 (9%)

Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
           ++  +   PP+++ + +   ++L+VSW+PP      G +  Y++ Y   S   P    +V
Sbjct: 2   SSGSSGRSPPSNLALASETPDSLQVSWTPP-----LGRVLHYWLTYAPASGLGPEKSVSV 56

Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
                 G   H+TL  L+  T+Y V+V A+   G         Q      P
Sbjct: 57  P-----GARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACPSGP 102

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
           ++  +   PP +    + T  +++VSW +PP     G +  Y + Y P+ 
Sbjct: 2   SSGSSGRSPPSNLALASETPDSLQVSW-TPP----LGRVLHYWLTYAPAS 46

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 70.3 bits (172), Expect = 6e-15
 Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 15/124 (12%)

Query: 220 YHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNG 279
           +H       +      +     L  + + S  PT ++V A    +L +SW  P       
Sbjct: 5   HHHHSSDYKDDDDKGEN-----LYFQGSVSDVPTKLEVVAATPTSLLISWDAP-----AV 54

Query: 280 VIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGP 339
            ++ Y + Y ET  + P    TV      G +   T+S LK    Y++ V A+  L    
Sbjct: 55  TVRYYRITYGETGGNSPVQEFTVP-----GSKSTATISGLKPGVDYTITVYAVTGLRLML 109

Query: 340 MSEE 343
              +
Sbjct: 110 AGSK 113

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 342 EEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
           ++ +    +G+    P        T  ++ +SW +P        ++ Y++ YG + 
Sbjct: 17  DKGENLYFQGSVSDVPTKLEVVAATPTSLLISWDAPA-----VTVRYYRITYGETG 67

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 72.1 bits (177), Expect = 8e-15
 Identities = 36/170 (21%), Positives = 56/170 (32%), Gaps = 38/170 (22%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILP 108
           +   F   +  Q  ++GE + + C       P  + W  +N+ +   SDNR+     +L 
Sbjct: 1   SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPA-VSWLYHNEEVTTISDNRFA----MLA 55

Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
           N     L I    + D  ++ CE +           EA G    ++ I  V     I   
Sbjct: 56  NNN---LQILNINKSDEGIYRCEGRV----------EARGEIDFRDIIVIVNVPPAISMP 102

Query: 169 QPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
           Q S N T                       E++   C   G P P I W 
Sbjct: 103 QKSFNATAERG-------------------EEMTFSCRASGSPEPAISWF 133

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 57.9 bits (140), Expect = 5e-10
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 45  LLLSSAPPEFEI--KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTI 102
           +++ + PP   +  K  N T+ RGE     C A G     I W  N K ++   + +Y +
Sbjct: 90  IVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE--NEKYIL 147

Query: 103 REEILPNGVLSDLSIKRTERGDSALFTCE 131
           +         ++L+++     D   + C 
Sbjct: 148 KGSN------TELTVRNIINSDGGPYVCR 170

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107

 Score = 69.4 bits (170), Expect = 1e-14
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 14/112 (12%)

Query: 247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
           A S     +K+   +   L+++W+     +  G +  Y +       +            
Sbjct: 8   AESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNL-SYELHVLNQDEEWH---------- 56

Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQ 358
           +   E  + L+ L+  T Y V V+ L  LGPGP S + +  T+   P   P 
Sbjct: 57  QMVLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTS---PPSGPS 105

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 12/127 (9%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S  + +     AP  P     +   ++  + ++W+ P  D  N  +  Y +   E
Sbjct: 4   GSSGRSAHLRVRQLPHAPEHP--VATLSTVERRAINLTWTKP-FDG-NSPLIRYILEMSE 59

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
            +     L  +VD      K   +T+  L     Y   + A+N +G G  S++ ++ +  
Sbjct: 60  NNAPWTVLLASVD-----PKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVS-- 112

Query: 351 GTPEQPP 357
             PE  P
Sbjct: 113 -LPESGP 118

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 7/32 (21%), Positives = 16/32 (50%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAP 248
            ++Y  R+ A N++G  + S     ++  E+ 
Sbjct: 86  ARSYQFRLCAVNDVGKGQFSKDTERVSLPESG 117

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 69.4 bits (170), Expect = 1e-14
 Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 4/116 (3%)

Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
           ++  +    P+  +VE    +T +V +  PE       I  Y   ++    +        
Sbjct: 2   SSGSSGPSSPSIDQVEPYS-STAQVQFDEPEATG-GVPILKYKAEWRAVGEEVWH--SKW 57

Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQ 358
             +KE   E  +T+  LK  T Y+V + ALN  G G +S   +  T        P+
Sbjct: 58  YDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPK 113

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 10/37 (27%), Positives = 12/37 (32%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
             TY +R+ A N  G  E S      T        P 
Sbjct: 77  ETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPK 113

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 68.8 bits (168), Expect = 2e-14
 Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 10/128 (7%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S          +   PP   KV     +++++ W   +++   G  + +     E
Sbjct: 1   GSSGSSGMEPHKVVPLSKPHPPVVGKVTH---HSIELYWDLEQKEKRQGPQEQWLRFSIE 57

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
               K   +  +      G      +  L+  T Y   ++  +  G    S  V   T  
Sbjct: 58  EEDPKMHSYGVIY----TGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVAT-- 111

Query: 351 GTPEQPPQ 358
            T E  P 
Sbjct: 112 -TRESGPS 118

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAP 248
            Y  R+   +  G  E S  V++ T  E+ 
Sbjct: 87  LYKFRLKVTSPSGEYEYSPVVSVATTRESG 116

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S  V   T  + P  P           ++ K++W PP+ D+    I  Y V   E
Sbjct: 1   GSSGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPK-DNGGATINKYVVEMAE 59

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
            S      +E +      G         L     Y + V  ++  G   +SE +   T  
Sbjct: 60  GSNGNK--WEMI----YSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPA 113

Query: 351 GTPEQP 356
            +    
Sbjct: 114 VSGPSS 119

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 6/33 (18%), Positives = 15/33 (45%)

Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGP 251
            Y +R+   ++ G S  S+++ + T   +    
Sbjct: 87  FYRLRVYCISDGGQSAVSESLLVQTPAVSGPSS 119

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 70.6 bits (173), Expect = 3e-14
 Identities = 48/236 (20%), Positives = 75/236 (31%), Gaps = 61/236 (25%)

Query: 49  SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
           + PPE   K +NQ  R G  +   C A+G+ P  I+W  N K++   + +RYT+   +  
Sbjct: 4   AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSG-TQSRYTV---LEQ 59

Query: 109 NGVLSDLSIKRTERG-DSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
            G +S L I+    G D A + C  ++             G     +    +        
Sbjct: 60  PGGISILRIEPVRAGRDDAPYECVAEN-----------GVGDAVSADATLTIYEGDKTPA 108

Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--------- 218
           G P   +T  P  R                   + + C  +G P P I W          
Sbjct: 109 GFPV--ITQGPGTR------------VIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMS 154

Query: 219 TYHIRI--------------------VAENEIGSSEPSDTVTILTAEEAPSGPPTH 254
                +                    VAEN +G+       T L  +    G   H
Sbjct: 155 NPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEH--SKATNLYVKVRRVGTKHH 208

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 9/85 (10%)

Query: 47  LSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI 106
             +  P        +    G   ++ C+A G     I W  N  ++D  S+ RY      
Sbjct: 106 TPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDM-SNPRY-----S 159

Query: 107 LPNGVLSDLSIKRTERGDSALFTCE 131
           L +G    L I+ +   D   + C 
Sbjct: 160 LKDGF---LQIENSREEDQGKYECV 181

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 67.3 bits (165), Expect = 5e-14
 Identities = 24/116 (20%), Positives = 48/116 (41%), Gaps = 12/116 (10%)

Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
           ++  +   PP  + V  T   ++ ++W        +  +  Y + Y+   T+ PF     
Sbjct: 2   SSGSSGPKPPIDLVVTETTATSVTLTWDSGN----SEPVTYYGIQYRAAGTEGPFQ---- 53

Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQ 358
               +       ++  L  +++Y+  V A+N +G GP SE V+  T E +   P  
Sbjct: 54  --EVDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSG--PSS 105

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
           +  Y  R++A N IG   PS+ V   T E++   P +
Sbjct: 71  FSEYAFRVLAVNSIGRGPPSEAVRARTGEQSG--PSS 105

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 6/114 (5%)

Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
           +    P+  P H+ VE     T  + W PP+R    G I GY V Y    ++     E V
Sbjct: 3   SGSSGPTSAPQHLTVEDVTDTTTTLKWRPPDRIG-AGGIDGYLVEYCLEGSE-----EWV 56

Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQP 356
             +KE  +    T+  L T  +    V  +N  G    +  ++  T   +    
Sbjct: 57  PANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSS 110

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGP 251
                 R+V  N  G SEP+  +  +T  E+    
Sbjct: 76  GARILFRVVGVNIAGRSEPATLLQPVTIRESGPSS 110

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score = 67.0 bits (164), Expect = 1e-13
 Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 9/130 (6%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S         + P  PP  +++      ++++SW+P + D+ N  I  + + Y++
Sbjct: 1   GSSGSSGPTP-APVYDVP-NPPFDLELTDQLDKSVQLSWTPGD-DN-NSPITKFIIEYED 56

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQY-TA 349
                       + S  +         +L  Y  YS  V A+N +G    SE  +QY T 
Sbjct: 57  AMHKPGLWHHQTEVSGTQ----TTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTK 112

Query: 350 EGTPEQPPQD 359
              P++ P  
Sbjct: 113 ASEPDKNPTS 122

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 217 WKTYHIRIVAENEIGSSEPSD-TVTILTAEEAPSGPPTHIKVE 258
           +  Y  R++A N IG S PS+ +   LT    P   PT     
Sbjct: 84  YVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSGPSS 126

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 21/114 (18%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
           ++  + + PPT + V++    T+ + W PP+       + GY + Y    T+     + +
Sbjct: 2   SSGSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIG-AAGLDGYVLEYCFEGTE-----DWI 55

Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQP 356
             +K+   +   T++ L T  +  V V+A+N  G        +    + +    
Sbjct: 56  VANKDLIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPSS 109

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
                +R+ A N  G+SEP      +  +E+  GP +
Sbjct: 75  DAKIFVRVKAVNAAGASEPKYYSQPILVKES--GPSS 109

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 70.2 bits (172), Expect = 2e-13
 Identities = 35/169 (20%), Positives = 54/169 (31%), Gaps = 36/169 (21%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
               F   +  Q  ++GE + + C         + W  +N+ +   SDNR+     +L N
Sbjct: 97  QKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFA----MLAN 152

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
                L I    + D  ++ CE +           EA G    ++ I  V     I   Q
Sbjct: 153 NN---LQILNINKSDEGIYRCEGRV----------EARGEIDFRDIIVIVNVPPAISMPQ 199

Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
            S N T                       E++   C   G P P I W 
Sbjct: 200 KSFNATAERG-------------------EEMTFSCRASGSPEPAISWF 229

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 68.7 bits (168), Expect = 6e-13
 Identities = 32/171 (18%), Positives = 47/171 (27%), Gaps = 38/171 (22%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           S A  +  I L       GE     C A GE P  I W          S  R      + 
Sbjct: 1   SMALLQVTISLSKVELSVGESKFFTCTAIGE-PESIDWYNPQGEK-IISTQRVV----VQ 54

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
             GV S L+I      D+ ++ C+              A G  ++   +  +        
Sbjct: 55  KEGVRSRLTIYNANIEDAGIYRCQATD-----------AKGQTQEATVVLEIYQKLTF-- 101

Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
                      S +                 ED ++ C     PAP + W 
Sbjct: 102 -------REVVSPQ------------EFKQGEDAEVVCRVSSSPAPAVSWL 133

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 57.1 bits (138), Expect = 3e-09
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 10/93 (10%)

Query: 45  LLLSSAPPEFEI--KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTI 102
           +++ + PP   +  K  N T+ RGE     C A G     I W  N K ++   + +Y +
Sbjct: 186 IVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE--NEKYIL 243

Query: 103 REEILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135
           +         ++L+++     D   + C   ++
Sbjct: 244 KGSN------TELTVRNIINSDGGPYVCRATNK 270

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 9/112 (8%)

Query: 243 TAEEAPSGPPTHIKVEATDQNT-LKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFET 301
           +    P GP    +++   +   +++ W PP  D     I  Y V       D+P     
Sbjct: 3   SGSSGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDG-GSPISCYSVEMSPIEKDEPREVYQ 61

Query: 302 VDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
                  G E   T+SSL     YS  ++A NK+G GP SE+    TA G+ 
Sbjct: 62  -------GSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGSG 106

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAP 248
            KTY  R+ A N++G    S+   I TA  + 
Sbjct: 75  GKTYSFRLRAANKMGFGPFSEKCDITTAPGSG 106

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 36/200 (18%), Positives = 55/200 (27%), Gaps = 51/200 (25%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILP 108
             P     L    +   E +   C  +   +P  I W  N   +    D RY+    I  
Sbjct: 6   KAPVITTPLETVDALVEEVATFMCAVESYPQPE-ISWTRNKILIKL-FDTRYS----IRE 59

Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
           NG    L+I   E  D  ++ C                             TA+  +G  
Sbjct: 60  NG--QLLTILSVEDSDDGIYCC-----------------------------TANNGVGG- 87

Query: 169 QPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--------TY 220
                  L     +  +I     N          LPC T+G P P + W           
Sbjct: 88  AVESCGALQVK--MKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENS 145

Query: 221 HIRIVAEN--EIGSSEPSDT 238
            I ++      I + +  D 
Sbjct: 146 RIAVLESGSLRIHNVQKEDA 165

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 11/83 (13%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILP 108
             P+      N     G  +VL C   G  KP  + W   +  L    ++R      +L 
Sbjct: 99  MKPKITRPPINVKIIEGLKAVLPCTTMGNPKPS-VSWIKGDSALRE--NSRIA----VLE 151

Query: 109 NGVLSDLSIKRTERGDSALFTCE 131
           +G    L I   ++ D+  + C 
Sbjct: 152 SG---SLRIHNVQKEDAGQYRCV 171

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 67.9 bits (166), Expect = 2e-13
 Identities = 39/216 (18%), Positives = 62/216 (28%), Gaps = 61/216 (28%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
           A  +        T  +G+P  L C  +G +   I W  +   +    D  Y    E    
Sbjct: 1   AGLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQN-LDQLYIPVSEQHWI 59

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
           G    LS+K  ER D+  + C++                               + GE +
Sbjct: 60  GF---LSLKSVERSDAGRYWCQV------------------------------EDGGETE 86

Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAP-EIIWK---------- 218
            S+ V L  +            +         +L C  VG P P  I+W           
Sbjct: 87  ISQPVWL--TVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA 144

Query: 219 --TYHIRIV-----------AENEIGSSEPSDTVTI 241
                + +            A N  G +  S T T+
Sbjct: 145 PSPSVLNVTGVTQSTMFSCEAHNLKGLAS-SRTATV 179

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 71.5 bits (174), Expect = 2e-13
 Identities = 24/139 (17%), Positives = 53/139 (38%), Gaps = 8/139 (5%)

Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
             + ++  +   N +G ++ +  + +   E      PT +KV+  +   +  SW  P   
Sbjct: 356 GQEIHNFTLTGRNPLGQAQSAVVINVT--ERVAPHDPTSLKVKDINSTVVTFSWYLPG-- 411

Query: 276 HWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQA--LN 333
           ++  +     +   + ++ K     T+     E   +H+ +  L  YT Y+  V+     
Sbjct: 412 NFTKINLLCQIEICKANSKKEVRNATI--RGAEDSTYHVAVDKLNPYTAYTFRVRCSSKT 469

Query: 334 KLGPGPMSEEVKQYTAEGT 352
                  S+E +  T E T
Sbjct: 470 FWKWSRWSDEKRHLTTEAT 488

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 58.0 bits (139), Expect = 4e-09
 Identities = 51/382 (13%), Positives = 105/382 (27%), Gaps = 28/382 (7%)

Query: 35  LNPSFNGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEK-PIGILWNMNNKRLD 93
           L+P  +      L+    +F +  ++ +     P +L   A      + + WN     L 
Sbjct: 60  LSPGDHEVTINYLNGFQSKFTLNEKDVSLIPETPEILDLSADFFTSSLLLKWNDRGSALP 119

Query: 94  PKSDNRYTIR-EEILPNGVLSDLSIKRTERGDSALFTCEIKSQK-----ISSQQMTYEAS 147
             S+  + I+  +      ++ + +     G   +      S         S  + +   
Sbjct: 120 HPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQCATHSVSIRWHID 179

Query: 148 GLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLT 207
                    +   +         +    + P ++V         N T       K+    
Sbjct: 180 SPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKV----VLAGSNMTICCMSPTKVLSGQ 235

Query: 208 VGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILTAE----------EAPSGPPTHIKV 257
           +G     +I        +    I  SE S T  I   +            P   P  +  
Sbjct: 236 IGNTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSC 295

Query: 258 EATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLS 317
           E  D   +  SW+P       G     Y  ++  S     +F  ++    E   + L + 
Sbjct: 296 ETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSA-VFHRIEGLTNE--TYRLGVQ 352

Query: 318 SLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSP 377
                  ++  +   N LG       V     E      P       + S  +  SW  P
Sbjct: 353 MHPGQEIHNFTLTGRNPLGQA--QSAVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLP 410

Query: 378 PLITANGVIKGYKVVYGPSDTW 399
                  +    ++    +++ 
Sbjct: 411 G--NFTKINLLCQIEICKANSK 430

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 65.2 bits (159), Expect = 2e-13
 Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 12/112 (10%)

Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
           +    P  PP  + + A    T+ ++W P            Y V     S         V
Sbjct: 3   SGSSGPLPPPRALTLAAVTPRTVHLTWQPSAG------ATHYLVRCSPASPKGEEEEREV 56

Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPE 354
              + E     + L  L+    Y V VQ+L        +  ++  T    P 
Sbjct: 57  QVGRPE-----VLLDGLEPGRDYEVSVQSLRGPEGSE-ARGIRARTPTSGPS 102

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 6/51 (11%)

Query: 348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDT 398
           +    P  PP+  T   +T +T+ ++W      T       Y V   P+  
Sbjct: 3   SGSSGPLPPPRALTLAAVTPRTVHLTWQPSAGAT------HYLVRCSPASP 47

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 67.9 bits (166), Expect = 2e-13
 Identities = 28/201 (13%), Positives = 50/201 (24%), Gaps = 48/201 (23%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
             + +I         GE     C+  G+ K   I W   N      +  R ++      +
Sbjct: 2   VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
                L+I      D+ ++ C                               +   G   
Sbjct: 62  ST---LTIYNANIDDAGIYKC-----------------------------VVTAEDGTQS 89

Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK----------T 219
               V +           +          ED  + C  V    P IIWK           
Sbjct: 90  -EATVNVKI--FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD 146

Query: 220 YHIRIVAEN--EIGSSEPSDT 238
               +++ N  +I   + +D 
Sbjct: 147 VRFIVLSNNYLQIRGIKKTDE 167

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 61.0 bits (148), Expect = 5e-11
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
               F+     Q  + GE +V+ C+     P  I+W    + +  K D R+     +L N
Sbjct: 99  QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI----VLSN 154

Query: 110 GVLSDLSIKRTERGDSALFTCE 131
                L I+  ++ D   + CE
Sbjct: 155 NY---LQIRGIKKTDEGTYRCE 173

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 6/123 (4%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S +         P   P    +    + ++ V+W P   +     IQ + V YK+
Sbjct: 1   GSSGSSGSQPDHGRLSPP-EAPDRPTISTASETSVYVTWIPRG-NG-GFPIQSFRVEYKK 57

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
                 +    +  S        + ++ L+    Y   V+ALN LG    S   + Y   
Sbjct: 58  LKKVGDW---ILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVS 114

Query: 351 GTP 353
           G+ 
Sbjct: 115 GSG 117

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 217 WKTYHIRIVAENEIGSSEPSD-TVTILTAEEAPS 249
             +Y  R+ A N +G SEPS  +   + +   PS
Sbjct: 86  GISYKFRVRALNMLGESEPSAPSRPYVVSGSGPS 119

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137

 Score = 65.8 bits (160), Expect = 3e-13
 Identities = 33/134 (24%), Positives = 43/134 (32%), Gaps = 14/134 (10%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGV-------IQG 283
           GSS  S        E   S              T+ ++WSPP               + G
Sbjct: 1   GSSGSSGDEETKAFEALLSNIVK-PVASDIQARTVVLTWSPPSSLINGETDESSVPELYG 59

Query: 284 YYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEE 343
           Y V    T  D  +       S   G+E ++TL+ LK    Y   VQA      G  SE 
Sbjct: 60  YEVLISSTGKDGKY------KSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEA 113

Query: 344 VKQYTAEGTPEQPP 357
               T    P+ P 
Sbjct: 114 EIFTTLSCEPDIPN 127

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 64.6 bits (158), Expect = 4e-13
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           S APP F++ L +Q+ R G+  ++    +GE    + W  N + + P    R+    E  
Sbjct: 2   SKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRP-DQRRFAEEAE-- 58

Query: 108 PNGVLSDLSIKRTERGDSALFTCE 131
             G+   L I   ERGD+  +TC+
Sbjct: 59  -GGLCR-LRILAAERGDAGFYTCK 80

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 67.1 bits (164), Expect = 4e-13
 Identities = 22/194 (11%), Positives = 55/194 (28%), Gaps = 42/194 (21%)

Query: 47  LSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI 106
           +++  P F   L++     G  +  +    G     + W  + + +   +     I    
Sbjct: 1   MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFS- 59

Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIG 166
             +G    L+I    + +S  ++                               A+   G
Sbjct: 60  --DGRAK-LTIPAVTKANSGRYSL-----------------------------KATNGSG 87

Query: 167 EGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK-------- 218
           +   +  + +      P        + T      ++L     G+P P + +         
Sbjct: 88  QATSTAELLVKAE-TAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQS 146

Query: 219 TYHIRIVAENEIGS 232
           +   +I  E ++ S
Sbjct: 147 SLDFQISQEGDLYS 160

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 57.8 bits (140), Expect = 6e-10
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 6/86 (6%)

Query: 49  SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
           +APP F  +L++ T R+G    LQ    G     + +  +   +       +     I  
Sbjct: 101 TAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQS--SLDFQ----ISQ 154

Query: 109 NGVLSDLSIKRTERGDSALFTCEIKS 134
            G L  L I      DS  ++    +
Sbjct: 155 EGDLYSLLIAEAYPEDSGTYSVNATN 180

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 67.1 bits (164), Expect = 5e-13
 Identities = 33/171 (19%), Positives = 56/171 (32%), Gaps = 34/171 (19%)

Query: 49  SAPPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           +  P F+ +LRN   R    + L C+  G  KPI + W    K +      +Y I+E   
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPI-VKWYRQGKEIIA-DGLKYRIQEF-- 57

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
             G    L I      D+ ++                 A+      N    V+ + ++  
Sbjct: 58  KGGYHQ-LIIASVTDDDATVYQV--------------RAT------NQGGSVSGTASL-- 94

Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
                 V +     +P  +        A   E + +     G P P I W+
Sbjct: 95  -----EVEVPAKIHLPKTLEGMGA-VHALRGEVVSIKIPFSGKPDPVITWQ 139

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 5/85 (5%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
            P+    +    + RGE   ++    G+    I W      +D   +  Y +        
Sbjct: 104 LPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDN--NGHYQVIVT---RS 158

Query: 111 VLSDLSIKRTERGDSALFTCEIKSQ 135
             S +     ER D+  +    K++
Sbjct: 159 FTSLVFPNGVERKDAGFYVVCAKNR 183

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 64.3 bits (157), Expect = 5e-13
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 5/106 (4%)

Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
           +  + PS  P+  +VE    +T +V +  PE       I  Y   ++    +        
Sbjct: 2   SHMDTPS-SPSIDQVEPYS-STAQVQFDEPEATG-GVPILKYKAEWRAVGEEV--WHSKW 56

Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT 348
             +KE   E  +T+  LK  T Y+V + ALN  G G +S   +  T
Sbjct: 57  YDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 102

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 68.8 bits (167), Expect = 5e-13
 Identities = 35/209 (16%), Positives = 69/209 (33%), Gaps = 23/209 (11%)

Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
           +++   +RI AE E  +S   +  +     +A  GPP  + +EA D   + +  SP  +D
Sbjct: 70  VYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGPP-EVHLEAED-KAIVIHISPGTKD 126

Query: 276 H----WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQA 331
                 +G+   Y +   + S+      E               +  L   T Y + V+A
Sbjct: 127 SVMWALDGLSFTYSLVIWKNSSGVEERIEN--------IYSRHKIYKLSPETTYCLKVKA 178

Query: 332 LNKLGP--GPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGY 389
                   G  S      T       PP++   +   +Q   + W              +
Sbjct: 179 ALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSV-QNQNYVLKWDYTY--ANMTFQVQW 235

Query: 390 KVVY---GPSDTWYGDPKTDICTDIRASW 415
              +    P +  Y   +   C +++ + 
Sbjct: 236 LHAFLKRNPGNHLYKWKQIPDCENVKTTQ 264

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 51.5 bits (122), Expect = 3e-07
 Identities = 25/135 (18%), Positives = 42/135 (31%), Gaps = 6/135 (4%)

Query: 217 WKTYHIRIVAENEIGS--SEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPER 274
             TY +++ A           S    I T  E    PP +I+V   +QN + + W     
Sbjct: 169 ETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYV-LKWDYTYA 227

Query: 275 DHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSS-LKTYTQYSVVVQALN 333
           +        +   + + +              E  K         +     Y + VQA +
Sbjct: 228 N--MTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASD 285

Query: 334 KLGPGPMSEEVKQYT 348
                  SEE+K  T
Sbjct: 286 GNNTSFWSEEIKFDT 300

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 47.2 bits (111), Expect = 7e-06
 Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 9/173 (5%)

Query: 248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE 307
           P   P  ++V+  D N + + W+  +    N     +   Y++T  D             
Sbjct: 3   PLKSPQKVEVDIIDDNFI-LRWNRSDESVGNVT---FSFDYQKTGMDNWIKLSGCQNITS 58

Query: 308 EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTS 367
              + + +   L  Y +  + ++A  +       E             PP+ +      +
Sbjct: 59  --TKCNFSSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKA 115

Query: 368 QTIRVS--WVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSP 418
             I +S       +   +G+   Y +V   + +   +   +I +  +   +SP
Sbjct: 116 IVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSP 168

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 68.7 bits (168), Expect = 5e-13
 Identities = 39/239 (16%), Positives = 72/239 (30%), Gaps = 63/239 (26%)

Query: 43  PPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTI 102
               L S  P  ++  + +   R   + + C A G     I W  +   +DP + N    
Sbjct: 100 REDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNG--- 156

Query: 103 REEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAS 162
           R + L +G    L I+ +E  D   + C                              A+
Sbjct: 157 RIKQLRSGA---LQIESSEETDQGKYEC-----------------------------VAT 184

Query: 163 TNIGEGQPSKNVTLSPSNR-VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--- 218
            + G    S    L    + V  R +    +       ++ + C+ VG P P + W    
Sbjct: 185 NSAGVRY-SSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGA 243

Query: 219 ------------TYHIRI-----------VAENEIGSSEPSDTVTILTAEEAPSGPPTH 254
                          + +           VA + +G  E    +T+ +  +A +    H
Sbjct: 244 EDLTPEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKHHHH 302

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 62.9 bits (153), Expect = 5e-11
 Identities = 45/268 (16%), Positives = 77/268 (28%), Gaps = 73/268 (27%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
            PP F  + ++Q    G  +   C+A G+    + WN   K+++  S    TI  +    
Sbjct: 5   EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN--SQRFETIEFDESAG 62

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
            VL    ++     D  ++ C                              A  ++GE  
Sbjct: 63  AVLRIQPLRTPR--DENVYECV-----------------------------AQNSVGEIT 91

Query: 170 PSKNVTLSPSNRVPARIASFND---NFTATYTEDIKLPCLTVGVPAPEIIWK-------- 218
               +T+   +++P+   + +          T    + C   G P PEI W         
Sbjct: 92  VHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDP 151

Query: 219 -TYHIRI-----------------------VAENEIGSSEPSD-TVTILTAEEAP--SGP 251
              + RI                       VA N  G    S   + +     AP  S  
Sbjct: 152 SASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSIL 211

Query: 252 PTHIKVEATDQNTL--KVSWSPPERDHW 277
           P   ++       +      SP     W
Sbjct: 212 PMSHEIMPGGNVNITCVAVGSPMPYVKW 239

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 69.7 bits (169), Expect = 6e-13
 Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 18/143 (12%)

Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWN 278
            Y +R+ A +   +S  S+ +   T  +A   PP    + +   ++  +    P++    
Sbjct: 280 IYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPV-FNIRSLS-DSFHIYIGAPKQSGNT 337

Query: 279 GVIQG----YYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNK 334
            VIQ     Y + + E +++           K   K+  +T+ +LK  T Y V  +A   
Sbjct: 338 PVIQDYPLIYEIIFWENTSNAER--------KIIEKKTDVTVPNLKPLTVYCVKARAHTM 389

Query: 335 LG----PGPMSEEVKQYTAEGTP 353
                     S+ V + T  G  
Sbjct: 390 DEKLNKSSVFSDAVCEKTKPGNT 412

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 65.4 bits (158), Expect = 1e-11
 Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 6/179 (3%)

Query: 217 WKTYHIRIVAENEIGS--SEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPER 274
             TY +++ A           S    I T  E    PP +I+V   +QN + + W     
Sbjct: 173 ETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYV-LKWDYTYA 231

Query: 275 DHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNK 334
           +    V Q  +   K    +  + ++ +   +       +   ++     Y + VQA + 
Sbjct: 232 NMTFQV-QWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDG 290

Query: 335 LGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
                 SEE+K  T       PP         S +  +   +P       VI+ Y ++Y
Sbjct: 291 NNTSFWSEEIKFDTEIQAFLLPP--VFNIRSLSDSFHIYIGAPKQSGNTPVIQDYPLIY 347

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 60.8 bits (146), Expect = 5e-10
 Identities = 35/202 (17%), Positives = 63/202 (31%), Gaps = 11/202 (5%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
           ++   +RI AE E  +S   +  +     +A  GPP  + +EA D   + +  SP  +D 
Sbjct: 75  YEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGPP-EVHLEAED-KAIVIHISPGTKDS 131

Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
               + G    Y           E       E       +  L   T Y + V+A     
Sbjct: 132 VMWALDGLSFTYSLVIWKNSSGVEERI----ENIYSRHKIYKLSPETTYCLKVKAALLTS 187

Query: 337 --PGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKV-VY 393
              G  S      T       PP++   +      + + W          V   +     
Sbjct: 188 WKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYV-LKWDYTYANMTFQVQWLHAFLKR 246

Query: 394 GPSDTWYGDPKTDICTDIRASW 415
            P +  Y   +   C +++ + 
Sbjct: 247 NPGNHLYKWKQIPDCENVKTTQ 268

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 50.8 bits (120), Expect = 7e-07
 Identities = 28/255 (10%), Positives = 76/255 (29%), Gaps = 13/255 (5%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
            P  ++V+  D N + + W+  +    N     +   Y++T  D                
Sbjct: 10  SPQKVEVDIIDDNFI-LRWNRSDESVGNVT---FSFDYQKTGMDNWIKLSGCQNITST-- 63

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTI 370
           + + +   L  Y +  + ++A  +       E             PP+ +      +  I
Sbjct: 64  KCNFSSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVI 122

Query: 371 RVSWVSP--PLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIK 428
            +S  +    +   +G+   Y +V   + +   +   +I +  +   +SP        +K
Sbjct: 123 HISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSP---ETTYCLK 179

Query: 429 GYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQGRGYLVPRGGPPPCPGSDETL 488
               +          P         +        E+  Q + Y++ +        + +  
Sbjct: 180 VKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVL-KWDYTYANMTFQVQ 238

Query: 489 YSRHRGESDKCKNDR 503
           +     + +   +  
Sbjct: 239 WLHAFLKRNPGNHLY 253

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 66.6 bits (163), Expect = 6e-13
 Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 36/172 (20%)

Query: 47  LSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI 106
           +S   P    ++++ T++ GE + L C+  G     I W    K L      +Y    ++
Sbjct: 3   MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKEL--IQSRKY----KM 56

Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIG 166
             +G    L++   E+ D  ++TC                       N +  V  S+ + 
Sbjct: 57  SSDGRTHTLTVMTEEQEDEGVYTCIAT--------------------NEVGEVETSSKL- 95

Query: 167 EGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
                  +  +P       +    + +       ++L  + +G P P + W 
Sbjct: 96  ------LLQATPQFHPGYPL---KEKYYGAVGSTLRLHVMYIGRPVPAMTWF 138

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 13/90 (14%), Positives = 23/90 (25%), Gaps = 10/90 (11%)

Query: 50  APPEFEIKLR---NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI 106
           A P+F              G    L     G     + W    K L        T    I
Sbjct: 99  ATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQN--SENIT----I 152

Query: 107 LPNGVLSDLSIKR-TERGDSALFTCEIKSQ 135
                 + L +K    +  +  +  ++ + 
Sbjct: 153 ENTEHYTHLVMKNVQRKTHAGKYKVQLSNV 182

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 64.4 bits (157), Expect = 6e-13
 Identities = 18/111 (16%), Positives = 28/111 (25%), Gaps = 11/111 (9%)

Query: 247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
           +   PP H+       +  +V W           ++   V Y  +               
Sbjct: 6   SGLAPPRHLGFSDVSHDAARVFWEGA-----PRPVRLVRVTYVSSEGGHSGQT-EAP--- 56

Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPP 357
             G      L  L + T Y+V V  L   G               +P   P
Sbjct: 57  --GNATSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPSPSSGP 105

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 5/46 (10%)

Query: 352 TPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
           +   PP+    + ++    RV W   P       ++  +V Y  S+
Sbjct: 6   SGLAPPRHLGFSDVSHDAARVFWEGAP-----RPVRLVRVTYVSSE 46

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens} Length = 206

 Score = 67.0 bits (163), Expect = 6e-13
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 9/128 (7%)

Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEAT-DQNTLKVSWSPPER 274
           +   Y + I   + +GS + S    +L        PP+ +K E T +   LK+SW  P  
Sbjct: 78  LLSGYTMWIRINHSLGSLD-SPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVF 136

Query: 275 DHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNK 334
                 +Q + + Y  +  +  +    V     + K   ++L        Y+V V+    
Sbjct: 137 --PENNLQ-FQIRYGLSGKEVQWKMYEV----YDAKSKSVSLPVPDLCAVYAVQVRCKRL 189

Query: 335 LGPGPMSE 342
            G G  S 
Sbjct: 190 DGLGYWSN 197

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313

 Score = 68.4 bits (166), Expect = 7e-13
 Identities = 40/319 (12%), Positives = 87/319 (27%), Gaps = 34/319 (10%)

Query: 56  IKLRNQTSRRGEPSVLQCEAKGEKPIG-----ILWNMNNKRLDPKSDNRYTIREEILPNG 110
           I +       G+P    C  K           ILW +  +            ++ +    
Sbjct: 5   ISVSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGR------QQRLSDGT 58

Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
             S +++       + L         +         +G      +      +        
Sbjct: 59  QESIITLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLIC 118

Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPA-------PEIIWKTYHIR 223
                          + SF          D  L C+     +         ++++   I 
Sbjct: 119 QWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIW 178

Query: 224 IVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEAT------DQNTLKVSWSPPERDHW 277
           + AEN +G+S  S  + +   +     PP    ++ +          L++SW P +    
Sbjct: 179 VQAENALGTSM-SPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLH 237

Query: 278 NGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGP 337
               Q   + +K    +  +            +     L  L   T Y++ ++ +    P
Sbjct: 238 I--NQKCELRHKPQRGEASWALVGP----LPLEALQYELCGLLPATAYTLQIRCIRWPLP 291

Query: 338 GPMSE---EVKQYTAEGTP 353
           G  S+    ++  T E   
Sbjct: 292 GHWSDWSPSLELRTTERAA 310

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
             PT ++V      ++ VSW+PP     +  I GY + Y  ++        TV       
Sbjct: 3   DAPTDLQVTNVTDTSITVSWTPP-----SATITGYRITYTPSNGPGEPKELTVP-----P 52

Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGP 339
               +T++ L    +Y V V AL      P
Sbjct: 53  SSTSVTITGLTPGVEYVVSVYALKDNQESP 82

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114

 Score = 63.4 bits (154), Expect = 2e-12
 Identities = 28/116 (24%), Positives = 40/116 (34%), Gaps = 14/116 (12%)

Query: 249 SGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEE 308
           S  P  ++V A    +L +SW         G  Q Y + Y ET  + P    TV      
Sbjct: 4   SDVPRDLEVVAATPTSLLISWDSG-----RGSYQYYRITYGETGGNSPVQEFTVP----- 53

Query: 309 GKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEG----TPEQPPQDN 360
           G  H  T+S LK    Y++ V A+    P          +       T    P  +
Sbjct: 54  GPVHTATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKPSQH 109

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 67.2 bits (164), Expect = 2e-12
 Identities = 29/168 (17%), Positives = 51/168 (30%), Gaps = 36/168 (21%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
               F+     Q  + GE +V+ C+     P  I+W    + +  K D R+     +L N
Sbjct: 99  QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI----VLSN 154

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
                L I+  ++ D   + CE                                      
Sbjct: 155 NY---LQIRGIKKTDEGTYRCE-----------------------------GRILARGEI 182

Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
             K++ +  +     +      N TA   + + L C   G P P + W
Sbjct: 183 NFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSW 230

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 63.0 bits (153), Expect = 4e-11
 Identities = 26/171 (15%), Positives = 45/171 (26%), Gaps = 42/171 (24%)

Query: 52  PEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
            + +I         GE     C+  G+ K   I W   N      +  R ++      + 
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
               L+I      D+ ++ C                               +   G    
Sbjct: 63  T---LTIYNANIDDAGIYKCV-----------------------------VTAEDGTQS- 89

Query: 171 SKNVTLSPSNRVPARIASFND---NFTATYTEDIKLPCLTVGVPAPEIIWK 218
              V +     +  ++  F +          ED  + C  V    P IIWK
Sbjct: 90  EATVNVK----IFQKL-MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWK 135

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 50  APPEFEI--KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
            PP  +    + N T+  G+   L C+A G     + W  + + ++   +     +    
Sbjct: 193 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN--EEEDDEKHIFS 250

Query: 108 PNGVLSDLSIKRTERGDSALFTC 130
            +   S+L+I+  ++ D A + C
Sbjct: 251 DDS--SELTIRNVDKNDEAEYVC 271

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 65.6 bits (160), Expect = 2e-12
 Identities = 37/173 (21%), Positives = 57/173 (32%), Gaps = 38/173 (21%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
            PP F     +QT   G  +   C+A G+    I+WN   K++         I      +
Sbjct: 5   TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN--QRFEVI---EFDD 59

Query: 110 GVLSDLSIKRTERG-DSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
           G  S L I+      D A++ C                              AS N+GE 
Sbjct: 60  GSGSVLRIQPLRTPRDEAIYEC-----------------------------VASNNVGEI 90

Query: 169 QPSKNVTLSPSNRVPARIASFND---NFTATYTEDIKLPCLTVGVPAPEIIWK 218
             S  +T+   +++P    + +          T    + C   G P PEI W 
Sbjct: 91  SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWF 143

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 57.9 bits (140), Expect = 8e-10
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 47  LSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI 106
           +    P  ++  + +   R   + + C A G     I W  +   +D  ++N    +   
Sbjct: 104 IPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRS 163

Query: 107 LPNGVLSDLSIKRTERGDSALFTCE 131
              G    L I+++E  D   + C 
Sbjct: 164 ESIGA---LQIEQSEESDQGKYECV 185

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 68.8 bits (168), Expect = 2e-12
 Identities = 53/325 (16%), Positives = 91/325 (28%), Gaps = 85/325 (26%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
              PP      + +T   G    L+C A G     I W ++ K++   +++RY + + + 
Sbjct: 426 RFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKI--ANNDRYQVGQYVT 483

Query: 108 PNG-VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIG 166
            NG V+S L+I      D  L+ C                              A + +G
Sbjct: 484 VNGDVVSYLNITSVHANDGGLYKC-----------------------------IAKSKVG 514

Query: 167 EGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK-------- 218
             + S  + +         I            E + + C   G P   I+W+        
Sbjct: 515 VAEHSAKLNV----YGLPYIRQMEKK-AIVAGETLIVTCPVAGYPIDSIVWERDNRALPI 569

Query: 219 ----------TYHIRIV------------AENEIGSSEPSDTVTILTAEEAPSGPPTHIK 256
                     T  I  V            A+N+ G S    ++ +         P    +
Sbjct: 570 NRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSA-RGSLEVQVMVLPRIIPFAFEE 628

Query: 257 VEATDQNTLKVSWS-----PPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKE 311
             A     L +  S      P    W            +       L  T       G  
Sbjct: 629 GPAQVGQYLTLHCSVPGGDLPLNIDW----------TLDGQAISEDLGITTSRVGRRG-- 676

Query: 312 HHLTLSSLKTYTQYSVVVQALNKLG 336
             LT+ +++     +    A N  G
Sbjct: 677 SVLTIEAVEASHAGNFTCHARNLAG 701

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 32/188 (17%), Positives = 51/188 (27%), Gaps = 39/188 (20%)

Query: 49  SAPPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEIL 107
             P           ++ G+   L C   G   P+ I W ++ + +    D   T      
Sbjct: 617 VLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISE--DLGITTSRVGR 674

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
              VL+   I+  E   +  FTC                              A    G 
Sbjct: 675 RGSVLT---IEAVEASHAGNFTC-----------------------------HARNLAGH 702

Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAE 227
            Q +  + +     VP R      +       D K+ C   G P P++ WK        E
Sbjct: 703 QQFTTPLNV----YVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGE 758

Query: 228 NEIGSSEP 235
            +      
Sbjct: 759 YKDLKKSD 766

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 35/266 (13%), Positives = 66/266 (24%), Gaps = 91/266 (34%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
           AP   +I    QT   G P+V  C+  G     + W  + K +                 
Sbjct: 342 APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV----------- 390

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
                L I+  ++ D  ++ C                                 +    +
Sbjct: 391 -----LRIESVKKEDKGMYQCF-----------------------------VRNDRESAE 416

Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--------TYH 221
            S  + L      P  I       T      + L C+  G P PEI W+           
Sbjct: 417 ASAELKLGGRFDPP-VIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDR 475

Query: 222 IRI-----------------------------VAENEIGSSEPSDTVTILTA-------- 244
            ++                             +A++++G +E S  + +           
Sbjct: 476 YQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEK 535

Query: 245 EEAPSGPPTHIKVEATDQNTLKVSWS 270
           +   +G    +           + W 
Sbjct: 536 KAIVAGETLIVTCPVAGYPIDSIVWE 561

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 62.3 bits (151), Expect = 3e-10
 Identities = 29/179 (16%), Positives = 60/179 (33%), Gaps = 32/179 (17%)

Query: 45  LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAK---GEKPIGILWNMNNKRLDPKSDNRYT 101
            + +     +E  +  +   RG  +V++C       +    + W+ + +         Y 
Sbjct: 132 HVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGA-EYD 190

Query: 102 IREEILPNGVLSDLSIKRTERGDSA-LFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVT 160
            +  +LP+G   +L I+     D    + C  K +                       +T
Sbjct: 191 GKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHR-----------------------LT 224

Query: 161 ASTNIGEGQPSKNVTLSPSNRVPARIA-SFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
             T +   +    +T   S+ VP  ++ +  D  T + +  + L C   G P P   W 
Sbjct: 225 GETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWY 283

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 54.2 bits (130), Expect = 9e-08
 Identities = 11/85 (12%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
            PP + ++  ++   +G  + ++C+A G     + W         +  +        +  
Sbjct: 713 VPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEE 772

Query: 110 GVLSDLSIKRTERGDSALFTCEIKS 134
           G    L +   ++ +   + CE  +
Sbjct: 773 G---TLHVDNIQKTNEGYYLCEAIN 794

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 40/262 (15%), Positives = 61/262 (23%), Gaps = 71/262 (27%)

Query: 43  PPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTI 102
            P+  +        K   +T        L C A+G       W    +    K       
Sbjct: 240 EPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLND 299

Query: 103 REEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAS 162
           R +   +G    L IK     DS  + C + +                            
Sbjct: 300 RVK-QVSGT---LIIKDAVVEDSGKYLCVVNNS--------------------------- 328

Query: 163 TNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW----- 217
                G  S    L+     P          T  +       C   G P   + W     
Sbjct: 329 ----VGGESVETVLTV--TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK 382

Query: 218 ------KTYHIRIV-----------AENEIGSSEPSDTVTILTAEEAPS----------- 249
                     I  V             N+  S+E S  + +    + P            
Sbjct: 383 AIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETME 442

Query: 250 -GPPTHIKVEATDQNTLKVSWS 270
            GP   +K  A    T ++SW 
Sbjct: 443 PGPSVFLKCVAGGNPTPEISWE 464

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 48.4 bits (115), Expect = 5e-06
 Identities = 41/266 (15%), Positives = 73/266 (27%), Gaps = 87/266 (32%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
             P    ++  +    GE  ++ C   G     I+W  +N+ L          ++++ PN
Sbjct: 526 GLPYIR-QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINR------KQKVFPN 578

Query: 110 GVLSDLSIKRTER-GDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
           G    L I+  ER  D A +TC                              A    G  
Sbjct: 579 G---TLIIENVERNSDQATYTC-----------------------------VAKNQEGY- 605

Query: 169 QPSKNVTLSPSNRVPARIASF-NDNFTATYTEDIKLPCLTVGVPAP-EIIW--------- 217
               ++ +     V  RI  F  +   A   + + L C   G   P  I W         
Sbjct: 606 SARGSLEVQV--MVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISE 663

Query: 218 -----------KTYHIRI-------------VAENEIGSSEPSDTVTILTA--------- 244
                      +   + I              A N  G  + +  + +            
Sbjct: 664 DLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTD 723

Query: 245 EEAPSGPPTHIKVEATDQNTLKVSWS 270
           +    G    ++ +A      +V+W 
Sbjct: 724 KAFAQGSDAKVECKADGFPKPQVTWK 749

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 22/182 (12%), Positives = 44/182 (24%), Gaps = 43/182 (23%)

Query: 44  PLLLSSAPPEFEIKLRNQTS-RRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTI 102
           P       P F  +  N+        + ++C+A G     I+W  ++             
Sbjct: 31  PPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQ- 89

Query: 103 REEILPNGVLSDLSIK---RTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYV 159
              I  +G L     +     +   + ++ C                             
Sbjct: 90  ---ISSDGKLVFPPFRAEDYRQEVHAQVYAC----------------------------- 117

Query: 160 TASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCL---TVGVPAPEII 216
            A    G    S++V +     V     +  +           + CL    V      + 
Sbjct: 118 LARNQFGSII-SRDVHVRAV--VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVS 174

Query: 217 WK 218
           W 
Sbjct: 175 WH 176

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 62.4 bits (152), Expect = 3e-12
 Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 11/115 (9%)

Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
           +    P   P    +       L + WS P     +     Y +  +E ++   F     
Sbjct: 3   SGSSGP-SMPASPVLTKAGITWLSLQWSKPSGTP-SDEGISYILEMEEETSGYGFK---- 56

Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPP 357
              K +G++   T+ +L+  T+Y   V A N  G    SE V+  T    P+  P
Sbjct: 57  --PKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTT---CPDSGP 106

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGP 251
              Y  +++A N  G S PS+ V   T  ++    
Sbjct: 74  STKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSS 108

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314

 Score = 66.5 bits (161), Expect = 4e-12
 Identities = 29/168 (17%), Positives = 44/168 (26%), Gaps = 20/168 (11%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
           P T++ V   +  T+  +W+PPE    N       + Y     DK       +       
Sbjct: 6   PVTNLSVSVENLCTVIWTWNPPEGASSN-----CSLWYFSHFGDKQDKKIAPE------- 53

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTA-EGTPEQPPQDNTCTTLTSQT 369
                   L       V  Q        P     K  +  EG PE    +  C       
Sbjct: 54  TRRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSY 113

Query: 370 IRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVS 417
           ++ SW+             Y + Y          K   C +I      
Sbjct: 114 MKCSWLPGR---NTSPDTNYTLYYWHR----SLEKIHQCENIFREGQY 154

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314

 Score = 58.4 bits (140), Expect = 1e-09
 Identities = 28/181 (15%), Positives = 51/181 (28%), Gaps = 7/181 (3%)

Query: 219 TYHIRIVAENEIG-SSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHW 277
              +                   I   E  P    T ++    + + +K SW P      
Sbjct: 67  CLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRNTSP 126

Query: 278 NGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGP 337
           +     YY  +  +              +  G    LT     ++ Q+SV +   +  G 
Sbjct: 127 DTNYTLYY--WHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGK 184

Query: 338 GPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
              S  +   T+   P+ P       +  +  + V W +P           Y+V    S 
Sbjct: 185 IKPSFNIVPLTSRVKPDPP--HIKNLSFHNDDLYVQWENPQ--NFISRCLFYEVEVNNSQ 240

Query: 398 T 398
           T
Sbjct: 241 T 241

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 10/89 (11%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
            P  +     D +++K++W  P      G +  Y V Y         LF   D     G+
Sbjct: 4   RPKGLAFTDVDVDSIKIAWESP-----QGQVSRYRVTYSSPEDGIHELFPAPD-----GE 53

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGP 339
           E    L  L+  ++Y+V V AL+      
Sbjct: 54  EDTAELQGLRPGSEYTVSVVALHDDMESQ 82

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 64.4 bits (157), Expect = 4e-12
 Identities = 35/177 (19%), Positives = 57/177 (32%), Gaps = 35/177 (19%)

Query: 45  LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
           L     PP       +    +GEP+ L C+A+G     I W    +R++   D+  +   
Sbjct: 3   LRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRS-HR 61

Query: 105 EILPNGVL--SDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAS 162
            +LP+G L    +   R  R D  ++ C                              A 
Sbjct: 62  MLLPSGSLFFLRIVHGRKSRPDEGVYVCV-----------------------------AR 92

Query: 163 TNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPC-LTVGVPAPEIIWK 218
             +GE   S + +L  +  +         +      E   + C    G P P I WK
Sbjct: 93  NYLGEAV-SHDASLEVA-ILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWK 147

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 56.4 bits (136), Expect = 3e-09
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 10/92 (10%)

Query: 45  LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEA-KGEKPIGILWNMNNKRLDPKSDNRYTIR 103
           L ++    +F     +     GEP+V++C+  +G     I W  +   LD   D R    
Sbjct: 105 LEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDD-KDERI--- 160

Query: 104 EEILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135
              +  G    L I  T + D+  + C   + 
Sbjct: 161 --TIRGG---KLMITYTRKSDAGKYVCVGTNM 187

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100

 Score = 61.2 bits (149), Expect = 6e-12
 Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 10/94 (10%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
           PP +IKV      T  V+W PP        I+G  V +   +         +        
Sbjct: 4   PPFNIKVTNITLTTAVVTWQPPI-----LPIEGILVTFGRKNDPSDETTVDLT-----SS 53

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEV 344
              LTL++L+  T Y + + A N     P     
Sbjct: 54  ITSLTLTNLEPNTTYEIRIVARNGQQYSPPVSTT 87

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 67.5 bits (164), Expect = 6e-12
 Identities = 36/249 (14%), Positives = 64/249 (25%), Gaps = 74/249 (29%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKS------------D 97
             PE  ++  +      E   L C A       + W     +  P              D
Sbjct: 549 RGPEITLQ-PDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLD 607

Query: 98  NRYTIREEILPNGV--LSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNY 155
             + +   +  N    +  + +K     D   + C                         
Sbjct: 608 TLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCL------------------------ 643

Query: 156 IFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEI 215
                A     + +      L+   RV   I    +N T +  E I++ C   G P P+I
Sbjct: 644 -----AQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQI 698

Query: 216 IWK--------TYHIRI----------------------VAENEIGSSEPSDTVTILTAE 245
           +W            I +                       A + +G ++      I  A+
Sbjct: 699 MWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 758

Query: 246 EAPSGPPTH 254
           E  +   TH
Sbjct: 759 EKTNLERTH 767

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 63.6 bits (154), Expect = 9e-11
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 46  LLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREE 105
           +L    P     L NQT+  GE   + C A G  P  I+W  +N+ L    D+   +++ 
Sbjct: 661 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVE--DSGIVLKDG 718

Query: 106 ILPNGVLSDLSIKRTERGDSALFTCE 131
                   +L+I+R  + D  L+TC+
Sbjct: 719 N------RNLTIRRVRKEDEGLYTCQ 738

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 54.8 bits (131), Expect = 5e-08
 Identities = 72/555 (12%), Positives = 123/555 (22%), Gaps = 155/555 (27%)

Query: 47  LSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI 106
              A    +  +   T  + +  V+ C          L     ++      NR +     
Sbjct: 124 PFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRIS----W 179

Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIG 166
                    +I       + +  CE                             A  N  
Sbjct: 180 DSKKG---FTIPSYMISYAGMVFCE-----------------------------AKINDE 207

Query: 167 EGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK-------- 218
             Q    + +    R+   + S +     +  E + L C         I +         
Sbjct: 208 SYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKH 267

Query: 219 ---------------------TYHIRI-------------VAENEIGSSEPSDTVTILTA 244
                                   + I              A + + + + S  V +   
Sbjct: 268 QHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 327

Query: 245 EEAPSGPPTHIKVEATDQNTL----KVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFE 300
                G      VEAT    +    K    PP    W          YK      P    
Sbjct: 328 PFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKW----------YKN---GIP---- 370

Query: 301 TVDFSKEEGKEHHLTLSSLK-----TYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQ 355
            ++ +      H LT+  +       YT     V   N +      +E + +        
Sbjct: 371 -LESNHTIKAGHVLTIMEVSERDTGNYT-----VILTNPIS-----KEKQSHVVSLVVYV 419

Query: 356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTW----YGDPKTDICTDI 411
           PPQ           I    +  P+ +           YG + T     Y  P       I
Sbjct: 420 PPQ-----------IGEKSLISPVDS---------YQYGTTQTLTCTVYAIPPPHH---I 456

Query: 412 RASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQGRGY 471
              W                    P + W         +     + +    E K++    
Sbjct: 457 HWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVST 516

Query: 472 LVPRGGPPPCPGSDETLY----SRHRGESDKCKNDRV--PARIASFNDNFTATYTEDIKL 525
           LV          +   LY        G  ++  +  V     I    D    T  E + L
Sbjct: 517 LV------IQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDM-QPTEQESVSL 569

Query: 526 PCLTVGVPAPEIIWK 540
            C         + W 
Sbjct: 570 WCTADRSTFENLTWY 584

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 48.2 bits (114), Expect = 5e-06
 Identities = 29/201 (14%), Positives = 54/201 (26%), Gaps = 36/201 (17%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
            P   I+    T +      + C   G++ +  LW   N +   +     T   +     
Sbjct: 31  LPRLSIQKDILTIKANTTLQITCR--GQRDLDWLW--PNNQSGSEQRVEVTECSD---GL 83

Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
               L+I +    D+  + C  +   ++S    Y                 S  I     
Sbjct: 84  FCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVY------------VQDYRSPFIASVSD 131

Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYH-IRIVAENE 229
              V                   T    + + +PCL         +   Y   R V +  
Sbjct: 132 QHGVV----------------YITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGN 175

Query: 230 IGSSEPSDTVTILTAEEAPSG 250
             S +     TI +   + +G
Sbjct: 176 RISWDSKKGFTIPSYMISYAG 196

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 21/187 (11%), Positives = 45/187 (24%), Gaps = 8/187 (4%)

Query: 52  PEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
            E  +     + + G    L C       P  I W    +       ++        P  
Sbjct: 424 GEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYP-- 481

Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
                S++  + G+         +      +            + ++   A   +G G+ 
Sbjct: 482 CEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGER 541

Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEI 230
             +  +         I    D    T  E + L C         + W     + +  +  
Sbjct: 542 VISFHV----TRGPEITLQPDM-QPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVG 596

Query: 231 GSSEPSD 237
               P  
Sbjct: 597 ELPTPVC 603

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 64.5 bits (157), Expect = 6e-12
 Identities = 30/184 (16%), Positives = 57/184 (30%), Gaps = 50/184 (27%)

Query: 44  PLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIR 103
           PL      P       +   ++ EP+ L C+ +G+    I W  + + +       + + 
Sbjct: 2   PLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRV- 60

Query: 104 EEILPNGVLS-DLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAS 162
                +G L    +++  +  D   + C                              A 
Sbjct: 61  --QFKDGALFFYRTMQGKKEQDGGEYWC-----------------------------VAK 89

Query: 163 TNIGEGQPSKNVTLSPSNRVPARIASFNDNF-------TATYTEDIKLPCLTV-GVPAPE 214
             +G+   S++ +L        +IA   D+F            E   L C    G+P P 
Sbjct: 90  NRVGQAV-SRHASL--------QIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPT 140

Query: 215 IIWK 218
           +IW 
Sbjct: 141 LIWI 144

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 45  LLLSSAPPEFEIKLRNQTSRRGEPSVLQC-EAKGEKPIGILWNMNNKRLDPKSDNRYTI- 102
           L ++    +F ++ ++    +GE ++L+C   KG     ++W  +   LD      +   
Sbjct: 102 LQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGAS 161

Query: 103 -REEILPNGVLSDLSIKRTERGDSALFTCE 131
            R  I+  G   +L I   E  D   + C 
Sbjct: 162 SRVRIVDGG---NLLISNVEPIDEGNYKCI 188

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104

 Score = 61.3 bits (149), Expect = 6e-12
 Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 13/108 (12%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
            P+ I+V+     T  ++W PP     +  + G+ + Y             +        
Sbjct: 5   APSQIEVKDVTDTTALITWMPP-----SQPVDGFELTYGIKDVPGDRTTIDLT-----ED 54

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPG-PMSEEVKQYTAEGTPEQPP 357
           E+  ++ +LK  T+Y V + +        P  E     T      +  
Sbjct: 55  ENQYSIGNLKPDTEYEVSLISRRGDMSSNPAKETFT--TGLAAALEHH 100

>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 60.9 bits (147), Expect = 2e-11
 Identities = 31/136 (22%), Positives = 42/136 (30%), Gaps = 19/136 (13%)

Query: 232 SSEPSDTVTILTAEEAPSGPPTHIKVEA-TDQNTLKVSWSPPERD---HWNGV-IQGYYV 286
            S  S  V   T    P  PP  + V+A     T++VSW PP        NG  + GY V
Sbjct: 1   GSSGSSGVEFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGV 60

Query: 287 ---GYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEE 343
              G +      P                 + L  L++     V V+ L+  G    S  
Sbjct: 61  YAKGQRVAEVIFP-----------TADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAV 109

Query: 344 VKQYTAEGTPEQPPQD 359
                    P  P   
Sbjct: 110 AAVPPELLVPPTPHPS 125

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 4/83 (4%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           SS  P FE+KL++     G P    C   G     I W  + K++ P   + YTI+ +  
Sbjct: 5   SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISP-KSDHYTIQRD-- 61

Query: 108 PNGVLSDLSIKRTERGDSALFTC 130
            +G  S L    +   D   +T 
Sbjct: 62  LDGTCS-LHTTASTLDDDGNYTI 83

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 63.8 bits (155), Expect = 3e-11
 Identities = 33/243 (13%), Positives = 62/243 (25%), Gaps = 61/243 (25%)

Query: 46  LLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEK----------PIGILWNMNNKRLDPK 95
           L+  A  E  +++  + +       +Q  A+G +           + + W+ N   +   
Sbjct: 93  LVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY- 151

Query: 96  SDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNY 155
             +R          G    L I      D   +  E+   K   Q+              
Sbjct: 152 -SDRVKT----GVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQK------------TV 194

Query: 156 IFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEI 215
                A                        +    D  T    + + L C   G P PE+
Sbjct: 195 DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEV 254

Query: 216 IWK----------TYHIR-----------------------IVAENEIGSSEPSDTVTIL 242
            W             +++                       +V +N+ GS     TV++ 
Sbjct: 255 SWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314

Query: 243 TAE 245
             E
Sbjct: 315 IPE 317

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 50.7 bits (121), Expect = 5e-07
 Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 5/106 (4%)

Query: 30  FDPELLNPSFNGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNN 89
           +D             +   +            T + G+   L C   G+ P  + W  N 
Sbjct: 201 YDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNE 260

Query: 90  KRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135
           K L   SD+   ++ E          +I      DS  +   +K++
Sbjct: 261 KAL--ASDDHCNLKFEAGRTAY---FTINGVSTADSGKYGLVVKNK 301

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 26/257 (10%), Positives = 69/257 (26%), Gaps = 67/257 (26%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPI-GILWNMNNKRLDPKSDNRYTIREEILPN 109
            P F   L  + +      +L+C+    K    I+W  + + +    D ++        +
Sbjct: 7   GPHFVEYLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISV--DEKHDF-----KD 58

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNI-GEG 168
           G+ + L I    + D+ ++   +K                    +      +   +  E 
Sbjct: 59  GICT-LLITEFSKKDAGIYEVILK--------------------DDRGKDKSRLKLVDEA 97

Query: 169 QPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK---------- 218
                + +     + A          +T         +T  V   ++ W           
Sbjct: 98  FKELMMEVCKKIALSATDLK----IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD 153

Query: 219 ---------TYHIRI-------------VAENEIGSSEPSDTVTILTAEEAPSGPPTHIK 256
                       ++I                +     + +  ++    +EA +      +
Sbjct: 154 RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQ 213

Query: 257 VEATDQNTLKVSWSPPE 273
               ++N  +V    P+
Sbjct: 214 AAIAEKNRARVLGGLPD 230

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 59.7 bits (145), Expect = 4e-11
 Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 8/126 (6%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S     +   + P GPP  +K+E      + ++W+PP+ D  N  I GY +   +
Sbjct: 1   GSSGSSGASIDIQIIDRP-GPPQIVKIEDVWGENVALTWTPPKDDG-NAAITGYTIQKAD 58

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
             + + F         E       T++ L    +Y   V + N  G    +   K+    
Sbjct: 59  KKSMEWFTV------IEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVI 112

Query: 351 GTPEQP 356
               + 
Sbjct: 113 ARDGKI 118

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 59.5 bits (144), Expect = 4e-11
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 14/114 (12%)

Query: 246 EAPSGPPT--HIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVD 303
           EA    P+   I  + +   + K+S +    D     I  Y V Y+    +  +L + V 
Sbjct: 3   EASMREPSPPSIHGQPSSGKSFKLSITKQ--DDGGAPILEYIVKYRSKDKEDQWLEKKVQ 60

Query: 304 FSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPP 357
                G + H+ L  L+    Y V + A N+LG    +           P +P 
Sbjct: 61  -----GNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFS-----MPPKPN 104

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 1/38 (2%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTH 254
              Y ++I A N +G SEP+         +       H
Sbjct: 74  TMGYEVQITAANRLGYSEPTV-YEFSMPPKPNIIKDHH 110

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127

 Score = 59.5 bits (144), Expect = 4e-11
 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 12/130 (9%)

Query: 232 SSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKET 291
           S    + +  LTA   P+ P    ++     +T+ V W   +       I  Y + Y   
Sbjct: 3   SGSSGEGLDYLTA---PNPPSIREELCTASHDTITVHWISDD----EFSISSYELQYTIF 55

Query: 292 STDKPFLFETVDFSK----EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQY 347
           +    F+               K++H T+  L++ T+Y  +V+A+N+ G    SE  +  
Sbjct: 56  TGQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRN-SEPTRLK 114

Query: 348 TAEGTPEQPP 357
           T     +  P
Sbjct: 115 TNSQPFKSGP 124

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 61.4 bits (149), Expect = 4e-11
 Identities = 34/221 (15%), Positives = 60/221 (27%), Gaps = 59/221 (26%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGE--KPIGILWNMNNKRLDPKSDNRYTIREEILP 108
            P    +      + G+  VL C+        +   W +N   +    D R   R     
Sbjct: 8   DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKR---RFVSQT 64

Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
           NG   +L I   E  D   ++C + S            S  K   +    +         
Sbjct: 65  NG---NLYIANVEASDKGNYSCFVSS-----------PSITKSVFSKFIPLIPIPERTTK 110

Query: 169 QPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--------TY 220
               ++ +   +              A   +++ L C  +G P P+I W+        T 
Sbjct: 111 PYPADIVVQFKDV------------YALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA 158

Query: 221 HIRI--------------------VAENEIGSSEPSDTVTI 241
            I                       AEN  G  +    + +
Sbjct: 159 EISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 10/89 (11%)

Query: 43  PPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTI 102
           P       P +  ++ ++  +  G+   L+C A G     I W    + +          
Sbjct: 105 PERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPST------- 157

Query: 103 REEILPNGVLSDLSIKRTERGDSALFTCE 131
            E      V   L I   +  D  ++ CE
Sbjct: 158 AEISTSGAV---LKIFNIQLEDEGIYECE 183

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 63.4 bits (154), Expect = 6e-11
 Identities = 22/175 (12%), Positives = 45/175 (25%), Gaps = 24/175 (13%)

Query: 46  LLSSAPPEFEIKLRNQTSRRGEPSVLQCE-AKGEKPIGILWNMNNKRLDPKSD-NRYTIR 103
              +       K   +T   G P  L C          I W       DP +D   +  R
Sbjct: 95  FRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRR 154

Query: 104 EEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAST 163
               P+G L    + + +  D   + C  K+  +  + +  E       ++         
Sbjct: 155 ITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKD--------- 205

Query: 164 NIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
                        +   +        + +  A   +   + C+    P     + 
Sbjct: 206 -------------NSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYF 247

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 59.2 bits (143), Expect = 2e-09
 Identities = 28/171 (16%), Positives = 46/171 (26%), Gaps = 41/171 (23%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILP 108
             P  + +      R   P+VL+C  +G  + +   W  + K  + +  N          
Sbjct: 5   KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL----RKD 60

Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
            G    L   R +  D   + C                              A T  G  
Sbjct: 61  EGS---LVFLRPQASDEGHYQC-----------------------------FAETPAGVA 88

Query: 169 QPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPC-LTVGVPAPEIIWK 218
             S+ ++   +        +     T       +L C L    P P I WK
Sbjct: 89  S-SRVISFRKT--YLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWK 136

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 26/170 (15%), Positives = 54/170 (31%), Gaps = 37/170 (21%)

Query: 49  SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
              P  +   ++  ++ G+ +++ C           +  N K ++   ++R T R     
Sbjct: 210 KGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRIT-RHNRTS 268

Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
                 L  K T   D  ++TCE                                 +G+ 
Sbjct: 269 GKR---LLFKTTLPEDEGVYTCE-----------------------------VDNGVGKP 296

Query: 169 QPSKNVTLSPSNRVPARIAS-FNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
           Q   ++ L+       +              +D+ +PC   G+PAP ++W
Sbjct: 297 Q-KHSLKLTV--VSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVW 343

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 12/83 (14%)

Query: 50  APPEFEIKLRNQTS-RRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
           + P++E K       ++G+   + C+  G     ++W+ N K L   S  R T+ +    
Sbjct: 307 SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL---SGGRATVTD---- 359

Query: 109 NGVLSDLSIKRTERGDSALFTCE 131
               S L IK  + GD   + C 
Sbjct: 360 ----SGLVIKGVKNGDKGYYGCR 378

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 58.1 bits (141), Expect = 6e-11
 Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 3/89 (3%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           SS P      L +Q    G+   +  E   E    ++W  N   L    ++ +  R    
Sbjct: 5   SSGPVLIVTPLEDQQVFVGDRVEMAVEVSEEGAQ-VMWMKNGVELTR--EDSFKARYRFK 61

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQK 136
            +G    L      + D   +       +
Sbjct: 62  KDGKRHILIFSDVVQEDRGRYQVITNGGQ 90

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 58.6 bits (142), Expect = 6e-11
 Identities = 22/93 (23%), Positives = 30/93 (32%), Gaps = 7/93 (7%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           SS   E    + + T +  E +V +CE   EK     W  N   + P    R TI     
Sbjct: 5   SSGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRP--SKRITISHV-- 59

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140
             G    L I      D   +T       +S  
Sbjct: 60  --GRFHKLVIDDVRPEDEGDYTFVPDGYALSLS 90

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 58.5 bits (142), Expect = 7e-11
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 6/86 (6%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
            S+ P+      +Q  R GE   L  +  G +PI   W    K++         +     
Sbjct: 4   GSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQE--SEHMKVENS-- 59

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIK 133
                S L+I    +     +T  ++
Sbjct: 60  --ENGSKLTILAARQEHCGCYTLLVE 83

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 58.3 bits (141), Expect = 8e-11
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 45  LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
           L     PP       +    +GEP+ L C+A+G     I W    +R++   D+  +   
Sbjct: 3   LRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRS-HR 61

Query: 105 EILPNGVLSDLSIK--RTERGDSALFTCE 131
            +LP+G L  L I   R  R D  ++ C 
Sbjct: 62  MLLPSGSLFFLRIVHGRKSRPDEGVYVCV 90

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 58.1 bits (140), Expect = 1e-10
 Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 9/114 (7%)

Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
           +         + + V     ++L+++W  P      G    + + +   S          
Sbjct: 3   SGSSGSRPRLSQLSVTDVTTSSLRLNWEAPP-----GAFDSFLLRFGVPSPSTLEPHPRP 57

Query: 303 DFSKE---EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
              +E    G  H   L  L++ T YS+ +  L        S +    T  G  
Sbjct: 58  LLQRELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKAD-SIQGTARTLSGPS 110

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 41/264 (15%), Positives = 65/264 (24%), Gaps = 64/264 (24%)

Query: 51  PPEFEIKLRNQTS-RRGEPSVLQCEA-KGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
             EF  + R+      G   +  C        +   W +N       +D R   R     
Sbjct: 100 LQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGR---RFVSQT 156

Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
            G   +L I +TE  D   ++C   S      +                     +   + 
Sbjct: 157 TG---NLYIAKTEASDLGNYSCFATSHIDFITK---------------------SVFSKF 192

Query: 169 QPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK---------- 218
                         P+  A F  +  A   + + L C   G P P+I W+          
Sbjct: 193 SQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW 252

Query: 219 ---TYHIRI-------------VAENEIGSSEPSDTVTILTAEEAPS--GPPTHIKVEAT 260
                 + I              AEN  G       + I      P      T  + +  
Sbjct: 253 LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII---HAQPDWLDVITDTEADIG 309

Query: 261 DQNTL--KVSWSPPERDHW--NGV 280
                    S  P     W  +G 
Sbjct: 310 SDLRWSCVASGKPRPAVRWLRDGQ 333

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 10/82 (12%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
           A P++   + +  +  G      C A G+    + W  + + L     NR  +       
Sbjct: 293 AQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS--QNRIEV-----SG 345

Query: 110 GVLSDLSIKRTERGDSALFTCE 131
           G    L   +    DS ++ C 
Sbjct: 346 GE---LRFSKLVLEDSGMYQCV 364

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 33/174 (18%), Positives = 46/174 (26%), Gaps = 42/174 (24%)

Query: 49  SAPPEFEIKLRNQTSRRG---EPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREE 105
           S  P FE +  +     G   E   L C A+   P    W MN   L    D+RY     
Sbjct: 2   SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYR---- 57

Query: 106 ILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNI 165
            L  G L  +     +  D+  + C                              A+   
Sbjct: 58  -LVAGDL--VISNPVKAKDAGSYQC-----------------------------VATNAR 85

Query: 166 GEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPC-LTVGVPAPEIIWK 218
           G    S+  +L     +    A   D    T    +   C      PA    W 
Sbjct: 86  GT-VVSREASLRFG-FLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWL 137

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 47.2 bits (112), Expect = 8e-06
 Identities = 25/170 (14%), Positives = 46/170 (27%), Gaps = 45/170 (26%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
             AP        +  +  G+   L+C A G     I W    ++LD    +++     + 
Sbjct: 204 QYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKW----RKLDGSQTSKW-----LS 254

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
              +   L I+  +  D   + CE                             A    G 
Sbjct: 255 SEPL---LHIQNVDFEDEGTYECE-----------------------------AENIKGR 282

Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
                 + +               +  A    D++  C+  G P P + W
Sbjct: 283 DTYQGRIII----HAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRW 328

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 61.9 bits (150), Expect = 2e-10
 Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 31/177 (17%)

Query: 46  LLSSAPPEFEIKLRNQTSRRGEPSVLQCEAK---GEKPIGILWNMNNKRLDPKSDNRYTI 102
           + +     +E  +  +   RG  +V++C       +    + W   ++  +      Y  
Sbjct: 98  VRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSW-HTDEEENYFPGAEYDG 156

Query: 103 REEILPNGVLSDLSIKRTERGDS-ALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTA 161
           +  +LP+G   +L I+     D    + C  K +                       +T 
Sbjct: 157 KYLVLPSG---ELHIREVGPEDGYKSYQCRTKHR-----------------------LTG 190

Query: 162 STNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
            T +   +    +T   S+  P   A             I L C   G PAP   W 
Sbjct: 191 ETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWY 247

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 16/81 (19%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
           AP   +I    QT   G P+V  C+  G     + W  + K +                 
Sbjct: 306 APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE------------- 352

Query: 110 GVLSDLSIKRTERGDSALFTC 130
              S L I+  ++ D  ++ C
Sbjct: 353 ---SVLRIESVKKEDKGMYQC 370

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 48.0 bits (114), Expect = 5e-06
 Identities = 26/170 (15%), Positives = 39/170 (22%), Gaps = 37/170 (21%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           SSAP    +  +           L C A+G       W    +    K       R    
Sbjct: 209 SSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDR-VKQ 267

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
            +G    L IK     DS  + C                               + ++G 
Sbjct: 268 VSGT---LIIKDAVVEDSGKYLCV-----------------------------VNNSVGG 295

Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
                 +T+      P          T  +       C   G P   + W
Sbjct: 296 ESVETVLTV----TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSW 341

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 44.2 bits (104), Expect = 7e-05
 Identities = 25/199 (12%), Positives = 49/199 (24%), Gaps = 47/199 (23%)

Query: 51  PPEFEIKLRNQTS-RRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
            P F  +  N+        + ++C+A G     I+W  ++                I  +
Sbjct: 3   GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQ----ISSD 58

Query: 110 GVL---SDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIG 166
           G L      +    +   + ++ C                              A    G
Sbjct: 59  GKLVFPPFRAEDYRQEVHAQVYAC-----------------------------LARNQFG 89

Query: 167 EGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCL---TVGVPAPEIIWKTYHIR 223
               S++V +     V     +  +           + CL    V      + W      
Sbjct: 90  SII-SRDVHVRAV--VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWH----T 142

Query: 224 IVAENEIGSSEPSDTVTIL 242
              EN    +E      +L
Sbjct: 143 DEEENYFPGAEYDGKYLVL 161

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 8/83 (9%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           SS PP       NQT      ++L+C+A G+    I W        P  D R T    I 
Sbjct: 5   SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTF-PGRDPRAT----IQ 59

Query: 108 PNGVLSDLSIKRTERGDSALFTC 130
             G    L IK     D+  +TC
Sbjct: 60  EQG---TLQIKNLRISDTGTYTC 79

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 49  SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
           S+      +L + T+  GE   L+CE   +    + W  N + + P   +RY IR E   
Sbjct: 5   SSGIMVTKQLEDTTAYCGERVELECEVSEDDAN-VKWFKNGEEIIPGPKSRYRIRVE--- 60

Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQK 136
            G    L I+   + D+A ++      +
Sbjct: 61  -GKKHILIIEGATKADAAEYSVMTTGGQ 87

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 8/83 (9%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           SS PP       NQT       VL C A G     ILW  +   +    D+R       L
Sbjct: 5   SSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVST-QDSRIK----QL 59

Query: 108 PNGVLSDLSIKRTERGDSALFTC 130
            NG    L I+  + GD+  +TC
Sbjct: 60  ENG---VLQIRYAKLGDTGRYTC 79

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
            P ++ V    +++L++SW+ P     +     + + Y+E+      +  TV      G 
Sbjct: 4   APKNLVVSEVTEDSLRLSWTAP-----DAAFDSFMIQYQESEKVGEAINLTVP-----GS 53

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGP 339
           E    L+ LK  T+Y+V +  +       
Sbjct: 54  ERSYDLTGLKPGTEYTVSIYGVKGGHRSN 82

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 59.1 bits (143), Expect = 3e-10
 Identities = 34/240 (14%), Positives = 64/240 (26%), Gaps = 57/240 (23%)

Query: 46  LLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREE 105
            L     +  +   ++    G+   L C A G   +   W   NK +   +         
Sbjct: 13  GLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT-------- 64

Query: 106 ILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNI 165
                  S+L        D+  + C + +               +  Q       +  ++
Sbjct: 65  -------SELIFNAVHVKDAGFYVCRVNN-----------NFTFEFSQW------SQLDV 100

Query: 166 GEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW-------- 217
            +   S   ++   +    +I     +        + L C+ VG P P   W        
Sbjct: 101 CDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT 160

Query: 218 ----KTYHIRIV-----------AENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQ 262
               K Y +  V             N+  S +      I+        P    K + TDQ
Sbjct: 161 HETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPD--NKEQTTDQ 218

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 14/95 (14%), Positives = 25/95 (26%), Gaps = 15/95 (15%)

Query: 37  PSFNGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKS 96
           P         +S +  +  ++  +Q    G   VLQC A G       W  N   L  ++
Sbjct: 104 PESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET 163

Query: 97  DNRYTIREEILPNGVLSDLSIKRTERGDSALFTCE 131
                               +   +      + C 
Sbjct: 164 KKL---------------YMVPYVDLEHQGTYWCH 183

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 59.2 bits (143), Expect = 4e-10
 Identities = 26/181 (14%), Positives = 44/181 (24%), Gaps = 39/181 (21%)

Query: 43  PPLLLSSAPPEF----EIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDN 98
           P   + +  P +     +  +            +C A G     I W  N +      ++
Sbjct: 3   PDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRG--EH 60

Query: 99  RYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFY 158
           R    +          L ++     D   +TC                            
Sbjct: 61  RIGGIKLRHQQWS---LVMESVVPSDRGNYTC---------------------------- 89

Query: 159 VTASTNIGEGQPSKNVT-LSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
                  G  + +  +  L  S   P   A    N TA    D++  C       P I W
Sbjct: 90  -VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 148

Query: 218 K 218
            
Sbjct: 149 L 149

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 6/90 (6%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILW----NMNNKRLDPKSDNRYTIR 103
              P        NQT+  G      C+   +    I W     +N  ++ P      T+ 
Sbjct: 111 PHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVL 170

Query: 104 EEILPNGVLSD--LSIKRTERGDSALFTCE 131
           +  +   V +D  L +      D   + C 
Sbjct: 171 KSWISESVEADVRLRLANVSERDGGEYLCR 200

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 56.3 bits (136), Expect = 4e-10
 Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 49  SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
              P F  K +++    G+   L+C+     P  + W  NN+ +   + +R ++ ++   
Sbjct: 13  KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQF-NTDRISLYQD--N 69

Query: 109 NGVLSDLSIKRTERGDSALFTCE 131
            G ++ L IK   + D+  +T  
Sbjct: 70  TGRVT-LLIKDVNKKDAGWYTVS 91

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 60.9 bits (147), Expect = 5e-10
 Identities = 40/319 (12%), Positives = 73/319 (22%), Gaps = 80/319 (25%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNMNNKRLDPKSDNRYTIREEILPN 109
               +  L     + GEP  ++C+A       G+ W + NK L+  +    +        
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTM 286

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
             +    +    R D+  +TC        S  +T               +     I    
Sbjct: 287 IRILFAFVSSVARNDTGYYTCSSSKHPSQSALVT---------------IVEKGFI---- 327

Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK----------- 218
                             + ++++     E+          P     W            
Sbjct: 328 ---------------NATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQK 372

Query: 219 ----TYHIRI-------------VAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATD 261
                Y I                AEN+        T+ I          P  +   +  
Sbjct: 373 GLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRR-------KPQVLAEASAS 425

Query: 262 QNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKT 321
           Q +      P     W           K  +  +       +             SS   
Sbjct: 426 QASCFSDGYPLPSWTW------KKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLN 479

Query: 322 YTQ----YSVVVQALNKLG 336
            ++    + V   A N LG
Sbjct: 480 MSEAIKGFLVKCCAYNSLG 498

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 19/171 (11%), Positives = 35/171 (20%), Gaps = 41/171 (23%)

Query: 47  LSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI 106
           L         +             LQ        I  LW   +  L+ +       R   
Sbjct: 44  LRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRG-- 101

Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIG 166
                +  + I +     +  +                                  +   
Sbjct: 102 -----VVSMVILKMTETQAGEYLL-----------------------------FIQSEAT 127

Query: 167 EGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
                  V++    R           F     +D  L C++  VP P + W
Sbjct: 128 NYTILFTVSI----RNTLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEW 173

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 17/171 (9%), Positives = 33/171 (19%), Gaps = 53/171 (30%)

Query: 50  APPEFEIKLRNQ--TSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
                     ++     + E        K    I   W  + K    +           L
Sbjct: 323 EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQK--------GL 374

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
            NG    +S     +     +                                A  +  +
Sbjct: 375 DNG--YSISKFCNHKHQPGEYIF-----------------------------HAENDDAQ 403

Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
                 + +    R   ++               +  C + G P P   WK
Sbjct: 404 FTKMFTLNI----RRKPQV--------LAEASASQASCFSDGYPLPSWTWK 442

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 55.8 bits (135), Expect = 5e-10
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           SS P      L +Q    GE   L+CE        + W  + K +  +   +Y +  E  
Sbjct: 5   SSGPAAIIKPLEDQWVAPGEDVELRCELSRA-GTPVHWLKDRKAI--RKSQKYDVVCE-- 59

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140
             G ++ L I+     D+  +TCE+++ K ++ 
Sbjct: 60  --GTMAMLVIRGASLKDAGEYTCEVEASKSTAS 90

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 8/123 (6%)

Query: 234 EPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETST 293
               +       + P GPP+  +V    +N++ +SW P            Y +     S 
Sbjct: 2   SSGSSGKNYDLSDLP-GPPSKPQVTDVTKNSVTLSWQPGT-PG-TLPASAYIIEAFSQSV 58

Query: 294 DKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
              +  +TV       K    T+  L+  T Y  +V+A+N  G    S        + + 
Sbjct: 59  SNSW--QTVA---NHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSG 113

Query: 354 EQP 356
              
Sbjct: 114 PSS 116

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 7/35 (20%), Positives = 13/35 (37%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGP 251
              Y   + A N  G S+PS     +  +++    
Sbjct: 82  NTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPSS 116

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 55.8 bits (135), Expect = 5e-10
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)

Query: 49  SAPPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           S+ P     L++ T      +    +A GE +P   +W  + K +      +Y + E+  
Sbjct: 4   SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPT-AIWTKDGKAI--TQGGKYKLSED-- 58

Query: 108 PNGVLSDLSIKRTERGDSALFTCE 131
             G    L I +T+  DS L+TC 
Sbjct: 59  -KGGFF-LEIHKTDTSDSGLYTCT 80

>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} Length = 317

 Score = 59.9 bits (144), Expect = 6e-10
 Identities = 24/132 (18%), Positives = 39/132 (29%), Gaps = 11/132 (8%)

Query: 240 TILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLF 299
            +L  E+    PP +  ++ T    + + W P        V   Y V       D     
Sbjct: 3   DLLPDEKISLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKED----- 57

Query: 300 ETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSE-EVKQYTAEGTPEQPPQ 358
                  E        ++ L      SV     N       S    + +   G+P     
Sbjct: 58  -----DYETRITESKAVTILHMGFSASVRTILQNDHSLLASSWASAELHAPPGSPGTSIV 112

Query: 359 DNTCTTLTSQTI 370
           + TCTT T++  
Sbjct: 113 NLTCTTNTTEDN 124

>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} Length = 317

 Score = 47.6 bits (112), Expect = 6e-06
 Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 12/115 (10%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH 276
                + +   ++  +  P D +  L A +  + PP ++  E      + + W  P    
Sbjct: 190 RDWLAVLVNGSSKHSAIRPFDQLFALHAIDQIN-PPLNVTAEIE-GTRMSIQWEKPV-SA 246

Query: 277 WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQA 331
           +      Y V    T              + E    +  +S +   ++Y V V+A
Sbjct: 247 FPIHCFDYEVKIHNTRNGY---------LQIEKLMTNAFISIIDDLSKYDVQVRA 292

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 55.4 bits (134), Expect = 7e-10
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           SS P  F+  L++     G  + L+C         + W   N  L  +  ++Y++R+E  
Sbjct: 5   SSGPVRFQEALKDLEVLEGGAATLRCVLSSV-AAPVKWCYGNNVL--RPGDKYSLRQE-- 59

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKIS 138
             G + +L ++     DS  ++C    Q  S
Sbjct: 60  --GAMLELVVRNLRPQDSGRYSCSFGDQTTS 88

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 55.7 bits (134), Expect = 7e-10
 Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 9/111 (8%)

Query: 247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKP-------FLF 299
             + PPT   V      ++ + W  P  D     I  + V Y+     K          +
Sbjct: 1   GSTYPPTPPNVTRLSDESVMLRWMVPRND--GLPIVIFKVQYRMVGKRKNWQTTNDNIPY 58

Query: 300 ETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
               ++ E GK    +++ LK    Y   + A+        S    ++  +
Sbjct: 59  GKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ 109

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 55.5 bits (134), Expect = 7e-10
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 7/90 (7%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIG-ILWNMNNKRLDPKSDNRYTIREEI 106
           SS       +L+      GE    +C    E      +W +  K +   S +R+    + 
Sbjct: 5   SSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTV--GSSSRFQATRQ- 61

Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIKSQK 136
              G    L ++     D+      ++   
Sbjct: 62  ---GRKYILVVREAAPSDAGEVVFSVRGLT 88

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 55.0 bits (133), Expect = 8e-10
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 7/89 (7%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           SS    F  +L N        +V  C+ +      + W      L  ++  ++   +E  
Sbjct: 5   SSGANCFTEELTNLQVEEKGTAVFTCKTEHPAAT-VTWRKGLLEL--RASGKHQPSQE-- 59

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQK 136
             G+   L+I   E+ DS  +TC+I   +
Sbjct: 60  --GLTLRLTISALEKADSDTYTCDIGQAQ 86

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 55.4 bits (134), Expect = 8e-10
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 46  LLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREE 105
           +L    P     L NQT+  GE   + C A G  P  I+W  +N+ L    D+   ++  
Sbjct: 5   VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETL--VEDSGIVLK-- 60

Query: 106 ILPNGVLSDLSIKRTERGDSALFTCE 131
              +G  + L+I+R  + D  L+TC+
Sbjct: 61  ---DGNRN-LTIRRVRKEDEGLYTCQ 82

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 31/201 (15%), Positives = 59/201 (29%), Gaps = 37/201 (18%)

Query: 49  SAPPEFEIK-LRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           + PP    +  ++      +  +++CEAKG       W  N++  +   D R ++R    
Sbjct: 14  TQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMR---R 70

Query: 108 PNGVL-SDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIG 166
            +G L  D             + C                              A    G
Sbjct: 71  RSGTLVIDFRSGGRPEEYEGEYQC-----------------------------FARNKFG 101

Query: 167 EGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCL-TVGVPAPEIIWKTYHIRIV 225
               S  + L  S + P       D         + L C    G+P+P I W +  +  +
Sbjct: 102 TAL-SNRIRLQVS-KSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPI 159

Query: 226 AENEIGSSEPSDTVTILTAEE 246
            +++  S   +  +       
Sbjct: 160 TQDKRVSQGHNGDLYFSNVML 180

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 7/82 (8%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
           A P +  + +N     GE   L C A G     + W +N + L     N        +  
Sbjct: 311 AAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNR----EVAG 366

Query: 110 GVLSDLSIKRTERGDSALFTCE 131
                +  + T+    A++ C 
Sbjct: 367 DT---IIFRDTQISSRAVYQCN 385

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 34/176 (19%), Positives = 57/176 (32%), Gaps = 30/176 (17%)

Query: 45  LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEA-KGEKPIGILWNMNNKRLDPKSDNRYTIR 103
           L +S +P   +  L     + G P  LQC    G     I W  ++       D R +  
Sbjct: 110 LQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPIT-QDKRVSQ- 167

Query: 104 EEILPNGVLSDLSIKRTERGDS-ALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAS 162
                NG   DL        D    ++C  +     +         +++K  +   V  +
Sbjct: 168 ---GHNG---DLYFSNVMLQDMQTDYSCNARFHFTHT---------IQQKNPFTLKVLTT 212

Query: 163 TNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
             + E  PS       ++           +       D+ L C+  GVP P+I W 
Sbjct: 213 RGVAERTPSFMYPQGTAS-----------SQMVLRGMDLLLECIASGVPTPDIAWY 257

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 28/179 (15%), Positives = 44/179 (24%), Gaps = 45/179 (25%)

Query: 43  PPLLLSSAPPEF---EIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNR 99
               ++   P F   +    +Q   RG   +L+C A G     I W      L     ++
Sbjct: 211 TTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL---PSDK 267

Query: 100 YTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYV 159
                    N     L I      DS  + C   +                         
Sbjct: 268 AKFENF---NKA---LRITNVSEEDSGEYFCLASN------------------------- 296

Query: 160 TASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
                   G     +++    +          N      ED +L C   G P P + W 
Sbjct: 297 ------KMGSIRHTISVRV--KAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWM 347

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 32/170 (18%)

Query: 51  PPEFEIKLR-NQTSRRGEPSVLQCEA-KGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
              F+ + R   + RRG+  VL C        +   W  N        + R+        
Sbjct: 101 LENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQ-DNRRFVS----QE 155

Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
            G   +L I + E+ D   +TC + +  +++ ++    + L  +                
Sbjct: 156 TG---NLYIAKVEKSDVGNYTCVVTN-TVTNHKVLGPPTPLILR---------------- 195

Query: 169 QPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
                         P     F +   A     +KL C  +G P P I+W+
Sbjct: 196 -----NDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWR 240

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 57.5 bits (139), Expect = 4e-09
 Identities = 31/206 (15%), Positives = 59/206 (28%), Gaps = 42/206 (20%)

Query: 49  SAPPEFEIKLRNQT---SRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREE 105
            + P F  +  +         +   L CE KG     I W +N   +D   D RY+    
Sbjct: 3   GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYS---- 58

Query: 106 ILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNI 165
            + +G L   +  +T+  D+  + C                              A+ + 
Sbjct: 59  -VVDGSLLINNPNKTQ--DAGTYQC-----------------------------IATNSF 86

Query: 166 GEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPC-LTVGVPAPEIIWKTYHIRI 224
           G    S+   L  +  +           +    + + L C            W       
Sbjct: 87  GTIV-SREAKLQFA-YLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPS 144

Query: 225 VAENEIGSSEPSDTVTILTAEEAPSG 250
             +N    S+ +  + I   E++  G
Sbjct: 145 YQDNRRFVSQETGNLYIAKVEKSDVG 170

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 10/82 (12%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
           A P +   + +      E    +C+A G       W  N   L     +R  I       
Sbjct: 294 AQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLT--RDRIQI-----EQ 346

Query: 110 GVLSDLSIKRTERGDSALFTCE 131
           G    L+I      D+ ++ C 
Sbjct: 347 GT---LNITIVNLSDAGMYQCV 365

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 47.1 bits (112), Expect = 9e-06
 Identities = 25/175 (14%), Positives = 44/175 (25%), Gaps = 42/175 (24%)

Query: 43  PPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTI 102
             ++    P           + +G    L+C A G     ILW   + +   +   R   
Sbjct: 197 DGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARR--- 253

Query: 103 REEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAS 162
                 NG+   L I   ++ D+  + C                              A 
Sbjct: 254 ---HKSNGI---LEIPNFQQEDAGSYEC-----------------------------VAE 278

Query: 163 TNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
            + G+      +T               ++      E +   C   G P P   W
Sbjct: 279 NSRGKNVAKGQLTF----YAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRW 329

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 22/171 (12%), Positives = 38/171 (22%), Gaps = 47/171 (27%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKP--IGILWNMNNKRLDPKSDNRYTIREEIL 107
             P               P  LQC         +   W  N   L            +  
Sbjct: 2   NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTA--------TRKNA 53

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
            N       I +    DS  + C                                  +  
Sbjct: 54  SNME---YRINKPRAEDSGEYHCV------------------------------YHFVSA 80

Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
            + +  + +    +    I     +      +D  + C +VG P PE +W+
Sbjct: 81  PKANATIEV----KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWR 127

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 51.4 bits (123), Expect = 9e-08
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 2/83 (2%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
           A P+     R++    G+ +++ C++ G      +W      +  +  N    R  I+  
Sbjct: 91  AAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSG-RFFIINK 149

Query: 110 GVLSDLSIKR-TERGDSALFTCE 131
              ++L+I       D   + C 
Sbjct: 150 ENYTELNIVNLQITEDPGEYECN 172

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 23/176 (13%), Positives = 44/176 (25%), Gaps = 39/176 (22%)

Query: 48  SSAPPEF----EIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIR 103
           +   P +    +++ R            +C A G     + W  N K      ++R    
Sbjct: 12  NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQ--EHRIGGY 69

Query: 104 EEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAST 163
           +    +     L ++     D   +TC                                 
Sbjct: 70  KVRNQHWS---LIMESVVPSDKGNYTC-----------------------------VVEN 97

Query: 164 NIGEGQPSKNVT-LSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
             G    + ++  +  S   P   A    N +     D++  C       P I W 
Sbjct: 98  EYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 153

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 11/89 (12%), Positives = 28/89 (31%), Gaps = 5/89 (5%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
              P        N ++  G      C+   +    I W  + ++   K         ++L
Sbjct: 115 RHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL 174

Query: 108 PNGVLS-----DLSIKRTERGDSALFTCE 131
            +  ++      L++      D+  + C+
Sbjct: 175 KHSGINSSNAEVLALFNVTEADAGEYICK 203

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 8/92 (8%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
            S+  +    L +QT   G+   L+CE     P    W  N   +  +  +R  + ++  
Sbjct: 4   GSSGLKILTPLTDQTVNLGKEICLKCEISENIP--GKWTKNGLPV--QESDRLKVVQK-- 57

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISS 139
             G +  L I      D   +     +  ++ 
Sbjct: 58  --GRIHKLVIANALTEDEGDYVFAPDAYNVTL 87

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 10/103 (9%)

Query: 247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
           +P  PP         ++T+ + W+ PE       I  Y V  ++           +  + 
Sbjct: 9   SPIDPPGKPVPLNITRHTVTLKWAKPEYTG-GFKITSYIVEKRDLPNG-----RWLKANF 62

Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLG----PGPMSEEVK 345
               E+  T+S L     Y   V A N  G    P   S+ + 
Sbjct: 63  SNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAIT 105

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211

 Score = 57.1 bits (137), Expect = 1e-09
 Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 21/141 (14%)

Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
           I + Y+ R+ A +    SE S T       E    PP  + +   +  +L V    P   
Sbjct: 75  IQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPV-MNITQVN-GSLLVILHAPNLP 132

Query: 276 HWNGVIQ----------GYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQY 325
           +     +           Y V     S +K       +    EG    + + +L  ++ Y
Sbjct: 133 YRYQKEKNVSIEDYYELLYRVFIINNSLEK-------EQKVYEGAHRAVEIEALTPHSSY 185

Query: 326 SVVVQALNKL--GPGPMSEEV 344
            VV +    +       SEE 
Sbjct: 186 CVVAEIYQPMLDRRSQRSEER 206

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211

 Score = 50.2 bits (119), Expect = 4e-07
 Identities = 24/151 (15%), Positives = 43/151 (28%), Gaps = 5/151 (3%)

Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
           T     S  P  ++ ++ + + + + W P       G    Y+V YK     +    E  
Sbjct: 2   TQSTHESLKPQRVQFQSRNFHNI-LQWQPGRAL--TGNSSVYFVQYKIYGQRQWKNKEDC 58

Query: 303 DFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTC 362
                +     LT  +      Y   V+A +       S   +      T   PP  N  
Sbjct: 59  --WGTQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNIT 116

Query: 363 TTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
               S  + +   + P           +  Y
Sbjct: 117 QVNGSLLVILHAPNLPYRYQKEKNVSIEDYY 147

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 7/89 (7%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
               F  K R+     G P+V + E +      + W      +     N+Y +  E    
Sbjct: 7   PVSAFSKKPRSVEVAAGSPAVFEAETERAGVK-VRWQRGGSDISA--SNKYGLATE---- 59

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKIS 138
           G    L+++     D   +     S K+ 
Sbjct: 60  GTRHTLTVREVGPADQGSYAVIAGSSKVK 88

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95

 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 10/99 (10%)

Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
              T   V     ++  VSW           + G+ V Y+ +       +  +       
Sbjct: 7   LVATSESVTEITASSFVVSWVSAS-----DTVSGFRVEYELSEEGDEPQYLDLP-----S 56

Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT 348
               + +  L    +Y V V  +++ G   +     Q T
Sbjct: 57  TATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 17/120 (14%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
            PT ++     +    + W PP        +  Y +    T+   P L          G 
Sbjct: 10  GPTQLRALNLTEGFAVLHWKPP-----QNPVDTYDIQV--TAPGAPPLQAETP-----GS 57

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTI 370
                L  L  +T Y+  V+ L   GP   S     +T   T  + P+D     +T    
Sbjct: 58  AVDYPLHDLVLHTNYTATVRGLR--GPNLTSPASITFT---TGLEAPRDLEAKEVTPSGP 112

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 56.5 bits (136), Expect = 3e-09
 Identities = 16/85 (18%), Positives = 24/85 (28%), Gaps = 3/85 (3%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQC-EAKGEKPIGILWNMNNKRLDPKS--DNRYTIREEI 106
            PP         +   G  +VL C E  G  P    W  +   +        R  +    
Sbjct: 103 VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 162

Query: 107 LPNGVLSDLSIKRTERGDSALFTCE 131
             +    DL        DS  + C+
Sbjct: 163 TIDPKSGDLIFDPVTAFDSGEYYCQ 187

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 49.6 bits (118), Expect = 5e-07
 Identities = 23/169 (13%), Positives = 36/169 (21%), Gaps = 34/169 (20%)

Query: 52  PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGV 111
                   +      E   L C   G     + W                I         
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 112 LSD--LSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
            S   ++     R D+  +TC                               S   G+  
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCM-----------------------------VSEEGGQNY 92

Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCL-TVGVPAPEIIW 217
              ++ L  +  VP    + +   + T      L C    G P  E  W
Sbjct: 93  GEVSIHL--TVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSW 139

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 8/93 (8%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           SS P  F   L+ + +  G  + LQCE     P  + W    + L  +   RY+++++  
Sbjct: 5   SSGPARFTQDLKTKEASEGATATLQCELSKVAP--VEWKKGPETL--RDGGRYSLKQD-- 58

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140
             G   +L I      D+  ++C    ++ S+ 
Sbjct: 59  --GTRCELQIHDLSVADAGEYSCMCGQERTSAT 89

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 57.8 bits (139), Expect = 4e-09
 Identities = 28/229 (12%), Positives = 56/229 (24%), Gaps = 63/229 (27%)

Query: 45  LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEA-KGEKPIGILWNMNNKRLDPKSDNRYTIR 103
           L         +  L     + GEP  ++C+A       G+ W + NK L+  +    +  
Sbjct: 221 LFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTY 280

Query: 104 EEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAST 163
                   +    +    R D+  +TC                                 
Sbjct: 281 STNRTMIRILFAFVSSVARNDTGYYTC--------------------------------- 307

Query: 164 NIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK----- 218
                 PS++  ++   +      + ++++     E+          P     W      
Sbjct: 308 -SSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKS 366

Query: 219 ----------TYHIRI-------------VAENEIGSSEPSDTVTILTA 244
                      Y I                AEN+        T+ I + 
Sbjct: 367 FPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 52.4 bits (125), Expect = 2e-07
 Identities = 19/172 (11%), Positives = 34/172 (19%), Gaps = 41/172 (23%)

Query: 47  LSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI 106
           L         +             LQ        I  LW   +  L+ +       R   
Sbjct: 44  LRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGV- 102

Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIG 166
                   + I +     +  +                                  +   
Sbjct: 103 ------VSMVILKMTETQAGEYLL-----------------------------FIQSEAT 127

Query: 167 EGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
                  V++    R           F     +D  L C++  VP P + W 
Sbjct: 128 NYTILFTVSI----RNTLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWV 174

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 56.5 bits (136), Expect = 5e-09
 Identities = 13/87 (14%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 49  SAPPEFEIKLRNQTSRRGEPSVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
             PP+ +++       RGE + + C A   E    ++    + +L+   ++ +       
Sbjct: 184 PEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDN---- 239

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKS 134
               +  LS+   +  D+ +++C   +
Sbjct: 240 YYKKVRALSLNAVDFQDAGIYSCVASN 266

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 19/170 (11%), Positives = 36/170 (21%), Gaps = 41/170 (24%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
              + +  +  T   G+ +VL C          +       R        Y       P 
Sbjct: 89  AHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVL-RKTVYF----FSPW 143

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
                  I++ +  DS  + C+                                  G   
Sbjct: 144 RG---FIIRKAKVLDSNTYVCKT------------------------------MVNGRES 170

Query: 170 PSKNVTLS--PSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
            S  + L     +  P +I            E  ++ C          + 
Sbjct: 171 TSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVI 220

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 29/205 (14%), Positives = 47/205 (22%), Gaps = 50/205 (24%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           +   P  E          GE   L+C + G     + W+                     
Sbjct: 1   ADPAPVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDPESPG------ 50

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
                S L+ +     ++  + C                             T   +   
Sbjct: 51  -----STLTTRNATFKNTGTYRC-----------------------------TELEDPMA 76

Query: 168 GQPSKNVTLSPSNRVPARI-ASFNDNFTATYTEDIKLPCL-TVGVPAPEIIWKTYHIRIV 225
           G  S  + L    + PA          T    ++  LPCL T       +       R V
Sbjct: 77  G--STTIHLYV--KDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQV 132

Query: 226 AENEIGSSEPSDTVTILTAEEAPSG 250
               +    P     I  A+   S 
Sbjct: 133 LRKTVYFFSPWRGFIIRKAKVLDSN 157

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 6/83 (7%)

Query: 49  SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
              P   +++R+     G+ +      + +    + W  N   L  +  ++         
Sbjct: 6   DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVEL--QESSKIHYTNT--- 60

Query: 109 NGVLSDLSIKRTERGDSALFTCE 131
           +GVL+ L I      DS  +   
Sbjct: 61  SGVLT-LEILDCHTDDSGTYRAV 82

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215

 Score = 55.6 bits (133), Expect = 6e-09
 Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 13/133 (9%)

Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVE------ATDQNTLKVSW 269
           +++   I + AEN +GSSE                PP    ++      +     L +SW
Sbjct: 77  LYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLE-PPMLQALDIGPDVVSHQPGCLWLSW 135

Query: 270 SPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVV 329
            P +      + Q   + Y+       +             +    L  L     Y++ +
Sbjct: 136 KPWKP--SEYMEQECELRYQPQLKGANWTLVFH----LPSSKDQFELCGLHQAPVYTLQM 189

Query: 330 QALNKLGPGPMSE 342
           + +    PG  S 
Sbjct: 190 RCIRSSLPGFWSP 202

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215

 Score = 44.4 bits (104), Expect = 3e-05
 Identities = 20/137 (14%), Positives = 35/137 (25%), Gaps = 7/137 (5%)

Query: 248 PSGPPTHIKVEA-TDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
           P   P+++        N+L   W P    H            +     +          K
Sbjct: 4   PPASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKK 63

Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQP-----PQDNT 361
            +     +   +L  Y   ++ VQA N LG     +           E P          
Sbjct: 64  RQ-NNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPD 122

Query: 362 CTTLTSQTIRVSWVSPP 378
             +     + +SW    
Sbjct: 123 VVSHQPGCLWLSWKPWK 139

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 52.3 bits (126), Expect = 9e-09
 Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 7/82 (8%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILP 108
            PP F     N +   G    +  +  G   P  + W +N + +  +SD+ + +   +  
Sbjct: 4   GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPD-VSWYLNGRTV--QSDDLHKM--IVSE 58

Query: 109 NGVLSDLSIKRTERGDSALFTC 130
            G+ S L  +     D+  + C
Sbjct: 59  KGLHS-LIFEVVRASDAGAYAC 79

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 51.9 bits (125), Expect = 9e-09
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 7/93 (7%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           + A  E E  L       GE +  + E          W +  + L         I E+  
Sbjct: 2   AMALIEVEKPLYGVEVFVGETAHFEIELSEPDVH-GQWKLKGQPLAA--SPDCEIIED-- 56

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140
             G    L +   + G +   + +  + K ++ 
Sbjct: 57  --GKKHILILHNCQLGMTGEVSFQAANTKSAAN 87

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201

 Score = 54.7 bits (131), Expect = 9e-09
 Identities = 32/185 (17%), Positives = 54/185 (29%), Gaps = 27/185 (14%)

Query: 183 PARIASFNDNFTATYTEDIKLPCLTVGVPAPEI------IWKTYHIRIVAENEIGSSEPS 236
               A     FTA Y          +     E        +  + +R+ AE     S+  
Sbjct: 23  SPAFAKGQLTFTAQYLSYRIFQDKCMQTTLTECDFSSLSKYGDHTLRVRAEFADEHSDWV 82

Query: 237 DTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD--------HWNGVIQGYYVGY 288
                   +     P   ++V A   + L + +  P+ +                Y V Y
Sbjct: 83  QITFSPVDDTIIGPPGMQVEVLA---DCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQY 139

Query: 289 KETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKL--GPGPMSEEVKQ 346
            +  TD+ F            +     L +L+ +T Y V V+         G  SE V +
Sbjct: 140 WKQGTDEKFQITP--------QYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCE 191

Query: 347 YTAEG 351
            T   
Sbjct: 192 QTTHD 196

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 20/154 (12%), Positives = 39/154 (25%), Gaps = 19/154 (12%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
           PP ++++ + +   + + W  P           +   Y      +    +T         
Sbjct: 4   PPENVRMNSVNFKNI-LQWESPAFAKGQLT---FTAQYLSYRIFQDKCMQT--------T 51

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTI 370
                 SSL  Y  +++ V+A          +       +     PP            +
Sbjct: 52  LTECDFSSLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTII-GPPGMQVEVLADCLHM 110

Query: 371 RVSWVSPPLITANGVIK------GYKVVYGPSDT 398
           R              +K       Y V Y    T
Sbjct: 111 RFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGT 144

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 5/96 (5%)

Query: 45  LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
            L+          L +   + G  +  +C         + W ++   L    +    I  
Sbjct: 7   GLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHA--NELNEIDA 64

Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140
           +    G    L++++    DS     E   Q+ S+ 
Sbjct: 65  Q---PGGYHVLTLRQLALKDSGTIYFEAGDQRASAA 97

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 8/96 (8%)

Query: 45  LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
           L + + P +F   LRN+ +  G  +VL+CE     P  + W   ++ L  +  +R+++R+
Sbjct: 13  LTVRALPIKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKGHETL--RDGDRHSLRQ 68

Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140
           +    G   +L I+     D+  + C    ++ S+ 
Sbjct: 69  D----GARCELQIRGLVAEDAGEYLCMCGKERTSAM 100

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 32/233 (13%), Positives = 60/233 (25%), Gaps = 52/233 (22%)

Query: 45  LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
           L +   P +  I       R G    L C A    P    W ++                
Sbjct: 375 LNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT--------- 425

Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTN 164
                    +L I      +S L+TC+                             A+ +
Sbjct: 426 --------QELFISNITEKNSGLYTCQ-----------------------------ANNS 448

Query: 165 IGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRI 224
                 +   T++ S  +P    S N++      + +   C          +W      +
Sbjct: 449 ASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSL 507

Query: 225 VAENEIGSSEPSDTVTILTAEEAPSGP-----PTHIKVEATDQNTLKVSWSPP 272
                +  S  + T+T+       +          +    +D  TL V + P 
Sbjct: 508 PVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPD 560

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 39/257 (15%), Positives = 62/257 (24%), Gaps = 65/257 (25%)

Query: 46  LLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREE 105
           +    P        ++     +     CE +  +    LW +NN+ L      + +    
Sbjct: 106 VYPELPKPSISSNNSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRLQLS---- 160

Query: 106 ILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNI 165
              N     L++    R D+A + CE                                N 
Sbjct: 161 -NGNRT---LTLFNVTRNDTASYKCET------------------------------QNP 186

Query: 166 GEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK------- 218
              + S +V L+     P        N +    E++ L C     P  +  W        
Sbjct: 187 VSARRSDSVILNVL-YGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQ 245

Query: 219 -TYHIRI-------------VAENEIGSSEPSDTVTILTAEEAPS---GPPTHIKVEATD 261
            T  + I              A N       +   TI    E P           VE  D
Sbjct: 246 STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDED 305

Query: 262 QNTLK-VSWSPPERDHW 277
              L            W
Sbjct: 306 AVALTCEPEIQNTTYLW 322

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 55.3 bits (133), Expect = 3e-08
 Identities = 39/246 (15%), Positives = 61/246 (24%), Gaps = 65/246 (26%)

Query: 45  LLLSSAPPEFEIKLRNQTSRRGEPSV-LQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIR 103
           + + + PP+  I   N      E +V L CE + +     LW +NN+ L      R  + 
Sbjct: 282 ITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQ-NTTYLWWVNNQSLPV--SPRLQLS 338

Query: 104 EEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAST 163
            +   N  L+   +    R D   + C                                 
Sbjct: 339 ND---NRTLT---LLSVTRNDVGPYECG-----------------------------IQN 363

Query: 164 NIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK----- 218
            +     S  V L+     P                ++ L C     P  +  W      
Sbjct: 364 ELSVDH-SDPVILNVLYG-PDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNI 421

Query: 219 ---TYHIRI-------------VAENEIGSSEPSDTVTILTAEEAP---SGPPTHIKVEA 259
              T  + I              A N       +   TI  + E P           VE 
Sbjct: 422 QQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVED 481

Query: 260 TDQNTL 265
            D    
Sbjct: 482 KDAVAF 487

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 31/207 (14%), Positives = 55/207 (26%), Gaps = 47/207 (22%)

Query: 45  LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
           L +   P    I   N + R GE   L C A    P    W +N                
Sbjct: 197 LNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST--------- 247

Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTN 164
                    +L I      +S  +TC+                             A  +
Sbjct: 248 --------QELFIPNITVNNSGSYTCQ-----------------------------AHNS 270

Query: 165 IGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRI 224
                 +   T++     P    + N++      + + L C          +W   +  +
Sbjct: 271 DTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT-YLWWVNNQSL 329

Query: 225 VAENEIGSSEPSDTVTILTAEEAPSGP 251
                +  S  + T+T+L+      GP
Sbjct: 330 PVSPRLQLSNDNRTLTLLSVTRNDVGP 356

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 28/218 (12%), Positives = 54/218 (24%), Gaps = 61/218 (27%)

Query: 45  LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
            + +  P        ++     +     CE + +     LW +N + L P S        
Sbjct: 461 TVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQ-NTTYLWWVNGQSL-PVSPRLQLSNG 518

Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTN 164
               N  L+   +    R D+  + C                                 +
Sbjct: 519 ----NRTLT---LFNVTRNDARAYVCG-----------------------------IQNS 542

Query: 165 IGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK------ 218
           +   + S  VTL      P        + +     ++ L C +   P+P+  W+      
Sbjct: 543 VSANR-SDPVTLD-VLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQ 600

Query: 219 ----TYHIRIV-----------AENEIGSSEPSDTVTI 241
                  I  +             N       S   +I
Sbjct: 601 QHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 22/201 (10%), Positives = 45/201 (22%), Gaps = 47/201 (23%)

Query: 64  RRGEPSVLQCEAKGEKPIGILWNMNNKRL-------------DPKSDNRYTIREEILPNG 110
             G+  +L      +   G  W    +                      Y+ RE I PN 
Sbjct: 12  AEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNA 71

Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
               L I+   + D+  +T  +                                      
Sbjct: 72  ---SLLIQNIIQNDTGFYTLHV------------------------------IKSDLVNE 98

Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEI 230
                      +P    S N++      + +   C          +W   +  +     +
Sbjct: 99  EATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRL 157

Query: 231 GSSEPSDTVTILTAEEAPSGP 251
             S  + T+T+       +  
Sbjct: 158 QLSNGNRTLTLFNVTRNDTAS 178

>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine receptor,interleukin-4, cytokine/receptor complex; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B* 3bpn_B* 3bpo_B* Length = 207

 Score = 54.3 bits (130), Expect = 1e-08
 Identities = 24/173 (13%), Positives = 53/173 (30%), Gaps = 11/173 (6%)

Query: 188 SFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEA 247
             ++  T     +    C+   +    +    Y + + A  ++           +     
Sbjct: 42  LLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDLWAGQQLLWKGSFKPSEHVKPR-- 99

Query: 248 PSGPPTHIKVEATDQNTLKVSWSPP--ERDHWNGVIQGYYVGYKETSTDKPFLFETVDFS 305
               P ++ V     +TL ++WS P    ++    +  Y V     +    F    V + 
Sbjct: 100 ---APGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLT-YAVNIWSENDPADFRIYNVTY- 154

Query: 306 KEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQ 358
                   +  S+LK+   Y   V+A  +      SE         +  +P +
Sbjct: 155 --LEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTKWHNSYREPFE 205

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 56.2 bits (135), Expect = 1e-08
 Identities = 24/170 (14%), Positives = 39/170 (22%), Gaps = 32/170 (18%)

Query: 49  SAPPEFEIKLRNQTSRRGEPSVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
            A P   +   +   R GE   + C  K     +   W   N +     +   +      
Sbjct: 209 KAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQT-KLQEKYNSWHHGDF 267

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
                + L+I      DS +F C                       N       +T +  
Sbjct: 268 NYERQATLTISSARVNDSGVFMCYAN--------------------NTFGSANVTTTL-- 305

Query: 168 GQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIW 217
                 V       +       N        E++ L       P PE   
Sbjct: 306 -----EVVDKGFINIFPM---INTTVFVNDGENVDLIVEYEAFPKPEHQQ 347

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 53.9 bits (129), Expect = 7e-08
 Identities = 28/196 (14%), Positives = 46/196 (23%), Gaps = 44/196 (22%)

Query: 50  APPEFEI---KLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREE 105
                 I            GE   L  E +   KP    W   N+    K ++      E
Sbjct: 309 DKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENE 368

Query: 106 ILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNI 165
                V S+L + R +  +   +T                                S + 
Sbjct: 369 SNIRYV-SELHLTRLKGTEGGTYTF-----------------------------LVSNSD 398

Query: 166 GEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIV 225
                + NV +         I +++            L C+  G P P I W        
Sbjct: 399 VNAAIAFNVYV----NTKPEILTYDRLVNGM------LQCVAAGFPEPTIDWYFCPGTEQ 448

Query: 226 AENEIGSSEPSDTVTI 241
             +         T+  
Sbjct: 449 RCSASVLPVDVQTLNS 464

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 51.6 bits (123), Expect = 4e-07
 Identities = 22/191 (11%), Positives = 51/191 (26%), Gaps = 40/191 (20%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
           P +  +  R+   +    ++++C     +           +  P  D R+       P  
Sbjct: 114 PAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLP-KDLRFI----PDPKA 168

Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
            +   S+KR          C +                                 G+   
Sbjct: 169 GIMIKSVKRAY--HRLCLHCSV------------------------------DQEGKSVL 196

Query: 171 SKNVTL--SPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAP-EIIWKTYHIRIVAE 227
           S+   L   P+ +    ++    ++     E+  + C    V +     WK  + +   +
Sbjct: 197 SEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQ 256

Query: 228 NEIGSSEPSDT 238
            +  S    D 
Sbjct: 257 EKYNSWHHGDF 267

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 18/88 (20%), Positives = 24/88 (27%), Gaps = 12/88 (13%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRL-----DPKSDNRYTIRE 104
             PE        T  R    +LQC A G     I W                 +  T+  
Sbjct: 411 TKPEI------LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNS 464

Query: 105 EILPNGVL-SDLSIKRTERGDSALFTCE 131
              P G L    SI  +    +    C+
Sbjct: 465 SGPPFGKLVVQSSIDSSAFKHNGTVECK 492

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 24/205 (11%), Positives = 52/205 (25%), Gaps = 54/205 (26%)

Query: 46  LLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREE 105
               +PP       +   R G+   L C   G     + W         ++         
Sbjct: 31  PGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGF----VKWTFEILDETNENKQ------- 79

Query: 106 ILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNI 165
                  ++   ++ E  ++  +TC  K    +S               Y+F        
Sbjct: 80  -------NEWITEKAEATNTGKYTCTNKHGLSNS--------------IYVFV------- 111

Query: 166 GEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIV 225
                          R PA++   + +       D  + C            K    + +
Sbjct: 112 ---------------RDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPL 156

Query: 226 AENEIGSSEPSDTVTILTAEEAPSG 250
            ++     +P   + I + + A   
Sbjct: 157 PKDLRFIPDPKAGIMIKSVKRAYHR 181

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 17/109 (15%), Positives = 29/109 (26%), Gaps = 14/109 (12%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
            P  ++ +     T  ++W+ P          GY + +                    G 
Sbjct: 10  APRDLEAKEVTPRTALLTWTEP-----PVRPAGYLLSFHTPG-------GQTQEILLPGG 57

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQD 359
                L  L   T Y+  +QA+      P       +T  G     P  
Sbjct: 58  ITSHQLLGLFPSTSYNARLQAMWGQSLLPPVSTS--FTTGGLRISGPSS 104

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 5/46 (10%)

Query: 352 TPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD 397
           +  + P+D     +T +T  ++W  PP         GY + +    
Sbjct: 6   SGLEAPRDLEAKEVTPRTALLTWTEPP-----VRPAGYLLSFHTPG 46

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 33/246 (13%), Positives = 58/246 (23%), Gaps = 60/246 (24%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPI-GILWNMNNKRLDPKSDNRYTIREEI 106
           +  P     +        G+   L C   G  P+   +W  +   L P    R  +    
Sbjct: 5   AEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVP--SERVLVGP-- 60

Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIG 166
                   L +      DS  ++C  +               +    +       S+   
Sbjct: 61  ------QRLQVLNASHEDSGAYSCRQRL-----------TQRVLCHFSVRVTDAPSSGDD 103

Query: 167 EGQPSKNVTLSPSNRVPARIASFND---NFTATYTEDIKLPCLTVGVPAPEIIWK----- 218
           E    +          P                    ++  C   G P P I W      
Sbjct: 104 EDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE 163

Query: 219 ---------------TYHIRI-------------VAENEIGSSEPSDTVTILTAEEAPSG 250
                           + + +             V EN+ GS   + T+ +L  E +P  
Sbjct: 164 FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL--ERSPHR 221

Query: 251 PPTHIK 256
           P     
Sbjct: 222 PILQAG 227

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 25/178 (14%), Positives = 43/178 (24%), Gaps = 39/178 (21%)

Query: 46  LLSSAPPEF----EIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYT 101
            + +  P +     +  +            +C A G     I W  N +      ++R  
Sbjct: 114 GVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRG--EHRIG 171

Query: 102 IREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTA 161
             +          L ++     D   +TC                               
Sbjct: 172 GIKLRHQQWS---LVMESVVPSDRGNYTC-----------------------------VV 199

Query: 162 STNIGEGQPSKNVT-LSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
               G  + +  +  L  S   P   A    N TA    D++  C       P I W 
Sbjct: 200 ENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 257

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 44.6 bits (105), Expect = 5e-05
 Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 7/90 (7%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILW----NMNNKRLDPKSDNRYTIR 103
              P        NQT+  G      C+   +    I W     +N  ++ P      T+ 
Sbjct: 219 PHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVL 278

Query: 104 EEILPNGVLSD---LSIKRTERGDSALFTC 130
           +    N    +   LS+      D+  +TC
Sbjct: 279 KTAGANTTDKELEVLSLHNVTFEDAGEYTC 308

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
            P+   ++++QT  +G  +  +    G+      W  N  +++  SD  Y    E   + 
Sbjct: 5   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIER-SDRIYWYWPE---DN 60

Query: 111 VLSDLSIKRTERGDSALFTCE 131
           V   L I+     DSA    +
Sbjct: 61  VCE-LVIRDVTGEDSASIMVK 80

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 54.7 bits (131), Expect = 2e-08
 Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 1/98 (1%)

Query: 47  LSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI 106
           L  +     +       R+GE   L C   G + +   W    K    +     T     
Sbjct: 177 LQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKE-SGRLVEPVTDFLLD 235

Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTY 144
           +P  + S L I   E  DS  +TC +       Q    
Sbjct: 236 MPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKA 273

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 6/86 (6%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           ++       K R+ T   GE +   C+  GE    + W    + L      R+ +     
Sbjct: 11  TTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLST--SARHQVTTT-- 66

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIK 133
                S   I   +  D   ++  ++
Sbjct: 67  --KYKSTFEISSVQASDEGNYSVVVE 90

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 10/83 (12%), Positives = 24/83 (28%), Gaps = 6/83 (7%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
            P+     R    + G    L+ +  G       W + +            +  +     
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGA--ALAPELLVDAK----S 55

Query: 111 VLSDLSIKRTERGDSALFTCEIK 133
             + +     +R DS  +  ++K
Sbjct: 56  STTSIFFPSAKRADSGNYKLKVK 78

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 5/82 (6%)

Query: 49  SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
              P F   + +     G  +   C+ +G     ++W  ++  +  K    + I  +   
Sbjct: 39  HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPV--KESRHFQIDYD--E 94

Query: 109 NGVLSDLSIKRTERGDSALFTC 130
            G  S L+I      D A +TC
Sbjct: 95  EGNCS-LTISEVCGDDDAKYTC 115

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 20/208 (9%), Positives = 46/208 (22%), Gaps = 46/208 (22%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNMNNKRLDPKSDNRYTIREEILPN 109
              + +  +       + ++L C         G+       R        Y+      P 
Sbjct: 89  ARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLM-RHTNYS----FSPW 143

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
                 +I R +   S  + C                                   G   
Sbjct: 144 H---GFTIHRAKFIQSQDYQCSA------------------------------LMGGRKV 170

Query: 170 PSKNVTLS--PSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTY-----HI 222
            S ++ L        P  +            E  ++ C    V     ++  +      I
Sbjct: 171 MSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAI 230

Query: 223 RIVAENEIGSSEPSDTVTILTAEEAPSG 250
              ++      +   T+ +   +   +G
Sbjct: 231 PQQSDFHNNRYQKVLTLNLDQVDFQHAG 258

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 53.8 bits (129), Expect = 4e-08
 Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 49  SAPPEFEIKLRNQTSRRGEPSVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
             PP   +        RGE + + C A   +    +    NN +L     + +       
Sbjct: 184 PGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRY-- 241

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKS 134
               +  L++ + +   +  ++C   +
Sbjct: 242 --QKVLTLNLDQVDFQHAGNYSCVASN 266

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 31/205 (15%), Positives = 55/205 (26%), Gaps = 50/205 (24%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           + + P  E  +     + G    L+C   G     + W+              +    + 
Sbjct: 1   AGSIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPP-----------SPHWTLY 45

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGE 167
            +G  S LS       ++  + C                             T   +   
Sbjct: 46  SDGSSSILSTNNATFQNTGTYRC-----------------------------TEPGDPLG 76

Query: 168 GQPSKNVTLSPSNRVPARI-ASFNDNFTATYTEDIKLPCL-TVGVPAPEIIWKTYHIRIV 225
           G  + ++ +    + PAR              +D  LPCL T  V    +       R +
Sbjct: 77  GSAAIHLYV----KDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPL 132

Query: 226 AENEIGSSEPSDTVTILTAEEAPSG 250
             +   S  P    TI  A+   S 
Sbjct: 133 MRHTNYSFSPWHGFTIHRAKFIQSQ 157

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 206

 Score = 53.2 bits (127), Expect = 3e-08
 Identities = 16/128 (12%), Positives = 32/128 (25%), Gaps = 15/128 (11%)

Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWN 278
            Y++R+ A     +S  S        +      P  +++       L +           
Sbjct: 80  PYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPG-MEITKDG-FHLVIELEDLGPQF-- 135

Query: 279 GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKL--G 336
                + V Y           + V           + L +++    Y V  Q   K    
Sbjct: 136 ----EFLVAYWRREPGAEEHVKMV-----RSGGIPVHLETMEPGAAYCVKAQTFVKAIGR 186

Query: 337 PGPMSEEV 344
               S+  
Sbjct: 187 YSAFSQTE 194

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 206

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 14/145 (9%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG- 309
            P  + V +T+   L + WSP            Y V Y+            +  S     
Sbjct: 9   APQQLSVLSTNMKHL-LMWSPVIAPGETVY---YSVEYQGEYESLYTSHIWIPSSWCSLT 64

Query: 310 KEHHLTLSS-LKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQ 368
           +     ++  +     Y++ V+A         S     +  + T    P           
Sbjct: 65  EGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITKDGFHL 124

Query: 369 TIRVSWVSPPLITANGVIKGYKVVY 393
            I +  + P           + V Y
Sbjct: 125 VIELEDLGPQF--------EFLVAY 141

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 50.7 bits (121), Expect = 3e-08
 Identities = 22/121 (18%), Positives = 35/121 (28%), Gaps = 18/121 (14%)

Query: 233 SEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETS 292
           S  S              PP  +    T    + + W PPE       + GY +  ++ S
Sbjct: 2   SSGSS----------GLSPPRGLVAVRTP-RGVLLHWDPPELV--PKRLDGYVLEGRQGS 48

Query: 293 TDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGT 352
                 +E +D     G E  L +  L     Y   + A         S      T+  +
Sbjct: 49  QG----WEVLD-PAVAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLS 103

Query: 353 P 353
            
Sbjct: 104 G 104

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 41.1 bits (96), Expect = 9e-05
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAP 248
              Y  R+VA      S+PS+T  + T+  + 
Sbjct: 73  DVLYEFRLVAFAGSFVSDPSNTANVSTSGLSG 104

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 52.9 bits (127), Expect = 4e-08
 Identities = 31/214 (14%), Positives = 49/214 (22%), Gaps = 52/214 (24%)

Query: 66  GEPSVLQCEAKGEKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD 124
            E   L          + + W+ N   +  +  +R          G    L I      D
Sbjct: 17  AEGIQLYSFVTYYVEDLKVNWSHNGSAI--RYSDRVKTGVT----GEQIWLQINEPTPND 70

Query: 125 SALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPA 184
              +  E+   K   Q+                   A                       
Sbjct: 71  KGKYVMELFDGKTGHQK------------TVDLSGQAYDEAYAEFQRLKQAAIAEKNRAR 118

Query: 185 RIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK--------TYHIRI------------ 224
            +    D  T    + + L C   G P PE+ W         T H  +            
Sbjct: 119 VLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTI 178

Query: 225 -------------VAENEIGSSEPSDTVTILTAE 245
                        V +N+ GS     TV++   E
Sbjct: 179 NGVSTADSGKYGLVVKNKYGSETSDFTVSVFIPE 212

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 5/104 (4%)

Query: 30  FDPELLNPSFNGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNN 89
           +D             +   +            T + G+   L C   G+ P  + W  N 
Sbjct: 96  YDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNE 155

Query: 90  KRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIK 133
           K L     +   ++ E    G  +  +I      DS  +   +K
Sbjct: 156 KALAQ--TDHCNLKFE---AGRTAYFTINGVSTADSGKYGLVVK 194

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221

 Score = 53.3 bits (127), Expect = 4e-08
 Identities = 21/137 (15%), Positives = 44/137 (32%), Gaps = 19/137 (13%)

Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWN 278
            Y+ R+ A      S+ +++       E   GPP           ++ ++     + +  
Sbjct: 79  QYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLTAPEKWKRNPE 138

Query: 279 GVIQ---------GYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVV 329
            +            Y V    T +++ +         +    H L L+ L+  T Y V V
Sbjct: 139 DLPVSMQQIYSNLKYNVSVLNTKSNRTW--------SQCVTNHTLVLTWLEPNTLYCVHV 190

Query: 330 QALNKL--GPGPMSEEV 344
           ++           SE+ 
Sbjct: 191 ESFVPGPPRRAQPSEKQ 207

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221

 Score = 51.8 bits (123), Expect = 1e-07
 Identities = 25/143 (17%), Positives = 45/143 (31%), Gaps = 5/143 (3%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
            P +I   + +   + + W+PPE     GV   Y V Y      K               
Sbjct: 11  KPANITFLSINMKNV-LQWTPPE--GLQGVKVTYTVQYFIYGQKKWLNKSEC--RNINRT 65

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTI 370
              L+  +     QY   V+A+        +E  + Y    T   PP+    T   S ++
Sbjct: 66  YCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISV 125

Query: 371 RVSWVSPPLITANGVIKGYKVVY 393
            ++           +    + +Y
Sbjct: 126 VLTAPEKWKRNPEDLPVSMQQIY 148

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 54.6 bits (130), Expect = 4e-08
 Identities = 25/203 (12%), Positives = 58/203 (28%), Gaps = 8/203 (3%)

Query: 215 IIWKTYHIRIVAENEIGSSEP-SDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPE 273
           I  +++ +  V         P    +T+   +      P  +++    Q+   ++WS   
Sbjct: 74  IPCQSFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTD-QDHFLLTWSVAL 132

Query: 274 RDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALN 333
               +  +    + ++         +E          +  L    L   + Y   V+   
Sbjct: 133 GSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRL 192

Query: 334 KLGPGPMSEE-----VKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKG 388
             G               + ++   E  PQ+  C    +  +  SW       A+ V  G
Sbjct: 193 APGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSW-EVRKEVASSVSFG 251

Query: 389 YKVVYGPSDTWYGDPKTDICTDI 411
                 P        + + C+ +
Sbjct: 252 LFYKPSPDAGSAVLLREEECSPV 274

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 51.5 bits (122), Expect = 3e-07
 Identities = 26/203 (12%), Positives = 53/203 (26%), Gaps = 23/203 (11%)

Query: 217 WKTYHIRIVAENEIGSSEPSD-----TVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSP 271
             TY  R+      GS                ++      P +++        L  SW  
Sbjct: 181 SSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEV 240

Query: 272 PERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQA 331
            +    +     +Y    +          +    +EE     L       +T++   +  
Sbjct: 241 RKEVASSVSFGLFYKPSPDA--------GSAVLLREEECSPVLREGLGSLHTRHHCQIPV 292

Query: 332 LNKLGPGPMSEEVKQYTAEGT-------PEQPPQDNTCTTLTSQTIRVSWVSPPLITANG 384
            +    G     V+   AE            PP      T    +  + W     +    
Sbjct: 293 PDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQV--TKDGDSYSLRW-ETMKMRYEH 349

Query: 385 VIKGYKVVYGPSDTWYGDPKTDI 407
           +   +++ Y      + D KT+ 
Sbjct: 350 IDHTFEIQYRKDTATWKDSKTET 372

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 26/247 (10%), Positives = 62/247 (25%), Gaps = 52/247 (21%)

Query: 129 TCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIAS 188
             +      ++ Q T     L     Y+  V      G     +    SP     ++   
Sbjct: 158 WEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGD 217

Query: 189 FNDNFTATYTED-------------------------------------IKLPCLTVGVP 211
                      D                                      +  C  V   
Sbjct: 218 EAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKPSPDAGSAVLLREEECSPVLRE 277

Query: 212 APEIIWKTYHIRIVAENEIGSSEPSDTV-------TILTAEEAPSGPPTHIKVEATDQNT 264
               +   +H +I   +     +   +V        I ++      PP  ++V     ++
Sbjct: 278 GLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPP-SLQVTKDG-DS 335

Query: 265 LKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQ 324
             + W   +   +  +   + + Y++ +            ++     H + L +L+  T+
Sbjct: 336 YSLRWETMKM-RYEHIDHTFEIQYRKDTAT-----WKDSKTETLQNAHSMALPALEPSTR 389

Query: 325 YSVVVQA 331
           Y   V+ 
Sbjct: 390 YWARVRV 396

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEI 106
           S   P F     + T + G+   + C+  G   P  + W ++ K + P  D+ + +   +
Sbjct: 6   SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPD-LSWQLDGKPVRP--DSAHKM--LV 60

Query: 107 LPNGVLSDLSIKRTERGDSALFTC 130
             NGV S L I+     D+ ++TC
Sbjct: 61  RENGVHS-LIIEPVTSRDAGIYTC 83

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 53.8 bits (129), Expect = 4e-08
 Identities = 17/168 (10%), Positives = 44/168 (26%), Gaps = 29/168 (17%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
            P  +  + N           +C+    K     W+ +      +   R     E+   G
Sbjct: 3   DPFTKEVVVNVDDDGVISLNFECDKMTPKSE-FSWSKDYVST--EDSPRL----EVESKG 55

Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
             + ++ K     D  +++C++      +                      S  I E + 
Sbjct: 56  NKTKMTFKDLGMDDLGIYSCDVTDTDGIAS---------------------SYLIDEEEL 94

Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPC-LTVGVPAPEIIW 217
            + + LS  ++ P                 ++            ++ +
Sbjct: 95  KRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNY 142

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 22/194 (11%), Positives = 55/194 (28%), Gaps = 22/194 (11%)

Query: 26  SSFHFDPELLNPSFNGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILW 85
           SS+  D E L                   + +L  +   +G+        K      + +
Sbjct: 85  SSYLIDEEELKRLLALSHEH--KFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNY 142

Query: 86  NMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYE 145
             N K +      +  I      N  + ++ +++ +  D   +T +++  K ++      
Sbjct: 143 IFNEKEIFEGPKYKMHIDR----NTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVL 198

Query: 146 ASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPC 205
              + KK                + ++        +       +      T   ++ L C
Sbjct: 199 VGDVFKK--------------LQKEAEFQRQEWIRKQGPHFVEYLSW-EVTGECNVLLKC 243

Query: 206 LTVGVPAP-EIIWK 218
               +     I+W 
Sbjct: 244 KVANIKKETHIVWY 257

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 10/106 (9%)

Query: 31  DPELLNPSFNGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNMNN 89
             + L           +    P F   L +         +L+C+    K    I+W  + 
Sbjct: 202 VFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDE 260

Query: 90  KRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135
           + +    D ++  ++ I        L I    + D+ ++   +K  
Sbjct: 261 REISV--DEKHDFKDGI------CTLLITEFSKKDAGIYEVILKDD 298

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210

 Score = 52.8 bits (126), Expect = 5e-08
 Identities = 29/160 (18%), Positives = 46/160 (28%), Gaps = 14/160 (8%)

Query: 248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE 307
           P G P   K  + ++ T    W P             Y    ET        E  D+   
Sbjct: 3   PPGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLMH-----ECPDYITG 57

Query: 308 EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTL-- 365
                H        +  Y ++V A N++G     E     T    P+ PP +        
Sbjct: 58  GPNSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPD-PPLELAVEVKQP 116

Query: 366 --TSQTIRVSWVSPPL--ITANGVIKGYKVVYGP--SDTW 399
                 + + W  P L  +        Y++   P  +  W
Sbjct: 117 EDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEW 156

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 27/146 (18%), Positives = 47/146 (32%), Gaps = 13/146 (8%)

Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAE---EAPSGPPTHIKVEATDQNTLKVSWSPP 272
           +W+TY + + A N++GSS   +    +T     + P      +K     +  L + WSPP
Sbjct: 71  MWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPP 130

Query: 273 ERDHW--NGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQ 330
                        Y +  K     +   +E        G++    + SL    +Y V V+
Sbjct: 131 TLIDLKTGWFTLLYEIRLKPEKAAE---WEIH----FAGQQTEFKILSLHPGQKYLVQVR 183

Query: 331 ALNKLGP-GPMSEEVKQYTAEGTPEQ 355
                G     S              
Sbjct: 184 CKPDHGYWSAWSPATFIQIPSDFTMN 209

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 52.3 bits (125), Expect = 5e-08
 Identities = 10/85 (11%), Positives = 16/85 (18%), Gaps = 2/85 (2%)

Query: 46  LLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREE 105
           L    P    +              + C         + W M        +         
Sbjct: 99  LSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEP--APTAANGGVM 156

Query: 106 ILPNGVLSDLSIKRTERGDSALFTC 130
              +G LS        +      TC
Sbjct: 157 KEKDGSLSVAVDLSLPKPWHLPVTC 181

>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B* 2erj_B* Length = 214

 Score = 52.9 bits (126), Expect = 5e-08
 Identities = 17/141 (12%), Positives = 39/141 (27%), Gaps = 9/141 (6%)

Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWN 278
              +R++    +     +               P  ++V   + +   +SW   +  H+ 
Sbjct: 77  IVTLRVLCREGVRWRVMAIQDFKPFENLRLM-APISLQVVHVETHRCNISWEISQASHYF 135

Query: 279 GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPG 338
                +              +E       + K+  + L +L   TQY   V+     G  
Sbjct: 136 ERHLEFEARTLSPGHT----WEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEF 191

Query: 339 PM----SEEVKQYTAEGTPEQ 355
                 S+ +   T      +
Sbjct: 192 TTWSPWSQPLAFRTKPAALGK 212

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 52.0 bits (124), Expect = 6e-08
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 2/85 (2%)

Query: 49  SAPPEFEIKLRNQTSRRGEPSVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
             PP  +    ++    GE ++L C+++         W       D    N    R  + 
Sbjct: 81  HGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVS 140

Query: 108 PNGVLSDLSIKR-TERGDSALFTCE 131
            +   S+L I+      D   + C 
Sbjct: 141 SSQGRSELHIENLNMEADPGQYRCN 165

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 7/90 (7%)

Query: 50  APPEFEIKLR-NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
               F+ KL       +G    L  E        + W  N + +   S ++Y        
Sbjct: 14  KSTAFQKKLEPAYQVSKGHKIRLTVELADHDAE-VKWLKNGQEIQM-SGSKYIFESI--- 68

Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKIS 138
            G    L+I +    D A + C +  +K S
Sbjct: 69  -GAKRTLTISQCSLADDAAYQCVVGGEKCS 97

>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 Length = 247

 Score = 52.9 bits (126), Expect = 7e-08
 Identities = 18/151 (11%), Positives = 49/151 (32%), Gaps = 5/151 (3%)

Query: 228 NEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVG 287
           NE  +++   T     +    + P   ++    +   +  +W                + 
Sbjct: 16  NEDTTADFFLTTMPTDSLSVSTLPLPEVQCFVFNVEYMNCTWQSSSEPQP----TNLTLH 71

Query: 288 YKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQY 347
           Y   ++D   + +   +   E       L   + +   + VVQ  +   P   + ++ + 
Sbjct: 72  YWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKL 131

Query: 348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPP 378
                P   P++ T   L+   + ++W +  
Sbjct: 132 QNLVIPW-APENLTLHKLSESQLELNWNNRF 161

>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 Length = 247

 Score = 50.2 bits (119), Expect = 5e-07
 Identities = 18/152 (11%), Positives = 51/152 (33%), Gaps = 19/152 (12%)

Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
           +++T+ +++           +  +  L     P   P ++ +    ++ L+++W+    +
Sbjct: 107 LYQTFVVQLQDPR--EPRRQATQMLKLQNLVIPW-APENLTLHKLSESQLELNWNNRFLN 163

Query: 276 HWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQA---L 332
           H       + V Y+          +     +     H  +L S+    +Y+  V++    
Sbjct: 164 H----CLEHLVQYRTDW-------DHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNP 212

Query: 333 NKLGPGPMSE--EVKQYTAEGTPEQPPQDNTC 362
                   SE      + +  + E P   +  
Sbjct: 213 LCGSAQHWSEWSHPIHWGSNTSKENPRTGHHH 244

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 49.7 bits (119), Expect = 7e-08
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 8/94 (8%)

Query: 48  SSAPPEFEIKLRNQTS-RRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI 106
            S+   F   L       +G       E    K   + W  N + + P    +Y    + 
Sbjct: 4   GSSGAAFAKILDPAYQVDKGGRVRFVVELADPKLE-VKWYKNGQEIRP--STKYIFEHK- 59

Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140
              G    L I   +  D + +      +K S++
Sbjct: 60  ---GCQRILFINNCQMTDDSEYYVTAGDEKCSTE 90

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 49.2 bits (118), Expect = 9e-08
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
             P F   L++     G+  VLQC  +G     I W +N + +      R T    +   
Sbjct: 10  VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQY---ARSTCEAGV--- 63

Query: 110 GVLSDLSIKRTERGDSALFTCE 131
              ++L I+     D   +TC 
Sbjct: 64  ---AELHIQDALPEDHGTYTCL 82

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 22/173 (12%), Positives = 43/173 (24%), Gaps = 37/173 (21%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
              F     N T  RG    L+C+ + + +P  + W  + + L+     +  +       
Sbjct: 2   ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61

Query: 110 GVLSD---LSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIG 166
                   L I   +  D+  + C                                    
Sbjct: 62  DDWIVVSQLRITSLQLSDTGQYQCL-----------------------------VFLGHQ 92

Query: 167 EGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAP-EIIWK 218
               S+   +              ++ T        L C   G P P +++W 
Sbjct: 93  TFV-SQPGYVGL--EGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWL 142

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 14/83 (16%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILP 108
             P F  +  ++T     P  L C+A+G  +P+ +LW  +   L     +         P
Sbjct: 105 GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH--------GP 156

Query: 109 NGVLSDLSIKRTERGDSALFTCE 131
              L    +       ++ F+CE
Sbjct: 157 QRSLHVPGLN-----KTSSFSCE 174

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 2/88 (2%)

Query: 46  LLSSAPPEFEIKLRNQTSRRGEPSVLQC-EAKGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
           L+   PP         ++  G  +VL C E  G  P    W  +   +     +      
Sbjct: 102 LIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSN 161

Query: 105 E-ILPNGVLSDLSIKRTERGDSALFTCE 131
              + N    +L        D+  ++CE
Sbjct: 162 SSYVLNPTTGELVFDPLSASDTGEYSCE 189

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 50.0 bits (119), Expect = 4e-07
 Identities = 26/173 (15%), Positives = 35/173 (20%), Gaps = 34/173 (19%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           +                   P  L C   G     + W  +             I     
Sbjct: 1   AMGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYE 60

Query: 108 PNGVLSD--LSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNI 165
                    ++ K   R D+  +TC                               S   
Sbjct: 61  DRVTFLPTGITFKSVTREDTGTYTCM-----------------------------VSEEG 91

Query: 166 GEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCL-TVGVPAPEIIW 217
           G       V L     VP    + N   +AT      L C    G P  E  W
Sbjct: 92  GNSYGEVKVKL--IVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTW 142

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A Length = 227

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 9/116 (7%)

Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
            +    +R+ A +          +  +   +AP G    +  E+     + + W PP   
Sbjct: 93  SFVPLELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGH---VVLRWLPPPET 149

Query: 276 HWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQA 331
                I+ Y V               +             LS+L+  T+Y+  V+A
Sbjct: 150 PMTSHIR-YEVDVSAGQGAGSVQRVEIL-----EGRTECVLSNLRGRTRYTFAVRA 199

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A Length = 227

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 19/179 (10%), Positives = 41/179 (22%), Gaps = 10/179 (5%)

Query: 233 SEPSDTVTILTAEEA--PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
             P +      ++ A   +  P  +         L   W              Y   Y+ 
Sbjct: 3   FPPPNPDPKFESKAALLAARGPEELLCFTERLEDLVCFWEEAA--SAGVGPGQYSFSYQL 60

Query: 291 TSTDKP--FLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT 348
                    L +             L  +   ++    + V A +          + +  
Sbjct: 61  EDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVV 120

Query: 349 AEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDI 407
               P          +     + + W+ PP       I+ Y+V            + +I
Sbjct: 121 LLDAPVGLVARLADES---GHVVLRWLPPPETPMTSHIR-YEVDVSAGQGAGSVQRVEI 175

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 15/88 (17%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
             + +   R   +  G  + L CE    +   + W  + K+L   S ++  +       G
Sbjct: 11  FAKEQPAHREVQAEAGASATLSCEVAQAQTE-VTWYKDGKKL--SSSSKVRVEAV----G 63

Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKIS 138
               L +++  + ++  ++CE   Q++S
Sbjct: 64  CTRRLVVQQAGQAEAGEYSCEAGGQQLS 91

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 11/82 (13%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
           +     +++ +     G+   L+C  + +    I W  +  +L     NR  I  E    
Sbjct: 2   SSGSSGVEVESFLVHPGDLLQLRCRLRDDVQS-INWLRDGVQLAE--SNRTRITGEE--- 55

Query: 110 GVLSDLSIKRTERGDSALFTCE 131
                + ++ +   DS L+ C 
Sbjct: 56  -----VEVQDSVPADSGLYACV 72

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A Length = 236

 Score = 50.6 bits (120), Expect = 3e-07
 Identities = 26/179 (14%), Positives = 48/179 (26%), Gaps = 8/179 (4%)

Query: 228 NEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDH--WNGVIQGYY 285
             +  +  S        +   SG P   K  + ++ T    W+          G IQ +Y
Sbjct: 9   AILSRAPWSLQSVNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFY 68

Query: 286 VGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG-PGPMSEEV 344
                    + +  E  D+        +   S       Y + + +          S + 
Sbjct: 69  TRRNTQEWTQEW-KECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDE 127

Query: 345 KQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPL--ITANGVIKGYKVVYGP--SDTW 399
                          N   T     I+V W +P    I    ++  Y++ Y       W
Sbjct: 128 IVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKW 186

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A Length = 236

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 10/119 (8%)

Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNT-LKVSWSPPER 274
           I   Y I++ +       +      I+  +   +   T + V  T  +  ++V W  P  
Sbjct: 103 IAIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRN 162

Query: 275 DHWNG--VIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQA 331
                  ++  Y + YKE +  K  + + +           + + SLK   +Y V V++
Sbjct: 163 ADIQKGWMVLEYELQYKEVNETKWKMMDPI-------LTTSVPVYSLKVDKEYEVRVRS 214

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 7/78 (8%)

Query: 57  KLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDL 115
           ++ +     G      C+ +   +   + W    ++L  ++  +Y I  E   +GV   L
Sbjct: 7   QIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQL--ENSEKYEITYE---DGVAI-L 60

Query: 116 SIKRTERGDSALFTCEIK 133
            +K   + D   + C++ 
Sbjct: 61  YVKDITKLDDGTYRCKVV 78

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 50.9 bits (120), Expect = 4e-07
 Identities = 39/308 (12%), Positives = 91/308 (29%), Gaps = 30/308 (9%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
              + ++L       GE  VL C+    +  GI W ++       S    TI+ +   + 
Sbjct: 6   KDVYVVELDWYPDAPGEMVVLTCD--TPEEDGITWTLDQSSEVLGSGKTLTIQVKEFGDA 63

Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNI----- 165
                         S L   + +    S+  +  +     K          S        
Sbjct: 64  GQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWL 123

Query: 166 --GEGQPSKNVTLSPSNRVPARIASFNDNFTATYTE------DIKLPCLTVGVPAPEIIW 217
                  + +V  S  +  P  +       +A          +  + C            
Sbjct: 124 TTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEES 183

Query: 218 KTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNT-LKVSWSPPER-- 274
               + + A +++       T +    +     PP +++++    +  ++VSW  P+   
Sbjct: 184 LPIEVMVDAVHKLKYE--QYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWS 241

Query: 275 DHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNK 334
              +     + V  +  S  +    +   F+ +       T +++      S+ V+A ++
Sbjct: 242 TPHSYFSLTFCVQVQGKSKRE---KKDRVFTDK-------TSATVICRKNASISVRAQDR 291

Query: 335 LGPGPMSE 342
                 SE
Sbjct: 292 YYSSSWSE 299

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 9/93 (9%)

Query: 48  SSAPPEFEI--KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREE 105
           SS P          + T    E  VL CE          W  + +++  +      ++ +
Sbjct: 5   SSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKV--EESELLVVKMD 61

Query: 106 ILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS 138
               G    L +   +  DS  F C  +     
Sbjct: 62  ----GRKHRLILPEAKVQDSGEFECRTEGVSAF 90

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 49.2 bits (117), Expect = 5e-07
 Identities = 25/181 (13%), Positives = 53/181 (29%), Gaps = 54/181 (29%)

Query: 62  TSRRGEPSVLQCEAKGEKPIGILWNMNNKRL------------DPKSDNRYTIREEILPN 109
             ++G+   L C A  +K I   W  +N+                K ++R   R  +   
Sbjct: 6   LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
           G    L IK  +  DS  + CE++ QK   Q + +                         
Sbjct: 66  GNFP-LIIKNLKIEDSDTYICEVEDQKEEVQLLVF------------------------- 99

Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENE 229
               +T +    +                + + L   +    +P +  ++   + +   +
Sbjct: 100 ---GLTANSDTHL-------------LQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGK 143

Query: 230 I 230
            
Sbjct: 144 T 144

>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex, fibronectin-III, cytokine, glycoprotein, polymorphism, secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R* Length = 211

 Score = 49.7 bits (118), Expect = 6e-07
 Identities = 18/155 (11%), Positives = 37/155 (23%), Gaps = 23/155 (14%)

Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHW- 277
            Y+ R+ A +  G S    T    + +     PP  +   +    ++++   P       
Sbjct: 74  LYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPPD-VTCISKV-RSIQMIVHPTPTPIRA 131

Query: 278 -NGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG 336
            +G        + +                  GK+       L   T++   +  L    
Sbjct: 132 GDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGKQREYEFFGLTPDTEFLGTIMILVPTW 191

Query: 337 P--GPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQT 369
                                        TL  +T
Sbjct: 192 AKESAPYMCR-----------------VKTLPDRT 209

>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex, fibronectin-III, cytokine, glycoprotein, polymorphism, secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R* Length = 211

 Score = 40.5 bits (94), Expect = 6e-04
 Identities = 24/148 (16%), Positives = 52/148 (35%), Gaps = 6/148 (4%)

Query: 246 EAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFS 305
           E PS    H+K ++++   + ++W        + V   Y + YK          +     
Sbjct: 2   EDPSDLLQHVKFQSSNFENI-LTWDSGPEGTPDTV---YSIEYKTYGERDWVAKKGCQRI 57

Query: 306 KEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTL 365
               K  +LT+ +      Y   V A++  G        +  + + T  +PP     + +
Sbjct: 58  TR--KSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPPDVTCISKV 115

Query: 366 TSQTIRVSWVSPPLITANGVIKGYKVVY 393
            S  + V     P+   +G     + ++
Sbjct: 116 RSIQMIVHPTPTPIRAGDGHRLTLEDIF 143

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 50.5 bits (120), Expect = 6e-07
 Identities = 30/228 (13%), Positives = 57/228 (25%), Gaps = 41/228 (17%)

Query: 47  LSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIG-----ILWNMNNKRLDPKSDNRYT 101
             +           Q        VL C    E         I W  ++  LD  ++   +
Sbjct: 116 FENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLS 175

Query: 102 IREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTA 161
           +R         + L +      D+  + C           +T+   G +      + +T 
Sbjct: 176 VRGT-------THLLVHDVALEDAGYYRCV----------LTFAHEGQQ------YNITR 212

Query: 162 STNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPC---LTVGVPAPEIIWK 218
           S  +                    I S     +A+    + +PC   L  G P   ++W 
Sbjct: 213 SIEL--------RIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWW 264

Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT-HI-KVEATDQNT 264
           T +   +     G           +               V   D + 
Sbjct: 265 TANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHM 312

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 47.4 bits (112), Expect = 6e-06
 Identities = 21/181 (11%), Positives = 43/181 (23%), Gaps = 49/181 (27%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCE-------AKGEKPIGILWNMNNKRLDPKSDNRYTI 102
           +        + +    GEP  L+C        A     I + W+ N+       +    +
Sbjct: 17  SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM 76

Query: 103 REEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAS 162
                 +G    L +    + DS  + C  ++                            
Sbjct: 77  ---WAQDGA---LWLLPALQEDSGTYVCTTRN---------------------------- 102

Query: 163 TNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTV-----GVPAPEIIW 217
                     ++ L       A +   +     T +    L C  +          +I W
Sbjct: 103 ---ASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQW 159

Query: 218 K 218
            
Sbjct: 160 Y 160

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 46.7 bits (111), Expect = 6e-07
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 11/89 (12%)

Query: 43  PPLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTI 102
           P L   + P    +++ +     G+   L+C  + +    I W  +  +L     NR  I
Sbjct: 1   PTLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDVQS-INWLRDGVQLVE--SNRTRI 57

Query: 103 REEILPNGVLSDLSIKRTERGDSALFTCE 131
             E         + ++ +   DS L+ C 
Sbjct: 58  TGEE--------VEVRDSIPADSGLYACV 78

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 9e-07
 Identities = 27/205 (13%), Positives = 53/205 (25%), Gaps = 44/205 (21%)

Query: 13  RILLGRVLLPIGESSFHFDPELLNPSFNGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVLQ 72
            +   +     G           +           S   P  ++++ N +   G+  +L+
Sbjct: 120 ALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLR 179

Query: 73  CEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEI 132
           C+ +G       W +          +   ++   LP+  L       T   +    TC  
Sbjct: 180 CQVEGRGLEQAGWILTELEQ-----SATVMKSGGLPSLGL--TLANVTSDLNRKNVTCWA 232

Query: 133 KSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDN 192
                                          N   G+   +V ++ S        +    
Sbjct: 233 ------------------------------ENDV-GRAEVSVQVNVS------FPASVQL 255

Query: 193 FTATYTEDIKLPCLTVGVPAPEIIW 217
            TA       +P    G PAP + W
Sbjct: 256 HTAVEMHHWCIPFSVDGQPAPSLRW 280

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 9e-07
 Identities = 64/437 (14%), Positives = 118/437 (27%), Gaps = 161/437 (36%)

Query: 33  ELLNPSFNG---FPPLLLSSAPPEFEIK--LRNQTSRR----------GEPSVLQCEA-- 75
           E  +  +N    F    +S   P  +++  L      +          G+ + +  +   
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-TWVALDVCL 172

Query: 76  ----KGEKPIGILW-NMNNK---------------RLDPK----SDNRYTIREEI----- 106
               + +    I W N+ N                ++DP     SD+   I+  I     
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 107 ----------LPNG--VLSDLSIKR-------------TERGDSALFTCEIKSQKISSQQ 141
                       N   VL ++   +             T R    +    + +   +   
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR-FKQVTD-FLSAATTTHIS 290

Query: 142 MTYEASGLKKKQNY-IFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATY--- 197
           + + +  L   +   +          +  P + +T +P  R  + IA    +  AT+   
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQD-LPREVLTTNP--RRLSIIAESIRDGLATWDNW 347

Query: 198 --------TEDIK--LPCLT-----------------VGVPAP--EIIW---KTYHIRIV 225
                   T  I+  L  L                    +P     +IW       + +V
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407

Query: 226 AENEIGSS-----EPSDTVTI-----LTAEEAPSGPPTHIKV-------EATDQNTLKVS 268
                  S         T++I         +  +    H  +       +  D + L   
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL--- 464

Query: 269 WSPPERDHWNGVIQGY---YVGY---KETSTDKPFLFETV--DFSKEEGKEHHL------ 314
             PP  D        Y   ++G+        ++  LF  V  DF   E K  H       
Sbjct: 465 -IPPYLD-------QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516

Query: 315 ------TLSSLKTYTQY 325
                 TL  LK Y  Y
Sbjct: 517 SGSILNTLQQLKFYKPY 533

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 9/88 (10%)

Query: 48  SSAPPEF----EIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIR 103
           +   P +    +++ R            +C A G     + W  N K      ++R    
Sbjct: 1   NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQ--EHRIGGY 58

Query: 104 EEILPNGVLSDLSIKRTERGDSALFTCE 131
           +    +     L ++     D   +TC 
Sbjct: 59  KVRNQHWS---LIMESVVPSDKGNYTCV 83

>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C* Length = 199

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 14/116 (12%), Positives = 43/116 (37%), Gaps = 14/116 (12%)

Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
           +++T+ +++           +  +  L     P   P ++ +    ++ L+++W+    +
Sbjct: 69  LYQTFVVQLQDPR--EPRRQATQMLKLQNLVIPW-APENLTLHKLSESQLELNWNNRFLN 125

Query: 276 HWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQA 331
           H       + V Y+          +     +     H  +L S+    +Y+  V++
Sbjct: 126 H----CLEHLVQYRTDW-------DHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRS 170

>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C* Length = 199

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 15/128 (11%), Positives = 41/128 (32%), Gaps = 5/128 (3%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
           P   ++    +   +  +W                + Y   ++D   + +   +   E  
Sbjct: 1   PLPEVQCFVFNVEYMNCTWQSSS----EPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEI 56

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTI 370
                L   + +   + VVQ  +   P   + ++ +      P   P++ T   L+   +
Sbjct: 57  TSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPW-APENLTLHKLSESQL 115

Query: 371 RVSWVSPP 378
            ++W +  
Sbjct: 116 ELNWNNRF 123

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 21/177 (11%), Positives = 39/177 (22%), Gaps = 38/177 (21%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQC------EAKGEKPIGILWNMNNKRLDPKSDNRYT 101
                     +  Q         L C      + +  +   + W  + K L    DN + 
Sbjct: 100 EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL--DNIHF 157

Query: 102 IREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTA 161
              +         L +          +TC      +  Q                + +T 
Sbjct: 158 SGVK-------DRLIVMNVAEKHRGNYTCHASYTYLGKQ----------------YPITR 194

Query: 162 STNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWK 218
                                P  ++  N+         I+L C   G  +    WK
Sbjct: 195 VIEF-------ITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWK 244

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 23/196 (11%), Positives = 44/196 (22%), Gaps = 43/196 (21%)

Query: 62  TSRRGEPSVLQCEAKGEKPIG-ILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRT 120
            S   E  V  C     +  G I W  ++ +    ++    I         L        
Sbjct: 16  VSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRI---HQHKEKLW---FVPA 69

Query: 121 ERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSN 180
           +  DS  + C                                 +    +   +     + 
Sbjct: 70  KVEDSGHYYC-----------------------------VVRNSSYCLRIKISAKFVENE 100

Query: 181 RVPARIASFNDNFTATYTEDIKLPCLTV------GVPAPEIIWKTYHIRIVAENEIGSSE 234
                 A            D  L C  +          P++ W      ++ +N    S 
Sbjct: 101 PNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH-FSG 159

Query: 235 PSDTVTILTAEEAPSG 250
             D + ++   E   G
Sbjct: 160 VKDRLIVMNVAEKHRG 175

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 14/88 (15%), Positives = 22/88 (25%), Gaps = 7/88 (7%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL--- 107
           P              G    L C   G+      W  N   +D            +    
Sbjct: 209 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 268

Query: 108 ---PNGVLSDLSIKRTERGDSA-LFTCE 131
               + +++ L+I   E       FTC 
Sbjct: 269 NKRRSTLITVLNISEIESRFYKHPFTCF 296

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 16/91 (17%), Positives = 23/91 (25%), Gaps = 7/91 (7%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPK-------SDNRY 100
            S    F     +Q    G    L CEA G     I W    +  +         +    
Sbjct: 18  GSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDR 77

Query: 101 TIREEILPNGVLSDLSIKRTERGDSALFTCE 131
                       S +SI      D+  + C 
Sbjct: 78  VHIHATYHQHAASTISIDTLVEEDTGTYECR 108

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 13/90 (14%), Positives = 23/90 (25%), Gaps = 15/90 (16%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
             +  ++        G    L CE   +    I W  +   L             + P+ 
Sbjct: 10  EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPL------------PLPPSP 57

Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQ 140
           V   L +      D   ++C         Q
Sbjct: 58  V---LILPEIGPQDQGTYSCVATHSSHGPQ 84

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 7/92 (7%)

Query: 49  SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
           S+   +        + R E  VL CE        + W  + + +         +++E   
Sbjct: 11  SSWIVYPSGKVYVAAVRLERVVLTCELCRPWAE-VRWTKDGEEVVE--SPALLLQKE--- 64

Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQ 140
              +  L +   +  DS  + CEI  +  S  
Sbjct: 65  -DTVRRLVLPAVQLEDSGEYLCEIDDESASFT 95

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 32/220 (14%), Positives = 54/220 (24%), Gaps = 61/220 (27%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNMNNKRLDPKSDNRYTIREEILP 108
           A P+   +++          + +C + G +P   I W+ +   +   S     +   +  
Sbjct: 116 AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTV-- 173

Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
             V S   +  + + D    TC                                    E 
Sbjct: 174 -TVTSLWILVPSSQVDGKNVTC-----------------------------KVEHESFEK 203

Query: 169 QPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAP-EIIWK--------- 218
                V L+        I S  DN       +  L C     P P    W          
Sbjct: 204 PQLLTVNLTVYYPPEVSI-SGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF 262

Query: 219 ------TYHIRIV-----------AENEIGSSEPSDTVTI 241
                    IR V             N +G+ +   TV +
Sbjct: 263 AVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 47.9 bits (114), Expect = 6e-06
 Identities = 22/121 (18%), Positives = 38/121 (31%), Gaps = 12/121 (9%)

Query: 238 TVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPF 297
            V  +   E P  P     +E      + +SW PP  D    ++  Y +  +E       
Sbjct: 3   MVADVPEPEPPRFPI----IENILDEAVILSWKPPALDG-GSLVTNYTIEKREAMGGSWS 57

Query: 298 LFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPP 357
                 ++       + T+  L+   QY   + A NK G     E        G   +  
Sbjct: 58  PCAKSRYT-------YTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRR 110

Query: 358 Q 358
           +
Sbjct: 111 R 111

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 47.0 bits (111), Expect = 6e-06
 Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 2/89 (2%)

Query: 49  SAPPEFEIKLRNQTSRRGEPSVLQCEAKG-EKPIGILWNMNNKRL-DPKSDNRYTIREEI 106
            A P   +   +   ++G+   + C  K     +  +W   N +          +     
Sbjct: 186 KAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGD 245

Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIKSQ 135
                   L+I      DS +F C   + 
Sbjct: 246 FNYERQETLTISSARVDDSGVFMCYANNT 274

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 21/195 (10%), Positives = 43/195 (22%), Gaps = 53/195 (27%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
           +PP             G+   L C         + W       +   + +          
Sbjct: 11  SPPSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYFNEMVENKK---------- 56

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
              ++   ++ E   +  +TC   +   SS               Y+F            
Sbjct: 57  ---NEWIQEKAEATRTGTYTCSNSNGLTSSI--------------YVFV----------- 88

Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENE 229
                      R PA++             D  + C        +        + +  + 
Sbjct: 89  -----------RDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDL 137

Query: 230 IGSSEPSDTVTILTA 244
                P   +TI   
Sbjct: 138 TFVPNPKAGITIKNV 152

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 47.1 bits (111), Expect = 9e-06
 Identities = 25/181 (13%), Positives = 53/181 (29%), Gaps = 54/181 (29%)

Query: 62  TSRRGEPSVLQCEAKGEKPIGILWNMNNKRL------------DPKSDNRYTIREEILPN 109
             ++G+   L C A  +K I   W  +N+                K ++R   R  +   
Sbjct: 5   LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
           G    L IK  +  DS  + CE++ QK   Q + +                         
Sbjct: 65  GNFP-LIIKNLKIEDSDTYICEVEDQKEEVQLLVF------------------------- 98

Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENE 229
               +T +    +                + + L   +    +P +  ++   + +   +
Sbjct: 99  ---GLTANSDTHLLQG-------------QSLTLTLESPPGSSPSVQCRSPRGKNIQGGK 142

Query: 230 I 230
            
Sbjct: 143 T 143

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 51  PPEFEI--KLRNQTSRR-GEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           PP+  +   LR    R+ GE   L    +G+    ++W      LD    +R  +R    
Sbjct: 21  PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT---SRVHVRTS-- 75

Query: 108 PNGVLSDLSIKRTERGDSALFTCEIK 133
                +   +++  R DS  +   ++
Sbjct: 76  --DFDTVFFVRQAARSDSGEYELSVQ 99

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 4/90 (4%)

Query: 49  SAPPEFEIKLRNQTSRRGEPSVLQCEAKG--EKPIGILWNMNNKRLDPKSDNRYTIREEI 106
              P+  ++   Q++  G      C A    + P+   W  +N+ L       Y      
Sbjct: 8   FPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQ 67

Query: 107 LPNGVL--SDLSIKRTERGDSALFTCEIKS 134
               +   + L ++  E      + C I +
Sbjct: 68  GGELMEYTTILRLRNVEFTSEGXYQCVISN 97

>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens} Length = 238

 Score = 45.7 bits (107), Expect = 1e-05
 Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 14/136 (10%)

Query: 214 EIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPE 273
            +   +        +EI  +E +  +   T+ E    P    K    ++  + V+W+ PE
Sbjct: 116 SVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPE 175

Query: 274 RDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALN 333
                  ++GY +                  ++    E   T   L  +T Y+  + A  
Sbjct: 176 T---TEGLEGYILYKDGKKV-----------AEIGKDETSYTFKKLNRHTIYNFKIAAKY 221

Query: 334 KLGPGPMSEEVKQYTA 349
             G     E +   TA
Sbjct: 222 SNGEVSSKESLTLRTA 237

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 28/205 (13%), Positives = 45/205 (21%), Gaps = 48/205 (23%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCE-AKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
            PP    +     +       L C     +    I W  NN+ L    D     +     
Sbjct: 127 KPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELII--DGTKYSQSG--- 181

Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEG 168
                +L I   E  DS  + C                                 +    
Sbjct: 182 ----QNLIIHNPELEDSGRYDCY-----------------------------VHYDDVRI 208

Query: 169 QPSKNVTLSPSNRV-----PARIASFNDNFTATYTEDIKLPCLTVGVPAPE----IIWKT 219
           +    V+      V            +     T  E   + C  V          I W+ 
Sbjct: 209 KNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWEN 268

Query: 220 YHIRIVAENEIGSSEPSDTVTILTA 244
               I+  +    S  + +  I  A
Sbjct: 269 PSGWIIGLDFGVYSILTSSGGITEA 293

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 12/56 (21%), Positives = 20/56 (35%)

Query: 49  SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
            +  +  ++  +Q    G   VLQC A G       W  N   L  ++   Y +  
Sbjct: 1   GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPY 56

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 9/89 (10%)

Query: 45  LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIRE 104
             +     +  +++ N T +  +   L C +       I W  N++ L          R 
Sbjct: 104 FHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIGAN-IQWLFNSQSLQLTE------RM 156

Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIK 133
            +  N   S L I   +R D+  + CEI 
Sbjct: 157 TLSQNN--SILRIDPIKREDAGEYQCEIS 183

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 22/120 (18%)

Query: 12  PRILLGRVLLPIGESSFHFDPELLNPSFNGFPPLLLSSAPPEFEIKLRNQTSRRGEPSVL 71
           P  + G+             P++L P++       +           +      G     
Sbjct: 360 PEFVQGKEFKDF--------PDVLLPNYFTCRRARIRDRKA------QQVFVDEGHTVQF 405

Query: 72  QCEAKGEKPIGILWNM-NNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC 130
            C A G+ P  ILW       +  KS+ R T    + P+G    L ++  +  D+  + C
Sbjct: 406 VCRADGDPPPAILWLSPRKHLVSAKSNGRLT----VFPDGT---LEVRYAQVQDNGTYLC 458

>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine receptor, sugarbridge, fibronectine domain, signaling, cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC; 2.80A {Homo sapiens} Length = 219

 Score = 44.4 bits (104), Expect = 3e-05
 Identities = 22/150 (14%), Positives = 45/150 (30%), Gaps = 13/150 (8%)

Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
                   +   ++ G         +L     P+ PP  + V  T     ++SW     D
Sbjct: 69  FMADDIFSVQITDQSGQYSQECGSFLLAESIKPA-PPFDVTV--TFSGQYQISWRSDYED 125

Query: 276 HWNGVIQG---YYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQAL 332
               +++G   Y + Y+    D   +         + +   L     +  + Y + V+A 
Sbjct: 126 PAFYMLKGKLQYELQYRNRG-DPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAG 184

Query: 333 NKLGPGPM------SEEVKQYTAEGTPEQP 356
              G          S+ V   T     ++ 
Sbjct: 185 PMPGSSYQGTWSEWSDPVIFQTQSEELKEH 214

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 28/195 (14%), Positives = 52/195 (26%), Gaps = 39/195 (20%)

Query: 60  NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRL----DPKSDNRYTIREEILPNGVLSDL 115
             T   G    L+C+    +   +     + +           R T+ EE LP G     
Sbjct: 11  VYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKAL-F 69

Query: 116 SIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVT 175
            I   +  DS  + C +                                 G     K +T
Sbjct: 70  HIPSVQVRDSGQYRCLVIC-------------------------------GAAWDYKYLT 98

Query: 176 LSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHIRIVAENEIGSSEP 235
           +       + +           T +++L C   G P  E+ W+   +     +       
Sbjct: 99  V---KVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGL 155

Query: 236 SDTVTILTAEEAPSG 250
               ++L  +  PS 
Sbjct: 156 YQVTSVLRLKPQPSR 170

>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor); helical bundle, fibronectin type III domain, beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A {Homo sapiens} PDB: 3og4_B* Length = 226

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 13/154 (8%), Positives = 39/154 (25%), Gaps = 7/154 (4%)

Query: 216 IWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERD 275
           ++  +  R+   +    S   ++  +    E    PP  + +  T+   L  + +     
Sbjct: 74  LYNKFKGRVRTVSPSSKSPWVESEYLDYLFEVEPAPPV-LVLTQTE-EILSANATYQLPP 131

Query: 276 HWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKL 335
               +   Y V + +       LF      +                  + +  + +   
Sbjct: 132 CMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQPV-----QITLQPAASEHHCLSARTIYTF 186

Query: 336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQT 369
                S+  K         +     +    +  +
Sbjct: 187 SVPKYSKFSKPTCFLLEVPEANASGSSGGSSGTS 220

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 6/94 (6%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIG---ILWNMNNKR-LDPKSDNRYTIR 103
            S+   F  K +  T + GE      + K E  +    I W       L  K+     ++
Sbjct: 4   GSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLK 63

Query: 104 E--EILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135
           E  E        ++ I + +   +  + CE+  +
Sbjct: 64  ETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYK 97

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 44.9 bits (105), Expect = 5e-05
 Identities = 40/249 (16%), Positives = 71/249 (28%), Gaps = 23/249 (9%)

Query: 45  LLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKP---IGILWNMNNKRLDPKSDNRYT 101
           L +   P   E+         G+   L+C+ +G  P   + ++     K L         
Sbjct: 80  LTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELK-------- 131

Query: 102 IREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS-SQQMTYEASGLKKKQNYIFYVT 160
            RE  +        ++        A F+C  +        ++    S   + Q ++   T
Sbjct: 132 -REPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPAT 190

Query: 161 ASTNIGEGQPSKNVTLSPSNRV----PARIASF-----NDNFTATYTEDIKLPCLTVGVP 211
               +       +   +    +    P   A       +     T T           V 
Sbjct: 191 PPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVS 250

Query: 212 APEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSP 271
                  T  +         S E   TVTI  +  AP+   T  +V    + T+K    P
Sbjct: 251 VTAEDEGTQRLTCAVILGNQSQETLQTVTIY-SFPAPNVILTKPEVSEGTEVTVKCEAHP 309

Query: 272 PERDHWNGV 280
             +   NGV
Sbjct: 310 RAKVTLNGV 318

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 30/216 (13%), Positives = 48/216 (22%), Gaps = 72/216 (33%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
           + P   + L       G    ++CEA     + +                          
Sbjct: 282 SFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPR--------------- 326

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
              + L +K T   +   F+C                              A+  +    
Sbjct: 327 ---AQLLLKATPEDNGRSFSCS-----------------------------ATLEVAGQL 354

Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTE--DIKLPCLTVGVPAPEIIWK--------- 218
             KN T         R+   +     T+ E       C   G P PE+            
Sbjct: 355 IHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI 414

Query: 219 ------------TYHIRIVAENEIGSSEPSDTVTIL 242
                       TY     A +  G      TV +L
Sbjct: 415 GESVTVTRDLEGTY--LCRARSTQGEVTREVTVNVL 448

>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor complex, immune system; 2.52A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R Length = 214

 Score = 43.6 bits (102), Expect = 5e-05
 Identities = 18/138 (13%), Positives = 44/138 (31%), Gaps = 20/138 (14%)

Query: 218 KTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHW 277
             Y  R+ A +    S+ + T T  + +E      + + +E  +   +      P     
Sbjct: 73  NGYRARVRAVDGSRHSQWTVTNTRFSVDEVTLTVGS-VNLEIHN-GFILGKIQLPRPKMA 130

Query: 278 N---------GVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVV 328
                        + Y +  ++      F       + ++ K    +L +     ++ V 
Sbjct: 131 PAQDTYESIFSHFREYEIAIRKVPGQFTF-------THKKVKHEQFSLLTSGEVGEFCVQ 183

Query: 329 VQAL--NKLGPGPMSEEV 344
           V+    ++   G  S+E 
Sbjct: 184 VKPSVASRSNKGMWSKEE 201

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 43.4 bits (102), Expect = 6e-05
 Identities = 21/169 (12%), Positives = 46/169 (27%), Gaps = 21/169 (12%)

Query: 52  PEFEIKLRNQTSRRGEPSVLQCEA-KGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
             F                   +A K      + +  N K +      +  I       G
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRN---TG 59

Query: 111 VLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQP 170
           ++  + +++ +  D   +T +++  K ++         + KK            I +  P
Sbjct: 60  IIE-MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGP 118

Query: 171 SKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAP-EIIWK 218
                LS               +  T   ++ L C    +     I+W 
Sbjct: 119 HFVEYLS---------------WEVTGECNVLLKCKVANIKKETHIVWY 152

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 43.6 bits (102), Expect = 9e-05
 Identities = 29/213 (13%), Positives = 53/213 (24%), Gaps = 48/213 (22%)

Query: 47  LSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKP-------------------IGILWNM 87
           +   P +      +     G   VL C      P                   + I    
Sbjct: 10  MGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPS 69

Query: 88  NNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEAS 147
               +      R         +G    + + R E  D  ++ CE  +    +++     +
Sbjct: 70  MGVSVLAPYRERVEFLRPSFTDG---TIRLSRLELEDEGVYICEFATFPTGNRESQLNLT 126

Query: 148 GLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLT 207
            + K  N+I    A     +GQ  K +  +                              
Sbjct: 127 VMAKPTNWIEGTQAVLRAKKGQDDKVLVAT--------------------------CTSA 160

Query: 208 VGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVT 240
            G P   + W+T         EI +   + TV 
Sbjct: 161 NGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVI 193

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 6/91 (6%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIG---ILW-NMNNKRLDPKSDNRYTIRE-- 104
              F ++ ++     G          G   +    + W       L  K      + +  
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135
           +      L +L I   +   +  + CE+ ++
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTK 94

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 27/191 (14%), Positives = 44/191 (23%), Gaps = 49/191 (25%)

Query: 50  APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN 109
           + P   + L       G    ++CEA       +  N                     P 
Sbjct: 97  SFPAPNVILTKPEVSEGTEVTVKCEAHP--RAKVTLN----------------GVPAQPL 138

Query: 110 GVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQ 169
           G  + L +K T   +   F+C                              A+  +    
Sbjct: 139 GPRAQLLLKATPEDNGRSFSCS-----------------------------ATLEVAGQL 169

Query: 170 PSKNVTLSPSNRVPARIASFNDNFTATYTE--DIKLPCLTVGVPAPEIIWKTYHIRIVAE 227
             KN T         R+   +     T+ E       C   G P PE+         +  
Sbjct: 170 IHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI 229

Query: 228 NEIGSSEPSDT 238
            E  +      
Sbjct: 230 GESVTVTRDLE 240

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 33/208 (15%), Positives = 59/208 (28%), Gaps = 47/208 (22%)

Query: 44  PLLLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNMNNKRLDPKSDNRYTI 102
           P+ L        +++ ++    GEP  L+C A  +K    +L+  N K       N    
Sbjct: 75  PIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWN---- 130

Query: 103 REEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGLKKKQNYIFYVTAS 162
                     S+L+I +T    +  + C                             +  
Sbjct: 131 ----------SNLTILKTNISHNGTYHC-----------------------------SGM 151

Query: 163 TNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKTYHI 222
                     +VT+      P   AS            + L C T  +     +   +  
Sbjct: 152 GKHRYTSAGISVTVKELFPAPVLNASVTS--PLLEGNLVTLSCETKLLLQRPGLQLYFSF 209

Query: 223 RIVAENEIGSSEPSDTVTILTAEEAPSG 250
            + ++  +     S    ILTA    SG
Sbjct: 210 YMGSKT-LRGRNTSSEYQILTARREDSG 236

>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor, fibronectin type 3 fold, membrane and SOL glycosylation, immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens} PDB: 3di3_B* 3di2_B* Length = 223

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 22/159 (13%), Positives = 45/159 (28%), Gaps = 11/159 (6%)

Query: 205 CLTVGVPAPEIIWKTYHIRIVAENEI---GSSEPSDTVTILTAEEAPSGPPTHIKVE-AT 260
           CL           +T    ++ ++ I      +      I          P  + V    
Sbjct: 66  CLNFRKLQEIYFIETKKFLLIGKSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYRE 125

Query: 261 DQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLK 320
             N   V+++          +  + V Y++   +  +    +        +  L    L+
Sbjct: 126 GANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNL-----SSTKLTLLQRKLQ 180

Query: 321 TYTQYSVVVQA-LNKLGPGPMSEEVKQYTAEGTPEQPPQ 358
               Y + V++  +    G  SE    Y    TPE    
Sbjct: 181 PAAMYEIKVRSIPDHYFKGFWSEWSPSYYFR-TPEINNS 218

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 13/89 (14%)

Query: 44  PLLLSSAPPEFEI-KLRNQTSRRGEPSVLQCEAKGEKPI-GILWNMNNKRLDPKSDNRYT 101
           PL   S P    + + R+Q+ R G      C AK + P   ++W         +  N   
Sbjct: 2   PLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWT--------RLHNGKL 53

Query: 102 IREEILPNGVLSDLSIKRTERGDSALFTC 130
               +  NG+   L+I+  +  D+  + C
Sbjct: 54  PSRAMDFNGI---LTIRNVQPSDAGTYVC 79

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 10/102 (9%), Positives = 22/102 (21%), Gaps = 15/102 (14%)

Query: 48  SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL 107
           + +               G    + C         + W       +      Y       
Sbjct: 133 TPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKN 192

Query: 108 PNGVLS---------------DLSIKRTERGDSALFTCEIKS 134
             G+                 +L I+  +  D+    CE+ +
Sbjct: 193 QFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELAT 234

>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha; cytokine, leukemia inhibitory factor, cytokine receptor; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 38.4 bits (89), Expect = 6e-04
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 251 PPTHIKVEATDQNT--LKVSWSPPER-DHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE 307
           PP ++       N   L+V+W  P            +++ Y+    D+   ++ V+    
Sbjct: 10  PPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQ---WQHVEL--- 63

Query: 308 EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSE 342
                  T++      +Y + V A +    G  S+
Sbjct: 64  -SNGTAHTITDAYAGKEYIIQVAAKDN-EIGTWSD 96

>1fyh_B Interferon-gamma receptor alpha chain; cytokine-receptor complex, fibronectin type-III, immune system; 2.04A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1fg9_C 1jrh_I Length = 229

 Score = 40.1 bits (93), Expect = 8e-04
 Identities = 18/138 (13%), Positives = 40/138 (28%), Gaps = 12/138 (8%)

Query: 219 TYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT--------HIKVEATDQNTLKVSWS 270
           +  +R+ A      S  + +       +   GPP          I ++    +       
Sbjct: 80  SLWVRVKARVGQKESAYAKSEEFAVCRDGKIGPPKLDIRKEEKQIMIDIFHPSVFVNGDE 139

Query: 271 PP--ERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVV 328
                       I+ Y V  +   ++  +   T      +  +  L +      +QY V 
Sbjct: 140 QEVDYDPETTCYIRVYNVYVRMNGSEIQYKILTQKEDDCDEIQCQLAIPVSSLNSQYCVS 199

Query: 329 VQALNKLGP--GPMSEEV 344
            + +  +       S+EV
Sbjct: 200 AEGVLHVWGVTTEKSKEV 217

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	543
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	1e-20
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	4e-06
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	4e-04
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	1e-20
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	1e-06
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	2e-04
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	4e-20
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	8e-06
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	0.002
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	3e-15
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	8e-04
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	0.004
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	3e-15
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	0.004
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	3e-15
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	0.003
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	9e-15
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	6e-04
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	0.003
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	5e-14
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	3e-13
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	4e-04
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	4e-13
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	2e-12
d2cspa1	117	b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Ho	6e-12
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	1e-11
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	8e-04
d1wj3a_	117	b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo s	3e-11
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	4e-11
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	5e-11
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	0.003
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	8e-11
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	2e-10
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	9e-04
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	2e-10
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	0.004
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	3e-10
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	7e-04
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	3e-10
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	4e-10
d1x5aa1	94	b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse	4e-10
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	9e-10
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	0.002
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	9e-10
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	3e-08
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	1e-09
d1wfta_	123	b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus	1e-09
d2dtge1	102	b.1.2.1 (E:808-909) Insulin receptor {Human (Homo	3e-09
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	4e-09
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	4e-09
d2crma1	107	b.1.2.1 (A:8-114) Fibronectin type-III domain cont	1e-08
d2dtge3	125	b.1.2.1 (E:468-592) Insulin receptor {Human (Homo	2e-08
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	3e-08
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	3e-08
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	4e-08
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	0.001
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	5e-08
d2ibga1	95	b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit	5e-08
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	8e-08
d1fnfa2	91	b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m	9e-08
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	1e-07
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	3e-05
d1fnfa1	94	b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m	1e-07
d1iarb2	101	b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch	2e-07
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	2e-07
d1n26a3	104	b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c	5e-07
d1wfua_	120	b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat	6e-07
d2b5ib2	104	b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch	9e-07
d1bqua2	115	b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki	2e-06
d1bqua2	115	b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki	3e-04
d1qr4a2	88	b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu	2e-06
d1j8ka_	94	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	2e-06
d1fnha3	89	b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod	3e-06
d2ic2a1	107	b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit	3e-06
d1x4xa1	93	b.1.2.1 (A:8-100) Fibronectin type-III domain cont	3e-06
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	4e-06
d1qr4a1	87	b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus)	5e-06
d1cfba1	100	b.1.2.1 (A:610-709) Neuroglian, two amino proximal	5e-06
d1fnha1	90	b.1.2.1 (A:3-92) Fibronectin, different Fn3 module	7e-06
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	7e-06
d2cuma1	93	b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens)	9e-06
d2gysa2	114	b.1.2.1 (A:104-217) Common beta-chain in the GM-CS	9e-06
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-05
d1bpva_	104	b.1.2.1 (A:) Type I titin module {Human (Homo sapi	2e-05
d1tena_	90	b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId	2e-05
d1bqua1	95	b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-	3e-05
d1tdqa1	93	b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus)	3e-05
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	6e-05
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	6e-05
d1tdqa3	86	b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic	8e-05
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	8e-05
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	9e-05
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	1e-04
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	3e-04
d1y6kr1	99	b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10	3e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	3e-04
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	3e-04
d2haza1	101	b.1.2.1 (A:489-589) Neural cell adhesion molecule	5e-04
d1cd9b2	106	b.1.2.1 (B:108-213) Granulocyte colony-stimulating	5e-04
d1f6fb2	103	b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattu	5e-04
d1fnha2	90	b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu	6e-04
d2cuha1	102	b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens)	8e-04
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	0.001
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	0.001
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	0.001
d1cd9b1	107	b.1.2.1 (B:1-107) Granulocyte colony-stimulating f	0.001
d1v5ja_	108	b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId	0.002
d1uc6a_	109	b.1.2.1 (A:) Ciliary neurotrophic factor receptor	0.002
d2d9qb2	105	b.1.2.1 (B:204-308) Granulocyte colony-stimulating	0.002
d2vkwa2	93	b.1.2.1 (A:601-693) Neural cell adhesion molecule	0.003
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	0.003
d1k85a_	88	b.1.2.1 (A:) Fibronectin type III domain from chit	0.003
d2cuia1	101	b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens)	0.003
d3d85d3	94	b.1.2.1 (D:212-305) The p40 domain of interleukin-	0.003
d1owwa_	93	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	0.004
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	0.004

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.3 bits (210), Expect = 1e-20
 Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 236 SDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDK 295
           S   +  + E+ P   P +++V   +    +V W P       G +QGY + Y +T +  
Sbjct: 2   SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSS 61

Query: 296 PFLFETVDFS--KEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTP 353
                 ++      +G + H  L  L+ ++ Y++ V+ +N  G GP S +    T EG+ 
Sbjct: 62  KRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSG 121

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 4e-06
 Identities = 13/53 (24%), Positives = 22/53 (41%)

Query: 341 SEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVY 393
           S     ++ E  P   P +     + S    V W   PL +  G ++GY++ Y
Sbjct: 2   SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYY 54

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 4e-04
 Identities = 6/33 (18%), Positives = 10/33 (30%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPS 249
           +  Y + +   N  G    S      T E +  
Sbjct: 90  FSHYTLNVRVVNGKGEGPASPDRVFNTPEGSGP 122

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.9 bits (209), Expect = 1e-20
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 5/119 (4%)

Query: 239 VTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFL 298
           V + T  + PS  P ++ +E  +  ++ + W PP     NG I GY + Y++ S      
Sbjct: 2   VAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSD-- 59

Query: 299 FETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPP 357
              V  +   G +    +  L   T+Y+  V AL   G GP ++ +   T E   ++  
Sbjct: 60  ---VTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETR 115

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 1e-06
 Identities = 17/58 (29%), Positives = 25/58 (43%)

Query: 343 EVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWY 400
           +V   T    P   PQ+ +     S++I + W  P   T NG I GYK+ Y  +    
Sbjct: 1   DVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKS 58

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 7/36 (19%), Positives = 13/36 (36%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPP 252
              Y+ R+ A    G+   +D ++  T E       
Sbjct: 80  GTEYNFRVAALTINGTGPATDWLSAETFESDLDETR 115

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (205), Expect = 4e-20
 Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 1/110 (0%)

Query: 241 ILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFE 300
           I T E AP GPP  + ++     +++V+W  P+++  NGVI+GY +GY+E S      + 
Sbjct: 1   ISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYS 60

Query: 301 TVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
            V+  K  G     TL +LK + QY VVVQA N+ G GP S E+   T E
Sbjct: 61  IVEM-KATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLE 109

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 8e-06
 Identities = 21/67 (31%), Positives = 33/67 (49%)

Query: 348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDI 407
           T E  P+ PP D T   +TSQ+I+V+W +P     NGVI+GY++ Y  +        + +
Sbjct: 3   TEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIV 62

Query: 408 CTDIRAS 414
                  
Sbjct: 63  EMKATGD 69

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAE 245
           +  Y + + A N  G+   S  +   T E
Sbjct: 81  FAQYGVVVQAFNRAGTGPSSSEINATTLE 109

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (170), Expect = 3e-15
 Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 12/112 (10%)

Query: 239 VTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFL 298
           + ++T    P G P + K E   + ++ +SW+PP     +  I  Y + YK+    +   
Sbjct: 2   IQVITQTGVP-GQPLNFKAEPESETSILLSWTPPR----SDTIANYELVYKDGEHGEEQR 56

Query: 299 FETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
                            L  LK  + Y   + A +  G G  + E+   T +
Sbjct: 57  ITIEP-------GTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQ 101

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 8e-04
 Identities = 5/29 (17%), Positives = 12/29 (41%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAE 245
              Y+ R+ A +  G    +  ++  T +
Sbjct: 73  NSLYYFRLAARSPQGLGASTAEISARTMQ 101

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 0.004
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 343 EVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGD 402
           +++  T  G P   P +      +  +I +SW  P     +  I  Y++VY   +     
Sbjct: 1   DIQVITQTGVPG-QPLNFKAEPESETSILLSWTPP----RSDTIANYELVYKDGEHGEEQ 55

Query: 403 PKTDICT 409
             T    
Sbjct: 56  RITIEPG 62

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (169), Expect = 3e-15
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 246 EAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFS 305
           +A       I+ E   Q ++ + W  PE+   NG+I  Y + Y E   +           
Sbjct: 1   QAAPSQVVVIRQERAGQTSVSLLWQEPEQP--NGIILEYEIKYYEKDKEMQSYSTL---- 54

Query: 306 KEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
             +      T+S LK  T+Y   V+A    G G  S+ ++  T +
Sbjct: 55  --KAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGK 97

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 0.004
 Identities = 5/29 (17%), Positives = 10/29 (34%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAE 245
              Y  ++ A    G    S  + + T +
Sbjct: 69  GTRYVFQVRARTSAGCGRFSQAMEVETGK 97

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (169), Expect = 3e-15
 Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 3/113 (2%)

Query: 238 TVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPF 297
           T    T E  P+ PP  + V + +     +  +       NG I GY + Y      +  
Sbjct: 1   TAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIH 60

Query: 298 LFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
            +         G      +  L   T Y   +QA N  G GPMSE V+  T +
Sbjct: 61  DWVIEPVV---GNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPK 110

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAE 245
              Y+ +I A N  G    S+ V   T +
Sbjct: 82  DTPYYFKIQARNSKGMGPMSEAVQFRTPK 110

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (167), Expect = 9e-15
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 8/122 (6%)

Query: 230 IGSSEPS-DTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGY 288
           IG   PS   +   T ++ P GPP  I        ++++ W PP     NG+I  Y + +
Sbjct: 2   IGDGSPSHPPILERTLDDVP-GPPMGILFPEVRTTSVRLIWQPPAAP--NGIILAYQITH 58

Query: 289 KETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT 348
           +  +T        V            T + LK  + Y   + A  + G G  +E +   T
Sbjct: 59  RLNTTTANTATVEVL----APSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT 114

Query: 349 AE 350
            +
Sbjct: 115 EK 116

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 6e-04
 Identities = 13/52 (25%), Positives = 26/52 (50%)

Query: 130 CEIKSQKISSQQMTYEASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNR 181
                + ++     Y A+GLK +  Y+F +TA T  G G+ ++ + ++   R
Sbjct: 66  NTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKR 117

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 7/29 (24%), Positives = 13/29 (44%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAE 245
              Y  RI A+   G  E ++ + + T +
Sbjct: 88  ESVYLFRITAQTRKGWGEAAEALVVTTEK 116

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 5e-14
 Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 8/112 (7%)

Query: 239 VTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFL 298
             + T E+ P GP  H+        +LKVSW  P     NG++ GY + ++E +     +
Sbjct: 2   QLVRTHEDVP-GPVGHLSFSEILDTSLKVSWQEPGEK--NGILTGYRISWEEYNRTNTRV 58

Query: 299 FETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
              +             ++ L   T Y++ V A+   G G +S         
Sbjct: 59  THYLP-----NVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSGVP 105

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (154), Expect = 3e-13
 Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 11/112 (9%)

Query: 239 VTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFL 298
           V      + P GP  +++  A    ++ V+W  P     NG IQ Y + Y E  TDK   
Sbjct: 2   VETQPEVQLP-GPAPNLRAYAASPTSITVTWETPV--SGNGEIQNYKLYYMEKGTDKEQD 58

Query: 299 FETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
            +           H  T++ LK YT+YS  V A NK GPG  + +V   T  
Sbjct: 59  VDV--------SSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLS 102

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 4e-04
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEE 246
           +  Y  R+VA N+ G    +  V + T  +
Sbjct: 74  YTEYSFRVVAYNKHGPGVSTPDVAVRTLSD 103

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 63.4 bits (153), Expect = 4e-13
 Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 246 EAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFS 305
           + P   P ++  + T+ N L +SW+P      N     YYV +K             + +
Sbjct: 2   DVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWK----RDIPAAAWENNN 57

Query: 306 KEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEE-VKQYTAE 350
             + +++++ ++   T+ +Y + V A+N  G   ++ E V  Y+ E
Sbjct: 58  IFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGE 103

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.2 bits (147), Expect = 2e-12
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 3/101 (2%)

Query: 248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE 307
           P   P     +A ++ T+ + W      + N  I G+Y+ Y+ T +D    ++       
Sbjct: 1   PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMV--- 57

Query: 308 EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT 348
           EG  +  ++S L+  T Y + +Q  N+ G    S  +   T
Sbjct: 58  EGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICET 98

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 6e-12
 Identities = 24/120 (20%), Positives = 35/120 (29%), Gaps = 5/120 (4%)

Query: 239 VTILTAEEAPSGPPTHIKVEA-TDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPF 297
           V   T    P  PP  + V+A     T++VSW PP              GY   +  +  
Sbjct: 1   VEFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRV 60

Query: 298 LFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPP 357
                  +     E       L++     V V+ L+  G    S           P  P 
Sbjct: 61  AEVIFPTADSTAVELV----RLRSLEAKGVTVRTLSAQGESVDSAVAAVPPELLVPPTPH 116

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 1e-11
 Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 12/112 (10%)

Query: 245 EEAPS------GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFL 298
           E AP+        P  +         +K++W  P  D  +G    Y V Y +    +  +
Sbjct: 1   EHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDP-HGDNLTYSVFYTKEGIARERV 59

Query: 299 FETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
             T         E  +T+ +L   T Y   V A NK G G  S  ++  T  
Sbjct: 60  ENTSH-----PGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQP 106

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 8e-04
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEE 246
              Y  R++A+N+ GS E S  + + T  E
Sbjct: 78  ATVYIFRVMAQNKHGSGESSAPLRVETQPE 107

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 3e-11
 Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 11/124 (8%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S TV + T +  PS PP ++   ATD   + ++W   +       + GY V Y+ 
Sbjct: 1   GSSGSSGTVNVTTKKTPPSQPPGNVVWNATDTK-VLLNWEQVKAMENESEVTGYKVFYRT 59

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVK-QYTA 349
           +S          +  +            L     Y + V+A    G G  SE+++     
Sbjct: 60  SSQ---------NNVQVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRIT 110

Query: 350 EGTP 353
              P
Sbjct: 111 SSGP 114

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 4e-11
 Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 14/105 (13%)

Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
           G PT +       NT  + W PP+     G + GY + Y      +P   +         
Sbjct: 2   GRPTMMISTTAM-NTALLQWHPPKEL--PGELLGYRLQYCRADEARPNTIDF------GK 52

Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPE 354
            + H T++ L   T Y   + A N+ G G   E+  +     TPE
Sbjct: 53  DDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIR-----TPE 92

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 5e-11
 Identities = 33/134 (24%), Positives = 43/134 (32%), Gaps = 14/134 (10%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGV-------IQG 283
           GSS  S        E   S              T+ ++WSPP               + G
Sbjct: 1   GSSGSSGDEETKAFEALLSNIVK-PVASDIQARTVVLTWSPPSSLINGETDESSVPELYG 59

Query: 284 YYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEE 343
           Y V    T  D  +       S   G+E ++TL+ LK    Y   VQA      G  SE 
Sbjct: 60  YEVLISSTGKDGKY------KSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEA 113

Query: 344 VKQYTAEGTPEQPP 357
               T    P+ P 
Sbjct: 114 EIFTTLSCEPDIPN 127

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 9/37 (24%), Positives = 12/37 (32%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
              YH ++ AE       PS+     T    P  P  
Sbjct: 92  AMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPNP 128

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 8e-11
 Identities = 27/128 (21%), Positives = 42/128 (32%), Gaps = 9/128 (7%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S         +                 T++V+W+   +      IQGY V Y++
Sbjct: 1   GSSGSSGRQVQKELGDVLVRLHN---PVVLTPTTVQVTWTVDRQ---PQFIQGYRVMYRQ 54

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
           TS  +       +   +   E    L +LK    Y + V+       G  SE     T E
Sbjct: 55  TSGLQATSSWQ-NLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTE 113

Query: 351 GTPEQPPQ 358
            +   P  
Sbjct: 114 ESG--PSS 119

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 12/119 (10%)

Query: 236 SDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDK 295
           S  + +     AP  P     +   ++  + ++W+ P     N  +  Y +   E +   
Sbjct: 2   SAHLRVRQLPHAPEHP--VATLSTVERRAINLTWTKP--FDGNSPLIRYILEMSENNAPW 57

Query: 296 PFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPE 354
                TV  +  + K   +T+  L     Y   + A+N +G G  S++ ++ +    PE
Sbjct: 58  -----TVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVS---LPE 108

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 9e-04
 Identities = 7/30 (23%), Positives = 15/30 (50%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEE 246
            ++Y  R+ A N++G  + S     ++  E
Sbjct: 79  ARSYQFRLCAVNDVGKGQFSKDTERVSLPE 108

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.3 bits (132), Expect = 2e-10
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 6/103 (5%)

Query: 248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE 307
           P+  P H+ VE     T  + W PP+R    G I GY V Y    +++            
Sbjct: 1   PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGG-IDGYLVEYCLEGSEEWVPANKEP---- 55

Query: 308 EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
             +    T+  L T  +    V  +N  G    +  ++  T  
Sbjct: 56  -VERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIR 97

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 215 IIWKTYHIRIVAENEIGSSEPSDTVTILTAEE 246
                   R+V  N  G SEP+  +  +T  E
Sbjct: 67  PTGARILFRVVGVNIAGRSEPATLLQPVTIRE 98

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (132), Expect = 3e-10
 Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 8/109 (7%)

Query: 241 ILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFE 300
           I T        P   ++    +N+L + W  P        IQ + + + E   +  F   
Sbjct: 3   IFTTLSCEPDIPNPPRIANRTKNSLTLQWKAP--SDNGSKIQNFVLEWDEGKGNGEFC-- 58

Query: 301 TVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTA 349
                   G +    ++ L         + A N  G    SEEV  YT+
Sbjct: 59  ----QCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTS 103

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 7e-04
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTA 244
                 R+ A N+ G+S  S+ V   T+
Sbjct: 76  AMGCKFRLSARNDYGTSGFSEEVLYYTS 103

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.2 bits (132), Expect = 3e-10
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 11/119 (9%)

Query: 233 SEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETS 292
           S+P           +P   P    +    + ++ V+W P    +    IQ + V YK+  
Sbjct: 1   SQPDHG------RLSPPEAPDRPTISTASETSVYVTWIPR--GNGGFPIQSFRVEYKKLK 52

Query: 293 TDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEG 351
               +    +  S        + ++ L+    Y   V+ALN LG    S   + Y   G
Sbjct: 53  KVGDW---ILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 108

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 4e-10
 Identities = 14/103 (13%), Positives = 28/103 (27%), Gaps = 4/103 (3%)

Query: 248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE 307
           P  PP  ++      +T++++W+         +    Y   +  +           +   
Sbjct: 1   PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPA----NTKYKNA 56

Query: 308 EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
                   ++ LK  T Y   V           S      T E
Sbjct: 57  NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFE 99

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.5 bits (130), Expect = 4e-10
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 11/103 (10%)

Query: 247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
           A S     +K+   +   L+++W+     +  G +        +                
Sbjct: 1   AESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQM--------- 51

Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTA 349
               E  + L+ L+  T Y V V+ L  LGPGP S + +  T+
Sbjct: 52  --VLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTS 92

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 9e-10
 Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 9/105 (8%)

Query: 248 PSGPPTHIKVEATDQNT-LKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
           P GP    +++   +   +++ W PP  D     I  Y V       D+P          
Sbjct: 1   PPGPCLPPRLQGRPKAKEIQLRWGPPLVDG-GSPISCYSVEMSPIEKDEPREVYQ----- 54

Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEG 351
             G E   T+SSL     YS  ++A NK+G GP SE+    TA G
Sbjct: 55  --GSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPG 97

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTA 244
            KTY  R+ A N++G    S+   I TA
Sbjct: 68  GKTYSFRLRAANKMGFGPFSEKCDITTA 95

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 9e-10
 Identities = 16/166 (9%), Positives = 41/166 (24%), Gaps = 21/166 (12%)

Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
             P      +   + + + W PP     NG I  Y V ++  + D            E  
Sbjct: 4   SVPLDPISVSNSSSQIILKWKPPS--DPNGNITHYLVFWERQAED-----------SELF 50

Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQ------PPQDNTCT 363
           +  +           +S   ++ +         E         P+         ++++  
Sbjct: 51  ELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFR 110

Query: 364 TLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICT 409
                 +      P    +        V    ++  +   +  +  
Sbjct: 111 KTFEDYLHNVVFVPR--PSRKRRSLGDVGNAGNNEEHRPFEKVVNK 154

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 3e-08
 Identities = 19/143 (13%), Positives = 40/143 (27%), Gaps = 15/143 (10%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEEAP------SGPPTHIKVEATDQNTLKVSWS 270
            +T+     +E+    ++     +       P                 T ++ L     
Sbjct: 63  SRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVF 122

Query: 271 PPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQ 330
            P             VG    + +           ++   +  L +S L+ +T Y + +Q
Sbjct: 123 VPR--PSRKRRSLGDVGNAGNNEEHRPF-------EKVVNKESLVISGLRHFTGYRIELQ 173

Query: 331 ALNKLGPGPMSEEVKQYTAEGTP 353
           A N+  P          +A   P
Sbjct: 174 ACNQDTPEERCSVAAYVSARTMP 196

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 1e-09
 Identities = 27/127 (21%), Positives = 42/127 (33%), Gaps = 13/127 (10%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S         + P GPP+  +V    +N++ +SW P            Y +    
Sbjct: 1   GSSGSSGKN--YDLSDLP-GPPSKPQVTDVTKNSVTLSWQPG--TPGTLPASAYIIEAFS 55

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
            S    +            K    T+  L+  T Y  +V+A+N  G    S         
Sbjct: 56  QSVSNSW-----QTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVR-- 108

Query: 351 GTPEQPP 357
            T +  P
Sbjct: 109 -TQDSGP 114

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.9 bits (128), Expect = 1e-09
 Identities = 17/125 (13%), Positives = 39/125 (31%), Gaps = 16/125 (12%)

Query: 243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETV 302
           ++  +  G P+ +++     + + +SW PP     +G I  Y       +         +
Sbjct: 2   SSGSSGPGAPSTVRISKNV-DGIHLSWEPPT--SPSGNILEYSAYLAIRTAQMQDNPSQL 58

Query: 303 DFSKE----------EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGT 352
            F +              +         +       + A N+ G GP ++       +G 
Sbjct: 59  VFMRIYCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQIR---WLQGN 115

Query: 353 PEQPP 357
            +  P
Sbjct: 116 SKSGP 120

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 3e-09
 Identities = 14/106 (13%), Positives = 28/106 (26%), Gaps = 6/106 (5%)

Query: 245 EEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDF 304
           E         +  E  + N + + W  P+  +   V+                       
Sbjct: 1   EAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFA 60

Query: 305 SKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
            +              +   YSV ++A +  G G  +E    Y  +
Sbjct: 61  LERG------CRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTD 100

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 4e-09
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 2/101 (1%)

Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
             P  +          ++SW+ P     NG I  Y V Y   + D   +        +  
Sbjct: 4   SEPGRLAFNVVSSTVTQLSWAEP--AETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNP 61

Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
           K   L + +L+    Y   V+A N  G GP  E +     +
Sbjct: 62  KNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQ 102

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 4e-09
 Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 10/89 (11%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
            PT I       N+  V W           I GY + +           + V        
Sbjct: 3   SPTGIDFSDITANSFTVHWIA-----PRATITGYRIRHHPEHFSGRPREDRVP-----HS 52

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGP 339
            + +TL++L   T+Y V + ALN     P
Sbjct: 53  RNSITLTNLTPGTEYVVSIVALNGREESP 81

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 7/110 (6%)

Query: 239 VTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFL 298
           V   T  + P  P           ++ K++W PP +D+    I  Y V   E S    + 
Sbjct: 2   VEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPP-KDNGGATINKYVVEMAEGSNGNKW- 59

Query: 299 FETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT 348
                     G         L     Y + V  ++  G   +SE +   T
Sbjct: 60  -----EMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQT 104

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 19/121 (15%), Positives = 34/121 (28%), Gaps = 24/121 (19%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVD------- 303
                    T  + + + W P         + G+ + YKE        F+  D       
Sbjct: 4   ELLKFSYIRTSFDKILLRWEPYW-PPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSW 62

Query: 304 -----------FSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLG-----PGPMSEEVKQY 347
                         +        +  LK +TQY++ V+ L          G  S+ +   
Sbjct: 63  TVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQ 122

Query: 348 T 348
           T
Sbjct: 123 T 123

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.5 bits (117), Expect = 3e-08
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 8/92 (8%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
            P +++V +    +L + W     D+     Q Y V Y   + ++             G 
Sbjct: 3   APKNLRVGSRTATSLDLEW-----DNSEAEAQEYKVVYSTLAGEQYHEVLVPKGI---GP 54

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSE 342
               TL+ L   T+Y V + A+        + 
Sbjct: 55  TTKTTLTDLVPGTEYGVGISAVMNSKQSIPAT 86

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (116), Expect = 3e-08
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 255 IKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHL 314
           ++V A    +L +SW           ++ Y + Y ET  + P    TV      G +   
Sbjct: 3   LEVVAATPTSLLISWDA-----PAVTVRYYRITYGETGGNSPVQEFTVP-----GSKSTA 52

Query: 315 TLSSLKTYTQYSVVVQALNKLGPGPMSEE 343
           T+S LK    Y++ V A+   G  P S +
Sbjct: 53  TISGLKPGVDYTITVYAVTGRGDSPASSK 81

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 4e-08
 Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 9/103 (8%)

Query: 248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE 307
           PS  P  +   +    ++ +SW  PE+ +   +                      + S  
Sbjct: 1   PSTVPI-MHQVSATMRSITLSWPQPEQPNGIILDYEIR--------YYEKEHNEFNSSMA 51

Query: 308 EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
             + +   +  L+    Y V V+A    G G  S ++   T  
Sbjct: 52  RSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLT 94

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 5/30 (16%), Positives = 11/30 (36%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTVTILTAEE 246
              Y +++ A    G  + S  +   T  +
Sbjct: 66  GMVYVVQVRARTVAGYGKFSGKMCFQTLTD 95

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 5e-08
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 11/101 (10%)

Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
           G P +   +A     +  +W PP        ++ +  G  E+                + 
Sbjct: 3   GAPQNPNAKAAGSRKIHFNWLPPSGKPMGYRVKYWIQGDSESEAHL-----------LDS 51

Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
           K   + L++L  Y  Y + V A    G GP S  V   T +
Sbjct: 52  KVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQ 92

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.6 bits (114), Expect = 5e-08
 Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 5/98 (5%)

Query: 244 AEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVD 303
           A   P   P  +++E   +  + + WS                GY           E   
Sbjct: 2   AALDPMPVPELLEIEEYSETAVVLHWSLASDADE-----HLITGYYAYYRPSSSAGEYFK 56

Query: 304 FSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMS 341
            + E        ++ L+T T Y   +Q+ +       S
Sbjct: 57  ATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFS 94

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 8e-08
 Identities = 19/111 (17%), Positives = 43/111 (38%), Gaps = 3/111 (2%)

Query: 238 TVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPF 297
           T++     E P GPPT++ +      ++ + + P         I  + V  +     +  
Sbjct: 1   TISSGVPPELP-GPPTNLGISNIGPRSVTLQFRPG--YDGKTSISRWLVEAQVGVVGEGE 57

Query: 298 LFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT 348
            +  +     E     + +  L  +T YS  ++ +N +G  P S+  ++  
Sbjct: 58  EWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQ 108

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 9e-08
 Identities = 15/89 (16%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
           PPT ++      +T++V+W+P      +  +  + V Y     ++     ++        
Sbjct: 3   PPTDLRFTNIGPDTMRVTWAP----PPSIDLTNFLVRYSPVKNEEDVAELSIS-----PS 53

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGP 339
           ++ + L++L   T+Y V V ++ +     
Sbjct: 54  DNAVVLTNLLPGTEYVVSVSSVYEQHEST 82

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 1e-07
 Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 9/129 (6%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S        +     PP  +++      ++++SW+P + ++              
Sbjct: 1   GSSGSSGPTPAPVYD--VPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAM 58

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTA- 349
                           E          +L  Y  YS  V A+N +G    SE  +QY   
Sbjct: 59  HKPGLWH------HQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTK 112

Query: 350 EGTPEQPPQ 358
              P++ P 
Sbjct: 113 ASEPDKNPT 121

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 3e-05
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 217 WKTYHIRIVAENEIGSSEPSDTV-TILTAEEAPSGPPTHIKV 257
           +  Y  R++A N IG S PS+     LT    P   PT    
Sbjct: 84  YVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSGPS 125

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 1e-07
 Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 10/99 (10%)

Query: 248 PSGPPTHIKVEA-TDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
           P  PPT++ +EA  D   L VSW           I GY +    T+  +    E V    
Sbjct: 1   PLSPPTNLHLEANPDTGVLTVSWERSTTPD----ITGYRITTTPTNGQQGNSLEEV---- 52

Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPG-PMSEEV 344
               +   T  +L    +Y+V V  +       P+S+ +
Sbjct: 53  VHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTI 91

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 2e-07
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 2/93 (2%)

Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
             P ++ V     +TL ++WS P     +  +  +        ++       +       
Sbjct: 3   RAPGNLTVHTNVSDTLLLTWSNP--YPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLE 60

Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSE 342
               +  S+LK+   Y   V+A  +      SE
Sbjct: 61  PSLRIAASTLKSGISYRARVRAWAQAYNTTWSE 93

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 2e-07
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 7/101 (6%)

Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
             P    +       L + WS P     +     Y +  +E ++   F  +         
Sbjct: 2   SMPASPVLTKAGITWLSLQWSKPSGTPSDE-GISYILEMEEETSGYGFKPKYDG------ 54

Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
           ++   T+ +L+  T+Y   V A N  G    SE V+  T  
Sbjct: 55  EDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCP 95

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 5e-07
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 8/95 (8%)

Query: 250 GPPTHIKVEATDQN--TLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE 307
            PP +I V A  +N   L V+W  P   + +     + + Y+   +     +   D    
Sbjct: 3   DPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDL--- 59

Query: 308 EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSE 342
              +HH  +    +  ++ V ++A  + G G  SE
Sbjct: 60  ---QHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSE 91

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.2 bits (108), Expect = 6e-07
 Identities = 20/128 (15%), Positives = 32/128 (25%), Gaps = 10/128 (7%)

Query: 231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKE 290
           GSS  S           P   P    V     +++++ W                     
Sbjct: 1   GSSGSSGMEPHKVV---PLSKPHPPVVGKVTHHSIELYWDLE--QKEKRQGPQEQWLRFS 55

Query: 291 TSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
              + P +             H +    L+  T Y   ++  +  G    S  V   T  
Sbjct: 56  IEEEDPKMHSYGVIYTGYATRHVVE--GLEPRTLYKFRLKVTSPSGEYEYSPVVSVAT-- 111

Query: 351 GTPEQPPQ 358
            T E  P 
Sbjct: 112 -TRESGPS 118

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 9e-07
 Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 5/104 (4%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
            P  ++V   + +   +SW   +  H+      +              +E       + K
Sbjct: 5   APISLQVVHVETHRCNISWEISQASHYFERHLEFEARTL----SPGHTWEEAPLLTLKQK 60

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLG-PGPMSEEVKQYTAEGTP 353
           +  + L +L   TQY   V+     G     S   +       P
Sbjct: 61  QEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFRTKP 104

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 2e-06
 Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
            PP ++ V  +++ +  +  +       + +I  Y + Y+             D +    
Sbjct: 6   NPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTAS--- 62

Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSE---EVKQYTAEGTPEQPPQ 358
                T+  LK +T+Y   ++ + + G G  S+   E    T E  P + P 
Sbjct: 63  TRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPS 114

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 3e-04
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 217 WKTYHIRIVAENEIGS---SEPSDTVTILTAEEAPSGPPT 253
           +  Y  RI    E G    S+ S+  + +T E+ PS  P+
Sbjct: 75  FTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPS 114

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 11/90 (12%)

Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
           G P  I      +N+  VSW+PP        +  Y V Y   +        T +    +G
Sbjct: 2   GSPKGISFSDITENSATVSWTPPRSR-----VDSYRVSYVPITGG------TPNVVTVDG 50

Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGP 339
            +    L  L     Y+V + ++       
Sbjct: 51  SKTRTKLVKLVPGVDYNVNIISVKGFEESE 80

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 2e-06
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 10/89 (11%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
            P  +     D +++K++W  P+       +  Y V Y         LF   D     G+
Sbjct: 4   RPKGLAFTDVDVDSIKIAWESPQGQ-----VSRYRVTYSSPEDGIHELFPAPD-----GE 53

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGP 339
           E    L  L+  ++Y+V V AL+      
Sbjct: 54  EDTAELQGLRPGSEYTVSVVALHDDMESQ 82

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 3e-06
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
            P++++  AT  N+L VSW PP        I GY + Y++  +    +            
Sbjct: 3   APSNLRFLATTPNSLLVSWQPPRAR-----ITGYIIKYEKPGSPPREVVPRPR-----PG 52

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGP 339
               T++ L+  T+Y++ V AL       
Sbjct: 53  VTEATITGLEPGTEYTIYVIALKNNQKSE 81

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.9 bits (102), Expect = 3e-06
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 9/107 (8%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFL-------FETVD 303
           PPT   V      ++ + W  P   +    I  + V Y+     K +        +    
Sbjct: 2   PPTPPNVTRLSDESVMLRWMVP--RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 59

Query: 304 FSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
           ++ E GK    +++ LK    Y   + A+        S    ++  +
Sbjct: 60  WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ 106

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 3e-06
 Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 10/99 (10%)

Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
                 +V        +V+W  P        +  Y + +          +         G
Sbjct: 2   DQCKPPQVTCRSATCAQVNWEVPL--SNGTDVTEYRLEWGGVEGSMQICYC--------G 51

Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT 348
                 +  L   T Y   VQAL+ +G GP SE V   T
Sbjct: 52  PGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVT 90

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 43.2 bits (101), Expect = 4e-06
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 12/85 (14%)

Query: 50  APPEFEIKLRNQTS-RRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
           + P++E K       ++G+   + C+  G     ++W+ N K   P S  R T+ +    
Sbjct: 1   SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAK---PLSGGRATVTDS--- 54

Query: 109 NGVLSDLSIKRTERGDSALFTCEIK 133
                 L IK  + GD   + C   
Sbjct: 55  -----GLVIKGVKNGDKGYYGCRAT 74

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.9 bits (100), Expect = 5e-06
 Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 12/92 (13%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
            P  ++V    + TL + W  P        +       K+   + P              
Sbjct: 2   NPKDLEVSDPTETTLSLRWRRPVAKFDRYRLTYVSPSGKKNEMEIP------------VD 49

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSE 342
                L  L   T+Y++ + A         + 
Sbjct: 50  STSFILRGLDAGTEYTISLVAEKGRHKSKPTT 81

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 43.1 bits (100), Expect = 5e-06
 Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 7/101 (6%)

Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
             P    +     +  ++ W     +     I  Y + +  + T   +            
Sbjct: 7   NAPKLTGITCQA-DKAEIHWEQQGDNRSP--ILHYTIQFNTSFTPASWDAAYEKVPNT-- 61

Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
                 +  +  +  Y+  V A NK+G  P S      T +
Sbjct: 62  --DSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQ 100

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 7e-06
 Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 10/94 (10%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
            PT +K       +L   W+PP        ++                            
Sbjct: 2   APTDLKFTQVTPTSLSAQWTPPNVQLTGYRVRVTPKEKTGPMK----------EINLAPD 51

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEV 344
              + +S L   T+Y V V AL        ++ V
Sbjct: 52  SSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGV 85

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 7e-06
 Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
            P+   ++++QT  +G  +  +    G+      W  N  +++      +   E+     
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN---- 59

Query: 111 VLSDLSIKRTERGDSALFTCEIK 133
            + +L I+     DSA    +  
Sbjct: 60  -VCELVIRDVTGEDSASIMVKAI 81

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 9e-06
 Identities = 13/94 (13%), Positives = 26/94 (27%), Gaps = 12/94 (12%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
            P  ++ +     T  ++W+            GY + +           + +      G 
Sbjct: 4   APRDLEAKEVTPRTALLTWTE-----PPVRPAGYLLSFHT----PGGQTQEILLP---GG 51

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEV 344
                L  L   T Y+  +QA+      P     
Sbjct: 52  ITSHQLLGLFPSTSYNARLQAMWGQSLLPPVSTS 85

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 9e-06
 Identities = 10/93 (10%), Positives = 25/93 (26%), Gaps = 1/93 (1%)

Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
             P  +++    Q+   ++WS       +  +    + ++         +E         
Sbjct: 7   PEPRDLQISTD-QDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNT 65

Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSE 342
            +  L    L   + Y   V+     G      
Sbjct: 66  SQATLGPEHLMPSSTYVARVRTRLAPGSRLSGR 98

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 6/82 (7%)

Query: 52  PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGV 111
           P+      +Q  R GE   L  +  G +PI   W    K++      +      +  +  
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMK------VENSEN 54

Query: 112 LSDLSIKRTERGDSALFTCEIK 133
            S L+I    +     +T  ++
Sbjct: 55  GSKLTILAARQEHCGCYTLLVE 76

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 2e-05
 Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 7/105 (6%)

Query: 247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
           +P  PP         ++T+ + W+ PE      +           +         +  + 
Sbjct: 1   SPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNG------RWLKANF 54

Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLGP-GPMSEEVKQYTAE 350
               E+  T+S L     Y   V A N  G   P SE     T  
Sbjct: 55  SNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCR 99

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 2e-05
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 10/94 (10%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
            P+ I+V+     T  ++W  P  +     I G  + Y             +        
Sbjct: 4   APSQIEVKDVTDTTALITWFKPLAE-----IDGIELTYGIKDVPGDRTTIDLTED----- 53

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEV 344
           E+  ++ +LK  T+Y V + +         ++E 
Sbjct: 54  ENQYSIGNLKPDTEYEVSLISRRGDMSSNPAKET 87

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 11/91 (12%), Positives = 24/91 (26%), Gaps = 8/91 (8%)

Query: 248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE 307
           P   P ++     +   ++  W          +   + +  +               +K 
Sbjct: 3   PPEKPKNLSCIVNEGKKMRCEWDGGRE---THLETNFTLKSEW-----ATHKFADCKAKR 54

Query: 308 EGKEHHLTLSSLKTYTQYSVVVQALNKLGPG 338
           +         S   +    V V+A N LG  
Sbjct: 55  DTPTSCTVDYSTVYFVNIEVWVEAENALGKV 85

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 13/94 (13%), Positives = 26/94 (27%), Gaps = 10/94 (10%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
            PT I V         V W+P         +    + Y     +       +        
Sbjct: 6   GPTQILVRDVSDTVAFVEWTP-----PRAKVDFILLKYGLVGGEGGKTTFRLQ-----PP 55

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEV 344
               ++ +L+  ++Y V + A+        S   
Sbjct: 56  LSQYSVQALRPGSRYEVSISAVRGTNESDASSTQ 89

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.9 bits (92), Expect = 6e-05
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 6/82 (7%)

Query: 52  PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGV 111
           P F +K        G+ +   C      P  + W+ +++        + +++     NG 
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRE------LKQSVKYMKRYNGN 55

Query: 112 LSDLSIKRTERGDSALFTCEIK 133
              L+I R +  D   +T   K
Sbjct: 56  DYGLTINRVKGDDKGEYTVRAK 77

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.2 bits (93), Expect = 6e-05
 Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 51  PPEFEIK--LRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
           PP  + +  + N T+  G+   L C+A G     + W  +        +N     E+ + 
Sbjct: 3   PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKD----GEPIENEEEDDEKHIF 58

Query: 109 NGVLSDLSIKRTERGDSALFTCEIKSQ 135
           +   S+L+I+  ++ D A + C  +++
Sbjct: 59  SDDSSELTIRNVDKNDEAEYVCIAENK 85

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.5 bits (91), Expect = 8e-05
 Identities = 12/92 (13%), Positives = 26/92 (28%), Gaps = 12/92 (13%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
            P  + V A+ + ++ + W+       +  I         +    P              
Sbjct: 3   SPRDLMVTASSETSISLIWTKASGPIDHYRITFTPSSGISSEVTVP------------RD 50

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSE 342
               TL+ L+   +Y + + A         S 
Sbjct: 51  RTSYTLTDLEPGAEYIISITAERGRQQSLEST 82

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 39.9 bits (92), Expect = 8e-05
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 5/85 (5%)

Query: 49  SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP 108
              P F   + +     G  +   C+ +G     ++W  ++  +      +    EE   
Sbjct: 6   HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG-- 63

Query: 109 NGVLSDLSIKRTERGDSALFTCEIK 133
                 L+I      D A +TC+  
Sbjct: 64  ---NCSLTISEVCGDDDAKYTCKAV 85

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 9e-05
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 2/87 (2%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIG-ILWNMNNKRLDPKSDNRYTIREEILPN 109
           PP  +    ++    GE ++L C+++   P+    W       D    N    R  +  +
Sbjct: 2   PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61

Query: 110 GVLSDLSIKRTERGDSA-LFTCEIKSQ 135
              S+L I+          + C   S 
Sbjct: 62  QGRSELHIENLNMEADPGQYRCNGTSS 88

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 57  KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLS 116
           +L + T+  GE   L+CE   +        +   +   +       R  I   G    L 
Sbjct: 6   QLEDTTAYCGERVELECEVSEDDAN-----VKWFKNGEEIIPGPKSRYRIRVEGKKHILI 60

Query: 117 IKRTERGDSALFTCEIKSQKISSQ 140
           I+   + D+A ++      + S++
Sbjct: 61  IEGATKADAAEYSVMTTGGQSSAK 84

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 8/94 (8%)

Query: 48  SSAPPEFEIKL-RNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI 106
           S   P  +  L  N ++  G      C+   +    I W  + ++   K         ++
Sbjct: 1   SRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKV 60

Query: 107 LP-------NGVLSDLSIKRTERGDSALFTCEIK 133
           L        +  +  L I+     D+  +TC   
Sbjct: 61  LKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAG 94

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 12/100 (12%), Positives = 29/100 (29%), Gaps = 6/100 (6%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
            P  +  EA   + + + W+P  +   +     Y V                  S+    
Sbjct: 6   SPPSVWFEAEFFHHI-LHWTPIPQQSEST---CYEVALLRYGI--ESWNSISQCSQTLSY 59

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE 350
           +       L     Y   V+A++       +    +++ +
Sbjct: 60  DLTAVTLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFSVD 99

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 9/91 (9%), Positives = 25/91 (27%), Gaps = 6/91 (6%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIG---ILWNMNNKRLDPKSDNRYTI---RE 104
              F ++ ++     G          G   +    + W             ++       
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 105 EILPNGVLSDLSIKRTERGDSALFTCEIKSQ 135
           +      L +L I   +   +  + CE+ ++
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTK 94

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 2/85 (2%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREE--ILP 108
           PP         ++  G  +VL C  +   P        +  + P +            + 
Sbjct: 2   PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 61

Query: 109 NGVLSDLSIKRTERGDSALFTCEIK 133
           N    +L        D+  ++CE +
Sbjct: 62  NPTTGELVFDPLSASDTGEYSCEAR 86

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 5e-04
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 4/99 (4%)

Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
             P+  +VE    +T +V +  PE      +++                +       E  
Sbjct: 4   SSPSIDQVEPYS-STAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK---EAS 59

Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT 348
            E  +T+  LK  T Y+V + ALN  G G +S   +  T
Sbjct: 60  MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 98

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 5e-04
 Identities = 13/97 (13%), Positives = 26/97 (26%), Gaps = 7/97 (7%)

Query: 246 EAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFS 305
              +       V +     L +SW P        + Q   + Y+       +        
Sbjct: 6   MLQALDIGP-DVVSHQPGCLWLSWKPW--KPSEYMEQECELRYQPQLKGANW----TLVF 58

Query: 306 KEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSE 342
                +    L  L     Y++ ++ +    PG  S 
Sbjct: 59  HLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSP 95

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 18/102 (17%), Positives = 29/102 (28%), Gaps = 10/102 (9%)

Query: 246 EAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNG--VIQGYYVGYKETSTDKPFLFETVD 303
           E P      +K     +  L V WSPP             Y +  K    ++  +  T  
Sbjct: 4   EPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHFTG- 62

Query: 304 FSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGP-GPMSEEV 344
                  +    +  L    +Y V  +     G     S+E 
Sbjct: 63  ------HQTQFKVFDLYPGQKYLVQTRCKPDHGYWSRWSQES 98

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 6e-04
 Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 12/99 (12%)

Query: 251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK 310
           PP   +V    + T+ +SW             G+ V     +   P           +  
Sbjct: 4   PPRRARVTDATETTITISWRTKTETIT-----GFQVDAVPANGQTPIQRTI------KPD 52

Query: 311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTA 349
               T++ L+  T Y + +  LN          +   TA
Sbjct: 53  VRSYTITGLQPGTDYKIYLYTLNDNARSSPV-VIDASTA 90

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 8e-04
 Identities = 19/117 (16%), Positives = 32/117 (27%), Gaps = 17/117 (14%)

Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
             PT ++     +    + W PP+       IQ    G      + P             
Sbjct: 2   DGPTQLRALNLTEGFAVLHWKPPQNPVDTYDIQVTAPGAPPLQAETPGSA---------- 51

Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCTTLT 366
                 L  L  +T Y+  V+ L        +          T  + P+D     +T
Sbjct: 52  --VDYPLHDLVLHTNYTATVRGLRGPNLTSPASITFT-----TGLEAPRDLEAKEVT 101

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 11/81 (13%), Positives = 21/81 (25%), Gaps = 6/81 (7%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
           P   E+         G+   L+C+ +G  P   L  +  +                    
Sbjct: 4   PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEP------ 57

Query: 111 VLSDLSIKRTERGDSALFTCE 131
                ++        A F+C 
Sbjct: 58  AEVTTTVLVRRDHHGAQFSCR 78

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 11/84 (13%), Positives = 30/84 (35%), Gaps = 10/84 (11%)

Query: 52  PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGV 111
           P++   + +  +  G      C A G+    + W  + + L  ++    +          
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGG-------- 53

Query: 112 LSDLSIKRTERGDSALFTCEIKSQ 135
             +L   +    DS ++ C  +++
Sbjct: 54  --ELRFSKLVLEDSGMYQCVAENK 75

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
            P F ++++N     G+ +  QC A G    G    +    +         +        
Sbjct: 2   TPHF-LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 60

Query: 111 VLSDLSIKRTERGDSALFTCEIKS 134
             +   +  T + D+  + C I++
Sbjct: 61  SFN---VVNTTKRDAGKYRCMIRT 81

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 2/92 (2%)

Query: 248 PSGPPTHIK-VEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
           P   P+++  +     N+L   W P    H                            +K
Sbjct: 4   PPASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSF-RSRADCQYQGDTIPDCVAK 62

Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPG 338
           +      +   +L  Y   ++ VQA N LG  
Sbjct: 63  KRQNNCSIPRKNLLLYQYMAIWVQAENMLGSS 94

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 21/108 (19%), Positives = 32/108 (29%), Gaps = 5/108 (4%)

Query: 146 ASGLKKKQNYIFYVTASTNIGEGQPSKNVTLSPSNRVPARIASFNDNFTATYTEDIKLPC 205
           +SGL   +  +   T    +    P + V       V                       
Sbjct: 5   SSGLSPPRGLVAVRTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETE 64

Query: 206 LTVGVPAPEIIWKTYHIRIVAENEIGSSEPSDTVTILTAEEAPSGPPT 253
           L V           Y  R+VA      S+PS+T  + T+    SGP +
Sbjct: 65  LLVPGLIK---DVLYEFRLVAFAGSFVSDPSNTANVSTSG--LSGPSS 107

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 9/95 (9%)

Query: 250 GPPTHIKVEATDQNT--LKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE 307
            PP ++       N   L+V+W  P            +           +         E
Sbjct: 9   DPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQH------VE 62

Query: 308 EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSE 342
                  T++      +Y + V A +    G  S+
Sbjct: 63  LSNGTAHTITDAYAGKEYIIQVAAKDN-EIGTWSD 96

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 11/110 (10%)

Query: 246 EAPSGPPTHIKVEATDQ--NTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVD 303
           E P         EA       L++SW P +        +       +       L   + 
Sbjct: 2   EPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHI-NQKCELRHKPQRGEASWALVGPLP 60

Query: 304 FSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSE---EVKQYTAE 350
                 +     L  L   T Y++ ++ +    PG  S+    ++  T E
Sbjct: 61  L-----EALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTE 105

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 8/100 (8%)

Query: 250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEG 309
             P        D N++KV+      D     I+ Y V Y+  S++           +   
Sbjct: 2   SAPKLEGQMGEDGNSIKVNLIKQ--DDGGSPIRHYLVRYRALSSEWKP------EIRLPS 53

Query: 310 KEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTA 349
              H+ L SL    +Y V V A N+ G    +  V +  A
Sbjct: 54  GSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAA 93

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 14/102 (13%), Positives = 26/102 (25%), Gaps = 2/102 (1%)

Query: 51  PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNG 110
              +  +    +   G+P  L+C  K       +                    +   N 
Sbjct: 3   VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI 62

Query: 111 VLSDLSIKRTERGDSALFTCEIKSQ--KISSQQMTYEASGLK 150
               L  +     D+  + C    Q   I S   T   + +K
Sbjct: 63  SFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDVK 104

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

 Score = 34.8 bits (79), Expect = 0.003
 Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 18/103 (17%)

Query: 247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
           AP+  PT++   A   +++ +SW+       N  + GY V                    
Sbjct: 3   APT-APTNLASTAQTTSSITLSWTAST---DNVGVTGYDVYNGTALA------------- 45

Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLG-PGPMSEEVKQYT 348
                   T+S L   T Y+  V+A +  G     S  V   T
Sbjct: 46  TTVTGTTATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 12/98 (12%), Positives = 30/98 (30%), Gaps = 3/98 (3%)

Query: 247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSK 306
           +     + + V     ++L+++W  P     + +++               L +      
Sbjct: 3   SRP-RLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVP 61

Query: 307 EEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEV 344
                H   L  L++ T YS+ +  L         +  
Sbjct: 62  G--TRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGT 97

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 0.003
 Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 13/95 (13%)

Query: 251 PPTHIKVEAT-DQNTLKVSWSPPE--RDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE 307
           PP +++++   +   ++VSW  P+      +     + V  +  S  +       D    
Sbjct: 4   PPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDK--- 60

Query: 308 EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSE 342
                  T +++      S+ V+A ++      SE
Sbjct: 61  -------TSATVICRKNASISVRAQDRYYSSSWSE 88

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 0.004
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 10/95 (10%)

Query: 249 SGPP-THIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKE 307
           SGP    I    +  N+  + W+ P+  H +  I  +                    +  
Sbjct: 1   SGPVEVFITETPSQPNSHPIQWNAPQPSHISKYILRWR---------PKNSVGRWKEATI 51

Query: 308 EGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSE 342
            G  +  T+  LK    Y   + ++ + G   ++ 
Sbjct: 52  PGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTR 86

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 51  PPEF-EIKLRNQTSRRGEPSVLQCEAKGEKP---IGILWNMNNKRLDPKSDNRYTIREEI 106
           PP    + L+      G+   ++C     +P   + +     N+ L  ++  +       
Sbjct: 1   PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPA--- 57

Query: 107 LPNGVLSDLSIKRTERGDSALFTCEIK 133
            P    +  +           F+C   
Sbjct: 58  -PQEATATFNSTADREDGHRNFSCLAV 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	543
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.62
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.62
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.61
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.6
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.59
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.57
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.56
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.56
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.56
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.56
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.56
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	99.54
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.53
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.53
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.52
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.52
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.51
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.51
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.5
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.49
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.48
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.47
d2avga1	110	Cardiac myosin binding protein C, different domain	99.46
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.46
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.46
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.45
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	99.45
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.45
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.43
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	99.43
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.43
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.43
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.42
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.42
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.41
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	99.41
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.41
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.41
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.41
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.4
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.4
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	99.39
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.38
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.38
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.38
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.38
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.38
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.38
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	99.37
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	99.37
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.37
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	99.36
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.36
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.36
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.36
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.35
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.35
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.35
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.35
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	99.35
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.34
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.34
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	99.33
d2crza1	97	Fibronectin type-III domain containing protein 3a,	99.33
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.33
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.33
d2crma1	107	Fibronectin type-III domain containing protein 3a,	99.33
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.33
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.33
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	99.32
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.3
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.3
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.3
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	99.28
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	99.28
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.27
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	99.27
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.27
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	99.26
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.26
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.26
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.26
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	99.25
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.25
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.25
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.25
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	99.25
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.24
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	99.24
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	99.24
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.23
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	99.22
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	99.22
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	99.22
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	99.22
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	99.22
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.21
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.21
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.21
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.2
d2crma1	107	Fibronectin type-III domain containing protein 3a,	99.2
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.2
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.2
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.19
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.19
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	99.19
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.18
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.17
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	99.17
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	99.17
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	99.17
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	99.17
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	99.17
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	99.16
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.16
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.16
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.16
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.15
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.15
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	99.15
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.15
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	99.14
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.14
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.14
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.14
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.14
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.14
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.14
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	99.14
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	99.13
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.13
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.12
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.12
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.11
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.11
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.11
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.11
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	99.1
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	99.09
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	99.09
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	99.06
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	99.05
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.04
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.04
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.04
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	99.04
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.04
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.03
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	99.02
d2crza1	97	Fibronectin type-III domain containing protein 3a,	99.02
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.02
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	99.01
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.01
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.0
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.0
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	98.99
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	98.99
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	98.99
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	98.98
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	98.98
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	98.97
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	98.97
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	98.97
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	98.96
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	98.96
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	98.95
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.94
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	98.93
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.92
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.92
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	98.9
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	98.9
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	98.9
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.9
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.9
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	98.88
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	98.88
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.88
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	98.87
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	98.84
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	98.84
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.82
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	98.8
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.77
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	98.76
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	98.74
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.74
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	98.73
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	98.72
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	98.7
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	98.68
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	98.68
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	98.66
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	98.62
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.6
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	98.6
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.59
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.58
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	98.57
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	98.57
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	98.57
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	98.57
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	98.56
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.55
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.53
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.52
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.39
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.39
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.38
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.35
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.35
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.33
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.32
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.32
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.31
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	98.31
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.31
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.3
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.3
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	98.29
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	98.29
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.29
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.28
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.28
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.27
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	98.26
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.26
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.25
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.25
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.25
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.24
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.24
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.24
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.23
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.21
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	98.2
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.18
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.18
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.18
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.16
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.16
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.16
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.15
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.15
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.15
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.13
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.13
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.13
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.13
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.12
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.12
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.11
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.11
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.1
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.1
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.09
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.09
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.09
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.08
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	98.07
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.07
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.06
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.05
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.05
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.04
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	98.04
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.04
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.03
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.02
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.02
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.01
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.01
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.0
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.0
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.99
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.99
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.98
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.97
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	97.96
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.95
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.95
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.95
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.95
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.94
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.93
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	97.93
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.93
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.93
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	97.92
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.92
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.92
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.92
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	97.91
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.9
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.9
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.89
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	97.89
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.88
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.88
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	97.87
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.87
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	97.87
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	97.87
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.86
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.86
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.85
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.84
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.84
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.83
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.82
d2avga1	110	Cardiac myosin binding protein C, different domain	97.82
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.82
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.82
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.82
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.81
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.81
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.8
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	97.8
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	97.79
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.79
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.79
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.78
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.78
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.78
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.77
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.77
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	97.77
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.76
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.75
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.74
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	97.72
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.72
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.7
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	97.7
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.69
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.69
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.68
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	97.67
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.66
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.66
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	97.64
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.63
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.62
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	97.61
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.6
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.6
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.59
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.56
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.55
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.55
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.54
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.54
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.53
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.53
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.49
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.48
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.46
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.46
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.45
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	97.44
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.43
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	97.42
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.42
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.41
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	97.4
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	97.4
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.4
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	97.39
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.39
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	97.37
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	97.37
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.37
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.37
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	97.35
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.35
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.35
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.34
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.34
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.3
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.3
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.29
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.29
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.29
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.29
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	97.28
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.28
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.28
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.28
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.26
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.26
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.25
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.24
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.24
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.24
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.23
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.23
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.23
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.22
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.21
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	97.2
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.2
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	97.2
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.19
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.18
d2qfra1	112	Purple acid phosphatase, N-terminal domain {Kidney	97.18
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.18
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.18
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.17
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	97.17
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.17
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.15
d1gxea_	130	Cardiac myosin binding protein C, different domain	97.15
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.14
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.14
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.13
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	97.13
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.13
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.13
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.13
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.13
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.1
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.1
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.1
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.09
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.08
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.08
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.07
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.07
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.07
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.05
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.05
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.03
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.03
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.02
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.01
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.0
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.0
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	96.99
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.99
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.98
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	96.97
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	96.96
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	96.95
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	96.94
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	96.94
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	96.89
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	96.88
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	96.88
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	96.88
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	96.88
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	96.86
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.86
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	96.84
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	96.84
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.83
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	96.83
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	96.82
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	96.81
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.79
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.78
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	96.78
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.76
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	96.76
d1xzwa1	119	Purple acid phosphatase, N-terminal domain {Sweet	96.7
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	96.64
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	96.59
d1pd6a_	94	Cardiac myosin binding protein C, different domain	96.56
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	96.49
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	96.49
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	96.49
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	96.48
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	96.46
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	96.45
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	96.35
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	96.3
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	96.25
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	96.15
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	96.1
d1f6fb1	96	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	95.83
d2hyma1	109	Interferon-alpha/beta receptor beta chain {Human (	95.72
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	95.56

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.62  E-value=5.7e-16  Score=114.59  Aligned_cols=79  Identities=16%  Similarity=0.347  Sum_probs=70.0

Q ss_pred             CeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEE
Q psy3718          52 PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCE  131 (543)
Q Consensus        52 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~  131 (543)
                      |.|+..|.++.+..|+++.|.|.+.|.|.|++.|+|||.+|..  +.++.+..        +.|.|.++..+|+|.|+|.
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~--~~~~~~~~--------~~L~i~~v~~~D~G~Y~C~   71 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS--QNRIEVSG--------GELRFSKLVLEDSGMYQCV   71 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCC--CSSEEEET--------TEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccc--cceeeeee--------eeEEEEeecccCCEEEEEE
Confidence            7899999999999999999999999999999999999999864  44555532        3799999999999999999


Q ss_pred             Eecccceee
Q psy3718         132 IKSQKISSQ  140 (543)
Q Consensus       132 a~n~~~sv~  140 (543)
                      |.|..|++.
T Consensus        72 a~N~~G~~~   80 (89)
T d1cs6a4          72 AENKHGTVY   80 (89)
T ss_dssp             EEETTEEEE
T ss_pred             EEeCCCEEE
Confidence            999988754

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.62  E-value=1e-15  Score=115.62  Aligned_cols=83  Identities=22%  Similarity=0.384  Sum_probs=72.2

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC  130 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  130 (543)
                      .|.|+..|.++.+.+|+++.|.|.+.|.|.|+|.|+||+.+|..  +.++.+.    .++..+.|.|.++..+|+|.|+|
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~--~~~~~~~----~~~~~~~L~I~~~~~~D~G~Y~C   74 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQ--SVKYMKR----YNGNDYGLTINRVKGDDKGEYTV   74 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCS--BTTBBCC----CSTTEEEEEESCCCSGGGSCEEE
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccce--eeEEEEE----ecCCeeEEEeCCCceecCEEEEE
Confidence            48999999999999999999999999999999999999999864  3344432    34556789999999999999999


Q ss_pred             EEeccccee
Q psy3718         131 EIKSQKISS  139 (543)
Q Consensus       131 ~a~n~~~sv  139 (543)
                      .|.|..|..
T Consensus        75 ~a~N~~G~~   83 (97)
T d1koaa1          75 RAKNSYGTK   83 (97)
T ss_dssp             EEEETTEEE
T ss_pred             EEEECCCEE
Confidence            999998875

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.61  E-value=1.2e-15  Score=116.43  Aligned_cols=86  Identities=15%  Similarity=0.305  Sum_probs=73.2

Q ss_pred             CCCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718          50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFT  129 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~  129 (543)
                      .+|.|...|.++.+.+|+++.|.|.+.|.|.|++.|+|||.+|...  .++.+..   .....+.|.|.+++.+|+|.|+
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~--~~~~~~~---~~~~~~~L~I~~~~~~D~G~Y~   81 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES--RHFQIDY---DEEGNCSLTISEVCGDDDAKYT   81 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCS--SSEEEEE---CTTCEEEEEESSCCGGGCEEEE
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccce--eeEeEEE---ecCceeeeEecCCCHHhCEEEE
Confidence            4689999999999999999999999999999999999999999743  4454432   2333568999999999999999


Q ss_pred             EEEecccceee
Q psy3718         130 CEIKSQKISSQ  140 (543)
Q Consensus       130 C~a~n~~~sv~  140 (543)
                      |.|.|..|.+.
T Consensus        82 C~a~N~~G~~~   92 (102)
T d1fhga_          82 CKAVNSLGEAT   92 (102)
T ss_dssp             EEEEETTEEEE
T ss_pred             EEEEECCcEEE
Confidence            99999988753

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.60  E-value=1.1e-15  Score=115.74  Aligned_cols=86  Identities=16%  Similarity=0.231  Sum_probs=72.1

Q ss_pred             CCCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718          50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFT  129 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~  129 (543)
                      .+|.|+..+.+..+.+|++++|.|.+.|.|.|++.|+||+.+|....  ++.+..   ..+..+.|.|.++..+|+|.|+
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~--~~~~~~---~~~~~~~L~I~~~~~~D~G~Y~   77 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSD--RIYWYW---PEDNVCELVIRDVTGEDSASIM   77 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCS--SEEEEE---EETTEEEEEECSCCGGGCEEEE
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeee--eeEEEe---ccceEEEEEeccCccccCEEEE
Confidence            47899999999999999999999999999999999999999996433  322211   1234568999999999999999


Q ss_pred             EEEecccceee
Q psy3718         130 CEIKSQKISSQ  140 (543)
Q Consensus       130 C~a~n~~~sv~  140 (543)
                      |.|.|..|.+.
T Consensus        78 c~a~N~~G~~~   88 (98)
T d1g1ca_          78 VKAINIAGETS   88 (98)
T ss_dssp             EEEEETTEEEE
T ss_pred             EEEEECCcEEE
Confidence            99999988853

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.8e-15  Score=114.09  Aligned_cols=92  Identities=18%  Similarity=0.241  Sum_probs=74.5

Q ss_pred             CeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEE
Q psy3718          52 PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCE  131 (543)
Q Consensus        52 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~  131 (543)
                      |.|+..|.++.+.+|+++.|.|.+.|.|.+++.|+||+.+|..  ..++.+..    .+..+.|.|.++..+|+|.|+|.
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~--~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y~C~   74 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQE--SEHMKVEN----SENGSKLTILAARQEHCGCYTLL   74 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCC--SSSEEEEE----CSSEEEEEETTCCTTTCEEEEEE
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeecc--CCcEEEEE----ecceeEEEEeeCCcccCEEEEEE
Confidence            6788889999999999999999999999999999999999864  34555432    23346899999999999999999


Q ss_pred             Eecccceeeeeeeeccccc
Q psy3718         132 IKSQKISSQQMTYEASGLK  150 (543)
Q Consensus       132 a~n~~~sv~~~~~~v~~l~  150 (543)
                      |.|..|... ..+.|.++.
T Consensus        75 a~N~~G~~~-~~~~l~V~~   92 (101)
T d2cqva1          75 VENKLGSRQ-AQVNLTVVD   92 (101)
T ss_dssp             EECSSCEEE-CCEEEEEEC
T ss_pred             EEECCCEEE-EEEEEEEEe
Confidence            999988743 334444443

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.59  E-value=2.6e-15  Score=113.24  Aligned_cols=89  Identities=16%  Similarity=0.193  Sum_probs=71.1

Q ss_pred             eecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718          56 IKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        56 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      ..+.++.+.+|+++.|.|.+.|.|.|.+.|+|+|.++......++...    .......|.|.+++.+|+|.|+|.|.|.
T Consensus         8 ~~~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~----~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   83 (97)
T d1biha3           8 YVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRH----NRTSGKRLLFKTTLPEDEGVYTCEVDNG   83 (97)
T ss_dssp             EECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESC----SSSTTSEEEESSCCGGGCEEEEEEECCS
T ss_pred             eCCCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeee----eecCCCEEEEEeccccccEEEEEEEEEC
Confidence            345789999999999999999999999999999999975554445432    1223357999999999999999999999


Q ss_pred             cceeeeeeeeccc
Q psy3718         136 KISSQQMTYEASG  148 (543)
Q Consensus       136 ~~sv~~~~~~v~~  148 (543)
                      .|..+.....|.+
T Consensus        84 ~G~~~s~s~~L~V   96 (97)
T d1biha3          84 VGKPQKHSLKLTV   96 (97)
T ss_dssp             SSSCEEEEEEEEE
T ss_pred             CCcEEEEEEEEEE
Confidence            8886655555543

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.57  E-value=2.2e-15  Score=112.74  Aligned_cols=84  Identities=12%  Similarity=0.198  Sum_probs=71.7

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC  130 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  130 (543)
                      +|.|..++.++.+.+|+++.|.|.+.|.|.|++.|++++..+....  ++.+..    .+..+.|.|.++..+|+|.|+|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~--~~~~~~----~~~~~~L~I~~~~~~D~G~Y~c   75 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAP--ELLVDA----KSSTTSIFFPSAKRADSGNYKL   75 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCST--TSEEEE----ETTEEEEECTTBCGGGCEEEEE
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeee--eeeecc----cccceeeccccccccccEEEEE
Confidence            6899999999999999999999999999999999999999986443  343332    2344689999999999999999


Q ss_pred             EEecccceee
Q psy3718         131 EIKSQKISSQ  140 (543)
Q Consensus       131 ~a~n~~~sv~  140 (543)
                      .|.|..|+..
T Consensus        76 ~a~N~~G~~~   85 (93)
T d1wiua_          76 KVKNELGEDE   85 (93)
T ss_dssp             EEEETTEEEE
T ss_pred             EEEECCCEEE
Confidence            9999988853

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.56  E-value=1.7e-15  Score=114.32  Aligned_cols=89  Identities=21%  Similarity=0.358  Sum_probs=73.0

Q ss_pred             CCCeEEeecceeEeecC---CCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCc
Q psy3718          50 APPEFEIKLRNQTSRRG---EPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSA  126 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g---~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G  126 (543)
                      .+|.|+..|.+..+..|   ++++|.|.+.|.|.|.+.|++||.++....+.++...     ++  ..|.|..+..+|+|
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~-----~~--~~l~i~~~~~~d~G   75 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV-----AG--DLVISNPVKAKDAG   75 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEE-----TT--EEEEESCCHHHHCE
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEee-----ee--eEEEEecccccCCE
Confidence            47999999999888776   7899999999999999999999999976655555432     22  46888889999999


Q ss_pred             cEEEEEecccceeeeeeee
Q psy3718         127 LFTCEIKSQKISSQQMTYE  145 (543)
Q Consensus       127 ~Y~C~a~n~~~sv~~~~~~  145 (543)
                      .|+|.|.|..|++.+.+..
T Consensus        76 ~Y~C~a~N~~G~~~S~~a~   94 (97)
T d1cs6a1          76 SYQCVATNARGTVVSREAS   94 (97)
T ss_dssp             EEEEEEEETTEEEECCCEE
T ss_pred             EEEEEEEECCCEEEEEEEE
Confidence            9999999999987544443

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.56  E-value=2.6e-15  Score=111.08  Aligned_cols=78  Identities=24%  Similarity=0.523  Sum_probs=66.7

Q ss_pred             CCeEEeecce-eEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718          51 PPEFEIKLRN-QTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFT  129 (543)
Q Consensus        51 ~p~~~~~~~~-~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~  129 (543)
                      +|.|...|.. +.+.+|+++.|.|.+.|.|.|++.|+||+.+|.   ..++.+..        ..|.|.++..+|+|.|+
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~---~~~~~~~~--------~~L~i~~v~~~d~G~Y~   70 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS---GGRATVTD--------SGLVIKGVKNGDKGYYG   70 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECC---SSSEEEET--------TEEEESSCCSTTCEEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCc---cccEEEee--------eeEEECCCChhhCEEEE
Confidence            6888887755 678999999999999999999999999999984   33555432        25999999999999999


Q ss_pred             EEEeccccee
Q psy3718         130 CEIKSQKISS  139 (543)
Q Consensus       130 C~a~n~~~sv  139 (543)
                      |.|.|..|..
T Consensus        71 C~a~N~~G~~   80 (89)
T d1biha4          71 CRATNEHGDK   80 (89)
T ss_dssp             EEEEETTEEE
T ss_pred             EEEEECCCEE
Confidence            9999998875

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.7e-15  Score=111.10  Aligned_cols=85  Identities=18%  Similarity=0.280  Sum_probs=67.6

Q ss_pred             ecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccc
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQK  136 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  136 (543)
                      .|.++.+.+|+++.|.|.+.|.|.|.+.|+||+.++...+..++...    .....+.|.|.+++.+|+|.|+|.|+|..
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~----~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   77 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVS----EQHWIGFLSLKSVERSDAGRYWCQVEDGG   77 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEE----TTEEEEEEEESSCCGGGCEEEEEEESSCT
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeec----ccCceeeEEECCCCcccCEEEEEEEEECC
Confidence            36789999999999999999999999999999999864332222221    34445689999999999999999999998


Q ss_pred             ceeeeeeee
Q psy3718         137 ISSQQMTYE  145 (543)
Q Consensus       137 ~sv~~~~~~  145 (543)
                      |...+.+..
T Consensus        78 G~~~S~~~~   86 (91)
T d1rhfa1          78 ETEISQPVW   86 (91)
T ss_dssp             TCEECCCEE
T ss_pred             CCEEEEEEE
Confidence            875443333

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.56  E-value=2.1e-15  Score=113.20  Aligned_cols=87  Identities=16%  Similarity=0.294  Sum_probs=70.9

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeeccCCc-eEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPI-GILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFT  129 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~  129 (543)
                      +|.|...|.++.+.+|+++.|.|.+.|.|.| .+.|++||.++.... .++.+..   .+   ++|.|.++..+|+|.|+
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~-~~~~~~~---~~---~~L~i~~v~~~D~G~Y~   74 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQE-HNAALRK---DE---GSLVFLRPQASDEGHYQ   74 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTT-TTEEECT---TS---CCEEESSCCGGGCEEEE
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeec-ceeeecc---cc---eEEEEeccChhcCeEEE
Confidence            6899999999999999999999999999865 799999999986443 3333321   12   47999999999999999


Q ss_pred             EEEecccceeeeeee
Q psy3718         130 CEIKSQKISSQQMTY  144 (543)
Q Consensus       130 C~a~n~~~sv~~~~~  144 (543)
                      |.|.|..|++.....
T Consensus        75 C~a~N~~G~~~s~~v   89 (94)
T d1biha1          75 CFAETPAGVASSRVI   89 (94)
T ss_dssp             EEEEETTEEEECCCE
T ss_pred             EEEEeCCCEEEEEEE
Confidence            999999988654433

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=9.4e-15  Score=106.50  Aligned_cols=79  Identities=23%  Similarity=0.350  Sum_probs=65.5

Q ss_pred             CeEEeecceeEeecCCCeEEEEEeeccCCc-eEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718          52 PEFEIKLRNQTSRRGEPSVLQCEAKGEKPI-GILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC  130 (543)
Q Consensus        52 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  130 (543)
                      |.|+..|.+..+.+|+++.|.|.+.|.|.| ++.|+|||.++.....               ..+.|.....+|+|.|+|
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~---------------~~~~l~~~~~~d~G~Y~C   66 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---------------SPSVLNVTGVTQSTMFSC   66 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE---------------SSEEEEECCCSSCEEEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCC---------------cceEEecCCccccEEEEE
Confidence            889999999999999999999999999987 9999999999853211               235667777889999999


Q ss_pred             EEecccceeeeeeee
Q psy3718         131 EIKSQKISSQQMTYE  145 (543)
Q Consensus       131 ~a~n~~~sv~~~~~~  145 (543)
                      .|+|..|...+....
T Consensus        67 ~A~N~~G~~~S~~~~   81 (85)
T d1rhfa2          67 EAHNLKGLASSRTAT   81 (85)
T ss_dssp             EEEETTEEEECCCEE
T ss_pred             EEEcCCCcEEEEEEE
Confidence            999998875444433

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5e-15  Score=116.65  Aligned_cols=110  Identities=25%  Similarity=0.456  Sum_probs=90.5

Q ss_pred             EEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCC
Q psy3718         240 TILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSL  319 (543)
Q Consensus       240 ~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L  319 (543)
                      .++|..++|..+|.++.+...+++++.|+|+++.....++.+.+|.|+|+..+.....     ......+...++.|.+|
T Consensus         3 ~v~T~~~~P~~~P~~v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~~~-----~~~~~~~~~~~~~i~~L   77 (119)
T d1x5ha1           3 AVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDV-----TETLVSGTQLSQLIEGL   77 (119)
T ss_dssp             CCCCCCSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEE-----ECCBCCTTCCEEEEECC
T ss_pred             EEEcCCCCCCCCCcCeEEEEecCcEEEEEEEcccccCCCCCEEEEEEEEeecccccce-----eeeecCCCccEEEeCCC
Confidence            4677788898899999999999999999999987655578999999999886643211     11122556789999999


Q ss_pred             CCCCEEEEEEEEEeCCCCCCCCcceeeeccCCCCC
Q psy3718         320 KTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPE  354 (543)
Q Consensus       320 ~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t~~~~p~  354 (543)
                      +|++.|.|+|+|+|..|.|++|..+.++|.+..+.
T Consensus        78 ~p~t~Y~~~V~A~n~~G~G~~S~~~~~~T~~~~~~  112 (119)
T d1x5ha1          78 DRGTEYNFRVAALTINGTGPATDWLSAETFESDLD  112 (119)
T ss_dssp             CSSCEEEEECEEEETTEEEEECCCEEEECCSSCCC
T ss_pred             CCCCEEEEEEEEEcCCcCCCCCCCEEEEeCCCCCC
Confidence            99999999999999999999999999999766553

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3e-14  Score=110.36  Aligned_cols=108  Identities=39%  Similarity=0.734  Sum_probs=89.3

Q ss_pred             eccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCC
Q psy3718         242 LTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKT  321 (543)
Q Consensus       242 ~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p  321 (543)
                      .|.+++|+.+|.++.+...+++++.|.|.++.....++.+.+|.|.|+..+............ .......++.|.+|.|
T Consensus         2 ~T~~~~P~~pP~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p   80 (109)
T d1va9a1           2 STEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEM-KATGDSEVYTLDNLKK   80 (109)
T ss_dssp             CSSCCCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBC-CCCSSEEEEEEESCCS
T ss_pred             CCcCCCCCCCCcCcEEEEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeEE-ecCCCeeEEEECCCCc
Confidence            467788989999999999999999999999877666789999999999876554433222211 2245678999999999


Q ss_pred             CCEEEEEEEEEeCCCCCCCCcceeeeccC
Q psy3718         322 YTQYSVVVQALNKLGPGPMSEEVKQYTAE  350 (543)
Q Consensus       322 ~t~Y~~~V~a~n~~G~s~~s~~~~~~t~~  350 (543)
                      ++.|.|+|+|+|..|.|++|.++.++|.+
T Consensus        81 ~t~Y~~~V~a~n~~G~g~~S~~v~~~T~e  109 (109)
T d1va9a1          81 FAQYGVVVQAFNRAGTGPSSSEINATTLE  109 (109)
T ss_dssp             SCCEEEEEEEEETTEECCCCCCEECCCCS
T ss_pred             ceEEEEEEEEEcCCcCCCCCCCEEEEcCC
Confidence            99999999999999999999999998863

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=6.7e-15  Score=109.61  Aligned_cols=80  Identities=23%  Similarity=0.406  Sum_probs=68.9

Q ss_pred             CeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEE
Q psy3718          52 PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCE  131 (543)
Q Consensus        52 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~  131 (543)
                      +.|...|+++.+.+|+++.|.|.+.|.|.|.+.|+|++.++......++...    .+   ++|.|.+++.+|+|.|+|.
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~----~~---~~L~I~~~~~~D~G~Y~C~   74 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL----SN---NYLQIRGIKKTDEGTYRCE   74 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEEC----TT---SCEEETTCCGGGCEEEEEE
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeee----ee---eeEEECCCCHHhCEEEEEE
Confidence            6788889999999999999999999999999999999999977666666543    22   3699999999999999999


Q ss_pred             Eecccce
Q psy3718         132 IKSQKIS  138 (543)
Q Consensus       132 a~n~~~s  138 (543)
                      |.|..+.
T Consensus        75 a~n~~~~   81 (92)
T d1epfa2          75 GRILARG   81 (92)
T ss_dssp             EEEGGGT
T ss_pred             EEECcCC
Confidence            9997543

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.53  E-value=2.2e-15  Score=112.20  Aligned_cols=80  Identities=18%  Similarity=0.307  Sum_probs=67.5

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEe
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIK  133 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  133 (543)
                      |+.+|.++.+.+|+++.|.|.+.|.|.|.+.|++||.++....  ++.+.    ..+..+.|.|.++..+|+|.|+|.|.
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~--~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~a~   75 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA--RHQVT----TTKYKSTFEISSVQASDEGNYSVVVE   75 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSS--SCEEE----ECSSEEEEECSSCCSCCCEEEEEECB
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeeccccccc--ceeee----eecceeEEeecCCCHHHCEEEEEEEE
Confidence            5667899999999999999999999999999999999986543  33332    23345789999999999999999999


Q ss_pred             ccccee
Q psy3718         134 SQKISS  139 (543)
Q Consensus       134 n~~~sv  139 (543)
                      |..|+.
T Consensus        76 N~~G~~   81 (91)
T d1tnna_          76 NSEGKQ   81 (91)
T ss_dssp             CSSCBC
T ss_pred             ECCCEE
Confidence            998874

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=2.1e-14  Score=108.24  Aligned_cols=92  Identities=18%  Similarity=0.367  Sum_probs=71.4

Q ss_pred             eEEeecceeEeecCCCeEEEEEeeccCC-ceEEEcc-CCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718          53 EFEIKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNM-NNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC  130 (543)
Q Consensus        53 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  130 (543)
                      ++.+.|.+..+..|+++.|.|.+.|.|+ +.+.|++ ++..+.. ...++.+...   .+..+.|.|.+++.+|+|.|+|
T Consensus         2 ~V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~-~~~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C   77 (97)
T d1epfa1           2 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP-NQQRISVVWN---DDDSSTLTIYNANIDDAGIYKC   77 (97)
T ss_dssp             CEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECC-BSSSEEEEEE---ETTEEEEEECSCCGGGCEEEEE
T ss_pred             EEEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeee-ccccEEEEee---cCcceEEEcccCchhhceEEEE
Confidence            3566788899999999999999999985 7999998 5566543 4445555432   2344689999999999999999


Q ss_pred             EEecccceeeeeeeeccc
Q psy3718         131 EIKSQKISSQQMTYEASG  148 (543)
Q Consensus       131 ~a~n~~~sv~~~~~~v~~  148 (543)
                      .|+|..|.....+..|.+
T Consensus        78 ~a~N~~G~~~~~tv~l~V   95 (97)
T d1epfa1          78 VVTAEDGTQSEATVNVKI   95 (97)
T ss_dssp             EEEETTTEEEEEEEEEEE
T ss_pred             EEEeCCCcEEEEEEEEEE
Confidence            999998876556665543

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.8e-15  Score=111.98  Aligned_cols=95  Identities=16%  Similarity=0.117  Sum_probs=71.0

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeeccCC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFT  129 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~  129 (543)
                      .+.|+..+++..+..|+++.|.|.+.|.|. |.|.|+|++..+........... ..........|.|.++..+|+|.|+
T Consensus         3 ~~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~   81 (104)
T d2aw2a1           3 VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSW-KEEKNISFFILHFEPVLPNDNGSYR   81 (104)
T ss_dssp             CEECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEE-EECSSCEEEEEEESSCCGGGCEEEE
T ss_pred             ccEEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeE-EecCCceEEEEEEccccHHHCCeEE
Confidence            356677888999999999999999999984 89999999877643333222211 1112233457999999999999999


Q ss_pred             EEEecccceeeeeeeec
Q psy3718         130 CEIKSQKISSQQMTYEA  146 (543)
Q Consensus       130 C~a~n~~~sv~~~~~~v  146 (543)
                      |.|.|..|.+......+
T Consensus        82 C~A~N~~G~~~s~~~~l   98 (104)
T d2aw2a1          82 CSANFQSNLIESHSTTL   98 (104)
T ss_dssp             EEEEETTEEEECCCEEE
T ss_pred             EEEEcCCCeEEEEEEEE
Confidence            99999988865544444

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=1.5e-14  Score=109.89  Aligned_cols=87  Identities=18%  Similarity=0.387  Sum_probs=67.1

Q ss_pred             CCCeEEeecc--eeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          50 APPEFEIKLR--NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        50 ~~p~~~~~~~--~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      .||.|...+.  +..+..|+++.|.|.+.|.|.|.+.|+++|.++...........    .....+.|.|.+++.+|+|.
T Consensus         2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~   77 (100)
T d1qz1a3           2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHI----FSDDSSELTIRNVDKNDEAE   77 (100)
T ss_dssp             EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEE----ECTTSCEEEECSCCGGGCEE
T ss_pred             cCCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEE----eecCceEEEeCCCCcccCEE
Confidence            3788877655  45678899999999999999999999999999865433222111    11223589999999999999


Q ss_pred             EEEEEecccceee
Q psy3718         128 FTCEIKSQKISSQ  140 (543)
Q Consensus       128 Y~C~a~n~~~sv~  140 (543)
                      |+|.|.|..|++.
T Consensus        78 Y~C~a~N~~G~~~   90 (100)
T d1qz1a3          78 YVCIAENKAGEQD   90 (100)
T ss_dssp             EEEEEEETTEEEE
T ss_pred             EEEEEEECCCEEE
Confidence            9999999988853

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.51  E-value=9.3e-14  Score=106.40  Aligned_cols=102  Identities=22%  Similarity=0.402  Sum_probs=83.1

Q ss_pred             CCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCE
Q psy3718         245 EEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQ  324 (543)
Q Consensus       245 ~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~  324 (543)
                      +++|..+|.++++...+.+++.|+|.++.....++.+.+|.|.|+..+....+....+.    .....++.|.+|.+++.
T Consensus         1 P~~P~~~P~~v~~~~~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~~~~~~~~----~~~~~~~~i~~L~p~t~   76 (105)
T d1cfba2           1 PDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIF----DWRQNNIVIADQPTFVK   76 (105)
T ss_dssp             CCCCSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEEC----CTTCCEEEECSCCSSCE
T ss_pred             CCCCCCCCcCeEEEEccCCeEEEEEeCCChhhcCceEEEEEEEeeeeccccceeEEEec----CCCccEEEECCCCCCCE
Confidence            35787889999999999999999999876655588999999999988766655444332    45677999999999999


Q ss_pred             EEEEEEEEeCCCCCCCCcce-eeeccC
Q psy3718         325 YSVVVQALNKLGPGPMSEEV-KQYTAE  350 (543)
Q Consensus       325 Y~~~V~a~n~~G~s~~s~~~-~~~t~~  350 (543)
                      |+|+|+|+|..|.|+++... ...|.+
T Consensus        77 Y~~~V~A~N~~G~gp~S~~~v~~~t~E  103 (105)
T d1cfba2          77 YLIKVVAINDRGESNVAAEEVVGYSGE  103 (105)
T ss_dssp             EEEEEEEEETTEECSSCCCCEEEESSS
T ss_pred             EEEEEEEEeCCcCCCCCCCcEeEcCCC
Confidence            99999999999999887654 345544

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7.9e-14  Score=109.26  Aligned_cols=113  Identities=25%  Similarity=0.397  Sum_probs=92.1

Q ss_pred             CCCCCCCc-cEEEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccC
Q psy3718         230 IGSSEPSD-TVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEE  308 (543)
Q Consensus       230 ~G~~~~s~-~~~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~  308 (543)
                      .|.|.++. .+.+.|..++| ++|.++.+...+.+++.|.|.+|...  ++.+.+|.|+|+..+....+......    .
T Consensus         2 ~G~G~pss~~v~~~T~~~~P-~~P~~~~~~~~~~~sv~v~W~~P~~~--~g~i~~Y~i~y~~~~~~~~~~~~~~~----~   74 (117)
T d1wfoa1           2 IGDGSPSHPPILERTLDDVP-GPPMGILFPEVRTTSVRLIWQPPAAP--NGIILAYQITHRLNTTTANTATVEVL----A   74 (117)
T ss_dssp             CCCCCCCCCCSCCCCSCCCC-CCCCCCEEEEECSSEEEEECCCCSCC--CSCCCEEEEEEEESSCCCSCCCEEEE----C
T ss_pred             ccCCCCCCCCEEEECCCCCC-cCCCCcEEEEecCCEEEEEEECCCCC--CCceEEEeeeeeeccCCCceEeEEec----C
Confidence            56776654 56777887777 58999999999999999999988765  77899999999987765544333221    4


Q ss_pred             CceeEEEECCCCCCCEEEEEEEEEeCCCCCCCCcceeeecc
Q psy3718         309 GKEHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTA  349 (543)
Q Consensus       309 ~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t~  349 (543)
                      .....+.+.+|.|++.|.|+|+|+|..|.|++++.+.++|.
T Consensus        75 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~tT~  115 (117)
T d1wfoa1          75 PSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTE  115 (117)
T ss_dssp             TTCCEEEEESCCSSSEEEEEEEEECSSCEEEEEEEEEECCS
T ss_pred             CceEEEEECCCCCCCEEEEEEEEECCCcCCCCcCCEEEECC
Confidence            56789999999999999999999999999999888877764

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.50  E-value=1.4e-14  Score=107.58  Aligned_cols=80  Identities=19%  Similarity=0.292  Sum_probs=64.8

Q ss_pred             eCCCeEEee-cceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          49 SAPPEFEIK-LRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        49 ~~~p~~~~~-~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      +.+|.|... |.++.+.+|++++|.|.+.|.|.|.+.|+|++.....    ++..     .+   +.|.|.+++.+|+|.
T Consensus         2 ~~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~----~~~~-----~~---~~L~I~~v~~~D~G~   69 (91)
T d1cs6a3           2 QYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS----KWLS-----SE---PLLHIQNVDFEDEGT   69 (91)
T ss_dssp             CEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC----CCSB-----SS---SEEEECSCCGGGCEE
T ss_pred             ccCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccce----Eeee-----ee---eEEEeCCCCccCCEE
Confidence            357787765 7899999999999999999999999999997755421    1111     11   379999999999999


Q ss_pred             EEEEEecccceee
Q psy3718         128 FTCEIKSQKISSQ  140 (543)
Q Consensus       128 Y~C~a~n~~~sv~  140 (543)
                      |+|.|.|..|+..
T Consensus        70 Y~C~a~N~~G~~~   82 (91)
T d1cs6a3          70 YECEAENIKGRDT   82 (91)
T ss_dssp             EEEEEEETTEEEE
T ss_pred             EEEEEEECCCEEE
Confidence            9999999988753

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.8e-14  Score=105.63  Aligned_cols=80  Identities=26%  Similarity=0.416  Sum_probs=66.9

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEe
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIK  133 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  133 (543)
                      |+.+++++.+.+|+++.|.|.+. .|.+.+.|+|++.++......++.+..    ++..+.|.|.++..+|+|.|+|.|.
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~   77 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRV----EGKKHILIIEGATKADAAEYSVMTT   77 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEE----ETTEEEEEEEEECTTTCSEEEEEET
T ss_pred             EEcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEE----eCCccEEEECccccccCEEEEEEEe
Confidence            45578899999999999999995 688899999999999776666666543    3456789999999999999999999


Q ss_pred             cccce
Q psy3718         134 SQKIS  138 (543)
Q Consensus       134 n~~~s  138 (543)
                      |..++
T Consensus        78 n~~~~   82 (90)
T d1x44a1          78 GGQSS   82 (90)
T ss_dssp             TEEEE
T ss_pred             cceEE
Confidence            96443

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.48  E-value=1.4e-14  Score=109.09  Aligned_cols=88  Identities=19%  Similarity=0.300  Sum_probs=65.9

Q ss_pred             CeEEeec----ceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCc-eEEeeeecCCCceeeEEEEeeecCCCc
Q psy3718          52 PEFEIKL----RNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNR-YTIREEILPNGVLSDLSIKRTERGDSA  126 (543)
Q Consensus        52 p~~~~~~----~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G  126 (543)
                      |.|+.++    ....+.+|+++.|.|.+.|.|.|++.|+|||.++....... +...      ...+.|.|.+++.+|+|
T Consensus         2 P~~~~p~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~------~~~~~L~I~~v~~~D~G   75 (97)
T d3dara1           2 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR------NQHWSLIMESVVPSDKG   75 (97)
T ss_dssp             EEESCSTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEE------GGGTEEEECSCCGGGCE
T ss_pred             CccccccccccccEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEc------CCcEEEEECCCCcccCE
Confidence            5555432    23578899999999999999999999999999986433221 1111      12257999999999999


Q ss_pred             cEEEEEecccceeeeeeeec
Q psy3718         127 LFTCEIKSQKISSQQMTYEA  146 (543)
Q Consensus       127 ~Y~C~a~n~~~sv~~~~~~v  146 (543)
                      .|+|.|.|..|.+. ....|
T Consensus        76 ~Y~C~a~N~~G~~~-~~~~l   94 (97)
T d3dara1          76 NYTCVVENEYGSIN-HTYHL   94 (97)
T ss_dssp             EEEEEEEETTEEEE-EEEEE
T ss_pred             EEEEEEEECCCEEE-EEEEE
Confidence            99999999988853 33444

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1e-14  Score=114.18  Aligned_cols=101  Identities=23%  Similarity=0.407  Sum_probs=82.8

Q ss_pred             EEEeCCCeEEeecceeEeecCCCeEEEEEeecc-CCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC
Q psy3718          46 LLSSAPPEFEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD  124 (543)
Q Consensus        46 l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D  124 (543)
                      |+|..||.|. .+..+.+.+|+++.|.|.+.|. |.+.+.|++++..+......++.+......++..+.|.|.++..+|
T Consensus         2 L~V~~Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D   80 (115)
T d2crya1           2 LTVNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRAD   80 (115)
T ss_dssp             CCCCSSCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHH
T ss_pred             eEEecCCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhc
Confidence            6788999885 5677889999999999999996 4568999999999977666777777666667777889999999999


Q ss_pred             -CccEEEEEecccceeeeeeeeccc
Q psy3718         125 -SALFTCEIKSQKISSQQMTYEASG  148 (543)
Q Consensus       125 -~G~Y~C~a~n~~~sv~~~~~~v~~  148 (543)
                       +|.|+|.|.|..|+. ...+.|.+
T Consensus        81 ~~G~Y~C~A~N~~G~~-~~~~~L~V  104 (115)
T d2crya1          81 FQTIYNCTAWNSFGSD-TEIIRLKE  104 (115)
T ss_dssp             HHSCEEEEEECSSCEE-EEEECCCC
T ss_pred             CCeEEEEEEEECCCeE-EEEEEEEE
Confidence             799999999999985 34444433

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.8e-13  Score=105.73  Aligned_cols=89  Identities=12%  Similarity=0.183  Sum_probs=69.7

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeeccC---CceEEEccCCeecC-CCCCCceEEeeee--cCCCceeeEEEEeeecCC
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEK---PIGILWNMNNKRLD-PKSDNRYTIREEI--LPNGVLSDLSIKRTERGD  124 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p---~~~i~W~~~~~~i~-~~~~~~~~~~~~~--~~~~~~~~L~i~~~~~~D  124 (543)
                      .|.|+..|.++.+..|++++|.|.+.|.|   .|+|.|+|++.... .....++......  ......+.|.|.+++.+|
T Consensus         4 ~~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (110)
T d2avga1           4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (110)
T ss_dssp             TCSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTC
T ss_pred             CCEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHH
Confidence            35788899999999999999999999998   58899999886543 3333444443321  223345689999999999


Q ss_pred             CccEEEEEeccccee
Q psy3718         125 SALFTCEIKSQKISS  139 (543)
Q Consensus       125 ~G~Y~C~a~n~~~sv  139 (543)
                      +|.|+|.|+|..|..
T Consensus        84 ~G~Y~C~a~N~~G~~   98 (110)
T d2avga1          84 TGGYRCEVSTKDKFD   98 (110)
T ss_dssp             CEEEEEEEEETTEEE
T ss_pred             CcEEEEEEEECCCeE
Confidence            999999999998874

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5.3e-14  Score=107.05  Aligned_cols=87  Identities=22%  Similarity=0.387  Sum_probs=69.2

Q ss_pred             CCCeEEeecceeEeecCCCeEEEEEeeccCCc-eEEEccCCeec----CCCCCCceEEeeeecCCCceeeEEEEeee-cC
Q psy3718          50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPI-GILWNMNNKRL----DPKSDNRYTIREEILPNGVLSDLSIKRTE-RG  123 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~  123 (543)
                      .||.|...+.+..+.+|+.+.|.|.+.|.|.| .+.|+|++...    ......++.+..    .+..+.|.|.++. .+
T Consensus         1 GPP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~v~~~~   76 (101)
T d3b5ha1           1 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS----SQGRSELHIENLNMEA   76 (101)
T ss_dssp             CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEE----ETTEEEEEECSCCTTT
T ss_pred             CCceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEe----CCCEEEEEEecccccc
Confidence            48999999999999999999999999999987 79999876432    222334555442    3445789999998 57


Q ss_pred             CCccEEEEEecccceee
Q psy3718         124 DSALFTCEIKSQKISSQ  140 (543)
Q Consensus       124 D~G~Y~C~a~n~~~sv~  140 (543)
                      |+|.|+|.|.|..|+..
T Consensus        77 D~G~Y~C~A~N~~G~~~   93 (101)
T d3b5ha1          77 DPGQYRCNGTSSKGSDQ   93 (101)
T ss_dssp             SSEEEEEEEEETTEEEE
T ss_pred             CCEEEEEEEEECCCEEE
Confidence            99999999999988854

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.46  E-value=7.8e-14  Score=107.89  Aligned_cols=92  Identities=14%  Similarity=0.129  Sum_probs=66.2

Q ss_pred             eCCCeEEee-cceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCC----CCCceEEe---eeecCCCceeeEEEEee
Q psy3718          49 SAPPEFEIK-LRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPK----SDNRYTIR---EEILPNGVLSDLSIKRT  120 (543)
Q Consensus        49 ~~~p~~~~~-~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~----~~~~~~~~---~~~~~~~~~~~L~i~~~  120 (543)
                      +.+|.|... |+++.+.+|+++.|.|.+.|.|.|+|.|+|++......    ........   .........+.|.|.++
T Consensus         2 ~~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~   81 (109)
T d2fdbp2           2 RHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNV   81 (109)
T ss_dssp             CSCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSC
T ss_pred             CCCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCC
Confidence            357888775 78999999999999999999999999999976543211    11111111   11112334568999999


Q ss_pred             ecCCCccEEEEEecccceee
Q psy3718         121 ERGDSALFTCEIKSQKISSQ  140 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n~~~sv~  140 (543)
                      ..+|+|.|+|.|.|..|...
T Consensus        82 ~~~D~G~Y~C~a~N~~G~~~  101 (109)
T d2fdbp2          82 TFEDAGEYTCLAGNSIGISF  101 (109)
T ss_dssp             CGGGCEEEEEEEECSSCEEE
T ss_pred             CHHHCeEEEEEEEECCCEEE
Confidence            99999999999999988753

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6.5e-13  Score=103.01  Aligned_cols=104  Identities=31%  Similarity=0.473  Sum_probs=83.2

Q ss_pred             eccCCCCCCCCeeeEEEec--CCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCC
Q psy3718         242 LTAEEAPSGPPTHIKVEAT--DQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSL  319 (543)
Q Consensus       242 ~t~~~~p~~~P~~~~~~~~--~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L  319 (543)
                      .|...+|..+|.++.+...  +.+++.|+|.+|...  ++.+.+|.+.|+.........+.....   ......+.|.+|
T Consensus         5 ~T~~~~P~~pP~~~~v~~~~~~~~sv~v~W~~P~~~--~g~i~~Y~i~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~L   79 (111)
T d1x5ka1           5 TTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEA--NGKITGYIIYYSTDVNAEIHDWVIEPV---VGNRLTHQIQEL   79 (111)
T ss_dssp             CSCCCCCCSCCEEEEEEECSSCTTCEEEEEECCSCC--SSCCCEEEEEEESCSSSCTTTSEEEEE---STTCSEEEECSC
T ss_pred             EeCCCCCCCCCCCcEEEEecCCCCEEEEEEEccccC--CCceeeeEEeeeecCCCCcceeEEEEe---CCCeeEEEECCC
Confidence            3556788889999987754  677999999998765  789999999998766544332222211   456778999999


Q ss_pred             CCCCEEEEEEEEEeCCCCCCCCcceeeeccC
Q psy3718         320 KTYTQYSVVVQALNKLGPGPMSEEVKQYTAE  350 (543)
Q Consensus       320 ~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t~~  350 (543)
                      .|++.|.|+|+|+|..|.|++|+.+.++|.+
T Consensus        80 ~p~t~Y~~~V~A~n~~G~g~~S~~v~~~T~~  110 (111)
T d1x5ka1          80 TLDTPYYFKIQARNSKGMGPMSEAVQFRTPK  110 (111)
T ss_dssp             CSSSEEEEEEEEECSSCBCCCCCCEEEECCC
T ss_pred             CCCCEEEEEEEEEcCCCCcCCCCCEEEECCC
Confidence            9999999999999999999999999998854

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.6e-13  Score=104.91  Aligned_cols=99  Identities=13%  Similarity=0.062  Sum_probs=70.5

Q ss_pred             EeCCCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        48 v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      |..||+|+...+.   ..+....|.|.+.|.|.|++.|+|||.+|.....  +.+..........+.|.|.+++.+|+|.
T Consensus         2 V~~PP~i~~~~~~---~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~D~G~   76 (105)
T d1wwca_           2 VYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKI--IHVEYYQEGEISEGCLLFNKPTHYNNGN   76 (105)
T ss_dssp             CCCCCCCCCCCCC---CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSS--EEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred             EEcCCeeEEeCCC---EEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcc--eeeeEEeecccceEEEEEeecccccceE
Confidence            5678887543221   2344556888999999999999999999975433  3333222234455689999999999999


Q ss_pred             EEEEEecccceeeeeeeeccccccc
Q psy3718         128 FTCEIKSQKISSQQMTYEASGLKKK  152 (543)
Q Consensus       128 Y~C~a~n~~~sv~~~~~~v~~l~~~  152 (543)
                      |+|.|+|..|+. +..+.+.++.+.
T Consensus        77 Y~C~a~N~~G~~-~~~~~v~V~~~P  100 (105)
T d1wwca_          77 YTLIAKNPLGTA-NQTINGHFLKEP  100 (105)
T ss_dssp             EEEEEEETTEEE-EEEEEECCSCCC
T ss_pred             EEEEEEcCCCEE-EEEEEEEEEeCC
Confidence            999999998885 444556555443

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=2.2e-13  Score=102.59  Aligned_cols=90  Identities=27%  Similarity=0.408  Sum_probs=72.8

Q ss_pred             CCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEE
Q psy3718         248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSV  327 (543)
Q Consensus       248 p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~  327 (543)
                      |+.+|.++.+...+.+++.|+|.+|.... +.++.+|.|+|+..+...+..   .  .........+++.+|.+++.|.|
T Consensus         1 PP~~P~~~~v~~~~~~sv~l~W~pP~~~~-~~~i~~Y~V~~~~~~~~~~~~---~--~~~~~~~~~~~v~~L~~~~~Y~f   74 (98)
T d1x5ya1           1 PTSAPQHLTVEDVTDTTTTLKWRPPDRIG-AGGIDGYLVEYCLEGSEEWVP---A--NKEPVERCGFTVKDLPTGARILF   74 (98)
T ss_dssp             CCCCCEEEEEEEECSSEEEEEEECCSCCC-SSCCCEEEEEEEETTCCCCEE---S--SSSCBSSSEEEEECCCTTCCEEE
T ss_pred             CCCCCcCcEEEEccCCEEEEEEECCCcCC-CCCceEEEEEEEecCcceeEE---e--eeecCceeEEEECCCcCCeEEEE
Confidence            56789999999999999999999886543 567999999999887654321   1  11244667899999999999999


Q ss_pred             EEEEEeCCCCCCCCcc
Q psy3718         328 VVQALNKLGPGPMSEE  343 (543)
Q Consensus       328 ~V~a~n~~G~s~~s~~  343 (543)
                      +|+|+|..|.|+++..
T Consensus        75 rV~A~n~~G~s~~s~~   90 (98)
T d1x5ya1          75 RVVGVNIAGRSEPATL   90 (98)
T ss_dssp             EEEEEETTEECCCCCC
T ss_pred             EEEEECCCcCCCCcCC
Confidence            9999999999876653

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.1e-14  Score=106.08  Aligned_cols=83  Identities=12%  Similarity=0.198  Sum_probs=69.0

Q ss_pred             CCCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCc-cE
Q psy3718          50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSA-LF  128 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y  128 (543)
                      ..|.|...+.+..+.+|+++.|.|.+.|.|.|++.|++++.++..... .       ........|.|.++..+|.| .|
T Consensus         1 G~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~-~-------~~~~~~~~L~i~~~~~~d~G~~Y   72 (92)
T d2ifga1           1 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM-K-------SGGLPSLGLTLANVTSDLNRKNV   72 (92)
T ss_dssp             CCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC-C-------CCCSSEEEEEEESCCSTTTTCCE
T ss_pred             CCCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeee-e-------eeeccceeEEEccccccccceEE
Confidence            369999999999999999999999999999999999999987742111 1       12334468999999999999 69


Q ss_pred             EEEEecccceee
Q psy3718         129 TCEIKSQKISSQ  140 (543)
Q Consensus       129 ~C~a~n~~~sv~  140 (543)
                      +|.|.|..|+.+
T Consensus        73 ~C~a~N~~G~~~   84 (92)
T d2ifga1          73 TCWAENDVGRAE   84 (92)
T ss_dssp             EECCEETTEECC
T ss_pred             EEEEEcCCCEEE
Confidence            999999988853

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.8e-13  Score=107.16  Aligned_cols=108  Identities=17%  Similarity=0.297  Sum_probs=72.4

Q ss_pred             CCCCCCC-cceeeeccCCCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEE
Q psy3718         335 LGPGPMS-EEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRA  413 (543)
Q Consensus       335 ~G~s~~s-~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l  413 (543)
                      .|.|+++ ..+.++|.+++|. +|.++.+...+.+++.|.|.+|.  ..+|                             
T Consensus         2 ~G~G~pss~~v~~~T~~~~P~-~P~~~~~~~~~~~sv~v~W~~P~--~~~g-----------------------------   49 (117)
T d1wfoa1           2 IGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQPPA--APNG-----------------------------   49 (117)
T ss_dssp             CCCCCCCCCCSCCCCSCCCCC-CCCCCEEEEECSSEEEEECCCCS--CCCS-----------------------------
T ss_pred             ccCCCCCCCCEEEECCCCCCc-CCCCcEEEEecCCEEEEEEECCC--CCCC-----------------------------
Confidence            5777665 4577888888886 88999999999999999999772  2344                             


Q ss_pred             EeeCCCCCCCCcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccc
Q psy3718         414 SWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRH  492 (543)
Q Consensus       414 ~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~  492 (543)
                                  .|.+|.|.|+..+.. .......  ........+.+.+|+|+ .|.|+|+|              .|.
T Consensus        50 ------------~i~~Y~i~y~~~~~~-~~~~~~~--~~~~~~~~~~i~~L~p~t~Y~~~V~A--------------~n~  100 (117)
T d1wfoa1          50 ------------IILAYQITHRLNTTT-ANTATVE--VLAPSARQYTATGLKPESVYLFRITA--------------QTR  100 (117)
T ss_dssp             ------------CCCEEEEEEEESSCC-CSCCCEE--EECTTCCEEEEESCCSSSEEEEEEEE--------------ECS
T ss_pred             ------------ceEEEeeeeeeccCC-CceEeEE--ecCCceEEEEECCCCCCCEEEEEEEE--------------ECC
Confidence                        445555554444332 1111110  00022334555699999 99999999              999


Q ss_pred             cccCCCccccc
Q psy3718         493 RGESDKCKNDR  503 (543)
Q Consensus       493 ~G~g~~~~~~~  503 (543)
                      +|.|+++....
T Consensus       101 ~G~g~~S~~~~  111 (117)
T d1wfoa1         101 KGWGEAAEALV  111 (117)
T ss_dssp             SCEEEEEEEEE
T ss_pred             CcCCCCcCCEE
Confidence            99998765443

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6.9e-13  Score=101.05  Aligned_cols=92  Identities=37%  Similarity=0.580  Sum_probs=77.4

Q ss_pred             CCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEE
Q psy3718         249 SGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVV  328 (543)
Q Consensus       249 ~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~  328 (543)
                      |++|.++++...+++++.|+|.+|...  ++.+.+|.|.|+..+......   +     .....++.|.+|.|++.|.|+
T Consensus        11 P~~P~~l~v~~~s~~si~l~W~~P~~~--~g~i~~Y~v~~~~~~~~~~~~---~-----~~~~~~~~i~~L~p~t~Y~~~   80 (103)
T d1x5ga1          11 PGPAPNLRAYAASPTSITVTWETPVSG--NGEIQNYKLYYMEKGTDKEQD---V-----DVSSHSYTINGLKKYTEYSFR   80 (103)
T ss_dssp             CCCCSSCEEEEEETTEEEEECCCCSCC--SSCCSEEEEEEEETTCCCCCC---E-----EECSSEEEECSCCTTCEEEEE
T ss_pred             cccCCCcEEEEccCCEEEEEEECCcCC--CccEEEEEEEEEeCCCceeEE---E-----eccccEEecCCCCCCCEEEEE
Confidence            357889999999999999999988765  788999999999876654321   1     124568999999999999999


Q ss_pred             EEEEeCCCCCCCCcceeeeccC
Q psy3718         329 VQALNKLGPGPMSEEVKQYTAE  350 (543)
Q Consensus       329 V~a~n~~G~s~~s~~~~~~t~~  350 (543)
                      |+|+|..|.|++|..+.++|.+
T Consensus        81 V~A~n~~G~g~~S~~v~v~T~e  102 (103)
T d1x5ga1          81 VVAYNKHGPGVSTPDVAVRTLS  102 (103)
T ss_dssp             EEEECSSCCCCBCCCCCEECCC
T ss_pred             EEEEcCCcCcCCCCCEEEEcCC
Confidence            9999999999999999888865

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.1e-12  Score=97.70  Aligned_cols=90  Identities=27%  Similarity=0.442  Sum_probs=76.0

Q ss_pred             CCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEE
Q psy3718         250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVV  329 (543)
Q Consensus       250 ~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V  329 (543)
                      ++|.++++...++++|.|.|++|     ++.+.+|.|.|+........... .     ......+.+.+|.|++.|.|+|
T Consensus         3 ~aP~n~~~~~~s~~si~l~W~~p-----~~~~~~Y~i~y~~~~~~~~~~~~-~-----~~~~~~~~i~~L~p~t~Y~~~V   71 (92)
T d1qg3a1           3 GAPQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSESEAHL-L-----DSKVPSVELTNLYPYCDYEMKV   71 (92)
T ss_dssp             CCCEEEEEEECSTTCEEEEEECC-----SSCCCEEEEEEEETTSCGGGCEE-E-----EESSSEEEECSCCTTCEEEEEE
T ss_pred             CcCCCCEEEEccCCEEEEEEEec-----CCCccceEEeeeeccccccEEEE-e-----cCCccEEEECCCCCCcEEEEEE
Confidence            58899999999999999999998     45678999999987765443222 2     2356789999999999999999


Q ss_pred             EEEeCCCCCCCCcceeeeccC
Q psy3718         330 QALNKLGPGPMSEEVKQYTAE  350 (543)
Q Consensus       330 ~a~n~~G~s~~s~~~~~~t~~  350 (543)
                      +|+|..|.|++|+.+.++|.+
T Consensus        72 ~A~n~~G~g~~S~~~~~~T~e   92 (92)
T d1qg3a1          72 CAYGAQGEGPYSSLVSCRTHQ   92 (92)
T ss_dssp             EEECSSCBCCCCCCEEEECCC
T ss_pred             EEEeCCcCcCCCCCEEEEcCC
Confidence            999999999999999998853

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.5e-13  Score=103.37  Aligned_cols=99  Identities=24%  Similarity=0.432  Sum_probs=80.5

Q ss_pred             EEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCC
Q psy3718         240 TILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSL  319 (543)
Q Consensus       240 ~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L  319 (543)
                      .+.+..++| ++|.++++...+.+++.|+|.++.    ++.+.+|.|+|+..+..... ....      ....++.|.+|
T Consensus         3 ~v~T~~~vP-~~P~~~~~~~~~~~si~l~W~~p~----~~~i~~Y~i~y~~~~~~~~~-~~~~------~~~~~~~i~~L   70 (102)
T d1x5za1           3 QVITQTGVP-GQPLNFKAEPESETSILLSWTPPR----SDTIANYELVYKDGEHGEEQ-RITI------EPGTSYRLQGL   70 (102)
T ss_dssp             CCCCCSCCC-CCCEEEEEECSSSSEEEEEEECCS----CCCCCEEEECBEESSSCCCB-CCEE------CSSSEEEEECC
T ss_pred             EEECCCCCC-cCCCCeEEEEccCCEEEEEEECCC----CCCccceEEEEEeCCCCceE-EEEc------CCcCEEEECCC
Confidence            455667777 589999999999999999999985    45789999999886654322 1111      24468999999


Q ss_pred             CCCCEEEEEEEEEeCCCCCCCCcceeeeccC
Q psy3718         320 KTYTQYSVVVQALNKLGPGPMSEEVKQYTAE  350 (543)
Q Consensus       320 ~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t~~  350 (543)
                      +|++.|.|+|+|+|..|.|+++..+.++|.+
T Consensus        71 ~p~t~Y~~~V~A~n~~G~g~~S~~v~~~T~e  101 (102)
T d1x5za1          71 KPNSLYYFRLAARSPQGLGASTAEISARTMQ  101 (102)
T ss_dssp             CTTCEEEECEEEECSSCEEEECCCEEEECCC
T ss_pred             CCCCEEEEEEEEEcCCCEeCCCCCEEEEcCC
Confidence            9999999999999999999999999998865

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.43  E-value=6.2e-13  Score=99.68  Aligned_cols=90  Identities=20%  Similarity=0.435  Sum_probs=74.2

Q ss_pred             CCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEE
Q psy3718         247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYS  326 (543)
Q Consensus       247 ~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  326 (543)
                      .|..+|.++++...+++++.|.|.+|.... ++.+.+|.|.|+..+....+....+.    .....++.|.+|+|++.|+
T Consensus         5 ~P~~~P~~~~v~~~s~tsv~l~W~~P~~~~-~~~i~gY~i~y~~~~~~~~~~~~~~~----~~~~~~~~i~~L~p~t~Y~   79 (95)
T d2ibga1           5 DPMPVPELLEIEEYSETAVVLHWSLASDAD-EHLITGYYAYYRPSSSAGEYFKATIE----GAHARSFKIAPLETATMYE   79 (95)
T ss_dssp             CCCCCCEECCCBCCSSSCEEEEEECCTTCC-GGGCCEEEEEEEETTCCSCCEEEEEE----CTTCCEEEECSCCTTCEEE
T ss_pred             CCCCCCcCeEEEEeCCCEEEEEEEeeeecc-CCcccccceeEeeeeecceeeeeecc----CCceeEEEEeeccCCeEEE
Confidence            455678999999999999999999876543 67899999999987766555444332    4567899999999999999


Q ss_pred             EEEEEEeCCCCCCCC
Q psy3718         327 VVVQALNKLGPGPMS  341 (543)
Q Consensus       327 ~~V~a~n~~G~s~~s  341 (543)
                      |+|+|+|..|.|++|
T Consensus        80 ~~V~A~n~~G~s~~S   94 (95)
T d2ibga1          80 FKLQSFSAASASEFS   94 (95)
T ss_dssp             EEEEEECSSCBCCCC
T ss_pred             EEEEEEeCCccCCCC
Confidence            999999999999876

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=6.8e-13  Score=100.79  Aligned_cols=99  Identities=23%  Similarity=0.347  Sum_probs=82.0

Q ss_pred             CCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEE
Q psy3718         248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSV  327 (543)
Q Consensus       248 p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~  327 (543)
                      |..+|.++.+..++++++.|+|..+.....++.+.+|.|.|+..+......+.....   .....++.|.+|+|++.|.|
T Consensus         1 P~~~P~~~~~~~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~---~~~~~~~~i~~L~p~t~Y~~   77 (101)
T d1x4ya1           1 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMV---EGDRYWHSISHLQPETSYDI   77 (101)
T ss_dssp             CCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEE---ETTCCEEEECSCCTTCEEEE
T ss_pred             CCCCCcccEEEEEcCCEEEEEEecCcccccccceEEEEEEeeeccceeeeeeeEEEE---cCCeeEEEEcCCCCCCEEEE
Confidence            457899999999999999999998766655889999999999876554433232221   34667899999999999999


Q ss_pred             EEEEEeCCCCCCCCcceeeecc
Q psy3718         328 VVQALNKLGPGPMSEEVKQYTA  349 (543)
Q Consensus       328 ~V~a~n~~G~s~~s~~~~~~t~  349 (543)
                      +|+|+|..|.|++|+.+.++|.
T Consensus        78 ~v~a~n~~G~s~~S~~~~~~T~   99 (101)
T d1x4ya1          78 KMQCFNEGGESEFSNVMICETK   99 (101)
T ss_dssp             EEEEECTTCCCCCCCCEEEECC
T ss_pred             EEEEEcCCCCCCCCCcEEEEcc
Confidence            9999999999999999999885

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.7e-13  Score=102.18  Aligned_cols=99  Identities=11%  Similarity=0.043  Sum_probs=71.5

Q ss_pred             EeCCCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        48 v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      |..||.|+...   ....++...|.|.+.|.|.|++.|+|||.+|.......+.+... ......+.|.|.+++.+|+|.
T Consensus         1 v~~pP~it~~~---~~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~   76 (103)
T d1wwbx_           1 VHFAPTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVT-NHTEYHGCLQLDNPTHMNNGD   76 (103)
T ss_dssp             CCCCCCCCCCC---CCCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEE-CSSEEEEEEEEESCCGGGCEE
T ss_pred             CccCCeeEEcC---CCccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeeccc-ccccceEEEEECCCCHHhCce
Confidence            35678775422   22467788899999999999999999999997443333333211 122345689999999999999


Q ss_pred             EEEEEecccceeeeeeeecccccc
Q psy3718         128 FTCEIKSQKISSQQMTYEASGLKK  151 (543)
Q Consensus       128 Y~C~a~n~~~sv~~~~~~v~~l~~  151 (543)
                      |+|.|+|..|++ ...+.|.++..
T Consensus        77 Y~C~a~N~~G~~-~~~~~v~V~~~   99 (103)
T d1wwbx_          77 YTLIAKNEYGKD-EKQISAHFMGW   99 (103)
T ss_dssp             EEEEEECSSCEE-EEEEEECCSCC
T ss_pred             EEEEEeccCCEE-EEEEEEEEEeC
Confidence            999999999986 45555555443

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-14  Score=105.41  Aligned_cols=79  Identities=14%  Similarity=0.060  Sum_probs=62.5

Q ss_pred             CCeEEe--ecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccE
Q psy3718          51 PPEFEI--KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALF  128 (543)
Q Consensus        51 ~p~~~~--~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y  128 (543)
                      +|+|..  .|.++.+.+|+++.|.|.+.|.|.|++.|+|++..+...                   +.+.+++.+|+|.|
T Consensus         2 ~P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~-------------------~~~~~v~~~d~G~Y   62 (84)
T d2oz4a3           2 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI-------------------GESVTVTRDLEGTY   62 (84)
T ss_dssp             EEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT-------------------TSCEECCGGGCEEE
T ss_pred             CCceeecCCCccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee-------------------eeeeccccCCCCEE
Confidence            466643  367899999999999999999999999999999876421                   33456788999999


Q ss_pred             EEEEecccceeeeeeeecccc
Q psy3718         129 TCEIKSQKISSQQMTYEASGL  149 (543)
Q Consensus       129 ~C~a~n~~~sv~~~~~~v~~l  149 (543)
                      +|.|+|..|++. ..+.|.++
T Consensus        63 ~C~A~N~~G~~~-~~~~l~V~   82 (84)
T d2oz4a3          63 LCRARSTQGEVT-REVTVNVL   82 (84)
T ss_dssp             EEEEEETTEEEE-EEEEEEEE
T ss_pred             EEEEEcCCCEEE-EEEEEEEE
Confidence            999999998853 34545444

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=9.5e-13  Score=100.90  Aligned_cols=97  Identities=24%  Similarity=0.311  Sum_probs=80.6

Q ss_pred             CCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEE
Q psy3718         248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSV  327 (543)
Q Consensus       248 p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~  327 (543)
                      .|.+|.++.+..++.+++.|+|.+|.... ++.+.+|.|.|+..+...+......     .....++.+.+|.|++.|.|
T Consensus        10 ~P~~P~~l~~~~~~~~sv~lsW~~P~~~~-~~~i~~Y~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~L~p~t~Y~~   83 (107)
T d1x5fa1          10 LPSAPRDVVASLVSTRFIKLTWRTPASDP-HGDNLTYSVFYTKEGIARERVENTS-----HPGEMQVTIQNLMPATVYIF   83 (107)
T ss_dssp             CCCCCEEEEEEEECSSCEEEEEECCSSCS-SCCSSEEEEEEEETTCCCCEEEECS-----STTCSEEEECSCCTTCEEEE
T ss_pred             CCcCCCccEEEEecCCEEEEEEECCccCC-CCceEEEEEEEEeCCCCceEEEEEe-----CCCccEEEecCCCCCCEEEE
Confidence            34689999999999999999999976543 6789999999998776554333222     45678999999999999999


Q ss_pred             EEEEEeCCCCCCCCcceeeeccC
Q psy3718         328 VVQALNKLGPGPMSEEVKQYTAE  350 (543)
Q Consensus       328 ~V~a~n~~G~s~~s~~~~~~t~~  350 (543)
                      +|+|+|..|.|++|..+.++|.+
T Consensus        84 rV~A~n~~G~g~~S~~i~v~T~~  106 (107)
T d1x5fa1          84 RVMAQNKHGSGESSAPLRVETQP  106 (107)
T ss_dssp             EEEEECSSCEEEECCCEEEECCC
T ss_pred             EEEEEeCCCCcCCCCCEEEECCC
Confidence            99999999999999999998753

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=9.5e-14  Score=111.38  Aligned_cols=96  Identities=14%  Similarity=0.249  Sum_probs=72.0

Q ss_pred             eCCCeEEe-----ecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCC--------------------------
Q psy3718          49 SAPPEFEI-----KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSD--------------------------   97 (543)
Q Consensus        49 ~~~p~~~~-----~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~--------------------------   97 (543)
                      +.||.|..     .|.++.+.+|++++|.|.+.|.|.|++.|++++..+.....                          
T Consensus         2 q~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (130)
T d1gxea_           2 QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCET   81 (130)
T ss_dssp             CBCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSC
T ss_pred             CCCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeecc
Confidence            56888743     45678999999999999999999999999998876643221                          


Q ss_pred             -CceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccceeeeeeeecccc
Q psy3718          98 -NRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKISSQQMTYEASGL  149 (543)
Q Consensus        98 -~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~sv~~~~~~v~~l  149 (543)
                       .++.+.    .....+.|.|.++..+|+|.|+|.|.|..|+. ...+.|.++
T Consensus        82 ~~r~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~  129 (130)
T d1gxea_          82 EGRVRVE----TTKDRSIFTVEGAEKEDEGVYTVTVKNPVGED-QVNLTVKVI  129 (130)
T ss_dssp             SSSCEEE----EETTEEEEECSCCCTTTCEEEEEEEECSSCEE-EEEEEEEEC
T ss_pred             CceEEEE----ECCCEEEEEECcCChhcCEEEEEEEEECCCEE-EEEEEEEEE
Confidence             112221    12345689999999999999999999999985 344545443

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=8.5e-13  Score=99.36  Aligned_cols=93  Identities=27%  Similarity=0.393  Sum_probs=77.6

Q ss_pred             CCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEE
Q psy3718         249 SGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVV  328 (543)
Q Consensus       249 ~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~  328 (543)
                      |++|..+++...+.+++.|.|.+|...  ++.+.+|+|+|+..+....... .+     .....+++|.+|.|++.|.|+
T Consensus         4 P~~p~~~~~~~~s~~si~v~W~~P~~~--~g~i~~Y~v~y~~~~~~~~~~~-~~-----~~~~~~~~i~~L~p~t~Y~~~   75 (98)
T d1x5la1           4 PSQVVVIRQERAGQTSVSLLWQEPEQP--NGIILEYEIKYYEKDKEMQSYS-TL-----KAVTTRATVSGLKPGTRYVFQ   75 (98)
T ss_dssp             CCCCCCEECSCBCSSCEEEEECCCSCC--CSCCCEEEEEEEESSSCCSSCE-EE-----EESSSEEEECSCCTTCEEEEC
T ss_pred             CCCCCceEEEeccCCEEEEEEECCCCC--CCCEEEEEEEeecccccceeeE-Ee-----cCCceEEEECCCCCCCEEEEE
Confidence            357889999999999999999988765  6789999999998765433322 22     235679999999999999999


Q ss_pred             EEEEeCCCCCCCCcceeeecc
Q psy3718         329 VQALNKLGPGPMSEEVKQYTA  349 (543)
Q Consensus       329 V~a~n~~G~s~~s~~~~~~t~  349 (543)
                      |+|+|..|.|++|..+.++|.
T Consensus        76 V~a~n~~G~g~~S~~v~~~T~   96 (98)
T d1x5la1          76 VRARTSAGCGRFSQAMEVETG   96 (98)
T ss_dssp             EEEEETTEECCCCCCEEEECC
T ss_pred             EEEEcCCCCcCCCCCEEEEcC
Confidence            999999999999999999885

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.5e-13  Score=103.37  Aligned_cols=98  Identities=24%  Similarity=0.475  Sum_probs=79.7

Q ss_pred             EEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCC
Q psy3718         240 TILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSL  319 (543)
Q Consensus       240 ~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L  319 (543)
                      .++|..++|. +|.++.+...+.+++.|+|.++...  ++.+.+|.|+|+..+....+.....     .....++.|.+|
T Consensus         3 ~v~T~e~vP~-~p~~l~~~~~~~~sv~l~W~~P~~~--ng~i~~Y~i~~~~~~~~~~~~~~~~-----~~~~~~~~i~~L   74 (106)
T d1wfna1           3 LVRTHEDVPG-PVGHLSFSEILDTSLKVSWQEPGEK--NGILTGYRISWEEYNRTNTRVTHYL-----PNVTLEYRVTGL   74 (106)
T ss_dssp             SCCSSCCSCC-CCSCCEEESCCSSEEEEECCCCTTC--CSCCCEEEEEEEESSCGGGCCCEEE-----CSSCCEEEEESC
T ss_pred             EEEcCCCCCc-CCCCcEEEEecCCEEEEEEECCCCC--CCcEEeEEEEEEECCCCcceEEEec-----CCCeeEEEEccC
Confidence            4567777774 8889999999999999999988765  7889999999988775543333333     446689999999


Q ss_pred             CCCCEEEEEEEEEeCCCCCCCCccee
Q psy3718         320 KTYTQYSVVVQALNKLGPGPMSEEVK  345 (543)
Q Consensus       320 ~p~t~Y~~~V~a~n~~G~s~~s~~~~  345 (543)
                      .|++.|.|+|+|+|..|.|+.+....
T Consensus        75 ~p~t~Y~~~V~A~n~~G~g~~s~~~~  100 (106)
T d1wfna1          75 TALTTYTIEVAAMTSKGQGQVSASTI  100 (106)
T ss_dssp             CTTCEEEEEEEEECSSCEEEEEEEEE
T ss_pred             CCCCEEEEEEEEECCCCCcCCcCCEE
Confidence            99999999999999999998776443

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.1e-13  Score=107.35  Aligned_cols=112  Identities=24%  Similarity=0.415  Sum_probs=86.9

Q ss_pred             ccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCce--EEEEeeeccCCceeEEEECCCC
Q psy3718         243 TAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFL--FETVDFSKEEGKEHHLTLSSLK  320 (543)
Q Consensus       243 t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~L~  320 (543)
                      +.+++|+.+|.++.+...+.++|.|+|+++.....++.+..|.+.|+.........  ...............+.|.+|.
T Consensus         9 s~e~~P~~~P~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~   88 (125)
T d1uena_           9 SGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLE   88 (125)
T ss_dssp             SCCCCCCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEESCC
T ss_pred             ccCcCCCCCCcccEEEEecCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCccceeecccceEEEeCCCccEEEECCCC
Confidence            55678888999999999999999999999875444678899999987654322111  1111111124466789999999


Q ss_pred             CCCEEEEEEEEEeCCCCCCCCcceeeeccCCCCC
Q psy3718         321 TYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPE  354 (543)
Q Consensus       321 p~t~Y~~~V~a~n~~G~s~~s~~~~~~t~~~~p~  354 (543)
                      |++.|.|+|+|+|..|.|++|..+.++|.++.|+
T Consensus        89 p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~pp  122 (125)
T d1uena_          89 PFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSGP  122 (125)
T ss_dssp             SSCEEEEEEEEEESSCEEEECCCEEEECCCCCSS
T ss_pred             CCCEEEEEEEEEeCCcccCCCCCEEEECCCCCcC
Confidence            9999999999999999999999999999877664

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1.7e-12  Score=99.53  Aligned_cols=92  Identities=22%  Similarity=0.372  Sum_probs=74.6

Q ss_pred             CCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEE
Q psy3718         247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYS  326 (543)
Q Consensus       247 ~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  326 (543)
                      .|+.+|.++.+...+.+++.|.|.++.+.  +.++.+|.|+|+..+....+.......   ......+.+.+|.|++.|.
T Consensus         9 ~pP~~P~~~~v~~~~~~sv~l~W~p~~~~--g~~I~~Y~v~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~L~p~t~Y~   83 (108)
T d1x4za1           9 SPPEAPDRPTISTASETSVYVTWIPRGNG--GFPIQSFRVEYKKLKKVGDWILATSAI---PPSRLSVEITGLEKGISYK   83 (108)
T ss_dssp             CCCCCCCCCEEEECCSSEEEEECCCCCCT--TSCCCEEEEEEEESSSCCCCEEEEEEE---CTTCCEEEEESCCTTCEEE
T ss_pred             CCCccCCCCEEEEccCCEEEEEEECCCCC--CCccEEEEEEEEecCCCCceEEEEEee---cCCccEEEECCCCCCCEEE
Confidence            46678889999999999999999876554  678999999999877665554333222   4567889999999999999


Q ss_pred             EEEEEEeCCCCCCCCcc
Q psy3718         327 VVVQALNKLGPGPMSEE  343 (543)
Q Consensus       327 ~~V~a~n~~G~s~~s~~  343 (543)
                      |+|+|+|..|.|++|.+
T Consensus        84 frV~A~N~~G~s~~S~p  100 (108)
T d1x4za1          84 FRVRALNMLGESEPSAP  100 (108)
T ss_dssp             EEEEEEETTEECCCCCC
T ss_pred             EEEEEECCCcCCCCCCC
Confidence            99999999999877654

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.5e-13  Score=105.59  Aligned_cols=95  Identities=15%  Similarity=0.184  Sum_probs=70.2

Q ss_pred             eEEeecceeEeecCCCeEEEEEeeccC---CceEEEccCCeec-CCCCCCceEEeee--ecCCCceeeEEEEeeecCCCc
Q psy3718          53 EFEIKLRNQTSRRGEPSVLQCEAKGEK---PIGILWNMNNKRL-DPKSDNRYTIREE--ILPNGVLSDLSIKRTERGDSA  126 (543)
Q Consensus        53 ~~~~~~~~~~v~~g~~~~l~C~~~g~p---~~~i~W~~~~~~i-~~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~D~G  126 (543)
                      .|+..|+++.+.+|++++|.|.+.|.|   .|+|.|+|++... ......++.+...  .......+.|.|.+++.+|+|
T Consensus         2 ~F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   81 (113)
T d2dava1           2 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAG   81 (113)
T ss_dssp             SCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCE
T ss_pred             EEeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCe
Confidence            367789999999999999999999998   5899999987542 2223344444332  222344567999999999999


Q ss_pred             cEEEEEecccceeeeeeeeccc
Q psy3718         127 LFTCEIKSQKISSQQMTYEASG  148 (543)
Q Consensus       127 ~Y~C~a~n~~~sv~~~~~~v~~  148 (543)
                      .|+|.|.|..|... ..+.|.+
T Consensus        82 ~Y~C~a~N~~G~~~-~~~~L~V  102 (113)
T d2dava1          82 NYRCEVTYKDKFDS-CSFDLEV  102 (113)
T ss_dssp             EEEEEEECSSCEEE-ECCEEEE
T ss_pred             EEEEEEEeCCCEEE-EEEEEEE
Confidence            99999999988753 3344433

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.3e-13  Score=102.19  Aligned_cols=85  Identities=15%  Similarity=0.275  Sum_probs=62.1

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeeccCCceEEEc---cCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWN---MNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      +|.|. .+.++.+.+|+++.|.|.+.|.|.|.+.|.   +++..+.  ......+    ......+.|.|.++..+|+|.
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~L~I~~v~~~D~G~   74 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAP--LKEIKVT----SSRRFIASFNVVNTTKRDAGK   74 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCC--EEEEEEE----ETTEEEEEEEECSCCGGGCSE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeec--CCceeEE----EeecCceEEEECCCCHHHCeE
Confidence            68897 599999999999999999999997755432   2333321  1111111    123445689999999999999


Q ss_pred             EEEEEecccceeeee
Q psy3718         128 FTCEIKSQKISSQQM  142 (543)
Q Consensus       128 Y~C~a~n~~~sv~~~  142 (543)
                      |+|.|.|..|+..+.
T Consensus        75 Y~C~a~N~~G~~~s~   89 (96)
T d2c9aa1          75 YRCMIRTEGGVGISN   89 (96)
T ss_dssp             EEEEEEETTEEEEEE
T ss_pred             EEEEEEeCCCeEEEE
Confidence            999999999885433

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2e-13  Score=100.52  Aligned_cols=78  Identities=13%  Similarity=0.120  Sum_probs=60.3

Q ss_pred             CeEEee-cceeEeecCCCeEEEEEee-ccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718          52 PEFEIK-LRNQTSRRGEPSVLQCEAK-GEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFT  129 (543)
Q Consensus        52 p~~~~~-~~~~~v~~g~~~~l~C~~~-g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~  129 (543)
                      |.+... +....+.+|+++.|.|.+. |.|.|.+.|++++.++..     ...      ....+.|.|.+++.+|+|.|+
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~-----~~~------~~~~~~L~i~~v~~~D~G~Y~   71 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-----VQS------DTGRSVLTVRNASLSAAGTRV   71 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC-----EEE------ESSEEEEEECSCCGGGCEEEE
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee-----eec------cCceeeEEcCccChhhCCcEE
Confidence            444444 4568889999999999875 789999999998877621     111      122368999999999999999


Q ss_pred             EEEecccceee
Q psy3718         130 CEIKSQKISSQ  140 (543)
Q Consensus       130 C~a~n~~~sv~  140 (543)
                      |.|+|..++++
T Consensus        72 C~Asn~~g~~~   82 (90)
T d1gsma1          72 CVGSCGGRTFQ   82 (90)
T ss_dssp             EEEEETTEEEE
T ss_pred             EEEEeCCCcEE
Confidence            99999988754

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.3e-12  Score=102.05  Aligned_cols=108  Identities=24%  Similarity=0.360  Sum_probs=84.5

Q ss_pred             CCCCCCccEEEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCc
Q psy3718         231 GSSEPSDTVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGK  310 (543)
Q Consensus       231 G~~~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~  310 (543)
                      |.+..|..+.+.|....|..+|..+ +...+.+.+.|.|+++.....++.+.+|+|+|+..+.....   ...      .
T Consensus         1 G~s~~S~~v~v~T~~~~P~~pp~~~-~~~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~~~---~~~------~   70 (117)
T d1wj3a_           1 GSSGSSGTVNVTTKKTPPSQPPGNV-VWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQ---VLN------T   70 (117)
T ss_dssp             CCCCCCCCCCCCCSCCCCCCCCCSC-BCCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSCE---EEE------E
T ss_pred             CcCCCCCCEEEEcCCCCcCCCCcce-EEeecCCEEEEEEeecccccCCCceeEEEEEEEecCCCcee---eee------c
Confidence            5677888899999988887777665 44567889999999876655578999999999887654321   111      2


Q ss_pred             eeEEEECCCCCCCEEEEEEEEEeCCCCCCCCcceeeec
Q psy3718         311 EHHLTLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYT  348 (543)
Q Consensus       311 ~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t  348 (543)
                      ...+.+.+|.+++.|.|+|+|+|..|.|++|+.+.+.+
T Consensus        71 ~~~~~~~~L~p~t~Y~~~V~A~n~~G~G~~S~~v~v~~  108 (117)
T d1wj3a_          71 NKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPR  108 (117)
T ss_dssp             SSSEEEEECCCSSCEEEEEEEEESSCCCCBCCCEEECC
T ss_pred             eeeEEEeeccCCcEEEEEEEEEcCCccCCCCCCEEEec
Confidence            23567778999999999999999999999999877644

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=3.2e-13  Score=101.37  Aligned_cols=86  Identities=22%  Similarity=0.339  Sum_probs=67.0

Q ss_pred             ecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccc
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQK  136 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  136 (543)
                      .+.+..+.+|++++|.|.+.+ +.+.+.|++++..+...  .++.+..    .  .+.|.|.+++.+|+|.|+|.|.|..
T Consensus         9 ~~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~--~~~~~~~----~--~~~L~I~~v~~~d~G~Y~C~a~N~~   79 (96)
T d1l6za2           9 QVTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLT--ERMTLSQ----N--NSILRIDPIKREDAGEYQCEISNPV   79 (96)
T ss_dssp             ECSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCC--TTEEEET----T--TTEEEECSCCGGGCEEEEEEEESSS
T ss_pred             EcCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccc--cceeccC----C--ceEEEEeccchhhceEEEEEEEeCC
Confidence            457788999999999999877 55899999999998643  3444331    1  1479999999999999999999998


Q ss_pred             ceeeeeeeecccccc
Q psy3718         137 ISSQQMTYEASGLKK  151 (543)
Q Consensus       137 ~sv~~~~~~v~~l~~  151 (543)
                      |...+.++.|.++.+
T Consensus        80 g~~~S~~~~L~V~~~   94 (96)
T d1l6za2          80 SVRRSNSIKLDIIFD   94 (96)
T ss_dssp             CCEECCCCEEEECCS
T ss_pred             CCeEEEeEEEEEEcC
Confidence            876655666655443

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.9e-13  Score=100.18  Aligned_cols=83  Identities=20%  Similarity=0.380  Sum_probs=65.1

Q ss_pred             CCCeEEeecc-eeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccE
Q psy3718          50 APPEFEIKLR-NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALF  128 (543)
Q Consensus        50 ~~p~~~~~~~-~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y  128 (543)
                      .+|.|...+. ...+.+|+++.|.|.+. .|.+.+.|+|||.+|... +.++.+..    .+..+.|.|.++..+|+|.|
T Consensus         4 ~~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~-~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y   77 (94)
T d1pd6a_           4 KSTAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMS-GSKYIFES----IGAKRTLTISQCSLADDAAY   77 (94)
T ss_dssp             TTSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCC-SSSSEEEE----ETTEEEEEECSCSSSSCEEE
T ss_pred             CCCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceee-eeeEeeec----cCCeEEeecCCCCceecEEE
Confidence            4677777765 46799999999999985 488999999999999653 33444432    23457899999999999999


Q ss_pred             EEEEecccce
Q psy3718         129 TCEIKSQKIS  138 (543)
Q Consensus       129 ~C~a~n~~~s  138 (543)
                      +|.|.|..++
T Consensus        78 ~c~a~n~~~s   87 (94)
T d1pd6a_          78 QCVVGGEKCS   87 (94)
T ss_dssp             EEEETTEEEC
T ss_pred             EEEEeeEEEE
Confidence            9999996443

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.38  E-value=5.1e-14  Score=103.78  Aligned_cols=78  Identities=18%  Similarity=0.213  Sum_probs=64.8

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEe
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIK  133 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  133 (543)
                      |..+++++.+.+|+++.|.|.+ +.|.|.+.|+|||.++..  +.++.+..    .+..+.|.|.+++.+|+|.|+|.|.
T Consensus         4 i~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~--~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y~c~a~   76 (89)
T d1tiua_           4 VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTA--SPDCEIIE----DGKKHILILHNCQLGMTGEVSFQAA   76 (89)
T ss_dssp             CSBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCS--SSSCEEEE----CSSCEEEECCSCCSCCCSEECCBCS
T ss_pred             EEcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeeccc--ceeEEEEe----eceeEEEEEcCCChhcCEEEEEEEC
Confidence            5567889999999999999998 578899999999999874  34555542    3455789999999999999999999


Q ss_pred             cccce
Q psy3718         134 SQKIS  138 (543)
Q Consensus       134 n~~~s  138 (543)
                      |..++
T Consensus        77 n~~~s   81 (89)
T d1tiua_          77 NAKSA   81 (89)
T ss_dssp             SCBCC
T ss_pred             ceEEE
Confidence            96544

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=6.9e-13  Score=103.60  Aligned_cols=101  Identities=23%  Similarity=0.341  Sum_probs=78.9

Q ss_pred             CCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEE
Q psy3718         246 EAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQY  325 (543)
Q Consensus       246 ~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y  325 (543)
                      ++| .+|.++.+..++.+++.|+|.++.+.  +..+.+|.|+|+.......|.....     ......|++.+|.|++.|
T Consensus        14 ~~P-~pP~~~~v~~~~~~sv~l~W~p~~~~--~~~i~~Y~v~~~~~~~~~~~~~~~~-----~~~~~~~~v~~L~p~t~Y   85 (117)
T d1uema_          14 DLP-GPPSKPQVTDVTKNSVTLSWQPGTPG--TLPASAYIIEAFSQSVSNSWQTVAN-----HVKTTLYTVRGLRPNTIY   85 (117)
T ss_dssp             CSC-BCCCCCEEEEECSSCEEEECCCCBCS--SSCCCEEEEEEEETTTEEEEEEEEE-----EECSSEEEECSCCTTCEE
T ss_pred             ccC-cCCCCCEEEEccCCEEEEEEECCCcC--CCCeEEEEEEEeccCCceeeEEecc-----ccccccceECCCCCCCEE
Confidence            455 58889999999999999999987654  6789999999988765544433222     124568999999999999


Q ss_pred             EEEEEEEeCCCCCCCCccee-eeccCCCCC
Q psy3718         326 SVVVQALNKLGPGPMSEEVK-QYTAEGTPE  354 (543)
Q Consensus       326 ~~~V~a~n~~G~s~~s~~~~-~~t~~~~p~  354 (543)
                      .|+|+|+|..|.|++++... ++|.+..|.
T Consensus        86 ~frV~A~N~~G~s~~S~~s~~v~t~~~~Ps  115 (117)
T d1uema_          86 LFMVRAINPQGLSDPSPMSDPVRTQDSGPS  115 (117)
T ss_dssp             EEEEEEEETTEEEEECCCCCCEECCCSSCC
T ss_pred             EEEEEEEeCCcCCCCcCCCcCEEeCCCCcC
Confidence            99999999999998887653 667666553

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.7e-13  Score=101.49  Aligned_cols=79  Identities=15%  Similarity=0.217  Sum_probs=64.6

Q ss_pred             eCCCeEEeecceeEeecCCCeEEEEEeeccCC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        49 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      ..+|.|...+..+.+.+|++++|.|.+.|.|+ +++.|+|++.++...  .+.....    +   ..|.|.+++.+|+|.
T Consensus         4 ~~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~--~~~~~~~----~---~~L~I~~v~~~D~G~   74 (93)
T d1n26a1           4 RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH--PSRWAGM----G---RRLLLRSVQLHDSGN   74 (93)
T ss_dssp             SCCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCC--CEEEEEE----S---SEEEECSCCGGGCEE
T ss_pred             CCCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccce--eeEEecC----C---CEEEECCCChhcCEE
Confidence            46788999999999999999999999998765 699999999988532  2222211    1   379999999999999


Q ss_pred             EEEEEeccc
Q psy3718         128 FTCEIKSQK  136 (543)
Q Consensus       128 Y~C~a~n~~  136 (543)
                      |+|.|.|..
T Consensus        75 Y~C~a~n~~   83 (93)
T d1n26a1          75 YSCYRAGRP   83 (93)
T ss_dssp             EEEESSSSC
T ss_pred             EEEEECCcc
Confidence            999999863

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=2.9e-13  Score=100.10  Aligned_cols=78  Identities=21%  Similarity=0.324  Sum_probs=62.2

Q ss_pred             CCeEEe-ecceeEeecCCCeEEEEEee-ccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccE
Q psy3718          51 PPEFEI-KLRNQTSRRGEPSVLQCEAK-GEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALF  128 (543)
Q Consensus        51 ~p~~~~-~~~~~~v~~g~~~~l~C~~~-g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y  128 (543)
                      ||.+.. .|.+..+.+|+++.|.|.+. +.|.+.+.|+|++..+...   +....     +   +.|.|.++..+|+|.|
T Consensus         1 P~~v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~---~~~~~-----~---~~L~i~~v~~~d~G~Y   69 (89)
T d1gl4b_           1 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS---RAMDF-----N---GILTIRNVQPSDAGTY   69 (89)
T ss_dssp             CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT---TEEEE-----T---TEEEECSCCGGGCEEE
T ss_pred             CCEEEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecc---ccEee-----c---eEEEEecCCcccCEEE
Confidence            344444 57788999999999999997 5788999999999887532   22221     2   3799999999999999


Q ss_pred             EEEEeccccee
Q psy3718         129 TCEIKSQKISS  139 (543)
Q Consensus       129 ~C~a~n~~~sv  139 (543)
                      +|.|.|..|..
T Consensus        70 ~C~a~N~~G~~   80 (89)
T d1gl4b_          70 VCTGSNMFAMD   80 (89)
T ss_dssp             EEEEECSSCEE
T ss_pred             EEEEEECCCEE
Confidence            99999998874

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2e-12  Score=98.76  Aligned_cols=99  Identities=22%  Similarity=0.404  Sum_probs=79.8

Q ss_pred             eccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCC
Q psy3718         242 LTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKT  321 (543)
Q Consensus       242 ~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p  321 (543)
                      +|....| .+|.++++...+.+++.|+|.++...  ++++..|.|+|+.......+. ...     .+....+.+.+|.|
T Consensus         5 ~T~~~~P-~~P~~~~~~~~~~~sv~l~W~pp~~~--~~~i~~Y~i~~~~~~~~~~~~-~~~-----~~~~~~~~~~~L~p   75 (105)
T d1x3da1           5 TTLSCEP-DIPNPPRIANRTKNSLTLQWKAPSDN--GSKIQNFVLEWDEGKGNGEFC-QCY-----MGSQKQFKITKLSP   75 (105)
T ss_dssp             CCCCSCC-CCCCCCEEEEEETTEEEEECCCCCCC--SSCEEEEEEEECTTTSSSCCE-EEE-----EESCSEEEEESCCT
T ss_pred             ECCCCCC-cCCCCCEEEEccCCEEEEEEECCCCC--cCccEEEEEEEecCCCcceeE-EEe-----cCCccEEEecCCcC
Confidence            3444444 68999999999999999999998765  678999999987655443222 111     23567899999999


Q ss_pred             CCEEEEEEEEEeCCCCCCCCcceeeecc
Q psy3718         322 YTQYSVVVQALNKLGPGPMSEEVKQYTA  349 (543)
Q Consensus       322 ~t~Y~~~V~a~n~~G~s~~s~~~~~~t~  349 (543)
                      ++.|.|+|+|+|..|.|++|+.+.++|.
T Consensus        76 ~t~Y~frV~A~N~~G~s~~S~~~~~~T~  103 (105)
T d1x3da1          76 AMGCKFRLSARNDYGTSGFSEEVLYYTS  103 (105)
T ss_dssp             TCEEEEECCEEESSCBCCCCCCEEEECS
T ss_pred             CcEEEEEEEEECCCeEcCCCCcEEEECC
Confidence            9999999999999999999999988874

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.2e-12  Score=95.80  Aligned_cols=92  Identities=21%  Similarity=0.294  Sum_probs=75.9

Q ss_pred             CCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEE
Q psy3718         251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQ  330 (543)
Q Consensus       251 ~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~  330 (543)
                      +|..+++...+.++|.|.|.+|...  ++.+.+|.+.|+........... .     ......+.+.+|.|++.|.|+|+
T Consensus         3 ~~~~l~~~~~t~~si~l~W~~p~~~--~g~i~~Y~v~~~~~~~~~~~~~~-~-----~~~~~~~~i~~L~p~t~Y~~~V~   74 (95)
T d2djsa1           3 TVPIMHQVSATMRSITLSWPQPEQP--NGIILDYEIRYYEKEHNEFNSSM-A-----RSQTNTARIDGLRPGMVYVVQVR   74 (95)
T ss_dssp             CCSCCEEEEECSSEEEEECCCCSCC--SSCEEEEEEEEEETTSCSTTCEE-E-----EESSSEEEEESCCTTCEEEEEEE
T ss_pred             CCCccEEEeecCCEEEEEEEECCCC--CcceEEeeeeeeeeccCcceeEe-e-----cCCccEEEEeecCCccEEEEEEE
Confidence            4447899999999999999998765  78999999999987655433222 1     22557899999999999999999


Q ss_pred             EEeCCCCCCCCcceeeeccC
Q psy3718         331 ALNKLGPGPMSEEVKQYTAE  350 (543)
Q Consensus       331 a~n~~G~s~~s~~~~~~t~~  350 (543)
                      |+|..|.|++|+.+.++|.+
T Consensus        75 A~n~~G~g~~S~~~~~~T~~   94 (95)
T d2djsa1          75 ARTVAGYGKFSGKMCFQTLT   94 (95)
T ss_dssp             EEESSCEEEECCCEEEECCC
T ss_pred             EEcCCCCCCCCCCEEEEeCC
Confidence            99999999999999998864

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.5e-12  Score=94.90  Aligned_cols=91  Identities=23%  Similarity=0.256  Sum_probs=74.1

Q ss_pred             CCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEE
Q psy3718         249 SGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVV  328 (543)
Q Consensus       249 ~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~  328 (543)
                      |++|.++.+...+.+++.|.|.++.+.  ++++.+|.|+|+..+.... ....+     .....++.+.+|.|++.|.|+
T Consensus         1 P~~P~~~~~~~~~~~sv~l~W~~p~~~--~~~I~~Y~i~~~~~~~~~~-~~~~~-----~~~~~~~~i~~L~p~t~Y~~~   72 (93)
T d2vkwa2           1 PSAPKLEGQMGEDGNSIKVNLIKQDDG--GSPIRHYLVRYRALSSEWK-PEIRL-----PSGSDHVMLKSLDWNAEYEVY   72 (93)
T ss_dssp             CCCCEEEEEECTTSSCEEEEEECCCCT--TSCCCEEEEEEEETTSCCC-CCEEE-----CTTCCEEEECSCCTTCEEEEE
T ss_pred             CCCCccCEeEEcCCCEEEEEeeCCCCC--cCceEEEEEEeeecCccee-eeeec-----cCCceEEEEeccccceEEEEE
Confidence            358889999999999999999999754  6889999999998775432 11122     456789999999999999999


Q ss_pred             EEEEeCCCCCCCCcceeeec
Q psy3718         329 VQALNKLGPGPMSEEVKQYT  348 (543)
Q Consensus       329 V~a~n~~G~s~~s~~~~~~t  348 (543)
                      |.|+|..|.|+++. +.++|
T Consensus        73 V~A~N~~G~s~ps~-~~~~T   91 (93)
T d2vkwa2          73 VVAENQQGKSKAAH-FVFRT   91 (93)
T ss_dssp             EEEEETTEECCCEE-EEEEC
T ss_pred             EEEEcCCCCcCCEe-EEEEe
Confidence            99999999998775 55655

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=1.3e-12  Score=97.21  Aligned_cols=91  Identities=23%  Similarity=0.338  Sum_probs=75.3

Q ss_pred             CCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEE
Q psy3718         248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSV  327 (543)
Q Consensus       248 p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~  327 (543)
                      |+.+|.+|++...++++|.|+|.++.... .+.+..|.|.|+..+...    ...      ....+++|.+|.|++.|.|
T Consensus         2 ~p~~p~~L~~~~~~~~si~vsW~~p~~~~-~~~~i~Y~i~~~~~~~~~----~~~------~~~t~~~i~~L~p~t~Y~~   70 (94)
T d1x5aa1           2 ESLSGLSLKLVKKEPRQLELTWAGSRPRN-PGGNLSYELHVLNQDEEW----HQM------VLEPRVLLTKLQPDTTYIV   70 (94)
T ss_dssp             CCCCSCCCCEEEEETTEEEEECCCCCSSC-CSSCCEEEEEEECSSCEE----EEE------ESSSEEEEESCCSSCEEEE
T ss_pred             cCCCCCceEEEEcCCCEEEEEEecccCCC-CCcEEEEEEEEecCCceE----EEe------eccCEEEECCCCCCCEEEE
Confidence            55688899999999999999999986554 566779999998765321    111      1357899999999999999


Q ss_pred             EEEEEeCCCCCCCCcceeeecc
Q psy3718         328 VVQALNKLGPGPMSEEVKQYTA  349 (543)
Q Consensus       328 ~V~a~n~~G~s~~s~~~~~~t~  349 (543)
                      +|+|.|..|.|++|..+.++|.
T Consensus        71 rV~A~n~~G~g~~S~~~~~~T~   92 (94)
T d1x5aa1          71 RVRTLTPLGPGPFSPDHEFRTS   92 (94)
T ss_dssp             EEEEECSSSCCCCCCCEEEECC
T ss_pred             EEEEEcCCcCcCCCCCEEEEeC
Confidence            9999999999999999999885

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.5e-13  Score=105.14  Aligned_cols=90  Identities=16%  Similarity=0.298  Sum_probs=66.2

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEe-eccCCceEEEccCCeecCCCCCCceEEee-eecCCCceeeEEEEeeecCCCccE
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEA-KGEKPIGILWNMNNKRLDPKSDNRYTIRE-EILPNGVLSDLSIKRTERGDSALF  128 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y  128 (543)
                      ||.+........+..|++++|.|.+ .|.|.+.+.|+|++..+............ ........+.|.|.+++.+|+|.|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y   81 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY   81 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE
Confidence            5665555555678899999999998 58999999999999988654332222111 111122345799999999999999


Q ss_pred             EEEEecccceee
Q psy3718         129 TCEIKSQKISSQ  140 (543)
Q Consensus       129 ~C~a~n~~~sv~  140 (543)
                      +|.|+|..|+..
T Consensus        82 ~C~a~N~~G~~~   93 (104)
T d1nbqa2          82 SCEARNGYGTPM   93 (104)
T ss_dssp             EEEEECSSSCCE
T ss_pred             EEEEEECCCceE
Confidence            999999988743

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.36  E-value=1.8e-13  Score=104.47  Aligned_cols=77  Identities=17%  Similarity=0.190  Sum_probs=61.9

Q ss_pred             cceeEeecCCCeEEEEEe-eccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccc
Q psy3718          58 LRNQTSRRGEPSVLQCEA-KGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQK  136 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  136 (543)
                      +..+.+.+|+++.|.|.+ .|.|.+.+.|+||+.++....+.++.+..   .+   ++|.|.+++.+|+|.|+|.|+|..
T Consensus        11 ~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~---~~---~~L~I~~v~~~D~G~Y~C~a~N~~   84 (105)
T d1cs6a2          11 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQ---TT---GNLYIAKTEASDLGNYSCFATSHI   84 (105)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECT---TT---CCEEESSCCGGGCEEEEEEEEEEE
T ss_pred             CCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeec---CC---CEEeecccccccCcEEEEEEEECC
Confidence            456889999999999997 68899999999999887554444443321   22   479999999999999999999987


Q ss_pred             ceee
Q psy3718         137 ISSQ  140 (543)
Q Consensus       137 ~sv~  140 (543)
                      |++.
T Consensus        85 g~~~   88 (105)
T d1cs6a2          85 DFIT   88 (105)
T ss_dssp             TTEE
T ss_pred             CCEE
Confidence            7754

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.36  E-value=4.9e-13  Score=98.09  Aligned_cols=78  Identities=14%  Similarity=0.146  Sum_probs=59.8

Q ss_pred             ecceeEeecCCCeEEEEEeec-cCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g-~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      .+....+.+|++++|.|.+.+ .|.+.+.|+||+..+....              ....|.|.+++.+|+|.|+|.|.|.
T Consensus         6 q~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~--------------~~~~l~i~~v~~~dsG~Y~C~a~n~   71 (88)
T d2fcba2           6 QTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR--------------SDPNFSIPQANHSHSGDYHCTGNIG   71 (88)
T ss_dssp             ECSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES--------------SCCEEEETTCCGGGCEEEEEEEEET
T ss_pred             eCCCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccccc--------------cccccccCccCHHHCCeEEEEEEeC
Confidence            344556889999999999975 4668999999998874211              1136999999999999999999998


Q ss_pred             cceeeeeeeeccc
Q psy3718         136 KISSQQMTYEASG  148 (543)
Q Consensus       136 ~~sv~~~~~~v~~  148 (543)
                      .+...+.+..|.+
T Consensus        72 ~g~~~S~~v~l~V   84 (88)
T d2fcba2          72 YTLYSSKPVTITV   84 (88)
T ss_dssp             TEEEECCCEEEEE
T ss_pred             CCCEEeeeEEEEE
Confidence            8775555555544

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.1e-12  Score=100.00  Aligned_cols=101  Identities=20%  Similarity=0.326  Sum_probs=78.9

Q ss_pred             CCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEE
Q psy3718         246 EAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQY  325 (543)
Q Consensus       246 ~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y  325 (543)
                      ++| ++|.++++...+.+++.|+|.++.+.  ++++..|.|+|+.........+..............+.+.+|.|++.|
T Consensus         9 ~~P-~~P~~~~~~~~~~~sv~l~W~pp~~~--~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y   85 (111)
T d1wisa1           9 ELP-GPPTNLGISNIGPRSVTLQFRPGYDG--KTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCY   85 (111)
T ss_dssp             CCC-CCCEEEEEESCCSSCEEEEEECCCCC--SSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSEE
T ss_pred             CCC-cCCCCCEEEEcCCCEEEEEEeCCCCC--CCceeEEEEeeeecccCCCcceeeeeeeecccceeEEEeCCCCCCCEE
Confidence            444 68999999999999999999988765  788999999998766544433333333333556788999999999999


Q ss_pred             EEEEEEEeCCCCCCCCcce-eeecc
Q psy3718         326 SVVVQALNKLGPGPMSEEV-KQYTA  349 (543)
Q Consensus       326 ~~~V~a~n~~G~s~~s~~~-~~~t~  349 (543)
                      .|+|+|+|..|.|++|++. .++|+
T Consensus        86 ~frV~A~N~~G~s~~S~~s~~~~Tl  110 (111)
T d1wisa1          86 SFRMRQVNIVGTSPPSQPSRKIQTL  110 (111)
T ss_dssp             CCCCEEECSSCBCCCCCCCCCEECC
T ss_pred             EEEEEEEcCCcCCCCcCCCCCEEcc
Confidence            9999999999999888753 35554

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.5e-12  Score=96.29  Aligned_cols=78  Identities=15%  Similarity=0.256  Sum_probs=60.1

Q ss_pred             EEeecc-eeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEE
Q psy3718          54 FEIKLR-NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEI  132 (543)
Q Consensus        54 ~~~~~~-~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a  132 (543)
                      |...|. ...+.+|+++.|.|.+.|.|.|.+.|++++..+..  . ....      ....+.|.|.++..+|+|.|+|.|
T Consensus         3 i~i~P~~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~--~-~~~~------~~~~~~L~I~~v~~~d~G~Y~C~a   73 (90)
T d1vcaa2           3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--G-KVTN------EGTTSTLTMNPVSFGNEHSYLCTA   73 (90)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--S-EEEE------ETTEEEEEESSCCGGGCSEEEEEE
T ss_pred             EEEECCCcEEEECCCEEEEEEeccCCCCceEEEEecCcccee--e-eeee------ecCCcEEEEecccccccceEEEEE
Confidence            344444 45667999999999999999999999998776532  1 1111      123368999999999999999999


Q ss_pred             ecccceee
Q psy3718         133 KSQKISSQ  140 (543)
Q Consensus       133 ~n~~~sv~  140 (543)
                      .|..|+++
T Consensus        74 ~N~~g~~~   81 (90)
T d1vcaa2          74 TCESRKLE   81 (90)
T ss_dssp             EETTEEEE
T ss_pred             EeCCCEEE
Confidence            99988753

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.5e-13  Score=97.02  Aligned_cols=66  Identities=15%  Similarity=0.187  Sum_probs=55.2

Q ss_pred             ceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccce
Q psy3718          59 RNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS  138 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s  138 (543)
                      .+..+.+|++++|.|.+.|.|.|++.|++++..+..        .     +   ..|.|.++..+|+|.|+|.|.|..|+
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~--------~-----~---~~l~i~~v~~~DsG~Y~C~a~N~~g~   70 (84)
T d2nxyb2           7 SDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ--------G-----G---KTLSVSQLELQDSGTWTCTVLQNQKK   70 (84)
T ss_dssp             CSSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEE--------E-----S---SEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCeEEECCCeEEEEEEeEcCCchheEEEeeccccee--------e-----e---eeeeeeecccccccEEEEEEEeCCCE
Confidence            356789999999999999999999999987654421        0     1   36999999999999999999999887


Q ss_pred             ee
Q psy3718         139 SQ  140 (543)
Q Consensus       139 v~  140 (543)
                      ..
T Consensus        71 ~~   72 (84)
T d2nxyb2          71 VE   72 (84)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.1e-12  Score=96.30  Aligned_cols=83  Identities=14%  Similarity=0.251  Sum_probs=63.7

Q ss_pred             EeecceeEeecCCCeEEEEEeecc-CCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEe
Q psy3718          55 EIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIK  133 (543)
Q Consensus        55 ~~~~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  133 (543)
                      +..+....+.+|++++|.|.+.+. |..++.|+|||..+.....              ...|.|.+++.+|+|.|.|.|.
T Consensus         4 ilq~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~--------------~~~l~i~~~~~~dsG~Y~C~a~   69 (89)
T d1f2qa2           4 LLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE--------------NHNISITNATVEDSGTYYCTGK   69 (89)
T ss_dssp             EEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC--------------SSEEEESSCCGGGCEEEEEEEE
T ss_pred             EEeCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccccc--------------cceEEEeeeeeecCcEEEEEEE
Confidence            344556667899999999999776 5579999999998853211              1369999999999999999999


Q ss_pred             cccceeeeeeeecccccc
Q psy3718         134 SQKISSQQMTYEASGLKK  151 (543)
Q Consensus       134 n~~~sv~~~~~~v~~l~~  151 (543)
                      |..+...+.+..|.+..+
T Consensus        70 n~~~~~~S~~v~i~V~~~   87 (89)
T d1f2qa2          70 VWQLDYESEPLNITVIKA   87 (89)
T ss_dssp             ETTEEEECCCEEEEEECS
T ss_pred             eCCCCeEeeeEEEEEEeC
Confidence            987776666666655443

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.2e-12  Score=98.07  Aligned_cols=89  Identities=17%  Similarity=0.142  Sum_probs=66.3

Q ss_pred             CCeEEeecc-eeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCC------CceeeEEEEeeecC
Q psy3718          51 PPEFEIKLR-NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN------GVLSDLSIKRTERG  123 (543)
Q Consensus        51 ~p~~~~~~~-~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~L~i~~~~~~  123 (543)
                      .|.|..++. .+.+..|+++.|.|.+.|.|.|.+.|++||..+.................      ...+.|.|.+++.+
T Consensus         1 kP~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   80 (107)
T d1iray3           1 RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR   80 (107)
T ss_dssp             CCEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG
T ss_pred             CCCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchH
Confidence            366766544 46788999999999999999999999999999864433222211111111      12468999999999


Q ss_pred             CCcc-EEEEEeccccee
Q psy3718         124 DSAL-FTCEIKSQKISS  139 (543)
Q Consensus       124 D~G~-Y~C~a~n~~~sv  139 (543)
                      |.|. |+|.|+|..|..
T Consensus        81 D~g~~Y~C~A~N~~G~~   97 (107)
T d1iray3          81 FYKHPFTCFAKNTHGID   97 (107)
T ss_dssp             GGSSCEEEEEECSSCEE
T ss_pred             HCCcEEEEEEEeCCCeE
Confidence            9995 999999998875

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.3e-12  Score=95.16  Aligned_cols=90  Identities=22%  Similarity=0.303  Sum_probs=73.4

Q ss_pred             CCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEE
Q psy3718         250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVV  329 (543)
Q Consensus       250 ~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V  329 (543)
                      .+|..+.+...+.+++.|+|.++...  ++.+.+|.|+|+..+... +.  ..     .....++.|.+|.|++.|.|+|
T Consensus         2 ~~P~~~~v~~~s~~si~l~W~~p~~~--~~~i~~Y~v~~~~~~~~~-~~--~~-----~~~~~~~~i~~L~p~t~Y~~~V   71 (93)
T d1x4xa1           2 DQCKPPQVTCRSATCAQVNWEVPLSN--GTDVTEYRLEWGGVEGSM-QI--CY-----CGPGLSYEIKGLSPATTYYCRV   71 (93)
T ss_dssp             CCCCCCCCEEEETTEEEEECCCCSCS--SSCCCEEEEEEESSTTSC-CE--EE-----EESCSEEEEESCCSSCEEEEEE
T ss_pred             cCCCCCEEEEeCCCeEEEEEEecccC--CCeeEEEEEEEccCCCcc-eE--ee-----cCCccEEEEcccceeeEEEEEE
Confidence            35666777788899999999998765  678999999998765442 21  12     2356789999999999999999


Q ss_pred             EEEeCCCCCCCCcceeeecc
Q psy3718         330 QALNKLGPGPMSEEVKQYTA  349 (543)
Q Consensus       330 ~a~n~~G~s~~s~~~~~~t~  349 (543)
                      +|+|..|.|++|..+.++|.
T Consensus        72 ~A~n~~G~s~~S~~~~~~Tp   91 (93)
T d1x4xa1          72 QALSVVGAGPFSEVVACVTP   91 (93)
T ss_dssp             EEECSSCCCCBCCCEEEECC
T ss_pred             EEEECCcCcCCCCcEEEEeC
Confidence            99999999999999988874

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.4e-12  Score=100.21  Aligned_cols=103  Identities=17%  Similarity=0.339  Sum_probs=74.4

Q ss_pred             cEEEeccCCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEEC
Q psy3718         238 TVTILTAEEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLS  317 (543)
Q Consensus       238 ~~~~~t~~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  317 (543)
                      .+.+++.+..|. .|. +.+...+.+++.|.|.+|.+.  ++++.+|.|+|+..+...  ....   .........+.|.
T Consensus         4 ~l~v~~~P~~P~-~p~-~~~~~~~~~sv~l~W~~P~~~--~~~I~~Y~v~~~~~~~~~--~~~~---~~~~~~~~~~~i~   74 (108)
T d1wf5a1           4 HLRVRQLPHAPE-HPV-ATLSTVERRAINLTWTKPFDG--NSPLIRYILEMSENNAPW--TVLL---ASVDPKATSVTVK   74 (108)
T ss_dssp             CSSCCCCCCCCS-SCE-EEECSSSTTEEEEECCCCCCC--SSCEEEEEEEEECTTCCC--EEEE---SSCCTTCCEEEEE
T ss_pred             ccEEecCCCCCC-CCE-EEEEeccCCEEEEEEECCCCC--CCccEEEEEEEEeccCCc--eEEe---eeecCCccEEEEC
Confidence            444554444332 332 445567888999999998654  678999999998766432  1111   1224566789999


Q ss_pred             CCCCCCEEEEEEEEEeCCCCCCCCcceeeecc
Q psy3718         318 SLKTYTQYSVVVQALNKLGPGPMSEEVKQYTA  349 (543)
Q Consensus       318 ~L~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t~  349 (543)
                      +|.|++.|.|+|+|+|..|.|++|+.....|.
T Consensus        75 ~L~p~t~Y~frV~A~N~~G~s~~S~~~~~~t~  106 (108)
T d1wf5a1          75 GLVPARSYQFRLCAVNDVGKGQFSKDTERVSL  106 (108)
T ss_dssp             SCCTTCEEEEEEEEEESSCEEEECCCCSCEEC
T ss_pred             CCCCCCEEEEEEEEEcCCcCCCCcCCcCCEEC
Confidence            99999999999999999999988887766553

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.9e-12  Score=98.97  Aligned_cols=95  Identities=11%  Similarity=0.019  Sum_probs=69.5

Q ss_pred             cceeEeecCCCeEEEE---EeeccCCceEEEccCCeecCCCCCCceEEeeeec-CCCceeeEEEEeeecCCCccEEEEEe
Q psy3718          58 LRNQTSRRGEPSVLQC---EAKGEKPIGILWNMNNKRLDPKSDNRYTIREEIL-PNGVLSDLSIKRTERGDSALFTCEIK  133 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C---~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~  133 (543)
                      |.++.+..|....+.|   .+.|.|.|++.|+|||.+|......+..+..... .....+.|.|.++..+|+|.|+|.|+
T Consensus         4 p~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~   83 (107)
T d1he7a_           4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA   83 (107)
T ss_dssp             CCCCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEE
T ss_pred             CCEeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEE
Confidence            5566666777777665   7899999999999999999755444333332211 12245679999999999999999999


Q ss_pred             cccceeeeeeeecccccccc
Q psy3718         134 SQKISSQQMTYEASGLKKKQ  153 (543)
Q Consensus       134 n~~~sv~~~~~~v~~l~~~~  153 (543)
                      |..|+. ...+.+.++.+..
T Consensus        84 N~~G~~-~~~i~v~v~~~P~  102 (107)
T d1he7a_          84 NPFGQA-SASIMAAFMDNPF  102 (107)
T ss_dssp             ETTEEE-EEEEEECCCSCTT
T ss_pred             eCCCEE-EEEEEEEEEcCCC
Confidence            999985 4556666665553

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=5.2e-13  Score=103.23  Aligned_cols=90  Identities=16%  Similarity=0.204  Sum_probs=62.0

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEee-ccCCceEEEccCCeecCCCCCCceEEee--eecCCCceeeEEEEeeecCCCcc
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAK-GEKPIGILWNMNNKRLDPKSDNRYTIRE--EILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~-g~p~~~i~W~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      ||.+........+.+|++++|.|.+. |.|.+.+.|+|++..+............  ........+.|.|.+++.+|+|.
T Consensus         2 PP~~p~~~~~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~   81 (110)
T d1f97a2           2 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGE   81 (110)
T ss_dssp             CCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEE
T ss_pred             CCccceeCCCCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEE
Confidence            44443333344688999999999985 8999999999999988554332221110  00112233579999999999999


Q ss_pred             EEEEEecccceee
Q psy3718         128 FTCEIKSQKISSQ  140 (543)
Q Consensus       128 Y~C~a~n~~~sv~  140 (543)
                      |+|.|+|..|+..
T Consensus        82 Y~C~a~N~~G~~~   94 (110)
T d1f97a2          82 YYCQAQNGYGTAM   94 (110)
T ss_dssp             EEEEEECSSSCCE
T ss_pred             EEEEEEECCCcEE
Confidence            9999999988754

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.3e-12  Score=100.65  Aligned_cols=105  Identities=19%  Similarity=0.263  Sum_probs=72.8

Q ss_pred             CCCCCCcceeeeccCCCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEe
Q psy3718         336 GPGPMSEEVKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASW  415 (543)
Q Consensus       336 G~s~~s~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W  415 (543)
                      |.|++|..+.++|.+.+|..+|.++. ...+.+.+.|.|++++....++.|.+|+|+|                      
T Consensus         1 G~s~~S~~v~v~T~~~~P~~pp~~~~-~~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y----------------------   57 (117)
T d1wj3a_           1 GSSGSSGTVNVTTKKTPPSQPPGNVV-WNATDTKVLLNWEQVKAMENESEVTGYKVFY----------------------   57 (117)
T ss_dssp             CCCCCCCCCCCCCSCCCCCCCCCSCB-CCEETTEEEEECCCCCCCSSSCCEEEEEEEE----------------------
T ss_pred             CcCCCCCCEEEEcCCCCcCCCCcceE-EeecCCEEEEEEeecccccCCCceeEEEEEE----------------------
Confidence            66888999999999999988887764 3467888999999875444444555555544                      


Q ss_pred             eCCCCCCCCcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccc
Q psy3718         416 VSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRG  494 (543)
Q Consensus       416 ~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G  494 (543)
                                         +..+..  .....      .......+.+|+|+ .|.|+|+|              .|.+|
T Consensus        58 -------------------~~~~~~--~~~~~------~~~~~~~~~~L~p~t~Y~~~V~A--------------~n~~G   96 (117)
T d1wj3a_          58 -------------------RTSSQN--NVQVL------NTNKTSAELVLPIKEDYIIEVKA--------------TTDGG   96 (117)
T ss_dssp             -------------------EESSCS--SCEEE------EESSSEEEEECCCSSCEEEEEEE--------------EESSC
T ss_pred             -------------------EecCCC--ceeee------eceeeEEEeeccCCcEEEEEEEE--------------EcCCc
Confidence                               443321  11111      12223444599999 99999999              99999


Q ss_pred             cCCCcccccc
Q psy3718         495 ESDKCKNDRV  504 (543)
Q Consensus       495 ~g~~~~~~~v  504 (543)
                      .|.+|..+.+
T Consensus        97 ~G~~S~~v~v  106 (117)
T d1wj3a_          97 DGTSSEQIRI  106 (117)
T ss_dssp             CCCBCCCEEE
T ss_pred             cCCCCCCEEE
Confidence            9998865544

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5e-12  Score=94.59  Aligned_cols=83  Identities=33%  Similarity=0.464  Sum_probs=66.1

Q ss_pred             cCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCC
Q psy3718         260 TDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGP  339 (543)
Q Consensus       260 ~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~  339 (543)
                      ...++|.|+|.+|.... +..+..|.|+|+..+...+...  .     .+...++.+.+|.|++.|.|+|+|.|..|.|+
T Consensus        14 ~~~~sv~l~W~~P~~~g-g~~i~~Y~v~~~~~~~~~~~~~--~-----~~~~~~~~v~~L~p~t~Y~frV~A~N~~G~s~   85 (97)
T d2crza1          14 PKAKEIQLRWGPPLVDG-GSPISCYSVEMSPIEKDEPREV--Y-----QGSEVECTVSSLLPGKTYSFRLRAANKMGFGP   85 (97)
T ss_dssp             CCSSEEEEECCCCSCCT-TSCCCEEEEEEECTTSCCCEEE--E-----EESCSEEEEESCCTTCEEEECCEEECSSCBCC
T ss_pred             eeCCEEEEEEeCCCcCC-CCceeEEEEEEEcCcCCceeEe--e-----cCCceEEEEcCCCCCEEEEEEEEEecCCeEcC
Confidence            45789999999886542 4479999999987765443221  1     23457899999999999999999999999999


Q ss_pred             CCcceeeeccC
Q psy3718         340 MSEEVKQYTAE  350 (543)
Q Consensus       340 ~s~~~~~~t~~  350 (543)
                      +|+...++|.+
T Consensus        86 ~S~~~~~~T~p   96 (97)
T d2crza1          86 FSEKCDITTAP   96 (97)
T ss_dssp             CCCCEEEECCC
T ss_pred             CcCCCeEEeCc
Confidence            99999888753

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.33  E-value=6.8e-13  Score=97.45  Aligned_cols=76  Identities=16%  Similarity=0.127  Sum_probs=57.9

Q ss_pred             ecceeEeecCCCeEEEEEeec-cCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g-~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      .+....+.+|++++|.|.+.+ .|.+.+.|+|||..+...      .+        ...|.|.+++.+|+|.|+|.|.|.
T Consensus         8 q~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~------~~--------~~~l~I~~v~~~dsG~Y~C~a~n~   73 (89)
T d1fnla2           8 QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF------HH--------NSDFHIPKATLKDSGSYFCRGLVG   73 (89)
T ss_dssp             ECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE------EE--------CCCEEESSCCGGGCEEEEEEEEET
T ss_pred             ECCCCeEccCCeEEEEEEecCCCCCcEEEEEEccccccee------cc--------ccccEECccceeccceEEEEEEeC
Confidence            344455789999999999875 566799999999887421      11        136999999999999999999998


Q ss_pred             cceeeeeeeec
Q psy3718         136 KISSQQMTYEA  146 (543)
Q Consensus       136 ~~sv~~~~~~v  146 (543)
                      .+...+.+..|
T Consensus        74 ~~~~~S~~v~i   84 (89)
T d1fnla2          74 SKNVSSETVNI   84 (89)
T ss_dssp             TEEEECCCEEE
T ss_pred             CCCeEEeeEEE
Confidence            77655444444

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.2e-12  Score=97.25  Aligned_cols=89  Identities=20%  Similarity=0.299  Sum_probs=63.1

Q ss_pred             CCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEE
Q psy3718         351 GTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGY  430 (543)
Q Consensus       351 ~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y  430 (543)
                      .+|. +|.++++...+++++.|+|.+|                                           ...+|.|.+|
T Consensus         9 ~vP~-~P~~l~v~~~s~~si~l~W~~P-------------------------------------------~~~~g~i~~Y   44 (103)
T d1x5ga1           9 QLPG-PAPNLRAYAASPTSITVTWETP-------------------------------------------VSGNGEIQNY   44 (103)
T ss_dssp             SCCC-CCSSCEEEEEETTEEEEECCCC-------------------------------------------SCCSSCCSEE
T ss_pred             CCcc-cCCCcEEEEccCCEEEEEEECC-------------------------------------------cCCCccEEEE
Confidence            4454 7889999999999999999976                                           2224455555


Q ss_pred             EEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcccccc
Q psy3718         431 KVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDRV  504 (543)
Q Consensus       431 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~v  504 (543)
                      .|.|+..+..  ....+.     .....+.+.||+|+ .|.|+|+|              .|..|.|.+|....+
T Consensus        45 ~v~~~~~~~~--~~~~~~-----~~~~~~~i~~L~p~t~Y~~~V~A--------------~n~~G~g~~S~~v~v   98 (103)
T d1x5ga1          45 KLYYMEKGTD--KEQDVD-----VSSHSYTINGLKKYTEYSFRVVA--------------YNKHGPGVSTPDVAV   98 (103)
T ss_dssp             EEEEEETTCC--CCCCEE-----ECSSEEEECSCCTTCEEEEEEEE--------------ECSSCCCCBCCCCCE
T ss_pred             EEEEEeCCCc--eeEEEe-----ccccEEecCCCCCCCEEEEEEEE--------------EcCCcCcCCCCCEEE
Confidence            5555554432  122222     34455667799999 99999999              999999988765543

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5.2e-12  Score=96.87  Aligned_cols=100  Identities=20%  Similarity=0.322  Sum_probs=76.8

Q ss_pred             EeccCCCCCCCCee-eEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCC
Q psy3718         241 ILTAEEAPSGPPTH-IKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSL  319 (543)
Q Consensus       241 ~~t~~~~p~~~P~~-~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L  319 (543)
                      +.|.++.|. +|.. +.+...+++++.|+|.+|.... +..+..|.++|+..+....+....      ......+.+.+|
T Consensus         4 ~~T~~~~P~-~P~~~~~~~~~~~~sv~l~W~~P~~~~-g~~~~~y~v~~~~~~~~~~~~~~~------~~~~~~~~i~~L   75 (107)
T d2crma1           4 FTTCPDKPG-IPVKPSVKGKIHSHSFKITWDPPKDNG-GATINKYVVEMAEGSNGNKWEMIY------SGATREHLCDRL   75 (107)
T ss_dssp             CCSCCCCCC-CCCCCEEEEEEETTEEEEECCCCTTCC-SSCCCEEEEEEEESSSSCCCEEEE------CSSCSEEEECSC
T ss_pred             EECCCCCCc-CCCCCEEEeeecCCEEEEEEEECccCC-cceEEEEEEEEEeecCCCcEEEee------cCCccEEEEecc
Confidence            446666664 5555 4455678899999999886652 457899999998777655443221      345678999999


Q ss_pred             CCCCEEEEEEEEEeCCCCCCCCcceeeec
Q psy3718         320 KTYTQYSVVVQALNKLGPGPMSEEVKQYT  348 (543)
Q Consensus       320 ~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t  348 (543)
                      .|++.|.|+|+|+|..|.|++|+.+.++|
T Consensus        76 ~p~t~Y~~rV~A~n~~G~s~~S~~v~v~T  104 (107)
T d2crma1          76 NPGCFYRLRVYCISDGGQSAVSESLLVQT  104 (107)
T ss_dssp             CTTSCEEEEEEEEETTEECCCCCCCCCCC
T ss_pred             CCCCEEEEEEEEECCCcCcCCCCcEEEEC
Confidence            99999999999999999999999888776

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=8.8e-12  Score=98.95  Aligned_cols=109  Identities=20%  Similarity=0.443  Sum_probs=85.2

Q ss_pred             CCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEE
Q psy3718         246 EAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQY  325 (543)
Q Consensus       246 ~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y  325 (543)
                      +.| .+|.++++...+.+++.|+|.++...  ++.+..|.++|+..............    ......+.+.+|.|++.|
T Consensus        15 d~P-~~P~~~~v~~~~~~sv~l~W~~p~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~L~p~t~Y   87 (127)
T d1ueya_          15 DVP-NPPFDLELTDQLDKSVQLSWTPGDDN--NSPITKFIIEYEDAMHKPGLWHHQTE----VSGTQTTAQLNLSPYVNY   87 (127)
T ss_dssp             CSC-CCCEEEEEECCSSSCEEEEEECCCCC--SSCEEEEEEEEEBTTTCTTCEEEEEE----EESSCCEEEECCCTTCEE
T ss_pred             ccC-cCCCCcEEEEecCCeEEEEEeCCccc--ccceEeeeeeeccccccceeEEEEee----cCCceEEEECCCccCCEE
Confidence            345 58999999999999999999988765  67889999999876654433222221    225567889999999999


Q ss_pred             EEEEEEEeCCCCCCCCcce-eeeccCCCCCCCCCCcE
Q psy3718         326 SVVVQALNKLGPGPMSEEV-KQYTAEGTPEQPPQDNT  361 (543)
Q Consensus       326 ~~~V~a~n~~G~s~~s~~~-~~~t~~~~p~~~P~~~~  361 (543)
                      .|+|+|+|..|.|.++... .++|.+..|..+|.++.
T Consensus        88 ~frV~A~n~~G~s~~S~~s~~~~t~~~~P~~~P~~~p  124 (127)
T d1ueya_          88 SFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSGP  124 (127)
T ss_dssp             CCEEEEEESSCBCCCCSCCCCEECCCSSCSSCSSCCC
T ss_pred             EEEEEEEcCCcCcCCcCCcccEEcCCCCCCCCCCCCC
Confidence            9999999999999888764 46778888877887653

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.1e-12  Score=113.18  Aligned_cols=85  Identities=14%  Similarity=0.184  Sum_probs=44.9

Q ss_pred             CCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEE
Q psy3718         249 SGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVV  328 (543)
Q Consensus       249 ~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~  328 (543)
                      |++|.++.+...++++|.|+|.+|...  ++.+.+|.|.|+.........           .........+.+.+.|.++
T Consensus         3 Ps~P~~~~~~~~s~~si~vsW~pP~~~--ng~i~~Y~V~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~y~~~   69 (196)
T d2dtge2           3 PSVPLDPISVSNSSSQIILKWKPPSDP--NGNITHYLVFWERQAEDSELF-----------ELDYCLKGLKLPSRTWSPP   69 (196)
T ss_dssp             CCCCEEEEEEECSSSCEEEEEECCCCS--SSSCSEEECCEEEECCCCSCT-----------TCSSSCSCCCCCC------
T ss_pred             CcCCcCCEEEeccCCEEEEEEECCCCC--CCcEEEEEEEEEcCCCCCcee-----------EEeeEEeccccceeEEEEE
Confidence            458999999999999999999998765  788999999998766543210           1112233457788999999


Q ss_pred             EEEEeCCCCCCCCcceee
Q psy3718         329 VQALNKLGPGPMSEEVKQ  346 (543)
Q Consensus       329 V~a~n~~G~s~~s~~~~~  346 (543)
                      +.+.+..|.+..+.....
T Consensus        70 v~~~~~~~~~~~~~~~~~   87 (196)
T d2dtge2          70 FESEDSQKHNQSEYEDSA   87 (196)
T ss_dssp             ------------------
T ss_pred             EEEEcCCccccCcCCccc
Confidence            999998887655543333

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=5.7e-12  Score=94.62  Aligned_cols=94  Identities=22%  Similarity=0.282  Sum_probs=73.5

Q ss_pred             CCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEE
Q psy3718         250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVV  329 (543)
Q Consensus       250 ~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V  329 (543)
                      .+|.++++...+.+++.|.|.+|.... +..+..|.++++..+..... ....     .....++.+.+|.|++.|.|+|
T Consensus         2 ~~P~~~~v~~~~~~si~l~W~~p~~~~-~~~~~~y~~~~~~~~~~~~~-~~~~-----~~~~~~~~v~~L~p~t~Y~~rV   74 (96)
T d1x5xa1           2 SMPASPVLTKAGITWLSLQWSKPSGTP-SDEGISYILEMEEETSGYGF-KPKY-----DGEDLAYTVKNLRRSTKYKFKV   74 (96)
T ss_dssp             CCCCCCEEEEECSSEEEEECCCCSSCC-SSSSCEEEEEECCSSSSCCC-EEEE-----EESCSEEEEESCCSSCEEEEEE
T ss_pred             ccCCCCEEEEecCCEEEEEEEeecccC-cceEeeeEEEeeeccceeee-EEee-----cCCCCEEEECCCCCCCEEEEEE
Confidence            467788888899999999999987652 45677788877665544322 2222     2356789999999999999999


Q ss_pred             EEEeCCCCCCCCcceeeeccC
Q psy3718         330 QALNKLGPGPMSEEVKQYTAE  350 (543)
Q Consensus       330 ~a~n~~G~s~~s~~~~~~t~~  350 (543)
                      +|+|..|.|++|+.+.++|.+
T Consensus        75 ~A~n~~G~s~~S~~~~~~T~p   95 (96)
T d1x5xa1          75 IAYNSEGKSNPSEVVEFTTCP   95 (96)
T ss_dssp             EEECSSCEEEECCCEEEECCC
T ss_pred             EEEcCCcEeCCCCCEEEEeCc
Confidence            999999999999999988854

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4.5e-13  Score=102.68  Aligned_cols=89  Identities=13%  Similarity=0.184  Sum_probs=62.1

Q ss_pred             CeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCC--CceeeEEEEeeecCCCccEE
Q psy3718          52 PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPN--GVLSDLSIKRTERGDSALFT  129 (543)
Q Consensus        52 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~D~G~Y~  129 (543)
                      +.+...+..+.+.+|++++|.|.+.|.|.|.+.|+|++..+.................  ...++|.|.+++.+|+|.|+
T Consensus         5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (105)
T d1nbqa1           5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYT   84 (105)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEE
T ss_pred             eEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEE
Confidence            4445556678899999999999999999999999998765432111111110000000  01137999999999999999


Q ss_pred             EEEecccceee
Q psy3718         130 CEIKSQKISSQ  140 (543)
Q Consensus       130 C~a~n~~~sv~  140 (543)
                      |.|.|..|...
T Consensus        85 C~a~n~~G~~~   95 (105)
T d1nbqa1          85 CMVSEEGGNSY   95 (105)
T ss_dssp             EEEEETTSSCE
T ss_pred             EEEEECCCCEE
Confidence            99999988743

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=6.3e-12  Score=95.69  Aligned_cols=95  Identities=24%  Similarity=0.398  Sum_probs=73.8

Q ss_pred             CCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEE
Q psy3718         247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYS  326 (543)
Q Consensus       247 ~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  326 (543)
                      +| ++|.++++...+++++.|+|.++...  ++.+.+|.|.|+.......................++.+.+|+|++.|.
T Consensus         2 ~P-~~P~~~~~~~~~~~sv~v~W~~P~~~--~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~   78 (103)
T d1qg3a2           2 VP-SEPGRLAFNVVSSTVTQLSWAEPAET--NGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYR   78 (103)
T ss_dssp             CC-CCCCCCEEEEEETTEEEEECCCCSCC--SSCCCEEEEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECCCCTTCCEE
T ss_pred             cC-ccCCCcEEEEecCCEEEEEEEECccC--CCCceEEEEEeeccccccccccceEEEEecCCCceEEEEeecCCCCEEE
Confidence            34 58999999999999999999998776  7899999999987754332111111111224566899999999999999


Q ss_pred             EEEEEEeCCCCCCCCcce
Q psy3718         327 VVVQALNKLGPGPMSEEV  344 (543)
Q Consensus       327 ~~V~a~n~~G~s~~s~~~  344 (543)
                      |+|+|+|..|.|+++...
T Consensus        79 ~~V~A~n~~G~g~~s~~~   96 (103)
T d1qg3a2          79 YTVKARNGAGWGPEREAI   96 (103)
T ss_dssp             EEEEEEETTEECCCEEEE
T ss_pred             EEEEEEcCCccCCCcccc
Confidence            999999999999877544

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=7.1e-12  Score=94.85  Aligned_cols=97  Identities=16%  Similarity=0.231  Sum_probs=77.1

Q ss_pred             CCCCCeeeEEEecCCCeEEEEeeCCCCC--CCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEE
Q psy3718         248 PSGPPTHIKVEATDQNTLKVSWSPPERD--HWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQY  325 (543)
Q Consensus       248 p~~~P~~~~~~~~~~~~i~l~W~~~~~~--~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y  325 (543)
                      |..+|.++.+...+++++.|+|+++...  .....+..|.|.|+..+..... ....     ......+.|.+|.|++.|
T Consensus         1 P~~pP~~v~~~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~~-~~~~-----~~~~~~~~i~~L~p~t~Y   74 (100)
T d1x5ja1           1 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTK-YKNA-----NATTLSYLVTGLKPNTLY   74 (100)
T ss_dssp             CCCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCC-CEEC-----CBCSSEEEEESCCTTCEE
T ss_pred             CCCCCcCeEEEEecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCcce-eEec-----CCCccEEEECCCCCCCEE
Confidence            4568999999999999999999987432  2235677899998776654432 2222     335578999999999999


Q ss_pred             EEEEEEEeCCCCCCCCcceeeeccC
Q psy3718         326 SVVVQALNKLGPGPMSEEVKQYTAE  350 (543)
Q Consensus       326 ~~~V~a~n~~G~s~~s~~~~~~t~~  350 (543)
                      .|+|+|.|..|.|++|..+.++|.+
T Consensus        75 ~~~V~a~n~~g~s~~S~~~~~~T~e   99 (100)
T d1x5ja1          75 EFSVMVTKGRRSSTWSMTAHGTTFE   99 (100)
T ss_dssp             CCEEEEECSSCBCCCCCCCCEECCC
T ss_pred             EEEEEEEeCCcCcCCCCeEEEEecc
Confidence            9999999999999999999988864

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.1e-12  Score=98.93  Aligned_cols=95  Identities=16%  Similarity=0.222  Sum_probs=64.1

Q ss_pred             eeeeccCCCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCC
Q psy3718         344 VKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITA  423 (543)
Q Consensus       344 ~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~  423 (543)
                      +.++|.+++|. +|.++++...+.+++.|.|++|                                           ...
T Consensus         2 v~v~T~e~vP~-~p~~l~~~~~~~~sv~l~W~~P-------------------------------------------~~~   37 (106)
T d1wfna1           2 QLVRTHEDVPG-PVGHLSFSEILDTSLKVSWQEP-------------------------------------------GEK   37 (106)
T ss_dssp             CSCCSSCCSCC-CCSCCEEESCCSSEEEEECCCC-------------------------------------------TTC
T ss_pred             EEEEcCCCCCc-CCCCcEEEEecCCEEEEEEECC-------------------------------------------CCC
Confidence            45678888886 8899999999999999999976                                           223


Q ss_pred             CcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcc
Q psy3718         424 NGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCK  500 (543)
Q Consensus       424 ~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~  500 (543)
                      ||.|.+|.|.|+..+.. .......   .......+.+.+|.|+ .|.|+|+|              .|..|.|+++.
T Consensus        38 ng~i~~Y~i~~~~~~~~-~~~~~~~---~~~~~~~~~i~~L~p~t~Y~~~V~A--------------~n~~G~g~~s~   97 (106)
T d1wfna1          38 NGILTGYRISWEEYNRT-NTRVTHY---LPNVTLEYRVTGLTALTTYTIEVAA--------------MTSKGQGQVSA   97 (106)
T ss_dssp             CSCCCEEEEEEEESSCG-GGCCCEE---ECSSCCEEEEESCCTTCEEEEEEEE--------------ECSSCEEEEEE
T ss_pred             CCcEEeEEEEEEECCCC-cceEEEe---cCCCeeEEEEccCCCCCEEEEEEEE--------------ECCCCCcCCcC
Confidence            44455555555444332 0011100   0022334556699999 99999999              99999997754

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.30  E-value=7.5e-12  Score=94.59  Aligned_cols=92  Identities=15%  Similarity=0.321  Sum_probs=71.6

Q ss_pred             CCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEE
Q psy3718         246 EAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQY  325 (543)
Q Consensus       246 ~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y  325 (543)
                      ++| .+|.++.+.. .++++.|+|.++.+.  ++++.+|.|+|+.......+......    .....++.+.+|.|++.|
T Consensus         4 dvP-~~P~~~~v~~-~~~sv~lsW~pp~~~--~~~i~~Y~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~L~p~t~Y   75 (100)
T d1cfba1           4 DVP-NAPKLTGITC-QADKAEIHWEQQGDN--RSPILHYTIQFNTSFTPASWDAAYEK----VPNTDSSFVVQMSPWANY   75 (100)
T ss_dssp             CCC-CCCEEEEEEE-CSSEEEEEEECCCCT--TSCCCEEEEEEEESSSTTCCEEEEEE----EETTCSEEEEECCSSEEE
T ss_pred             cCC-CcCcCcEEEE-cCCEEEEEEcCCccc--ccceEEEEEEEecCCCCceeeEEeee----cCCceEEEEecCCCCCEE
Confidence            445 5899999864 567899999988765  68899999999987665544333222    124467888999999999


Q ss_pred             EEEEEEEeCCCCCCCCccee
Q psy3718         326 SVVVQALNKLGPGPMSEEVK  345 (543)
Q Consensus       326 ~~~V~a~n~~G~s~~s~~~~  345 (543)
                      .|+|+|.|..|.|++|++..
T Consensus        76 ~frV~A~n~~G~g~~S~~s~   95 (100)
T d1cfba1          76 TFRVIAFNKIGASPPSAHSD   95 (100)
T ss_dssp             EEEEEEEETTEECCCCCCCC
T ss_pred             EEEEEEEeCCcCCCCcCCCc
Confidence            99999999999998887543

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=7.4e-12  Score=96.01  Aligned_cols=95  Identities=20%  Similarity=0.237  Sum_probs=75.1

Q ss_pred             CCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEE
Q psy3718         248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSV  327 (543)
Q Consensus       248 p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~  327 (543)
                      .+.||+++.+. .+.++|.|+|.++...  ++++.+|.|+|+..+.........+     ......+.+.+|.|++.|.|
T Consensus         7 ~~sPP~~~~~~-~t~~si~l~W~pp~~~--~~~i~~Y~v~~~~~~~~~~~~~~~~-----~~~~~~~~i~~L~p~t~Y~~   78 (108)
T d1v5ja_           7 GLSPPRGLVAV-RTPRGVLLHWDPPELV--PKRLDGYVLEGRQGSQGWEVLDPAV-----AGTETELLVPGLIKDVLYEF   78 (108)
T ss_dssp             CCCCCEEEEEE-ECSSSEEEEEECCSCC--SSCCCBEEEEEEETTCCCEEEEEEE-----CSSCCEEECCCCCTTSCEEC
T ss_pred             CCCcCCCeEEE-EcCCEEEEEEEecccC--CCceeEEEEEeeeeeeeeeeccccc-----cceeeeEEEEeccCCcEEEE
Confidence            34589999875 4778999999998765  6789999999987654321111111     45678999999999999999


Q ss_pred             EEEEEeCCCCCCCCcceeeeccC
Q psy3718         328 VVQALNKLGPGPMSEEVKQYTAE  350 (543)
Q Consensus       328 ~V~a~n~~G~s~~s~~~~~~t~~  350 (543)
                      +|+|+|..|.|++++.+.++|..
T Consensus        79 rV~A~n~~g~s~~S~~~~~~T~~  101 (108)
T d1v5ja_          79 RLVAFAGSFVSDPSNTANVSTSG  101 (108)
T ss_dssp             CBEEEETTEEEEECSCCCCCCSS
T ss_pred             EEEEEeCCCEeCCcCceEEECCC
Confidence            99999999999999988888754

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6.6e-12  Score=96.75  Aligned_cols=103  Identities=26%  Similarity=0.348  Sum_probs=70.2

Q ss_pred             eccCCCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcc
Q psy3718         347 YTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGV  426 (543)
Q Consensus       347 ~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~  426 (543)
                      .|.+++|..||.++++...+.+++.|.|.+|+....++.+.+|.|.|+..+                             
T Consensus         2 ~T~~~~P~~pP~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~-----------------------------   52 (109)
T d1va9a1           2 STEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENS-----------------------------   52 (109)
T ss_dssp             CSSCCCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESS-----------------------------
T ss_pred             CCcCCCCCCCCcCcEEEEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeecc-----------------------------
Confidence            577888988999999999999999999998865555666666666665432                             


Q ss_pred             eeEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcccccc
Q psy3718         427 IKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDRV  504 (543)
Q Consensus       427 i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~v  504 (543)
                                  ....................+.+.+|+|+ .|.|+|+|              .|..|.|++|....+
T Consensus        53 ------------~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a--------------~n~~G~g~~S~~v~~  105 (109)
T d1va9a1          53 ------------PGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQA--------------FNRAGTGPSSSEINA  105 (109)
T ss_dssp             ------------TTSCCSCBCCBCCCCSSEEEEEEESCCSSCCEEEEEEE--------------EETTEECCCCCCEEC
T ss_pred             ------------ccccceeeeeEEecCCCeeEEEECCCCcceEEEEEEEE--------------EcCCcCCCCCCCEEE
Confidence                        11000000000000012233455599999 99999999              999999988765554

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=5.8e-12  Score=94.53  Aligned_cols=88  Identities=22%  Similarity=0.206  Sum_probs=58.4

Q ss_pred             CCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEE
Q psy3718         353 PEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKV  432 (543)
Q Consensus       353 p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i  432 (543)
                      |+.+|.++.+...+++++.|+|.+|. .+.++                                         .|++|.|
T Consensus         1 PP~~P~~~~v~~~~~~sv~l~W~pP~-~~~~~-----------------------------------------~i~~Y~V   38 (98)
T d1x5ya1           1 PTSAPQHLTVEDVTDTTTTLKWRPPD-RIGAG-----------------------------------------GIDGYLV   38 (98)
T ss_dssp             CCCCCEEEEEEEECSSEEEEEEECCS-CCCSS-----------------------------------------CCCEEEE
T ss_pred             CCCCCcCcEEEEccCCEEEEEEECCC-cCCCC-----------------------------------------CceEEEE
Confidence            44588999999999999999999762 12222                                         4455555


Q ss_pred             EEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcc
Q psy3718         433 VYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCK  500 (543)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~  500 (543)
                      +|+..+..  .+....  ........+.+++|.|+ .|.|+|+|              .|..|.|+++.
T Consensus        39 ~~~~~~~~--~~~~~~--~~~~~~~~~~v~~L~~~~~Y~frV~A--------------~n~~G~s~~s~   89 (98)
T d1x5ya1          39 EYCLEGSE--EWVPAN--KEPVERCGFTVKDLPTGARILFRVVG--------------VNIAGRSEPAT   89 (98)
T ss_dssp             EEEETTCC--CCEESS--SSCBSSSEEEEECCCTTCCEEEEEEE--------------EETTEECCCCC
T ss_pred             EEEecCcc--eeEEee--eecCceeEEEECCCcCCeEEEEEEEE--------------ECCCcCCCCcC
Confidence            55544432  111110  00133445666799999 99999999              99999998864

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=1.2e-12  Score=99.49  Aligned_cols=88  Identities=13%  Similarity=0.134  Sum_probs=61.5

Q ss_pred             CeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecC--CCceeeEEEEeeecCCCccEE
Q psy3718          52 PEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILP--NGVLSDLSIKRTERGDSALFT  129 (543)
Q Consensus        52 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~  129 (543)
                      |.+...+.++.+.+|+++.|.|.+.|.|.|.|.|++++..+................  ....++|.|.++..+|+|.|+
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~   81 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT   81 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEE
Confidence            566667788999999999999999999999999998654331110000000000000  001236999999999999999


Q ss_pred             EEEeccccee
Q psy3718         130 CEIKSQKISS  139 (543)
Q Consensus       130 C~a~n~~~sv  139 (543)
                      |.|.|..|..
T Consensus        82 C~a~n~~g~~   91 (102)
T d1f97a1          82 CMVSEEGGQN   91 (102)
T ss_dssp             EEEEETTSSS
T ss_pred             EEEEECCCCE
Confidence            9999987763

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.6e-11  Score=89.54  Aligned_cols=82  Identities=18%  Similarity=0.254  Sum_probs=68.9

Q ss_pred             CCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEE
Q psy3718         250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVV  329 (543)
Q Consensus       250 ~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V  329 (543)
                      .+|.++++..++.+++.|+|.++     .+.+.+|.|.|+..+.........+     ..+..++.|.+|.|++.|.|+|
T Consensus         3 d~P~~l~v~~~s~~s~~l~W~~p-----~~~~~~y~v~~~~~~~~~~~~~~~~-----~~~~~~~~i~~L~p~t~Y~~~V   72 (90)
T d1tena_           3 DAPSQIEVKDVTDTTALITWFKP-----LAEIDGIELTYGIKDVPGDRTTIDL-----TEDENQYSIGNLKPDTEYEVSL   72 (90)
T ss_dssp             CCCEEEEEESCCSSCEEEEEECC-----SSCCSEEEEEEEETTCTTCCEEEEE-----ETTCCEEEECSCCTTCEEEEEE
T ss_pred             CCCCCcEEEEecCCEEEEEEEeC-----ceEeccEEEEEEEcCCCceeEEEEe-----cCCcceeeEeeecCCCEEEEEE
Confidence            57899999999999999999987     4568899999998876554433333     4577899999999999999999


Q ss_pred             EEEeCCCCCCCC
Q psy3718         330 QALNKLGPGPMS  341 (543)
Q Consensus       330 ~a~n~~G~s~~s  341 (543)
                      +|+|..|.|+++
T Consensus        73 ~a~~~~g~s~~~   84 (90)
T d1tena_          73 ISRRGDMSSNPA   84 (90)
T ss_dssp             EEEETTEECCCE
T ss_pred             EEEeCCCEeCCE
Confidence            999999988654

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.7e-11  Score=92.72  Aligned_cols=98  Identities=27%  Similarity=0.281  Sum_probs=73.2

Q ss_pred             CCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEE
Q psy3718         247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYS  326 (543)
Q Consensus       247 ~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  326 (543)
                      +| ++|..+.+ ...++++.|.|.+|.... +.+|.+|.|+|+..+...+.... ... ........+.+.+|.|++.|.
T Consensus         2 vP-~~P~~~~~-~~~~~sv~l~W~~P~~~g-g~~I~~Y~v~~~~~~~~~~~~~~-~~~-~~~~~~~~~~i~~L~p~t~Y~   76 (101)
T d2haza1           2 TP-SSPSIDQV-EPYSSTAQVQFDEPEATG-GVPILKYKAEWRAVGEEVWHSKW-YDA-KEASMEGIVTIVGLKPETTYA   76 (101)
T ss_dssp             CC-CCCEEEEE-EECSSCEEEEEECCSCCT-TSCCCEEEEEEEETTCCCCEEEE-EEH-HHHHHHSEEEECSCCTTCEEE
T ss_pred             cC-cCCccCEE-EeeCCEEEEEEeCCCcCc-cccEEEEEEEEeecCCcceeeee-eee-ecccceeEEEecCCCCCeEEE
Confidence            44 47765555 456788999999986652 45799999999987765432221 111 112345689999999999999


Q ss_pred             EEEEEEeCCCCCCCCcceeeecc
Q psy3718         327 VVVQALNKLGPGPMSEEVKQYTA  349 (543)
Q Consensus       327 ~~V~a~n~~G~s~~s~~~~~~t~  349 (543)
                      |+|+|.|..|.|++|....++|.
T Consensus        77 frV~A~N~~G~g~~S~~~~~~T~   99 (101)
T d2haza1          77 VRLAALNGKGLGEISAASEFKTQ   99 (101)
T ss_dssp             EEEEEEETTEECCCCCCEEEECC
T ss_pred             EEEEEEeCCcCcCCCCceeEEeC
Confidence            99999999999999999988875

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=3.2e-12  Score=100.32  Aligned_cols=103  Identities=14%  Similarity=0.190  Sum_probs=75.6

Q ss_pred             CCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCC-CCCceEEEEeeeccCCceeEEEECCCCCCCE
Q psy3718         246 EAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETST-DKPFLFETVDFSKEEGKEHHLTLSSLKTYTQ  324 (543)
Q Consensus       246 ~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~  324 (543)
                      ..|+.+|..+.+..+++++|.|.|++|.... +..+..|.|+|+.... .....+..+.    .+...+|.+.+|+|++.
T Consensus        13 ~~pp~~P~~p~v~~vt~~sv~l~W~~P~~~~-g~~i~~y~i~y~~~~~~~~~~~~~~~~----~~~~~~~~v~~L~p~t~   87 (120)
T d1wfua_          13 VVPLSKPHPPVVGKVTHHSIELYWDLEQKEK-RQGPQEQWLRFSIEEEDPKMHSYGVIY----TGYATRHVVEGLEPRTL   87 (120)
T ss_dssp             CCCCCCCCCCBCCCEETTEEEEECTTTSCSC-CCSCGGGCCEEEEEEECTTTCCEEEEE----EESCSEEEEESCCTTCE
T ss_pred             ccCCCcCCCCEEeEecCCEEEEEEECCcccC-cccccceeeeeeeecccccccceeeec----cccccEEeCCCCCCCcE
Confidence            3456677777888888999999999986643 3457777777764321 1222222221    23457899999999999


Q ss_pred             EEEEEEEEeCCCCCCCCcceeeeccCCCC
Q psy3718         325 YSVVVQALNKLGPGPMSEEVKQYTAEGTP  353 (543)
Q Consensus       325 Y~~~V~a~n~~G~s~~s~~~~~~t~~~~p  353 (543)
                      |.|+|+|+|..|.|++|+.+.++|....|
T Consensus        88 Y~frV~A~n~~G~s~~S~~~~~~T~~~~p  116 (120)
T d1wfua_          88 YKFRLKVTSPSGEYEYSPVVSVATTRESG  116 (120)
T ss_dssp             EEEEEEEECSSSCEEECCCEEEECCCCCC
T ss_pred             eeEEEEEEeCCcEeCCCCCEEEEeCCCCc
Confidence            99999999999999999999998865433

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.2e-12  Score=102.61  Aligned_cols=99  Identities=21%  Similarity=0.276  Sum_probs=70.3

Q ss_pred             eeeeccCCCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCC
Q psy3718         344 VKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITA  423 (543)
Q Consensus       344 ~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~  423 (543)
                      +.++|.+++|..+|.++++...+++++.|.|++|.....+|.|.+|.|+|+..+                          
T Consensus         2 v~v~T~~~~P~~~P~~v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~--------------------------   55 (119)
T d1x5ha1           2 VAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKAS--------------------------   55 (119)
T ss_dssp             CCCCCCCSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETT--------------------------
T ss_pred             EEEEcCCCCCCCCCcCeEEEEecCcEEEEEEEcccccCCCCCEEEEEEEEeecc--------------------------
Confidence            456788889988999999999999999999998866566677777777775432                          


Q ss_pred             CcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccc
Q psy3718         424 NGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKN  501 (543)
Q Consensus       424 ~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~  501 (543)
                                     .. .......   .......+.+.+|+|+ .|.|+|+|              .|..|.|.+|..
T Consensus        56 ---------------~~-~~~~~~~---~~~~~~~~~i~~L~p~t~Y~~~V~A--------------~n~~G~G~~S~~  101 (119)
T d1x5ha1          56 ---------------RK-SDVTETL---VSGTQLSQLIEGLDRGTEYNFRVAA--------------LTINGTGPATDW  101 (119)
T ss_dssp             ---------------EE-EEEECCB---CCTTCCEEEEECCCSSCEEEEECEE--------------EETTEEEEECCC
T ss_pred             ---------------cc-cceeeee---cCCCccEEEeCCCCCCCEEEEEEEE--------------EcCCcCCCCCCC
Confidence                           10 0000000   0022333455699999 99999999              999999976653

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.26  E-value=1.8e-11  Score=93.61  Aligned_cols=92  Identities=21%  Similarity=0.300  Sum_probs=65.7

Q ss_pred             CCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEee-------eccCCceeEEEECCCCCCC
Q psy3718         251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDF-------SKEEGKEHHLTLSSLKTYT  323 (543)
Q Consensus       251 ~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~L~p~t  323 (543)
                      ||..+.+..++.+++.|+|.++.+.  +++|.+|.|+|+..+....|.......       .........+++.+|+|++
T Consensus         2 PP~~p~v~~~~~~sv~l~W~~P~~~--g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t   79 (107)
T d2ic2a1           2 PPTPPNVTRLSDESVMLRWMVPRND--GLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQH   79 (107)
T ss_dssp             CCCCCEEEECC---EEEEEEEECCS--SCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSSE
T ss_pred             cCcCCEEEEEECCEEEEEEEeCccc--cCCceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECCCcCCc
Confidence            3445567888999999999999765  689999999998876655543332211       1113456789999999999


Q ss_pred             EEEEEEEEEeCCCCCCCCcce
Q psy3718         324 QYSVVVQALNKLGPGPMSEEV  344 (543)
Q Consensus       324 ~Y~~~V~a~n~~G~s~~s~~~  344 (543)
                      .|.|+|.|+|..|.|++|...
T Consensus        80 ~Y~frV~A~N~~G~s~~S~~s  100 (107)
T d2ic2a1          80 TYRFRILAVYSNNDNKESNTS  100 (107)
T ss_dssp             EEEEEEEEEETTSCEEECCCC
T ss_pred             EEEEEEEEEcCCCCCCCCCCC
Confidence            999999999999999877544

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.26  E-value=1e-11  Score=94.76  Aligned_cols=93  Identities=15%  Similarity=0.078  Sum_probs=62.5

Q ss_pred             CCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEE
Q psy3718         351 GTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGY  430 (543)
Q Consensus       351 ~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y  430 (543)
                      ++|..+|.++++...+.+++.|+|.+++....+|.+.+|.|.|                                     
T Consensus         2 ~~P~~~P~~v~~~~~~~~si~v~W~p~~~~~~ng~i~~Y~I~y-------------------------------------   44 (105)
T d1cfba2           2 DVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSW-------------------------------------   44 (105)
T ss_dssp             CCCSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEE-------------------------------------
T ss_pred             CCCCCCCcCeEEEEccCCeEEEEEeCCChhhcCceEEEEEEEe-------------------------------------
Confidence            5677789999999999999999999875444455555555555                                     


Q ss_pred             EEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccc
Q psy3718         431 KVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKN  501 (543)
Q Consensus       431 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~  501 (543)
                          +..+.. ......  .........+.+.+|+|+ .|.|+|+|              .|.+|.|.++..
T Consensus        45 ----~~~~~~-~~~~~~--~~~~~~~~~~~i~~L~p~t~Y~~~V~A--------------~N~~G~gp~S~~   95 (105)
T d1cfba2          45 ----KRDIPA-AAWENN--NIFDWRQNNIVIADQPTFVKYLIKVVA--------------INDRGESNVAAE   95 (105)
T ss_dssp             ----EESSTT-CCCEEE--EECCTTCCEEEECSCCSSCEEEEEEEE--------------EETTEECSSCCC
T ss_pred             ----eeeccc-cceeEE--EecCCCccEEEECCCCCCCEEEEEEEE--------------EeCCcCCCCCCC
Confidence                433321 111100  000123334556699999 99999999              999999987654

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.1e-12  Score=100.61  Aligned_cols=110  Identities=20%  Similarity=0.261  Sum_probs=79.0

Q ss_pred             EeccCCCCCCCCeeeEEEe-cCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCC
Q psy3718         241 ILTAEEAPSGPPTHIKVEA-TDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSL  319 (543)
Q Consensus       241 ~~t~~~~p~~~P~~~~~~~-~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L  319 (543)
                      +.|.+..|+.+|.++.+.. .+++++.|+|.++.....++....|.+.|+....... ..   .......+...+.|.+|
T Consensus         3 ~~T~~~~pp~pP~~v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~~~~~-~~---~~~~~~~~~~~~~i~~L   78 (117)
T d2cspa1           3 FSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQR-VA---EVIFPTADSTAVELVRL   78 (117)
T ss_dssp             CCCCCCCCCCCCEEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEESSSSE-EE---EECCTTCSEEEEESHHH
T ss_pred             EEeCCCCCCCCCCccEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEeeccc-ce---eeeeeccceeeeeccCC
Confidence            4567778888999999865 5667999999998654323333334444443332221 11   12223456778999999


Q ss_pred             CCCCEEEEEEEEEeCCCCCCCCcceeeeccCCCCC
Q psy3718         320 KTYTQYSVVVQALNKLGPGPMSEEVKQYTAEGTPE  354 (543)
Q Consensus       320 ~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t~~~~p~  354 (543)
                      ++++.|.|+|+|+|..|.|+.|..+.+.|...+|.
T Consensus        79 ~~~t~Y~v~V~A~n~~G~s~~S~~v~i~t~~~vP~  113 (117)
T d2cspa1          79 RSLEAKGVTVRTLSAQGESVDSAVAAVPPELLVPP  113 (117)
T ss_dssp             HHHTCSCBEEEEEESSCCCCCCSCBCCCHHHHSCC
T ss_pred             CCCcEEEEEEEEEcCCCcCCCCCCEEeeCCCCCCc
Confidence            99999999999999999999999999988877775

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=6.5e-12  Score=93.41  Aligned_cols=82  Identities=15%  Similarity=0.156  Sum_probs=55.3

Q ss_pred             CCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEe
Q psy3718         356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYG  435 (543)
Q Consensus       356 ~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~  435 (543)
                      +|.++.+...+.+++.|.|.+|                                           .+.+++|.+|.|+|+
T Consensus         3 ~P~~~~~~~~~~~sv~l~W~~p-------------------------------------------~~~~~~I~~Y~i~~~   39 (93)
T d2vkwa2           3 APKLEGQMGEDGNSIKVNLIKQ-------------------------------------------DDGGSPIRHYLVRYR   39 (93)
T ss_dssp             CCEEEEEECTTSSCEEEEEECC-------------------------------------------CCTTSCCCEEEEEEE
T ss_pred             CCccCEeEEcCCCEEEEEeeCC-------------------------------------------CCCcCceEEEEEEee
Confidence            6788888778888888888876                                           223445555555555


Q ss_pred             eCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCc
Q psy3718         436 PSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKC  499 (543)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~  499 (543)
                      ..++.+.......     .....+.+.+|+|+ .|.|+|+|              .|.+|.|+++
T Consensus        40 ~~~~~~~~~~~~~-----~~~~~~~i~~L~p~t~Y~~~V~A--------------~N~~G~s~ps   85 (93)
T d2vkwa2          40 ALSSEWKPEIRLP-----SGSDHVMLKSLDWNAEYEVYVVA--------------ENQQGKSKAA   85 (93)
T ss_dssp             ETTSCCCCCEEEC-----TTCCEEEECSCCTTCEEEEEEEE--------------EETTEECCCE
T ss_pred             ecCcceeeeeecc-----CCceEEEEeccccceEEEEEEEE--------------EcCCCCcCCE
Confidence            5444311111111     33344555699999 99999999              9999999875

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=4.9e-11  Score=88.49  Aligned_cols=90  Identities=20%  Similarity=0.273  Sum_probs=71.1

Q ss_pred             CCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEE
Q psy3718         250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVV  329 (543)
Q Consensus       250 ~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V  329 (543)
                      .+|.++++...+.+++.|+|.++     .+.+.+|.|.|+..+..........   .......++.|.+|.|++.|.|+|
T Consensus         2 daP~~l~v~~~~~~sv~v~W~~p-----~~~~~~y~v~y~~~~~~~~~~~~~~---~~~~~~~~~~i~~L~p~t~Y~~~V   73 (92)
T d1tdqa2           2 DAPKNLRVGSRTATSLDLEWDNS-----EAEAQEYKVVYSTLAGEQYHEVLVP---KGIGPTTKTTLTDLVPGTEYGVGI   73 (92)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECC-----SSCCSEEEEEEEETTCCCCEEEEEE---CCSSSEEEEEECSCCTTCEEEEEE
T ss_pred             ccCcCCEEEEecCCEEEEEEEec-----CCcccceEEEEEEcCCCcceeeEEE---ecCCCeeEEEECCccCCCEEEEEE
Confidence            47889999999999999999998     4568899999998776544322222   225577899999999999999999


Q ss_pred             EEEeCCCCCCCCcceeeec
Q psy3718         330 QALNKLGPGPMSEEVKQYT  348 (543)
Q Consensus       330 ~a~n~~G~s~~s~~~~~~t  348 (543)
                      .|+|..|.|.++ .+.+.|
T Consensus        74 ~a~~~~g~s~p~-~~~~~T   91 (92)
T d1tdqa2          74 SAVMNSKQSIPA-TMNART   91 (92)
T ss_dssp             EEEETTEECCCE-EEEEEC
T ss_pred             EEEeCCCEecCE-EEEEEC
Confidence            999999988655 344443

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.4e-12  Score=96.27  Aligned_cols=71  Identities=21%  Similarity=0.453  Sum_probs=57.8

Q ss_pred             ceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccce
Q psy3718          59 RNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS  138 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s  138 (543)
                      .+..+.+|+++.|.|.+.| |.|.+.|+++|.++... ..++.+.    .++   +|.|.++.++|+|.|+|.|.|..+.
T Consensus         5 ~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~-~~~~~~~----~~~---~L~I~~v~~~DsG~Y~C~A~n~~g~   75 (92)
T d1olza1           5 RQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAE-SPKYGLM----GRK---NLLIFNLSEGDSGVYQCLSEERVKN   75 (92)
T ss_dssp             EEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCC-SSSBCCT----TTT---CEEECSCCGGGCEEEEEEEEEECSS
T ss_pred             hheeEeCCCEEEEEEEeec-cCCceeeecCcccceee-eeeeecc----eee---EEEECCCCHHHCcEEEEEEEEcCCC
Confidence            4578999999999999998 66899999999998654 3344332    233   6999999999999999999997654

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=9.9e-12  Score=94.73  Aligned_cols=94  Identities=23%  Similarity=0.295  Sum_probs=72.4

Q ss_pred             CCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEE
Q psy3718         248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSV  327 (543)
Q Consensus       248 p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~  327 (543)
                      |+.+|.++.+..++.++|.|+|.+|.... +..+..|.++++......+....     ........+.+.+|.|++.|.|
T Consensus         2 Pp~pP~~p~~~~~t~~sv~lsW~~P~~~~-g~~i~~y~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~L~p~t~Y~f   75 (104)
T d1bpva_           2 PIDPPGKPVPLNITRHTVTLKWAKPEYTG-GFKITSYIVEKRDLPNGRWLKAN-----FSNILENEFTVSGLTEDAAYEF   75 (104)
T ss_dssp             CCCCCCCCEEEEEETTEEEEECCCCSCCT-TCCCSCCEEEEEETTSCCCEECC-----CSCCCSSEEEECSCCSSCCEEE
T ss_pred             CCCCCCCCEEEEecCCEEEEEEEeccccC-cceEEEEEEEeecccccceeEEE-----eeccceeEEEEcCCCCCCEEEE
Confidence            56788888888889999999999886543 45789999999887665432211     1244667899999999999999


Q ss_pred             EEEEEeCCCC-CCCCcceeee
Q psy3718         328 VVQALNKLGP-GPMSEEVKQY  347 (543)
Q Consensus       328 ~V~a~n~~G~-s~~s~~~~~~  347 (543)
                      +|+|+|..|. |++|......
T Consensus        76 rV~A~n~~G~~s~~S~~s~~v   96 (104)
T d1bpva_          76 RVIAKNAAGAISPPSEPSDAI   96 (104)
T ss_dssp             EEEEECTTSCEEEEEEEEEEE
T ss_pred             EEEEEECCCCCCCCcCCCCCE
Confidence            9999999996 6666655433

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.9e-11  Score=89.05  Aligned_cols=81  Identities=26%  Similarity=0.397  Sum_probs=67.1

Q ss_pred             CCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEE
Q psy3718         250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVV  329 (543)
Q Consensus       250 ~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V  329 (543)
                      .+|.++++..++.+++.|+|.++     .+.+.+|.|.|+..+.........+     +....++.|.+|.|++.|.|+|
T Consensus         2 d~P~~l~v~~vt~~sv~l~W~~p-----~~~~~~Y~i~~~~~~~~~~~~~~~v-----~~~~~~~~i~~L~p~t~Y~~~V   71 (89)
T d1fnfa3           2 DSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHHPEHFSGRPREDRV-----PHSRNSITLTNLTPGTEYVVSI   71 (89)
T ss_dssp             CCCEEEEEESCCSSEEEEEEECC-----SSCCSEEEEEEECSCCSSCCEEEEE-----ETTCCEEEEESCCTTCEEEEEE
T ss_pred             ccCcCCEEEEecCCEEEEEEEeC-----CCEEeeEEEEEEECCCCCceEEEEE-----CCCccEEEECCCcccCEEEEEE
Confidence            47899999999999999999997     3567899999988766554433333     4567899999999999999999


Q ss_pred             EEEeCCCCCCC
Q psy3718         330 QALNKLGPGPM  340 (543)
Q Consensus       330 ~a~n~~G~s~~  340 (543)
                      .|+|..|.|++
T Consensus        72 ~a~~~~g~s~p   82 (89)
T d1fnfa3          72 VALNGREESPL   82 (89)
T ss_dssp             EEEETTEECCC
T ss_pred             EEEcCCcCcCC
Confidence            99999987753

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=5.4e-12  Score=94.84  Aligned_cols=91  Identities=16%  Similarity=0.199  Sum_probs=61.2

Q ss_pred             CCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEE
Q psy3718         351 GTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGY  430 (543)
Q Consensus       351 ~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y  430 (543)
                      ++|. +|.++++...+.+++.|.|.+|                                           ...+|.|.+|
T Consensus         2 a~P~-~p~~~~~~~~s~~si~v~W~~P-------------------------------------------~~~~g~i~~Y   37 (98)
T d1x5la1           2 AAPS-QVVVIRQERAGQTSVSLLWQEP-------------------------------------------EQPNGIILEY   37 (98)
T ss_dssp             CCCC-CCCCEECSCBCSSCEEEEECCC-------------------------------------------SCCCSCCCEE
T ss_pred             cCCC-CCCceEEEeccCCEEEEEEECC-------------------------------------------CCCCCCEEEE
Confidence            3454 7788888888999999999976                                           2224445555


Q ss_pred             EEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcccccc
Q psy3718         431 KVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDRV  504 (543)
Q Consensus       431 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~v  504 (543)
                      +|+|+..+..........     .....+.+.+|.|+ .|.|+|+|              .|.+|.|.+|....+
T Consensus        38 ~v~y~~~~~~~~~~~~~~-----~~~~~~~i~~L~p~t~Y~~~V~a--------------~n~~G~g~~S~~v~~   93 (98)
T d1x5la1          38 EIKYYEKDKEMQSYSTLK-----AVTTRATVSGLKPGTRYVFQVRA--------------RTSAGCGRFSQAMEV   93 (98)
T ss_dssp             EEEEEESSSCCSSCEEEE-----ESSSEEEECSCCTTCEEEECEEE--------------EETTEECCCCCCEEE
T ss_pred             EEEeecccccceeeEEec-----CCceEEEECCCCCCCEEEEEEEE--------------EcCCCCcCCCCCEEE
Confidence            555554433211111111     34455667799999 99999999              999999988775543

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.1e-11  Score=94.67  Aligned_cols=95  Identities=14%  Similarity=0.239  Sum_probs=64.9

Q ss_pred             eeccCCCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCc
Q psy3718         346 QYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANG  425 (543)
Q Consensus       346 ~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g  425 (543)
                      ++|...+|. +|.++++...+.+++.|+|.+|.  ..++.|.+|.|+++                               
T Consensus         4 f~T~~~~P~-~P~~~~~~~~~~~sv~l~W~pp~--~~~~~i~~Y~i~~~-------------------------------   49 (105)
T d1x3da1           4 FTTLSCEPD-IPNPPRIANRTKNSLTLQWKAPS--DNGSKIQNFVLEWD-------------------------------   49 (105)
T ss_dssp             CCCCCSCCC-CCCCCEEEEEETTEEEEECCCCC--CCSSCEEEEEEEEC-------------------------------
T ss_pred             EECCCCCCc-CCCCCEEEEccCCEEEEEEECCC--CCcCccEEEEEEEe-------------------------------
Confidence            567766675 88999999999999999999872  33455555555553                               


Q ss_pred             ceeEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccccc
Q psy3718         426 VIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDR  503 (543)
Q Consensus       426 ~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~  503 (543)
                                ..+.. .....    ........+.+.+|.|+ .|.|+|+|              .|..|.|++|....
T Consensus        50 ----------~~~~~-~~~~~----~~~~~~~~~~~~~L~p~t~Y~frV~A--------------~N~~G~s~~S~~~~   99 (105)
T d1x3da1          50 ----------EGKGN-GEFCQ----CYMGSQKQFKITKLSPAMGCKFRLSA--------------RNDYGTSGFSEEVL   99 (105)
T ss_dssp             ----------TTTSS-SCCEE----EEEESCSEEEEESCCTTCEEEEECCE--------------EESSCBCCCCCCEE
T ss_pred             ----------cCCCc-ceeEE----EecCCccEEEecCCcCCcEEEEEEEE--------------ECCCeEcCCCCcEE
Confidence                      22221 00000    01133444566699999 99999999              99999999876544

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.23  E-value=8.5e-12  Score=90.71  Aligned_cols=71  Identities=14%  Similarity=0.261  Sum_probs=59.4

Q ss_pred             CeEEeecceeEeecCCCeEEEEEeeccCCc-eEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718          52 PEFEIKLRNQTSRRGEPSVLQCEAKGEKPI-GILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC  130 (543)
Q Consensus        52 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  130 (543)
                      |.+...|....+.+|++++|.|.+.+.|.+ .+.|++||..+....                ..|.|.++..+|+|.|+|
T Consensus         5 p~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~----------------~~l~i~~v~~~dsG~Y~C   68 (85)
T d2fcba1           5 AVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHT----------------QPSYRFKANNNDSGEYTC   68 (85)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCC----------------SSEEEEECCGGGCEEEEE
T ss_pred             CEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccccc----------------cceEEeeccccCCcEEEE
Confidence            567778888999999999999999998865 688999999885321                258899999999999999


Q ss_pred             EEecccce
Q psy3718         131 EIKSQKIS  138 (543)
Q Consensus       131 ~a~n~~~s  138 (543)
                      .|.|..++
T Consensus        69 ~a~ns~~S   76 (85)
T d2fcba1          69 QTGQTSLS   76 (85)
T ss_dssp             ECTTSBCC
T ss_pred             ECCCCccc
Confidence            99986443

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.8e-11  Score=89.07  Aligned_cols=82  Identities=17%  Similarity=0.308  Sum_probs=67.5

Q ss_pred             CCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEE
Q psy3718         251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQ  330 (543)
Q Consensus       251 ~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~  330 (543)
                      +|.++++..++.+++.|+|.++.    ++.+.+|.|.|+..+.........+     .....+|.|.+|.|++.|.|+|.
T Consensus         8 ~P~~l~v~~~t~~si~l~W~~p~----~~~i~~Y~v~~~~~~~~~~~~~~~~-----~~~~t~~~i~~L~p~t~Y~~~V~   78 (95)
T d2fnba_           8 QLTDLSFVDITDSSIGLRWTPLN----SSTIIGYRITVVAAGEGIPIFEDFV-----DSSVGYYTVTGLEPGIDYDISVI   78 (95)
T ss_dssp             CCTTCEEECCCSSCEEEECCCCC----CSSCCEEEEEEEEETSCCEEEEEEC-----CSSCSEEEECCCCTTSEEEEEEE
T ss_pred             cCCCeEEEEEcCCEEEEEEEecC----CceEEeEEEEEEEeeccceEEEEEe-----CCCCeEEEEecccCCEEEEEEEE
Confidence            68899999999999999999885    4568999999998776543222222     55778999999999999999999


Q ss_pred             EEeCCCCCCCC
Q psy3718         331 ALNKLGPGPMS  341 (543)
Q Consensus       331 a~n~~G~s~~s  341 (543)
                      |+|..|.|.++
T Consensus        79 a~~~~g~s~p~   89 (95)
T d2fnba_          79 TLINGGESAPT   89 (95)
T ss_dssp             EEETTEECCCC
T ss_pred             EEeCCcEeCCE
Confidence            99999988665

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4e-11  Score=89.32  Aligned_cols=90  Identities=28%  Similarity=0.455  Sum_probs=70.1

Q ss_pred             CCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEE
Q psy3718         250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVV  329 (543)
Q Consensus       250 ~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V  329 (543)
                      ++|. +.+...+.+++.|+|.+|...  ++.+.+|.|+|+..+.... ....+     .....++.+.+|.|++.|.|+|
T Consensus         2 ~~P~-~~~~~~~~~sv~l~W~pP~~~--~g~i~~Y~i~~~~~~~~~~-~~~~~-----~~~~~~~~i~~L~p~t~Y~~~V   72 (94)
T d2dn7a1           2 GRPT-MMISTTAMNTALLQWHPPKEL--PGELLGYRLQYCRADEARP-NTIDF-----GKDDQHFTVTGLHKGTTYIFRL   72 (94)
T ss_dssp             CCCE-EEEEECSTTEEEEEEECCSSC--SSCCCEEEEEEEETTCSSC-EEEEE-----ETTCCEEEEECCCTTCEEEEEE
T ss_pred             CCCc-EeEEEEeCCEEEEEEeCCCCC--CCceEEEEEEEEEcCCCCc-EEEEc-----CCCccEEEEEccCCeeEEEEEE
Confidence            4675 456667889999999998765  7899999999998775543 22222     3467889999999999999999


Q ss_pred             EEEeCCCCCCCCcceeeecc
Q psy3718         330 QALNKLGPGPMSEEVKQYTA  349 (543)
Q Consensus       330 ~a~n~~G~s~~s~~~~~~t~  349 (543)
                      +|+|..|.|+++.. .+.|.
T Consensus        73 ~A~n~~G~g~~s~~-~~~T~   91 (94)
T d2dn7a1          73 AAKNRAGLGEEFEK-EIRTP   91 (94)
T ss_dssp             EEEETTEEEEEEEE-EEECC
T ss_pred             EEEcCCcCCCCccE-EEeeC
Confidence            99999999987754 34443

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.9e-11  Score=88.26  Aligned_cols=88  Identities=17%  Similarity=0.323  Sum_probs=68.7

Q ss_pred             CCeeeEEEecC--CCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEE
Q psy3718         251 PPTHIKVEATD--QNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVV  328 (543)
Q Consensus       251 ~P~~~~~~~~~--~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~  328 (543)
                      +|.++.+....  ++++.|+|.+|.    .+.+.+|.|+|+..+....+....+     ++...++.|.+|+|++.|+|+
T Consensus         2 aP~~~~vt~~~~~~~s~~vsW~~P~----~~~i~~Y~i~y~~~~~~~~~~~~~v-----~~~~~~~~l~gL~P~t~Y~v~   72 (93)
T d1owwa_           2 GPVEVFITETPSQPNSHPIQWNAPQ----PSHISKYILRWRPKNSVGRWKEATI-----PGHLNSYTIKGLKPGVVYEGQ   72 (93)
T ss_dssp             CCCEEECCCCSSCTTCEEEEEECCS----SSCEEEEEEEEEETTCSSCCEEEEE-----CSSCCEEEECSCCSSEEEEEE
T ss_pred             cCcccEEEEccCCCCEEEEEeeccc----ccceeEEEEEEeeccccceeeeecc-----CCCccEEEECCcccCcEEEEE
Confidence            46677776654  479999999985    4579999999998776654433333     567889999999999999999


Q ss_pred             EEEEeCCCCCCCCcceeeec
Q psy3718         329 VQALNKLGPGPMSEEVKQYT  348 (543)
Q Consensus       329 V~a~n~~G~s~~s~~~~~~t  348 (543)
                      |.|+|..|.|..+. ..++|
T Consensus        73 v~av~~~G~s~~~~-~~~tT   91 (93)
T d1owwa_          73 LISIQQYGHQEVTR-FDFTT   91 (93)
T ss_dssp             EEEEESSSCEEEEE-EEEEE
T ss_pred             EEEEeCCCccCcEE-EEEEe
Confidence            99999999887653 55554

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=99.22  E-value=1.4e-10  Score=84.87  Aligned_cols=84  Identities=26%  Similarity=0.327  Sum_probs=67.5

Q ss_pred             CCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEE
Q psy3718         249 SGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVV  328 (543)
Q Consensus       249 ~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~  328 (543)
                      |.+|.++.+..++.+++.|+|+++.+   ++.+.+|.|.+..      .....       ....++.+.+|.|++.|.|+
T Consensus         4 P~~P~~l~~~~~~~~sv~lsW~~p~~---~~~i~~Y~i~~~~------~~~~~-------~~~t~~~~~~L~p~t~Y~~~   67 (88)
T d1k85a_           4 PTAPTNLASTAQTTSSITLSWTASTD---NVGVTGYDVYNGT------ALATT-------VTGTTATISGLAADTSYTFT   67 (88)
T ss_dssp             CCCCEEEEEEEECSSCEEEEEECCSC---CSSEEEEEEEESS------SEEEE-------ESSSEEEECCCCSSCEEEEE
T ss_pred             cCCCCCcEEEEecCCEEEEEEeCCCC---CCCEEEEEEEccc------eEEEe-------cCCCEEEECCCCCCCEEEEE
Confidence            46899999999999999999998865   3468899986521      11111       24578999999999999999


Q ss_pred             EEEEeCCC-CCCCCcceeeec
Q psy3718         329 VQALNKLG-PGPMSEEVKQYT  348 (543)
Q Consensus       329 V~a~n~~G-~s~~s~~~~~~t  348 (543)
                      |+|+|..| .|++|+.+.++|
T Consensus        68 V~A~n~~G~~s~~S~~v~vtT   88 (88)
T d1k85a_          68 VKAKDAAGNVSAASNAVSVKT   88 (88)
T ss_dssp             EEEEETTTEECCCCCCEEEEC
T ss_pred             EEEEECCCCcCCCCcCEEEEC
Confidence            99999999 688888887765

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=7.9e-11  Score=89.67  Aligned_cols=91  Identities=15%  Similarity=0.177  Sum_probs=66.3

Q ss_pred             CeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEE
Q psy3718         252 PTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQA  331 (543)
Q Consensus       252 P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a  331 (543)
                      |..+.+...+++++.|+|.++...  ++.+..|.|+|+.......+......    .+...++.|.+|.|++.|+|+|+|
T Consensus        10 P~~p~~~~~~~~~v~l~W~pp~~~--~~~~~~y~i~y~~~~~~~~~~~~~~~----~~~~~~~~i~~L~p~t~Y~frVra   83 (105)
T d2d9qb2          10 DPSPEAAPPQAGCLQLSWEPWQPG--LHINQKCELRHKPQRGEASWALVGPL----PLEALQYELCGLLPATAYTLQIRC   83 (105)
T ss_dssp             CC-------CCSCEEEEEECCGGG--TTSCEEEEEEEEESSSCCCCEEEEEE----CSCEEEEEECSCCSCCCEEEEEEE
T ss_pred             CCCCEeecCCCCeEEEEEcCCCCC--CceeEEEEEEEEecCCccceeeeecc----cCCcceeEEecccCCeEEEEEEEE
Confidence            445667777899999999998765  66889999999987766655444322    456788999999999999999999


Q ss_pred             EeCCCCCCCCc---ceeeec
Q psy3718         332 LNKLGPGPMSE---EVKQYT  348 (543)
Q Consensus       332 ~n~~G~s~~s~---~~~~~t  348 (543)
                      +|..|.|.+|+   .+.++|
T Consensus        84 ~n~~g~G~~S~wS~~~~~~t  103 (105)
T d2d9qb2          84 IRWPLPGHWSDWSPSLELRT  103 (105)
T ss_dssp             EECSSCCCCCCCCCCEEECC
T ss_pred             EeCCCCCCCcCCCCCEEEeC
Confidence            99999876555   444444

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.2e-11  Score=92.30  Aligned_cols=97  Identities=16%  Similarity=0.274  Sum_probs=74.3

Q ss_pred             CCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEE
Q psy3718         250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVV  329 (543)
Q Consensus       250 ~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V  329 (543)
                      .+|.++++..++++++.|+|.++     .+.+.+|.|.|+..+... + ...+     .+...++.|.+|.|++.|.|+|
T Consensus         2 ~~P~~l~~~~~t~~si~l~W~~p-----~~~i~~Y~v~~~~~~~~~-~-~~~~-----~~~~~~~~l~~L~p~t~Y~~~V   69 (102)
T d2cuha1           2 DGPTQLRALNLTEGFAVLHWKPP-----QNPVDTYDIQVTAPGAPP-L-QAET-----PGSAVDYPLHDLVLHTNYTATV   69 (102)
T ss_dssp             SSCEEEECCCCSSSCEEEEEECC-----SSCCSEEEEEEECSSSCC-E-EEEE-----ETTCSEEEECSCCSSSEEEEEE
T ss_pred             cCCCccEEEEeCCCEEEEEEEee-----eccceeeEEEEEeccccc-e-eeee-----eeeeeeEEEccEEeeEEEEEEE
Confidence            57899999999999999999987     356889999998765432 1 1122     3467799999999999999999


Q ss_pred             EEEeCCCCCCCCcceeeeccCCCCCCCCCCcEEE
Q psy3718         330 QALNKLGPGPMSEEVKQYTAEGTPEQPPQDNTCT  363 (543)
Q Consensus       330 ~a~n~~G~s~~s~~~~~~t~~~~p~~~P~~~~~~  363 (543)
                      +|++..|.|.++ ...++|...    +|.++.+.
T Consensus        70 ~a~~~~~~s~~~-~~~~~T~~~----~P~~l~~~   98 (102)
T d2cuha1          70 RGLRGPNLTSPA-SITFTTGLE----APRDLEAK   98 (102)
T ss_dssp             EEEETTEECCCE-EEEEESCCC----CTTTSSSC
T ss_pred             EEEeCCCCcCCE-EEEEECCCC----CCCCCEee
Confidence            999998888654 355666543    56666543

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.21  E-value=9.1e-12  Score=90.27  Aligned_cols=73  Identities=14%  Similarity=0.220  Sum_probs=59.7

Q ss_pred             CCCeEEeecceeEeecCCCeEEEEEeeccCCce-EEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccE
Q psy3718          50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIG-ILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALF  128 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~-i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y  128 (543)
                      .+|.+...|....+.+|++++|.|.+.|.|.+. +.|++++..+....                ..|.|.++..+|+|.|
T Consensus         4 Pkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~~----------------~~l~i~~~~~~d~G~Y   67 (84)
T d1fnla1           4 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA----------------SSYFIDAATVNDSGEY   67 (84)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSC----------------SEEEESSCCGGGCEEE
T ss_pred             CCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeecc----------------eeeEecCCcccCCEEE
Confidence            357888889999999999999999999998875 55788887763211                3699999999999999


Q ss_pred             EEEEecccce
Q psy3718         129 TCEIKSQKIS  138 (543)
Q Consensus       129 ~C~a~n~~~s  138 (543)
                      +|.|.|...|
T Consensus        68 ~C~a~~s~~S   77 (84)
T d1fnla1          68 RCQTNLSTLS   77 (84)
T ss_dssp             EEECSSSCCC
T ss_pred             EEEccCCCcc
Confidence            9999885433

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=8e-12  Score=94.38  Aligned_cols=80  Identities=14%  Similarity=0.217  Sum_probs=64.2

Q ss_pred             CCCeEEeecceeEeecCCCeEEEEEeec-cCCc--eEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCc
Q psy3718          50 APPEFEIKLRNQTSRRGEPSVLQCEAKG-EKPI--GILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSA  126 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p~~--~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G  126 (543)
                      .|+.+.+.|....+.+|++++|.|.+.| .|.+  ++.|++++..+.....         ......+.|.|..+..+|+|
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~---------~~~~~~s~l~i~~~~~dd~g   73 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---------VGEPAEVTTTVLVRRDHHGA   73 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC---------CTTTEEEEEEEECCSSCSSC
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc---------ccccceEEEEEeeehhHCCC
Confidence            5888888888889999999999999997 4544  6889999998842111         12234468999999999999


Q ss_pred             cEEEEEecccce
Q psy3718         127 LFTCEIKSQKIS  138 (543)
Q Consensus       127 ~Y~C~a~n~~~s  138 (543)
                      .|+|.|+|..|+
T Consensus        74 ~ytC~A~n~~g~   85 (103)
T d1iama1          74 QFSCRTELDLRP   85 (103)
T ss_dssp             EEEEEEEEECGG
T ss_pred             EEEEEEEeCCCC
Confidence            999999998765

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=8.1e-11  Score=87.01  Aligned_cols=80  Identities=20%  Similarity=0.437  Sum_probs=67.3

Q ss_pred             CCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEE
Q psy3718         251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQ  330 (543)
Q Consensus       251 ~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~  330 (543)
                      +|.++++...+.+++.|.|.++.    ++.+.+|.|+|+..+.........+     ......+.|.+|.|++.|.|+|+
T Consensus         3 pP~~l~~~~~~~~sv~l~W~~p~----~~~~~~y~v~y~~~~~~~~~~~~~~-----~~~~~~~~i~~L~p~t~Y~~~V~   73 (91)
T d1fnfa2           3 PPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSI-----SPSDNAVVLTNLLPGTEYVVSVS   73 (91)
T ss_dssp             CCEEEEEESCCSSCEEEEEECCT----TCCCSEEEEEEEETTCTTCCEEEEE-----CTTCCEEEECSCCTTCEEEEEEE
T ss_pred             cCCceEEEEeCCCEEEEEEEecC----CCCcceeEEEEEECCCCccEEEEEe-----CCCceEEEEeceeCCCEEEEEEE
Confidence            68999999999999999999875    4568899999998876654433333     45778999999999999999999


Q ss_pred             EEeCCCCCC
Q psy3718         331 ALNKLGPGP  339 (543)
Q Consensus       331 a~n~~G~s~  339 (543)
                      |++..|.|.
T Consensus        74 a~~~~g~S~   82 (91)
T d1fnfa2          74 SVYEQHEST   82 (91)
T ss_dssp             EEETTEECC
T ss_pred             EEcCCCCCC
Confidence            999988775

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.6e-11  Score=93.63  Aligned_cols=100  Identities=23%  Similarity=0.301  Sum_probs=62.7

Q ss_pred             eeeccCCCCCCCCCCcEEEEe--ccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCC
Q psy3718         345 KQYTAEGTPEQPPQDNTCTTL--TSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLIT  422 (543)
Q Consensus       345 ~~~t~~~~p~~~P~~~~~~~~--~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~  422 (543)
                      ..+|.+.+|..||.++++...  +.+++.|+|++|.  ..                                        
T Consensus         3 ~~~T~~~~P~~pP~~~~v~~~~~~~~sv~v~W~~P~--~~----------------------------------------   40 (111)
T d1x5ka1           3 HGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPS--EA----------------------------------------   40 (111)
T ss_dssp             SSCSCCCCCCSCCEEEEEEECSSCTTCEEEEEECCS--CC----------------------------------------
T ss_pred             ceEeCCCCCCCCCCCcEEEEecCCCCEEEEEEEccc--cC----------------------------------------
Confidence            346777888889998887654  5667888888762  23                                        


Q ss_pred             CCcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccc
Q psy3718         423 ANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKN  501 (543)
Q Consensus       423 ~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~  501 (543)
                       +|.|.+|.|.|......  ................+.+.+|+|+ .|.|+|+|              .|..|.|++|..
T Consensus        41 -~g~i~~Y~i~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A--------------~n~~G~g~~S~~  103 (111)
T d1x5ka1          41 -NGKITGYIIYYSTDVNA--EIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQA--------------RNSKGMGPMSEA  103 (111)
T ss_dssp             -SSCCCEEEEEEESCSSS--CTTTSEEEEESTTCSEEEECSCCSSSEEEEEEEE--------------ECSSCBCCCCCC
T ss_pred             -CCceeeeEEeeeecCCC--CcceeEEEEeCCCeeEEEECCCCCCCEEEEEEEE--------------EcCCCCcCCCCC
Confidence             44444555544433321  0111000001123334566699999 99999999              999999998765


Q ss_pred             cc
Q psy3718         502 DR  503 (543)
Q Consensus       502 ~~  503 (543)
                      ..
T Consensus       104 v~  105 (111)
T d1x5ka1         104 VQ  105 (111)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.6e-11  Score=91.42  Aligned_cols=99  Identities=15%  Similarity=0.153  Sum_probs=62.4

Q ss_pred             eeeeccCCCCCCCCCC-cEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCC
Q psy3718         344 VKQYTAEGTPEQPPQD-NTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLIT  422 (543)
Q Consensus       344 ~~~~t~~~~p~~~P~~-~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~  422 (543)
                      +.++|.++.|. +|.+ +.+...+++++.|+|.+|. .+.+..+.+|.+++                             
T Consensus         2 v~~~T~~~~P~-~P~~~~~~~~~~~~sv~l~W~~P~-~~~g~~~~~y~v~~-----------------------------   50 (107)
T d2crma1           2 VEFTTCPDKPG-IPVKPSVKGKIHSHSFKITWDPPK-DNGGATINKYVVEM-----------------------------   50 (107)
T ss_dssp             CSCCSCCCCCC-CCCCCEEEEEEETTEEEEECCCCT-TCCSSCCCEEEEEE-----------------------------
T ss_pred             EEEECCCCCCc-CCCCCEEEeeecCCEEEEEEEECc-cCCcceEEEEEEEE-----------------------------
Confidence            35677778786 4555 4445578899999999762 12223444454444                             


Q ss_pred             CCcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccc
Q psy3718         423 ANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKN  501 (543)
Q Consensus       423 ~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~  501 (543)
                                  +..+.. ......    .......+.+.+|+|+ .|.|+|+|              .|..|.|++|..
T Consensus        51 ------------~~~~~~-~~~~~~----~~~~~~~~~i~~L~p~t~Y~~rV~A--------------~n~~G~s~~S~~   99 (107)
T d2crma1          51 ------------AEGSNG-NKWEMI----YSGATREHLCDRLNPGCFYRLRVYC--------------ISDGGQSAVSES   99 (107)
T ss_dssp             ------------EESSSS-CCCEEE----ECSSCSEEEECSCCTTSCEEEEEEE--------------EETTEECCCCCC
T ss_pred             ------------EeecCC-CcEEEe----ecCCccEEEEeccCCCCEEEEEEEE--------------ECCCcCcCCCCc
Confidence                        433322 111110    0133344566699999 99999999              999999999876


Q ss_pred             ccc
Q psy3718         502 DRV  504 (543)
Q Consensus       502 ~~v  504 (543)
                      ..+
T Consensus       100 v~v  102 (107)
T d2crma1         100 LLV  102 (107)
T ss_dssp             CCC
T ss_pred             EEE
Confidence            654

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.1e-10  Score=86.16  Aligned_cols=88  Identities=24%  Similarity=0.342  Sum_probs=70.8

Q ss_pred             CCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEE
Q psy3718         251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQ  330 (543)
Q Consensus       251 ~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~  330 (543)
                      +|.++++..++.+++.|+|.++     .+.+.+|.++|+.............     .....++++.+|.|++.|.|+|+
T Consensus         2 pP~~l~~~~v~~~si~l~W~~p-----~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~i~~L~p~t~Y~~~V~   71 (90)
T d1fnha1           2 APTDLKFTQVTPTSLSAQWTPP-----NVQLTGYRVRVTPKEKTGPMKEINL-----APDSSSVVVSGLMVATKYEVSVY   71 (90)
T ss_dssp             CCEEEEEEEECSSCEEEEEECC-----SSCCSEEEEEEEESSSCSCCCEEEE-----CTTCCEEEECSCCTTCEEEEEEE
T ss_pred             CCCCEEEEEecCCEEEEEEEcc-----ceeccceEEEEEeeeCCCceEEEEe-----CCCCeEEEEecccCceEEEEEEE
Confidence            6899999999999999999998     4467889999988766554332222     45678999999999999999999


Q ss_pred             EEeCCCCCCCCcceeeecc
Q psy3718         331 ALNKLGPGPMSEEVKQYTA  349 (543)
Q Consensus       331 a~n~~G~s~~s~~~~~~t~  349 (543)
                      |+|..|.|+++.. .+.|.
T Consensus        72 a~n~~g~s~~~~~-~~~T~   89 (90)
T d1fnha1          72 ALKDTLTSRPAQG-VVTTL   89 (90)
T ss_dssp             EEETTEECCCEEE-EEECC
T ss_pred             EEeCCCCcCCEeE-EEEcC
Confidence            9999999976643 45553

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=8.5e-11  Score=87.22  Aligned_cols=84  Identities=24%  Similarity=0.346  Sum_probs=65.4

Q ss_pred             CCCCCeeeEEEecCC-CeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEE
Q psy3718         248 PSGPPTHIKVEATDQ-NTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYS  326 (543)
Q Consensus       248 p~~~P~~~~~~~~~~-~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  326 (543)
                      |..+|.++++..... +.+.|+|+++.    ++.+.+|+|.|+..+........ ..   .+....++.|.+|.|++.|.
T Consensus         1 P~~PP~~l~v~~~~~ts~i~v~W~~p~----~~~i~~Y~v~y~~~~~~~~~~~~-~~---~~~~~~~~~i~~L~p~t~Y~   72 (94)
T d1fnfa1           1 PLSPPTNLHLEANPDTGVLTVSWERST----TPDITGYRITTTPTNGQQGNSLE-EV---VHADQSSCTFDNLSPGLEYN   72 (94)
T ss_dssp             CCCCCEEEEEEECSSSSCEEEEEECCS----CSSCCEEEEEEEETTTCSSCCEE-EE---ECTTCCEEECCCCCTTSCEE
T ss_pred             CCCcCcCcEEEEecCCCEEEEEeeCCC----CCCeeEEEEEEEEecccCceEEE-EE---eCCCccEEEECCCCCCCEEE
Confidence            456899999998765 56999999885    34589999999987654433222 11   14567899999999999999


Q ss_pred             EEEEEEeCCCCCC
Q psy3718         327 VVVQALNKLGPGP  339 (543)
Q Consensus       327 ~~V~a~n~~G~s~  339 (543)
                      |+|.|++..|.|.
T Consensus        73 v~V~a~~~~g~s~   85 (94)
T d1fnfa1          73 VSVYTVKDDKESV   85 (94)
T ss_dssp             EEEEEEETTEECC
T ss_pred             EEEEEEcCCCEeC
Confidence            9999999988764

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=6e-11  Score=90.67  Aligned_cols=87  Identities=18%  Similarity=0.221  Sum_probs=56.8

Q ss_pred             CCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEE
Q psy3718         353 PEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKV  432 (543)
Q Consensus       353 p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i  432 (543)
                      |+.+|.++.+...+++++.|+|.++  .+.++.|.+|.|+|+.                                     
T Consensus        10 pP~~P~~~~v~~~~~~sv~l~W~p~--~~~g~~I~~Y~v~~~~-------------------------------------   50 (108)
T d1x4za1          10 PPEAPDRPTISTASETSVYVTWIPR--GNGGFPIQSFRVEYKK-------------------------------------   50 (108)
T ss_dssp             CCCCCCCCEEEECCSSEEEEECCCC--CCTTSCCCEEEEEEEE-------------------------------------
T ss_pred             CCccCCCCEEEEccCCEEEEEEECC--CCCCCccEEEEEEEEe-------------------------------------
Confidence            4447888999889999999999865  2334445555555543                                     


Q ss_pred             EEeeCCCCCCCCCccceeeeeCCCC--ccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcc
Q psy3718         433 VYGPSDTWYGHPGSFRNHCTWDPRG--RNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCK  500 (543)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~  500 (543)
                          .+.. ......   ...+...  .+.+.+|.|+ .|.|+|+|              .|.+|.|++|.
T Consensus        51 ----~~~~-~~~~~~---~~~~~~~~~~~~v~~L~p~t~Y~frV~A--------------~N~~G~s~~S~   99 (108)
T d1x4za1          51 ----LKKV-GDWILA---TSAIPPSRLSVEITGLEKGISYKFRVRA--------------LNMLGESEPSA   99 (108)
T ss_dssp             ----SSSC-CCCEEE---EEEECTTCCEEEEESCCTTCEEEEEEEE--------------EETTEECCCCC
T ss_pred             ----cCCC-CceEEE---EEeecCCccEEEECCCCCCCEEEEEEEE--------------ECCCcCCCCCC
Confidence                2221 011110   0112233  3455599999 99999999              99999999865

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.19  E-value=1.5e-10  Score=85.87  Aligned_cols=89  Identities=17%  Similarity=0.234  Sum_probs=71.7

Q ss_pred             CCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEE
Q psy3718         249 SGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVV  328 (543)
Q Consensus       249 ~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~  328 (543)
                      ..+|.++.+..++.+++.|+|.++     .+.+.+|.|.|+..+..........     .....++.+.+|.|++.|.|+
T Consensus         4 ~~~P~~l~v~~v~~~si~v~W~~p-----~~~~~~y~i~~~~~~~~~~~~~~~~-----~~~~~~~~i~~L~p~t~Y~v~   73 (93)
T d1tdqa1           4 IDGPTQILVRDVSDTVAFVEWTPP-----RAKVDFILLKYGLVGGEGGKTTFRL-----QPPLSQYSVQALRPGSRYEVS   73 (93)
T ss_dssp             SCCCEEEEEEEECSSCEEEEEECC-----SSCCSEEEEEEEESSSSCCCEEEEE-----CTTCSEEEECSCCTTCEEEEE
T ss_pred             CCcCCCCEEEEeCCCEEEEEEEcc-----ccCCCceEEEEEeccCcceeeEEEe-----CCCceEEEEeCcccceEEEEE
Confidence            358999999999999999999987     4578899999998876554433333     556789999999999999999


Q ss_pred             EEEEeCCCCCCCCcceeeec
Q psy3718         329 VQALNKLGPGPMSEEVKQYT  348 (543)
Q Consensus       329 V~a~n~~G~s~~s~~~~~~t  348 (543)
                      |+|++..|.|.++. ..++|
T Consensus        74 V~a~~~~g~s~~~~-~~~tT   92 (93)
T d1tdqa1          74 ISAVRGTNESDASS-TQFTT   92 (93)
T ss_dssp             EEEEETTEECCCEE-EEEEC
T ss_pred             EEEEeCCCCcCCEE-EEEEC
Confidence            99999999886543 44443

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=8.1e-12  Score=94.79  Aligned_cols=95  Identities=18%  Similarity=0.296  Sum_probs=64.8

Q ss_pred             eeeeccCCCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCC
Q psy3718         344 VKQYTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITA  423 (543)
Q Consensus       344 ~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~  423 (543)
                      +.+.|..++|. +|.++++...+++++.|+|.+|.    ++.+.+|.|+|                              
T Consensus         2 v~v~T~~~vP~-~P~~~~~~~~~~~si~l~W~~p~----~~~i~~Y~i~y------------------------------   46 (102)
T d1x5za1           2 IQVITQTGVPG-QPLNFKAEPESETSILLSWTPPR----SDTIANYELVY------------------------------   46 (102)
T ss_dssp             CCCCCCSCCCC-CCEEEEEECSSSSEEEEEEECCS----CCCCCEEEECB------------------------------
T ss_pred             eEEECCCCCCc-CCCCeEEEEccCCEEEEEEECCC----CCCccceEEEE------------------------------
Confidence            45667778886 78999999999999999999762    23444555544                              


Q ss_pred             CcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcccc
Q psy3718         424 NGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKND  502 (543)
Q Consensus       424 ~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~  502 (543)
                                 +..+..  .....    .......+.+.+|+|+ .|.|+|+|              .|..|.|.++...
T Consensus        47 -----------~~~~~~--~~~~~----~~~~~~~~~i~~L~p~t~Y~~~V~A--------------~n~~G~g~~S~~v   95 (102)
T d1x5za1          47 -----------KDGEHG--EEQRI----TIEPGTSYRLQGLKPNSLYYFRLAA--------------RSPQGLGASTAEI   95 (102)
T ss_dssp             -----------EESSSC--CCBCC----EECSSSEEEEECCCTTCEEEECEEE--------------ECSSCEEEECCCE
T ss_pred             -----------EeCCCC--ceEEE----EcCCcCEEEECCCCCCCEEEEEEEE--------------EcCCCEeCCCCCE
Confidence                       443322  11111    1123345666699999 99999999              9999999877654


Q ss_pred             cc
Q psy3718         503 RV  504 (543)
Q Consensus       503 ~v  504 (543)
                      .+
T Consensus        96 ~~   97 (102)
T d1x5za1          96 SA   97 (102)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.5e-11  Score=92.50  Aligned_cols=70  Identities=13%  Similarity=0.198  Sum_probs=57.4

Q ss_pred             eeEeecCCCeEEEE------EeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEe
Q psy3718          60 NQTSRRGEPSVLQC------EAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIK  133 (543)
Q Consensus        60 ~~~v~~g~~~~l~C------~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~  133 (543)
                      .+.+..|+...|.|      .+.|.|.|+|.|+|||++|.. ++.++...     +   ..|.|.++..+|+|.|+|.|.
T Consensus         8 ~q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~-~~~~~~~~-----~---~~L~I~~v~~~D~G~Y~C~a~   78 (103)
T d1iray2           8 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL-DNIHFSGV-----K---DRLIVMNVAEKHRGNYTCHAS   78 (103)
T ss_dssp             EEEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCC-CSSSEEEE-----T---TEEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccC-CCcEEEec-----C---CEEEEcccccccCcEEEEEEE
Confidence            36788999999999      567899999999999999964 34444432     2   269999999999999999999


Q ss_pred             cccce
Q psy3718         134 SQKIS  138 (543)
Q Consensus       134 n~~~s  138 (543)
                      |..+.
T Consensus        79 n~~~g   83 (103)
T d1iray2          79 YTYLG   83 (103)
T ss_dssp             EEETT
T ss_pred             ECcCC
Confidence            97654

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=8.7e-12  Score=89.91  Aligned_cols=72  Identities=19%  Similarity=0.304  Sum_probs=57.3

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeeccCCc-eEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPI-GILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFT  129 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~  129 (543)
                      .|.|...|....+.+|++++|.|.+.|.|.+ .+.|++++..+....                ..|.|.+++.+|+|.|.
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~----------------~~l~i~~v~~~d~G~Y~   64 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN----------------SSLNIVNAKFEDSGEYK   64 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCS----------------SEEEECSCCGGGCEEEE
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeeccc----------------ceeEECCCChhhCCcEE
Confidence            4788889988999999999999999999876 456788888774211                26999999999999999


Q ss_pred             EEEecccce
Q psy3718         130 CEIKSQKIS  138 (543)
Q Consensus       130 C~a~n~~~s  138 (543)
                      |.|.|...+
T Consensus        65 C~a~~s~~S   73 (82)
T d1f2qa1          65 CQHQQVNES   73 (82)
T ss_dssp             EECTTSSCC
T ss_pred             EEecCCCCc
Confidence            999986443

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.9e-11  Score=95.06  Aligned_cols=103  Identities=23%  Similarity=0.426  Sum_probs=77.7

Q ss_pred             CCCeeeEEEe--cCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEE
Q psy3718         250 GPPTHIKVEA--TDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSV  327 (543)
Q Consensus       250 ~~P~~~~~~~--~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~  327 (543)
                      .+|.++.+..  .+++++.|.|.++...  ++.+..|.|+|+.........   .......+..+.+.|.+|.+++.|.|
T Consensus         6 ~pP~~~~v~~~~~~~~si~v~W~~p~~~--~~~~~~Y~v~y~~~~~~~~~~---~~~~~~~~~~~~~~i~~L~~~t~Y~~   80 (115)
T d1bqua2           6 NPPHNLSVINSEELSSILKLTWTNPSIK--SVIILKYNIQYRTKDASTWSQ---IPPEDTASTRSSFTVQDLKPFTEYVF   80 (115)
T ss_dssp             CCCEEEEEECC--CCSCEEEEEECCGGG--GTSCEEEEEEEEETTCSSCEE---CCGGGGCSCCSEEEECSCCSSEEEEE
T ss_pred             CCCCCCEEEEeccCCCEEEEEEeecccc--ccceeeeeeeeeeeeeeeeec---cccccccccccEEeeCCCccCcEEEE
Confidence            5788888774  4578899999988765  678899999999877654321   12222245668999999999999999


Q ss_pred             EEEEEeCCCCCCC---CcceeeeccCCCCCCCC
Q psy3718         328 VVQALNKLGPGPM---SEEVKQYTAEGTPEQPP  357 (543)
Q Consensus       328 ~V~a~n~~G~s~~---s~~~~~~t~~~~p~~~P  357 (543)
                      +|+|.|..|.|.+   +....++|.+.+|..+|
T Consensus        81 ~V~a~~~~G~g~~S~~S~~~~~~T~~~~P~~~P  113 (115)
T d1bqua2          81 RIRCMKEDGKGYWSDWSEEASGITYEDRPSKEP  113 (115)
T ss_dssp             EEEEEETTSCSCCCCCCCCEEEEECCCHHHHHH
T ss_pred             EEEEEeCCCccCCcCCcCCEEEECCCCCCCCCc
Confidence            9999999998754   45677888777665444

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=2.5e-11  Score=95.54  Aligned_cols=102  Identities=15%  Similarity=0.218  Sum_probs=74.9

Q ss_pred             CCCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCce----EEEEee------eccCCceeEE
Q psy3718         245 EEAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFL----FETVDF------SKEEGKEHHL  314 (543)
Q Consensus       245 ~~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~----~~~~~~------~~~~~~~~~~  314 (543)
                      ..+| ++|.++++.. +.+++.|.|.+|...  ++.+.+|.|+|+.........    ......      ....+....+
T Consensus         5 ~~~P-~aP~~v~v~~-~~~si~l~W~~P~~~--~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (123)
T d1wfta_           5 SSGP-GAPSTVRISK-NVDGIHLSWEPPTSP--SGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLAN   80 (123)
T ss_dssp             SSCC-CCCEEEEEEE-CSSEEEEEEECCSSC--CSSCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHTT
T ss_pred             CCCC-cCCcccEEEe-CCCEEEEEecCchhc--CCceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCccEE
Confidence            3445 5899999875 678999999998776  789999999998876543211    000000      0012233566


Q ss_pred             EECCCCCCCEEEEEEEEEeCCCCCCCCcceeeeccC
Q psy3718         315 TLSSLKTYTQYSVVVQALNKLGPGPMSEEVKQYTAE  350 (543)
Q Consensus       315 ~i~~L~p~t~Y~~~V~a~n~~G~s~~s~~~~~~t~~  350 (543)
                      .+.+|.|++.|.|+|+|+|..|.|++++...++|..
T Consensus        81 ~i~~L~p~t~Y~frV~A~N~~G~Gp~S~~~~~~t~~  116 (123)
T d1wfta_          81 AHIDYTSRPAIVFRISAKNEKGYGPATQIRWLQGNS  116 (123)
T ss_dssp             CCCBCSSSCEEEEEEEEBSSSSBCCCEEEEEECCSC
T ss_pred             EEcCCCCCCEEEEEEEEecCCcCCCCCCcEEEEecC
Confidence            788999999999999999999999999988888743

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.9e-10  Score=87.39  Aligned_cols=97  Identities=16%  Similarity=0.160  Sum_probs=73.6

Q ss_pred             CCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEE
Q psy3718         249 SGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVV  328 (543)
Q Consensus       249 ~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~  328 (543)
                      +.||.++++..++++++.|+|..+...........|.+.|+..+..........    .......+.|.+|+|++.|.|+
T Consensus         3 l~pP~~l~v~~~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~i~~L~p~t~Y~~r   78 (104)
T d2b5ib2           3 LMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLT----LKQKQEWICLETLTPDTQYEFQ   78 (104)
T ss_dssp             CCCCEEEEEEEECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCSTTSCCEE----ECSCCCEEEECSCCTTCEEEEE
T ss_pred             cCCCCCcEEEEEeCCEEEEEEccccccccccceeEEEEEEecccccceeeeEEe----cCCCcEEEEECCCCCCCEEEEE
Confidence            358999999999999999999998765445567789999987765432211111    1346778999999999999999


Q ss_pred             EEEEeCCCC----CCCCcceeeecc
Q psy3718         329 VQALNKLGP----GPMSEEVKQYTA  349 (543)
Q Consensus       329 V~a~n~~G~----s~~s~~~~~~t~  349 (543)
                      |+|.|..|.    |.+|.++.+.|.
T Consensus        79 Vra~~~~g~~g~wS~wS~~v~~~T~  103 (104)
T d2b5ib2          79 VRVKPLQGEFTTWSPWSQPLAFRTK  103 (104)
T ss_dssp             EEEEESCCSSCCCCCCCCCEEEECC
T ss_pred             EEEEECCCCCCCCCCCcCCEEEECC
Confidence            999998884    455666777764

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.6e-10  Score=87.81  Aligned_cols=89  Identities=21%  Similarity=0.275  Sum_probs=70.8

Q ss_pred             CCCCeeeEEEec--CCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEE
Q psy3718         249 SGPPTHIKVEAT--DQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYS  326 (543)
Q Consensus       249 ~~~P~~~~~~~~--~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  326 (543)
                      |.+|.++.+..+  .+..+.|+|++|.....++.+..|.|+|+..+...+ ....+     ......+.|.+|.|++.|.
T Consensus         2 P~pP~~l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~~~-~~~~~-----~~~~~~~~i~~L~p~t~Y~   75 (104)
T d1n26a3           2 PDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTF-TTWMV-----KDLQHHCVIHDAWSGLRHV   75 (104)
T ss_dssp             CCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSCC-EEEEC-----GGGCSEEEESSCCTTCCEE
T ss_pred             CcCCCCCEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCCCce-eeecc-----ccceEEEEECCCCCCCEEE
Confidence            468899999876  356899999998754447789999999998776543 22222     3466789999999999999


Q ss_pred             EEEEEEeCCCCCCCCcc
Q psy3718         327 VVVQALNKLGPGPMSEE  343 (543)
Q Consensus       327 ~~V~a~n~~G~s~~s~~  343 (543)
                      |+|+|.|..|.|.+|++
T Consensus        76 ~rVra~n~~g~g~wSew   92 (104)
T d1n26a3          76 VQLRAQEEFGQGEWSEW   92 (104)
T ss_dssp             EEEEEEETTTBSCCCCC
T ss_pred             EEEEEEeCCCccCCcCC
Confidence            99999999998887764

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=3.9e-10  Score=85.37  Aligned_cols=93  Identities=20%  Similarity=0.271  Sum_probs=70.3

Q ss_pred             CCCCeeeEEE----ecCCCeEEEEeeCCCCCC--CCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCC
Q psy3718         249 SGPPTHIKVE----ATDQNTLKVSWSPPERDH--WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTY  322 (543)
Q Consensus       249 ~~~P~~~~~~----~~~~~~i~l~W~~~~~~~--~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  322 (543)
                      |.+|.++.+.    ....+++.|+|++|....  .+..+..|+|+|+..+.........       ...+.+.+.+|.++
T Consensus         3 P~pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~~~~~~~~-------~~~~~~~i~~L~p~   75 (103)
T d1f6fb2           3 PEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHFT-------GHQTQFKVFDLYPG   75 (103)
T ss_dssp             CCCCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCSCCEEEEE-------ETCSEEEECCCCTT
T ss_pred             CCCCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCCcceeeecc-------cceeEEEeCCCCcc
Confidence            4688888875    345678999999986532  2457789999999877654332221       24578999999999


Q ss_pred             CEEEEEEEEEeCCCC-CCCCcceeeec
Q psy3718         323 TQYSVVVQALNKLGP-GPMSEEVKQYT  348 (543)
Q Consensus       323 t~Y~~~V~a~n~~G~-s~~s~~~~~~t  348 (543)
                      +.|.|+|+|.+..|. |.+|+...+.+
T Consensus        76 t~Y~~rVra~~~~G~wS~wS~~~~~~~  102 (103)
T d1f6fb2          76 QKYLVQTRCKPDHGYWSRWSQESSVEM  102 (103)
T ss_dssp             CEEEEEEEEEESSSCCCCCCCCEEEEC
T ss_pred             eEEEEEEEEEeCCCCCCCCcCceeeEC
Confidence            999999999999995 88888877654

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=4.7e-11  Score=89.18  Aligned_cols=86  Identities=16%  Similarity=0.134  Sum_probs=56.9

Q ss_pred             CCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEe
Q psy3718         356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYG  435 (543)
Q Consensus       356 ~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~  435 (543)
                      +|..+++...+.++|.|.|++|.  ..+|.|.+|.|                                         .|+
T Consensus         3 ~~~~l~~~~~t~~si~l~W~~p~--~~~g~i~~Y~v-----------------------------------------~~~   39 (95)
T d2djsa1           3 TVPIMHQVSATMRSITLSWPQPE--QPNGIILDYEI-----------------------------------------RYY   39 (95)
T ss_dssp             CCSCCEEEEECSSEEEEECCCCS--CCSSCEEEEEE-----------------------------------------EEE
T ss_pred             CCCccEEEeecCCEEEEEEEECC--CCCcceEEeee-----------------------------------------eee
Confidence            34468888899999999999772  33444545544                                         444


Q ss_pred             eCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccccc
Q psy3718         436 PSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDR  503 (543)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~  503 (543)
                      ..+...+......     .....+.+.+|+|+ .|.|+|+|              .|.+|.|++|....
T Consensus        40 ~~~~~~~~~~~~~-----~~~~~~~i~~L~p~t~Y~~~V~A--------------~n~~G~g~~S~~~~   89 (95)
T d2djsa1          40 EKEHNEFNSSMAR-----SQTNTARIDGLRPGMVYVVQVRA--------------RTVAGYGKFSGKMC   89 (95)
T ss_dssp             ETTSCSTTCEEEE-----ESSSEEEEESCCTTCEEEEEEEE--------------EESSCEEEECCCEE
T ss_pred             eeccCcceeEeec-----CCccEEEEeecCCccEEEEEEEE--------------EcCCCCCCCCCCEE
Confidence            4333211111111     34455666799999 99999999              99999998776544

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.16  E-value=3.9e-11  Score=89.54  Aligned_cols=89  Identities=13%  Similarity=0.130  Sum_probs=57.3

Q ss_pred             CCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEE
Q psy3718         352 TPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYK  431 (543)
Q Consensus       352 ~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~  431 (543)
                      .|..+|.++++..++.+++.|.|++|. ...++.|.+|+|+|                                      
T Consensus         5 ~P~~~P~~~~v~~~s~tsv~l~W~~P~-~~~~~~i~gY~i~y--------------------------------------   45 (95)
T d2ibga1           5 DPMPVPELLEIEEYSETAVVLHWSLAS-DADEHLITGYYAYY--------------------------------------   45 (95)
T ss_dssp             CCCCCCEECCCBCCSSSCEEEEEECCT-TCCGGGCCEEEEEE--------------------------------------
T ss_pred             CCCCCCcCeEEEEeCCCEEEEEEEeee-eccCCcccccceeE--------------------------------------
Confidence            344578889999999999999999663 22344455555555                                      


Q ss_pred             EEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCc
Q psy3718         432 VVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKC  499 (543)
Q Consensus       432 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~  499 (543)
                         +..+.. .......  ........+.+.||+|+ .|.|+|+|              .|..|.|++|
T Consensus        46 ---~~~~~~-~~~~~~~--~~~~~~~~~~i~~L~p~t~Y~~~V~A--------------~n~~G~s~~S   94 (95)
T d2ibga1          46 ---RPSSSA-GEYFKAT--IEGAHARSFKIAPLETATMYEFKLQS--------------FSAASASEFS   94 (95)
T ss_dssp             ---EETTCC-SCCEEEE--EECTTCCEEEECSCCTTCEEEEEEEE--------------ECSSCBCCCC
T ss_pred             ---eeeeec-ceeeeee--ccCCceeEEEEeeccCCeEEEEEEEE--------------EeCCccCCCC
Confidence               433321 1111100  00022334556699999 99999999              9999999876

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=7e-13  Score=100.60  Aligned_cols=99  Identities=24%  Similarity=0.359  Sum_probs=78.1

Q ss_pred             CCCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEE
Q psy3718         246 EAPSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQY  325 (543)
Q Consensus       246 ~~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y  325 (543)
                      +.|+..|..+.+..++++++.|+|.+|...  ++.+.+|+|+|+..+......+...   ........+.+.+|.+++ |
T Consensus         2 a~~~d~P~~v~~~~~~~~sv~l~W~pP~~~--ng~i~~Y~v~y~~~~~~~~~~~~~~---~~~~~~~~~~~~~L~~~t-Y   75 (102)
T d2dtge1           2 AKADDIVGPVTHEIFENNVVHLMWQEPKEP--NGLIVLYEVSYRRYGDEELHLCDTR---KHFALERGCRLRGLSPGN-Y   75 (102)
T ss_dssp             CCCCCCCCCCCCCSSSSSCCCCCCCCCCSC--SSCEEEECCCCBSSSBCCCCCCCCS---SSCCCTTCCCCCSCCSSE-E
T ss_pred             CCCCCCCCCCEEEEECCCEEEEEEEeCCCC--cceEEEeeeEEEecCCCCceeeeee---ecccceEEEEEeccceee-E
Confidence            345667888888888999999999998765  7899999999987665443322211   123455678999999975 9


Q ss_pred             EEEEEEEeCCCCCCCCcceeeeccC
Q psy3718         326 SVVVQALNKLGPGPMSEEVKQYTAE  350 (543)
Q Consensus       326 ~~~V~a~n~~G~s~~s~~~~~~t~~  350 (543)
                      .|+|+|.|..|.|++|+++.|.+.+
T Consensus        76 ~~rV~A~n~~G~g~~S~~v~f~~~e  100 (102)
T d2dtge1          76 SVRIRATSLAGNGSWTEPTYFYVTD  100 (102)
T ss_dssp             CCCCCEEETTBCCCCCCCCEECCCC
T ss_pred             EEEEEEEcCCccCCCCCCEEEEccC
Confidence            9999999999999999999998864

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.9e-10  Score=84.82  Aligned_cols=80  Identities=30%  Similarity=0.471  Sum_probs=65.5

Q ss_pred             eeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEE
Q psy3718         253 THIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQAL  332 (543)
Q Consensus       253 ~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~  332 (543)
                      ++|++..++++++.|.|.+|     .+.+.+|.|.|+..+.........+     ++...++.|.+|.|++.|.|+|.|+
T Consensus         1 rnl~v~~~t~~sv~l~W~~p-----~~~~~~Y~v~~~~~~~~~~~~~~~~-----~~~~t~~~l~~L~p~t~Y~~~V~a~   70 (91)
T d1fnaa_           1 RDLEVVAATPTSLLISWDAP-----AVTVRYYRITYGETGGNSPVQEFTV-----PGSKSTATISGLKPGVDYTITVYAV   70 (91)
T ss_dssp             CCCEEEEECSSCEEEECCCC-----SSCCSEEEEEEEETTCCSCCEEEEE-----ETTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCEEEEeCCCEEEEEEEcc-----ceEecEEEEEEEcCCCCceeEEEEe-----CCCccEEEeCCCCCCCEEEEEEEEE
Confidence            47889999999999999987     3467899999998776554333333     4567899999999999999999999


Q ss_pred             eCCCCCCCCc
Q psy3718         333 NKLGPGPMSE  342 (543)
Q Consensus       333 n~~G~s~~s~  342 (543)
                      +..|.|+++.
T Consensus        71 ~~~g~s~~~s   80 (91)
T d1fnaa_          71 TGRGDSPASS   80 (91)
T ss_dssp             CTTCCSSCSC
T ss_pred             eCCccCCCcC
Confidence            9999886553

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=4.9e-11  Score=88.84  Aligned_cols=82  Identities=23%  Similarity=0.409  Sum_probs=65.7

Q ss_pred             CCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEE
Q psy3718         250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVV  329 (543)
Q Consensus       250 ~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V  329 (543)
                      .+|.++++..++.+++.|.|.++     .+.+.+|.+.|+........     ..........++.+.+|.|++.|.|+|
T Consensus         3 d~P~~l~v~~vt~~sv~l~W~~p-----~~~~~~y~i~~~~~~~~~~~-----~~~~~~~~~~~~~i~~L~p~t~Y~~~V   72 (94)
T d1j8ka_           3 DRPKGLAFTDVDVDSIKIAWESP-----QGQVSRYRVTYSSPEDGIHE-----LFPAPDGEEDTAELQGLRPGSEYTVSV   72 (94)
T ss_dssp             CCCCCCEEEEEETTEEEEECCCC-----SSCCSCEEEEEEETTTEEEE-----ECCCCCSSCCEEEECSCCCCSEEEEEE
T ss_pred             CCCCCCEEEEecCCEEEEEEeCC-----CccccceEEEEEeecCCCce-----EEEecCCCccEEEECCCCCCCEEEEEE
Confidence            47889999999999999999988     34678999999887654221     111225577899999999999999999


Q ss_pred             EEEeCCCCCCCC
Q psy3718         330 QALNKLGPGPMS  341 (543)
Q Consensus       330 ~a~n~~G~s~~s  341 (543)
                      .|+|..|.|.+.
T Consensus        73 ~a~~~~g~S~p~   84 (94)
T d1j8ka_          73 VALHDDMESQPL   84 (94)
T ss_dssp             EECSSSCCCCCE
T ss_pred             EEEeCCCCcCCE
Confidence            999999887654

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2.8e-11  Score=92.67  Aligned_cols=32  Identities=9%  Similarity=0.073  Sum_probs=26.9

Q ss_pred             ccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccccc
Q psy3718         458 RNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDR  503 (543)
Q Consensus       458 ~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~  503 (543)
                      .+.+.+|.|+ .|.|+|+|              .|..|.|++|....
T Consensus        70 ~~~i~~L~p~t~Y~frV~A--------------~N~~G~s~~S~~~~  102 (108)
T d1wf5a1          70 SVTVKGLVPARSYQFRLCA--------------VNDVGKGQFSKDTE  102 (108)
T ss_dssp             EEEEESCCTTCEEEEEEEE--------------EESSCEEEECCCCS
T ss_pred             EEEECCCCCCCEEEEEEEE--------------EcCCcCCCCcCCcC
Confidence            4555699999 99999999              99999998876443

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=4e-10  Score=85.55  Aligned_cols=94  Identities=20%  Similarity=0.226  Sum_probs=68.1

Q ss_pred             CCCCeeeEEE----ecCCCeEEEEeeCCCCCC--CCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCC
Q psy3718         249 SGPPTHIKVE----ATDQNTLKVSWSPPERDH--WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTY  322 (543)
Q Consensus       249 ~~~P~~~~~~----~~~~~~i~l~W~~~~~~~--~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  322 (543)
                      |.+|.++.+.    ..+.+.+.|+|.+|....  ....+..|.+.|+..+........       ......+.+.+|.++
T Consensus         3 P~pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~-------~~~~~~~~i~~L~p~   75 (104)
T d3d48r2           3 PDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHF-------AGQQTEFKILSLHPG   75 (104)
T ss_dssp             CCCCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCSSCEEEE-------EETCSEEEECC--CC
T ss_pred             CcCCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeeccccccccceeeec-------cccccEEEECCCCCC
Confidence            4688888875    345678999999986432  234667899999887765433222       225678999999999


Q ss_pred             CEEEEEEEEEeCCCC-CCCCcceeeecc
Q psy3718         323 TQYSVVVQALNKLGP-GPMSEEVKQYTA  349 (543)
Q Consensus       323 t~Y~~~V~a~n~~G~-s~~s~~~~~~t~  349 (543)
                      +.|.|+|+|.|..|. |++|+.+.++|+
T Consensus        76 t~Y~~rVrA~n~~G~ws~wS~~~~v~tP  103 (104)
T d3d48r2          76 QKYLVQVRCKPDHGYWSAWSPATFIQIP  103 (104)
T ss_dssp             CEEEEEEEEEESSSCCCCCCCCEEEECC
T ss_pred             CEEEEEEEEEeCCCCCCCCcCCEEEECc
Confidence            999999999999996 999999888763

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.15  E-value=1e-10  Score=88.20  Aligned_cols=89  Identities=12%  Similarity=0.103  Sum_probs=55.6

Q ss_pred             CCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEE
Q psy3718         351 GTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGY  430 (543)
Q Consensus       351 ~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y  430 (543)
                      ++|. +|.++.+. ...+++.|+|.+|.  +.++.|.+|.|+|                                     
T Consensus         4 dvP~-~P~~~~v~-~~~~sv~lsW~pp~--~~~~~i~~Y~v~~-------------------------------------   42 (100)
T d1cfba1           4 DVPN-APKLTGIT-CQADKAEIHWEQQG--DNRSPILHYTIQF-------------------------------------   42 (100)
T ss_dssp             CCCC-CCEEEEEE-ECSSEEEEEEECCC--CTTSCCCEEEEEE-------------------------------------
T ss_pred             cCCC-cCcCcEEE-EcCCEEEEEEcCCc--ccccceEEEEEEE-------------------------------------
Confidence            4565 88888875 46678999998762  2344455555554                                     


Q ss_pred             EEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccc
Q psy3718         431 KVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKN  501 (543)
Q Consensus       431 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~  501 (543)
                          +..+...+ ....  .........+.+.+|+|+ .|.|+|+|              .|.+|.|++|..
T Consensus        43 ----~~~~~~~~-~~~~--~~~~~~~~~~~~~~L~p~t~Y~frV~A--------------~n~~G~g~~S~~   93 (100)
T d1cfba1          43 ----NTSFTPAS-WDAA--YEKVPNTDSSFVVQMSPWANYTFRVIA--------------FNKIGASPPSAH   93 (100)
T ss_dssp             ----EESSSTTC-CEEE--EEEEETTCSEEEEECCSSEEEEEEEEE--------------EETTEECCCCCC
T ss_pred             ----ecCCCCce-eeEE--eeecCCceEEEEecCCCCCEEEEEEEE--------------EeCCcCCCCcCC
Confidence                43322200 1000  011122334555699999 99999999              999999998753

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=2e-10  Score=87.45  Aligned_cols=88  Identities=15%  Similarity=0.156  Sum_probs=64.6

Q ss_pred             CeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEE
Q psy3718         252 PTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQA  331 (543)
Q Consensus       252 P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a  331 (543)
                      |..+.+....+++|.|+|.++...  ++.+.+|.|+|+.......|......    .....++.|.+|.|++.|+|+|+|
T Consensus        11 P~~p~~~~~~~~~i~v~W~pp~~~--~~~~~~Y~i~y~~~~~~~~w~~v~~~----~~~~~~~~l~~L~p~t~Y~frVra   84 (106)
T d1cd9b2          11 DIGPDVVSHQPGCLWLSWKPWKPS--EYMEQECELRYQPQLKGANWTLVFHL----PSSKDQFELCGLHQAPVYTLQMRC   84 (106)
T ss_dssp             CC-------CCSCEEEEEECCGGG--TTSCEEEEEEEEESSTTCCCEEEEEE----ESCEEEEEECCCCSCSCEEEEEEE
T ss_pred             CCCCeEecCCCCEEEEEEcCcccC--CccceEEEEEEeeccccccceeeecc----cCCceEEEEeccCCCeEEEEEEEE
Confidence            335566777889999999998765  66789999999987665555443322    346788999999999999999999


Q ss_pred             EeCCCCCCCCccee
Q psy3718         332 LNKLGPGPMSEEVK  345 (543)
Q Consensus       332 ~n~~G~s~~s~~~~  345 (543)
                      ++..|.|.+|++..
T Consensus        85 ~~~~g~g~wS~wS~   98 (106)
T d1cd9b2          85 IRSSLPGFWSPWSP   98 (106)
T ss_dssp             EESSSCCCCCCCCC
T ss_pred             EeCCCCCCCcCCCC
Confidence            99999887776543

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.2e-11  Score=94.07  Aligned_cols=81  Identities=12%  Similarity=0.205  Sum_probs=58.3

Q ss_pred             EEeecceeEeecCCCeEEEEEeec-c--CCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKG-E--KPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC  130 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g-~--p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  130 (543)
                      +.+.++...+.+|++++|.|.+.| .  |.++|.|+||+++|.........    .......+.|.|.....+|.|.|+|
T Consensus         5 v~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~----~~~~~~~s~l~~~~~~~d~g~~ytC   80 (106)
T d1zxqa1           5 VILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAA----PAPQEATATFNSTADREDGHRNFSC   80 (106)
T ss_dssp             CEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSST----TCTTCEEEEEEEECCGGGGGCEEEE
T ss_pred             CEecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEe----ecccceeEEEEEeeehhcCCcEEEE
Confidence            445677778899999999999987 3  45689999999998533221111    1122344567888777888889999


Q ss_pred             EEecccce
Q psy3718         131 EIKSQKIS  138 (543)
Q Consensus       131 ~a~n~~~s  138 (543)
                      .|.|..++
T Consensus        81 ~A~n~~~~   88 (106)
T d1zxqa1          81 LAVLDLMS   88 (106)
T ss_dssp             EEEEECGG
T ss_pred             EEEecCCC
Confidence            99997554

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.4e-11  Score=91.27  Aligned_cols=86  Identities=15%  Similarity=0.223  Sum_probs=63.5

Q ss_pred             cceeEeecCCCeEEEEEee-ccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccc
Q psy3718          58 LRNQTSRRGEPSVLQCEAK-GEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQK  136 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~-g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  136 (543)
                      |....+.+|+.+.|.|.+. +.|.++|.|+|++..+......+..+...   +   ++|.|.+++.+|+|.|+|.|.|..
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~---~---~~L~I~~v~~~D~G~Y~C~a~N~~   82 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH---K---EKLWFVPAKVEDSGHYYCVVRNSS   82 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEE---T---TEEEETTCCGGGCEEEEEEEEETT
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEecc---C---CEEEeccceecCCEEEEEEEECCC
Confidence            4456788999999999885 67889999999987664433333332211   1   379999999999999999999998


Q ss_pred             ceeeeeeeeccccc
Q psy3718         137 ISSQQMTYEASGLK  150 (543)
Q Consensus       137 ~sv~~~~~~v~~l~  150 (543)
                      |..+ ..+.|.++.
T Consensus        83 g~~~-~~~~L~V~~   95 (101)
T d1iray1          83 YCLR-IKISAKFVE   95 (101)
T ss_dssp             EEEE-EEEEEEEEC
T ss_pred             CeEE-EEEEEEEEe
Confidence            8853 334444443

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=6e-11  Score=92.30  Aligned_cols=89  Identities=15%  Similarity=0.140  Sum_probs=60.2

Q ss_pred             CCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEE
Q psy3718         351 GTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGY  430 (543)
Q Consensus       351 ~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y  430 (543)
                      +.|. +|.++++..++.++|.|+|+++.  +.++.|.+|.|+|+..                                  
T Consensus        14 ~~P~-pP~~~~v~~~~~~sv~l~W~p~~--~~~~~i~~Y~v~~~~~----------------------------------   56 (117)
T d1uema_          14 DLPG-PPSKPQVTDVTKNSVTLSWQPGT--PGTLPASAYIIEAFSQ----------------------------------   56 (117)
T ss_dssp             CSCB-CCCCCEEEEECSSCEEEECCCCB--CSSSCCCEEEEEEEET----------------------------------
T ss_pred             ccCc-CCCCCEEEEccCCEEEEEEECCC--cCCCCeEEEEEEEecc----------------------------------
Confidence            5564 78899999999999999999662  3344566666655432                                  


Q ss_pred             EEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccc
Q psy3718         431 KVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKN  501 (543)
Q Consensus       431 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~  501 (543)
                             +.. ..+..   .........+.+.+|+|+ .|.|+|+|              .|..|.|+++..
T Consensus        57 -------~~~-~~~~~---~~~~~~~~~~~v~~L~p~t~Y~frV~A--------------~N~~G~s~~S~~  103 (117)
T d1uema_          57 -------SVS-NSWQT---VANHVKTTLYTVRGLRPNTIYLFMVRA--------------INPQGLSDPSPM  103 (117)
T ss_dssp             -------TTE-EEEEE---EEEEECSSEEEECSCCTTCEEEEEEEE--------------EETTEEEEECCC
T ss_pred             -------CCc-eeeEE---eccccccccceECCCCCCCEEEEEEEE--------------EeCCcCCCCcCC
Confidence                   211 00000   011134455667799999 99999999              999999988753

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.4e-11  Score=88.03  Aligned_cols=80  Identities=26%  Similarity=0.473  Sum_probs=64.3

Q ss_pred             CCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEE
Q psy3718         250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVV  329 (543)
Q Consensus       250 ~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V  329 (543)
                      .+|.++++...+.+++.|+|.++     .+.+.+|.|+|+..+.......     ........++.|.+|.|++.|.|+|
T Consensus         2 daP~nl~v~~~~~~s~~l~W~~p-----~~~i~~Y~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~L~p~t~Y~~~V   71 (89)
T d1fnha3           2 DAPSNLRFLATTPNSLLVSWQPP-----RARITGYIIKYEKPGSPPREVV-----PRPRPGVTEATITGLEPGTEYTIYV   71 (89)
T ss_dssp             CCCEEEEEEEEETTEEEEEEECC-----SSCCSEEEEEEECTTSCCEECT-----TCCCTTCCEEEEESCCTTCEEEEEE
T ss_pred             ccCcCCEEEEecCCEEEEEEeCC-----CcCCceEEEEEeeccCCccEEE-----EEcCCCccEEEEEeeeCCCEEEEEE
Confidence            47899999999999999999997     4568999999987665432111     1124567899999999999999999


Q ss_pred             EEEeCCCCCC
Q psy3718         330 QALNKLGPGP  339 (543)
Q Consensus       330 ~a~n~~G~s~  339 (543)
                      +|+|..|.|.
T Consensus        72 ~a~n~~g~S~   81 (89)
T d1fnha3          72 IALKNNQKSE   81 (89)
T ss_dssp             EEESSSCEEE
T ss_pred             EEEcCCCEeC
Confidence            9999988764

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.14  E-value=1.8e-10  Score=84.34  Aligned_cols=80  Identities=25%  Similarity=0.461  Sum_probs=66.5

Q ss_pred             CCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEE
Q psy3718         250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVV  329 (543)
Q Consensus       250 ~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V  329 (543)
                      ++|.++++..++++++.|+|.++     .+.+.+|.|.|+..+..... ....     .....++.+.+|.|++.|.|+|
T Consensus         2 ~~P~~l~v~~v~~~s~~l~W~~~-----~~~~~~Y~i~~~~~~~~~~~-~~~~-----~~~~~~~~i~~L~p~t~Y~~~V   70 (88)
T d1qr4a2           2 GSPKGISFSDITENSATVSWTPP-----RSRVDSYRVSYVPITGGTPN-VVTV-----DGSKTRTKLVKLVPGVDYNVNI   70 (88)
T ss_dssp             CCCSCEEEESCCSSCEEEEECCC-----SSCCSEEEEEEEETTCCCCE-EEEE-----ETTCCEEEECSCCSSCEEEEEE
T ss_pred             cCCcceEEEEecCCEEEEEEEcc-----cEeeceEEEEEEeccCCceE-EEEe-----cCCccEEEECCCCCCCEEEEEE
Confidence            47889999999999999999987     45789999999987765432 2222     3467899999999999999999


Q ss_pred             EEEeCCCCCCC
Q psy3718         330 QALNKLGPGPM  340 (543)
Q Consensus       330 ~a~n~~G~s~~  340 (543)
                      .|+|..|.|.+
T Consensus        71 ~a~~~~g~s~p   81 (88)
T d1qr4a2          71 ISVKGFEESEP   81 (88)
T ss_dssp             EEEETTEECCC
T ss_pred             EEEeCCCCcCC
Confidence            99999998754

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2e-10  Score=89.34  Aligned_cols=88  Identities=26%  Similarity=0.309  Sum_probs=69.4

Q ss_pred             ecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCC-ceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCCC
Q psy3718         259 ATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKP-FLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGP  337 (543)
Q Consensus       259 ~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~  337 (543)
                      .+++++|.|+|+++..   ++.+.+|+|.|+..+.... ..+.....  ......++.|.+|+|++.|+|+|+|+|..|.
T Consensus        26 ~~s~tsi~v~W~~p~~---~~~i~gY~v~y~~~~~~~~~~~~~~~~v--~~~~~~s~~i~~L~p~t~Y~f~V~A~n~~G~  100 (120)
T d1ujta_          26 VLTPTTVQVTWTVDRQ---PQFIQGYRVMYRQTSGLQATSSWQNLDA--KVPTERSAVLVNLKKGVTYEIKVRPYFNEFQ  100 (120)
T ss_dssp             CCBTTEEEEEEEESSC---CSSCCEEEEEEEESSSSSTTTCCEEEEC--CCTTCCEEEEESCCSSEEEEEEEEEESSSCC
T ss_pred             EeCCCeEEEEecCCCC---CCcEEEEEEEeeecccCCCCcceEEEEe--ccCceeEEEECCCCCCCEEEEEEEEEeCCcC
Confidence            3578999999998854   5689999999988654322 12222221  1456788999999999999999999999999


Q ss_pred             CCCCcceeeeccCC
Q psy3718         338 GPMSEEVKQYTAEG  351 (543)
Q Consensus       338 s~~s~~~~~~t~~~  351 (543)
                      |+.|+.+.++|.+.
T Consensus       101 G~~S~~~~~~T~e~  114 (120)
T d1ujta_         101 GMDSESKTVRTTEE  114 (120)
T ss_dssp             CCCCCCEEEEECSS
T ss_pred             cCCCCCEEEEeCCC
Confidence            99999999999775

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=1.2e-10  Score=86.25  Aligned_cols=86  Identities=9%  Similarity=-0.001  Sum_probs=60.4

Q ss_pred             CCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEE
Q psy3718         353 PEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKV  432 (543)
Q Consensus       353 p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i  432 (543)
                      |+.+|.++++...+.++|.|+|.+|... .++.+.+|.|++                                       
T Consensus         2 ~p~~p~~L~~~~~~~~si~vsW~~p~~~-~~~~~i~Y~i~~---------------------------------------   41 (94)
T d1x5aa1           2 ESLSGLSLKLVKKEPRQLELTWAGSRPR-NPGGNLSYELHV---------------------------------------   41 (94)
T ss_dssp             CCCCSCCCCEEEEETTEEEEECCCCCSS-CCSSCCEEEEEE---------------------------------------
T ss_pred             cCCCCCceEEEEcCCCEEEEEEecccCC-CCCcEEEEEEEE---------------------------------------
Confidence            4457889999999999999999987432 333344455555                                       


Q ss_pred             EEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccccc
Q psy3718         433 VYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDR  503 (543)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~  503 (543)
                        ...++.    .     ........+.+.+|+|+ .|.|+|+|              .|..|.|.+|....
T Consensus        42 --~~~~~~----~-----~~~~~~t~~~i~~L~p~t~Y~~rV~A--------------~n~~G~g~~S~~~~   88 (94)
T d1x5aa1          42 --LNQDEE----W-----HQMVLEPRVLLTKLQPDTTYIVRVRT--------------LTPLGPGPFSPDHE   88 (94)
T ss_dssp             --ECSSCE----E-----EEEESSSEEEEESCCSSCEEEEEEEE--------------ECSSSCCCCCCCEE
T ss_pred             --ecCCce----E-----EEeeccCEEEECCCCCCCEEEEEEEE--------------EcCCcCcCCCCCEE
Confidence              333221    0     11134455667799999 99999999              99999998876544

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.3e-10  Score=87.79  Aligned_cols=93  Identities=20%  Similarity=0.185  Sum_probs=63.1

Q ss_pred             CCCCeeeEEEecCCCeEEEEeeCCCCCC-CCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEE
Q psy3718         249 SGPPTHIKVEATDQNTLKVSWSPPERDH-WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSV  327 (543)
Q Consensus       249 ~~~P~~~~~~~~~~~~i~l~W~~~~~~~-~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~  327 (543)
                      |.+|.++.+...+++++.|.|.+|.... .......|.|+|+..+...+.....+.   .......+.+.+|.|++.|.|
T Consensus         2 P~~P~~l~v~~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~---~~~~~~~~~i~~L~p~t~Y~~   78 (101)
T d1iarb2           2 PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVT---YLEPSLRIAASTLKSGISYRA   78 (101)
T ss_dssp             CCCCEEEEEC----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCEEEEEEC---SSCCEEEECC-----CCCEEE
T ss_pred             cccCCcCEEEEEeCCeEEEEEccccCCCCccceeeEEEEeeecccceeeeeeeeec---cCccceEEEECCCCCCCEEEE
Confidence            3589999999999999999999875532 233456799999988766554333332   244567889999999999999


Q ss_pred             EEEEEeCCCCCCCCcce
Q psy3718         328 VVQALNKLGPGPMSEEV  344 (543)
Q Consensus       328 ~V~a~n~~G~s~~s~~~  344 (543)
                      +|+|.|..|.|++|++.
T Consensus        79 rVrA~~~~g~g~wSewS   95 (101)
T d1iarb2          79 RVRAWAQAYNTTWSEWS   95 (101)
T ss_dssp             EEEEECGGGTCCCCCCC
T ss_pred             EEEEEcCCCCCCCcCCC
Confidence            99999999988777654

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=7.8e-11  Score=89.04  Aligned_cols=96  Identities=18%  Similarity=0.249  Sum_probs=64.4

Q ss_pred             CCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEE
Q psy3718         353 PEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKV  432 (543)
Q Consensus       353 p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i  432 (543)
                      |..+|.++.+..+++++|.|+|++++....++.+.+|.|+|+.                                     
T Consensus         1 P~~~P~~~~~~~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~-------------------------------------   43 (101)
T d1x4ya1           1 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRP-------------------------------------   43 (101)
T ss_dssp             CCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECC-------------------------------------
T ss_pred             CCCCCcccEEEEEcCCEEEEEEecCcccccccceEEEEEEeee-------------------------------------
Confidence            4568899999999999999999987655555555566555543                                     


Q ss_pred             EEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccccccC
Q psy3718         433 VYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDRVP  505 (543)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~v~  505 (543)
                          .+..  ................+.+.+|+|+ .|.|+|+|              .|..|.|++|+...+.
T Consensus        44 ----~~~~--~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a--------------~n~~G~s~~S~~~~~~   97 (101)
T d1x4ya1          44 ----TDSD--NDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQC--------------FNEGGESEFSNVMICE   97 (101)
T ss_dssp             ----TTSC--SGGGCCCEEEETTCCEEEECSCCTTCEEEEEEEE--------------ECTTCCCCCCCCEEEE
T ss_pred             ----ccce--eeeeeeEEEEcCCeeEEEEcCCCCCCEEEEEEEE--------------EcCCCCCCCCCcEEEE
Confidence                3221  0000000001133344556699999 99999999              9999999988766543

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.12  E-value=3e-10  Score=82.93  Aligned_cols=85  Identities=20%  Similarity=0.293  Sum_probs=67.3

Q ss_pred             CCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEE
Q psy3718         251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQ  330 (543)
Q Consensus       251 ~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~  330 (543)
                      +|.++++...+.+++.|.|.++.     +.+.+|.|.|+..+...  ....+     +.....+.|.+|.|++.|.|+|.
T Consensus         2 aP~~l~v~~~t~~sv~v~W~~p~-----~~~~~Y~v~~~~~~~~~--~~~~~-----~~~~~~~~~~~L~p~t~Y~v~V~   69 (87)
T d1qr4a1           2 NPKDLEVSDPTETTLSLRWRRPV-----AKFDRYRLTYVSPSGKK--NEMEI-----PVDSTSFILRGLDAGTEYTISLV   69 (87)
T ss_dssp             CCEEEEEESCCSSEEEEEEECCS-----SCCSEEEEEEECTTCCE--EEEEE-----CTTCSEEEEESCCSSCEEEEEEE
T ss_pred             cCcCcEEEEecCCEEEEEEECCC-----CCcceeEEEeecCCcce--eEEeC-----CCCcCEEEECCCCcCCEEEEEEE
Confidence            68899999999999999999984     46789999998765432  11222     45778999999999999999999


Q ss_pred             EEeCCCCCCCCcceeeec
Q psy3718         331 ALNKLGPGPMSEEVKQYT  348 (543)
Q Consensus       331 a~n~~G~s~~s~~~~~~t  348 (543)
                      |++..|.|+++. ..+.|
T Consensus        70 a~~~~~~s~~~~-~~~~T   86 (87)
T d1qr4a1          70 AEKGRHKSKPTT-IKGST   86 (87)
T ss_dssp             EESSSCBCCCEE-EEEEC
T ss_pred             EEcCCCCccCEE-EEEEc
Confidence            999999886543 34443

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=4.7e-11  Score=88.55  Aligned_cols=85  Identities=18%  Similarity=0.167  Sum_probs=57.8

Q ss_pred             CCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEE
Q psy3718         355 QPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVY  434 (543)
Q Consensus       355 ~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~  434 (543)
                      ++|.++++...++++|.|.|++|     ++.+.+|.|+|+                                        
T Consensus         3 ~aP~n~~~~~~s~~si~l~W~~p-----~~~~~~Y~i~y~----------------------------------------   37 (92)
T d1qg3a1           3 GAPQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYW----------------------------------------   37 (92)
T ss_dssp             CCCEEEEEEECSTTCEEEEEECC-----SSCCCEEEEEEE----------------------------------------
T ss_pred             CcCCCCEEEEccCCEEEEEEEec-----CCCccceEEeee----------------------------------------
Confidence            37889999999999999999976     233455555554                                        


Q ss_pred             eeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcccccc
Q psy3718         435 GPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDRV  504 (543)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~v  504 (543)
                       ............     ......+.+.+|+|+ .|.|+|+|              .|..|.|.+|....+
T Consensus        38 -~~~~~~~~~~~~-----~~~~~~~~i~~L~p~t~Y~~~V~A--------------~n~~G~g~~S~~~~~   88 (92)
T d1qg3a1          38 -IQGDSESEAHLL-----DSKVPSVELTNLYPYCDYEMKVCA--------------YGAQGEGPYSSLVSC   88 (92)
T ss_dssp             -ETTSCGGGCEEE-----EESSSEEEECSCCTTCEEEEEEEE--------------ECSSCBCCCCCCEEE
T ss_pred             -eccccccEEEEe-----cCCccEEEECCCCCCcEEEEEEEE--------------EeCCcCcCCCCCEEE
Confidence             332210001111     133445666699999 99999999              999999988765543

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=2e-10  Score=83.64  Aligned_cols=80  Identities=20%  Similarity=0.321  Sum_probs=65.4

Q ss_pred             CCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEE
Q psy3718         250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVV  329 (543)
Q Consensus       250 ~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V  329 (543)
                      .+|.++++...+.+++.|.|.++     .+.+.+|.|.|+..+....  ...+     .....++.|.+|.|++.|.|+|
T Consensus         2 ~~P~nl~v~~~~~~s~~l~W~~p-----~~~~~~Y~v~~~~~~~~~~--~~~~-----~~~~~~~~~~~L~p~t~Y~v~V   69 (86)
T d1tdqa3           2 DSPRDLMVTASSETSISLIWTKA-----SGPIDHYRITFTPSSGISS--EVTV-----PRDRTSYTLTDLEPGAEYIISI   69 (86)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECC-----CSCCSEEEEEEECSSSCCE--EEEE-----ESSCSEEEECCCCTTCCEEEEE
T ss_pred             ccCCCCEEEEecCCEEEEEEeCC-----CCCccceEEEEecccccce--EEEe-----CCCccEEEECCCccccEEEEEE
Confidence            47899999999999999999997     4568899999987664432  2222     3467899999999999999999


Q ss_pred             EEEeCCCCCCCC
Q psy3718         330 QALNKLGPGPMS  341 (543)
Q Consensus       330 ~a~n~~G~s~~s  341 (543)
                      .|++..|.|.++
T Consensus        70 ~a~~~~~~s~p~   81 (86)
T d1tdqa3          70 TAERGRQQSLES   81 (86)
T ss_dssp             EEEETTEECCCE
T ss_pred             EEEcCCCEECCE
Confidence            999999877654

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.6e-10  Score=86.49  Aligned_cols=92  Identities=23%  Similarity=0.342  Sum_probs=60.5

Q ss_pred             CCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEE
Q psy3718         352 TPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYK  431 (543)
Q Consensus       352 ~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~  431 (543)
                      .|+ +|.++++...+.+++.|+|++|.  ..+|.+.+|.|.|+.....                     ....+..  ..
T Consensus         2 ~P~-~P~~~~~~~~~~~sv~v~W~~P~--~~~g~i~~Y~i~~~~~~~~---------------------~~~~~~~--~~   55 (103)
T d1qg3a2           2 VPS-EPGRLAFNVVSSTVTQLSWAEPA--ETNGEITAYEVCYGLVNDD---------------------NRPIGPM--KK   55 (103)
T ss_dssp             CCC-CCCCCEEEEEETTEEEEECCCCS--CCSSCCCEEEEEEEEBCTT---------------------SCBCSCC--EE
T ss_pred             cCc-cCCCcEEEEecCCEEEEEEEECc--cCCCCceEEEEEeeccccc---------------------cccccce--EE
Confidence            454 88999999999999999999873  4566777777776543210                     0000000  00


Q ss_pred             EEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcc
Q psy3718         432 VVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCK  500 (543)
Q Consensus       432 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~  500 (543)
                      +.                 ........+.+.+|+|+ .|.|+|+|              .|.+|.|+++.
T Consensus        56 ~~-----------------~~~~~~~~~~i~~L~p~t~Y~~~V~A--------------~n~~G~g~~s~   94 (103)
T d1qg3a2          56 VL-----------------VDNPKNRMLLIENLRESQPYRYTVKA--------------RNGAGWGPERE   94 (103)
T ss_dssp             EE-----------------ECCTTCCEEEECCCCTTCCEEEEEEE--------------EETTEECCCEE
T ss_pred             EE-----------------ecCCCceEEEEeecCCCCEEEEEEEE--------------EcCCccCCCcc
Confidence            00                 00122334555699999 99999999              99999997653

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.11  E-value=1.3e-11  Score=94.51  Aligned_cols=73  Identities=23%  Similarity=0.414  Sum_probs=56.3

Q ss_pred             ceeEeecCCCeEEEEEe-eccCCceEEEccCCeecCCCCC-----CceEEeeeecCCCceeeEEEEeeecCCCc---cEE
Q psy3718          59 RNQTSRRGEPSVLQCEA-KGEKPIGILWNMNNKRLDPKSD-----NRYTIREEILPNGVLSDLSIKRTERGDSA---LFT  129 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~L~i~~~~~~D~G---~Y~  129 (543)
                      .+..+.+|++++|.|.+ .|.|.|.+.|+|++..+.....     .++.+    ..+   ++|.|.+++.+|+|   .|+
T Consensus        10 ~~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~----~~~---~~L~i~~v~~~D~gd~g~Y~   82 (111)
T d1biha2          10 HEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITA----GPD---GNLYFTIVTKEDVSDIYKYV   82 (111)
T ss_dssp             EEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEE----CTT---SCEEEEEECGGGCCSSEEEE
T ss_pred             ccccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeecc----ccc---cccEEeeeEeeccCCceEEE
Confidence            35567899999999997 8999999999999877643322     12222    122   37999999999987   699


Q ss_pred             EEEecccce
Q psy3718         130 CEIKSQKIS  138 (543)
Q Consensus       130 C~a~n~~~s  138 (543)
                      |.|+|..|+
T Consensus        83 C~A~N~~g~   91 (111)
T d1biha2          83 CTAKNAAVD   91 (111)
T ss_dssp             EEEECTTCS
T ss_pred             EEEEeCCCC
Confidence            999998776

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=3.3e-10  Score=83.30  Aligned_cols=80  Identities=21%  Similarity=0.413  Sum_probs=65.8

Q ss_pred             CCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEE
Q psy3718         250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVV  329 (543)
Q Consensus       250 ~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V  329 (543)
                      +||+++++...+.+++.|+|.++     .+++.+|.|.|+..+..... ...+     ......+.|.+|.|++.|.|+|
T Consensus         3 spP~~l~v~~~~~~si~v~W~~p-----~~~~~~Y~i~~~~~~~~~~~-~~~~-----~~~~~~~~i~~L~p~t~Y~~~V   71 (90)
T d1fnha2           3 SPPRRARVTDATETTITISWRTK-----TETITGFQVDAVPANGQTPI-QRTI-----KPDVRSYTITGLQPGTDYKIYL   71 (90)
T ss_dssp             CCCEEEEEEEECSSEEEEEEECC-----SSCCCCEEEEEEESSSSCCE-EEEC-----CTTCSEEEEESCCTTCEEEEEE
T ss_pred             CcCCCCEEEEecCCEEEEEEECC-----CCCCceeEEEEEEccCCceE-EEec-----CCCccEEEeCCCCCCcEEEEEE
Confidence            47999999999999999999987     35689999999887654322 2222     4567899999999999999999


Q ss_pred             EEEeCCCCCCC
Q psy3718         330 QALNKLGPGPM  340 (543)
Q Consensus       330 ~a~n~~G~s~~  340 (543)
                      .|+|..|.|++
T Consensus        72 ~a~~~~g~s~p   82 (90)
T d1fnha2          72 YTLNDNARSSP   82 (90)
T ss_dssp             EEEETTEECCC
T ss_pred             EEEeCCCCcCC
Confidence            99999998763

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.8e-10  Score=83.63  Aligned_cols=86  Identities=17%  Similarity=0.203  Sum_probs=68.2

Q ss_pred             CCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEE
Q psy3718         250 GPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVV  329 (543)
Q Consensus       250 ~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V  329 (543)
                      .+|.++.+...+.+++.|+|.++     .+.+.+|.|.|+..+..  .....+     .....++.|.+|.|++.|.|+|
T Consensus         3 ~~P~~l~~~~~~~~sv~l~W~~p-----~~~~~~Y~v~~~~~~~~--~~~~~~-----~~~~~~~~i~~L~p~t~Y~~~V   70 (93)
T d2cuma1           3 EAPRDLEAKEVTPRTALLTWTEP-----PVRPAGYLLSFHTPGGQ--TQEILL-----PGGITSHQLLGLFPSTSYNARL   70 (93)
T ss_dssp             CCCEEEEEESCCSSCEEEEEECC-----SSCCSEEEEEEECTTSC--EEEEEE-----CSSCSEEEECSCCTTCEEEEEE
T ss_pred             CcCCCCEEEEeCCCEEEEEEEcc-----ccccccEEEEEEccccc--cEEEEE-----CCCccEEEEeCccCCCEEEEEE
Confidence            47889999999999999999997     35688999999876542  111222     4567899999999999999999


Q ss_pred             EEEeCCCCCCCCcceeeec
Q psy3718         330 QALNKLGPGPMSEEVKQYT  348 (543)
Q Consensus       330 ~a~n~~G~s~~s~~~~~~t  348 (543)
                      .|+|..|.|+++. ..++|
T Consensus        71 ~a~~~~g~s~~~~-~~~tT   88 (93)
T d2cuma1          71 QAMWGQSLLPPVS-TSFTT   88 (93)
T ss_dssp             EEEBTTBCCCCEE-EEEEC
T ss_pred             EEEeCCCCCCCEE-EEEEe
Confidence            9999999887653 44544

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.1e-10  Score=86.52  Aligned_cols=84  Identities=12%  Similarity=0.094  Sum_probs=56.0

Q ss_pred             CCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEe
Q psy3718         356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYG  435 (543)
Q Consensus       356 ~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~  435 (543)
                      +|.++++...+++++.|.|++|.  ..++                                         .|.+|.|+|.
T Consensus         3 ~P~~~~v~~~s~~si~l~W~~p~--~~~~-----------------------------------------~i~~Y~v~~~   39 (93)
T d1x4xa1           3 QCKPPQVTCRSATCAQVNWEVPL--SNGT-----------------------------------------DVTEYRLEWG   39 (93)
T ss_dssp             CCCCCCCEEEETTEEEEECCCCS--CSSS-----------------------------------------CCCEEEEEEE
T ss_pred             CCCCCEEEEeCCCeEEEEEEecc--cCCC-----------------------------------------eeEEEEEEEc
Confidence            55667777888899999998762  2233                                         4455555554


Q ss_pred             eCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccccc
Q psy3718         436 PSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDR  503 (543)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~  503 (543)
                      ..+..  .....     ......+.+.+|.|+ .|.|+|+|              .|..|.|++|+...
T Consensus        40 ~~~~~--~~~~~-----~~~~~~~~i~~L~p~t~Y~~~V~A--------------~n~~G~s~~S~~~~   87 (93)
T d1x4xa1          40 GVEGS--MQICY-----CGPGLSYEIKGLSPATTYYCRVQA--------------LSVVGAGPFSEVVA   87 (93)
T ss_dssp             SSTTS--CCEEE-----EESCSEEEEESCCSSCEEEEEEEE--------------ECSSCCCCBCCCEE
T ss_pred             cCCCc--ceEee-----cCCccEEEEcccceeeEEEEEEEE--------------EECCcCcCCCCcEE
Confidence            43332  11111     134445666799999 99999999              99999998876443

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=8.6e-11  Score=89.68  Aligned_cols=93  Identities=16%  Similarity=0.235  Sum_probs=59.9

Q ss_pred             CCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEE
Q psy3718         351 GTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGY  430 (543)
Q Consensus       351 ~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y  430 (543)
                      ..|. +|.++.+...+.++|.|+|.+|.. ..++.+.+|.|+|                                     
T Consensus         9 ~~P~-~P~~l~~~~~~~~sv~lsW~~P~~-~~~~~i~~Y~v~~-------------------------------------   49 (107)
T d1x5fa1           9 PLPS-APRDVVASLVSTRFIKLTWRTPAS-DPHGDNLTYSVFY-------------------------------------   49 (107)
T ss_dssp             CCCC-CCEEEEEEEECSSCEEEEEECCSS-CSSCCSSEEEEEE-------------------------------------
T ss_pred             CCCc-CCCccEEEEecCCEEEEEEECCcc-CCCCceEEEEEEE-------------------------------------
Confidence            3444 789999999999999999997632 2344444555444                                     


Q ss_pred             EEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcccccc
Q psy3718         431 KVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDRV  504 (543)
Q Consensus       431 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~v  504 (543)
                          +..+...+.....    .......+.+.+|.|+ .|.|+|+|              .|..|.|++|....+
T Consensus        50 ----~~~~~~~~~~~~~----~~~~~~~~~~~~L~p~t~Y~~rV~A--------------~n~~G~g~~S~~i~v  102 (107)
T d1x5fa1          50 ----TKEGIARERVENT----SHPGEMQVTIQNLMPATVYIFRVMA--------------QNKHGSGESSAPLRV  102 (107)
T ss_dssp             ----EETTCCCCEEEEC----SSTTCSEEEECSCCTTCEEEEEEEE--------------ECSSCEEEECCCEEE
T ss_pred             ----EeCCCCceEEEEE----eCCCccEEEecCCCCCCEEEEEEEE--------------EeCCCCcCCCCCEEE
Confidence                4433320001000    0123334555699999 99999999              999999987665443

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=6e-11  Score=95.32  Aligned_cols=97  Identities=27%  Similarity=0.278  Sum_probs=73.7

Q ss_pred             CeeeEEEecCCCeEEEEeeCCCCCCC-------CcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCE
Q psy3718         252 PTHIKVEATDQNTLKVSWSPPERDHW-------NGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQ  324 (543)
Q Consensus       252 P~~~~~~~~~~~~i~l~W~~~~~~~~-------~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~  324 (543)
                      +....+..++++++.|+|.+|.....       ...+..|.+.++..+....+.  .+.    .+....+.|.+|.|++.
T Consensus        21 ~~~P~V~~v~~~sv~l~W~~P~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~--~~~----~~~~~~~~i~~L~P~t~   94 (137)
T d1wk0a_          21 IVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYK--SVY----VGEETNITLNDLKPAMD   94 (137)
T ss_dssp             CCCCEEESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCE--EEE----EESCSEEEECSCCTTCE
T ss_pred             CCCCEEEEeEcCEEEEEEeCcCcCCCceeeccccceEEeeEEEEeeCCCCccEE--EEE----ecCccEEEECCCCCCcE
Confidence            34457888999999999999865321       124667888887655443322  221    23567899999999999


Q ss_pred             EEEEEEEEeCCCCCCCCcceeeeccCCCCC
Q psy3718         325 YSVVVQALNKLGPGPMSEEVKQYTAEGTPE  354 (543)
Q Consensus       325 Y~~~V~a~n~~G~s~~s~~~~~~t~~~~p~  354 (543)
                      |.|+|+|.|..|.|+++..+.++|...+|.
T Consensus        95 Y~f~V~A~n~~G~g~~S~~~~~~T~~~~P~  124 (137)
T d1wk0a_          95 YHAKVQAEYNSIKGTPSEAEIFTTLSCEPD  124 (137)
T ss_dssp             ECEEEEEEETTEECCCCCCCCEECCCSSSC
T ss_pred             EEEEEEEEcCCcccCCCCCEEEECCCCCCC
Confidence            999999999999999999999999877765

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=8.6e-11  Score=90.61  Aligned_cols=95  Identities=9%  Similarity=0.041  Sum_probs=60.9

Q ss_pred             cCCCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCccee
Q psy3718         349 AEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIK  428 (543)
Q Consensus       349 ~~~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~  428 (543)
                      .++.|. +|.++++...+.+++.|+|.+|.  +.++.|.+|.|+|+...                               
T Consensus         7 p~~~P~-~P~~~~~~~~~~~sv~l~W~pp~--~~~~~i~~y~v~~~~~~-------------------------------   52 (111)
T d1wisa1           7 PPELPG-PPTNLGISNIGPRSVTLQFRPGY--DGKTSISRWLVEAQVGV-------------------------------   52 (111)
T ss_dssp             CCCCCC-CCEEEEEESCCSSCEEEEEECCC--CCSSCCSEEEEEECBSC-------------------------------
T ss_pred             CCCCCc-CCCCCEEEEcCCCEEEEEEeCCC--CCCCceeEEEEeeeecc-------------------------------
Confidence            345564 78899998889999999999762  34566666666664322                               


Q ss_pred             EEEEEEeeCCCCCCC-CCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccc
Q psy3718         429 GYKVVYGPSDTWYGH-PGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKN  501 (543)
Q Consensus       429 ~Y~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~  501 (543)
                                ...+. ...............+.+.+|+|+ .|.|+|+|              .|.+|.|++|..
T Consensus        53 ----------~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A--------------~N~~G~s~~S~~  103 (111)
T d1wisa1          53 ----------VGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQ--------------VNIVGTSPPSQP  103 (111)
T ss_dssp             ----------CSTTSCCEEEEEEESCTTCSEEEECSCCTTSEECCCCEE--------------ECSSCBCCCCCC
T ss_pred             ----------cCCCcceeeeeeeecccceeEEEeCCCCCCCEEEEEEEE--------------EcCCcCCCCcCC
Confidence                      11000 000000000122334555699999 99999999              999999998753

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.6e-10  Score=85.98  Aligned_cols=91  Identities=12%  Similarity=0.150  Sum_probs=70.4

Q ss_pred             CCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEE
Q psy3718         247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYS  326 (543)
Q Consensus       247 ~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  326 (543)
                      .||++|.++++...+..++.|+|.++.+.   +...+|.|.|+..+....+....     .......+.+.+|.+++.|.
T Consensus         2 ~PP~~P~n~~~~~~~~~si~~~W~p~~~~---~~~~~y~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~~L~~~~~Y~   73 (95)
T d1bqua1           2 LPPEKPKNLSCIVNEGKKMRCEWDGGRET---HLETNFTLKSEWATHKFADCKAK-----RDTPTSCTVDYSTVYFVNIE   73 (95)
T ss_dssp             CCCCCCEEEEEEEETTSCCEEEEECCSCC---SSCCEEEEEEEETTEECCCEECC-----SSCTTEEECSSCCCTTSCEE
T ss_pred             cCcCCCeeeEEEEccCCEEEEEEeCcccC---CCceEEEEEEEEcccceeEeecc-----cccceeeeeeeecCCCcEEE
Confidence            47789999999999999999999998653   34579999998876544332211     14455678889999999999


Q ss_pred             EEEEEEeCCCCCCCCcceee
Q psy3718         327 VVVQALNKLGPGPMSEEVKQ  346 (543)
Q Consensus       327 ~~V~a~n~~G~s~~s~~~~~  346 (543)
                      |+|.|.|..|.+. |..+.+
T Consensus        74 f~V~A~N~~G~s~-S~~v~~   92 (95)
T d1bqua1          74 VWVEAENALGKVT-SDHINF   92 (95)
T ss_dssp             EEEEEEETTEEEE-CCCEEE
T ss_pred             EEEEEEeCCcccc-CCCeec
Confidence            9999999999775 544443

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.2e-09  Score=80.93  Aligned_cols=77  Identities=14%  Similarity=0.228  Sum_probs=61.8

Q ss_pred             CCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEE
Q psy3718         249 SGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVV  328 (543)
Q Consensus       249 ~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~  328 (543)
                      |.+|.+|.+..++.+.+.|+|.++.    .+.+..|.|+|+..+... +.....      .....+++.+|.|++.|+|+
T Consensus         3 P~~P~nl~v~~~~~~~v~l~W~~p~----~~~~~~y~v~y~~~~~~~-~~~~~~------~~~~~~~~~~L~p~t~Y~fr   71 (95)
T d2b5ic1           3 PWAPENLTLHKLSESQLELNWNNRF----LNHCLEHLVQYRTDWDHS-WTEQSV------DYRHKFSLPSVDGQKRYTFR   71 (95)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEECSS----CSTTCEEEEEEEETTCSS-CEEEEE------CSSCEEEECSCCTTSCEEEE
T ss_pred             CcCCCCCEEEEEeCCEEEEEECCCC----CceeEEEEEEEEcCCCce-eeEeee------cccceeEcCCCCCCCEEEEE
Confidence            4689999999999999999999886    345789999999877654 222221      24578999999999999999


Q ss_pred             EEEEeCCC
Q psy3718         329 VQALNKLG  336 (543)
Q Consensus       329 V~a~n~~G  336 (543)
                      |+|.+..+
T Consensus        72 VRa~~~~~   79 (95)
T d2b5ic1          72 VRSRFNPL   79 (95)
T ss_dssp             EEEECCSS
T ss_pred             EEEeeCCC
Confidence            99986654

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.9e-10  Score=85.99  Aligned_cols=87  Identities=14%  Similarity=0.137  Sum_probs=56.8

Q ss_pred             CCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEe
Q psy3718         356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYG  435 (543)
Q Consensus       356 ~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~  435 (543)
                      +|.++++...+.++|.|+|++|.. ..+.                                         .+.+|.+.++
T Consensus         3 ~P~~~~v~~~~~~si~l~W~~p~~-~~~~-----------------------------------------~~~~y~~~~~   40 (96)
T d1x5xa1           3 MPASPVLTKAGITWLSLQWSKPSG-TPSD-----------------------------------------EGISYILEME   40 (96)
T ss_dssp             CCCCCEEEEECSSEEEEECCCCSS-CCSS-----------------------------------------SSCEEEEEEC
T ss_pred             cCCCCEEEEecCCEEEEEEEeecc-cCcc-----------------------------------------eEeeeEEEee
Confidence            677888988999999999997631 1222                                         3444444444


Q ss_pred             eCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccccc
Q psy3718         436 PSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDR  503 (543)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~  503 (543)
                      ..+...+.....     ......+.+.+|+|+ .|.|+|+|              .|..|.|++|....
T Consensus        41 ~~~~~~~~~~~~-----~~~~~~~~v~~L~p~t~Y~~rV~A--------------~n~~G~s~~S~~~~   90 (96)
T d1x5xa1          41 EETSGYGFKPKY-----DGEDLAYTVKNLRRSTKYKFKVIA--------------YNSEGKSNPSEVVE   90 (96)
T ss_dssp             CSSSSCCCEEEE-----EESCSEEEEESCCSSCEEEEEEEE--------------ECSSCEEEECCCEE
T ss_pred             eccceeeeEEee-----cCCCCEEEECCCCCCCEEEEEEEE--------------EcCCcEeCCCCCEE
Confidence            333221111111     133444666699999 99999999              99999998876444

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.04  E-value=2.3e-10  Score=83.79  Aligned_cols=79  Identities=19%  Similarity=0.300  Sum_probs=54.2

Q ss_pred             CCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEE
Q psy3718         355 QPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVY  434 (543)
Q Consensus       355 ~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~  434 (543)
                      ++|.++++..++++++.|.|++|     .+.+.+|.|+|                                         
T Consensus         2 ~~P~~l~v~~v~~~s~~l~W~~~-----~~~~~~Y~i~~-----------------------------------------   35 (88)
T d1qr4a2           2 GSPKGISFSDITENSATVSWTPP-----RSRVDSYRVSY-----------------------------------------   35 (88)
T ss_dssp             CCCSCEEEESCCSSCEEEEECCC-----SSCCSEEEEEE-----------------------------------------
T ss_pred             cCCcceEEEEecCCEEEEEEEcc-----cEeeceEEEEE-----------------------------------------
Confidence            37889999999999999999976     23344555555                                         


Q ss_pred             eeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCC
Q psy3718         435 GPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDK  498 (543)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~  498 (543)
                      +..+..  ......   .......+.+.||.|+ .|.|+|.|              +|..|.|+|
T Consensus        36 ~~~~~~--~~~~~~---~~~~~~~~~i~~L~p~t~Y~~~V~a--------------~~~~g~s~p   81 (88)
T d1qr4a2          36 VPITGG--TPNVVT---VDGSKTRTKLVKLVPGVDYNVNIIS--------------VKGFEESEP   81 (88)
T ss_dssp             EETTCC--CCEEEE---EETTCCEEEECSCCSSCEEEEEEEE--------------EETTEECCC
T ss_pred             EeccCC--ceEEEE---ecCCccEEEECCCCCCCEEEEEEEE--------------EeCCCCcCC
Confidence            443331  111111   0133445666799999 99999999              999999875

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=6.5e-10  Score=85.66  Aligned_cols=90  Identities=27%  Similarity=0.446  Sum_probs=69.2

Q ss_pred             CCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEE
Q psy3718         248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSV  327 (543)
Q Consensus       248 p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~  327 (543)
                      .+.+|.++++... .+++.|.|.++...  ++.+.+|.|+|+..+...  ....     .......+++.+|.|++.|.|
T Consensus        20 vP~~P~~~~~~~~-~~si~v~W~~p~~~--~g~i~~Y~i~~~~~~~~~--~~~~-----~~~~~~~~~i~~L~p~t~Y~~   89 (113)
T d1x5ia1          20 VPEVPSSLHVRPL-VTSIVVSWTPPENQ--NIVVRGYAIGYGIGSPHA--QTIK-----VDYKQRYYTIENLDPSSHYVI   89 (113)
T ss_dssp             CCCSCSEEEEEEE-TTEEEEEEECCSCT--TBCCCEEEEEECSSCGGG--EEEE-----CCTTCCEEEECSCCSSCEECC
T ss_pred             CCCCCEeeeeeeC-CCEEEEEEEccccC--CccEEEEEEEeeeccccc--eeee-----eeCCccEEEEeccccCcEEEE
Confidence            3468899998764 67999999998766  789999999997654332  1111     145678999999999999999


Q ss_pred             EEEEEeCCCCCCCCcceeeec
Q psy3718         328 VVQALNKLGPGPMSEEVKQYT  348 (543)
Q Consensus       328 ~V~a~n~~G~s~~s~~~~~~t  348 (543)
                      +|+|+|..|.|+++. ..++|
T Consensus        90 ~V~A~n~~G~g~~~~-~~~~T  109 (113)
T d1x5ia1          90 TLKAFNNVGEGIPLY-ESAVT  109 (113)
T ss_dssp             EEEEECSSCBCCCCC-CCEEC
T ss_pred             EEEEECCCcCCCCee-eEEEe
Confidence            999999999997543 33444

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.1e-10  Score=87.54  Aligned_cols=28  Identities=14%  Similarity=-0.008  Sum_probs=24.2

Q ss_pred             CccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCC
Q psy3718         457 GRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDK  498 (543)
Q Consensus       457 ~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~  498 (543)
                      ..+.+.+|.|+ .|.|+|+|              .|.+|.|++
T Consensus        74 ~~~~i~~L~p~t~Y~~~V~A--------------~n~~G~g~~  102 (113)
T d1x5ia1          74 RYYTIENLDPSSHYVITLKA--------------FNNVGEGIP  102 (113)
T ss_dssp             CEEEECSCCSSCEECCEEEE--------------ECSSCBCCC
T ss_pred             cEEEEeccccCcEEEEEEEE--------------ECCCcCCCC
Confidence            34555699999 99999999              999999976

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.4e-10  Score=86.33  Aligned_cols=60  Identities=13%  Similarity=0.197  Sum_probs=38.0

Q ss_pred             CCCcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcc
Q psy3718         422 TANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCK  500 (543)
Q Consensus       422 ~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~  500 (543)
                      ..+|.|.+|.|+|+..+..  ......   .......+.+.+|.|+ .|.|+|+|              .|..|.|+++.
T Consensus        25 ~~~g~i~~Y~i~~~~~~~~--~~~~~~---~~~~~~~~~i~~L~p~t~Y~~~V~A--------------~n~~G~g~~s~   85 (94)
T d2dn7a1          25 ELPGELLGYRLQYCRADEA--RPNTID---FGKDDQHFTVTGLHKGTTYIFRLAA--------------KNRAGLGEEFE   85 (94)
T ss_dssp             SCSSCCCEEEEEEEETTCS--SCEEEE---EETTCCEEEEECCCTTCEEEEEEEE--------------EETTEEEEEEE
T ss_pred             CCCCceEEEEEEEEEcCCC--CcEEEE---cCCCccEEEEEccCCeeEEEEEEEE--------------EcCCcCCCCcc
Confidence            3345555555555554432  111111   1134445666799999 99999999              99999998654

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.4e-10  Score=84.67  Aligned_cols=84  Identities=18%  Similarity=0.260  Sum_probs=52.3

Q ss_pred             CCCCCCCcEEEEeccC-eEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEE
Q psy3718         353 PEQPPQDNTCTTLTSQ-TIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYK  431 (543)
Q Consensus       353 p~~~P~~~~~~~~~~~-~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~  431 (543)
                      |..||.++++....++ ++.|.|++|.    ++.|                                         ++|+
T Consensus         1 P~~PP~~l~v~~~~~ts~i~v~W~~p~----~~~i-----------------------------------------~~Y~   35 (94)
T d1fnfa1           1 PLSPPTNLHLEANPDTGVLTVSWERST----TPDI-----------------------------------------TGYR   35 (94)
T ss_dssp             CCCCCEEEEEEECSSSSCEEEEEECCS----CSSC-----------------------------------------CEEE
T ss_pred             CCCcCcCcEEEEecCCCEEEEEeeCCC----CCCe-----------------------------------------eEEE
Confidence            4458899999877654 5889998762    1124                                         4455


Q ss_pred             EEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCC
Q psy3718         432 VVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDK  498 (543)
Q Consensus       432 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~  498 (543)
                      |.|+..++..+......   .......+.+.+|+|| .|.|+|.|              .+..|+|++
T Consensus        36 v~y~~~~~~~~~~~~~~---~~~~~~~~~i~~L~p~t~Y~v~V~a--------------~~~~g~s~p   86 (94)
T d1fnfa1          36 ITTTPTNGQQGNSLEEV---VHADQSSCTFDNLSPGLEYNVSVYT--------------VKDDKESVP   86 (94)
T ss_dssp             EEEEETTTCSSCCEEEE---ECTTCCEEECCCCCTTSCEEEEEEE--------------EETTEECCC
T ss_pred             EEEEEecccCceEEEEE---eCCCccEEEECCCCCCCEEEEEEEE--------------EcCCCEeCC
Confidence            44444332211111111   0023334556699999 99999999              999998865

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.8e-10  Score=85.02  Aligned_cols=94  Identities=17%  Similarity=0.147  Sum_probs=63.7

Q ss_pred             CCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEE
Q psy3718         353 PEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKV  432 (543)
Q Consensus       353 p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i  432 (543)
                      |..||.++++..++++++.|+|++|+...                                       ....+.+..|.|
T Consensus         1 P~~pP~~v~~~~~s~tsi~v~W~~p~~~~---------------------------------------~~~~~~~~~y~v   41 (100)
T d1x5ja1           1 PMMPPVGVQASILSHDTIRITWADNSLPK---------------------------------------HQKITDSRYYTV   41 (100)
T ss_dssp             CCCCCEEEEEEEEETTEEEEEEECTTSCS---------------------------------------SSCCCSSCEEEE
T ss_pred             CCCCCcCeEEEEecCCEEEEEEcCCcccc---------------------------------------ccceeeEEEEEE
Confidence            44588999999999999999999874321                                       111233455666


Q ss_pred             EEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcccccc
Q psy3718         433 VYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDRV  504 (543)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~v  504 (543)
                      .|...+..........     .....+.+.||.|+ .|.|+|+|              .|..|.|.+|....+
T Consensus        42 ~~~~~~~~~~~~~~~~-----~~~~~~~i~~L~p~t~Y~~~V~a--------------~n~~g~s~~S~~~~~   95 (100)
T d1x5ja1          42 RWKTNIPANTKYKNAN-----ATTLSYLVTGLKPNTLYEFSVMV--------------TKGRRSSTWSMTAHG   95 (100)
T ss_dssp             EECBSSSSSCCCEECC-----BCSSEEEEESCCTTCEECCEEEE--------------ECSSCBCCCCCCCCE
T ss_pred             EeeecCCCcceeEecC-----CCccEEEECCCCCCCEEEEEEEE--------------EeCCcCcCCCCeEEE
Confidence            6655444311111111     33444566699999 99999999              999999998876554

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.9e-09  Score=82.12  Aligned_cols=99  Identities=17%  Similarity=0.132  Sum_probs=71.2

Q ss_pred             CCCCCCeeeEEEecCCCeEEEEeeCCCCCCC----CcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCC
Q psy3718         247 APSGPPTHIKVEATDQNTLKVSWSPPERDHW----NGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTY  322 (543)
Q Consensus       247 ~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~----~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  322 (543)
                      +.+.+|.++.+. .+.+.+.|+|.+|.....    ...+..|.|.|+..+...........    ......+.+.+|.|+
T Consensus         4 vkP~pP~nl~v~-~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~L~p~   78 (114)
T d2gysa2           4 VQPPEPRDLQIS-TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLS----NTSQATLGPEHLMPS   78 (114)
T ss_dssp             BCCCCCEEEEEE-EETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTCEEEEE----SSSEEEECTTTCCTT
T ss_pred             ccCCcCCCeEEE-EeCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceEEEEEeec----cCceEEEEeCCCCCC
Confidence            345699999986 456789999999865421    23456899999987765433222211    346678899999999


Q ss_pred             CEEEEEEEEEeCCCC------CCCCcceeeeccC
Q psy3718         323 TQYSVVVQALNKLGP------GPMSEEVKQYTAE  350 (543)
Q Consensus       323 t~Y~~~V~a~n~~G~------s~~s~~~~~~t~~  350 (543)
                      +.|.|+|+|.|..|.      |.+|.++.+.|.+
T Consensus        79 t~Y~~rVRa~~~~g~~~~g~wS~WS~~v~~~t~p  112 (114)
T d2gysa2          79 STYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQP  112 (114)
T ss_dssp             CEEEEEEEEEECTTSSCCBCCCCCCCCEEEECCC
T ss_pred             cEEEEEEEEEeCCCCCCCCCccCCcCCEeeeCcC
Confidence            999999999999885      4667778887743

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.2e-10  Score=85.38  Aligned_cols=35  Identities=6%  Similarity=-0.047  Sum_probs=28.7

Q ss_pred             CCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccccc
Q psy3718         455 PRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDR  503 (543)
Q Consensus       455 ~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~  503 (543)
                      ....+.+.+|+|+ .|.|+|+|              .|..|.|++|....
T Consensus        56 ~~~~~~v~~L~p~t~Y~frV~A--------------~N~~G~s~~S~~~~   91 (97)
T d2crza1          56 SEVECTVSSLLPGKTYSFRLRA--------------ANKMGFGPFSEKCD   91 (97)
T ss_dssp             SCSEEEEESCCTTCEEEECCEE--------------ECSSCBCCCCCCEE
T ss_pred             CceEEEEcCCCCCEEEEEEEEE--------------ecCCeEcCCcCCCe
Confidence            3344566699999 99999999              99999999876544

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=5.1e-10  Score=88.21  Aligned_cols=105  Identities=17%  Similarity=0.235  Sum_probs=69.4

Q ss_pred             eccCCCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcc
Q psy3718         347 YTAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGV  426 (543)
Q Consensus       347 ~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~  426 (543)
                      .+.+++|..+|.++++...+.++|.|+|++|+....++.+.+|.+.+.........                    ....
T Consensus         8 ~s~e~~P~~~P~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~--------------------~~~~   67 (125)
T d1uena_           8 HSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKR--------------------NRRH   67 (125)
T ss_dssp             CSCCCCCCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCS--------------------TTCC
T ss_pred             cccCcCCCCCCcccEEEEecCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCccc--------------------eeec
Confidence            45678888899999999999999999999885444567777777776543210000                    0000


Q ss_pred             eeEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccccc
Q psy3718         427 IKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDR  503 (543)
Q Consensus       427 i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~  503 (543)
                      +.....                  ........+.+.+|.|+ .|.|+|+|              .|..|.|.+|....
T Consensus        68 ~~~~~~------------------~~~~~~~~~~i~~L~p~t~Y~~~V~A--------------~n~~G~g~~S~~~~  113 (125)
T d1uena_          68 IEKKIL------------------TFQGSKTHGMLPGLEPFSHYTLNVRV--------------VNGKGEGPASPDRV  113 (125)
T ss_dssp             CCEEEE------------------EEESSCSEEEEESCCSSCEEEEEEEE--------------EESSCEEEECCCEE
T ss_pred             ccceEE------------------EeCCCccEEEECCCCCCCEEEEEEEE--------------EeCCcccCCCCCEE
Confidence            000000                  00123344666699999 99999999              99999988765433

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.4e-09  Score=82.51  Aligned_cols=94  Identities=21%  Similarity=0.315  Sum_probs=69.3

Q ss_pred             CCCCeeeEEEecC------CCeEEEEeeCCCCCC--CCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCC
Q psy3718         249 SGPPTHIKVEATD------QNTLKVSWSPPERDH--WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLK  320 (543)
Q Consensus       249 ~~~P~~~~~~~~~------~~~i~l~W~~~~~~~--~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~  320 (543)
                      |.||.++.+....      .+++.|+|++|....  .+..+..|+|+|+..+...+   ..+.    ......+.|.+|.
T Consensus         1 PdPP~~l~~t~~~~s~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~~w---~~~~----~~~~~~~~i~~L~   73 (106)
T d1axib2           1 PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKW---KMMD----PILTTSVPVYSLK   73 (106)
T ss_dssp             CCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCSSC---EECC----CBSSSEEEEEEEE
T ss_pred             CcCCCCceeeEeeeccccccCeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCccc---eeee----ecccceEEECCCC
Confidence            3588898886432      347999999986532  13357889999998876543   2221    2355799999999


Q ss_pred             CCCEEEEEEEEEeCCC--CCCCCcceeeecc
Q psy3718         321 TYTQYSVVVQALNKLG--PGPMSEEVKQYTA  349 (543)
Q Consensus       321 p~t~Y~~~V~a~n~~G--~s~~s~~~~~~t~  349 (543)
                      +++.|.|+|+|.+..|  .|++|+.+.++++
T Consensus        74 ~~t~Y~frVRa~~~~~g~ws~wS~~v~v~~P  104 (106)
T d1axib2          74 VDKEYEVRVRSKQRNSGNYGEFSEVLYVTLP  104 (106)
T ss_dssp             TTSCEEEEEEEEETTSSCCCCCCCCEEECCC
T ss_pred             CCCEEEEEEEEEECCCCCCCCCCCCEEEECC
Confidence            9999999999998665  4888888887764

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.5e-10  Score=83.83  Aligned_cols=79  Identities=22%  Similarity=0.325  Sum_probs=53.4

Q ss_pred             CCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEe
Q psy3718         356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYG  435 (543)
Q Consensus       356 ~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~  435 (543)
                      +|.++++..++.+++.|+|++|.     +.+.+|+|.|+                                         
T Consensus         3 ~P~~l~v~~vt~~sv~l~W~~p~-----~~~~~Y~i~~~-----------------------------------------   36 (89)
T d1fnfa3           3 SPTGIDFSDITANSFTVHWIAPR-----ATITGYRIRHH-----------------------------------------   36 (89)
T ss_dssp             CCEEEEEESCCSSEEEEEEECCS-----SCCSEEEEEEE-----------------------------------------
T ss_pred             cCcCCEEEEecCCEEEEEEEeCC-----CEEeeEEEEEE-----------------------------------------
Confidence            78899999999999999999762     33555555554                                         


Q ss_pred             eCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCC
Q psy3718         436 PSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDK  498 (543)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~  498 (543)
                      ..+.. .......   .......+.+.+|+|+ .|.|+|+|              .+..|.|+|
T Consensus        37 ~~~~~-~~~~~~~---v~~~~~~~~i~~L~p~t~Y~~~V~a--------------~~~~g~s~p   82 (89)
T d1fnfa3          37 PEHFS-GRPREDR---VPHSRNSITLTNLTPGTEYVVSIVA--------------LNGREESPL   82 (89)
T ss_dssp             CSCCS-SCCEEEE---EETTCCEEEEESCCTTCEEEEEEEE--------------EETTEECCC
T ss_pred             ECCCC-CceEEEE---ECCCccEEEECCCcccCEEEEEEEE--------------EcCCcCcCC
Confidence            33221 1111111   0133445566699999 99999999              999998865

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=3.3e-10  Score=83.31  Aligned_cols=78  Identities=19%  Similarity=0.226  Sum_probs=53.0

Q ss_pred             CCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEe
Q psy3718         356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYG  435 (543)
Q Consensus       356 ~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~  435 (543)
                      ||.++++...+.+++.|+|.+|.     +.+.+|+|+|                                         .
T Consensus         4 pP~~l~v~~~~~~si~v~W~~p~-----~~~~~Y~i~~-----------------------------------------~   37 (90)
T d1fnha2           4 PPRRARVTDATETTITISWRTKT-----ETITGFQVDA-----------------------------------------V   37 (90)
T ss_dssp             CCEEEEEEEECSSEEEEEEECCS-----SCCCCEEEEE-----------------------------------------E
T ss_pred             cCCCCEEEEecCCEEEEEEECCC-----CCCceeEEEE-----------------------------------------E
Confidence            78999999999999999999761     3344555554                                         4


Q ss_pred             eCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCC
Q psy3718         436 PSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDK  498 (543)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~  498 (543)
                      ..++.  ......   .......+.+.+|+|| .|.|+|+|              .|..|.|.+
T Consensus        38 ~~~~~--~~~~~~---~~~~~~~~~i~~L~p~t~Y~~~V~a--------------~~~~g~s~p   82 (90)
T d1fnha2          38 PANGQ--TPIQRT---IKPDVRSYTITGLQPGTDYKIYLYT--------------LNDNARSSP   82 (90)
T ss_dssp             ESSSS--CCEEEE---CCTTCSEEEEESCCTTCEEEEEEEE--------------EETTEECCC
T ss_pred             EccCC--ceEEEe---cCCCccEEEeCCCCCCcEEEEEEEE--------------EeCCCCcCC
Confidence            43321  111111   0023444566699999 99999999              999999875

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.4e-10  Score=91.48  Aligned_cols=98  Identities=18%  Similarity=0.235  Sum_probs=73.4

Q ss_pred             CCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceE------------------EEEeeeccCCcee
Q psy3718         251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLF------------------ETVDFSKEEGKEH  312 (543)
Q Consensus       251 ~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~------------------~~~~~~~~~~~~~  312 (543)
                      .|.++.+...++++|.|+|++|.... ++.+.+|.|.|+..........                  .............
T Consensus         4 ~plnl~~~~~sstsv~lsW~pP~~~~-~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (125)
T d2dtge3           4 ELLKFSYIRTSFDKILLRWEPYWPPD-FRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHP   82 (125)
T ss_dssp             CBCCCSEEEECSSCEEEECCCCCSSS-CCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCC
T ss_pred             CCEEEEEEEecCCEEEEEEeCCCccC-CCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCccC
Confidence            57799999999999999999986543 5789999999977543211100                  0111112245668


Q ss_pred             EEEECCCCCCCEEEEEEEEEeCCCC-----CCCCcceeeecc
Q psy3718         313 HLTLSSLKTYTQYSVVVQALNKLGP-----GPMSEEVKQYTA  349 (543)
Q Consensus       313 ~~~i~~L~p~t~Y~~~V~a~n~~G~-----s~~s~~~~~~t~  349 (543)
                      ++.|.+|+|++.|.|+|+|+|..|.     |+.|+.+.++|.
T Consensus        83 ~~~l~~L~p~T~Y~~~V~A~n~~G~~~~~~g~~S~~v~~~T~  124 (125)
T d2dtge3          83 GWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTD  124 (125)
T ss_dssp             EEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCC
T ss_pred             EEEECCCccCCEEEEEEEEEeCCCccCCCCCCCcccEEEEcC
Confidence            8999999999999999999999994     678888888774

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=6.1e-09  Score=78.86  Aligned_cols=95  Identities=19%  Similarity=0.163  Sum_probs=68.3

Q ss_pred             CCCCCeeeEEEecC-CCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEE
Q psy3718         248 PSGPPTHIKVEATD-QNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYS  326 (543)
Q Consensus       248 p~~~P~~~~~~~~~-~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  326 (543)
                      .+.||.++.+.... ++.+.+.|.+|.... ......|.|+|+..+..........     ....+++.|.+|.|++.|.
T Consensus         4 k~dPP~nl~v~~~~~~~~l~v~W~~P~~~~-~~~~~~Y~v~y~~~~~~~~~~~~~~-----~~~~t~~~i~~L~p~t~Y~   77 (105)
T d1erna2           4 LLDAPVGLVARLADESGHVVLRWLPPPETP-MTSHIRYEVDVSAGNGAGSVQRVEI-----LEGRTECVLSNLRGRTRYT   77 (105)
T ss_dssp             CCCCCEEEEEEECCC-CCEEEEEECSSSCS-CGGGEEEEEEEEEC-CCCEEEEEEE-----CTTCCEEEECSCCSSCEEE
T ss_pred             ccCCCCCCEEEEecCCCcEEEEeeeccccc-cceEEEEEEEEecCCCCCceEEEee-----cCCccEEEEeCCCCCcEEE
Confidence            35689999998764 567999999886543 6677899999998865543322222     3456789999999999999


Q ss_pred             EEEEEEeCC--C---CCCCCcceeeec
Q psy3718         327 VVVQALNKL--G---PGPMSEEVKQYT  348 (543)
Q Consensus       327 ~~V~a~n~~--G---~s~~s~~~~~~t  348 (543)
                      |+|+|.+..  +   .|.+|.++.+.|
T Consensus        78 ~rVRar~~~~~~~G~WSeWS~~v~~~t  104 (105)
T d1erna2          78 FAVRARMAEPSFGGFWSAWSEPVSLLT  104 (105)
T ss_dssp             EEEEEEECSSSCCBCCCCCCCCEEEEC
T ss_pred             EEEEEEECCCCCCCCCCCCCCCEEeeC
Confidence            999998653  2   345666666665

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=6.4e-10  Score=82.75  Aligned_cols=81  Identities=16%  Similarity=0.088  Sum_probs=54.3

Q ss_pred             CCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEe
Q psy3718         356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYG  435 (543)
Q Consensus       356 ~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~  435 (543)
                      +|.++++...+.+++.|+|.+|.    ++.+.+|+|+|+.                                        
T Consensus         8 ~P~~l~v~~~t~~si~l~W~~p~----~~~i~~Y~v~~~~----------------------------------------   43 (95)
T d2fnba_           8 QLTDLSFVDITDSSIGLRWTPLN----SSTIIGYRITVVA----------------------------------------   43 (95)
T ss_dssp             CCTTCEEECCCSSCEEEECCCCC----CSSCCEEEEEEEE----------------------------------------
T ss_pred             cCCCeEEEEEcCCEEEEEEEecC----CceEEeEEEEEEE----------------------------------------
Confidence            78899999999999999999762    2345555555543                                        


Q ss_pred             eCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCc
Q psy3718         436 PSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKC  499 (543)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~  499 (543)
                       .++. .......   .......+.+.||+|+ .|.|+|+|              .|..|.|+++
T Consensus        44 -~~~~-~~~~~~~---~~~~~t~~~i~~L~p~t~Y~~~V~a--------------~~~~g~s~p~   89 (95)
T d2fnba_          44 -AGEG-IPIFEDF---VDSSVGYYTVTGLEPGIDYDISVIT--------------LINGGESAPT   89 (95)
T ss_dssp             -ETSC-CEEEEEE---CCSSCSEEEECCCCTTSEEEEEEEE--------------EETTEECCCC
T ss_pred             -eecc-ceEEEEE---eCCCCeEEEEecccCCEEEEEEEEE--------------EeCCcEeCCE
Confidence             3221 0000000   0023344556699999 99999999              9999998764

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=6.7e-11  Score=91.88  Aligned_cols=101  Identities=28%  Similarity=0.352  Sum_probs=62.6

Q ss_pred             eeeccCCCCCCCCCCcEEEE-eccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCC
Q psy3718         345 KQYTAEGTPEQPPQDNTCTT-LTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITA  423 (543)
Q Consensus       345 ~~~t~~~~p~~~P~~~~~~~-~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~  423 (543)
                      .|+|.+..|+.+|.++.+.. .+++++.|+|++|.....++.                                     .
T Consensus         2 ~~~T~~~~pp~pP~~v~v~~~~s~~si~vsW~PP~~~~~~~~-------------------------------------~   44 (117)
T d2cspa1           2 EFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLS-------------------------------------N   44 (117)
T ss_dssp             CCCCCCCCCCCCCEEEEECCCSSTTEEEEEEECCCCCTTSCS-------------------------------------S
T ss_pred             EEEeCCCCCCCCCCccEEEEecCCCEEEEEEcCCCccccCcc-------------------------------------c
Confidence            46777777777999998854 566789999998753322211                                     1


Q ss_pred             CcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCc--cccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcc
Q psy3718         424 NGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGR--NMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCK  500 (543)
Q Consensus       424 ~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~  500 (543)
                      ++.|.+|.+.+....     ....    .....+.  +.+.+|+++ .|.|+|+|              .|..|.|.+|.
T Consensus        45 ~~~i~~Y~v~~~~~~-----~~~~----~~~~~~~~~~~i~~L~~~t~Y~v~V~A--------------~n~~G~s~~S~  101 (117)
T d2cspa1          45 GANVTGYGVYAKGQR-----VAEV----IFPTADSTAVELVRLRSLEAKGVTVRT--------------LSAQGESVDSA  101 (117)
T ss_dssp             SSCEEEEEEESSSSE-----EEEE----CCTTCSEEEEESHHHHHHTCSCBEEEE--------------EESSCCCCCCS
T ss_pred             ccceEEEEEEeeccc-----ceee----eeeccceeeeeccCCCCCcEEEEEEEE--------------EcCCCcCCCCC
Confidence            223333433221100     0000    0022333  345599999 99999999              99999998887


Q ss_pred             ccccC
Q psy3718         501 NDRVP  505 (543)
Q Consensus       501 ~~~v~  505 (543)
                      ...+.
T Consensus       102 ~v~i~  106 (117)
T d2cspa1         102 VAAVP  106 (117)
T ss_dssp             CBCCC
T ss_pred             CEEee
Confidence            66554

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.9e-10  Score=87.95  Aligned_cols=89  Identities=12%  Similarity=0.087  Sum_probs=56.9

Q ss_pred             CCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEE
Q psy3718         355 QPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVY  434 (543)
Q Consensus       355 ~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~  434 (543)
                      .||+++.+. .+.++|.|.|++|                                           ...++.|.+|.|+|
T Consensus         9 sPP~~~~~~-~t~~si~l~W~pp-------------------------------------------~~~~~~i~~Y~v~~   44 (108)
T d1v5ja_           9 SPPRGLVAV-RTPRGVLLHWDPP-------------------------------------------ELVPKRLDGYVLEG   44 (108)
T ss_dssp             CCCEEEEEE-ECSSSEEEEEECC-------------------------------------------SCCSSCCCBEEEEE
T ss_pred             CcCCCeEEE-EcCCEEEEEEEec-------------------------------------------ccCCCceeEEEEEe
Confidence            478888774 4677888888876                                           22344455555555


Q ss_pred             eeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccccccC
Q psy3718         435 GPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDRVP  505 (543)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~v~  505 (543)
                      +..+..   ...+. .........+.+.+|.|+ .|.|+|+|              .|..|.|+++....+.
T Consensus        45 ~~~~~~---~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~rV~A--------------~n~~g~s~~S~~~~~~   98 (108)
T d1v5ja_          45 RQGSQG---WEVLD-PAVAGTETELLVPGLIKDVLYEFRLVA--------------FAGSFVSDPSNTANVS   98 (108)
T ss_dssp             EETTCC---CEEEE-EEECSSCCEEECCCCCTTSCEECCBEE--------------EETTEEEEECSCCCCC
T ss_pred             eeeeee---eeecc-ccccceeeeEEEEeccCCcEEEEEEEE--------------EeCCCEeCCcCceEEE
Confidence            544332   11110 001123344556699999 99999999              9999999987655543

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.4e-10  Score=86.14  Aligned_cols=32  Identities=9%  Similarity=0.014  Sum_probs=27.4

Q ss_pred             ccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccccc
Q psy3718         458 RNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDR  503 (543)
Q Consensus       458 ~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~  503 (543)
                      .+.+.+|.|+ .|.|+|+|              .|.+|.|++|+...
T Consensus        63 ~~~i~~L~p~t~Y~frV~A--------------~N~~G~g~~S~~~~   95 (101)
T d2haza1          63 IVTIVGLKPETTYAVRLAA--------------LNGKGLGEISAASE   95 (101)
T ss_dssp             EEEECSCCTTCEEEEEEEE--------------EETTEECCCCCCEE
T ss_pred             EEEecCCCCCeEEEEEEEE--------------EeCCcCcCCCCcee
Confidence            3556699999 99999999              99999999887544

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=6.3e-10  Score=84.41  Aligned_cols=88  Identities=17%  Similarity=0.147  Sum_probs=55.8

Q ss_pred             CCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEE
Q psy3718         353 PEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKV  432 (543)
Q Consensus       353 p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i  432 (543)
                      |+.||.++.+..+++++|.|+|.+|. ...+..|                                         .+|.+
T Consensus         2 Pp~pP~~p~~~~~t~~sv~lsW~~P~-~~~g~~i-----------------------------------------~~y~~   39 (104)
T d1bpva_           2 PIDPPGKPVPLNITRHTVTLKWAKPE-YTGGFKI-----------------------------------------TSYIV   39 (104)
T ss_dssp             CCCCCCCCEEEEEETTEEEEECCCCS-CCTTCCC-----------------------------------------SCCEE
T ss_pred             CCCCCCCCEEEEecCCEEEEEEEecc-ccCcceE-----------------------------------------EEEEE
Confidence            45588888998899999999999763 1222334                                         44444


Q ss_pred             EEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCcccccccccc-CCCcc
Q psy3718         433 VYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGE-SDKCK  500 (543)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~-g~~~~  500 (543)
                      +++..+..  ......  ........+.+.||+|+ .|.|+|+|              +|.+|. |++|.
T Consensus        40 ~~~~~~~~--~~~~~~--~~~~~~~~~~i~~L~p~t~Y~frV~A--------------~n~~G~~s~~S~   91 (104)
T d1bpva_          40 EKRDLPNG--RWLKAN--FSNILENEFTVSGLTEDAAYEFRVIA--------------KNAAGAISPPSE   91 (104)
T ss_dssp             EEEETTSC--CCEECC--CSCCCSSEEEECSCCSSCCEEEEEEE--------------ECTTSCEEEEEE
T ss_pred             Eeeccccc--ceeEEE--eeccceeEEEEcCCCCCCEEEEEEEE--------------EECCCCCCCCcC
Confidence            44443332  111000  00133444566699999 99999999              999997 55543

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=4.1e-10  Score=82.67  Aligned_cols=79  Identities=18%  Similarity=0.210  Sum_probs=52.1

Q ss_pred             CCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEe
Q psy3718         356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYG  435 (543)
Q Consensus       356 ~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~  435 (543)
                      +|.++++...+.+++.|+|++|     .+.+.+|.|+|+                                         
T Consensus         3 aP~nl~v~~~~~~s~~l~W~~p-----~~~i~~Y~i~~~-----------------------------------------   36 (89)
T d1fnha3           3 APSNLRFLATTPNSLLVSWQPP-----RARITGYIIKYE-----------------------------------------   36 (89)
T ss_dssp             CCEEEEEEEEETTEEEEEEECC-----SSCCSEEEEEEE-----------------------------------------
T ss_pred             cCcCCEEEEecCCEEEEEEeCC-----CcCCceEEEEEe-----------------------------------------
Confidence            6789999999999999999976     233555555554                                         


Q ss_pred             eCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCC
Q psy3718         436 PSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDK  498 (543)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~  498 (543)
                      ..+.. .......   .......+.+.+|.|+ .|.|+|+|              .|..|.|+|
T Consensus        37 ~~~~~-~~~~~~~---~~~~~~~~~~~~L~p~t~Y~~~V~a--------------~n~~g~S~p   82 (89)
T d1fnha3          37 KPGSP-PREVVPR---PRPGVTEATITGLEPGTEYTIYVIA--------------LKNNQKSEP   82 (89)
T ss_dssp             CTTSC-CEECTTC---CCTTCCEEEEESCCTTCEEEEEEEE--------------ESSSCEEEE
T ss_pred             eccCC-ccEEEEE---cCCCccEEEEEeeeCCCEEEEEEEE--------------EcCCCEeCC
Confidence            33221 0001111   0023334556699999 99999999              999998754

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=5.4e-10  Score=87.63  Aligned_cols=106  Identities=14%  Similarity=0.201  Sum_probs=65.7

Q ss_pred             ccCCCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcce
Q psy3718         348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVI  427 (543)
Q Consensus       348 t~~~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i  427 (543)
                      +..++|. +|.++++.. +.+++.|+|.+|.  ..+|.|.+|.|+|+..+......                    ... 
T Consensus         3 ~~~~~P~-aP~~v~v~~-~~~si~l~W~~P~--~~~g~i~~Y~v~y~~~~~~~~~~--------------------~~~-   57 (123)
T d1wfta_           3 SGSSGPG-APSTVRISK-NVDGIHLSWEPPT--SPSGNILEYSAYLAIRTAQMQDN--------------------PSQ-   57 (123)
T ss_dssp             CSSSCCC-CCEEEEEEE-CSSEEEEEEECCS--SCCSSCCCEEEEEEECSSCCCSC--------------------SCC-
T ss_pred             CCCCCCc-CCcccEEEe-CCCEEEEEecCch--hcCCceEEEEEEEEECCCCCccc--------------------cce-
Confidence            4456676 788998865 6789999999874  55778999999887654211110                    000 


Q ss_pred             eEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccc
Q psy3718         428 KGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKN  501 (543)
Q Consensus       428 ~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~  501 (543)
                      ..+...+.....    ...+.     .....+.+.+|+|+ .|.|+|+|              .|..|.|+.+..
T Consensus        58 ~~~~~~~~~~~~----~~~~~-----~~~~~~~i~~L~p~t~Y~frV~A--------------~N~~G~Gp~S~~  109 (123)
T d1wfta_          58 LVFMRIYCGLKT----SCTVT-----AGQLANAHIDYTSRPAIVFRISA--------------KNEKGYGPATQI  109 (123)
T ss_dssp             CEEEEEEEESCS----EEEEE-----HHHHTTCCCBCSSSCEEEEEEEE--------------BSSSSBCCCEEE
T ss_pred             eeeEEEecCCce----eEeec-----CCccEEEEcCCCCCCEEEEEEEE--------------ecCCcCCCCCCc
Confidence            111111111111    01110     12233455599999 99999999              999999987653

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.96  E-value=4.1e-10  Score=85.85  Aligned_cols=39  Identities=26%  Similarity=0.466  Sum_probs=28.2

Q ss_pred             CCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeC
Q psy3718         356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPS  396 (543)
Q Consensus       356 ~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~  396 (543)
                      ||..+.+..+++++++|+|.+|  .+.++.|.+|.|+|+..
T Consensus         2 PP~~p~v~~~~~~sv~l~W~~P--~~~g~~I~~Y~ie~~~~   40 (107)
T d2ic2a1           2 PPTPPNVTRLSDESVMLRWMVP--RNDGLPIVIFKVQYRMV   40 (107)
T ss_dssp             CCCCCEEEECC---EEEEEEEE--CCSSCCEEEEEEEEEEC
T ss_pred             cCcCCEEEEEECCEEEEEEEeC--ccccCCceEEEEEEEec
Confidence            5566678888999999999987  35567889999988654

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=98.96  E-value=8.7e-10  Score=80.45  Aligned_cols=79  Identities=20%  Similarity=0.260  Sum_probs=57.1

Q ss_pred             CCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEE
Q psy3718         355 QPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVY  434 (543)
Q Consensus       355 ~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~  434 (543)
                      .+|.++++...+.+++.|+|++|.   .++.+.+|.|++...                                      
T Consensus         5 ~~P~~l~~~~~~~~sv~lsW~~p~---~~~~i~~Y~i~~~~~--------------------------------------   43 (88)
T d1k85a_           5 TAPTNLASTAQTTSSITLSWTAST---DNVGVTGYDVYNGTA--------------------------------------   43 (88)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECCS---CCSSEEEEEEEESSS--------------------------------------
T ss_pred             CCCCCcEEEEecCCEEEEEEeCCC---CCCCEEEEEEEccce--------------------------------------
Confidence            488999999999999999999762   334566666654110                                      


Q ss_pred             eeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccc-cCCCccccc
Q psy3718         435 GPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRG-ESDKCKNDR  503 (543)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G-~g~~~~~~~  503 (543)
                                .     ........+.+.+|+|+ .|.|+|+|              .|..| .|++|..+.
T Consensus        44 ----------~-----~~~~~~t~~~~~~L~p~t~Y~~~V~A--------------~n~~G~~s~~S~~v~   85 (88)
T d1k85a_          44 ----------L-----ATTVTGTTATISGLAADTSYTFTVKA--------------KDAAGNVSAASNAVS   85 (88)
T ss_dssp             ----------E-----EEEESSSEEEECCCCSSCEEEEEEEE--------------EETTTEECCCCCCEE
T ss_pred             ----------E-----EEecCCCEEEECCCCCCCEEEEEEEE--------------EECCCCcCCCCcCEE
Confidence                      0     00134455666799999 99999999              99999 688776544

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=6.9e-10  Score=81.81  Aligned_cols=80  Identities=21%  Similarity=0.308  Sum_probs=52.5

Q ss_pred             CCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEe
Q psy3718         356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYG  435 (543)
Q Consensus       356 ~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~  435 (543)
                      ||.++++...+.+++.|.|++|+    ++.+.+|.|                                         .|+
T Consensus         3 pP~~l~~~~~~~~sv~l~W~~p~----~~~~~~y~v-----------------------------------------~y~   37 (91)
T d1fnfa2           3 PPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLV-----------------------------------------RYS   37 (91)
T ss_dssp             CCEEEEEESCCSSCEEEEEECCT----TCCCSEEEE-----------------------------------------EEE
T ss_pred             cCCceEEEEeCCCEEEEEEEecC----CCCcceeEE-----------------------------------------EEE
Confidence            67899998889999999999762    233444444                                         444


Q ss_pred             eCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCC
Q psy3718         436 PSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDK  498 (543)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~  498 (543)
                      ..++. .......   .......+.+.+|+|+ .|.|+|+|              .+..|.|++
T Consensus        38 ~~~~~-~~~~~~~---~~~~~~~~~i~~L~p~t~Y~~~V~a--------------~~~~g~S~p   83 (91)
T d1fnfa2          38 PVKNE-EDVAELS---ISPSDNAVVLTNLLPGTEYVVSVSS--------------VYEQHESTP   83 (91)
T ss_dssp             ETTCT-TCCEEEE---ECTTCCEEEECSCCTTCEEEEEEEE--------------EETTEECCC
T ss_pred             ECCCC-ccEEEEE---eCCCceEEEEeceeCCCEEEEEEEE--------------EcCCCCCCC
Confidence            43332 1111111   0023334556699999 99999999              999998864

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.94  E-value=8.6e-10  Score=81.50  Aligned_cols=80  Identities=14%  Similarity=0.164  Sum_probs=52.7

Q ss_pred             CCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEe
Q psy3718         356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYG  435 (543)
Q Consensus       356 ~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~  435 (543)
                      +|.++++...+.+++.|+|++|     .+.+.+|.|+|+.                                        
T Consensus         3 aP~~l~v~~~~~~sv~v~W~~p-----~~~~~~y~v~y~~----------------------------------------   37 (92)
T d1tdqa2           3 APKNLRVGSRTATSLDLEWDNS-----EAEAQEYKVVYST----------------------------------------   37 (92)
T ss_dssp             CCEEEEEEEECSSCEEEEEECC-----SSCCSEEEEEEEE----------------------------------------
T ss_pred             cCcCCEEEEecCCEEEEEEEec-----CCcccceEEEEEE----------------------------------------
Confidence            6789999999999999999876     2335555555543                                        


Q ss_pred             eCCCCCCCCCccceeeeeCCC--CccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCc
Q psy3718         436 PSDTWYGHPGSFRNHCTWDPR--GRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKC  499 (543)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~  499 (543)
                       .+..  ......  ......  ..+.+.+|.|+ .|.|+|+|              .+..|.|+++
T Consensus        38 -~~~~--~~~~~~--~~~~~~~~~~~~i~~L~p~t~Y~~~V~a--------------~~~~g~s~p~   85 (92)
T d1tdqa2          38 -LAGE--QYHEVL--VPKGIGPTTKTTLTDLVPGTEYGVGISA--------------VMNSKQSIPA   85 (92)
T ss_dssp             -TTCC--CCEEEE--EECCSSSEEEEEECSCCTTCEEEEEEEE--------------EETTEECCCE
T ss_pred             -cCCC--cceeeE--EEecCCCeeEEEECCccCCCEEEEEEEE--------------EeCCCEecCE
Confidence             3221  010000  001222  33555699999 99999999              9999999764

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=8.8e-10  Score=83.08  Aligned_cols=89  Identities=16%  Similarity=0.250  Sum_probs=65.6

Q ss_pred             CCCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEE---EEeeeccCCceeEEEECCCCCCC
Q psy3718         247 APSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFE---TVDFSKEEGKEHHLTLSSLKTYT  323 (543)
Q Consensus       247 ~p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~L~p~t  323 (543)
                      +|+ +|.++.+..++++++.|.|.++     .+++.+|.|.|+...........   ........+...++.|.+|+|++
T Consensus         3 ~Pp-~~~~l~v~~~t~~sv~v~W~pp-----~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t   76 (101)
T d2cuia1           3 SRP-RLSQLSVTDVTTSSLRLNWEAP-----PGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGT   76 (101)
T ss_dssp             CCC-CCCCCEEESCCSSCEEEECCCC-----TTSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCTTC
T ss_pred             Ccc-CCCCcEEEEECCCEEEEEEEec-----cccccceEEEEEecCCCceeeccCCcceeEeecccceeEEEeCCCCcCC
Confidence            444 7789999999999999999987     45688999999876532211000   00000114567899999999999


Q ss_pred             EEEEEEEEEeCCCCCCCC
Q psy3718         324 QYSVVVQALNKLGPGPMS  341 (543)
Q Consensus       324 ~Y~~~V~a~n~~G~s~~s  341 (543)
                      .|.|+|+|+|..|.|+.+
T Consensus        77 ~Y~~~V~a~~~~g~g~~~   94 (101)
T d2cuia1          77 LYSLTLYGLRGPHKADSI   94 (101)
T ss_dssp             EEEEEEEEECSSSEEEEE
T ss_pred             EEEEEEEEEeCCcEeCCe
Confidence            999999999999988644

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=7.2e-10  Score=81.46  Aligned_cols=80  Identities=19%  Similarity=0.275  Sum_probs=53.6

Q ss_pred             CCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEe
Q psy3718         356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYG  435 (543)
Q Consensus       356 ~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~  435 (543)
                      +|.++++..++.+++.|.|++|     .+.+.+|.|.|.                                         
T Consensus         4 ~P~~l~v~~~s~~s~~l~W~~p-----~~~~~~y~v~~~-----------------------------------------   37 (90)
T d1tena_           4 APSQIEVKDVTDTTALITWFKP-----LAEIDGIELTYG-----------------------------------------   37 (90)
T ss_dssp             CCEEEEEESCCSSCEEEEEECC-----SSCCSEEEEEEE-----------------------------------------
T ss_pred             CCCCcEEEEecCCEEEEEEEeC-----ceEeccEEEEEE-----------------------------------------
Confidence            7889999989999999999876     233445555554                                         


Q ss_pred             eCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCc
Q psy3718         436 PSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKC  499 (543)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~  499 (543)
                      ..+.. .......   .......+.+.+|.|+ .|.|+|+|              .|..|.|++.
T Consensus        38 ~~~~~-~~~~~~~---~~~~~~~~~i~~L~p~t~Y~~~V~a--------------~~~~g~s~~~   84 (90)
T d1tena_          38 IKDVP-GDRTTID---LTEDENQYSIGNLKPDTEYEVSLIS--------------RRGDMSSNPA   84 (90)
T ss_dssp             ETTCT-TCCEEEE---EETTCCEEEECSCCTTCEEEEEEEE--------------EETTEECCCE
T ss_pred             EcCCC-ceeEEEE---ecCCcceeeEeeecCCCEEEEEEEE--------------EeCCCEeCCE
Confidence            33321 1111111   0134445666699999 99999999              9999998753

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.93  E-value=6.6e-10  Score=81.07  Aligned_cols=78  Identities=14%  Similarity=0.192  Sum_probs=52.6

Q ss_pred             CCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEe
Q psy3718         356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYG  435 (543)
Q Consensus       356 ~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~  435 (543)
                      +|.++++...+.+++.|.|++|.     +.+.+|.|.|+                                         
T Consensus         2 aP~~l~v~~~t~~sv~v~W~~p~-----~~~~~Y~v~~~-----------------------------------------   35 (87)
T d1qr4a1           2 NPKDLEVSDPTETTLSLRWRRPV-----AKFDRYRLTYV-----------------------------------------   35 (87)
T ss_dssp             CCEEEEEESCCSSEEEEEEECCS-----SCCSEEEEEEE-----------------------------------------
T ss_pred             cCcCcEEEEecCCEEEEEEECCC-----CCcceeEEEee-----------------------------------------
Confidence            67889998889999999999762     33555555554                                         


Q ss_pred             eCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCc
Q psy3718         436 PSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKC  499 (543)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~  499 (543)
                      ..+..   ...+.   .......+.+.+|.|+ .|.|+|+|              .+..|.|++.
T Consensus        36 ~~~~~---~~~~~---~~~~~~~~~~~~L~p~t~Y~v~V~a--------------~~~~~~s~~~   80 (87)
T d1qr4a1          36 SPSGK---KNEME---IPVDSTSFILRGLDAGTEYTISLVA--------------EKGRHKSKPT   80 (87)
T ss_dssp             CTTCC---EEEEE---ECTTCSEEEEESCCSSCEEEEEEEE--------------ESSSCBCCCE
T ss_pred             cCCcc---eeEEe---CCCCcCEEEECCCCcCCEEEEEEEE--------------EcCCCCccCE
Confidence            32221   11111   0033444666699999 99999999              9999988753

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.92  E-value=8.7e-10  Score=80.15  Aligned_cols=78  Identities=19%  Similarity=0.307  Sum_probs=53.5

Q ss_pred             CCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEe
Q psy3718         356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYG  435 (543)
Q Consensus       356 ~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~  435 (543)
                      +|.++++...+.+++.|+|.+|     .+.+.+|.|+|+                                         
T Consensus         3 ~P~nl~v~~~~~~s~~l~W~~p-----~~~~~~Y~v~~~-----------------------------------------   36 (86)
T d1tdqa3           3 SPRDLMVTASSETSISLIWTKA-----SGPIDHYRITFT-----------------------------------------   36 (86)
T ss_dssp             CCEEEEEEEECSSCEEEEEECC-----CSCCSEEEEEEE-----------------------------------------
T ss_pred             cCCCCEEEEecCCEEEEEEeCC-----CCCccceEEEEe-----------------------------------------
Confidence            7889999999999999999976     234555555554                                         


Q ss_pred             eCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCc
Q psy3718         436 PSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKC  499 (543)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~  499 (543)
                      ..++.   .....   .......+.+.+|.|+ .|.|+|.|              .+..|+|.++
T Consensus        37 ~~~~~---~~~~~---~~~~~~~~~~~~L~p~t~Y~v~V~a--------------~~~~~~s~p~   81 (86)
T d1tdqa3          37 PSSGI---SSEVT---VPRDRTSYTLTDLEPGAEYIISITA--------------ERGRQQSLES   81 (86)
T ss_dssp             CSSSC---CEEEE---EESSCSEEEECCCCTTCCEEEEEEE--------------EETTEECCCE
T ss_pred             ccccc---ceEEE---eCCCccEEEECCCccccEEEEEEEE--------------EcCCCEECCE
Confidence            32221   11110   0134445666799999 99999999              9999988764

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=9.6e-11  Score=88.49  Aligned_cols=92  Identities=12%  Similarity=0.118  Sum_probs=57.2

Q ss_pred             CCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEE
Q psy3718         352 TPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYK  431 (543)
Q Consensus       352 ~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~  431 (543)
                      .|+..|.++++..++++++.|+|++|.  ..+|.|.+|+|+|+                                     
T Consensus         3 ~~~d~P~~v~~~~~~~~sv~l~W~pP~--~~ng~i~~Y~v~y~-------------------------------------   43 (102)
T d2dtge1           3 KADDIVGPVTHEIFENNVVHLMWQEPK--EPNGLIVLYEVSYR-------------------------------------   43 (102)
T ss_dssp             CCCCCCCCCCCCSSSSSCCCCCCCCCC--SCSSCEEEECCCCB-------------------------------------
T ss_pred             CCCCCCCCCEEEEECCCEEEEEEEeCC--CCcceEEEeeeEEE-------------------------------------
Confidence            344467778887788889999998762  34555555555554                                     


Q ss_pred             EEEeeCCCCCC-CCCccceeeeeCCCCccccccccCceeeEEEEeCCCCCCCCCCccccccccccCCCccccc
Q psy3718         432 VVYGPSDTWYG-HPGSFRNHCTWDPRGRNMYEELKSQGRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDR  503 (543)
Q Consensus       432 i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~p~~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~  503 (543)
                          ..+.... ......   .......+.+.+|+|+.|.|+|+|              .|..|.|++|....
T Consensus        44 ----~~~~~~~~~~~~~~---~~~~~~~~~~~~L~~~tY~~rV~A--------------~n~~G~g~~S~~v~   95 (102)
T d2dtge1          44 ----RYGDEELHLCDTRK---HFALERGCRLRGLSPGNYSVRIRA--------------TSLAGNGSWTEPTY   95 (102)
T ss_dssp             ----SSSBCCCCCCCCSS---SCCCTTCCCCCSCCSSEECCCCCE--------------EETTBCCCCCCCCE
T ss_pred             ----ecCCCCceeeeeee---cccceEEEEEeccceeeEEEEEEE--------------EcCCccCCCCCCEE
Confidence                3322100 000000   002233345559988899999999              99999999876544

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.3e-09  Score=78.87  Aligned_cols=31  Identities=19%  Similarity=0.165  Sum_probs=26.1

Q ss_pred             CCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCc
Q psy3718         455 PRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKC  499 (543)
Q Consensus       455 ~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~  499 (543)
                      +...+.+.||.|+ .|.|+|.|              .+..|.|.++
T Consensus        48 ~~t~~~l~~L~p~t~Y~~~V~a--------------~~~~g~s~~~   79 (91)
T d1fnaa_          48 SKSTATISGLKPGVDYTITVYA--------------VTGRGDSPAS   79 (91)
T ss_dssp             TCCEEEECSCCTTCEEEEEEEE--------------ECTTCCSSCS
T ss_pred             CccEEEeCCCCCCCEEEEEEEE--------------EeCCccCCCc
Confidence            4445666799999 99999999              9999998764

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=1e-08  Score=77.88  Aligned_cols=97  Identities=18%  Similarity=0.258  Sum_probs=68.4

Q ss_pred             CCCCCCCeeeEE-EecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCce--EEEEeeeccCCceeEEEECCCCCC
Q psy3718         246 EAPSGPPTHIKV-EATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFL--FETVDFSKEEGKEHHLTLSSLKTY  322 (543)
Q Consensus       246 ~~p~~~P~~~~~-~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~L~p~  322 (543)
                      +.||++|+++.+ .....+++.++|.++.+.  + ....|.+.|+.........  ...............+.+.+|.++
T Consensus         2 G~PP~~P~~v~~i~~~~~~sv~~sW~p~~d~--~-~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~   78 (107)
T d1cd9b1           2 GYPPASPSNLSCLMHLTTNSLVCQWEPGPET--H-LPTSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLY   78 (107)
T ss_dssp             CCCCCCCEEEEEEEETTTTEEEEEEECCSCC--S-SCCEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTT
T ss_pred             CCccCCCcCCEEEEecCCCEEEEEEcCCCCC--C-CCcceeEEEEEeecccceeeeeeeeeccccCccccEEEcCCCCcC
Confidence            457889999985 567889999999988664  3 3467888876654322111  111112222456788999999999


Q ss_pred             CEEEEEEEEEeCCCCCCCCcceee
Q psy3718         323 TQYSVVVQALNKLGPGPMSEEVKQ  346 (543)
Q Consensus       323 t~Y~~~V~a~n~~G~s~~s~~~~~  346 (543)
                      +.|.|+|.|.|..|.+. |..+.+
T Consensus        79 t~Y~frV~A~N~~G~s~-S~~~~~  101 (107)
T d1cd9b1          79 QYMAIWVQAENMLGSSE-SPKLCL  101 (107)
T ss_dssp             SCEEEEEEEEETTEEEE-CCCEEE
T ss_pred             ceEEEEEEEEeCCcccc-CCCEEc
Confidence            99999999999999874 555554

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.6e-09  Score=80.33  Aligned_cols=79  Identities=19%  Similarity=0.241  Sum_probs=53.1

Q ss_pred             CCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEe
Q psy3718         356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYG  435 (543)
Q Consensus       356 ~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~  435 (543)
                      +|.++++..++.+++.|+|++|.     +.+.+|.+.|+..                                       
T Consensus         4 ~P~~l~v~~vt~~sv~l~W~~p~-----~~~~~y~i~~~~~---------------------------------------   39 (94)
T d1j8ka_           4 RPKGLAFTDVDVDSIKIAWESPQ-----GQVSRYRVTYSSP---------------------------------------   39 (94)
T ss_dssp             CCCCCEEEEEETTEEEEECCCCS-----SCCSCEEEEEEET---------------------------------------
T ss_pred             CCCCCEEEEecCCEEEEEEeCCC-----ccccceEEEEEee---------------------------------------
Confidence            77899999999999999999762     3355566655433                                       


Q ss_pred             eCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCC
Q psy3718         436 PSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDK  498 (543)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~  498 (543)
                        ... .......   .......+.+.+|.|+ .|.|+|.|              .|..|.|++
T Consensus        40 --~~~-~~~~~~~---~~~~~~~~~i~~L~p~t~Y~~~V~a--------------~~~~g~S~p   83 (94)
T d1j8ka_          40 --EDG-IHELFPA---PDGEEDTAELQGLRPGSEYTVSVVA--------------LHDDMESQP   83 (94)
T ss_dssp             --TTE-EEEECCC---CCSSCCEEEECSCCCCSEEEEEEEE--------------CSSSCCCCC
T ss_pred             --cCC-CceEEEe---cCCCccEEEECCCCCCCEEEEEEEE--------------EeCCCCcCC
Confidence              221 0000000   0023344566699999 99999999              999998875

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=2e-09  Score=79.51  Aligned_cols=81  Identities=19%  Similarity=0.256  Sum_probs=54.3

Q ss_pred             CCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEE
Q psy3718         355 QPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVY  434 (543)
Q Consensus       355 ~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~  434 (543)
                      .+|.++.+...+.+++.|+|.+|     .+.+.+|.|.|                                         
T Consensus         5 ~~P~~l~v~~v~~~si~v~W~~p-----~~~~~~y~i~~-----------------------------------------   38 (93)
T d1tdqa1           5 DGPTQILVRDVSDTVAFVEWTPP-----RAKVDFILLKY-----------------------------------------   38 (93)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECC-----SSCCSEEEEEE-----------------------------------------
T ss_pred             CcCCCCEEEEeCCCEEEEEEEcc-----ccCCCceEEEE-----------------------------------------
Confidence            37889999999999999999876     23344555554                                         


Q ss_pred             eeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCc
Q psy3718         435 GPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKC  499 (543)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~  499 (543)
                      +..+.. .......   .......+.+.+|+|+ .|.|+|+|              .+..|.|++.
T Consensus        39 ~~~~~~-~~~~~~~---~~~~~~~~~i~~L~p~t~Y~v~V~a--------------~~~~g~s~~~   86 (93)
T d1tdqa1          39 GLVGGE-GGKTTFR---LQPPLSQYSVQALRPGSRYEVSISA--------------VRGTNESDAS   86 (93)
T ss_dssp             EESSSS-CCCEEEE---ECTTCSEEEECSCCTTCEEEEEEEE--------------EETTEECCCE
T ss_pred             EeccCc-ceeeEEE---eCCCceEEEEeCcccceEEEEEEEE--------------EeCCCCcCCE
Confidence            443332 1111111   0133345666699999 99999999              9999998753

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=9.6e-10  Score=81.36  Aligned_cols=77  Identities=13%  Similarity=0.118  Sum_probs=51.7

Q ss_pred             CCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEe
Q psy3718         356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYG  435 (543)
Q Consensus       356 ~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~  435 (543)
                      +|.++++...+.+++.|+|++|.     +.+.+|.|.|                                         .
T Consensus         4 ~P~~l~~~~~~~~sv~l~W~~p~-----~~~~~Y~v~~-----------------------------------------~   37 (93)
T d2cuma1           4 APRDLEAKEVTPRTALLTWTEPP-----VRPAGYLLSF-----------------------------------------H   37 (93)
T ss_dssp             CCEEEEEESCCSSCEEEEEECCS-----SCCSEEEEEE-----------------------------------------E
T ss_pred             cCCCCEEEEeCCCEEEEEEEccc-----cccccEEEEE-----------------------------------------E
Confidence            77889998888899999998762     3345555555                                         3


Q ss_pred             eCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCC
Q psy3718         436 PSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDK  498 (543)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~  498 (543)
                      ..+..   .....   .......+.+.||.|+ .|.|+|+|              .+..|.|++
T Consensus        38 ~~~~~---~~~~~---~~~~~~~~~i~~L~p~t~Y~~~V~a--------------~~~~g~s~~   81 (93)
T d2cuma1          38 TPGGQ---TQEIL---LPGGITSHQLLGLFPSTSYNARLQA--------------MWGQSLLPP   81 (93)
T ss_dssp             CTTSC---EEEEE---ECSSCSEEEECSCCTTCEEEEEEEE--------------EBTTBCCCC
T ss_pred             ccccc---cEEEE---ECCCccEEEEeCccCCCEEEEEEEE--------------EeCCCCCCC
Confidence            33221   11111   0023344566699999 99999999              999998875

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.5e-09  Score=80.95  Aligned_cols=85  Identities=13%  Similarity=0.172  Sum_probs=54.7

Q ss_pred             CCCCcEEEEec--cCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEE
Q psy3718         356 PPQDNTCTTLT--SQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVV  433 (543)
Q Consensus       356 ~P~~~~~~~~~--~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~  433 (543)
                      ||.++.+..+.  ++.+.|+|++|...+.                                         ++.+..|.|+
T Consensus         4 pP~~l~v~~~~~~~~~l~v~W~~P~~~~~-----------------------------------------~~~~~~y~v~   42 (104)
T d1n26a3           4 PPANITVTAVARNPRWLSVTWQDPHSWNS-----------------------------------------SFYRLRFELR   42 (104)
T ss_dssp             CCEEEEEEECTTCTTCEEEEEECCTTCCC-----------------------------------------SSSCEEEEEE
T ss_pred             CCCCCEEEEEecCCCEEEEEEEeeeecCC-----------------------------------------CceeEEEEEE
Confidence            78888887764  4568888887743223                                         3444555555


Q ss_pred             EeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcc
Q psy3718         434 YGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCK  500 (543)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~  500 (543)
                      |+..+..  ......   .......+.+.+|.|+ .|.|+|+|              .|..|.|..|.
T Consensus        43 ~~~~~~~--~~~~~~---~~~~~~~~~i~~L~p~t~Y~~rVra--------------~n~~g~g~wSe   91 (104)
T d1n26a3          43 YRAERSK--TFTTWM---VKDLQHHCVIHDAWSGLRHVVQLRA--------------QEEFGQGEWSE   91 (104)
T ss_dssp             EEETTCS--CCEEEE---CGGGCSEEEESSCCTTCCEEEEEEE--------------EETTTBSCCCC
T ss_pred             EeeCCCC--ceeeec---cccceEEEEECCCCCCCEEEEEEEE--------------EeCCCccCCcC
Confidence            5554432  121111   0023344556699999 99999999              99999998764

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4.5e-09  Score=82.83  Aligned_cols=90  Identities=17%  Similarity=0.187  Sum_probs=59.3

Q ss_pred             CCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEE
Q psy3718         351 GTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGY  430 (543)
Q Consensus       351 ~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y  430 (543)
                      +.|. +|.++++...+++++.|.|++|.  +.++.+..|.++|+..                                  
T Consensus        15 d~P~-~P~~~~v~~~~~~sv~l~W~~p~--~~~~~i~~~~~~~~~~----------------------------------   57 (127)
T d1ueya_          15 DVPN-PPFDLELTDQLDKSVQLSWTPGD--DNNSPITKFIIEYEDA----------------------------------   57 (127)
T ss_dssp             CSCC-CCEEEEEECCSSSCEEEEEECCC--CCSSCEEEEEEEEEBT----------------------------------
T ss_pred             ccCc-CCCCcEEEEecCCeEEEEEeCCc--ccccceEeeeeeeccc----------------------------------
Confidence            4565 78999999999999999999762  3445555666555432                                  


Q ss_pred             EEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccc
Q psy3718         431 KVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKN  501 (543)
Q Consensus       431 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~  501 (543)
                             +...+....   .........+.+.+|+|+ .|.|+|+|              +|..|.|+++..
T Consensus        58 -------~~~~~~~~~---~~~~~~~~~~~i~~L~p~t~Y~frV~A--------------~n~~G~s~~S~~  105 (127)
T d1ueya_          58 -------MHKPGLWHH---QTEVSGTQTTAQLNLSPYVNYSFRVMA--------------VNSIGKSLPSEA  105 (127)
T ss_dssp             -------TTCTTCEEE---EEEEESSCCEEEECCCTTCEECCEEEE--------------EESSCBCCCCSC
T ss_pred             -------cccceeEEE---EeecCCceEEEECCCccCCEEEEEEEE--------------EcCCcCcCCcCC
Confidence                   221000000   011123334556699999 99999999              999999988653

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=3.8e-10  Score=83.56  Aligned_cols=79  Identities=9%  Similarity=0.115  Sum_probs=55.7

Q ss_pred             ceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeee----cCCCceeeEEEEeeecCCCccEEEEEec
Q psy3718          59 RNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEI----LPNGVLSDLSIKRTERGDSALFTCEIKS  134 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  134 (543)
                      +.+.+..|++++|.|.+. .|.+.|.|++++..+..............    .-+...++|+|.+++++|+|.|.|.|.|
T Consensus         3 ~~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n   81 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (93)
T ss_dssp             EEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             cEEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEEC
Confidence            457889999999999864 57889999999877632222222211100    0012235799999999999999999999


Q ss_pred             ccce
Q psy3718         135 QKIS  138 (543)
Q Consensus       135 ~~~s  138 (543)
                      ..++
T Consensus        82 ~~~t   85 (93)
T d1ccza1          82 ITDT   85 (93)
T ss_dssp             CCSC
T ss_pred             CCcE
Confidence            7555

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.7e-09  Score=78.33  Aligned_cols=80  Identities=19%  Similarity=0.231  Sum_probs=54.0

Q ss_pred             CCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEe
Q psy3718         356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYG  435 (543)
Q Consensus       356 ~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~  435 (543)
                      ||.++++..++.+++.|+|.+|     .+.+.                                         +|.|.|.
T Consensus         2 pP~~l~~~~v~~~si~l~W~~p-----~~~~~-----------------------------------------~~~i~~~   35 (90)
T d1fnha1           2 APTDLKFTQVTPTSLSAQWTPP-----NVQLT-----------------------------------------GYRVRVT   35 (90)
T ss_dssp             CCEEEEEEEECSSCEEEEEECC-----SSCCS-----------------------------------------EEEEEEE
T ss_pred             CCCCEEEEEecCCEEEEEEEcc-----ceecc-----------------------------------------ceEEEEE
Confidence            6789999999999999999976     22334                                         4444444


Q ss_pred             eCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCc
Q psy3718         436 PSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKC  499 (543)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~  499 (543)
                      ..+.. .......   .......+.+.+|.|+ .|.|+|+|              .|..|.|.++
T Consensus        36 ~~~~~-~~~~~~~---~~~~~~~~~i~~L~p~t~Y~~~V~a--------------~n~~g~s~~~   82 (90)
T d1fnha1          36 PKEKT-GPMKEIN---LAPDSSSVVVSGLMVATKYEVSVYA--------------LKDTLTSRPA   82 (90)
T ss_dssp             ESSSC-SCCCEEE---ECTTCCEEEECSCCTTCEEEEEEEE--------------EETTEECCCE
T ss_pred             eeeCC-CceEEEE---eCCCCeEEEEecccCceEEEEEEEE--------------EeCCCCcCCE
Confidence            43322 1111111   1134445666699999 99999999              9999999864

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.7e-09  Score=78.20  Aligned_cols=67  Identities=15%  Similarity=0.154  Sum_probs=51.7

Q ss_pred             ceEEEEeeCCCCCCCCcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCc--cccccccCc-eeeEEEEeCCCCCCCCCC
Q psy3718         409 TDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGR--NMYEELKSQ-GRGYLVPRGGPPPCPGSD  485 (543)
Q Consensus       409 ~~~~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~p~-~Y~~~v~A~~~~~~~~~~  485 (543)
                      +++.|+|++|  .  .+.|++|+|+|+..+.. ....++.     ++++.  +.+.||+|+ .|.|+|.|          
T Consensus        16 ~s~~vsW~~P--~--~~~i~~Y~i~y~~~~~~-~~~~~~~-----v~~~~~~~~l~gL~P~t~Y~v~v~a----------   75 (93)
T d1owwa_          16 NSHPIQWNAP--Q--PSHISKYILRWRPKNSV-GRWKEAT-----IPGHLNSYTIKGLKPGVVYEGQLIS----------   75 (93)
T ss_dssp             TCEEEEEECC--S--SSCEEEEEEEEEETTCS-SCCEEEE-----ECSSCCEEEECSCCSSEEEEEEEEE----------
T ss_pred             CEEEEEeecc--c--ccceeEEEEEEeecccc-ceeeeec-----cCCCccEEEECCcccCcEEEEEEEE----------
Confidence            6799999998  4  35899999999987654 2333333     45554  455599999 99999999          


Q ss_pred             ccccccccccCCCc
Q psy3718         486 ETLYSRHRGESDKC  499 (543)
Q Consensus       486 ~~~~~~~~G~g~~~  499 (543)
                          +|..|.|+++
T Consensus        76 ----v~~~G~s~~~   85 (93)
T d1owwa_          76 ----IQQYGHQEVT   85 (93)
T ss_dssp             ----EESSSCEEEE
T ss_pred             ----EeCCCccCcE
Confidence                9999998753

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.8e-08  Score=76.81  Aligned_cols=94  Identities=15%  Similarity=0.197  Sum_probs=67.2

Q ss_pred             CCCCCeeeEEEec--CCCeEEEEeeCCCCC-CCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCE
Q psy3718         248 PSGPPTHIKVEAT--DQNTLKVSWSPPERD-HWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQ  324 (543)
Q Consensus       248 p~~~P~~~~~~~~--~~~~i~l~W~~~~~~-~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~  324 (543)
                      -+.+|.++.+..+  +++++.|+|.+|... ........|.+.|+..+......   +.    ......+.|.+|.+++.
T Consensus         7 kP~PP~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~~~~~~---~~----~~~~~~~~i~~L~~~t~   79 (109)
T d1uc6a_           7 KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQH---VE----LSNGTAHTITDAYAGKE   79 (109)
T ss_dssp             CCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCCCC---EE----ESSCSEEEETTCCSSSC
T ss_pred             ECCCCCCCEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCCCceEE---ec----cCCceeEEeCCCCCCCE
Confidence            3568999998765  567899999998653 22445678999998877654322   11    23567899999999999


Q ss_pred             EEEEEEEEeCCC--CCCCCcceeeec
Q psy3718         325 YSVVVQALNKLG--PGPMSEEVKQYT  348 (543)
Q Consensus       325 Y~~~V~a~n~~G--~s~~s~~~~~~t  348 (543)
                      |.|+|+|.|..+  .|.+|..+.++|
T Consensus        80 Y~~rVrA~~~~~g~wS~WS~~~~~tt  105 (109)
T d1uc6a_          80 YIIQVAAKDNEIGTWSDWSVAAHATP  105 (109)
T ss_dssp             EEEEEECCBSSSCCCCCCCEEEEECC
T ss_pred             EEEEEEEEECCCCCcCCCCCCEEeEC
Confidence            999999987643  345565555543

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.7e-09  Score=81.61  Aligned_cols=77  Identities=14%  Similarity=0.101  Sum_probs=51.2

Q ss_pred             CCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEe
Q psy3718         356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYG  435 (543)
Q Consensus       356 ~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~  435 (543)
                      +|.++++..++.+++.|+|++|     .+.+.+|.|+|                                         .
T Consensus         3 ~P~~l~~~~~t~~si~l~W~~p-----~~~i~~Y~v~~-----------------------------------------~   36 (102)
T d2cuha1           3 GPTQLRALNLTEGFAVLHWKPP-----QNPVDTYDIQV-----------------------------------------T   36 (102)
T ss_dssp             SCEEEECCCCSSSCEEEEEECC-----SSCCSEEEEEE-----------------------------------------E
T ss_pred             CCCccEEEEeCCCEEEEEEEee-----eccceeeEEEE-----------------------------------------E
Confidence            6788888888888899999875     13345555555                                         3


Q ss_pred             eCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCC
Q psy3718         436 PSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDK  498 (543)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~  498 (543)
                      ..+..   .....   .......+.+.||.|+ .|.|+|+|              .+..|.|++
T Consensus        37 ~~~~~---~~~~~---~~~~~~~~~l~~L~p~t~Y~~~V~a--------------~~~~~~s~~   80 (102)
T d2cuha1          37 APGAP---PLQAE---TPGSAVDYPLHDLVLHTNYTATVRG--------------LRGPNLTSP   80 (102)
T ss_dssp             CSSSC---CEEEE---EETTCSEEEECSCCSSSEEEEEEEE--------------EETTEECCC
T ss_pred             ecccc---ceeee---eeeeeeeEEEccEEeeEEEEEEEEE--------------EeCCCCcCC
Confidence            32221   11111   0133445666799999 99999999              998888865

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=1.2e-09  Score=85.16  Aligned_cols=35  Identities=17%  Similarity=0.153  Sum_probs=28.5

Q ss_pred             CCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcccccc
Q psy3718         456 RGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDRV  504 (543)
Q Consensus       456 ~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~v  504 (543)
                      ...+.+.+|+|+ .|.|+|+|              .|.+|.|++++...+
T Consensus        74 ~~~~~v~~L~p~t~Y~frV~A--------------~n~~G~s~~S~~~~~  109 (120)
T d1wfua_          74 ATRHVVEGLEPRTLYKFRLKV--------------TSPSGEYEYSPVVSV  109 (120)
T ss_dssp             CSEEEEESCCTTCEEEEEEEE--------------ECSSSCEEECCCEEE
T ss_pred             ccEEeCCCCCCCcEeeEEEEE--------------EeCCcEeCCCCCEEE
Confidence            344666799999 99999999              999999988764443

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=9.4e-09  Score=77.19  Aligned_cols=39  Identities=18%  Similarity=0.501  Sum_probs=29.6

Q ss_pred             CCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeC
Q psy3718         352 TPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPS  396 (543)
Q Consensus       352 ~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~  396 (543)
                      +|+ +|.++++..++.+++.|+|++|     .+.+.+|.|+|...
T Consensus         3 ~Pp-~~~~l~v~~~t~~sv~v~W~pp-----~~~~~~y~i~~~~~   41 (101)
T d2cuia1           3 SRP-RLSQLSVTDVTTSSLRLNWEAP-----PGAFDSFLLRFGVP   41 (101)
T ss_dssp             CCC-CCCCCEEESCCSSCEEEECCCC-----TTSCSEEEEEEECC
T ss_pred             Ccc-CCCCcEEEEECCCEEEEEEEec-----cccccceEEEEEec
Confidence            444 6789999999999999999876     24466777777544

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=6.9e-09  Score=76.85  Aligned_cols=41  Identities=12%  Similarity=0.322  Sum_probs=29.3

Q ss_pred             CCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEe
Q psy3718         352 TPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGP  395 (543)
Q Consensus       352 ~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~  395 (543)
                      .|+.+|.++++...+..++.|+|.++.   .++...+|.|.++.
T Consensus         2 ~PP~~P~n~~~~~~~~~si~~~W~p~~---~~~~~~~y~v~~~~   42 (95)
T d1bqua1           2 LPPEKPKNLSCIVNEGKKMRCEWDGGR---ETHLETNFTLKSEW   42 (95)
T ss_dssp             CCCCCCEEEEEEEETTSCCEEEEECCS---CCSSCCEEEEEEEE
T ss_pred             cCcCCCeeeEEEEccCCEEEEEEeCcc---cCCCceEEEEEEEE
Confidence            355699999999999999999999762   23333455555543

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=8.5e-09  Score=77.45  Aligned_cols=87  Identities=15%  Similarity=-0.009  Sum_probs=46.9

Q ss_pred             CCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEEe
Q psy3718         356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVYG  435 (543)
Q Consensus       356 ~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~~  435 (543)
                      +|.++.+...+++++.|.|.+|...  ++                                      .......|.|+|+
T Consensus         4 ~P~~l~v~~~~~~s~~v~W~~P~~~--~~--------------------------------------~~~~~~~y~v~y~   43 (101)
T d1iarb2           4 APGNLTVHTNVSDTLLLTWSNPYPP--DN--------------------------------------YLYNHLTYAVNIW   43 (101)
T ss_dssp             CCEEEEEC----CCEEEEEECSSCT--TS--------------------------------------TTGGGCEEEEEEE
T ss_pred             cCCcCEEEEEeCCeEEEEEccccCC--CC--------------------------------------ccceeeEEEEeee
Confidence            7889999888889999999977321  10                                      1112234556555


Q ss_pred             eCCCCCCCCCccceeeeeCCCCc--cccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcc
Q psy3718         436 PSDTWYGHPGSFRNHCTWDPRGR--NMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCK  500 (543)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~  500 (543)
                      ..++. ......   ........  +.+.+|.|+ .|.|+|+|              .|..|.|.+|.
T Consensus        44 ~~~~~-~~~~~~---~~~~~~~~~~~~i~~L~p~t~Y~~rVrA--------------~~~~g~g~wSe   93 (101)
T d1iarb2          44 SENDP-ADFRIY---NVTYLEPSLRIAASTLKSGISYRARVRA--------------WAQAYNTTWSE   93 (101)
T ss_dssp             ESSSC-SCEEEE---EECSSCCEEEECC-----CCCEEEEEEE--------------ECGGGTCCCCC
T ss_pred             cccce-eeeeee---eeccCccceEEEECCCCCCCEEEEEEEE--------------EcCCCCCCCcC
Confidence            54432 011100   01123333  444599999 99999999              99999988765

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.3e-08  Score=76.25  Aligned_cols=89  Identities=17%  Similarity=0.249  Sum_probs=56.4

Q ss_pred             CCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEE
Q psy3718         248 PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSV  327 (543)
Q Consensus       248 p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~  327 (543)
                      ++.|| +|.+.. +.+++.|.|.+|.... ......|.|+|+..+..........     ......+.+.+|.|++.|.|
T Consensus         5 k~~Pp-~l~v~~-~~~s~~l~W~~P~~~~-~~~~~~Y~v~y~~~~~~~~~~~~~~-----~~~~~~~~l~~L~p~t~Y~~   76 (100)
T d2gysa4           5 QMAPP-SLQVTK-DGDSYSLRWETMKMRY-EHIDHTFEIQYRKDTATWKDSKTET-----LQNAHSMALPALEPSTRYWA   76 (100)
T ss_dssp             CCCCC-EEEEC----CCCEEEEEC---------CEEEEEEEECSSSCSTTSCEEE-----EESCSEEECCCCCSSCCCEE
T ss_pred             cCCCC-ccEEEE-CCCEEEEEEecCcccC-CccceEEEEEEeecccceeceeecc-----cCCceEEEeCCCCCCCeEEE
Confidence            34456 687765 4568999999987653 3355789999987665432221111     12457899999999999999


Q ss_pred             EEEEEeCCCC--CCCCcce
Q psy3718         328 VVQALNKLGP--GPMSEEV  344 (543)
Q Consensus       328 ~V~a~n~~G~--s~~s~~~  344 (543)
                      +|+|.+..|.  |.+|++.
T Consensus        77 rVRa~~~~g~~~g~WSeWS   95 (100)
T d2gysa4          77 RVRVRTSRTGYNGIWSEWS   95 (100)
T ss_dssp             EEEEEECCTTCCBCCCCCC
T ss_pred             EEEEEECCCCCCCCccCCC
Confidence            9999987763  5566554

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.4e-08  Score=78.65  Aligned_cols=76  Identities=13%  Similarity=0.130  Sum_probs=53.8

Q ss_pred             cceEEEEeeCCCCCCCCcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCc--cccccccCc-eeeEEEEeCCCCCCCCC
Q psy3718         408 CTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGR--NMYEELKSQ-GRGYLVPRGGPPPCPGS  484 (543)
Q Consensus       408 ~~~~~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~p~-~Y~~~v~A~~~~~~~~~  484 (543)
                      .+++.|+|.+|  . .++.|.+|+|.|+..+..........  ......+.  +.+.||+|+ .|.|+|+|         
T Consensus        29 ~tsi~v~W~~p--~-~~~~i~gY~v~y~~~~~~~~~~~~~~--~~v~~~~~~s~~i~~L~p~t~Y~f~V~A---------   94 (120)
T d1ujta_          29 PTTVQVTWTVD--R-QPQFIQGYRVMYRQTSGLQATSSWQN--LDAKVPTERSAVLVNLKKGVTYEIKVRP---------   94 (120)
T ss_dssp             TTEEEEEEEES--S-CCSSCCEEEEEEEESSSSSTTTCCEE--EECCCTTCCEEEEESCCSSEEEEEEEEE---------
T ss_pred             CCeEEEEecCC--C-CCCcEEEEEEEeeecccCCCCcceEE--EEeccCceeEEEECCCCCCCEEEEEEEE---------
Confidence            47899999987  4 46789999999988765412221111  11223333  445599999 99999999         


Q ss_pred             CccccccccccCCCcccc
Q psy3718         485 DETLYSRHRGESDKCKND  502 (543)
Q Consensus       485 ~~~~~~~~~G~g~~~~~~  502 (543)
                           .|..|.|.+|...
T Consensus        95 -----~n~~G~G~~S~~~  107 (120)
T d1ujta_          95 -----YFNEFQGMDSESK  107 (120)
T ss_dssp             -----ESSSCCCCCCCCE
T ss_pred             -----EeCCcCcCCCCCE
Confidence                 9999999887543

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.72  E-value=1.9e-08  Score=75.72  Aligned_cols=58  Identities=9%  Similarity=-0.068  Sum_probs=38.8

Q ss_pred             ceeEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCcccccccccc-CCCccccc
Q psy3718         426 VIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGE-SDKCKNDR  503 (543)
Q Consensus       426 ~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~-g~~~~~~~  503 (543)
                      .+..|+|+|+..+..  .....    .......+.+.+|.|+ .|.|+|+|              .+..|. |+.|....
T Consensus        40 ~~l~Y~v~~~~~~~~--~~~~~----~~~~~~~~~i~~L~p~t~Y~~rVra--------------~~~~G~wS~wS~~~~   99 (103)
T d1f6fb2          40 FTMEYEIRLKPEEAE--EWEIH----FTGHQTQFKVFDLYPGQKYLVQTRC--------------KPDHGYWSRWSQESS   99 (103)
T ss_dssp             SCEEEEEEEEESSCS--CCEEE----EEETCSEEEECCCCTTCEEEEEEEE--------------EESSSCCCCCCCCEE
T ss_pred             EEEEEEEEEEeCCCc--ceeee----cccceeEEEeCCCCcceEEEEEEEE--------------EeCCCCCCCCcCcee
Confidence            556666666665543  11111    1134555666799999 99999999              999996 77776544

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.3e-08  Score=76.98  Aligned_cols=72  Identities=8%  Similarity=-0.107  Sum_probs=53.9

Q ss_pred             cceEEEEeeCCCCCCCCcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCc--cccccccCc-eeeEEEEeCCCCCCCCC
Q psy3718         408 CTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGR--NMYEELKSQ-GRGYLVPRGGPPPCPGS  484 (543)
Q Consensus       408 ~~~~~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~p~-~Y~~~v~A~~~~~~~~~  484 (543)
                      .+++.|+|.+|  ...++.+.+|.|+|+..... ......    .......  +.+.+|.|+ .|.|+|+|         
T Consensus        20 ~~~v~l~W~pp--~~~~~~~~~y~i~y~~~~~~-~~~~~~----~~~~~~~~~~~i~~L~p~t~Y~frVra---------   83 (105)
T d2d9qb2          20 AGCLQLSWEPW--QPGLHINQKCELRHKPQRGE-ASWALV----GPLPLEALQYELCGLLPATAYTLQIRC---------   83 (105)
T ss_dssp             CSCEEEEEECC--GGGTTSCEEEEEEEEESSSC-CCCEEE----EEECSCEEEEEECSCCSCCCEEEEEEE---------
T ss_pred             CCeEEEEEcCC--CCCCceeEEEEEEEEecCCc-cceeee----ecccCCcceeEEecccCCeEEEEEEEE---------
Confidence            36799999999  78888999999999987653 222221    1133333  455599999 99999999         


Q ss_pred             CccccccccccCCCcc
Q psy3718         485 DETLYSRHRGESDKCK  500 (543)
Q Consensus       485 ~~~~~~~~~G~g~~~~  500 (543)
                           .|..|.|.+|.
T Consensus        84 -----~n~~g~G~~S~   94 (105)
T d2d9qb2          84 -----IRWPLPGHWSD   94 (105)
T ss_dssp             -----EECSSCCCCCC
T ss_pred             -----EeCCCCCCCcC
Confidence                 99999987653

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=3.1e-08  Score=74.76  Aligned_cols=36  Identities=11%  Similarity=-0.129  Sum_probs=27.2

Q ss_pred             CCCCccccccccCc-eeeEEEEeCCCCCCCCCCcccccccccc-CCCccccc
Q psy3718         454 DPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGE-SDKCKNDR  503 (543)
Q Consensus       454 ~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~-g~~~~~~~  503 (543)
                      .....+.+.+|+|+ .|.|+|+|              .|..|. |+.|....
T Consensus        62 ~~~~~~~i~~L~p~t~Y~~rVrA--------------~n~~G~ws~wS~~~~   99 (104)
T d3d48r2          62 GQQTEFKILSLHPGQKYLVQVRC--------------KPDHGYWSAWSPATF   99 (104)
T ss_dssp             ETCSEEEECC--CCCEEEEEEEE--------------EESSSCCCCCCCCEE
T ss_pred             ccccEEEECCCCCCCEEEEEEEE--------------EeCCCCCCCCcCCEE
Confidence            44555666799999 99999999              999997 88776544

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.9e-08  Score=77.53  Aligned_cols=31  Identities=13%  Similarity=0.114  Sum_probs=25.8

Q ss_pred             CCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcc
Q psy3718         456 RGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCK  500 (543)
Q Consensus       456 ~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~  500 (543)
                      ...+.+.+|.++ .|.|+|+|              .|..|.|..|.
T Consensus        64 ~~~~~i~~L~~~t~Y~~~V~a--------------~~~~G~g~~S~   95 (115)
T d1bqua2          64 RSSFTVQDLKPFTEYVFRIRC--------------MKEDGKGYWSD   95 (115)
T ss_dssp             CSEEEECSCCSSEEEEEEEEE--------------EETTSCSCCCC
T ss_pred             ccEEeeCCCccCcEEEEEEEE--------------EeCCCccCCcC
Confidence            344556699999 99999999              99999987754

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=2.5e-08  Score=75.41  Aligned_cols=74  Identities=8%  Similarity=-0.135  Sum_probs=55.1

Q ss_pred             cceEEEEeeCCCCCCCCcceeEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCc
Q psy3718         408 CTDIRASWVSPPLITANGVIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDE  486 (543)
Q Consensus       408 ~~~~~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~  486 (543)
                      .+.+.|+|.+|  ...++.+.+|.|+|+...+. .....+.  ....+...+.+.+|.|+ .|.|+|+|           
T Consensus        21 ~~~i~v~W~pp--~~~~~~~~~Y~i~y~~~~~~-~~w~~v~--~~~~~~~~~~l~~L~p~t~Y~frVra-----------   84 (106)
T d1cd9b2          21 PGCLWLSWKPW--KPSEYMEQECELRYQPQLKG-ANWTLVF--HLPSSKDQFELCGLHQAPVYTLQMRC-----------   84 (106)
T ss_dssp             CSCEEEEEECC--GGGTTSCEEEEEEEEESSTT-CCCEEEE--EEESCEEEEEECCCCSCSCEEEEEEE-----------
T ss_pred             CCEEEEEEcCc--ccCCccceEEEEEEeecccc-ccceeee--cccCCceEEEEeccCCCeEEEEEEEE-----------
Confidence            36789999999  88888999999999976543 2222221  11234444556699999 99999999           


Q ss_pred             cccccccccCCCcc
Q psy3718         487 TLYSRHRGESDKCK  500 (543)
Q Consensus       487 ~~~~~~~G~g~~~~  500 (543)
                         ++..|.|..|.
T Consensus        85 ---~~~~g~g~wS~   95 (106)
T d1cd9b2          85 ---IRSSLPGFWSP   95 (106)
T ss_dssp             ---EESSSCCCCCC
T ss_pred             ---EeCCCCCCCcC
Confidence               99999987654

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=5.6e-08  Score=72.29  Aligned_cols=89  Identities=12%  Similarity=0.084  Sum_probs=60.2

Q ss_pred             CCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEE
Q psy3718         251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQ  330 (543)
Q Consensus       251 ~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~  330 (543)
                      +|.++++...+... .|+|++|...  ++..  |.+++...+..........  .........+.+.+|.++..|.|||+
T Consensus         3 ~P~nv~v~s~n~~~-~L~W~pP~~~--g~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~Y~fRV~   75 (98)
T d1fyhb1           3 TPTNVTIESYNMNP-IVYWEYQIMP--QVPV--FTVEVKNYGVKNSEWIDAC--INISHHYCNISDHVGDPSNSLWVRVK   75 (98)
T ss_dssp             CCEEEEEECBSSCC-EEEEECCCCS--SCCE--EEEEEEETTCSSSCCEEEE--EEESSSEEECGGGCCSTTSCEEEEEE
T ss_pred             cCCceEEEEeCCcE-EEEECCCCCC--CCCc--eeEEEEEeccccceeEEee--eecccceeeeEecccCCCCEEEEEEE
Confidence            68899998876554 5999998665  3444  4444444433322111111  11144567778899999999999999


Q ss_pred             EEeCCCCCCCCcceee
Q psy3718         331 ALNKLGPGPMSEEVKQ  346 (543)
Q Consensus       331 a~n~~G~s~~s~~~~~  346 (543)
                      |.|..|.|++++...+
T Consensus        76 A~n~~g~S~ws~s~~f   91 (98)
T d1fyhb1          76 ARVGQKESAYAKSEEF   91 (98)
T ss_dssp             EEETTEECCCEECCCB
T ss_pred             EEcCCcccCCccCCCc
Confidence            9999999988775544

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.60  E-value=8.4e-09  Score=76.54  Aligned_cols=82  Identities=17%  Similarity=0.158  Sum_probs=55.9

Q ss_pred             eeEeecCCCeEEEEEee-cc-CCceEEEccCCeecCCCC--------CCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718          60 NQTSRRGEPSVLQCEAK-GE-KPIGILWNMNNKRLDPKS--------DNRYTIREEILPNGVLSDLSIKRTERGDSALFT  129 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~-g~-p~~~i~W~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~  129 (543)
                      .+....|++++|.|... .. ....|.|++++..+..-.        +.+..    ...+   ++|+|.+++.+|+|.|+
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~----~~~n---gSL~I~nl~~~DsG~Y~   76 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFE----ILAN---GDLKIKNLTRDDSGTYN   76 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEE----ECTT---SCEEESSCCGGGCEEEE
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEE----ECCC---ccEEEeCCCHHHCEEEE
Confidence            46778999999999743 22 336899999887662111        11221    1233   37999999999999999


Q ss_pred             EEEecccce-eeeeeeeccc
Q psy3718         130 CEIKSQKIS-SQQMTYEASG  148 (543)
Q Consensus       130 C~a~n~~~s-v~~~~~~v~~  148 (543)
                      |.+.+..|. ..+..+.|.+
T Consensus        77 c~v~~~~g~~~~~~~~~L~V   96 (98)
T d1hnga1          77 VTVYSTNGTRILNKALDLRI   96 (98)
T ss_dssp             EEEEETTCCEEEEEEEEEEE
T ss_pred             EEEEeCCCCEEEEEEEEEEE
Confidence            999988775 2344554443

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=6.3e-08  Score=71.35  Aligned_cols=70  Identities=14%  Similarity=0.083  Sum_probs=46.5

Q ss_pred             CCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEE
Q psy3718         355 QPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVY  434 (543)
Q Consensus       355 ~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~  434 (543)
                      .+|.++++...+++++.|+|++|.    .+                                         .+..|+|+|
T Consensus         4 ~~P~nl~v~~~~~~~v~l~W~~p~----~~-----------------------------------------~~~~y~v~y   38 (95)
T d2b5ic1           4 WAPENLTLHKLSESQLELNWNNRF----LN-----------------------------------------HCLEHLVQY   38 (95)
T ss_dssp             CCCEEEEEEEEETTEEEEEEECSS----CS-----------------------------------------TTCEEEEEE
T ss_pred             cCCCCCEEEEEeCCEEEEEECCCC----Cc-----------------------------------------eeEEEEEEE
Confidence            388999999999999999999762    12                                         234455555


Q ss_pred             eeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEe
Q psy3718         435 GPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPR  475 (543)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A  475 (543)
                      +..+..  .....    .......+.+.+|.|+ .|.|+|+|
T Consensus        39 ~~~~~~--~~~~~----~~~~~~~~~~~~L~p~t~Y~frVRa   74 (95)
T d2b5ic1          39 RTDWDH--SWTEQ----SVDYRHKFSLPSVDGQKRYTFRVRS   74 (95)
T ss_dssp             EETTCS--SCEEE----EECSSCEEEECSCCTTSCEEEEEEE
T ss_pred             EcCCCc--eeeEe----eecccceeEcCCCCCCCEEEEEEEE
Confidence            554432  11111    1133344566699999 99999999

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=2.5e-08  Score=78.08  Aligned_cols=41  Identities=10%  Similarity=0.080  Sum_probs=34.2

Q ss_pred             CCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCC
Q psy3718         356 PPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSD  397 (543)
Q Consensus       356 ~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~  397 (543)
                      .|-++.+...++++|.|+|++|.. ..++.|.+|.|+|+...
T Consensus         4 ~plnl~~~~~sstsv~lsW~pP~~-~~~~~i~gY~I~y~~~~   44 (125)
T d2dtge3           4 ELLKFSYIRTSFDKILLRWEPYWP-PDFRDLLGFMLFYKEAP   44 (125)
T ss_dssp             CBCCCSEEEECSSCEEEECCCCCS-SSCCCEEEECCCSSSCC
T ss_pred             CCEEEEEEEecCCEEEEEEeCCCc-cCCCcEEEEEEEEEECC
Confidence            678999999999999999998743 34678999999997754

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=9.8e-08  Score=73.74  Aligned_cols=81  Identities=19%  Similarity=0.373  Sum_probs=58.1

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeeccCCceEEEcc--CCeecCC--------CC------------CCceEEeeeecC
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNM--NNKRLDP--------KS------------DNRYTIREEILP  108 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~~~i~~--------~~------------~~~~~~~~~~~~  108 (543)
                      +|.+...|..+.+.+|++++|.|.+.+.....+.|+|  .|..+..        ..            ..++....   .
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~---~   77 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMR---D   77 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEE---E
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEEC---C
Confidence            5888899999999999999999999887778899987  2322110        00            01222111   2


Q ss_pred             CCceeeEEEEeeecCCCccEEEEEec
Q psy3718         109 NGVLSDLSIKRTERGDSALFTCEIKS  134 (543)
Q Consensus       109 ~~~~~~L~i~~~~~~D~G~Y~C~a~n  134 (543)
                      .+....|+|.+++++|+|.|.|.+..
T Consensus        78 ~~~~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          78 TNNKYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             TTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEeEEEEcccccCCCEEEEeeEeC
Confidence            23345799999999999999998754

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=8.4e-08  Score=72.61  Aligned_cols=40  Identities=18%  Similarity=0.388  Sum_probs=26.1

Q ss_pred             CCCCCCCCcEE-EEeccCeEEEEccCCCCCCCCCceEEEEEEEE
Q psy3718         352 TPEQPPQDNTC-TTLTSQTIRVSWVSPPLITANGVIKGYKVVYG  394 (543)
Q Consensus       352 ~p~~~P~~~~~-~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~  394 (543)
                      .|+.+|.++++ ...+.++|+|+|.++.  +.++. ..|.+.|.
T Consensus         3 ~PP~~P~~v~~i~~~~~~sv~~sW~p~~--d~~~~-~~y~~~y~   43 (107)
T d1cd9b1           3 YPPASPSNLSCLMHLTTNSLVCQWEPGP--ETHLP-TSFILKSF   43 (107)
T ss_dssp             CCCCCCEEEEEEEETTTTEEEEEEECCS--CCSSC-CEEEEEEE
T ss_pred             CccCCCcCCEEEEecCCCEEEEEEcCCC--CCCCC-cceeEEEE
Confidence            45668999985 4567889999999762  22333 44555543

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=9e-08  Score=72.17  Aligned_cols=56  Identities=9%  Similarity=-0.044  Sum_probs=36.1

Q ss_pred             ceeEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCcccccccccc--CCCccc
Q psy3718         426 VIKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGE--SDKCKN  501 (543)
Q Consensus       426 ~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~--g~~~~~  501 (543)
                      .+..|+|+|+..+..  ....+.    ......+.+.+|.++ .|.|+|+|              .+..|.  |+.|..
T Consensus        40 ~~l~Y~v~y~~~~~~--~w~~~~----~~~~~~~~i~~L~~~t~Y~frVRa--------------~~~~~g~ws~wS~~   98 (106)
T d1axib2          40 MVLEYELQYKEVNET--KWKMMD----PILTTSVPVYSLKVDKEYEVRVRS--------------KQRNSGNYGEFSEV   98 (106)
T ss_dssp             CCEEEEEEEEETTCS--SCEECC----CBSSSEEEEEEEETTSCEEEEEEE--------------EETTSSCCCCCCCC
T ss_pred             eEEEEEEeeeecCCc--cceeee----ecccceEEECCCCCCCEEEEEEEE--------------EECCCCCCCCCCCC
Confidence            456677777766543  122111    134455667799999 99999999              886653  665554

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.7e-08  Score=79.32  Aligned_cols=102  Identities=14%  Similarity=0.144  Sum_probs=61.9

Q ss_pred             ccCCCCCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcce
Q psy3718         348 TAEGTPEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVI  427 (543)
Q Consensus       348 t~~~~p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i  427 (543)
                      +.+..|. .+....+..++.+++.|+|.+|.. ..++.+.+|.                                 ...+
T Consensus        13 ~~~~~~~-~~~~P~V~~v~~~sv~l~W~~P~~-~~~~~~~~~~---------------------------------~~~~   57 (137)
T d1wk0a_          13 AFEALLS-NIVKPVASDIQARTVVLTWSPPSS-LINGETDESS---------------------------------VPEL   57 (137)
T ss_dssp             HHHHHTT-CCCCCEEESCCSSCEEEECCCCCC-CSTTSSCSSC---------------------------------SCSC
T ss_pred             EeccCCC-CCCCCEEEEeEcCEEEEEEeCcCc-CCCceeeccc---------------------------------cceE
Confidence            3333343 344557888899999999998742 2222222111                                 1234


Q ss_pred             eEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccccc
Q psy3718         428 KGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDR  503 (543)
Q Consensus       428 ~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~  503 (543)
                      ..|.+.+...+.. .....+    .......+.+.+|+|+ .|.|+|+|              .|..|.|.++....
T Consensus        58 ~~y~v~~~~~~~~-~~~~~~----~~~~~~~~~i~~L~P~t~Y~f~V~A--------------~n~~G~g~~S~~~~  115 (137)
T d1wk0a_          58 YGYEVLISSTGKD-GKYKSV----YVGEETNITLNDLKPAMDYHAKVQA--------------EYNSIKGTPSEAEI  115 (137)
T ss_dssp             CEEEEEECSSCTT-SCCEEE----EEESCSEEEECSCCTTCEECEEEEE--------------EETTEECCCCCCCC
T ss_pred             EeeEEEEeeCCCC-ccEEEE----EecCccEEEECCCCCCcEEEEEEEE--------------EcCCcccCCCCCEE
Confidence            5677766554432 111111    1124445666799999 99999999              99999998876444

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.9e-07  Score=67.42  Aligned_cols=88  Identities=15%  Similarity=0.205  Sum_probs=59.0

Q ss_pred             CCCCeeeEEEec-CCCeEEEEeeCCCCCC--CCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEE
Q psy3718         249 SGPPTHIKVEAT-DQNTLKVSWSPPERDH--WNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQY  325 (543)
Q Consensus       249 ~~~P~~~~~~~~-~~~~i~l~W~~~~~~~--~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y  325 (543)
                      |.||.++.+... .+..+.|+|.+|....  .+.....|+|+|+..+..... .....      ...   ...|.|++.|
T Consensus         2 PdPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~~~~~-~~~~~------~~t---~~~L~p~~~Y   71 (94)
T d3d85d3           2 PDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKK-DRVFT------DKT---SATVICRKNA   71 (94)
T ss_dssp             CCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC-------CEEEE------SSS---EEEECCCSSC
T ss_pred             CCCCcccEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCCCccE-Eeccc------cce---EEEecCCCCE
Confidence            468999999876 4567999999997532  123468999999886654322 22111      112   2347899999


Q ss_pred             EEEEEEEeCCCCCCCCcceee
Q psy3718         326 SVVVQALNKLGPGPMSEEVKQ  346 (543)
Q Consensus       326 ~~~V~a~n~~G~s~~s~~~~~  346 (543)
                      .|+|+|.+..+.|.+|++..+
T Consensus        72 ~v~VRa~~~~~~g~WSeWS~~   92 (94)
T d3d85d3          72 SISVRAQDRYYSSSWSEWASV   92 (94)
T ss_dssp             EEEEEEEESSSCCCCCCCEEE
T ss_pred             EEEEEEecCCCCCCCccCcCC
Confidence            999999999999999988765

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.1e-07  Score=71.60  Aligned_cols=83  Identities=10%  Similarity=0.025  Sum_probs=54.2

Q ss_pred             CCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEE
Q psy3718         355 QPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVY  434 (543)
Q Consensus       355 ~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~  434 (543)
                      .||.++++..++++++.|+|.+|......                                         ..+..|.+.|
T Consensus         4 ~pP~~l~v~~~~~~s~~l~W~~p~~~~~~-----------------------------------------~~~~~~~v~~   42 (104)
T d2b5ib2           4 MAPISLQVVHVETHRCNISWEISQASHYF-----------------------------------------ERHLEFEART   42 (104)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECCSCCGGG-----------------------------------------TTCEEEEEEE
T ss_pred             CCCCCcEEEEEeCCEEEEEEccccccccc-----------------------------------------cceeEEEEEE
Confidence            38899999999999999999987432222                                         2334555555


Q ss_pred             eeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCcccccccccc
Q psy3718         435 GPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGE  495 (543)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~  495 (543)
                      ...+.. +......  ........+.+.+|+|+ .|.|+|+|              .+..|.
T Consensus        43 ~~~~~~-~~~~~~~--~~~~~~~~~~i~~L~p~t~Y~~rVra--------------~~~~g~   87 (104)
T d2b5ib2          43 LSPGHT-WEEAPLL--TLKQKQEWICLETLTPDTQYEFQVRV--------------KPLQGE   87 (104)
T ss_dssp             ECTTSC-STTSCCE--EECSCCCEEEECSCCTTCEEEEEEEE--------------EESCCS
T ss_pred             eccccc-ceeeeEE--ecCCCcEEEEECCCCCCCEEEEEEEE--------------EECCCC
Confidence            544432 1111110  11133444566699999 99999999              999986

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.55  E-value=1.4e-07  Score=73.91  Aligned_cols=79  Identities=15%  Similarity=0.217  Sum_probs=50.8

Q ss_pred             ceeEeecCCCeEEEEEeecc---CCceEEEccCCeec---------------CCCCCCceEEeeeecCCCceeeEEEEee
Q psy3718          59 RNQTSRRGEPSVLQCEAKGE---KPIGILWNMNNKRL---------------DPKSDNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g~---p~~~i~W~~~~~~i---------------~~~~~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      ..+.+..|++++|.|.+...   ....|.|++.+...               ......+..+.... ......+|.|.++
T Consensus        10 ~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~sL~I~~v   88 (126)
T d1pkoa_          10 HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKES-IGEGKVALRIQNV   88 (126)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTT-GGGTEEEEEESSC
T ss_pred             CCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeecc-ccCCeEEEEEEEE
Confidence            34788999999999998643   23578999864310               00011122221111 1122468999999


Q ss_pred             ecCCCccEEEEEecccce
Q psy3718         121 ERGDSALFTCEIKSQKIS  138 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n~~~s  138 (543)
                      +.+|+|.|.|.+.+..+.
T Consensus        89 ~~~D~G~Y~C~v~~~~~~  106 (126)
T d1pkoa_          89 RFSDEGGYTCFFRDHSYQ  106 (126)
T ss_dssp             CGGGCEEEEEEEEETTEE
T ss_pred             chhHCeEEEEEEEECCCE
Confidence            999999999999987555

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=3.2e-07  Score=70.21  Aligned_cols=88  Identities=11%  Similarity=0.020  Sum_probs=55.5

Q ss_pred             CCCCCCCcEEEEeccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEE
Q psy3718         353 PEQPPQDNTCTTLTSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKV  432 (543)
Q Consensus       353 p~~~P~~~~~~~~~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i  432 (543)
                      .+.||.++.+. .+++.+.|+|.+|......                                     ...+..+..|.|
T Consensus         5 kP~pP~nl~v~-~~~~~~~lsW~~P~~~~~~-------------------------------------~~~~~~~~~y~v   46 (114)
T d2gysa2           5 QPPEPRDLQIS-TDQDHFLLTWSVALGSPQS-------------------------------------HWLSPGDLEFEV   46 (114)
T ss_dssp             CCCCCEEEEEE-EETTEEEEEEECCC------------------------------------------CCSCGGGEEEEE
T ss_pred             cCCcCCCeEEE-EeCCEEEEECCCCcccccc-------------------------------------cceeeeEEEEEE
Confidence            34589999985 5667899999988321100                                     122345567778


Q ss_pred             EEeeCCCCCCCCCccceeeeeCCCCc--cccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCC
Q psy3718         433 VYGPSDTWYGHPGSFRNHCTWDPRGR--NMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESD  497 (543)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~  497 (543)
                      .|+..+..........     .....  +.+.+|.|+ .|.|+|+|              .+..|.|.
T Consensus        47 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~L~p~t~Y~~rVRa--------------~~~~g~~~   95 (114)
T d2gysa2          47 VYKRLQDSWEDAAILL-----SNTSQATLGPEHLMPSSTYVARVRT--------------RLAPGSRL   95 (114)
T ss_dssp             EEEETTSCSTTCEEEE-----ESSSEEEECTTTCCTTCEEEEEEEE--------------EECTTSSC
T ss_pred             EEeccCCceEEEEEee-----ccCceEEEEeCCCCCCcEEEEEEEE--------------EeCCCCCC
Confidence            7777655311111111     23333  444599999 99999999              99999754

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=6.4e-08  Score=72.83  Aligned_cols=79  Identities=19%  Similarity=0.237  Sum_probs=50.6

Q ss_pred             eEeecCCCeEEEEEeeccCCceEEEccCCeecC--------CCC-----CCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          61 QTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLD--------PKS-----DNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~--------~~~-----~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      ..+.+|++++|.|.........+.|+|......        ...     ...|.-+.....++   +|.|.+++.+|+|.
T Consensus         9 ~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ng---SL~I~~v~~~D~G~   85 (107)
T d1l6za1           9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG---SLLFQMITMKDMGV   85 (107)
T ss_dssp             SSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTS---CEEECSCCGGGCEE
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccc---cEEEcCCCchhCEE
Confidence            346799999999985444457999998543211        000     01111122223443   79999999999999


Q ss_pred             EEEEEecccceeeee
Q psy3718         128 FTCEIKSQKISSQQM  142 (543)
Q Consensus       128 Y~C~a~n~~~sv~~~  142 (543)
                      |+|.+.+..+...+.
T Consensus        86 Y~c~v~~~~~~~~~~  100 (107)
T d1l6za1          86 YTLDMTDENYRRTQA  100 (107)
T ss_dssp             EEEEEEETTEEECCC
T ss_pred             EEEEEEECCCCEEEE
Confidence            999998875543333

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=9.1e-07  Score=65.05  Aligned_cols=83  Identities=13%  Similarity=0.256  Sum_probs=56.8

Q ss_pred             EeCCCeEEeecceeEeecCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCC
Q psy3718          48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDS  125 (543)
Q Consensus        48 v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~  125 (543)
                      |+.||.+.+-+.. .+..|+.++|.|.+.|. |. ..|.|.+||.++.........    ...+|.........+.++|.
T Consensus         2 v~~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~----~~~dgty~~~s~l~v~~~~~   76 (100)
T d1k5nb_           2 IQRTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLS----FSKDWSFYLLYYTEFTPTEK   76 (100)
T ss_dssp             CCBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCE----ECTTSCEEEEEEEEECCCSS
T ss_pred             ccCCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCcccccee----cCCCCcEEEEEEeEECCCCC
Confidence            4567777664322 34678999999999995 43 799999999998532222221    12455555555556677888


Q ss_pred             ccEEEEEecc
Q psy3718         126 ALFTCEIKSQ  135 (543)
Q Consensus       126 G~Y~C~a~n~  135 (543)
                      +.|+|.+...
T Consensus        77 ~~ytC~V~H~   86 (100)
T d1k5nb_          77 DEYACRVNHV   86 (100)
T ss_dssp             CCEEEEEECT
T ss_pred             CEEEEEEEeC
Confidence            8999999885

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.39  E-value=5.8e-07  Score=68.18  Aligned_cols=80  Identities=16%  Similarity=0.187  Sum_probs=56.9

Q ss_pred             eEEeecceeEeecCCCeEEEEEeecc--CCceEEEcc--CCeec--CCCCCCceEEeeeecCCCceeeEEEEeeecCCCc
Q psy3718          53 EFEIKLRNQTSRRGEPSVLQCEAKGE--KPIGILWNM--NNKRL--DPKSDNRYTIREEILPNGVLSDLSIKRTERGDSA  126 (543)
Q Consensus        53 ~~~~~~~~~~v~~g~~~~l~C~~~g~--p~~~i~W~~--~~~~i--~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G  126 (543)
                      .+...|..+.+.+|++++|.|..++.  ....+.|+|  .+...  ......++.+..+  ......+|+|.+++++|+|
T Consensus         2 ~V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~l~~~Dsa   79 (113)
T d1vesa_           2 WVDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVN--KGSKSFSLRISDLRVEDSG   79 (113)
T ss_dssp             EEEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEE--TTTTEEEEEECSCCGGGCE
T ss_pred             ceEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeE--CCCCceeeeecccccCCcc
Confidence            45667889999999999999998764  345789996  33221  1223445554432  2334468999999999999


Q ss_pred             cEEEEEec
Q psy3718         127 LFTCEIKS  134 (543)
Q Consensus       127 ~Y~C~a~n  134 (543)
                      .|.|.+..
T Consensus        80 ~YyCa~~~   87 (113)
T d1vesa_          80 TYKCQAFY   87 (113)
T ss_dssp             EEEEEEEE
T ss_pred             eEeeeeec
Confidence            99999866

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.38  E-value=6.4e-07  Score=67.03  Aligned_cols=76  Identities=16%  Similarity=0.243  Sum_probs=55.0

Q ss_pred             EeecceeEeecCCCeEEEEEeeccCCceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEEEEeeec
Q psy3718          55 EIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTER  122 (543)
Q Consensus        55 ~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  122 (543)
                      +..|..+.+.+|++++|.|...+.....+.|+|-  +..+          ......++.+..    .+....|+|.++++
T Consensus         5 tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~----~~~~~~L~I~~~~~   80 (107)
T d1ospl1           5 SQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSD----SGKDYTLSITSLQT   80 (107)
T ss_dssp             ECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEC----SSSSEEEEESSCCG
T ss_pred             EeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceec----CCCeEEeEEccccc
Confidence            3457788899999999999987766667999972  2211          112234555532    34457899999999


Q ss_pred             CCCccEEEEEec
Q psy3718         123 GDSALFTCEIKS  134 (543)
Q Consensus       123 ~D~G~Y~C~a~n  134 (543)
                      +|+|.|.|.+..
T Consensus        81 ~Dsa~YyCa~~~   92 (107)
T d1ospl1          81 EDVATYFCQQYW   92 (107)
T ss_dssp             GGCSEEEEEECS
T ss_pred             ccCCcEEEeecc
Confidence            999999998765

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=9.6e-07  Score=67.08  Aligned_cols=80  Identities=23%  Similarity=0.361  Sum_probs=56.6

Q ss_pred             EEeecceeEeecCCCeEEEEEeecc-CCceEEEcc--CCeec-----------CCCCCCceEEeeeecCCCceeeEEEEe
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNM--NNKRL-----------DPKSDNRYTIREEILPNGVLSDLSIKR  119 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~--~~~~i-----------~~~~~~~~~~~~~~~~~~~~~~L~i~~  119 (543)
                      ++..|..+.+.+|++++|.|...+. ....+.|+|  .+...           ....+.++.+...  .++...+|.|.+
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~--~~~~~~~L~I~~   79 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQL--PNRHDFHMNILD   79 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEEC--TTSSEEEEEESS
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEe--CCCCEEEEEECc
Confidence            4567888999999999999998654 346789996  23211           1112345555432  344456799999


Q ss_pred             eecCCCccEEEEEecc
Q psy3718         120 TERGDSALFTCEIKSQ  135 (543)
Q Consensus       120 ~~~~D~G~Y~C~a~n~  135 (543)
                      ++++|+|.|.|.+...
T Consensus        80 ~~~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          80 TRRNDSGIYLCGAISL   95 (114)
T ss_dssp             CCGGGCEEEEEEEECS
T ss_pred             cCcCCCeEEEEEEEeC
Confidence            9999999999988653

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=4.7e-07  Score=76.53  Aligned_cols=122  Identities=15%  Similarity=0.053  Sum_probs=32.9

Q ss_pred             eEEEEEEEEEcCCCCCCCCccEEEeccCCC------CCCCCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEc
Q psy3718         218 KTYHIRIVAENEIGSSEPSDTVTILTAEEA------PSGPPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKET  291 (543)
Q Consensus       218 ~~y~~~v~a~n~~G~~~~s~~~~~~t~~~~------p~~~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~  291 (543)
                      +.|.+++.+.+..|.+..+...........      +...+..+.+.......+.+.|..+...  ......|.+.+...
T Consensus        64 ~~y~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  141 (196)
T d2dtge2          64 RTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPS--RKRRSLGDVGNAGN  141 (196)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEEEEEEEEcCCccccCcCCccceecCCCCccccccccCCcCcEEEeccCCceeecccCcCCC--ccceEEEEEEeecC
Confidence            889999999988877654433322221111      1112333444444555666667665332  11222222222222


Q ss_pred             CCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEEEEeCCCCCCC---Ccceeeec
Q psy3718         292 STDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQALNKLGPGPM---SEEVKQYT  348 (543)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~---s~~~~~~t  348 (543)
                      ......  ...     .....++.|.+|.|++.|.|+|+|+|..|.+..   +..+.++|
T Consensus       142 ~~~~~~--~~~-----~~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~~~~~s~s~~~~~rT  194 (196)
T d2dtge2         142 NEEHRP--FEK-----VVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSART  194 (196)
T ss_dssp             --CCSC--SCE-----ECSCSEEEECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEEEC
T ss_pred             CCccEE--EEe-----ccceEEEEECCCCCCCEEEEEEEEEECCCCCCCccCcceEEeeC
Confidence            221111  111     235678999999999999999999999987753   33444444

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.33  E-value=1.9e-07  Score=67.65  Aligned_cols=49  Identities=16%  Similarity=-0.023  Sum_probs=39.9

Q ss_pred             ccEEEeec-----CCCeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEEeC
Q psy3718           2 ENFFFYRG-----FNPRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSA   50 (543)
Q Consensus         2 ~~~~~~~~-----~~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~   50 (543)
                      |.++|++.     .+.++.+.+++|.|.+    |+|.|+|.|.|..|.. +++.|.|++
T Consensus        31 p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~A   89 (89)
T d1cs6a4          31 PAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA   89 (89)
T ss_dssp             CEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCCEEEEEEEEEEEC
Confidence            57899873     2456677889999999    9999999999999986 567888753

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.6e-07  Score=69.51  Aligned_cols=75  Identities=24%  Similarity=0.382  Sum_probs=50.1

Q ss_pred             eeEeecCCCeEEEEEeeccCCceEEEccCCeec--CCC----------CCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRL--DPK----------SDNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i--~~~----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      .+...+|++++|.|.........+.|++.....  ...          ...++......... ...+|.|.+++.+|+|.
T Consensus         3 ~V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~sL~I~~l~~~DsG~   81 (97)
T d2nxyb1           3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ-GNFPLIIKNLKIEDSDT   81 (97)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGG-TBCCEEECSCCGGGCEE
T ss_pred             EEEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCC-CEEEEEECCCChHHCEE
Confidence            356789999999999887777899999753311  000          11122221111111 23479999999999999


Q ss_pred             EEEEEecc
Q psy3718         128 FTCEIKSQ  135 (543)
Q Consensus       128 Y~C~a~n~  135 (543)
                      |.|.+.+.
T Consensus        82 Y~C~v~~~   89 (97)
T d2nxyb1          82 YICEVEDQ   89 (97)
T ss_dssp             EEEEETTE
T ss_pred             EEEEEecC
Confidence            99999885

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.32  E-value=2.3e-06  Score=62.72  Aligned_cols=82  Identities=18%  Similarity=0.249  Sum_probs=55.9

Q ss_pred             CCCeEEeecceeEeecCCCeEEEEEeecc-C-CceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          50 APPEFEIKLRNQTSRRGEPSVLQCEAKGE-K-PIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p-~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      .||.+.+-|.. .+..|+.++|.|.+.|. | .+.|.|++||.++..+..  .. ......+|.........+.++|.+.
T Consensus         2 ~pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~--~t-~~~~~~dgtf~~~s~l~v~~~~~~~   77 (100)
T d1muja1           2 EAPQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVY--ET-SFFVNRDYSFHKLSYLTFIPSDDDI   77 (100)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEE--EC-CCEECTTSCEEEEEEEEECCCTTCC
T ss_pred             CCCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCce--ee-eeEECCCCCEEEEEEeEEcCCCCCE
Confidence            47877775543 35678999999999995 4 489999999998853211  10 0111234555555555667788899


Q ss_pred             EEEEEecc
Q psy3718         128 FTCEIKSQ  135 (543)
Q Consensus       128 Y~C~a~n~  135 (543)
                      |+|+++..
T Consensus        78 ytC~V~H~   85 (100)
T d1muja1          78 YDCKVEHW   85 (100)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEEC
Confidence            99999985

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=7.7e-07  Score=66.46  Aligned_cols=77  Identities=14%  Similarity=0.217  Sum_probs=55.0

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEcc--CCeec----------CCCCCCceEEeeeecCCCceeeEEEEeee
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNM--NNKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      ++..|..+.+.+|++++|.|..+......+.|+|  .|...          ......++....    .+...+|.|.+++
T Consensus         4 ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~----~~~~~~L~I~~~~   79 (106)
T d1i8ka_           4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSG----TGTDFVFTIENTL   79 (106)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE----ETTEEEEEESSCC
T ss_pred             EEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeC----CCCeeeecccCCc
Confidence            3456788889999999999998766666799985  33321          111234454432    2234689999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      ++|+|.|-|.+.+
T Consensus        80 ~~Dsa~YyCa~~~   92 (106)
T d1i8ka_          80 SEDVGDYYCLQSF   92 (106)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             cccCEEEeEecCc
Confidence            9999999998765

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.4e-06  Score=65.95  Aligned_cols=75  Identities=11%  Similarity=0.138  Sum_probs=48.1

Q ss_pred             CCCCCcEEEEe--ccCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEE
Q psy3718         355 QPPQDNTCTTL--TSQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKV  432 (543)
Q Consensus       355 ~~P~~~~~~~~--~~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i  432 (543)
                      .||.++.+..+  +.+++.|+|++|...                                        ....+.+..|.+
T Consensus         9 ~PP~~l~v~~~~~~~~~l~l~W~~P~~~----------------------------------------~~~~~~~~~y~~   48 (109)
T d1uc6a_           9 DPPENVVARPVPSNPRRLEVTWQTPSTW----------------------------------------PDPESFPLKFFL   48 (109)
T ss_dssp             CCCEEEEEEECTTCTTCEEEEEECCTTC----------------------------------------CCTTTTTBCEEE
T ss_pred             CCCCCCEEEEEecCCCEEEEEEeCCccc----------------------------------------CCCCeeEEEEEE
Confidence            38888888765  457799999987321                                        111334456666


Q ss_pred             EEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEe
Q psy3718         433 VYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPR  475 (543)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A  475 (543)
                      +++..+..  ....+    .......+.+.+|.|+ .|.|+|+|
T Consensus        49 ~~~~~~~~--~~~~~----~~~~~~~~~i~~L~~~t~Y~~rVrA   86 (109)
T d1uc6a_          49 RYRPLILD--QWQHV----ELSNGTAHTITDAYAGKEYIIQVAA   86 (109)
T ss_dssp             EEEESSSC--CCCCE----EESSCSEEEETTCCSSSCEEEEEEC
T ss_pred             EEeecCCC--ceEEe----ccCCceeEEeCCCCCCCEEEEEEEE
Confidence            66665543  11111    1144555667799999 99999999

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.31  E-value=8.8e-07  Score=66.78  Aligned_cols=80  Identities=15%  Similarity=0.236  Sum_probs=56.1

Q ss_pred             EEeecceeEeecCCCeEEEEEeecc--CCceEEEccC--Ceec--CCCCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGE--KPIGILWNMN--NKRL--DPKSDNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~--p~~~i~W~~~--~~~i--~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      +...|..+.+.+|+.++|.|..++.  ....+.|+|.  |+..  ......++.....  ......+|+|.+++++|+|.
T Consensus         2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~--~~~~~~~L~I~~l~~~Dsa~   79 (112)
T d1sq2n_           2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVN--SGSKSFSLRINDLTVEDGGT   79 (112)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEE--TTTTEEEEEECSCCGGGCEE
T ss_pred             CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEe--cCCceeeeEecCCcCccCEE
Confidence            4567888889999999999988654  3478999972  2211  1123345554433  22334689999999999999


Q ss_pred             EEEEEecc
Q psy3718         128 FTCEIKSQ  135 (543)
Q Consensus       128 Y~C~a~n~  135 (543)
                      |.|.+...
T Consensus        80 YyCA~~~~   87 (112)
T d1sq2n_          80 YRCGLGVA   87 (112)
T ss_dssp             EEEEECBT
T ss_pred             EeEEEecC
Confidence            99987664

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=3.8e-06  Score=60.75  Aligned_cols=81  Identities=16%  Similarity=0.325  Sum_probs=54.1

Q ss_pred             eCCCeEEeecceeEeecCCCeEEEEEeec-cCC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCc
Q psy3718          49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKG-EKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSA  126 (543)
Q Consensus        49 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G  126 (543)
                      +.||.+.+.-    -..++.++|.|.+.| .|. +.|.|++||+.+.......-....  .+++.........+.+.|..
T Consensus         2 ~vpP~V~v~~----~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~--~~~~t~~~~s~l~v~~~~~~   75 (94)
T d1de4a1           2 QVPPLVKVTH----HVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLP--NGDGTYQGWITLAVPPGEEQ   75 (94)
T ss_dssp             CBCCEEEEEE----EECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEE--CTTSCEEEEEEEEECTTCGG
T ss_pred             CCCCEEEEEE----cCCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEe--CCCceEEEEEEEEECCCCCC
Confidence            3577765521    134678899999999 454 799999999998533211112221  24555555666667778889


Q ss_pred             cEEEEEecc
Q psy3718         127 LFTCEIKSQ  135 (543)
Q Consensus       127 ~Y~C~a~n~  135 (543)
                      .|+|.+...
T Consensus        76 ~ytC~V~H~   84 (94)
T d1de4a1          76 RYTCQVEHP   84 (94)
T ss_dssp             GEEEEEECT
T ss_pred             EEEEEEEeC
Confidence            999999985

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.30  E-value=8.3e-07  Score=67.56  Aligned_cols=80  Identities=23%  Similarity=0.338  Sum_probs=57.1

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEccCC--eecC----------CCCCCceEEeeeecCCCceeeEEEEeee
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNN--KRLD----------PKSDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~i~----------~~~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      +...|..+.+.+|++++|.|.........+.|++-.  ....          .....++.....  ......+|+|.+++
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~sL~i~~~~   80 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLD--ADTKQSSLHITASQ   80 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBC--SSSSEEEEEECSCC
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeec--CcccccccEEcccC
Confidence            456688899999999999999887667789999632  2110          001233443322  33456789999999


Q ss_pred             cCCCccEEEEEecc
Q psy3718         122 RGDSALFTCEIKSQ  135 (543)
Q Consensus       122 ~~D~G~Y~C~a~n~  135 (543)
                      ++|+|.|.|.+...
T Consensus        81 ~~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          81 LSDSASYICVVSDR   94 (114)
T ss_dssp             GGGCSEEEEEEECS
T ss_pred             hhhCcccceeeecC
Confidence            99999999999874

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.6e-06  Score=64.92  Aligned_cols=75  Identities=16%  Similarity=0.226  Sum_probs=44.0

Q ss_pred             CCCCCcEEEEec-cCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEE
Q psy3718         355 QPPQDNTCTTLT-SQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVV  433 (543)
Q Consensus       355 ~~P~~~~~~~~~-~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~  433 (543)
                      .||.++.+.... ...+.|.|.+|.. ...+                                         .+..|.|+
T Consensus         6 dPP~nl~v~~~~~~~~l~v~W~~P~~-~~~~-----------------------------------------~~~~Y~v~   43 (105)
T d1erna2           6 DAPVGLVARLADESGHVVLRWLPPPE-TPMT-----------------------------------------SHIRYEVD   43 (105)
T ss_dssp             CCCEEEEEEECCC-CCEEEEEECSSS-CSCG-----------------------------------------GGEEEEEE
T ss_pred             CCCCCCEEEEecCCCcEEEEeeeccc-cccc-----------------------------------------eEEEEEEE
Confidence            488999887764 4568999987632 2233                                         34455555


Q ss_pred             EeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEe
Q psy3718         434 YGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPR  475 (543)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A  475 (543)
                      |+..+.. ......   ........+.+.+|.|+ .|.|+|+|
T Consensus        44 y~~~~~~-~~~~~~---~~~~~~t~~~i~~L~p~t~Y~~rVRa   82 (105)
T d1erna2          44 VSAGNGA-GSVQRV---EILEGRTECVLSNLRGRTRYTFAVRA   82 (105)
T ss_dssp             EEEC-CC-CEEEEE---EECTTCCEEEECSCCSSCEEEEEEEE
T ss_pred             EecCCCC-CceEEE---eecCCccEEEEeCCCCCcEEEEEEEE
Confidence            5554432 111111   11123344566699999 99999999

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=5e-07  Score=66.90  Aligned_cols=31  Identities=13%  Similarity=-0.113  Sum_probs=25.7

Q ss_pred             cccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccccc
Q psy3718         459 NMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDR  503 (543)
Q Consensus       459 ~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~  503 (543)
                      +...+|.++ .|.|||+|              .|..|.|+++.+..
T Consensus        59 ~~~~~l~~~~~Y~fRV~A--------------~n~~g~S~ws~s~~   90 (98)
T d1fyhb1          59 ISDHVGDPSNSLWVRVKA--------------RVGQKESAYAKSEE   90 (98)
T ss_dssp             CGGGCCSTTSCEEEEEEE--------------EETTEECCCEECCC
T ss_pred             eEecccCCCCEEEEEEEE--------------EcCCcccCCccCCC
Confidence            344499999 99999999              99999998866444

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.29  E-value=1.6e-07  Score=68.49  Aligned_cols=48  Identities=13%  Similarity=0.055  Sum_probs=38.0

Q ss_pred             ccEEEeecCCC---eEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718           2 ENFFFYRGFNP---RILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS   49 (543)
Q Consensus         2 ~~~~~~~~~~~---~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~   49 (543)
                      +.++|++.++.   +....+++|.|.+    |+|.|+|.|.|..|.. .++.|.|+
T Consensus        35 p~i~W~k~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          35 PQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             CEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEEEEEecccccceEeeeeeeEEEeCCCCccCCEEEEEEEEECCCEEEEEEEEEEE
Confidence            57899885543   3335678999999    9999999999999986 55777775

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.28  E-value=1.9e-06  Score=63.33  Aligned_cols=83  Identities=17%  Similarity=0.318  Sum_probs=56.5

Q ss_pred             EeCCCeEEeecceeEeecCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCC
Q psy3718          48 SSAPPEFEIKLRNQTSRRGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDS  125 (543)
Q Consensus        48 v~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~  125 (543)
                      |+.+|.+.+-+.. ....|+.++|.|.+.|. |. ..|.|++||..+....  ....  ....+|.........+..+|.
T Consensus         1 v~~~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~--~~~~--~~~~dgtf~~~s~l~v~~~~~   75 (99)
T d1lk2b_           1 IQKTPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVE--MSDM--SFSKDWSFYILAHTEFTPTET   75 (99)
T ss_dssp             CCBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCE--EEEE--EECTTCCEEEEEEEEECCCSS
T ss_pred             CCCCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcE--ECce--eECCCCCEEEEEEeEecCcCC
Confidence            3567777664332 23568899999999995 44 7999999999885321  1111  123456555566666677888


Q ss_pred             ccEEEEEecc
Q psy3718         126 ALFTCEIKSQ  135 (543)
Q Consensus       126 G~Y~C~a~n~  135 (543)
                      +.|+|.+...
T Consensus        76 ~~ytC~V~H~   85 (99)
T d1lk2b_          76 DTYACRVKHD   85 (99)
T ss_dssp             CCEEEEEECT
T ss_pred             CEEEEEEEeC
Confidence            8999999875

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.28  E-value=1.3e-06  Score=65.08  Aligned_cols=77  Identities=19%  Similarity=0.263  Sum_probs=54.2

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEcc--CCeec----------CCCCCCceEEeeeecCCCceeeEEEEeee
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNM--NNKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      ++..|..+.+.+|++++|.|..+......+.|+|  .|..+          ......++....    .+....|.|.+++
T Consensus         4 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~l~   79 (107)
T d1c5cl1           4 LTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSR----SGSDYSLTISSLE   79 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEE----ETTEEEEEESSCC
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecc----cCCEEEEEEhhhc
Confidence            3456778889999999999998876667799996  33221          111223333321    2234689999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      ++|+|.|.|.+.+
T Consensus        80 ~~Dsa~YyCa~~~   92 (107)
T d1c5cl1          80 SEDFADYYCLQYA   92 (107)
T ss_dssp             GGGCSEEEEEECS
T ss_pred             ccCCeEEEEecCc
Confidence            9999999998765

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.27  E-value=2.7e-06  Score=64.92  Aligned_cols=80  Identities=14%  Similarity=0.296  Sum_probs=57.1

Q ss_pred             eEEeecceeEeecCCCeEEEEEeeccCCceEEEcc--CCeecC---------------CCCCCceEEeeeecCCCceeeE
Q psy3718          53 EFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNM--NNKRLD---------------PKSDNRYTIREEILPNGVLSDL  115 (543)
Q Consensus        53 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~~~i~---------------~~~~~~~~~~~~~~~~~~~~~L  115 (543)
                      .+...|..+.+.+|++++|.|...+.....+.|+|  .|+.+.               .....++.+..   .++....|
T Consensus         3 ~v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~---~~~~~~~L   79 (118)
T d2ij0c1           3 VVSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINH---ASPTLSTL   79 (118)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEE---CSSSEEEE
T ss_pred             cEEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeec---cccccccc
Confidence            35667888899999999999998776667899997  333211               00123444432   23445689


Q ss_pred             EEEeeecCCCccEEEEEecc
Q psy3718         116 SIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus       116 ~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      +|.+++++|+|.|.|.+...
T Consensus        80 ~i~~~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          80 TVTSAHPEDSGFYVCSALAG   99 (118)
T ss_dssp             EECSCCGGGCEEEEEEEECS
T ss_pred             cccccccccCceEEEEEecC
Confidence            99999999999999998654

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=6.1e-07  Score=66.35  Aligned_cols=87  Identities=13%  Similarity=0.065  Sum_probs=59.5

Q ss_pred             CCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECCCCCCCEEEEEEE
Q psy3718         251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSSLKTYTQYSVVVQ  330 (543)
Q Consensus       251 ~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~  330 (543)
                      +|.++++.... ....|.|+++...   +....|.|+|+..+...+..... .. ........+.+.+|.++..|.|||+
T Consensus         6 ~P~nv~~~s~n-~~~~L~W~pp~~~---g~~~~Y~Ve~~~~~~~~W~~v~~-c~-~~t~~~~~~~~~~l~~~~~Y~fRVr   79 (99)
T d1y6kr1           6 SPPSVWFEAEF-FHHILHWTPIPQQ---SESTCYEVALLRYGIESWNSISQ-CS-QTLSYDLTAVTLDLYHSNGYRARVR   79 (99)
T ss_dssp             CCSCEEEEEET-TEEEEEECCCTTC---CTTCEEEEEEEETTSCCCEEEEE-EE-SSSEEECGGGGTTGGGSSCEEEEEE
T ss_pred             CCCcceEEEEC-CEEEEEEcCCCCc---CCCCEEEEEEEECCCcceEEEEe-ec-cccccceeeeeeecCCCCEEEEEEE
Confidence            46699987654 4677999988765   23467999999876654332211 11 1111123345689999999999999


Q ss_pred             EEeCCCCCCCCcc
Q psy3718         331 ALNKLGPGPMSEE  343 (543)
Q Consensus       331 a~n~~G~s~~s~~  343 (543)
                      |.|..|.|.++..
T Consensus        80 A~n~~g~S~Ws~t   92 (99)
T d1y6kr1          80 AVDGSRHSQWTVT   92 (99)
T ss_dssp             EEETTEECCCEEC
T ss_pred             EEcCCCcCCCccc
Confidence            9999998877653

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.26  E-value=1.6e-06  Score=64.90  Aligned_cols=77  Identities=17%  Similarity=0.262  Sum_probs=54.8

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEEEEeee
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      ++..|..+.+.+|++++|.|.........+.|+|-  |+.+          ......++....    .+....|.|.+++
T Consensus         4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~----~~~~~~L~I~~~~   79 (107)
T d1j1pl_           4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG----SGTDFTLSINSVE   79 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE----ETTEEEEEESSCC
T ss_pred             EECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecc----cCCEEEEEEcccC
Confidence            34567888899999999999987665667999963  3221          011224555432    2344689999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      ++|+|.|-|.+.+
T Consensus        80 ~~Dsa~YyCa~~~   92 (107)
T d1j1pl_          80 TEDFGMYFCQQAN   92 (107)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             cCCCEEEEEEcCC
Confidence            9999999997755

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.25  E-value=5.5e-07  Score=68.45  Aligned_cols=80  Identities=21%  Similarity=0.319  Sum_probs=56.2

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEcc--CCeecCC------C----CCCceEEeeeecCCCceeeEEEEeee
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNM--NNKRLDP------K----SDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~~~i~~------~----~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      +...|..+.+.+|+.++|.|...+.....+.|+|  .|+.+..      .    ...++...  ........+|.|.+++
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~i~~~~   80 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNAS--LDKSSGRSTLYIAASQ   80 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEE--EETTTTEEEEEESSCC
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeee--eccCCCEEEeeeecCC
Confidence            4556888899999999999998877667899997  2322100      0    01222222  2234456789999999


Q ss_pred             cCCCccEEEEEecc
Q psy3718         122 RGDSALFTCEIKSQ  135 (543)
Q Consensus       122 ~~D~G~Y~C~a~n~  135 (543)
                      ++|+|.|.|.+...
T Consensus        81 ~~Dsg~YyCa~~~~   94 (113)
T d2bnqd1          81 PGDSATYLCAVRPT   94 (113)
T ss_dssp             GGGCEEEEEEEEES
T ss_pred             CCCCcEEeEeEecC
Confidence            99999999988754

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.25  E-value=1e-06  Score=67.11  Aligned_cols=79  Identities=16%  Similarity=0.232  Sum_probs=54.6

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEccC--CeecC----------CCCCCceEEeeeecCCCceeeEEEEeee
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRLD----------PKSDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i~----------~~~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      ++..|..+.+.+|++++|.|.........+.|+|.  +..+.          .....++.+...  .......|.|.+++
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~~~   81 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLH--KSSSSFHLQKSSAQ   81 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCB--GGGTBCCEEESSCC
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeecc--CCCCeEEeeccccc
Confidence            44567778899999999999988777788999873  22110          111233443322  12234579999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      ++|+|.|.|.+..
T Consensus        82 ~~Dsg~YyCa~~~   94 (115)
T d1lp9e1          82 LSDSALYYCALFL   94 (115)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCccceEEEEc
Confidence            9999999998755

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.25  E-value=2e-06  Score=64.29  Aligned_cols=78  Identities=14%  Similarity=0.257  Sum_probs=55.2

Q ss_pred             eEEeecceeEeecCCCeEEEEEeeccCCceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEEEEee
Q psy3718          53 EFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        53 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      .++..|..+.+.+|++++|.|.........+.|+|-  |..+          ......++....    ++....|+|.++
T Consensus         3 ~~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~l   78 (107)
T d1tjgl1           3 QLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSG----SGTEFTLTISTL   78 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE----ETTEEEEEESSC
T ss_pred             cEEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEec----cCCEEEEEeccc
Confidence            345668888999999999999987655678889863  3221          111223444332    234568999999


Q ss_pred             ecCCCccEEEEEec
Q psy3718         121 ERGDSALFTCEIKS  134 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n  134 (543)
                      +++|+|.|.|.+.+
T Consensus        79 ~~~DsA~YyCa~~~   92 (107)
T d1tjgl1          79 RPEDFATYYCQQLH   92 (107)
T ss_dssp             CGGGCSEEEEEECS
T ss_pred             eeCcCceEEEEECc
Confidence            99999999997654

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.24  E-value=1.6e-06  Score=64.68  Aligned_cols=77  Identities=19%  Similarity=0.226  Sum_probs=54.9

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEEEEeee
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      ++..|..+.+.+|++++|.|.........+.|++-  |..+          ......++....    ++...+|+|.+++
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~----s~~~~~L~I~~~~   78 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSG----SGRDYSFSISNLE   78 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE----ETTEEEEEECSCC
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeec----CCCEeeeEehhhc
Confidence            45568888999999999999987666667999972  2211          111223444432    2345689999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      ++|+|.|.|.+..
T Consensus        79 ~~DsA~YyCa~~~   91 (106)
T d1a0ql1          79 PEDIATYYCLQYY   91 (106)
T ss_dssp             GGGCSEEEEEECS
T ss_pred             ccCCEeEEEEEeC
Confidence            9999999998765

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.24  E-value=1.2e-06  Score=66.89  Aligned_cols=80  Identities=18%  Similarity=0.275  Sum_probs=54.9

Q ss_pred             EEeecceeEeecCCCeEEEEEeecc-CCceEEEcc--CCeecC-------------CCCCCceEEeeeecCCCceeeEEE
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNM--NNKRLD-------------PKSDNRYTIREEILPNGVLSDLSI  117 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~--~~~~i~-------------~~~~~~~~~~~~~~~~~~~~~L~i  117 (543)
                      ++..|..+.+.+|++++|.|...+. ....+.|+|  .+..+.             .....|+.+...  ......+|+|
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~--~~~~~~~L~I   80 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHI--LTQKAFHLVI   80 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEE--GGGTEEEEEE
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEec--CceeEEeeee
Confidence            4556778889999999999998654 457899986  222110             001235554432  1233457999


Q ss_pred             EeeecCCCccEEEEEecc
Q psy3718         118 KRTERGDSALFTCEIKSQ  135 (543)
Q Consensus       118 ~~~~~~D~G~Y~C~a~n~  135 (543)
                      .+++.+|+|.|.|.+...
T Consensus        81 ~~~~~~Dsg~YyCa~~~~   98 (116)
T d1tvda_          81 SPVRTEDSATYYCAFTLP   98 (116)
T ss_dssp             SSCCGGGCEEEEEEEECT
T ss_pred             cCccccccccceeeEecC
Confidence            999999999999987663

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.2e-06  Score=65.13  Aligned_cols=51  Identities=10%  Similarity=0.016  Sum_probs=32.0

Q ss_pred             eeEEEEEEeeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCcccccccccc
Q psy3718         427 IKGYKVVYGPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGE  495 (543)
Q Consensus       427 i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~  495 (543)
                      +..|+|+|+.....+.....    ........+.+.+|+|+ .|.|+|+|              .+..|.
T Consensus        35 ~~~Y~v~y~~~~~~~~~~~~----~~~~~~~~~~l~~L~p~t~Y~~rVRa--------------~~~~g~   86 (100)
T d2gysa4          35 DHTFEIQYRKDTATWKDSKT----ETLQNAHSMALPALEPSTRYWARVRV--------------RTSRTG   86 (100)
T ss_dssp             CEEEEEEEECSSSCSTTSCE----EEEESCSEEECCCCCSSCCCEEEEEE--------------EECCTT
T ss_pred             ceEEEEEEeecccceeceee----cccCCceEEEeCCCCCCCeEEEEEEE--------------EECCCC
Confidence            35677777655443111111    11134455666699999 99999999              988874

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.23  E-value=1.9e-06  Score=65.71  Aligned_cols=78  Identities=21%  Similarity=0.279  Sum_probs=52.8

Q ss_pred             EeecceeEeecCCCeEEEEEeecc-CCceEEEccCC-----eecC------CC---------CCCceEEeeeecCCCcee
Q psy3718          55 EIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMNN-----KRLD------PK---------SDNRYTIREEILPNGVLS  113 (543)
Q Consensus        55 ~~~~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~~-----~~i~------~~---------~~~~~~~~~~~~~~~~~~  113 (543)
                      +..|..+.+.+|++++|.|.+.+. ....+.|+|-.     +.+.      ..         +..++.+..  ..+....
T Consensus         2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~   79 (115)
T d2atpb1           2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILE--SSDSRRP   79 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEE--STTSSSC
T ss_pred             EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEE--eCCCCeE
Confidence            456788899999999999998874 44678999631     1110      00         112222221  1334456


Q ss_pred             eEEEEeeecCCCccEEEEEec
Q psy3718         114 DLSIKRTERGDSALFTCEIKS  134 (543)
Q Consensus       114 ~L~i~~~~~~D~G~Y~C~a~n  134 (543)
                      .|+|.+++++|+|.|.|.+..
T Consensus        80 ~L~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          80 FLSIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             EEeecccCCCCCcEEEEeEcC
Confidence            799999999999999998764

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=4.4e-07  Score=65.84  Aligned_cols=48  Identities=15%  Similarity=-0.072  Sum_probs=37.8

Q ss_pred             ccEEEeecCC----CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718           2 ENFFFYRGFN----PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS   49 (543)
Q Consensus         2 ~~~~~~~~~~----~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~   49 (543)
                      +.++|++..+    .+....+++|.|.+    |+|.|+|.|.|..|.. .++.|.|+
T Consensus        33 ~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~   89 (89)
T d1gl4b_          33 YTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ   89 (89)
T ss_dssp             CEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CEEEEecCCceeeccccEeeceEEEEecCCcccCEEEEEEEEECCCEEEEEEEEEEC
Confidence            5688987443    34556788999999    9999999999999976 45677763

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2e-06  Score=62.71  Aligned_cols=83  Identities=13%  Similarity=0.079  Sum_probs=48.7

Q ss_pred             CCCCcEEEEec-cCeEEEEccCCCCCCCCCceEEEEEEEEeCCcccCCCCCCccceEEEEeeCCCCCCCCcceeEEEEEE
Q psy3718         356 PPQDNTCTTLT-SQTIRVSWVSPPLITANGVIKGYKVVYGPSDTWYGDPKTDICTDIRASWVSPPLITANGVIKGYKVVY  434 (543)
Q Consensus       356 ~P~~~~~~~~~-~~~v~l~W~~p~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~g~i~~Y~i~~  434 (543)
                      ||.|+.+.... +..+.|+|.+|....                                       ...+.....|.|+|
T Consensus         4 PP~nl~v~~~~~~~~l~v~W~~P~~~~---------------------------------------~~~~~~~L~Yev~y   44 (94)
T d3d85d3           4 PPKNLQLKPLKNSRQVEVSWEYPDTWS---------------------------------------TPHSYFSLTFCVQV   44 (94)
T ss_dssp             CCEEEEEEEC----CEEEEEECCTTSC---------------------------------------SCTTTSCEEEEEEE
T ss_pred             CCcccEEEEecCCCeEEEEecCCCCcC---------------------------------------CCCCeEEEEEEEEE
Confidence            88999987653 466999999874221                                       11122345666666


Q ss_pred             eeCCCCCCCCCccceeeeeCCCCccccccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCcc
Q psy3718         435 GPSDTWYGHPGSFRNHCTWDPRGRNMYEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCK  500 (543)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~  500 (543)
                      +..+...+.  ...       ....+..+|.|+ .|.|+|+|              .+..|.|..|.
T Consensus        45 ~~~~~~~~~--~~~-------~~~~t~~~L~p~~~Y~v~VRa--------------~~~~~~g~WSe   88 (94)
T d3d85d3          45 QGKSKREKK--DRV-------FTDKTSATVICRKNASISVRA--------------QDRYYSSSWSE   88 (94)
T ss_dssp             ECC--------CEE-------EESSSEEEECCCSSCEEEEEE--------------EESSSCCCCCC
T ss_pred             EECCCCccE--Eec-------cccceEEEecCCCCEEEEEEE--------------ecCCCCCCCcc
Confidence            654432111  111       112233479999 99999999              99888887654

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.1e-06  Score=65.02  Aligned_cols=80  Identities=11%  Similarity=0.098  Sum_probs=53.1

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC  130 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  130 (543)
                      .|.+...|.. .|..|++++|.|.+.. +...+.|+|+|....... ....    ....+....+.|.+++.+|+|.|+|
T Consensus         7 kPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~-~~~~----~~~~~~~a~F~l~~vt~~~~G~Y~C   79 (99)
T d1ucta1           7 MPFISAKSSP-VIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREI-GRRL----KFWNETDPEFVIDHMDANKAGRYQC   79 (99)
T ss_dssp             CCCEEESSCS-EEETTCCEEEEECCCT-TCSEEEEEEEETTEEEEC-SEEC----C----CCCEEEECSCCGGGCEEEEE
T ss_pred             CCEEEecCCC-ceeCCCeEEEEEcCCC-CCcEEEEEECCCcCceec-cccc----cCCCCceEEEEecCCCHHHCceEEE
Confidence            5777777765 5889999999998753 456888988775321100 0000    0012233569999999999999999


Q ss_pred             EEecccc
Q psy3718         131 EIKSQKI  137 (543)
Q Consensus       131 ~a~n~~~  137 (543)
                      ...+...
T Consensus        80 ~y~~~~~   86 (99)
T d1ucta1          80 QYRIGHY   86 (99)
T ss_dssp             EEEETTT
T ss_pred             EEECCCc
Confidence            9887543

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2e-06  Score=65.82  Aligned_cols=78  Identities=14%  Similarity=0.237  Sum_probs=52.5

Q ss_pred             eecceeEeecCCCeEEEEEeecc---CCceEEEccCCe--e----------cCCCCCCceEEeeeecCCCceeeEEEEee
Q psy3718          56 IKLRNQTSRRGEPSVLQCEAKGE---KPIGILWNMNNK--R----------LDPKSDNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        56 ~~~~~~~v~~g~~~~l~C~~~g~---p~~~i~W~~~~~--~----------i~~~~~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      ..|+.+.+.+|++++|.|.....   ....+.|+|...  .          .......++.+...  ......+|.|.++
T Consensus         4 t~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~sL~I~~l   81 (116)
T d1xeda_           4 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNF--PENGTFVVNIAQL   81 (116)
T ss_dssp             BCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEE--TTTTEEEEEECSC
T ss_pred             cCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeee--CCCCEEEEEEhhh
Confidence            36788999999999999987533   224678986321  1          11112344544433  2334568999999


Q ss_pred             ecCCCccEEEEEecc
Q psy3718         121 ERGDSALFTCEIKSQ  135 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n~  135 (543)
                      +.+|+|.|.|.+...
T Consensus        82 ~~~DsG~Y~C~v~~~   96 (116)
T d1xeda_          82 SQDDSGRYKCGLGIN   96 (116)
T ss_dssp             CGGGCEEEEEEESCG
T ss_pred             CcCCCEEEEEEEEcC
Confidence            999999999988654

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.18  E-value=2.9e-06  Score=63.28  Aligned_cols=77  Identities=16%  Similarity=0.254  Sum_probs=54.8

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEEEEeee
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      ++..|..+.+.+|++++|.|...+.....+.|++-  ++.+          ......++....    ++....|.|.+++
T Consensus         3 ltQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~----~~~~~~L~I~~~~   78 (106)
T d1op3k1           3 MTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSG----SGTEFTLTISGLQ   78 (106)
T ss_dssp             EEEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE----ETTEEEEEEESCC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeec----cCCEEEEEEcccc
Confidence            34568889999999999999987666667899963  2211          111223444432    2344689999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      ++|+|.|-|.+..
T Consensus        79 ~~Dsa~YyCa~~~   91 (106)
T d1op3k1          79 FDDFATYHCQHYA   91 (106)
T ss_dssp             GGGCSEEEEEEEC
T ss_pred             ccCCCcEeeeeCC
Confidence            9999999998765

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.16  E-value=2.9e-06  Score=63.32  Aligned_cols=74  Identities=19%  Similarity=0.316  Sum_probs=51.8

Q ss_pred             ecceeEeecCCCeEEEEEeeccCCceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEEEEeeecCC
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTERGD  124 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D  124 (543)
                      .|..+.+.+|++++|.|...+.....+.|+|-  +...          ......++....    ++....|.|.+++++|
T Consensus         6 Qp~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~----~~~~~~L~I~~~~~~D   81 (106)
T d1lk3l1           6 QPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG----SGTDFTLTIDPVEADD   81 (106)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGG
T ss_pred             eCCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeec----CCCEEEeEECCcChhh
Confidence            34568899999999999998766678999963  2211          111223444432    2334689999999999


Q ss_pred             CccEEEEEec
Q psy3718         125 SALFTCEIKS  134 (543)
Q Consensus       125 ~G~Y~C~a~n  134 (543)
                      +|.|.|.+..
T Consensus        82 sa~YyCa~~~   91 (106)
T d1lk3l1          82 TAIYFCQQSW   91 (106)
T ss_dssp             CEEEEEEECS
T ss_pred             CCCccccccc
Confidence            9999997654

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.16  E-value=5.7e-07  Score=65.09  Aligned_cols=47  Identities=15%  Similarity=0.049  Sum_probs=36.6

Q ss_pred             ccEEEeecC----CCeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGF----NPRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~----~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      |+++|++..    +.++.+.+++|.|.+    |+|.|+|+|.|..|.. .++.|.|
T Consensus        33 p~v~W~~~~~~i~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          33 PNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV   88 (89)
T ss_dssp             CCCEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CEEEEEeCCccCccccEEEeeeeEEECCCChhhCEEEEEEEEECCCEEEEEEEEEE
Confidence            578898743    245566778899999    9999999999999976 4566665

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.16  E-value=4.5e-06  Score=62.25  Aligned_cols=77  Identities=18%  Similarity=0.305  Sum_probs=53.3

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEEEEeee
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      +...|..+.+.+|++++|.|.........+.|++-  +..+          ......++...    ..+...+|+|.+++
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~L~i~~l~   79 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGS----GSGTDFTLTISSLE   79 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE----ESSSEEEEEECSCC
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCcccccccc----CCCCEEEeEeeeeE
Confidence            44567888899999999999987766667999863  2211          00011222222    23445689999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      ++|+|.|.|.+.+
T Consensus        80 ~~Dsa~YyCA~~~   92 (108)
T d1jhll_          80 PEDFAMYICQQHN   92 (108)
T ss_dssp             TTCCSEEEEEECS
T ss_pred             eccceEEEEeeCC
Confidence            9999999997665

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.4e-06  Score=67.63  Aligned_cols=79  Identities=15%  Similarity=0.275  Sum_probs=50.6

Q ss_pred             ceeEeecCCCeEEEEEeeccCC----ceEEEccCCeecC-------------------CCCCCceEEeeeecCCCceeeE
Q psy3718          59 RNQTSRRGEPSVLQCEAKGEKP----IGILWNMNNKRLD-------------------PKSDNRYTIREEILPNGVLSDL  115 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g~p~----~~i~W~~~~~~i~-------------------~~~~~~~~~~~~~~~~~~~~~L  115 (543)
                      ..+.+.+|++++|.|.+...+.    ..+.|++......                   .....|..+...... ....+|
T Consensus        12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~-~~~~sL   90 (124)
T d1eaja_          12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLK-SGDASI   90 (124)
T ss_dssp             EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGG-GTBCCE
T ss_pred             ceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCC-CCEEEE
Confidence            4477899999999999875433    4688986321110                   001123332211111 123579


Q ss_pred             EEEeeecCCCccEEEEEecccce
Q psy3718         116 SIKRTERGDSALFTCEIKSQKIS  138 (543)
Q Consensus       116 ~i~~~~~~D~G~Y~C~a~n~~~s  138 (543)
                      +|.+++.+|+|.|.|.+.+..+.
T Consensus        91 ~I~~v~~~D~G~Y~C~v~~~~~~  113 (124)
T d1eaja_          91 NVTNLQLSDIGTYQCKVKKAPGV  113 (124)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEE
T ss_pred             EEcccEEccCEEEEEEEEECCCe
Confidence            99999999999999999987554

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=5.4e-06  Score=60.30  Aligned_cols=76  Identities=5%  Similarity=0.032  Sum_probs=53.7

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC  130 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  130 (543)
                      +|.+...|..+ |..|++++|.|.... ....+.|+|+|........       .....+....+.|.+++.+|+|.|+|
T Consensus         4 KPsLsa~P~~~-V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~-------~~~~~~~~a~F~i~~v~~~~~G~Y~C   74 (95)
T d1olla1           4 KPFIWAEPHFM-VPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-------KPPERINKVKFYIPDMNSRMAGQYSC   74 (95)
T ss_dssp             CCEEEEESCSE-EETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-------SSCTTCCEEEEEESSCCGGGCEEEEE
T ss_pred             CCEEEeeCCCc-ccCCCcEEEEEecCC-CccEEEEEECCCCcceeEE-------ccCCCccEEEEEEeeeecCCCceEEE
Confidence            57777777554 679999999998753 3467888888864321100       00112344579999999999999999


Q ss_pred             EEecc
Q psy3718         131 EIKSQ  135 (543)
Q Consensus       131 ~a~n~  135 (543)
                      ...+.
T Consensus        75 ~y~~~   79 (95)
T d1olla1          75 IYRVG   79 (95)
T ss_dssp             EEEET
T ss_pred             EeCCC
Confidence            98764

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.15  E-value=3.2e-06  Score=63.27  Aligned_cols=77  Identities=17%  Similarity=0.228  Sum_probs=54.6

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEEEEeee
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      ++..|..+.+.+|++++|.|.........+.|+|-  +...          ......++....    +.....|+|.+++
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~l~   79 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSG----SATDFTLTISSVQ   79 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCC
T ss_pred             EECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeec----cCCeeecEEHhhe
Confidence            34557788899999999999988766667999963  2211          111233444432    2344689999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      ++|+|.|.|.+..
T Consensus        80 ~~DSa~YyCa~~~   92 (107)
T d1kcvl1          80 ADDDADYYCGQSY   92 (107)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             ecCCceEEEEecC
Confidence            9999999998754

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.13  E-value=1.1e-06  Score=66.92  Aligned_cols=80  Identities=16%  Similarity=0.245  Sum_probs=53.9

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEcc--CCeecCC----CC-------CCceEEeeeecCCCceeeEEEEee
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNM--NNKRLDP----KS-------DNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~~~i~~----~~-------~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      ++..|..+.+.+|++++|.|.........+.|+|  .|+.+..    ..       ..++....  ........|+|.++
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~I~~~   80 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEF--KKSETSFHLTKPSA   80 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEEC--BGGGTBCCEEESSC
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEE--CCCCCEEEEeeccc
Confidence            4455778889999999999998876667899997  2322110    00       11222221  11223347999999


Q ss_pred             ecCCCccEEEEEecc
Q psy3718         121 ERGDSALFTCEIKSQ  135 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n~  135 (543)
                      +++|+|.|.|.+...
T Consensus        81 ~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          81 HMSDAAEYFCAVSES   95 (115)
T ss_dssp             CGGGCEEEEEEEESS
T ss_pred             cccCCccceeeecCC
Confidence            999999999998763

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=7.6e-07  Score=63.60  Aligned_cols=50  Identities=12%  Similarity=0.021  Sum_probs=40.0

Q ss_pred             ccEEEeecCCCeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCC
Q psy3718           2 ENFFFYRGFNPRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPP   52 (543)
Q Consensus         2 ~~~~~~~~~~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p   52 (543)
                      |.++|++. +......++.|.|.+    |+|.|+|.|.|..|.. .+..|.|.+.|
T Consensus        29 P~i~W~~~-~~~~~~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~~~~   83 (84)
T d2nxyb2          29 PSVQCRSP-RGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ   83 (84)
T ss_dssp             CEEEEECT-TCCEEEESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEECCC
T ss_pred             hheEEEee-cccceeeeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEEecC
Confidence            67899764 444566778999999    9999999999999886 55788887655

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.13  E-value=1.4e-06  Score=65.85  Aligned_cols=78  Identities=22%  Similarity=0.300  Sum_probs=52.7

Q ss_pred             EeecceeEeecCCCeEEEEEeeccCCceEEEccC--CeecCC------C----CCCceEEeeeecCCCceeeEEEEeeec
Q psy3718          55 EIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRLDP------K----SDNRYTIREEILPNGVLSDLSIKRTER  122 (543)
Q Consensus        55 ~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i~~------~----~~~~~~~~~~~~~~~~~~~L~i~~~~~  122 (543)
                      ...|..+.+.+|++++|.|...+.....+.|++-  |.....      .    ...++...  ....+...+|.|.++++
T Consensus         3 ~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~I~~~~~   80 (110)
T d1u3ha1           3 RQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIF--FNKREKKLSLHIADSQP   80 (110)
T ss_dssp             ECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEE--EETGGGEEEEEESSCCT
T ss_pred             EecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEE--ECCCCCeeEeEeccCCC
Confidence            4457778889999999999987766678999963  322110      0    01122211  11234456899999999


Q ss_pred             CCCccEEEEEec
Q psy3718         123 GDSALFTCEIKS  134 (543)
Q Consensus       123 ~D~G~Y~C~a~n  134 (543)
                      +|+|.|.|.+..
T Consensus        81 ~Dsa~YyCa~~~   92 (110)
T d1u3ha1          81 GDSATYFCAASA   92 (110)
T ss_dssp             TSCSEEEECCEE
T ss_pred             CCceeEeeeecC
Confidence            999999998754

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.13  E-value=1.6e-06  Score=66.01  Aligned_cols=79  Identities=16%  Similarity=0.233  Sum_probs=52.5

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEcc--CCeecC----C-CC------CCceEEeeeecCCCceeeEEEEee
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNM--NNKRLD----P-KS------DNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~~~i~----~-~~------~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      +...|..+.+.+|++++|.|.........+.|+|  .+....    . ..      ..+...  .....+....|+|.++
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~I~~~   80 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEA--EFSKSNSSFHLRKASV   80 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEE--ECBTTTTBCCEEESSC
T ss_pred             EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeE--EEeCcCCEEEEecccc
Confidence            3445667889999999999998776567888996  332110    0 00      011111  1123344568999999


Q ss_pred             ecCCCccEEEEEec
Q psy3718         121 ERGDSALFTCEIKS  134 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n  134 (543)
                      +++|+|.|.|.+..
T Consensus        81 ~~~Dsg~YyCa~~~   94 (115)
T d1i9ea_          81 HWSDSAVYFCAVSG   94 (115)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             cccccceecccccC
Confidence            99999999998764

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.12  E-value=3.9e-06  Score=62.82  Aligned_cols=77  Identities=16%  Similarity=0.234  Sum_probs=54.6

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEccC--Cee----c------CCCCCCceEEeeeecCCCceeeEEEEeee
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKR----L------DPKSDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~----i------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      ++..|..+.+.+|++++|.|.........+.|++-  ++.    +      ......++....    ++....|.|.+++
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~----~~~~~~L~I~~~~   79 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSG----SGTQFSLKINSLL   79 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCC
T ss_pred             EECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEec----cCCEEEEEEcccc
Confidence            44568888899999999999987665667999972  321    1      111223444332    2345689999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      ++|+|.|-|.+..
T Consensus        80 ~~DSa~YyCA~~~   92 (109)
T d1mqkl_          80 PEDFGSYYCQHHY   92 (109)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             ccCCeeEEEeeeC
Confidence            9999999998764

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.12  E-value=3.2e-06  Score=63.38  Aligned_cols=76  Identities=21%  Similarity=0.315  Sum_probs=52.4

Q ss_pred             EeecceeEeecCCCeEEEEEeecc-CCceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEEEEeee
Q psy3718          55 EIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        55 ~~~~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      +..|..+.+.+|++++|.|...+. ....+.|+|-  +..+          ......++....    .+....|.|.+++
T Consensus         5 tQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~----~~~~~~L~I~~~~   80 (108)
T d2fx7l1           5 TQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSG----SGTDFTLTISRLE   80 (108)
T ss_dssp             ECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE----ETTEEEEEESSCC
T ss_pred             EeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeec----CCCEEEEEehHhe
Confidence            455778889999999999997654 3457889963  3211          011123444332    2345689999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      ++|+|.|.|.+.+
T Consensus        81 ~~Dsa~YyCa~~~   93 (108)
T d2fx7l1          81 PEDFAVYYCQQYG   93 (108)
T ss_dssp             GGGCSEEEEEECS
T ss_pred             ecccEEEeeecCC
Confidence            9999999998754

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.11  E-value=4.8e-06  Score=62.50  Aligned_cols=77  Identities=14%  Similarity=0.245  Sum_probs=53.9

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEEEEeee
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      ++..|..+.+.+|++++|.|...+.....+.|++-  ++..          ......++....    ++....|+|.+++
T Consensus         6 ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~----~~~~~~L~I~~l~   81 (109)
T d1bwwa_           6 MTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSG----SGTDYTFTISSLQ   81 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCC
T ss_pred             EEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeC----CCCEeEEEEeece
Confidence            34457778899999999999988766667899962  2211          111123444332    2344689999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      ++|+|.|-|.+..
T Consensus        82 ~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          82 PEDIATYYCQQYQ   94 (109)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             eCcCceEEEeecC
Confidence            9999999998764

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.11  E-value=4.3e-06  Score=62.35  Aligned_cols=77  Identities=16%  Similarity=0.255  Sum_probs=53.4

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEEEEeee
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      ++..|..+.+.+|++++|.|.........+.|+|-  |...          ......++....    .+....|.|.+++
T Consensus         4 ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~----~~~~~~L~I~~~~   79 (107)
T d1mexl1           4 MTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSG----SGTDFTLTINNVQ   79 (107)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE----ETTEEEEEESSCC
T ss_pred             EEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecC----CCCeeeeeechhh
Confidence            34557778899999999999987665567999962  3221          001123444432    1234689999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      ++|+|.|.|.+..
T Consensus        80 ~~DsA~YyCa~~~   92 (107)
T d1mexl1          80 SEDLAEYFCQQYN   92 (107)
T ss_dssp             GGGCSEEEEEECS
T ss_pred             eecceeEEEeECC
Confidence            9999999997654

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3.7e-06  Score=63.78  Aligned_cols=78  Identities=18%  Similarity=0.307  Sum_probs=54.6

Q ss_pred             eEEeecceeEeecCCCeEEEEEeeccC-CceEEEccC--CeecC----------------CCCCCceEEeeeecCCCcee
Q psy3718          53 EFEIKLRNQTSRRGEPSVLQCEAKGEK-PIGILWNMN--NKRLD----------------PKSDNRYTIREEILPNGVLS  113 (543)
Q Consensus        53 ~~~~~~~~~~v~~g~~~~l~C~~~g~p-~~~i~W~~~--~~~i~----------------~~~~~~~~~~~~~~~~~~~~  113 (543)
                      .+...|.++.+.+|++++|.|.+.+.. ...+.|+|-  +..+.                .....++.+..    .+...
T Consensus         2 q~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~----~~~~~   77 (114)
T d1akjd_           2 QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKR----LGDTF   77 (114)
T ss_dssp             CEEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEE----ETTEE
T ss_pred             CeeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEEC----CCCCh
Confidence            456788999999999999999987643 457899972  21110                01123444432    12246


Q ss_pred             eEEEEeeecCCCccEEEEEec
Q psy3718         114 DLSIKRTERGDSALFTCEIKS  134 (543)
Q Consensus       114 ~L~i~~~~~~D~G~Y~C~a~n  134 (543)
                      +|+|.+++++|+|.|.|.+..
T Consensus        78 ~L~I~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          78 VLTLSDFRRENEGYYFCSALS   98 (114)
T ss_dssp             EEEESSCCGGGCEEEEEEEEE
T ss_pred             hcEEccCCCCCCEEEeEeEcC
Confidence            899999999999999998865

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.10  E-value=1.8e-06  Score=64.55  Aligned_cols=77  Identities=16%  Similarity=0.261  Sum_probs=54.3

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEEEEeee
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      ++..|..+.+.+|++++|.|..+......+.|++-  |+.+          ......++....    .+....|.|.+++
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~----~~~~~~L~I~~~~   79 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSG----SGTDYSLTISNLE   79 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEE----ETTEEEEECSCCC
T ss_pred             EECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEc----cCCEEEEEEeEee
Confidence            44567888899999999999987776677999963  3221          111223443322    2334689999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      ++|+|.|.|.+..
T Consensus        80 ~~Dsa~YyCa~~~   92 (107)
T d3cx5k1          80 PEDIATYFCQHHI   92 (107)
T ss_dssp             SCCCSEEEEEECS
T ss_pred             ecCCCcEEeeeCC
Confidence            9999999997654

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.2e-05  Score=58.31  Aligned_cols=80  Identities=20%  Similarity=0.349  Sum_probs=55.9

Q ss_pred             eCCCeEEeecceeEeecCCCeEEEEEeec-cCC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCc
Q psy3718          49 SAPPEFEIKLRNQTSRRGEPSVLQCEAKG-EKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSA  126 (543)
Q Consensus        49 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G  126 (543)
                      +.||.+.+...   ...|+.++|.|.+.| .|. +.|.|++||..+....  ...  .....++.........+...|..
T Consensus         1 ~~PP~V~v~~~---~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~--~~~--~~~~~~~t~~~~s~l~~~~~~~~   73 (94)
T d1t7va1           1 QDPPSVVVTSH---QAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPEL--RGD--VLHNGNGTYQSWVVVAVPPQDTA   73 (94)
T ss_dssp             CBCCEEEEEEE---ECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSE--EEE--EEETTTTEEEEEEEEEECTTCCS
T ss_pred             CcCCEeEEecc---CCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcE--Eee--eecCCCCeEEEEEEeEeCCCCCC
Confidence            35777766322   235889999999999 454 7999999999875321  111  12234566666677777788888


Q ss_pred             cEEEEEecc
Q psy3718         127 LFTCEIKSQ  135 (543)
Q Consensus       127 ~Y~C~a~n~  135 (543)
                      .|+|.+...
T Consensus        74 ~ytC~V~H~   82 (94)
T d1t7va1          74 PYSCHVQHS   82 (94)
T ss_dssp             CEEEEEEET
T ss_pred             EEEEEEEEC
Confidence            999999875

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.09  E-value=2.9e-06  Score=64.51  Aligned_cols=80  Identities=15%  Similarity=0.220  Sum_probs=53.5

Q ss_pred             EEeecceeEeecCCCeEEEEEeecc-CCceEEEcc--CCeecCC------CC-----CCceEEeeeecCCCceeeEEEEe
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGE-KPIGILWNM--NNKRLDP------KS-----DNRYTIREEILPNGVLSDLSIKR  119 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~--~~~~i~~------~~-----~~~~~~~~~~~~~~~~~~L~i~~  119 (543)
                      ++..|..+.+.+|++++|.|..... ....+.|+|  .+..+..      ..     ..+..+.  ....+....|.|.+
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~I~~   80 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWN--FQKSTSSFNFTITA   80 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEE--EETTTTEEEEEESS
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEE--EcCCCCEEEEeecc
Confidence            4556778889999999999986643 345789997  2322110      00     1122222  12344567899999


Q ss_pred             eecCCCccEEEEEecc
Q psy3718         120 TERGDSALFTCEIKSQ  135 (543)
Q Consensus       120 ~~~~D~G~Y~C~a~n~  135 (543)
                      ++++|+|.|.|.+...
T Consensus        81 ~~~~Dsg~YyCa~~~~   96 (114)
T d2ak4d1          81 SQVVDSAVYFCALSGF   96 (114)
T ss_dssp             CCGGGCEEEEEEEECS
T ss_pred             cccccCCCceEeCCCC
Confidence            9999999999987664

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.09  E-value=4.4e-06  Score=63.01  Aligned_cols=79  Identities=20%  Similarity=0.296  Sum_probs=54.6

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEcc--CCeecCC------C----CCCceEEeeeecCCCceeeEEEEeee
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNM--NNKRLDP------K----SDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~~~i~~------~----~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      +...|..+.+.+|++++|.|...+.....+.|++  .|+....      .    ...++.....  ..+...+|.|.+++
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~~~   80 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLN--KSAKHLSLHIVPSQ   80 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEE--TTTTEEEEEESSCC
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEE--ccCCEEEEEECCCc
Confidence            3445677888999999999998776667789996  3332210      0    0123333222  34556899999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      ++|+|.|.|.+..
T Consensus        81 ~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          81 PGDSAVYFCAAME   93 (111)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             ccccEEEEeeccC
Confidence            9999999998764

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=8.8e-07  Score=64.07  Aligned_cols=47  Identities=11%  Similarity=-0.163  Sum_probs=35.4

Q ss_pred             ccEEEeecCCC----eEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGFNP----RILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~~~----~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      ++++|++.+..    +....++.|+|.+    |+|.|+|+|.|..|.. .++.|.|
T Consensus        34 p~v~W~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l~V   89 (90)
T d1gsma1          34 ASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV   89 (90)
T ss_dssp             CEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cEEEEEEeeeeeeeeeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEEEEE
Confidence            57899875553    2223356899999    9999999999998875 5567766

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=6.4e-06  Score=60.61  Aligned_cols=29  Identities=14%  Similarity=-0.025  Sum_probs=24.6

Q ss_pred             cccccCc-eeeEEEEeCCCCCCCCCCccccccccccCCCccccc
Q psy3718         461 YEELKSQ-GRGYLVPRGGPPPCPGSDETLYSRHRGESDKCKNDR  503 (543)
Q Consensus       461 ~~~L~p~-~Y~~~v~A~~~~~~~~~~~~~~~~~~G~g~~~~~~~  503 (543)
                      +.+|.++ .|.|||+|              .|..|.|+.+.+..
T Consensus        65 ~~~l~~~~~Y~fRVrA--------------~n~~g~S~Ws~t~~   94 (99)
T d1y6kr1          65 TLDLYHSNGYRARVRA--------------VDGSRHSQWTVTNT   94 (99)
T ss_dssp             GTTGGGSSCEEEEEEE--------------EETTEECCCEECSS
T ss_pred             eeecCCCCEEEEEEEE--------------EcCCCcCCCcccCc
Confidence            3499999 99999999              99999998866543

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.07  E-value=7.1e-06  Score=61.18  Aligned_cols=77  Identities=17%  Similarity=0.221  Sum_probs=54.0

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEEEEeee
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      ++..|..+.+.+|++++|.|..+......+.|++.  +...          ......++....    ++....|.|.+++
T Consensus         4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~----~~~~~~L~I~~~~   79 (107)
T d1d5il1           4 MTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSG----SGQDYSLTISSLE   79 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE----ETTEEEEEESSCC
T ss_pred             EEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecc----cCCEEEccccccC
Confidence            44567888899999999999987766677899863  2211          011123444332    2334689999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      ++|+|.|-|.+..
T Consensus        80 ~~Dsa~YyCa~~~   92 (107)
T d1d5il1          80 YEDMGIYYCLQYD   92 (107)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             CcCCEEEEeeecc
Confidence            9999999997655

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.06  E-value=1.2e-06  Score=65.22  Aligned_cols=73  Identities=15%  Similarity=0.261  Sum_probs=50.6

Q ss_pred             cceeEeecCCCeEEEEEeeccCCceEEEccC--CeecC----------CCCCCceEEeeeecCCCceeeEEEEeeecCCC
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRLD----------PKSDNRYTIREEILPNGVLSDLSIKRTERGDS  125 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i~----------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~  125 (543)
                      |..+.+.+|++++|.|.........+.|+|-  |..+.          .....++..+.    +.....|.|.+++++|+
T Consensus         5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~l~~~Ds   80 (103)
T d8faba1           5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSST----SGTTVTLTISGVQAEDE   80 (103)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE----ETTEEEEEETTCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECC----CCCccCceEcCcchhHC
Confidence            4478889999999999987665567899963  22210          00122333322    23457899999999999


Q ss_pred             ccEEEEEec
Q psy3718         126 ALFTCEIKS  134 (543)
Q Consensus       126 G~Y~C~a~n  134 (543)
                      |.|.|.+..
T Consensus        81 a~YyCA~~~   89 (103)
T d8faba1          81 ADYYCQAWD   89 (103)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEEeeecC
Confidence            999997654

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=6.8e-06  Score=61.68  Aligned_cols=76  Identities=17%  Similarity=0.253  Sum_probs=51.0

Q ss_pred             cceeEeecCCCeEEEEEeeccC--CceEEEccC--Cee---c-------CCCCCCceEEeeeecCCCceeeEEEEeeecC
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGEK--PIGILWNMN--NKR---L-------DPKSDNRYTIREEILPNGVLSDLSIKRTERG  123 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~p--~~~i~W~~~--~~~---i-------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  123 (543)
                      ++.+.+.+|++++|.|......  ...+.|+|.  +..   |       ......++.+...  ......+|.|.+++++
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~l~~~   80 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDD--PDAGFFTVTMTDLREE   80 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEE--TTTTEEEEEECSCCGG
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeee--CCCCEEEEEEhhhCCC
Confidence            4557889999999999875432  346789873  211   1       1112244554433  2344578999999999


Q ss_pred             CCccEEEEEecc
Q psy3718         124 DSALFTCEIKSQ  135 (543)
Q Consensus       124 D~G~Y~C~a~n~  135 (543)
                      |+|.|.|.....
T Consensus        81 DsG~Y~C~v~~~   92 (108)
T d1hkfa_          81 DSGHYWCRIYRP   92 (108)
T ss_dssp             GCEEEEEEEECT
T ss_pred             CCEEEEEEEecC
Confidence            999999988753

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.05  E-value=9.9e-06  Score=60.86  Aligned_cols=76  Identities=14%  Similarity=0.160  Sum_probs=51.6

Q ss_pred             EeecceeEeecCCCeEEEEEeecc----CCceEEEcc--CCeecC----------CCCCCceEEeeeecCCCceeeEEEE
Q psy3718          55 EIKLRNQTSRRGEPSVLQCEAKGE----KPIGILWNM--NNKRLD----------PKSDNRYTIREEILPNGVLSDLSIK  118 (543)
Q Consensus        55 ~~~~~~~~v~~g~~~~l~C~~~g~----p~~~i~W~~--~~~~i~----------~~~~~~~~~~~~~~~~~~~~~L~i~  118 (543)
                      +..|..+.+.+|++++|.|.....    ....+.|++  .|+.+.          .....++...    .++....|.|.
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~----~~~~~~~L~I~   80 (111)
T d1j05a_           5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGT----GSRTDFTLIID   80 (111)
T ss_dssp             EEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE----CSSSEEEEEES
T ss_pred             EccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEe----cCCCEEEEEEc
Confidence            455777888999999999987532    224589996  343211          0112233332    34456789999


Q ss_pred             eeecCCCccEEEEEec
Q psy3718         119 RTERGDSALFTCEIKS  134 (543)
Q Consensus       119 ~~~~~D~G~Y~C~a~n  134 (543)
                      +++++|+|.|.|.+.+
T Consensus        81 ~~~~~Dsa~YyCa~~~   96 (111)
T d1j05a_          81 PVEADDVATYYCQQTN   96 (111)
T ss_dssp             SCCGGGCEEEEEEECS
T ss_pred             ccccccCccEEEeecC
Confidence            9999999999998765

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=3.6e-06  Score=61.78  Aligned_cols=51  Identities=18%  Similarity=0.076  Sum_probs=37.7

Q ss_pred             ccEEEeecCC------CeEE-ecCceEEEec----CCeEEEEEEecCCCCC--CCceEEEeCCC
Q psy3718           2 ENFFFYRGFN------PRIL-LGRVLLPIGE----SSFHFDPELLNPSFNG--FPPLLLSSAPP   52 (543)
Q Consensus         2 ~~~~~~~~~~------~~~~-~~~g~L~I~~----D~G~Y~C~a~n~~g~~--~s~~l~v~~~p   52 (543)
                      +.++|++...      ++.+ ..+++|.|.+    |+|.|+|.|.|..|..  ..+.|.|..+|
T Consensus        32 ~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          32 ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP   95 (96)
T ss_dssp             CEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEECCSC
T ss_pred             CCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEEEcCC
Confidence            3577876332      2222 3356999998    9999999999999986  34799998887

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=3.8e-06  Score=62.25  Aligned_cols=51  Identities=10%  Similarity=-0.094  Sum_probs=37.9

Q ss_pred             ccEEEeecCC-----CeEEe--c-C-ceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCC
Q psy3718           2 ENFFFYRGFN-----PRILL--G-R-VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPP   52 (543)
Q Consensus         2 ~~~~~~~~~~-----~~~~~--~-~-g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p   52 (543)
                      +.++|+++..     .++.+  . + .+|.|.+    |+|.|+|.|.|..|.. .++.|.|..+|
T Consensus        30 p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P   94 (101)
T d2cqva1          30 ITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP   94 (101)
T ss_dssp             CEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSC
T ss_pred             CEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEEEEEecC
Confidence            4678987432     23322  2 2 2799999    9999999999999986 67899997765

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.04  E-value=3.9e-06  Score=63.88  Aligned_cols=80  Identities=13%  Similarity=0.243  Sum_probs=53.7

Q ss_pred             EEeecceeEeecCCCeEEEEEeec-cCCceEEEccC--CeecC-----------CCCCCceEEeeeecCCCceeeEEEEe
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKG-EKPIGILWNMN--NKRLD-----------PKSDNRYTIREEILPNGVLSDLSIKR  119 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g-~p~~~i~W~~~--~~~i~-----------~~~~~~~~~~~~~~~~~~~~~L~i~~  119 (543)
                      ++..|..+.+.+|++++|.|.... .....+.|+|-  +..+.           .....++.+...  ......+|.|.+
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~   79 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQ--KPKSSIGLIITA   79 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEE--GGGTEEEEEECS
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEe--ccCCEEEEEECC
Confidence            455677889999999999998764 34457899972  22110           001133444322  233456899999


Q ss_pred             eecCCCccEEEEEecc
Q psy3718         120 TERGDSALFTCEIKSQ  135 (543)
Q Consensus       120 ~~~~D~G~Y~C~a~n~  135 (543)
                      ++++|+|.|.|.+...
T Consensus        80 ~~~~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          80 TQIEDSAVYFCAMRGD   95 (115)
T ss_dssp             CCGGGCEEEEEEEECC
T ss_pred             CCccccccccceeecC
Confidence            9999999999987653

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.03  E-value=2.4e-05  Score=56.84  Aligned_cols=82  Identities=21%  Similarity=0.285  Sum_probs=52.7

Q ss_pred             CCCeEEeecceeEeecCCCeEEEEEeecc-C-CceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          50 APPEFEIKLRNQTSRRGEPSVLQCEAKGE-K-PIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p-~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      .||.+.+.+.. .+..++.++|.|.+.|. | .+.|.|++||..+..+... .....  -.+|.........+..++...
T Consensus         2 ~PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~-~~~~~--~~dgty~~~s~L~v~~~~~~~   77 (98)
T d1hdmb1           2 RPPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAH-KTAQP--NGDWTYQTLSHLALTPSYGDT   77 (98)
T ss_dssp             BCCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSB-CCCEE--CSSSCEEEEEEEEECCCTTCC
T ss_pred             CCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEe-CceEE--CCCCCEEEEEEeEcCCCCCCE
Confidence            46766654332 24567889999999995 4 4899999999988533211 11111  134444444444556777789


Q ss_pred             EEEEEecc
Q psy3718         128 FTCEIKSQ  135 (543)
Q Consensus       128 Y~C~a~n~  135 (543)
                      |+|.+...
T Consensus        78 ytC~V~H~   85 (98)
T d1hdmb1          78 YTCVVEHI   85 (98)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEeC
Confidence            99999985

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.02  E-value=5.7e-06  Score=62.46  Aligned_cols=77  Identities=18%  Similarity=0.259  Sum_probs=51.4

Q ss_pred             eecceeEeecCCCeEEEEEeeccCC-ceEEEccC--CeecCC------C--CCCceEEeeeecCCCceeeEEEEeeecCC
Q psy3718          56 IKLRNQTSRRGEPSVLQCEAKGEKP-IGILWNMN--NKRLDP------K--SDNRYTIREEILPNGVLSDLSIKRTERGD  124 (543)
Q Consensus        56 ~~~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~~--~~~i~~------~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~D  124 (543)
                      ..|..+.+.+|++++|.|..++... ..+.|+|-  |+.+..      .  .....++  ....+.....|.|.+++++|
T Consensus         3 ~qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~D   80 (112)
T d1kgcd1           3 TQPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASL--AIAEDRKSSTLILHRATLRD   80 (112)
T ss_dssp             ECCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEE--EECTTSSEEEEEESSCCGGG
T ss_pred             ECCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccce--eecccCCeeEEEEeeccccc
Confidence            3466788899999999999876543 56899973  332210      0  1111111  12234455689999999999


Q ss_pred             CccEEEEEec
Q psy3718         125 SALFTCEIKS  134 (543)
Q Consensus       125 ~G~Y~C~a~n  134 (543)
                      +|.|.|.+..
T Consensus        81 sa~YyCa~~~   90 (112)
T d1kgcd1          81 AAVYYCILPL   90 (112)
T ss_dssp             CEEEEEECCC
T ss_pred             ceeEeeeEec
Confidence            9999997765

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.02  E-value=2.3e-05  Score=57.32  Aligned_cols=82  Identities=15%  Similarity=0.288  Sum_probs=51.6

Q ss_pred             CCCeEEeecceeEeecCCCeEEEEEeecc-C-CceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          50 APPEFEIKLRNQTSRRGEPSVLQCEAKGE-K-PIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p-~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      .||.+.+-+... +..|+.++|.|.+.|. | ...|.|++||+++..+.. .....  ...++.........+..++...
T Consensus         4 v~P~V~v~~~~~-~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~-~~~~~--~~~dgty~~~S~L~v~~~~~~~   79 (101)
T d1fnga1           4 VAPEVTVLSRSP-VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVS-ETVFL--PRDDHLFRKFHYLTFLPSTDDF   79 (101)
T ss_dssp             BCCEEEEEESSC-CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEE-ECCCE--ECSSSCEEEEEEEEECCCTTCC
T ss_pred             cCCeEEEeCCCc-ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcE-eCeEE--ECCCCcEEEEEEeEEcCCCCCE
Confidence            467666543322 3567889999999995 5 379999999998853211 11111  1134443344444455677789


Q ss_pred             EEEEEecc
Q psy3718         128 FTCEIKSQ  135 (543)
Q Consensus       128 Y~C~a~n~  135 (543)
                      |+|.+...
T Consensus        80 ytC~V~H~   87 (101)
T d1fnga1          80 YDCEVDHW   87 (101)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEEC
Confidence            99999885

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.01  E-value=1.4e-05  Score=60.86  Aligned_cols=79  Identities=19%  Similarity=0.318  Sum_probs=54.6

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccC--CceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEEEEe
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEK--PIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLSIKR  119 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p--~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~  119 (543)
                      ++..+..+.+.+|++++|.|...+..  ...+.|+|-  |+.+          ......++.+...  .......|.|.+
T Consensus         4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~--~~~~~~~L~i~~   81 (120)
T d1hxma1           4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDID--IAKNLAVLKILA   81 (120)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEE--GGGTEEEEEESS
T ss_pred             EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeecc--ccccceeccccc
Confidence            44556678889999999999998754  357999972  3211          1111235554433  223457899999


Q ss_pred             eecCCCccEEEEEec
Q psy3718         120 TERGDSALFTCEIKS  134 (543)
Q Consensus       120 ~~~~D~G~Y~C~a~n  134 (543)
                      ++++|+|.|.|....
T Consensus        82 ~~~~Dsa~YyCA~~~   96 (120)
T d1hxma1          82 PSERDEGSYYCACDT   96 (120)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             ccccCCceeecCccc
Confidence            999999999998755

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.01  E-value=4.1e-06  Score=64.31  Aligned_cols=80  Identities=18%  Similarity=0.265  Sum_probs=51.1

Q ss_pred             EEeecceeEeecCCCeEEEEEeecc----CCceEEEccCC--ee----c------------CCCCCCceEEeeeecCCCc
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGE----KPIGILWNMNN--KR----L------------DPKSDNRYTIREEILPNGV  111 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~----p~~~i~W~~~~--~~----i------------~~~~~~~~~~~~~~~~~~~  111 (543)
                      ++..|..+.+..|++++|.|.....    ....+.|++..  ..    +            ......|+.+....  ...
T Consensus         2 vv~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~   79 (119)
T d1neua_           2 VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDP--SWK   79 (119)
T ss_dssp             EEECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBG--GGT
T ss_pred             EEcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEEC--CCC
Confidence            3456778899999999999997532    23589998622  10    0            00011233322111  112


Q ss_pred             eeeEEEEeeecCCCccEEEEEecc
Q psy3718         112 LSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus       112 ~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      ..+|.|.+++.+|+|.|.|.+.+.
T Consensus        80 ~~sL~I~~v~~~DsG~Y~C~v~~~  103 (119)
T d1neua_          80 DGSIVIHNLDYSDNGTFTCDVKNP  103 (119)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEC-
T ss_pred             EEEEEECCCChHHCEEEEEEEEEC
Confidence            247999999999999999999874

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.00  E-value=6.2e-06  Score=62.02  Aligned_cols=79  Identities=10%  Similarity=0.199  Sum_probs=54.5

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEccC--CeecCC-----C-----CCCceEEeeeecCCCceeeEEEEeee
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRLDP-----K-----SDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i~~-----~-----~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      ++..|..+.+.+|++++|.|.........+.|+|-  |+.+..     .     ...++...  ...++....|.|.++.
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~--~~~~~~~~~L~i~~~~   80 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEAT--YNKEATSFHLQKASVQ   80 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEE--CBTTTTBCCEEEEEEC
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeee--ecCCCCEEeeeecCcC
Confidence            45567788899999999999887655567999972  321100     0     01233322  2234456789999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      ++|+|.|.|.+..
T Consensus        81 ~~Dsa~YyCA~~~   93 (110)
T d1ac6a_          81 ESDSAVYYCALSG   93 (110)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCCCcccceeecC
Confidence            9999999998764

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.00  E-value=2.3e-05  Score=57.09  Aligned_cols=82  Identities=16%  Similarity=0.228  Sum_probs=50.2

Q ss_pred             CCCeEEeecceeEeecCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          50 APPEFEIKLRNQTSRRGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      .+|.+.+-+.. ....++..+|.|.+.|. |. ..|.|++||..+....   ..-.....++|..+.+....+...+...
T Consensus         3 V~P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~---~~~~~~~~~dgtf~~~s~l~~~~~~~~~   78 (98)
T d1d5mb1           3 VYPEVTVYPAK-TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGV---VSTGLIQNGDWTFQTLVMLETVPRSGEV   78 (98)
T ss_dssp             BCCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSSE---EECCCEECSSSCEEEEEEEECCCCTTCE
T ss_pred             CCCEEEEECCC-ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCC---EECeEEeCCCcEEEEEEEeeEcCCCCCE
Confidence            35666554332 23346778999999994 44 7999999999885321   1100111245666666667778888899


Q ss_pred             EEEEEecc
Q psy3718         128 FTCEIKSQ  135 (543)
Q Consensus       128 Y~C~a~n~  135 (543)
                      |+|++...
T Consensus        79 ytC~V~H~   86 (98)
T d1d5mb1          79 YTCQVEHP   86 (98)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEEC
Confidence            99999885

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=97.99  E-value=2.3e-06  Score=61.53  Aligned_cols=50  Identities=12%  Similarity=-0.014  Sum_probs=37.1

Q ss_pred             ccEEEeecCCCeEE-ecCceEEEec----CCeEEEEEEecCCCCC--CCceEEEeCC
Q psy3718           2 ENFFFYRGFNPRIL-LGRVLLPIGE----SSFHFDPELLNPSFNG--FPPLLLSSAP   51 (543)
Q Consensus         2 ~~~~~~~~~~~~~~-~~~g~L~I~~----D~G~Y~C~a~n~~g~~--~s~~l~v~~~   51 (543)
                      +.+.||+....... ..++.|.|.+    |+|.|+|.|.|..|..  ..+.|.|+.|
T Consensus        31 ~~~~W~k~g~~~~~~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~~P   87 (88)
T d2fcba2          31 VKVTFFQNGKSKKFSRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAP   87 (88)
T ss_dssp             EEEEEEETTEEEEEESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEECCC
T ss_pred             cEEEEEeecccccccccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEeCC
Confidence            36788885433222 3467899998    9999999999998875  3467888776

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.99  E-value=6.4e-06  Score=62.57  Aligned_cols=76  Identities=14%  Similarity=0.205  Sum_probs=52.9

Q ss_pred             EeecceeEeecCCCeEEEEEeeccCCceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEEEEeeec
Q psy3718          55 EIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTER  122 (543)
Q Consensus        55 ~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  122 (543)
                      +..|..+.+.+|++++|.|...+.-...+.|+|-  +...          ......++..+.    .+....|.|.++++
T Consensus         5 tQ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~----~~~~~~L~I~~~~~   80 (119)
T d1f3rb2           5 TQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG----SGTDYTLTISSLQP   80 (119)
T ss_dssp             CEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----EBTEEEEEECSCCG
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccC----CCCEEEEEcccCcc
Confidence            3457788899999999999987665567999973  2211          011123343321    23346899999999


Q ss_pred             CCCccEEEEEec
Q psy3718         123 GDSALFTCEIKS  134 (543)
Q Consensus       123 ~D~G~Y~C~a~n  134 (543)
                      +|+|.|-|.+..
T Consensus        81 ~DsavYyCa~~~   92 (119)
T d1f3rb2          81 EDVATYFCYQYN   92 (119)
T ss_dssp             GGCSEEEEEEES
T ss_pred             CCCeEEEeeccC
Confidence            999999997655

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.98  E-value=9e-06  Score=60.74  Aligned_cols=77  Identities=18%  Similarity=0.265  Sum_probs=52.1

Q ss_pred             eEEeecceeEeecCCCeEEEEEeeccCC---ceEEEcc--CCeec----------CCCCCCceEEeeeecCCCceeeEEE
Q psy3718          53 EFEIKLRNQTSRRGEPSVLQCEAKGEKP---IGILWNM--NNKRL----------DPKSDNRYTIREEILPNGVLSDLSI  117 (543)
Q Consensus        53 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~---~~i~W~~--~~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i  117 (543)
                      ++..+| .+.+.+|++++|.|..++...   -.+.|++  .|+.+          ......++....    .+....|.|
T Consensus         3 ~~tQ~~-slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~----~~~~~~L~I   77 (110)
T d1oaql_           3 VVTQES-ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL----IGNKAALTI   77 (110)
T ss_dssp             CEEECS-EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEE----ETTEEEEEE
T ss_pred             CEeeCC-CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecc----cccceeeec
Confidence            344444 678999999999999875432   3488996  23322          111234555442    234578999


Q ss_pred             EeeecCCCccEEEEEec
Q psy3718         118 KRTERGDSALFTCEIKS  134 (543)
Q Consensus       118 ~~~~~~D~G~Y~C~a~n  134 (543)
                      .+++++|+|.|-|.+..
T Consensus        78 ~~~~~~Dsa~YyCa~~~   94 (110)
T d1oaql_          78 TGAQTEDEAIYFCALWY   94 (110)
T ss_dssp             ESCCGGGCEEEEEEEEE
T ss_pred             CCCCccccEeEEEEccc
Confidence            99999999999998764

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.97  E-value=1.3e-05  Score=60.08  Aligned_cols=75  Identities=13%  Similarity=0.220  Sum_probs=50.2

Q ss_pred             cceeEeecCCCeEEEEEeecc-CCceEEEcc--CCeecCC------C--CCCceEEeeeecCCCceeeEEEEeeecCCCc
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGE-KPIGILWNM--NNKRLDP------K--SDNRYTIREEILPNGVLSDLSIKRTERGDSA  126 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~--~~~~i~~------~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G  126 (543)
                      |..+.+.+|++++|.|...+. ....+.|+|  .+..+..      .  ...+....  ...+....+|.|.+++++|+|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~L~I~~~~~~Dsa   82 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLI--ITEDRKSSTLILPHATLRDTA   82 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEE--ECTTCSEEEEEESSCCGGGCE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceee--ecccCCeeeehhcccccCCce
Confidence            556889999999999997654 346789997  2322110      0  01111111  223455678999999999999


Q ss_pred             cEEEEEec
Q psy3718         127 LFTCEIKS  134 (543)
Q Consensus       127 ~Y~C~a~n  134 (543)
                      .|.|.+..
T Consensus        83 ~YyCa~~~   90 (110)
T d2esvd1          83 VYYCIVVR   90 (110)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEeC
Confidence            99998754

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=2.6e-06  Score=64.81  Aligned_cols=34  Identities=9%  Similarity=-0.151  Sum_probs=29.7

Q ss_pred             eEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCCe
Q psy3718          20 LLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPPE   53 (543)
Q Consensus        20 ~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p~   53 (543)
                      .|.|.+    |+|.|+|.|.|..|.. .++.|.|..++.
T Consensus        69 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~  107 (113)
T d2dava1          69 EMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTG  107 (113)
T ss_dssp             EEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEECCCC
T ss_pred             EEEEccCCHHHCeEEEEEEEeCCCEEEEEEEEEEEcCCC
Confidence            699999    9999999999999986 678999976653

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.95  E-value=4e-05  Score=55.82  Aligned_cols=82  Identities=15%  Similarity=0.304  Sum_probs=52.7

Q ss_pred             CCCeEEeecceeEeecCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          50 APPEFEIKLRNQTSRRGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      .+|.+.+-+.. .+..|+..+|.|.+.|- |. ..|.|++||.++..... ....  ...++|.........+..+|...
T Consensus         4 ~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~-~~~~--~~~~dgtf~~~s~l~v~~~~~~~   79 (99)
T d1uvqa1           4 EVPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVS-ETSF--LSKSDHSFFKISYLTFLPSADEI   79 (99)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEE-ECCC--EECTTSCEEEEEEEEECCCTTCC
T ss_pred             cCCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcE-ecce--EECCCCCEEEEEEEEEcCCCCCE
Confidence            46766654322 24568899999999995 43 89999999998853210 1111  11234554444445566678889


Q ss_pred             EEEEEecc
Q psy3718         128 FTCEIKSQ  135 (543)
Q Consensus       128 Y~C~a~n~  135 (543)
                      |+|++...
T Consensus        80 ytC~V~H~   87 (99)
T d1uvqa1          80 YDCKVEHW   87 (99)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEeC
Confidence            99999875

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.95  E-value=5.8e-05  Score=54.01  Aligned_cols=78  Identities=22%  Similarity=0.393  Sum_probs=51.9

Q ss_pred             CCCeEEeecceeEeecCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          50 APPEFEIKLRNQTSRRGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      .||.+.+...   ...+..++|.|.+.|. |. ..|.|.+||..+...   .....  ...+|.........+..+|...
T Consensus         2 ~PP~V~v~~~---~~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~---~~~~~--~~~dgty~~~S~l~v~~~~~~~   73 (91)
T d3frua1           2 EPPSMRLKAR---PGNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSG---NCSTG--PNGDGSFHAWSLLEVKRGDEHH   73 (91)
T ss_dssp             BCCEEEEEEE---ECSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCC---EEEEE--ECSSSCEEEEEEEEEETTCGGG
T ss_pred             CCCEEEEEec---CCCCCCEEEEEEEEeEECCCCEEEEEECCEeCCcc---Cccce--ecCCCCEeEEEEEEECCCCCCE
Confidence            5777665311   1245689999999994 54 799999999987432   22222  1245555555555566788889


Q ss_pred             EEEEEecc
Q psy3718         128 FTCEIKSQ  135 (543)
Q Consensus       128 Y~C~a~n~  135 (543)
                      |+|.+...
T Consensus        74 ytC~V~H~   81 (91)
T d3frua1          74 YQCQVEHE   81 (91)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEeC
Confidence            99999875

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.95  E-value=1.3e-05  Score=60.23  Aligned_cols=76  Identities=12%  Similarity=0.219  Sum_probs=52.7

Q ss_pred             ecceeEeecCCCeEEEEEeeccCC--ceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEEEEeeec
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKGEKP--IGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTER  122 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  122 (543)
                      .|..+.+.+|++++|.|..++...  .-+.|+|-  ++.+          ......++....+  .......|.|.++++
T Consensus         6 QP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~l~~   83 (111)
T d1cd0a_           6 QPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSID--RSSNSASLTISGLKT   83 (111)
T ss_dssp             CCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE--TTTTEEEEEECSCCG
T ss_pred             cCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeec--CCCCccccccccCCc
Confidence            466788999999999999876543  45889863  2221          0111234444333  234567999999999


Q ss_pred             CCCccEEEEEec
Q psy3718         123 GDSALFTCEIKS  134 (543)
Q Consensus       123 ~D~G~Y~C~a~n  134 (543)
                      +|+|.|-|.+.+
T Consensus        84 ~Dsa~YyCA~~~   95 (111)
T d1cd0a_          84 EDEADYYCQSYD   95 (111)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccCcEEEEeecc
Confidence            999999998755

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.95  E-value=1.3e-05  Score=60.52  Aligned_cols=80  Identities=18%  Similarity=0.228  Sum_probs=52.1

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEccC--CeecCCC---CC-----CceEEeeeecCCCceeeEEEEeeecC
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRLDPK---SD-----NRYTIREEILPNGVLSDLSIKRTERG  123 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i~~~---~~-----~~~~~~~~~~~~~~~~~L~i~~~~~~  123 (543)
                      +...|..+.+.+|++++|.|...+. ...+.|+|-  +..+...   ..     .... ...........+|.|.+++++
T Consensus         4 V~Q~P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~L~I~~~~~~   81 (113)
T d1h5ba_           4 VEQSPSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLK-SAFDSERARYSTLHIRDAQLE   81 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEE-EECCSSSSSEEEEEECSCCGG
T ss_pred             eEECCCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccc-eEEeecCCceeEEEECCCCHh
Confidence            4556788899999999999998753 457899972  2211000   00     0000 111112334568999999999


Q ss_pred             CCccEEEEEecc
Q psy3718         124 DSALFTCEIKSQ  135 (543)
Q Consensus       124 D~G~Y~C~a~n~  135 (543)
                      |+|.|.|.+...
T Consensus        82 Dsa~YyCa~~~~   93 (113)
T d1h5ba_          82 DSGTYFCAAEAS   93 (113)
T ss_dssp             GCEEEEEEEECS
T ss_pred             HCEEEEEEecCC
Confidence            999999988754

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.94  E-value=1.7e-05  Score=59.44  Aligned_cols=77  Identities=18%  Similarity=0.266  Sum_probs=51.8

Q ss_pred             EEeecceeEeecCCCeEEEEEeecc----CCceEEEccC--Ceec----C------CCCCCceEEeeeecCCCceeeEEE
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGE----KPIGILWNMN--NKRL----D------PKSDNRYTIREEILPNGVLSDLSI  117 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~----p~~~i~W~~~--~~~i----~------~~~~~~~~~~~~~~~~~~~~~L~i  117 (543)
                      ++..|..+.+.+|++++|.|..++.    ....+.|++.  |...    .      .....++....    .+....|+|
T Consensus         4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~----~~~~~~L~I   79 (111)
T d2gsia1           4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSG----SGTDFTLNI   79 (111)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEE
T ss_pred             eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEec----CCCchhccc
Confidence            3456788899999999999987643    1235889873  3221    0      11123444332    233468999


Q ss_pred             EeeecCCCccEEEEEec
Q psy3718         118 KRTERGDSALFTCEIKS  134 (543)
Q Consensus       118 ~~~~~~D~G~Y~C~a~n  134 (543)
                      .+++++|+|.|-|.+..
T Consensus        80 ~~~~~~DsA~YyCa~~~   96 (111)
T d2gsia1          80 HPVEEEDAATYYCSHIR   96 (111)
T ss_dssp             SSCCGGGCEEEEEEECS
T ss_pred             ccccccCCceEEEEECC
Confidence            99999999999997654

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.93  E-value=1.6e-05  Score=59.62  Aligned_cols=78  Identities=15%  Similarity=0.316  Sum_probs=52.1

Q ss_pred             eEEeecceeEeecCCCeEEEEEeeccCCceEEEcc--CCeecC------CC-------CCCceEEeeeecCCCceeeEEE
Q psy3718          53 EFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNM--NNKRLD------PK-------SDNRYTIREEILPNGVLSDLSI  117 (543)
Q Consensus        53 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~~~i~------~~-------~~~~~~~~~~~~~~~~~~~L~i  117 (543)
                      .+...|..+.+.+|++++|.|..++ ....+.|+|  .|+...      ..       ...++....   .......|+|
T Consensus         3 ~V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I   78 (110)
T d2aq2a1           3 AVTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASR---PSQEQFSLIL   78 (110)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEE---EETTEEEEEE
T ss_pred             CEEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEe---ccCCEEEEEE
Confidence            3556788899999999999998765 346899997  232110      00       011222111   1223468999


Q ss_pred             EeeecCCCccEEEEEec
Q psy3718         118 KRTERGDSALFTCEIKS  134 (543)
Q Consensus       118 ~~~~~~D~G~Y~C~a~n  134 (543)
                      .++.++|+|.|.|.+..
T Consensus        79 ~~~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          79 ESATPSQTSVYFCASGG   95 (110)
T ss_dssp             SSCCGGGCEEEEEEEEE
T ss_pred             CCCCHhhCEEEEEeeCC
Confidence            99999999999998765

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=2e-06  Score=64.61  Aligned_cols=35  Identities=11%  Similarity=-0.022  Sum_probs=30.5

Q ss_pred             ceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCCe
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPPE   53 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p~   53 (543)
                      ..|.|.+    |+|.|+|+|.|..|.. ++..|.|..+|.
T Consensus        63 ~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v~v~~~P~  102 (107)
T d1he7a_          63 GCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPF  102 (107)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCCSCTT
T ss_pred             eEEEECcccHHHCcEEEEEEEeCCCEEEEEEEEEEEcCCC
Confidence            4699998    9999999999999986 567888888884

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=3.1e-06  Score=61.26  Aligned_cols=48  Identities=6%  Similarity=-0.184  Sum_probs=35.9

Q ss_pred             ccEEEeecCCC------eEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEEe
Q psy3718           2 ENFFFYRGFNP------RILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSS   49 (543)
Q Consensus         2 ~~~~~~~~~~~------~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~   49 (543)
                      ++++|++..+.      +....+++|.|.+    |+|.|+|.|.|..|.. .++.|.|.
T Consensus        31 p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V~   89 (90)
T d1vcaa2          31 PFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY   89 (90)
T ss_dssp             CEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEEE
Confidence            67899875432      2223456899999    9999999999999986 55677764

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.93  E-value=1.9e-05  Score=60.33  Aligned_cols=78  Identities=18%  Similarity=0.355  Sum_probs=53.3

Q ss_pred             EeecceeEeecCCCeEEEEEeeccC--CceEEEccC--CeecC------C---------CCCCceEEeeeecCCCceeeE
Q psy3718          55 EIKLRNQTSRRGEPSVLQCEAKGEK--PIGILWNMN--NKRLD------P---------KSDNRYTIREEILPNGVLSDL  115 (543)
Q Consensus        55 ~~~~~~~~v~~g~~~~l~C~~~g~p--~~~i~W~~~--~~~i~------~---------~~~~~~~~~~~~~~~~~~~~L  115 (543)
                      ..++..+.+.+|++++|.|.++|..  ...+.|+|-  ++.+.      .         ....++.+...  .......|
T Consensus         5 ~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~--~~~~~~~L   82 (123)
T d1hxmb1           5 EQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRI--PETSTSTL   82 (123)
T ss_dssp             ECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEE--TTTTEEEE
T ss_pred             ECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeee--ccccceee
Confidence            3444567888999999999998754  357889872  32211      0         01235655432  23445689


Q ss_pred             EEEeeecCCCccEEEEEec
Q psy3718         116 SIKRTERGDSALFTCEIKS  134 (543)
Q Consensus       116 ~i~~~~~~D~G~Y~C~a~n  134 (543)
                      .|.++.++|+|.|-|.+..
T Consensus        83 ~i~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          83 TIHNVEKQDIATYYCALWE  101 (123)
T ss_dssp             EECSCCGGGCEEEEEEEEE
T ss_pred             cccccccccCcEEEEeeeC
Confidence            9999999999999998754

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.3e-06  Score=62.83  Aligned_cols=36  Identities=8%  Similarity=-0.168  Sum_probs=30.9

Q ss_pred             ceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCCeE
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPPEF   54 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p~~   54 (543)
                      +.|.|.+    |+|.|+|.|.|..|.. .+..|.|..+|-+
T Consensus        62 ~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~P~i  102 (103)
T d1wwbx_          62 GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI  102 (103)
T ss_dssp             EEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCSCCCCC
T ss_pred             EEEEECCCCHHhCceEEEEEeccCCEEEEEEEEEEEeCCCC
Confidence            3799999    9999999999999997 5678888888753

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.1e-06  Score=62.61  Aligned_cols=49  Identities=16%  Similarity=0.019  Sum_probs=38.5

Q ss_pred             ccEEEeecCC---------CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEEeC
Q psy3718           2 ENFFFYRGFN---------PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSA   50 (543)
Q Consensus         2 ~~~~~~~~~~---------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~   50 (543)
                      ++++||+...         .++...+++|.|.+    |+|.|+|.|.|..|.. .++.|.|..
T Consensus        33 ~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L~V~~   95 (101)
T d1iray1          33 GTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVE   95 (101)
T ss_dssp             SEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEEEEEEEEEe
Confidence            4689998543         23455678999999    9999999999999886 567888843

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.92  E-value=1.9e-05  Score=59.36  Aligned_cols=76  Identities=18%  Similarity=0.392  Sum_probs=51.2

Q ss_pred             EeecceeEeecCCCeEEEEEeeccCCceEEEccC--CeecC--------------CCCCCceEEeeeecCCCceeeEEEE
Q psy3718          55 EIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRLD--------------PKSDNRYTIREEILPNGVLSDLSIK  118 (543)
Q Consensus        55 ~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i~--------------~~~~~~~~~~~~~~~~~~~~~L~i~  118 (543)
                      ...|..+.+.+|++++|.|...+. ...+.|||-  |+.+.              .....++....   .+.....|+|.
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~---~~~~~~~L~i~   78 (111)
T d2esve1           3 TQFPSHSVIEKGQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAER---TGGTYSTLKVQ   78 (111)
T ss_dssp             EEECSEEEEETTCCEEEEEECCTT-CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEEC---TTSSSEEEEES
T ss_pred             EECCCEEEECCCCCEEEEEEECCC-CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEc---CCCCEEEEEEC
Confidence            456788889999999999986543 357899962  32111              00122333221   23345689999


Q ss_pred             eeecCCCccEEEEEec
Q psy3718         119 RTERGDSALFTCEIKS  134 (543)
Q Consensus       119 ~~~~~D~G~Y~C~a~n  134 (543)
                      +++++|+|.|.|.+..
T Consensus        79 ~~~~~Dsa~YyCa~~~   94 (111)
T d2esve1          79 PAELEDSGVYFCASSQ   94 (111)
T ss_dssp             SCCGGGCEEEEEEEES
T ss_pred             CcccCCCceEEEeeeC
Confidence            9999999999998654

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.92  E-value=2.2e-05  Score=59.01  Aligned_cols=77  Identities=16%  Similarity=0.236  Sum_probs=52.6

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccC-----CceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEE
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEK-----PIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLS  116 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p-----~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~  116 (543)
                      ++..|..+.+.+|++++|.|..++..     ...+.|++-  |+..          ......++....    .+....|+
T Consensus         5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~----~~~~~~L~   80 (113)
T d1n4xl_           5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG----SGTDFTLK   80 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----CSSEEEEE
T ss_pred             EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeec----cCCcccCc
Confidence            45567888999999999999976532     257889862  3221          111223444321    34457899


Q ss_pred             EEeeecCCCccEEEEEec
Q psy3718         117 IKRTERGDSALFTCEIKS  134 (543)
Q Consensus       117 i~~~~~~D~G~Y~C~a~n  134 (543)
                      |.+++++|+|.|.|...+
T Consensus        81 I~~~~~~DsavYyCa~~~   98 (113)
T d1n4xl_          81 ISRVEAEDLGIYYCFQGS   98 (113)
T ss_dssp             ESSCCGGGCEEEEEEECS
T ss_pred             cCCCCcccCEEEEEEECC
Confidence            999999999999996554

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=2.4e-06  Score=61.55  Aligned_cols=51  Identities=10%  Similarity=-0.005  Sum_probs=37.7

Q ss_pred             cEEEeecCCCeEE-ecCceEEEec----CCeEEEEEEecCCCCC--CCceEEEeCCCe
Q psy3718           3 NFFFYRGFNPRIL-LGRVLLPIGE----SSFHFDPELLNPSFNG--FPPLLLSSAPPE   53 (543)
Q Consensus         3 ~~~~~~~~~~~~~-~~~g~L~I~~----D~G~Y~C~a~n~~g~~--~s~~l~v~~~p~   53 (543)
                      +++||+....... ..++.|.|.+    |+|.|.|.|.|..|..  ..+.|.|..+|+
T Consensus        32 ~~~w~k~g~~~~~~~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~~~Pr   89 (89)
T d1f2qa2          32 KVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR   89 (89)
T ss_dssp             EEEEEETTEECCSCCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             EEEEEEeeeccccccccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEEeCCC
Confidence            5788875432211 3457899999    9999999999988764  346899988884

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.90  E-value=8.3e-06  Score=61.75  Aligned_cols=78  Identities=18%  Similarity=0.236  Sum_probs=53.1

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEcc--CCeec------CCC----CCCceEEeeeecCCCceeeEEEEeee
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNM--NNKRL------DPK----SDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~~~i------~~~----~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      +...|..+.+.+|++++|.|..++. ...+.|||  .|..+      ...    ...++.+.  ........+|.|.+++
T Consensus         3 l~Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~I~~~~   79 (115)
T d1ogad1           3 LEQSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQ--FGDARKDSSLHITAAQ   79 (115)
T ss_dssp             CEEECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEE--ECTTSSEEEEEESSCC
T ss_pred             eEeCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccc--cccccceeeeeecCCC
Confidence            3456778889999999999998764 35789997  23211      000    01222222  1234556789999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      ++|+|.|.|.+..
T Consensus        80 ~~Dsa~YyCa~~~   92 (115)
T d1ogad1          80 PGDTGLYLCAGAG   92 (115)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ccceeeEcccccC
Confidence            9999999998765

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.90  E-value=2e-05  Score=59.51  Aligned_cols=77  Identities=22%  Similarity=0.353  Sum_probs=51.8

Q ss_pred             EeecceeEeecCCCeEEEEEeeccCCceEEEcc--CCeecCC-------------CCCCceEEeeeecCCCceeeEEEEe
Q psy3718          55 EIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNM--NNKRLDP-------------KSDNRYTIREEILPNGVLSDLSIKR  119 (543)
Q Consensus        55 ~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~~~i~~-------------~~~~~~~~~~~~~~~~~~~~L~i~~  119 (543)
                      +..|..+.+.+|++++|.|...+. ...+.|+|  .++....             ....++....   .+....+|+|.+
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~   78 (113)
T d2ntsp1           3 TQTPRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQ---FSNSRSEMNVST   78 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEE---CTTSCEEEEECS
T ss_pred             EeCCCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeecc---CcCCeeEEEECC
Confidence            345777889999999999997553 35789997  3332210             0112222211   233346899999


Q ss_pred             eecCCCccEEEEEecc
Q psy3718         120 TERGDSALFTCEIKSQ  135 (543)
Q Consensus       120 ~~~~D~G~Y~C~a~n~  135 (543)
                      ++++|+|.|.|.+...
T Consensus        79 ~~~~Dsa~YyCA~~~~   94 (113)
T d2ntsp1          79 LELGDSALYLCASSLA   94 (113)
T ss_dssp             CCGGGCEEEEEEEESS
T ss_pred             CCcccceeeeeeeeCC
Confidence            9999999999988753

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=6.3e-05  Score=54.40  Aligned_cols=71  Identities=15%  Similarity=0.179  Sum_probs=46.9

Q ss_pred             ecCCCeEEEEEeec-cCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecccce
Q psy3718          64 RRGEPSVLQCEAKG-EKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQKIS  138 (543)
Q Consensus        64 ~~g~~~~l~C~~~g-~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~s  138 (543)
                      ..|+.++|.|.+.| .|.++|.|++||..+....   ..... ...+|.........+...+...|+|.+......
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~---~~~~~-~~~~g~y~v~S~L~v~~~~~~~~tC~V~h~~l~   85 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAIN---TTVSQ-DPETELYAVSSKLDFNMTTNHSFMCLIKYGHLR   85 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSE---EEEEE-CTTTCCEEEEEEEEEETTSCEEEEEEEEETTCC
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecccc---eeeEe-cCCCccEEEEEEEEccCCccceEEEEEEecCCC
Confidence            35778899999998 6989999999999885321   11111 113344333333344566788999999886443

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=97.89  E-value=3.3e-06  Score=62.05  Aligned_cols=47  Identities=6%  Similarity=-0.169  Sum_probs=34.2

Q ss_pred             ccEEEeecCC---------Ce-EEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGFN---------PR-ILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~~---------~~-~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      |.++|++...         .+ .....++|.|.+    |+|.|+|.|.|..|.. .++.|.|
T Consensus        35 p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   96 (97)
T d3dara1          35 PTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   96 (97)
T ss_dssp             CEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence            5788987321         11 112346999999    9999999999999985 4567766

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=1.1e-05  Score=58.65  Aligned_cols=75  Identities=12%  Similarity=0.064  Sum_probs=54.4

Q ss_pred             CCCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718          50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFT  129 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~  129 (543)
                      .+|.+...|.. .|..|++++|.|.........+.|+|+|......    ..      ..+....+.|.+++.+|+|.|+
T Consensus         4 PkP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~----~~------~~~~~a~F~l~~v~~~~~G~Y~   72 (96)
T d1ucta2           4 GKPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ----HQ------SGEHPANFSLGPVDLNVSGIYR   72 (96)
T ss_dssp             CCCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS----EE------ECSSSEEEECCSCCGGGCEEEE
T ss_pred             CCCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceE----Ec------CCCcccEEEEeccccccCcEEE
Confidence            35777777754 6899999999998644444578899998654221    11      1123357999999999999999


Q ss_pred             EEEecc
Q psy3718         130 CEIKSQ  135 (543)
Q Consensus       130 C~a~n~  135 (543)
                      |.....
T Consensus        73 C~y~~~   78 (96)
T d1ucta2          73 CYGWYN   78 (96)
T ss_dssp             EEEECT
T ss_pred             EEEEcC
Confidence            988663

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.88  E-value=1.8e-05  Score=58.65  Aligned_cols=76  Identities=17%  Similarity=0.265  Sum_probs=51.0

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEEEEeee
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      ++..|..+.+.+|++++|.|..+.. ...+.|++-  +...          ......++....    .+...+|.|.+++
T Consensus         3 vtQsP~~l~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~----~~~~~~L~I~~~~   77 (104)
T d1yqvl1           3 LTQSPAIMSASPGEKVTMTCSASSS-VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSG----SGTSYSLTISSME   77 (104)
T ss_dssp             EEEESSEEEECTTCCEEEEEEESSC-CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCC-CCccEEEEeeccCceEEEEecccccCCCcCceEEEec----CCCEEEEEecccC
Confidence            4456888899999999999986543 346789963  2111          001122333221    2345689999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      ++|+|.|.|.+..
T Consensus        78 ~~Dsa~YyCa~~~   90 (104)
T d1yqvl1          78 TEDAATYYCQQWG   90 (104)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             cccCCeEEEEecC
Confidence            9999999997654

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.87  E-value=4e-06  Score=60.91  Aligned_cols=47  Identities=11%  Similarity=-0.116  Sum_probs=33.9

Q ss_pred             ccEEEeecCC--------CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718           2 ENFFFYRGFN--------PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~~--------~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      |.++|++...        .+....+++|.|.+    |+|.|+|.|.|..|.. ....|.|
T Consensus        31 p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~i~V   90 (92)
T d1epfa2          31 PTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV   90 (92)
T ss_dssp             CEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             CeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCCEEEEEEEEE
Confidence            5788987432        34446678999999    9999999999976654 3344444

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=3.3e-06  Score=63.16  Aligned_cols=75  Identities=15%  Similarity=0.166  Sum_probs=48.5

Q ss_pred             eeEeecCCCeEEEEEeeccCC----ceEEEccCCeecCCCCCCceEEee------eecCCCceeeEEEEeeecCCCccEE
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKP----IGILWNMNNKRLDPKSDNRYTIRE------EILPNGVLSDLSIKRTERGDSALFT  129 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~----~~i~W~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~L~i~~~~~~D~G~Y~  129 (543)
                      .+++..|++++|.|.......    ..+.|.+++..+.........+..      .....+ ..+|.|.+++.+|+|.|.
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g-~~sL~I~~v~~~D~G~Y~   81 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN-NLSIVILALRPSDEGTYE   81 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTT-TTEEEECSCCGGGCEEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCC-cEEEEECcCChHHCeEEE
Confidence            356789999999998764332    478898887654211111111110      111122 248999999999999999


Q ss_pred             EEEecc
Q psy3718         130 CEIKSQ  135 (543)
Q Consensus       130 C~a~n~  135 (543)
                      |.+.+.
T Consensus        82 C~V~~~   87 (105)
T d1dr9a1          82 CVVLKY   87 (105)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            998764

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=4.3e-06  Score=59.27  Aligned_cols=48  Identities=4%  Similarity=-0.255  Sum_probs=34.1

Q ss_pred             ccEEEeecCCCeEEecCceEEEec--CCeEEEEEEecCCCCC-CCceEEEeCC
Q psy3718           2 ENFFFYRGFNPRILLGRVLLPIGE--SSFHFDPELLNPSFNG-FPPLLLSSAP   51 (543)
Q Consensus         2 ~~~~~~~~~~~~~~~~~g~L~I~~--D~G~Y~C~a~n~~g~~-~s~~l~v~~~   51 (543)
                      |.+.|++.  +..+...+.+....  |+|.|+|+|.|.+|.. .++.|.|..|
T Consensus        34 P~v~W~k~--g~~~~~~~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~P   84 (84)
T d2oz4a3          34 PELKCLKD--GTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP   84 (84)
T ss_dssp             CEEEEEET--TTEECCTTSCEECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             cEEEEEEe--eccceeeeeeeccccCCCCEEEEEEEcCCCEEEEEEEEEEECC
Confidence            67889874  33445555444333  9999999999999986 4577887654

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=97.87  E-value=4.8e-06  Score=61.32  Aligned_cols=49  Identities=16%  Similarity=0.059  Sum_probs=36.2

Q ss_pred             ccEEEeecC------CCeEEe--cCc--eEEEec----CCeEEEEEEecCCCCC-CCceEEEeC
Q psy3718           2 ENFFFYRGF------NPRILL--GRV--LLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSA   50 (543)
Q Consensus         2 ~~~~~~~~~------~~~~~~--~~g--~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~   50 (543)
                      +.++|+++.      ++....  .+|  +|.|.+    |+|.|+|.|.|..|.. .++.|.|+.
T Consensus        34 p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          34 PECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA   97 (98)
T ss_dssp             CEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEEEEEEEEEE
Confidence            467888743      232322  233  799999    9999999999999986 568888864

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.86  E-value=7.5e-05  Score=54.65  Aligned_cols=69  Identities=14%  Similarity=0.292  Sum_probs=45.3

Q ss_pred             eecCCCeEEEEEeec-cCC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718          63 SRRGEPSVLQCEAKG-EKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        63 v~~g~~~~l~C~~~g-~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      +..|+..+|.|.+.| .|. ..|.|++||..+.......  ...  ..++....-....+.++|...|+|.+...
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~--~~~--~~dgty~~~S~L~v~~~~~~~ytC~V~H~   85 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTF--VSA--VDGLSFQAFSYLNFTPEPSDIFSCIVTHE   85 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEE--EEE--ETTTEEEEEEEEEECCCTTCCEEEEEEET
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEece--EEe--CCCCcEEEEEEEEEecCCCCEEEEEEEeC
Confidence            356889999999999 454 8999999999874322211  111  13443333333345667777899999885

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.86  E-value=2.9e-05  Score=58.44  Aligned_cols=76  Identities=24%  Similarity=0.523  Sum_probs=50.6

Q ss_pred             EeecceeEeecCCCeEEEEEeeccCCceEEEccC--Ceec--------------CCCCCCceEEeeeecCCCceeeEEEE
Q psy3718          55 EIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRL--------------DPKSDNRYTIREEILPNGVLSDLSIK  118 (543)
Q Consensus        55 ~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i--------------~~~~~~~~~~~~~~~~~~~~~~L~i~  118 (543)
                      +..|..+.+.+|++++|.|.... ....+.|+|-  ++.+              ......++....   .......|+|.
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~   78 (112)
T d1kgce1           3 SQSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAER---PEGSVSTLKIQ   78 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEEC---TTSSCEEEEES
T ss_pred             EECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeEC---CcCCEEEEEEC
Confidence            34577888899999999998654 3467899972  2211              001122332221   23334689999


Q ss_pred             eeecCCCccEEEEEec
Q psy3718         119 RTERGDSALFTCEIKS  134 (543)
Q Consensus       119 ~~~~~D~G~Y~C~a~n  134 (543)
                      +++++|+|.|.|.+..
T Consensus        79 ~~~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          79 RTQQEDSAVYLCASSL   94 (112)
T ss_dssp             SCCGGGCEEEEEEEES
T ss_pred             CCCcCCCEEEEEeeeC
Confidence            9999999999998754

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.85  E-value=2.5e-05  Score=58.69  Aligned_cols=75  Identities=16%  Similarity=0.294  Sum_probs=50.2

Q ss_pred             EeecceeEeecCCCeEEEEEeecc-----CCceEEEcc--CCeecC----------CCCCCceEEeeeecCCCceeeEEE
Q psy3718          55 EIKLRNQTSRRGEPSVLQCEAKGE-----KPIGILWNM--NNKRLD----------PKSDNRYTIREEILPNGVLSDLSI  117 (543)
Q Consensus        55 ~~~~~~~~v~~g~~~~l~C~~~g~-----p~~~i~W~~--~~~~i~----------~~~~~~~~~~~~~~~~~~~~~L~i  117 (543)
                      +..|..+.+.+|++++|.|..++.     ....+.|++  .|....          .....++...    ..+....|.|
T Consensus         5 TQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~----~s~~~~~L~I   80 (112)
T d1mjul1           5 TQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGS----GSGTAFTLRI   80 (112)
T ss_dssp             ECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE----ECSSEEEEEE
T ss_pred             EecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEee----cCCCEEEEEE
Confidence            344667888999999999997663     235788986  333211          1112233332    2344578999


Q ss_pred             EeeecCCCccEEEEEe
Q psy3718         118 KRTERGDSALFTCEIK  133 (543)
Q Consensus       118 ~~~~~~D~G~Y~C~a~  133 (543)
                      .+++++|+|.|-|...
T Consensus        81 s~~~~~DsAvYyCa~~   96 (112)
T d1mjul1          81 SRVEAEDVGVYYCLQH   96 (112)
T ss_dssp             SSCCGGGCEEEEEEEC
T ss_pred             CCccccCCceEEEEeC
Confidence            9999999999999543

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=1.3e-05  Score=60.53  Aligned_cols=75  Identities=16%  Similarity=0.252  Sum_probs=49.9

Q ss_pred             ceeEeecCCCeEEEEEeecc--CCceEEEccC--Cee---cCC----------CCCCceEEeeeecCCCceeeEEEEeee
Q psy3718          59 RNQTSRRGEPSVLQCEAKGE--KPIGILWNMN--NKR---LDP----------KSDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g~--p~~~i~W~~~--~~~---i~~----------~~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      +...+.+|++++|.|..++.  ....+.|+|.  +..   +..          ....++.+...  ......+|+|.+++
T Consensus         7 ~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~--~~~~~~~Lti~~l~   84 (113)
T d1smoa_           7 EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDY--HDHGLLRVRMVNLQ   84 (113)
T ss_dssp             EEEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEE--TTTTEEEEEECSCC
T ss_pred             CcEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEE--CCCCEEEEEEccCC
Confidence            34678899999999998643  3457889973  211   100          01124554432  23444689999999


Q ss_pred             cCCCccEEEEEecc
Q psy3718         122 RGDSALFTCEIKSQ  135 (543)
Q Consensus       122 ~~D~G~Y~C~a~n~  135 (543)
                      .+|+|.|.|.+...
T Consensus        85 ~~Dsg~Y~Cav~~~   98 (113)
T d1smoa_          85 VEDSGLYQCVIYQP   98 (113)
T ss_dssp             GGGCEEEEEEECCT
T ss_pred             cccCceEEEEEECC
Confidence            99999999987553

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.84  E-value=1.7e-05  Score=59.53  Aligned_cols=73  Identities=15%  Similarity=0.309  Sum_probs=50.2

Q ss_pred             cceeEeecCCCeEEEEEeeccC--CceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEEEEeeecC
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGEK--PIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTERG  123 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~p--~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  123 (543)
                      |..+.+.+|++++|.|..++..  ...+.|++-  +..+          ......++....    ++...+|.|.+++++
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~~~~~   82 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSK----SGTSATLGITGLQTG   82 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE----ETTEEEEEESSCCGG
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeC----CCCEeeeEEeeeccc
Confidence            4578899999999999986643  356899963  2211          111123444432    234578999999999


Q ss_pred             CCccEEEEEec
Q psy3718         124 DSALFTCEIKS  134 (543)
Q Consensus       124 D~G~Y~C~a~n  134 (543)
                      |+|.|-|.+..
T Consensus        83 Dsa~YyCA~~~   93 (111)
T d1rzfl1          83 DEADYYCGTWD   93 (111)
T ss_dssp             GCSEEEEEEEE
T ss_pred             cCcceEEeecC
Confidence            99999998754

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.83  E-value=1.4e-06  Score=63.62  Aligned_cols=73  Identities=19%  Similarity=0.344  Sum_probs=48.7

Q ss_pred             eeEeecCCCeEEEEEeeccCCceEEEcc--CCeecCC----------CCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKPIGILWNM--NNKRLDP----------KSDNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~~~i~~----------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      .+.|.+|++++|.|...+ ....+.|+|  .|+.+..          ....++.+...  ......+|.|.+++++|+|.
T Consensus         2 slsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~~~~~Dsa~   78 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLD--TSKKSSSLLITASRAADTAS   78 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCB--GGGTBCCBCCSSCCSTTCSC
T ss_pred             CceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeecc--CcceecccCcCCCCcccCEE
Confidence            456889999999998764 346899997  3332211          11233433211  12233579999999999999


Q ss_pred             EEEEEecc
Q psy3718         128 FTCEIKSQ  135 (543)
Q Consensus       128 Y~C~a~n~  135 (543)
                      |.|.+...
T Consensus        79 YyCA~~~~   86 (96)
T d1ymmd1          79 YFCATDTT   86 (96)
T ss_dssp             CEEEEEET
T ss_pred             EeEeEecC
Confidence            99988664

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.82  E-value=1.7e-05  Score=57.53  Aligned_cols=67  Identities=21%  Similarity=0.417  Sum_probs=46.2

Q ss_pred             CCCeEEEEEeeccCCceEEEccC--Ceec------CCC---CCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEec
Q psy3718          66 GEPSVLQCEAKGEKPIGILWNMN--NKRL------DPK---SDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKS  134 (543)
Q Consensus        66 g~~~~l~C~~~g~p~~~i~W~~~--~~~i------~~~---~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  134 (543)
                      |++++|.|.........+.|+|-  +...      ...   ...++.....  ......+|.|.+++++|+|.|.|.+..
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~--~~~~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLN--KASQYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEE--TTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEec--CCCCEEeEEeeccccCcCccceeeEec
Confidence            78999999988777788999972  2211      000   1123433322  334457899999999999999998765

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=4.5e-06  Score=63.04  Aligned_cols=33  Identities=12%  Similarity=-0.115  Sum_probs=28.8

Q ss_pred             ceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCC
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAP   51 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~   51 (543)
                      ..|.|.+    |+|.|+|.|+|..|.. +++.|.|+.+
T Consensus        72 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          72 FELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             EEEEEESCCTTCCEEEEEEEEETTEEEEEEEEEEEESC
T ss_pred             EEEEEeccCHHHCcEEEEEEEECCCeEEEEEEEEEEec
Confidence            3799999    9999999999999987 6789998754

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=97.82  E-value=8.4e-06  Score=58.57  Aligned_cols=49  Identities=12%  Similarity=-0.114  Sum_probs=35.7

Q ss_pred             ccEEEeecCCCeEE-ecCceEEEec----CCeEEEEEEecCCCCC--CCceEEEeC
Q psy3718           2 ENFFFYRGFNPRIL-LGRVLLPIGE----SSFHFDPELLNPSFNG--FPPLLLSSA   50 (543)
Q Consensus         2 ~~~~~~~~~~~~~~-~~~g~L~I~~----D~G~Y~C~a~n~~g~~--~s~~l~v~~   50 (543)
                      ++++||+....... ..++.|.|.+    |+|.|+|.|.|..|..  ..+.|.|+.
T Consensus        33 ~~~~W~kng~~~~~~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV~E   88 (89)
T d1fnla2          33 HKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ   88 (89)
T ss_dssp             EEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             cEEEEEEcccccceeccccccEECccceeccceEEEEEEeCCCCeEEeeEEEEEEe
Confidence            36789885433222 3467999998    9999999999998864  346777754

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.82  E-value=2.8e-05  Score=58.23  Aligned_cols=77  Identities=18%  Similarity=0.327  Sum_probs=51.1

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccC-----CceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEE
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEK-----PIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLS  116 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p-----~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~  116 (543)
                      ++..|..+.+.+|++++|.|.+++..     ...+.|++.  |..+          ......++....    .+....|.
T Consensus         4 lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~----~~~~~~L~   79 (112)
T d1ncwl1           4 MTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSG----SGTDFTLK   79 (112)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE----ETTEEEEE
T ss_pred             EeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeC----CCCEEEEE
Confidence            34557788899999999999875432     246889853  3221          111123443321    23346899


Q ss_pred             EEeeecCCCccEEEEEec
Q psy3718         117 IKRTERGDSALFTCEIKS  134 (543)
Q Consensus       117 i~~~~~~D~G~Y~C~a~n  134 (543)
                      |.+++++|+|.|-|...+
T Consensus        80 I~~~~~eDsAvYYC~~~~   97 (112)
T d1ncwl1          80 ISRVEAEDLGVYYCWQGT   97 (112)
T ss_dssp             ESSCCGGGCEEEEEEECS
T ss_pred             ECccccCcCEeEEEEcCC
Confidence            999999999999996544

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.82  E-value=2.8e-05  Score=58.51  Aligned_cols=74  Identities=15%  Similarity=0.241  Sum_probs=51.0

Q ss_pred             cceeEeecCCCeEEEEEeeccC---CceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEEEEeeec
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGEK---PIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTER  122 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~p---~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  122 (543)
                      |..+.+.+|++++|.|...+..   ...+.|+|-  +..+          ......++....    ......|.|.++++
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~l~~   82 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSK----SGNSASLTISGLQA   82 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE----ETTEEEEEECSCCG
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEEC----CCCEeeEEeCcCcc
Confidence            6778899999999999987642   246899962  2211          111123443332    23357899999999


Q ss_pred             CCCccEEEEEecc
Q psy3718         123 GDSALFTCEIKSQ  135 (543)
Q Consensus       123 ~D~G~Y~C~a~n~  135 (543)
                      +|+|.|-|.+.+.
T Consensus        83 ~Dsa~YyCa~~~~   95 (112)
T d1lgva1          83 EDEADYYCSSYDG   95 (112)
T ss_dssp             GGCEEEEEEEECS
T ss_pred             ccCEEEEEeeecC
Confidence            9999999988653

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.81  E-value=3e-05  Score=58.32  Aligned_cols=77  Identities=16%  Similarity=0.295  Sum_probs=52.1

Q ss_pred             EEeecceeEeecCCCeEEEEEeecc------CCceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeE
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGE------KPIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDL  115 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~------p~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L  115 (543)
                      ++..|..+.+.+|++++|.|..++.      ....+.|+|.  |+.+          ......++..+.    +.....|
T Consensus         4 ~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~----s~~~~~L   79 (113)
T d1q9ra1           4 MSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSG----SGTDFTL   79 (113)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE----ETTEEEE
T ss_pred             EEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeC----CCCeEeE
Confidence            4456788889999999999987642      1245899973  3211          111233444432    2344689


Q ss_pred             EEEeeecCCCccEEEEEec
Q psy3718         116 SIKRTERGDSALFTCEIKS  134 (543)
Q Consensus       116 ~i~~~~~~D~G~Y~C~a~n  134 (543)
                      .|.+++++|+|.|-|.+..
T Consensus        80 ~I~~l~~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          80 TITSVQAEDLAVYYCKQSY   98 (113)
T ss_dssp             EESSCCGGGCEEEEEEECS
T ss_pred             EecccccCCCeEEEecccC
Confidence            9999999999999997654

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.81  E-value=6.2e-06  Score=60.18  Aligned_cols=46  Identities=9%  Similarity=-0.055  Sum_probs=32.4

Q ss_pred             cEEEeecCC-------CeEE-ecCceEEEec----CCeEEEEEEecCCCCCCCceEEE
Q psy3718           3 NFFFYRGFN-------PRIL-LGRVLLPIGE----SSFHFDPELLNPSFNGFPPLLLS   48 (543)
Q Consensus         3 ~~~~~~~~~-------~~~~-~~~g~L~I~~----D~G~Y~C~a~n~~g~~~s~~l~v   48 (543)
                      .+.|++...       .+.. ..+++|.|.+    |+|.|+|+|.|..|...+..+.|
T Consensus        34 ~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~s~~v~l   91 (94)
T d1biha1          34 KYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISF   91 (94)
T ss_dssp             EEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred             EEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCCCEEEEEEEEE
Confidence            477887322       2222 4468999999    99999999999999764433333

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.80  E-value=2.5e-05  Score=59.33  Aligned_cols=78  Identities=22%  Similarity=0.324  Sum_probs=51.0

Q ss_pred             EeecceeEeecCCCeEEEEEeeccC--CceEEEccC--Ceec------CCC--------CCCceEEeeeecCCCceeeEE
Q psy3718          55 EIKLRNQTSRRGEPSVLQCEAKGEK--PIGILWNMN--NKRL------DPK--------SDNRYTIREEILPNGVLSDLS  116 (543)
Q Consensus        55 ~~~~~~~~v~~g~~~~l~C~~~g~p--~~~i~W~~~--~~~i------~~~--------~~~~~~~~~~~~~~~~~~~L~  116 (543)
                      ..+|..+.+.+|++++|.|.+.+..  ...+.|+|-  |+.+      ...        ...++.+...  .......|+
T Consensus         5 ~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~--~~~~~~~L~   82 (120)
T d1ypzf1           5 EQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKN--PSASTSILT   82 (120)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEEC--CTTTEEEEE
T ss_pred             EcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccc--ccccccccc
Confidence            3445567788999999999987653  356899972  3211      000        1123333211  234456799


Q ss_pred             EEeeecCCCccEEEEEec
Q psy3718         117 IKRTERGDSALFTCEIKS  134 (543)
Q Consensus       117 i~~~~~~D~G~Y~C~a~n  134 (543)
                      |.+++++|+|.|.|.+..
T Consensus        83 I~~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          83 IYSLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             ECSCCGGGCSEEEEEECC
T ss_pred             ccccccccceeEEEEEcC
Confidence            999999999999997654

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=2.5e-06  Score=63.83  Aligned_cols=34  Identities=12%  Similarity=-0.128  Sum_probs=29.3

Q ss_pred             ceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCC
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPP   52 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p   52 (543)
                      +.|.|.+    |+|.|+|+|.|..|.. .++.|.|..+|
T Consensus        62 ~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~P  100 (105)
T d1wwca_          62 GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEP  100 (105)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCSCCC
T ss_pred             EEEEEeecccccceEEEEEEEcCCCEEEEEEEEEEEeCC
Confidence            4699998    9999999999999986 56788887776

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.79  E-value=7.8e-06  Score=59.99  Aligned_cols=47  Identities=9%  Similarity=-0.026  Sum_probs=33.2

Q ss_pred             ccEEEeecCCC-------eEE-e----cCceEEEec----CCeEEEEEEecCCCCCC--CceEEE
Q psy3718           2 ENFFFYRGFNP-------RIL-L----GRVLLPIGE----SSFHFDPELLNPSFNGF--PPLLLS   48 (543)
Q Consensus         2 ~~~~~~~~~~~-------~~~-~----~~g~L~I~~----D~G~Y~C~a~n~~g~~~--s~~l~v   48 (543)
                      ++++|++.++.       ++. .    .+++|.|.+    |+|.|+|.|.|..|...  ++.|.|
T Consensus        31 ~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~tv~l~V   95 (97)
T d1epfa1          31 KDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI   95 (97)
T ss_dssp             CEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEE
T ss_pred             CEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEEEEEEEEE
Confidence            57899875432       222 1    124799999    99999999999999753  356655

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.79  E-value=1.3e-05  Score=59.67  Aligned_cols=74  Identities=18%  Similarity=0.380  Sum_probs=50.7

Q ss_pred             ecceeEeecCCCeEEEEEeeccCCceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEEEEeeecCC
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTERGD  124 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D  124 (543)
                      .|..+.+.+|++++|.|.........+.|+|-  ++.+          ......++....    .+....|.|.+++++|
T Consensus         6 Qp~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~l~~~D   81 (109)
T d1w72l1           6 QPPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSN----SGNMATLTISRVEAGD   81 (109)
T ss_dssp             CCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE----ETTEEEEEESSCCGGG
T ss_pred             eCCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeec----CCCccceEEeeeccCC
Confidence            34468889999999999976655567899963  3221          011123333322    2345689999999999


Q ss_pred             CccEEEEEec
Q psy3718         125 SALFTCEIKS  134 (543)
Q Consensus       125 ~G~Y~C~a~n  134 (543)
                      +|.|-|.+..
T Consensus        82 savYyCA~~~   91 (109)
T d1w72l1          82 EADYYCQVWD   91 (109)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEecC
Confidence            9999998764

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=8.5e-05  Score=49.84  Aligned_cols=87  Identities=14%  Similarity=0.142  Sum_probs=57.3

Q ss_pred             ceeEeecCCCeEEEEEeec-cCCceEEEcc-CCeecCCCC-CCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718          59 RNQTSRRGEPSVLQCEAKG-EKPIGILWNM-NNKRLDPKS-DNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g-~p~~~i~W~~-~~~~i~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      +...+..|+.+.|.|.+.- ..+|.++|-| +|..-.+.. ..+.........+-....|.+..+.++|.|.|+|.|.-.
T Consensus        11 S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~   90 (104)
T d1xaua_          11 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN   90 (104)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             ceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCC
Confidence            3467899999999999976 4569999976 554321112 111111112123344567999999999999999999886


Q ss_pred             cceeeeeeee
Q psy3718         136 KISSQQMTYE  145 (543)
Q Consensus       136 ~~sv~~~~~~  145 (543)
                      .+-+++-+.+
T Consensus        91 s~vieSHSvt  100 (104)
T d1xaua_          91 SQVINSHSVT  100 (104)
T ss_dssp             TEEEECCCEE
T ss_pred             hhheecceEE
Confidence            6655444433

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=9.8e-05  Score=53.34  Aligned_cols=80  Identities=14%  Similarity=0.349  Sum_probs=50.5

Q ss_pred             CCCeEEeecceeEeecCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          50 APPEFEIKLRNQTSRRGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      .||.+.+...   ...++.++|.|.+.|. |. +.|.|++||..+.....   .......+++.........+...+...
T Consensus         2 ~PP~v~v~~~---~~~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~---~~~~~~~~~~~~~~~s~l~v~~~~~~~   75 (95)
T d1k5na1           2 DPPKTHVTHH---PISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTE---LVETRPAGDRTFQKWAAVVVPSGEEQR   75 (95)
T ss_dssp             BCCEEEEEEE---EEETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCE---ECCCEECSSSCEEEEEEEEEETTCGGG
T ss_pred             cCCccEEEec---cCCCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCce---eccEEcCCCCeEEEEEEEEEEcCCCCE
Confidence            4676655321   1235689999999995 43 79999999998753221   111111234444444455566777789


Q ss_pred             EEEEEecc
Q psy3718         128 FTCEIKSQ  135 (543)
Q Consensus       128 Y~C~a~n~  135 (543)
                      |+|.+...
T Consensus        76 ytC~V~H~   83 (95)
T d1k5na1          76 YTCHVQHE   83 (95)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEEC
Confidence            99999885

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.78  E-value=6.4e-05  Score=54.40  Aligned_cols=67  Identities=13%  Similarity=0.169  Sum_probs=45.3

Q ss_pred             cCCCeEEEEEeec-cCC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718          65 RGEPSVLQCEAKG-EKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        65 ~g~~~~l~C~~~g-~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      .++.++|.|.+.| .|. .+|.|++|+..+.........    .-.+|.........+..+|...|+|.+...
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~----~~~dgty~~~S~L~v~~~~~~~ytC~V~H~   83 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDIL----PNANWTWYLRATLDVADGEAAGLSCRVKHS   83 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCE----ECTTSCEEEEEEEEEEGGGCTTEEEEEEEG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccE----eCCCCcEEEEEEEEEeCccCCEEEEEEEeC
Confidence            4568999999999 464 699999999877432211111    124555444444555677888999999885

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.78  E-value=7.9e-05  Score=54.04  Aligned_cols=81  Identities=12%  Similarity=0.184  Sum_probs=48.0

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeecc-C-CceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccE
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKGE-K-PIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALF  128 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p-~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y  128 (543)
                      +|.+.+.|... ...|+.++|.|.+.|. | ...|.|.+||.++....   ........++|..+......+...+...|
T Consensus         2 ~P~V~v~p~~~-~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~---~~~~~~~~~dgty~~~s~l~v~~~~~~~y   77 (97)
T d1uvqb1           2 EPTVTISPSRT-EALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGV---VSTPLIRNGDWTFQILVMLEMTPQRGDVY   77 (97)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEEECTTE---EECCCEECSSSCEEEEEEEECCSCTTCCE
T ss_pred             CCEEEEecCCc-ccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCc---EeceeecCCCceEEEEEEeccCCCCCCEE
Confidence            46655543332 2347788999999984 4 38999999998875321   11111112345555555556677888899


Q ss_pred             EEEEecc
Q psy3718         129 TCEIKSQ  135 (543)
Q Consensus       129 ~C~a~n~  135 (543)
                      +|.+...
T Consensus        78 tC~V~H~   84 (97)
T d1uvqb1          78 TCHVEHP   84 (97)
T ss_dssp             EEEEECT
T ss_pred             EEEEEeC
Confidence            9999885

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=2.4e-05  Score=59.63  Aligned_cols=77  Identities=14%  Similarity=0.248  Sum_probs=50.6

Q ss_pred             ecceeEeecCCCeEEEEEeecc---C---CceEEEccCCee-------------cCCCCCCceEEeeeecCCCceeeEEE
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKGE---K---PIGILWNMNNKR-------------LDPKSDNRYTIREEILPNGVLSDLSI  117 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g~---p---~~~i~W~~~~~~-------------i~~~~~~~~~~~~~~~~~~~~~~L~i  117 (543)
                      .|+.+.+.+|+.++|.|.....   +   ...+.|++....             .......++.+....  .....+|.|
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~sL~I   83 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNM--DHKVCNLLL   83 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCG--GGTBCCEEE
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeC--cCCEEEEEE
Confidence            3677889999999999997631   1   235667764221             111123445443321  123457999


Q ss_pred             EeeecCCCccEEEEEecc
Q psy3718         118 KRTERGDSALFTCEIKSQ  135 (543)
Q Consensus       118 ~~~~~~D~G~Y~C~a~n~  135 (543)
                      .+++.+|+|.|.|.+...
T Consensus        84 ~~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          84 KDLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             CSCCGGGCEEEEEEEECC
T ss_pred             CCCChhHCEEEEEEEEeC
Confidence            999999999999999764

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=6.8e-06  Score=60.76  Aligned_cols=39  Identities=8%  Similarity=-0.033  Sum_probs=32.1

Q ss_pred             ccEEEeec------CCCeEEecCceEEEec----CCeEEEEEEecCCCC
Q psy3718           2 ENFFFYRG------FNPRILLGRVLLPIGE----SSFHFDPELLNPSFN   40 (543)
Q Consensus         2 ~~~~~~~~------~~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~   40 (543)
                      |.++|+++      ++.++...++.|.|.+    |+|.|+|.|.|..|.
T Consensus        35 P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2          35 PKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLG   83 (103)
T ss_dssp             CCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             CEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCC
Confidence            67889873      3456667789999999    999999999998764

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=9.1e-06  Score=60.67  Aligned_cols=36  Identities=6%  Similarity=-0.129  Sum_probs=28.5

Q ss_pred             eEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718          13 RILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus        13 ~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      +..+.+++|.|.+    |+|.|+|.|.|..|.. ..+.|.|
T Consensus        62 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~G~~~~~~~v~v  102 (105)
T d1nbqa1          62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL  102 (105)
T ss_dssp             TCEEETTEEECSCCCTTSCSEEEEEEEETTSSCEECCEEEC
T ss_pred             eeeecCceEEEecccccceeeEEEEEEECCCCEEEEEEEEE
Confidence            3344567899999    9999999999999987 4556554

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.76  E-value=1.7e-05  Score=59.04  Aligned_cols=74  Identities=16%  Similarity=0.274  Sum_probs=50.7

Q ss_pred             ecceeEeecCCCeEEEEEeeccCCceEEEcc--CCeec----------CCCCCCceEEeeeecCCCceeeEEEEeeecCC
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKGEKPIGILWNM--NNKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTERGD  124 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D  124 (543)
                      .|..+.+.+|++++|.|.........+.|+|  .|+.+          ...-..++.+...    +....|.|.+++++|
T Consensus         5 QP~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~----~~~~~L~I~~l~~~D   80 (108)
T d1nfde1           5 QPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTS----GTTATLTISGAQPED   80 (108)
T ss_dssp             CCSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEE----TTEEEEEETTCCGGG
T ss_pred             CCCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCC----CCEeeeeEcCccccC
Confidence            3667888999999999987655445788986  23211          0011234554322    234689999999999


Q ss_pred             CccEEEEEec
Q psy3718         125 SALFTCEIKS  134 (543)
Q Consensus       125 ~G~Y~C~a~n  134 (543)
                      +|.|.|.+..
T Consensus        81 sa~YyCA~~~   90 (108)
T d1nfde1          81 EAAYYCLSSY   90 (108)
T ss_dssp             CSEEEEEEEE
T ss_pred             CceEEEEeec
Confidence            9999998754

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.75  E-value=0.0001  Score=53.14  Aligned_cols=80  Identities=19%  Similarity=0.326  Sum_probs=49.9

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccE
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALF  128 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y  128 (543)
                      ||.+.+....   ..+..++|.|.+.|. |. ..|.|.+||..+.........+..  -.++.........+..+|...|
T Consensus         3 pP~V~v~~~~---~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~--~~~~ty~~~s~l~v~~~~~~~y   77 (94)
T d1hyrc1           3 PPMVNVTRSE---ASEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLP--DGNGTYQTWVATRICQGEEQRF   77 (94)
T ss_dssp             CCEEEEEECC---CSSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEE--CSSSCEEEEEEEEEETTCGGGE
T ss_pred             CCEEEEEecC---CCCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEE--CCCCcEEEEEEEEEcCCCCCEE
Confidence            5665543211   235678999999994 54 799999999988543221111111  1234444444455667777899


Q ss_pred             EEEEecc
Q psy3718         129 TCEIKSQ  135 (543)
Q Consensus       129 ~C~a~n~  135 (543)
                      +|.+...
T Consensus        78 tC~V~H~   84 (94)
T d1hyrc1          78 TCYMEHS   84 (94)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999874

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=2.7e-05  Score=59.71  Aligned_cols=76  Identities=13%  Similarity=0.250  Sum_probs=49.5

Q ss_pred             cceeEeecCCCeEEEEEeecc-------CCceEEEccCCeecC---------------CCCCCceEEeeeecCCCceeeE
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGE-------KPIGILWNMNNKRLD---------------PKSDNRYTIREEILPNGVLSDL  115 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~-------p~~~i~W~~~~~~i~---------------~~~~~~~~~~~~~~~~~~~~~L  115 (543)
                      |..+++.+|+.++|.|.....       ....+.|++....-.               .....|+.+....  .....+|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL   85 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDP--QTKNCTL   85 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCG--GGTBCCE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeC--cCCEEEE
Confidence            566889999999999998522       124688987532110               0012344443221  1234689


Q ss_pred             EEEeeecCCCccEEEEEecc
Q psy3718         116 SIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus       116 ~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      .|.+++.+|+|.|.|.+...
T Consensus        86 ~I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          86 SIRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             EECSCCGGGCEEEEEEEEET
T ss_pred             EECCCChHHCEEEEEEEEeC
Confidence            99999999999999998654

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=1.2e-05  Score=58.10  Aligned_cols=40  Identities=20%  Similarity=-0.017  Sum_probs=30.7

Q ss_pred             ccEEEeecC-------CCeEEecCceEEEec----CCeEEEEEEecCCCCC
Q psy3718           2 ENFFFYRGF-------NPRILLGRVLLPIGE----SSFHFDPELLNPSFNG   41 (543)
Q Consensus         2 ~~~~~~~~~-------~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~   41 (543)
                      +.+.|++..       ..+.+..+|+|.|.+    |+|.|+|+|.|..|..
T Consensus        26 ~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~   76 (92)
T d1olza1          26 ARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNK   76 (92)
T ss_dssp             CEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSS
T ss_pred             CceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCE
Confidence            456776522       244556788999999    9999999999988865

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=0.00013  Score=51.84  Aligned_cols=80  Identities=20%  Similarity=0.355  Sum_probs=48.5

Q ss_pred             CCCeEEeecceeEeecCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCcc
Q psy3718          50 APPEFEIKLRNQTSRRGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSAL  127 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~  127 (543)
                      .||.+.+..   ....++.++|.|.+.|. |. +.|.|++||+.+....   ........++|.........+...|...
T Consensus         2 ~pP~v~v~~---~~~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~---~~~~~~~~~~gt~~~~s~l~v~~~~~~~   75 (89)
T d2mhaa1           2 DSPKAHVTH---HSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDM---ELVETRPAGDGTFQKWASVVVPLGKEQY   75 (89)
T ss_dssp             BCCEEEECC---EESCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTC---EECCCEECSSSCEEEEEEEEEESSTTTT
T ss_pred             CCCEeEEEc---cCCCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCE---EECcEecCCCCcEEEEEEEEecCcCCCE
Confidence            456655421   12346789999999995 43 7899999999885321   1111111234433333334455677779


Q ss_pred             EEEEEecc
Q psy3718         128 FTCEIKSQ  135 (543)
Q Consensus       128 Y~C~a~n~  135 (543)
                      |+|.+...
T Consensus        76 ytC~V~H~   83 (89)
T d2mhaa1          76 YTCHVYHQ   83 (89)
T ss_dssp             CEEEEECS
T ss_pred             EEEEEEEC
Confidence            99999874

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.70  E-value=2.2e-05  Score=58.97  Aligned_cols=73  Identities=16%  Similarity=0.369  Sum_probs=50.1

Q ss_pred             cceeEeecCCCeEEEEEeeccC--CceEEEccC--Ceec----------CCCCCCceEEeeeecCCCceeeEEEEeeecC
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGEK--PIGILWNMN--NKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTERG  123 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~p--~~~i~W~~~--~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  123 (543)
                      |..+.+.+|++++|.|.+.+..  ...+.|++-  +...          ......++....    ++....|.|.+++.+
T Consensus         7 ~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~v~~~   82 (114)
T d2rhea_           7 PPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASK----SGTSASLAISGLESE   82 (114)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEE----ETTEEEEEESSCCGG
T ss_pred             CCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecC----CCCeeeeEecccCcc
Confidence            3468889999999999987653  467899963  2211          111123444332    233468999999999


Q ss_pred             CCccEEEEEec
Q psy3718         124 DSALFTCEIKS  134 (543)
Q Consensus       124 D~G~Y~C~a~n  134 (543)
                      |++.|-|.+..
T Consensus        83 DsA~YyCA~~~   93 (114)
T d2rhea_          83 DEADYYCAAWN   93 (114)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCceEEEeecC
Confidence            99999998754

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.70  E-value=1e-05  Score=58.82  Aligned_cols=37  Identities=16%  Similarity=0.293  Sum_probs=32.6

Q ss_pred             CceEEEecceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718         505 PARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKT  541 (543)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~  541 (543)
                      +++|......+.+..|++++|.|.+.|.|.|+++|+|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~   38 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTV   38 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEEC
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEe
Confidence            4556556678999999999999999999999999987

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.69  E-value=5.6e-05  Score=56.91  Aligned_cols=77  Identities=16%  Similarity=0.267  Sum_probs=50.3

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEcc--CCeecCC------C-------CCCceEEeeeecCCCceeeEEEE
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNM--NNKRLDP------K-------SDNRYTIREEILPNGVLSDLSIK  118 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~~~i~~------~-------~~~~~~~~~~~~~~~~~~~L~i~  118 (543)
                      +...|..+.+.+|++++|.|.... ....+.|+|  .|..+..      .       ...++...   ..+.....|+|.
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~   78 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVS---REKKERFSLILE   78 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEE---CSSTTBCEEEES
T ss_pred             EEccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEE---eccCcEeeeEec
Confidence            445577788899999999998643 346788997  2321100      0       01122221   123344689999


Q ss_pred             eeecCCCccEEEEEec
Q psy3718         119 RTERGDSALFTCEIKS  134 (543)
Q Consensus       119 ~~~~~D~G~Y~C~a~n  134 (543)
                      +++++|+|.|.|.+..
T Consensus        79 ~~~~~Dsa~YyCa~~~   94 (113)
T d1j8he1          79 SASTNQTSMYLCASSS   94 (113)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             cCccCCcccEEeeEcc
Confidence            9999999999998865

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=0.0001  Score=55.03  Aligned_cols=79  Identities=11%  Similarity=0.150  Sum_probs=47.9

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeec-cCC--ceEEEccCCeecCCCCCCceEEeeeecCCC---ceeeEEEEeeecCC
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKG-EKP--IGILWNMNNKRLDPKSDNRYTIREEILPNG---VLSDLSIKRTERGD  124 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p~--~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~D  124 (543)
                      .|.|....   .+.+|+.++|.|.+.+ .|.  ++|.|++++..+.......     .....+   ..+.|++. ...+|
T Consensus         4 ~P~I~~~~---~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~-----~~~~~~~~~~~s~l~~~-~~~~D   74 (109)
T d1vcaa1           4 DPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLE-----DADRKSLETKSLEVTFT-PVIED   74 (109)
T ss_dssp             CCEEEESS---CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCS-----CCSSCCCEEEEEEEEEC-CCGGG
T ss_pred             CCEEecCC---CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeecccccc-----ccccCCcceeeEEEEcc-CChHH
Confidence            35554432   3679999999999987 564  4799999998764211100     000111   12345555 44455


Q ss_pred             Cc-cEEEEEecccce
Q psy3718         125 SA-LFTCEIKSQKIS  138 (543)
Q Consensus       125 ~G-~Y~C~a~n~~~s  138 (543)
                      .| .|+|.|++..+.
T Consensus        75 ~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          75 IGKVLVCRAKLHIDE   89 (109)
T ss_dssp             TTCEEEEEEEECSCC
T ss_pred             CCcEEEEEEEcCcCC
Confidence            55 799999987544

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=2.2e-05  Score=59.08  Aligned_cols=73  Identities=15%  Similarity=0.245  Sum_probs=43.6

Q ss_pred             eeEeecCCCeEEEEEeeccCC---c--eEEEccCCeec----------CCCCCCceEEeeeecCCCceeeEEEEeeecCC
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKP---I--GILWNMNNKRL----------DPKSDNRYTIREEILPNGVLSDLSIKRTERGD  124 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~---~--~i~W~~~~~~i----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D  124 (543)
                      .+.+..|++++|.|.....+.   .  .+.|.+++..+          ....+.++..+....  ....+|.|.+++.+|
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~--~~~~sL~I~~v~~~D   80 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFD--SDSWTLRLHNLQIKD   80 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEE--TTTTEEEECSCCGGG
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEecc--CCeEEEEECCCChhH
Confidence            356788999999999864332   2  34555543321          000111222111111  112479999999999


Q ss_pred             CccEEEEEec
Q psy3718         125 SALFTCEIKS  134 (543)
Q Consensus       125 ~G~Y~C~a~n  134 (543)
                      +|.|.|.+..
T Consensus        81 ~G~Y~C~V~~   90 (110)
T d1ncna_          81 KGLYQCIIHH   90 (110)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEEe
Confidence            9999999865

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=2e-05  Score=58.38  Aligned_cols=37  Identities=3%  Similarity=-0.094  Sum_probs=28.3

Q ss_pred             CeEEecCceEEEec----CCeEEEEEEecCCCCC-CCceEEE
Q psy3718          12 PRILLGRVLLPIGE----SSFHFDPELLNPSFNG-FPPLLLS   48 (543)
Q Consensus        12 ~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v   48 (543)
                      .+..+.+++|.|.+    |+|.|+|.|.|..|.. ..+.|.|
T Consensus        58 ~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v   99 (102)
T d1f97a1          58 DRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL   99 (102)
T ss_dssp             TTEEEETTEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEE
T ss_pred             eEEEecCCEEEEeECCccCCEEEEEEEEECCCCEEEEEEEEE
Confidence            34445567899999    9999999999999986 4444443

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.66  E-value=7.3e-05  Score=56.12  Aligned_cols=76  Identities=14%  Similarity=0.201  Sum_probs=49.8

Q ss_pred             EeecceeEeecCCCeEEEEEeeccCCceEEEcc--CCeecCCC-------------CCCceEEeeeecCCCceeeEEEEe
Q psy3718          55 EIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNM--NNKRLDPK-------------SDNRYTIREEILPNGVLSDLSIKR  119 (543)
Q Consensus        55 ~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~~~i~~~-------------~~~~~~~~~~~~~~~~~~~L~i~~  119 (543)
                      +..|....+.+|++++|.|..+.. ...+.|+|  .|+.+...             ...++....   .+.....|.|.+
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~   78 (112)
T d2bnub1           3 TQTPKFQVLKTGQSMTLQCAQDMN-HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSR---STTEDFPLRLLS   78 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSC-CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECC---SSSSBCCEEESS
T ss_pred             EECCCeEEECCCCCEEEEEEEECC-ccceEecccccccCccceeeEeccCceecCccccceeEec---CCCCEEEEEECC
Confidence            455777889999999999987643 46799997  23221100             011111110   122335799999


Q ss_pred             eecCCCccEEEEEec
Q psy3718         120 TERGDSALFTCEIKS  134 (543)
Q Consensus       120 ~~~~D~G~Y~C~a~n  134 (543)
                      +.++|+|.|.|.+..
T Consensus        79 ~~~~DsavYyCA~~~   93 (112)
T d2bnub1          79 AAPSQTSVYFCASSY   93 (112)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             CCHHHCEEEEEeecC
Confidence            999999999998764

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.66  E-value=2.1e-05  Score=57.57  Aligned_cols=46  Identities=11%  Similarity=-0.069  Sum_probs=30.6

Q ss_pred             ccEEEeecC-------CCeEEecCc-eEEEec----CCeEEEEEEecCCCCCC--CceEE
Q psy3718           2 ENFFFYRGF-------NPRILLGRV-LLPIGE----SSFHFDPELLNPSFNGF--PPLLL   47 (543)
Q Consensus         2 ~~~~~~~~~-------~~~~~~~~g-~L~I~~----D~G~Y~C~a~n~~g~~~--s~~l~   47 (543)
                      +.++|++..       +.++...++ .|.|..    |+|.|+|+|.|..|...  ++.|+
T Consensus        37 p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          37 ATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             CEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEEECCCEEEEEEEEEe
Confidence            567887632       233444444 555554    99999999999999863  35553

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=2.6e-05  Score=57.96  Aligned_cols=48  Identities=6%  Similarity=-0.118  Sum_probs=33.8

Q ss_pred             ccEEEeecCCCeE--------E-ecC-----ceEEEec----CCeEEEEEEecCCCCC--CCceEEEe
Q psy3718           2 ENFFFYRGFNPRI--------L-LGR-----VLLPIGE----SSFHFDPELLNPSFNG--FPPLLLSS   49 (543)
Q Consensus         2 ~~~~~~~~~~~~~--------~-~~~-----g~L~I~~----D~G~Y~C~a~n~~g~~--~s~~l~v~   49 (543)
                      |+++|++......        . ..+     ..|.|.+    |+|.|+|.|.|..|..  .++.|.|.
T Consensus        34 P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          34 PHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT  101 (104)
T ss_dssp             CEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeEEEEEEEEEEE
Confidence            6789988553211        1 111     1599999    9999999999999974  35677763

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.00012  Score=53.16  Aligned_cols=80  Identities=11%  Similarity=0.169  Sum_probs=49.5

Q ss_pred             CCCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718          50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFT  129 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~  129 (543)
                      ..|.+...|.. .|..|++++|.|.... ....+..+|+|.......   .. .......+....+.|.+++.+|+|.|+
T Consensus         3 pkPsLsa~P~~-~v~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~---~~-~~~~~~~~~~a~F~l~~v~~~~~G~Y~   76 (98)
T d1ugna2           3 IKPTLSAQPSP-VVNSGGNVTLQCDSQV-AFDGFILCKEGEDEHPQC---LN-SQPHARGSSRAIFSVGPVSPSRRWWYR   76 (98)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECSS-CCSEEEEEEC------CE---EE-C------CCEEEEEECCCCTTSCEEEE
T ss_pred             CCCEEEeeCCC-ccCCCCcEEEEeCCCC-CCCEEEEEECCCcCCcEe---ee-eEEcCCCceEEEEEeeecccCCCeEEE
Confidence            35777777754 4899999999999653 335667778776532110   00 001112334567999999999999999


Q ss_pred             EEEecc
Q psy3718         130 CEIKSQ  135 (543)
Q Consensus       130 C~a~n~  135 (543)
                      |.-...
T Consensus        77 C~y~~~   82 (98)
T d1ugna2          77 CYAYDS   82 (98)
T ss_dssp             EEEECT
T ss_pred             EeeEcC
Confidence            987653

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.62  E-value=0.00014  Score=52.89  Aligned_cols=76  Identities=9%  Similarity=0.058  Sum_probs=52.1

Q ss_pred             CCCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718          50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFT  129 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~  129 (543)
                      .+|.+...|. ..|..|++++|.|.... +...+.|+|+|......    .. ...  ..+....+.|..+...|+|.|+
T Consensus         5 pkPsLsa~P~-~~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~----~~-~~~--~~~~~~~f~~~~~~~~~~G~Y~   75 (99)
T d1nkra2           5 EKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERR----LP-AGP--KVNGTFQADFPLGPATHGGTYR   75 (99)
T ss_dssp             CCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEE----EE-CEE--EETTEEEEEEEEEECCSCEEEE
T ss_pred             CCCEEEEeCC-CcccCCCeEEEEECCCC-CccEEEEEECCCccccE----EE-ccc--cCCccEEEEEeccccccCEEEE
Confidence            4677877775 46789999999998653 45688899998654211    00 000  1222346788889999999999


Q ss_pred             EEEec
Q psy3718         130 CEIKS  134 (543)
Q Consensus       130 C~a~n  134 (543)
                      |.-..
T Consensus        76 C~y~~   80 (99)
T d1nkra2          76 CFGSF   80 (99)
T ss_dssp             EEEEE
T ss_pred             EEeec
Confidence            97655

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.4e-05  Score=57.75  Aligned_cols=44  Identities=14%  Similarity=-0.079  Sum_probs=31.3

Q ss_pred             cEEEeecCC-----C-eEEecCceEEEec----CCeEEEEEEecCCCCCCCceEEE
Q psy3718           3 NFFFYRGFN-----P-RILLGRVLLPIGE----SSFHFDPELLNPSFNGFPPLLLS   48 (543)
Q Consensus         3 ~~~~~~~~~-----~-~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~~s~~l~v   48 (543)
                      +++|++...     + +....+++|.|.+    |+|.|+|.|.|..  ..+..|.|
T Consensus        38 ~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~--~~t~~l~V   91 (93)
T d1n26a1          38 TVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRP--AGTVHLLV   91 (93)
T ss_dssp             EEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESSSSC--SCEEEEEE
T ss_pred             eEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEECCcc--ccEEEEEE
Confidence            578988432     3 3335578999999    9999999998743  23455655

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=9.1e-05  Score=53.12  Aligned_cols=72  Identities=11%  Similarity=0.170  Sum_probs=52.1

Q ss_pred             CCCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEE
Q psy3718          50 APPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFT  129 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~  129 (543)
                      .+|.+...|. ..|..|++++|.|.... +...+.++|+|..-..      . . .  ..+....+.|.+++.+|+|.|+
T Consensus         3 pkPsLsa~P~-~~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~------~-~-~--~~~~~a~F~i~~v~~~~~G~Y~   70 (93)
T d1olla2           3 DTPTLSVHPG-PEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV------Q-R-G--YGKVQAEFPLGPVTTAHRGTYR   70 (93)
T ss_dssp             CCCEEEEESC-SEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE------E-E-E--ECSSEEEEEEEECCGGGCEEEE
T ss_pred             CCCEEEEeCC-CcccCCCcEEEEECCCC-CCCEEEEEECCCccce------e-e-c--CCCceeEEEecccChhcCceEE
Confidence            4677877775 44788999999999753 4468889998764311      1 1 1  1234468999999999999999


Q ss_pred             EEEe
Q psy3718         130 CEIK  133 (543)
Q Consensus       130 C~a~  133 (543)
                      |...
T Consensus        71 C~~~   74 (93)
T d1olla2          71 CFGS   74 (93)
T ss_dssp             EECE
T ss_pred             EEeE
Confidence            9654

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.60  E-value=5.7e-05  Score=56.75  Aligned_cols=77  Identities=12%  Similarity=0.170  Sum_probs=50.4

Q ss_pred             EeecceeEeecCCCeEEEEEeeccCCceEEEccC--CeecC------CCC-------CCceEEeeeecCCCceeeEEEEe
Q psy3718          55 EIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRLD------PKS-------DNRYTIREEILPNGVLSDLSIKR  119 (543)
Q Consensus        55 ~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i~------~~~-------~~~~~~~~~~~~~~~~~~L~i~~  119 (543)
                      ...|..+.+.+|++++|.|..... ...+.|||-  |+.+.      ...       ..++...   ..+.....|.|.+
T Consensus         2 ~QsP~~~~~~~G~svtL~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~   77 (112)
T d2cdeb1           2 YQTPRYLVIGTGKKITLECSQTMG-HDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVS---RIRTEHFPLTLES   77 (112)
T ss_dssp             EEECSEEEEETTCCBCCEEEETTC-CSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEEC---CSSSSBCCEEBSS
T ss_pred             EECCCEEEECCCCCEEEEEEEeCC-cccEEEEEEcCCCCcEEeeeeeccCccccccccccceee---cCCCCceEeeecc
Confidence            456777889999999999997543 467999973  22210      000       0111111   1223345799999


Q ss_pred             eecCCCccEEEEEecc
Q psy3718         120 TERGDSALFTCEIKSQ  135 (543)
Q Consensus       120 ~~~~D~G~Y~C~a~n~  135 (543)
                      ++++|+|.|.|.+...
T Consensus        78 ~~~~Dsa~YyCA~~~~   93 (112)
T d2cdeb1          78 ARPSHTSQYLCASSEN   93 (112)
T ss_dssp             CCTTTCSEEEEEEECS
T ss_pred             ccccccccEEEEEecC
Confidence            9999999999988764

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00012  Score=53.83  Aligned_cols=85  Identities=11%  Similarity=0.186  Sum_probs=49.7

Q ss_pred             CCCeEEeecceeEeecCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC---
Q psy3718          50 APPEFEIKLRNQTSRRGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD---  124 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D---  124 (543)
                      .+|.+.+-+....-..++.++|.|.+.|. |. ..|.|++||..+....   ..-......+|.........+..+|   
T Consensus         4 ~~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~---~~~~~~~~~dgtys~~S~L~v~~~~w~~   80 (102)
T d1rzfl2           4 AAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGV---ETTTPSKQSNNKYAASSYLSLTPEQWKS   80 (102)
T ss_dssp             BCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSE---EECCCEECTTSCEEEEEEEEECHHHHHH
T ss_pred             CCCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCE---EeCCcEECCCCEEEEEEEEEECHHHhCC
Confidence            35666553322222347789999999994 43 6999999999875321   1111111234444444444455544   


Q ss_pred             CccEEEEEecccc
Q psy3718         125 SALFTCEIKSQKI  137 (543)
Q Consensus       125 ~G~Y~C~a~n~~~  137 (543)
                      ...|+|.+.....
T Consensus        81 ~~~ytC~V~H~~~   93 (102)
T d1rzfl2          81 HRSYSCQVTHEGS   93 (102)
T ss_dssp             SSCEEEEEEETTE
T ss_pred             CCEEEEEEEECCc
Confidence            4579999988643

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.56  E-value=6.1e-05  Score=56.61  Aligned_cols=77  Identities=21%  Similarity=0.361  Sum_probs=51.2

Q ss_pred             EEeecceeEeecCCCeEEEEEeeccCCceEEEccC--CeecCCC-------------CCCceEEeeeecCCCceeeEEEE
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRLDPK-------------SDNRYTIREEILPNGVLSDLSIK  118 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i~~~-------------~~~~~~~~~~~~~~~~~~~L~i~  118 (543)
                      ++..|..+.+.+|++++|.|..... ...+.|||-  |+.+...             ...++....   .......|+|.
T Consensus         4 VtQ~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~   79 (113)
T d1nfdb1           4 VVQSPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQ---FDDYHSEMNMS   79 (113)
T ss_dssp             CEEECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEE---CTTSCEEEECC
T ss_pred             EEEcCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEc---CCCCeEEEEec
Confidence            4566788889999999999986543 357999973  2211000             012222211   12334689999


Q ss_pred             eeecCCCccEEEEEec
Q psy3718         119 RTERGDSALFTCEIKS  134 (543)
Q Consensus       119 ~~~~~D~G~Y~C~a~n  134 (543)
                      +++++|+|.|.|.+..
T Consensus        80 ~~~~~Dsa~YyCa~~~   95 (113)
T d1nfdb1          80 ALELEDSAMYFCASSL   95 (113)
T ss_dssp             SCCGGGCEEECEEEES
T ss_pred             ccCcCCceeEEEEeec
Confidence            9999999999998764

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.55  E-value=0.00014  Score=52.46  Aligned_cols=78  Identities=17%  Similarity=0.118  Sum_probs=52.6

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC  130 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  130 (543)
                      .|.+...| ...|..|++++|.|.... ....+.++|+|.....    .... ......+....+.|.+++.+|+|.|+|
T Consensus         2 KPsLsa~P-~~~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~----~~~~-~~~~~~~~~a~F~l~~v~~~~~G~Y~C   74 (96)
T d1nkra1           2 KPSLLAHP-GPLVKSEETVILQCWSDV-MFEHFLLHREGMFNDT----LRLI-GEHHDGVSKANFSISRMTQDLAGTYRC   74 (96)
T ss_dssp             CCEEEEES-CSEEETTCCEEEEEEESS-CCSEEEEEEESSSCEE----EEEE-CEEETTEEEEEEEESSCCGGGCEEEEE
T ss_pred             CCEEEeeC-CCccCCCCcEEEEECCCC-CCCEEEEEECCCcCCc----eeee-eeecCCceEEEEEEcccCcccCeEEEE
Confidence            46666666 466789999999999653 3457788887753210    0011 111133445689999999999999999


Q ss_pred             EEecc
Q psy3718         131 EIKSQ  135 (543)
Q Consensus       131 ~a~n~  135 (543)
                      .-...
T Consensus        75 ~y~~~   79 (96)
T d1nkra1          75 YGSVT   79 (96)
T ss_dssp             EEEBT
T ss_pred             EEEcC
Confidence            87653

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=0.00011  Score=55.70  Aligned_cols=75  Identities=11%  Similarity=0.092  Sum_probs=47.4

Q ss_pred             cceeEeecCCCeEEEEEeeccCC---ceEEEccC--CeecC-----CCC------CCceEEeeeecCCCceeeEEEEeee
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGEKP---IGILWNMN--NKRLD-----PKS------DNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~p~---~~i~W~~~--~~~i~-----~~~------~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      |..+.+.+|++++|.|.......   ..+.|+|.  |+...     ...      ..++.....  .+....+|.|.+++
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~l~   83 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGT--FNESRVNLTIQGLR   83 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEE--EETTEEEEEECSCC
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEe--CCCCEEEEEhhcCc
Confidence            56677889999999999764322   35789973  32110     000      011111111  12334689999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      .+|+|.|.|.+..
T Consensus        84 ~~Dsa~YyCa~~~   96 (117)
T d1dqta_          84 AVDTGLYLCKVEL   96 (117)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCEeEEEEEec
Confidence            9999999998864

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00014  Score=53.65  Aligned_cols=82  Identities=17%  Similarity=0.240  Sum_probs=47.4

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeec-cCC-ceEEEccCCeecCCCCCCceEEe-eeecCCCce---eeEEEEeeecCC
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKG-EKP-IGILWNMNNKRLDPKSDNRYTIR-EEILPNGVL---SDLSIKRTERGD  124 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p~-~~i~W~~~~~~i~~~~~~~~~~~-~~~~~~~~~---~~L~i~~~~~~D  124 (543)
                      +|.+.+-+.......++.++|.|.+.| .|. ..|.|++||..+....   .... .....+|..   +.|.|....-.+
T Consensus         4 ~P~V~v~~p~~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~---~~~~~~~~~~~gtys~~S~L~v~~~~W~~   80 (105)
T d1fp5a2           4 APEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDAR---HSTTQPRKTKGSGFFVFSRLEVTRAEWEQ   80 (105)
T ss_dssp             CCEEEEEECCCCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGG---EEECCCEECSSSCEEEEEEEEECHHHHTT
T ss_pred             CCEEEEECCChHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCce---eEeeeeEecCCCCEEEEEEEEECHHHcCC
Confidence            455443322223345778999999998 454 8999999999874321   1111 111123332   244444333234


Q ss_pred             CccEEEEEecc
Q psy3718         125 SALFTCEIKSQ  135 (543)
Q Consensus       125 ~G~Y~C~a~n~  135 (543)
                      ...|+|.+...
T Consensus        81 g~~ytC~V~H~   91 (105)
T d1fp5a2          81 KDEFICRAVHE   91 (105)
T ss_dssp             GGGEEEEEECT
T ss_pred             CCEEEEEEEEC
Confidence            56899999875

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00014  Score=53.45  Aligned_cols=85  Identities=8%  Similarity=0.162  Sum_probs=48.4

Q ss_pred             CCCeEEeecceeEeecCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeec---CC
Q psy3718          50 APPEFEIKLRNQTSRRGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTER---GD  124 (543)
Q Consensus        50 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~---~D  124 (543)
                      .+|.+.+-+....-..++.++|.|.+.|. |. ..|.|.+||.++..........   ...+|.........+..   ..
T Consensus         4 ~~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~---~~~dgtys~~S~L~v~~~~w~~   80 (102)
T d1q0xl2           4 SSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPS---KQSNNKYMASSYLTLTARAWER   80 (102)
T ss_dssp             BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCE---ECTTSCEEEEEEEEEEHHHHTT
T ss_pred             CCCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccE---EcCCCCEEEEEEEEECHHHhCC
Confidence            35655543322222245678999999985 43 7999999999875321111111   11344333333333443   34


Q ss_pred             CccEEEEEecccc
Q psy3718         125 SALFTCEIKSQKI  137 (543)
Q Consensus       125 ~G~Y~C~a~n~~~  137 (543)
                      ...|+|.+.....
T Consensus        81 ~~~ytC~V~H~~~   93 (102)
T d1q0xl2          81 HSSYSCQVTHEGH   93 (102)
T ss_dssp             CCEEEEEEEETTE
T ss_pred             CCEEEEEEEECCc
Confidence            6789999987543

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.53  E-value=9.4e-05  Score=55.23  Aligned_cols=72  Identities=21%  Similarity=0.297  Sum_probs=48.1

Q ss_pred             eEeecCCCeEEEEEeeccCC----ceEEEccC--CeecCCC--------------CCCceEEeeeecCCCceeeEEEEee
Q psy3718          61 QTSRRGEPSVLQCEAKGEKP----IGILWNMN--NKRLDPK--------------SDNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~----~~i~W~~~--~~~i~~~--------------~~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      ..+++|++++|.|.++|...    ..+.|+|.  |+.+...              -..|+.+..+  .......|+|.++
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d--~s~~~~~L~i~~l   87 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKD--ASKKQVVLTLTNL   87 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECC--TTTTEEEEEEESC
T ss_pred             eeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecc--cccceeeeeEEee
Confidence            44678999999999987532    46889963  3321110              0235555432  2234468999999


Q ss_pred             ecCCCccEEEEEec
Q psy3718         121 ERGDSALFTCEIKS  134 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n  134 (543)
                      +++|++.|-|....
T Consensus        88 ~~eDsAvYyCAr~~  101 (120)
T d2agjh1          88 DPVDTATYYCARTS  101 (120)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             eeccceEEeeEecC
Confidence            99999999997544

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.53  E-value=2.8e-05  Score=57.79  Aligned_cols=40  Identities=8%  Similarity=-0.209  Sum_probs=30.5

Q ss_pred             ccEEEeecCC-------C-eEE-ecCceEEEec----CCeEEEEEEecCCCCC
Q psy3718           2 ENFFFYRGFN-------P-RIL-LGRVLLPIGE----SSFHFDPELLNPSFNG   41 (543)
Q Consensus         2 ~~~~~~~~~~-------~-~~~-~~~g~L~I~~----D~G~Y~C~a~n~~g~~   41 (543)
                      +.++|++...       . +.. ..+|+|.|.+    |+|.|+|.|.|..|..
T Consensus        35 ~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~   87 (105)
T d1cs6a2          35 LSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFI   87 (105)
T ss_dssp             CEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             CEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCE
Confidence            4678987432       2 223 4578999999    9999999999988864

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.49  E-value=0.0002  Score=52.94  Aligned_cols=71  Identities=20%  Similarity=0.254  Sum_probs=49.4

Q ss_pred             eEeecCCCeEEEEEeeccCC--ceEEEcc--CCeec------CCC--------CCCceEEeeeecCCCceeeEEEEeeec
Q psy3718          61 QTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKRL------DPK--------SDNRYTIREEILPNGVLSDLSIKRTER  122 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i------~~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~  122 (543)
                      -.+++|++++|.|.++|...  -.+.|+|  .|+.+      ...        -..|+++..+.  ......|.|.+++.
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~--s~nt~~L~i~~l~~   87 (120)
T d1dn0b1          10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDT--SKNQFSLKLSSVTA   87 (120)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEET--TTTEEEEEECSCCG
T ss_pred             cEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccC--chheeccccccccc
Confidence            45789999999999998754  4677886  33322      111        13467776542  33345799999999


Q ss_pred             CCCccEEEEEe
Q psy3718         123 GDSALFTCEIK  133 (543)
Q Consensus       123 ~D~G~Y~C~a~  133 (543)
                      +|++.|-|...
T Consensus        88 eDtA~YYCAr~   98 (120)
T d1dn0b1          88 ADTAVYYCARP   98 (120)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccccEEEEEee
Confidence            99999999433

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.48  E-value=0.00015  Score=54.51  Aligned_cols=75  Identities=15%  Similarity=0.296  Sum_probs=48.9

Q ss_pred             eecceeEeecCCCeEEEEEeeccCCceEEEccC--CeecC------CCC-------CCceEEeeeecCCCceeeEEEEee
Q psy3718          56 IKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRLD------PKS-------DNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        56 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i~------~~~-------~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      ..|..+.+.+|++++|.|..+. ....+.|+|-  ++.+.      ...       ..++...   .......+|.|.++
T Consensus         4 QsP~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~I~~~   79 (114)
T d1ogae1           4 QSPKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVS---REKKESFPLTVTSA   79 (114)
T ss_dssp             CSCSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEEC---CSSTTBCCEEECSC
T ss_pred             EcCCeEEEcCCCCEEEEEEEec-CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEE---cccCCeEEEEECcC
Confidence            4467788899999999999763 4468999962  22110      000       0111111   11233457999999


Q ss_pred             ecCCCccEEEEEec
Q psy3718         121 ERGDSALFTCEIKS  134 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n  134 (543)
                      .++|+|.|.|.+..
T Consensus        80 ~~~DSa~YyCa~~~   93 (114)
T d1ogae1          80 QKNPTAFYLCASSS   93 (114)
T ss_dssp             CSCCCEEEEEEEES
T ss_pred             CcCCceeEEEeecc
Confidence            99999999997665

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.46  E-value=0.0004  Score=51.54  Aligned_cols=73  Identities=23%  Similarity=0.377  Sum_probs=49.1

Q ss_pred             eeEeecCCCeEEEEEeeccCC--ceEEEcc--CCeec------CCC---------CCCceEEeeeecCCCceeeEEEEee
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKRL------DPK---------SDNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i------~~~---------~~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      ...+++|++++|.|.++|...  -.+.|+|  .|+.+      ...         -..|+++..+  .......|+|.++
T Consensus         9 ~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d--~s~~~~~L~i~~L   86 (119)
T d1qnzh_           9 AELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVE--KSSSTVYLEFSRL   86 (119)
T ss_dssp             CCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEE--TTTTEEEEEEEEE
T ss_pred             CceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecc--cccceeeeeeccc
Confidence            346788999999999998643  4578886  34321      111         1245666443  2333457999999


Q ss_pred             ecCCCccEEEEEec
Q psy3718         121 ERGDSALFTCEIKS  134 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n  134 (543)
                      +++|++.|-|....
T Consensus        87 ~~eDsAvYYCA~~~  100 (119)
T d1qnzh_          87 TSDDSAVYYCAIHY  100 (119)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             CccceeEEEEEEec
Confidence            99999999996543

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.46  E-value=0.0003  Score=51.67  Aligned_cols=74  Identities=16%  Similarity=0.199  Sum_probs=50.6

Q ss_pred             ceeEeecCCCeEEEEEeeccCC--ceEEEcc--CCeec------CCCC--------CCceEEeeeecCCCceeeEEEEee
Q psy3718          59 RNQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKRL------DPKS--------DNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i------~~~~--------~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      ....+++|++++|.|.++|...  -.+.|+|  .|+-+      ....        ..|+++..+  .......|+|.++
T Consensus         8 G~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D--~s~~~~~L~i~~L   85 (116)
T d7fabh1           8 GPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVN--TSKNQFSLRLSSV   85 (116)
T ss_dssp             CCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEE--TTTTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecc--cchhhhhcccccc
Confidence            3445789999999999998754  4677886  33322      1111        245555543  2333467999999


Q ss_pred             ecCCCccEEEEEec
Q psy3718         121 ERGDSALFTCEIKS  134 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n  134 (543)
                      +.+|++.|-|....
T Consensus        86 ~~eDtAvYyCAr~~   99 (116)
T d7fabh1          86 TAADTAVYYCARNL   99 (116)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             ccccceEEEeeeec
Confidence            99999999997644

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.45  E-value=0.00015  Score=52.52  Aligned_cols=69  Identities=23%  Similarity=0.342  Sum_probs=45.8

Q ss_pred             eecCCCeEEEEEeeccC--CceEEEccC--Ceec------C--------CCCCCceEEeeeecCCCceeeEEEEeeecCC
Q psy3718          63 SRRGEPSVLQCEAKGEK--PIGILWNMN--NKRL------D--------PKSDNRYTIREEILPNGVLSDLSIKRTERGD  124 (543)
Q Consensus        63 v~~g~~~~l~C~~~g~p--~~~i~W~~~--~~~i------~--------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D  124 (543)
                      +++|++++|.|.++|..  .-.+.|+|.  |+-+      .        ..-..|+++..+.  ....-.|+|.+++.+|
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~--s~n~~~L~i~~l~~eD   82 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDN--AKKTVYLEMNSLEPED   82 (107)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECT--TTCCEEEEECSCCGGG
T ss_pred             ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCC--ceeEEEEeecCCCccc
Confidence            57899999999998853  346678763  3221      1        1112466665442  2334579999999999


Q ss_pred             CccEEEEEe
Q psy3718         125 SALFTCEIK  133 (543)
Q Consensus       125 ~G~Y~C~a~  133 (543)
                      ++.|-|...
T Consensus        83 tAvYyCA~~   91 (107)
T d1sjva_          83 TAVYYCYTH   91 (107)
T ss_dssp             CSEEEEEEC
T ss_pred             ceeeeEecc
Confidence            999999654

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=2.7e-05  Score=56.33  Aligned_cols=35  Identities=17%  Similarity=0.236  Sum_probs=30.4

Q ss_pred             eEEEecceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718         507 RIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKT  541 (543)
Q Consensus       507 ~~~~~~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~  541 (543)
                      .+......+.+..|+++.|.|.+.|.|.|+++|+|
T Consensus         4 ~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~   38 (92)
T d2ifga1           4 TLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWIL   38 (92)
T ss_dssp             EEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEE
T ss_pred             EEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEE
Confidence            34445567889999999999999999999999997

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00018  Score=54.53  Aligned_cols=75  Identities=11%  Similarity=0.113  Sum_probs=47.7

Q ss_pred             cceeEeecCCCeEEEEEeeccCC---ceEEEccC--CeecC-------CCC----CCceEEeeeecCCCceeeEEEEeee
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGEKP---IGILWNMN--NKRLD-------PKS----DNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~p~---~~i~W~~~--~~~i~-------~~~----~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      |..+.+.+|+.++|.|.......   ..+.|+|.  ++...       ...    ..+....  ...+....+|.|.+++
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~I~~l~   83 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICT--GTSSGNQVNLTIQGLR   83 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCC--CCBCSSEEEEEECSCC
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEe--EcCCCCEEEEEeeccc
Confidence            55677889999999999754432   35889974  22110       000    0011100  1123445789999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      .+|+|.|.|.+..
T Consensus        84 ~~Dsa~YyCa~~~   96 (118)
T d1i8lc_          84 AMDTGLYICKVEL   96 (118)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCCCEEEEEeEec
Confidence            9999999998765

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=97.42  E-value=4.1e-05  Score=56.58  Aligned_cols=38  Identities=18%  Similarity=0.398  Sum_probs=33.3

Q ss_pred             cCceEEEecceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718         504 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKT  541 (543)
Q Consensus       504 v~~~~~~~~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~  541 (543)
                      +++.+...+..+.+..|+++.|.|.+.|.|.|+|+|+|
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k   44 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFK   44 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEE
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEe
Confidence            35566666777999999999999999999999999997

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=0.00022  Score=52.16  Aligned_cols=68  Identities=22%  Similarity=0.303  Sum_probs=42.0

Q ss_pred             ecCCCeEEEEEeec-cCC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC--CccEEEEEecccc
Q psy3718          64 RRGEPSVLQCEAKG-EKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD--SALFTCEIKSQKI  137 (543)
Q Consensus        64 ~~g~~~~l~C~~~g-~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D--~G~Y~C~a~n~~~  137 (543)
                      ..++.++|.|.+.| .|. ..|.|.+++.........      ....+|....-....+..+|  .|.|+|.+....+
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~------~~~~~g~~s~~S~L~v~~~~w~~~~ytC~V~H~~~   89 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVS------AVLQSGLYTLSSNTTVASGTWPSASVTCLVAHPKS   89 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECC------CEEETTEEEEEEEEEEETTTTTTSCCEEEEEEGGG
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeee------eecCCCCEEEEEEEEEchhhcCCCeEEEEEEeCCC
Confidence            46889999999999 454 799999888653211111      11124443333333344443  7899999988643

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=9.3e-05  Score=54.89  Aligned_cols=74  Identities=15%  Similarity=0.316  Sum_probs=51.1

Q ss_pred             ceeEeecCCCeEEEEEeecc--CCceEEEccC--Cee----cCCCC---------CCceEEeeeecCCCceeeEEEEeee
Q psy3718          59 RNQTSRRGEPSVLQCEAKGE--KPIGILWNMN--NKR----LDPKS---------DNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g~--p~~~i~W~~~--~~~----i~~~~---------~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      +...+.+|++++|.|..++.  ..-.+.|+|.  ++.    +....         ..|+.+..+  .......|+|.+++
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d--~~~~~~~lti~~L~   80 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHD--PSEAMLQVQMTDLQ   80 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEE--GGGTEEEEEECSCC
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEE--CCCCEEEEEECccc
Confidence            45678999999999998864  4457889973  321    11110         135555543  23445679999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      .+|+|.|.|....
T Consensus        81 ~eDsa~YyCa~~~   93 (110)
T d1u9ka_          81 VTDSGLYRCVIYH   93 (110)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cCCCEEEEEEEeC
Confidence            9999999998754

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.40  E-value=3.1e-05  Score=56.97  Aligned_cols=38  Identities=29%  Similarity=0.602  Sum_probs=30.7

Q ss_pred             cCceEEEecc--eEEEeecCceeecceecCCCCCeeeEEe
Q psy3718         504 VPARIASFND--NFTATYTEDIKLPCLTVGVPAPEIIWKT  541 (543)
Q Consensus       504 v~~~~~~~~~--~~~~~~~~~~~l~c~~~g~p~p~~~w~~  541 (543)
                      +|+.|.....  .+++..|++++|.|.+.|.|.|+|+|+|
T Consensus         2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~   41 (100)
T d1qz1a3           2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTK   41 (100)
T ss_dssp             EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEE
T ss_pred             cCCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEe
Confidence            4566655444  3567789999999999999999999997

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=97.40  E-value=3.5e-05  Score=57.76  Aligned_cols=31  Identities=19%  Similarity=0.418  Sum_probs=29.1

Q ss_pred             ecceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718         511 FNDNFTATYTEDIKLPCLTVGVPAPEIIWKT  541 (543)
Q Consensus       511 ~~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~  541 (543)
                      ++..+++..|++++|.|.+.|.|.|+|.|+|
T Consensus        11 ~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k   41 (109)
T d2fdbp2          11 LPANASTVVGGDVEFVCKVYSDAQPHIQWIK   41 (109)
T ss_dssp             CSCCEEECTTCCEEEEEEEECSSCCEEEEEE
T ss_pred             CCCCEEEecCCcEEEEEEEEEcCCCeEEEEe
Confidence            4677999999999999999999999999987

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.0001  Score=54.88  Aligned_cols=85  Identities=19%  Similarity=0.281  Sum_probs=50.2

Q ss_pred             CCeEEe-ecceeEeecCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEE-eeeecCCCceeeEEEEeeecCC--
Q psy3718          51 PPEFEI-KLRNQTSRRGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTI-REEILPNGVLSDLSIKRTERGD--  124 (543)
Q Consensus        51 ~p~~~~-~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~D--  124 (543)
                      +|.+.+ .|....+..|+.++|.|.+.|. |. ..|.|++||..+.......... .....++|.........+..+|  
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~   83 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWK   83 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHH
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhC
Confidence            565554 3445556678999999999984 54 6999999999875321110000 0011123333333333344443  


Q ss_pred             -CccEEEEEecc
Q psy3718         125 -SALFTCEIKSQ  135 (543)
Q Consensus       125 -~G~Y~C~a~n~  135 (543)
                       ...|+|.+...
T Consensus        84 ~g~~ytC~V~H~   95 (108)
T d1ow0a2          84 KGDTFSCMVGHE   95 (108)
T ss_dssp             HTCCEEEEEECT
T ss_pred             CCCEEEEEEEeC
Confidence             67999999885

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=6.8e-05  Score=53.03  Aligned_cols=34  Identities=24%  Similarity=0.541  Sum_probs=30.1

Q ss_pred             EEEecceEEEeecCceeecceecCCCCC-eeeEEe
Q psy3718         508 IASFNDNFTATYTEDIKLPCLTVGVPAP-EIIWKT  541 (543)
Q Consensus       508 ~~~~~~~~~~~~~~~~~l~c~~~g~p~p-~~~w~~  541 (543)
                      +...+..+.+..|+++.|.|.+.|.|.| +|.|+|
T Consensus         4 f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k   38 (85)
T d1rhfa2           4 FTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWR   38 (85)
T ss_dssp             EEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEE
T ss_pred             EEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEE
Confidence            4445677889999999999999999999 999997

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.39  E-value=0.00023  Score=52.68  Aligned_cols=72  Identities=22%  Similarity=0.383  Sum_probs=49.3

Q ss_pred             eEeecCCCeEEEEEeeccCC--ceEEEccC--Cee------cCCCC--------CCceEEeeeecCCCceeeEEEEeeec
Q psy3718          61 QTSRRGEPSVLQCEAKGEKP--IGILWNMN--NKR------LDPKS--------DNRYTIREEILPNGVLSDLSIKRTER  122 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~--~~i~W~~~--~~~------i~~~~--------~~~~~~~~~~~~~~~~~~L~i~~~~~  122 (543)
                      -.+.+|++++|.|.++|...  -.+.|+|.  |+-      +..+.        ..|+++..+.  ......|.|.++++
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~--s~~~~~L~i~~L~~   86 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGN--AKNTAYLQMDSLKP   86 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECS--STTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEeccc--CCcceecccccCCc
Confidence            45689999999999998653  46778863  221      11111        2466665432  23345799999999


Q ss_pred             CCCccEEEEEec
Q psy3718         123 GDSALFTCEIKS  134 (543)
Q Consensus       123 ~D~G~Y~C~a~n  134 (543)
                      +|++.|-|....
T Consensus        87 eDtA~YYCAr~~   98 (119)
T d1kxvc_          87 DDTAMYYCKPSL   98 (119)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCcceEeeeecc
Confidence            999999996544

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=97.37  E-value=1.9e-05  Score=56.96  Aligned_cols=33  Identities=24%  Similarity=0.456  Sum_probs=29.4

Q ss_pred             EEecceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718         509 ASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKT  541 (543)
Q Consensus       509 ~~~~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~  541 (543)
                      ...+..+.+..|+++.|.|.+.|.|.|.|.|+|
T Consensus         3 i~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~   35 (91)
T d1tnna_           3 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLR   35 (91)
T ss_dssp             SBCCCCEECSSSSCCCEEEECCCSSCCCCEEES
T ss_pred             EeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEE
Confidence            344567899999999999999999999999986

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.37  E-value=7.3e-05  Score=54.53  Aligned_cols=38  Identities=13%  Similarity=-0.075  Sum_probs=29.7

Q ss_pred             CeEEecCceEEEec----CCeEEEEEEecCCCCC---CCceEEEe
Q psy3718          12 PRILLGRVLLPIGE----SSFHFDPELLNPSFNG---FPPLLLSS   49 (543)
Q Consensus        12 ~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~---~s~~l~v~   49 (543)
                      +.....+|+|+|.+    |+|.|+|.+.+..|..   .+..|.|.
T Consensus        53 ~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          53 AFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             TEEECTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEE
T ss_pred             eEEECCCccEEEeCCCHHHCEEEEEEEEeCCCCEEEEEEEEEEEE
Confidence            34456789999999    9999999999998875   23466653

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=3.3e-05  Score=56.02  Aligned_cols=75  Identities=13%  Similarity=0.152  Sum_probs=50.0

Q ss_pred             CCeEEeecceeEeecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEE
Q psy3718          51 PPEFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTC  130 (543)
Q Consensus        51 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C  130 (543)
                      .|.+...|. ..|..|++++|.|... .+...+..+|+|.......  +..     ...+....+.|.+++.+|+|.|+|
T Consensus         4 kP~Lsa~Ps-~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~--~~~-----~~~~~~a~F~i~~v~~~~~G~Y~C   74 (96)
T d1ugna1           4 KPTLWAEPG-SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWIT--RIP-----QELVKKGQFPIPSITWEHTGRYRC   74 (96)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHH--TSC-----HHHHTTTEEEESSCCGGGCEEEEE
T ss_pred             CCEEEeECC-CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEE--Ecc-----CCCCCEEEEEEEecCHHHCCeEEE
Confidence            567777776 4578999999999964 3446777788875321000  000     001122479999999999999999


Q ss_pred             EEec
Q psy3718         131 EIKS  134 (543)
Q Consensus       131 ~a~n  134 (543)
                      ....
T Consensus        75 ~y~~   78 (96)
T d1ugna1          75 YYGS   78 (96)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            8654

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.37  E-value=0.00044  Score=50.64  Aligned_cols=73  Identities=18%  Similarity=0.311  Sum_probs=50.6

Q ss_pred             eeEeecCCCeEEEEEeeccCC--ceEEEcc--CCeec------CC--------CCCCceEEeeeecCCCceeeEEEEeee
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKRL------DP--------KSDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i------~~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      ...+++|++++|.|.++|...  -.+.|+|  .|+.+      ..        .-..|+++..+.  ......|.|.+++
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~--s~n~~~L~~~sL~   86 (117)
T d1c5db1           9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDT--SKSQVFLKMNSLQ   86 (117)
T ss_dssp             CSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEET--TTTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEeccc--ccceeeccccccc
Confidence            345789999999999998754  4677876  33332      11        113467666542  3334579999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      ++|++.|-|....
T Consensus        87 ~eDtAvYYCAr~~   99 (117)
T d1c5db1          87 TEDTAIYFCTRED   99 (117)
T ss_dssp             GGGCEEEEEEECC
T ss_pred             cCcceEEEEeccC
Confidence            9999999996543

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=2.8e-05  Score=56.74  Aligned_cols=31  Identities=6%  Similarity=-0.047  Sum_probs=26.4

Q ss_pred             ceEEEec----CCeEEEEEEecCCCCC-CC-ceEEEe
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSFNG-FP-PLLLSS   49 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s-~~l~v~   49 (543)
                      ++|.|.+    |+|.|+|+|.|..|.. ++ +.|.|+
T Consensus        60 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          60 ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK   96 (96)
T ss_dssp             EEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eEEEECCCCHHHCeEEEEEEEeCCCeEEEEEEEEEEC
Confidence            5799999    9999999999999985 33 788774

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=0.00021  Score=52.25  Aligned_cols=67  Identities=15%  Similarity=0.273  Sum_probs=41.8

Q ss_pred             cCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC---CccEEEEEecc
Q psy3718          65 RGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD---SALFTCEIKSQ  135 (543)
Q Consensus        65 ~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D---~G~Y~C~a~n~  135 (543)
                      ..+.++|.|.+.|. |. ..|.|++||.++......    ......+|.........+..+|   ...|+|.+...
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~----~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~   88 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNT----QPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHE   88 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEEC----CCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEe----eeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence            45678999999994 54 899999999887421111    1111234443333334444443   56799999875

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=0.00021  Score=52.94  Aligned_cols=82  Identities=12%  Similarity=0.192  Sum_probs=46.1

Q ss_pred             CCeEEee-cceeEeecCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC---
Q psy3718          51 PPEFEIK-LRNQTSRRGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD---  124 (543)
Q Consensus        51 ~p~~~~~-~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D---  124 (543)
                      +|.+.+- |.... ..+..++|.|.+.|. |. ..|.|.+||..+....  .-........+|....-....+..+|   
T Consensus         5 ~P~V~l~~ps~~~-~~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~--~~~~~~~~~~dgtys~~S~L~v~~~~W~~   81 (107)
T d1mjul2           5 APTVSIFPPSSEQ-LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGV--LNSWTDQDSKDSTYSMSSTLTLTKDEYER   81 (107)
T ss_dssp             CCEEEEECCCHHH-HTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTE--EEEECCCCTTTCCEEEEEEEEEEHHHHHT
T ss_pred             CCEEEEECCCHHH-hcCCceEEEEEEEEeECCCCEEEEEECCEEccCCe--EeccccEecCCCCEEEEEEEEECHHHhCC
Confidence            4554443 33222 246779999999984 54 7999999998874211  00111111123433333333444444   


Q ss_pred             CccEEEEEecc
Q psy3718         125 SALFTCEIKSQ  135 (543)
Q Consensus       125 ~G~Y~C~a~n~  135 (543)
                      ...|+|.+...
T Consensus        82 g~~ytC~V~H~   92 (107)
T d1mjul2          82 HNSYTCEATHK   92 (107)
T ss_dssp             CCEEEEEEECT
T ss_pred             CCEEEEEEEEC
Confidence            56799999874

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.34  E-value=0.00061  Score=50.50  Aligned_cols=73  Identities=19%  Similarity=0.381  Sum_probs=50.0

Q ss_pred             eeEeecCCCeEEEEEeeccCC--ceEEEcc--CCeec------CCCC---------CCceEEeeeecCCCceeeEEEEee
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKRL------DPKS---------DNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i------~~~~---------~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      ...+++|+.++|.|.++|...  -.+.|+|  .|+.+      ....         ..|+++..+.  ....-.|.|.++
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~--s~n~v~L~i~~l   86 (120)
T d1pg7x1           9 PELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDR--SSTTAYIELVRL   86 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEET--TTTEEEEEECSC
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeecc--CcceEEcccccc
Confidence            345789999999999998653  4678886  34422      1111         2356655432  233457999999


Q ss_pred             ecCCCccEEEEEec
Q psy3718         121 ERGDSALFTCEIKS  134 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n  134 (543)
                      +.+|++.|-|....
T Consensus        87 ~~eDtA~YYCAr~~  100 (120)
T d1pg7x1          87 TSNDSAVYYCARED  100 (120)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCCcceEEEeeecC
Confidence            99999999998654

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.34  E-value=0.00022  Score=52.28  Aligned_cols=67  Identities=16%  Similarity=0.238  Sum_probs=42.1

Q ss_pred             cCCCeEEEEEeec-cCC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC---CccEEEEEecc
Q psy3718          65 RGEPSVLQCEAKG-EKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD---SALFTCEIKSQ  135 (543)
Q Consensus        65 ~g~~~~l~C~~~g-~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D---~G~Y~C~a~n~  135 (543)
                      .++.++|.|.+.| .|. ..|.|.+||.......    ........+|..+......+..+|   ...|+|.+...
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~----~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~   89 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYK----NTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHE   89 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEE----ECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcE----EccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeC
Confidence            5778999999999 454 7999999998753211    111111234443444444455543   56799999875

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00029  Score=51.77  Aligned_cols=85  Identities=18%  Similarity=0.245  Sum_probs=48.7

Q ss_pred             CCCeEEee-cc-eeEeecCCCeEEEEEeec-cCC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC-
Q psy3718          50 APPEFEIK-LR-NQTSRRGEPSVLQCEAKG-EKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD-  124 (543)
Q Consensus        50 ~~p~~~~~-~~-~~~v~~g~~~~l~C~~~g-~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D-  124 (543)
                      .||.+.+- +. +.....+.+++|.|.+.| .|. ..|.|++||..+..... ...   ....++.........+..+| 
T Consensus         3 ~pP~V~v~~~s~~~~~~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~-~~~---~~~~~~~y~~~S~L~v~~~~w   78 (104)
T d1o0va1           3 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLS-TAS---TTQEGELASTQSELTLSQKHW   78 (104)
T ss_dssp             CCCEEEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGE-EEE---EEEETTEEEEEEEEEEEHHHH
T ss_pred             CCCEEEEECCCcccccCCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCce-eee---EeCCCCeEEEEEEEEECHHHc
Confidence            35655442 22 222345677899999998 454 68999999998753211 111   11123332233333344443 


Q ss_pred             --CccEEEEEecccce
Q psy3718         125 --SALFTCEIKSQKIS  138 (543)
Q Consensus       125 --~G~Y~C~a~n~~~s  138 (543)
                        ...|+|.+.....+
T Consensus        79 ~~~~~ytC~V~H~~~t   94 (104)
T d1o0va1          79 LSDRTYTCQVTYQGHT   94 (104)
T ss_dssp             HTTCCEEEEEEETTEE
T ss_pred             CCCCEEEEEEEECCEe
Confidence              56799999986444

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.30  E-value=0.00054  Score=50.25  Aligned_cols=71  Identities=20%  Similarity=0.397  Sum_probs=48.7

Q ss_pred             ceeEeecCCCeEEEEEeeccCC--ceEEEccC--Ce------ecCCCC---------CCceEEeeeecCCCceeeEEEEe
Q psy3718          59 RNQTSRRGEPSVLQCEAKGEKP--IGILWNMN--NK------RLDPKS---------DNRYTIREEILPNGVLSDLSIKR  119 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~~--~~------~i~~~~---------~~~~~~~~~~~~~~~~~~L~i~~  119 (543)
                      ....+++|+.++|.|.++|...  -.+.|+|.  |+      .|.+..         ..|+++..+..  ...-.|.|.+
T Consensus         8 g~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s--~~tvyL~~~~   85 (118)
T d1nlbh1           8 GPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETS--ASTAYLQINS   85 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGG--GTEEEEEECS
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCC--ceeEEeeeee
Confidence            3455789999999999998653  46778762  32      122221         24666665432  2335799999


Q ss_pred             eecCCCccEEEE
Q psy3718         120 TERGDSALFTCE  131 (543)
Q Consensus       120 ~~~~D~G~Y~C~  131 (543)
                      ++.+|++.|-|.
T Consensus        86 L~~eDtAvYYCA   97 (118)
T d1nlbh1          86 LKNEDTATYFCA   97 (118)
T ss_dssp             CCGGGCEEEEEE
T ss_pred             cccCcceEEEEe
Confidence            999999999994

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.29  E-value=0.00059  Score=50.11  Aligned_cols=73  Identities=18%  Similarity=0.325  Sum_probs=49.6

Q ss_pred             cceeEeecCCCeEEEEEeeccCC--ceEEEcc--CCee------cCCCC---------CCceEEeeeecCCCceeeEEEE
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKR------LDPKS---------DNRYTIREEILPNGVLSDLSIK  118 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~------i~~~~---------~~~~~~~~~~~~~~~~~~L~i~  118 (543)
                      +....+++|++++|.|.++|...  -.+.|+|  .|+-      |....         ..|+++..+.  ......|.|.
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~--s~~t~~L~~~   84 (118)
T d2jelh1           7 SGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDK--SSSTAYMELA   84 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEG--GGTEEEEEEC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEeccc--CcceEeeccc
Confidence            34456789999999999998764  4678886  3332      22111         1456665432  2233579999


Q ss_pred             eeecCCCccEEEEE
Q psy3718         119 RTERGDSALFTCEI  132 (543)
Q Consensus       119 ~~~~~D~G~Y~C~a  132 (543)
                      +++.+|++.|-|..
T Consensus        85 sL~~eDTAvYYCAr   98 (118)
T d2jelh1          85 RLTSEDSAIYYCAR   98 (118)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccccCcceeeeEEE
Confidence            99999999999943

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.29  E-value=0.00087  Score=49.22  Aligned_cols=74  Identities=16%  Similarity=0.270  Sum_probs=49.1

Q ss_pred             ecceeEeecCCCeEEEEEeeccCC--ceEEEcc--CCeec------CCC---------CCCceEEeeeecCCCceeeEEE
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKRL------DPK---------SDNRYTIREEILPNGVLSDLSI  117 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i------~~~---------~~~~~~~~~~~~~~~~~~~L~i  117 (543)
                      ++....+++|++++|.|.++|...  --+.|+|  .|+-+      ...         -..|+++..+.  ......|.|
T Consensus         6 qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~--s~~~~~L~i   83 (117)
T d1mfah1           6 QSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVT--STTTAYMEL   83 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEET--TTTEEEEEE
T ss_pred             eECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEccc--CccEeEeee
Confidence            344556789999999999998643  4566775  33321      111         12355555432  233457999


Q ss_pred             EeeecCCCccEEEEE
Q psy3718         118 KRTERGDSALFTCEI  132 (543)
Q Consensus       118 ~~~~~~D~G~Y~C~a  132 (543)
                      .+++.+|++.|-|..
T Consensus        84 ~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          84 SSLTSEDSAVYYCTR   98 (117)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCCCcceEEEEec
Confidence            999999999999964

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.29  E-value=0.00083  Score=48.51  Aligned_cols=74  Identities=18%  Similarity=0.270  Sum_probs=50.1

Q ss_pred             ceeEeecCCCeEEEEEeeccCC--ceEEEcc--CCeec------CC-----------CCCCceEEeeeecCCCceeeEEE
Q psy3718          59 RNQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKRL------DP-----------KSDNRYTIREEILPNGVLSDLSI  117 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i------~~-----------~~~~~~~~~~~~~~~~~~~~L~i  117 (543)
                      ....+++|++++|+|.++|...  --+.|+|  .|+-+      ..           .-..|+++..+.  ....-.|.|
T Consensus         8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~--s~~t~~L~i   85 (109)
T d2ck0h1           8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDD--SQSMLYLQM   85 (109)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEET--TTTEEEEEE
T ss_pred             CCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceecccc--ccceeEecc
Confidence            3456789999999999998654  4677775  23211      11           112466666542  233357999


Q ss_pred             EeeecCCCccEEEEEec
Q psy3718         118 KRTERGDSALFTCEIKS  134 (543)
Q Consensus       118 ~~~~~~D~G~Y~C~a~n  134 (543)
                      .+++.+|++.|-|....
T Consensus        86 ~sL~~eDTAvYYCAr~~  102 (109)
T d2ck0h1          86 NNLKTEDTGIYYCVRGR  102 (109)
T ss_dssp             CSCCGGGCEEEEEEEEC
T ss_pred             cCCCHhHCEEEEEEEcC
Confidence            99999999999997543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.29  E-value=0.00047  Score=50.56  Aligned_cols=73  Identities=16%  Similarity=0.248  Sum_probs=49.4

Q ss_pred             eeEeecCCCeEEEEEeeccCC--ceEEEccC--Ceec------CCC--------CCCceEEeeeecCCCceeeEEEEeee
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKP--IGILWNMN--NKRL------DPK--------SDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~--~~i~W~~~--~~~i------~~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      ...+++|++++|.|.++|...  -.+.|+|.  |+-+      ...        -..|+++..+.  ....-.|+|.+++
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~--s~n~~~L~~~~l~   86 (116)
T d1a2yb_           9 PGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDN--SKSQVFLKMNSLH   86 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEG--GGTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccC--CCceEEcceeeee
Confidence            345789999999999998654  46778763  3321      111        12356665432  2233579999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      .+|++.|-|....
T Consensus        87 ~eDTAvYYCAr~~   99 (116)
T d1a2yb_          87 TDDTARYYCARER   99 (116)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             eccceEEEEEEeC
Confidence            9999999997544

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.28  E-value=9.4e-05  Score=53.91  Aligned_cols=34  Identities=9%  Similarity=0.220  Sum_probs=29.7

Q ss_pred             EEEecceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718         508 IASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKT  541 (543)
Q Consensus       508 ~~~~~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~  541 (543)
                      +...+..+.+..|+++.|.|.+.|.|.|+|+|+|
T Consensus         4 f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~   37 (97)
T d1koaa1           4 FIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHK   37 (97)
T ss_dssp             EEECCCCCEEETTSCEEEEEEEECSSCCEEEEEE
T ss_pred             EEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEE
Confidence            3344566889999999999999999999999997

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.28  E-value=0.00063  Score=50.29  Aligned_cols=75  Identities=16%  Similarity=0.353  Sum_probs=51.6

Q ss_pred             cceeEeecCCCeEEEEEeeccCC--ceEEEcc--CCee------cCCC---------CCCceEEeeeecCCCceeeEEEE
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKR------LDPK---------SDNRYTIREEILPNGVLSDLSIK  118 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~------i~~~---------~~~~~~~~~~~~~~~~~~~L~i~  118 (543)
                      +....+++|++++|.|.++|...  --+.|+|  .|+.      |...         -..|+++..+.  ....-.|.|.
T Consensus         8 sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~--s~ntvyL~~~   85 (122)
T d1vgeh1           8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDT--SATTAYMGLS   85 (122)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEET--TTTEEEEEEC
T ss_pred             cCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccC--Ccceeeeccc
Confidence            44456889999999999998754  4677876  2322      1111         12566665542  3334579999


Q ss_pred             eeecCCCccEEEEEec
Q psy3718         119 RTERGDSALFTCEIKS  134 (543)
Q Consensus       119 ~~~~~D~G~Y~C~a~n  134 (543)
                      +++++|++.|-|....
T Consensus        86 ~L~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          86 SLRPEDTAVYYCARDP  101 (122)
T ss_dssp             SCCGGGCEEEEEEEET
T ss_pred             ccCCCcceEEEEeecC
Confidence            9999999999997654

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.28  E-value=0.00079  Score=49.26  Aligned_cols=74  Identities=22%  Similarity=0.348  Sum_probs=50.5

Q ss_pred             ceeEeecCCCeEEEEEeeccCC--ceEEEccC--Cee------cCCC---------CCCceEEeeeecCCCceeeEEEEe
Q psy3718          59 RNQTSRRGEPSVLQCEAKGEKP--IGILWNMN--NKR------LDPK---------SDNRYTIREEILPNGVLSDLSIKR  119 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~~--~~~------i~~~---------~~~~~~~~~~~~~~~~~~~L~i~~  119 (543)
                      ....+++|++++|.|.++|...  -.+.|+|.  |+-      |...         -..|+++..+.  ......|.+.+
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~--s~nt~yL~m~~   85 (117)
T d1jpth1           8 GGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADN--SKNTAYLQMNS   85 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEG--GGTEEEEEECS
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEecc--ccceEEecccc
Confidence            3456789999999999998753  46777753  221      2111         13567666543  23345799999


Q ss_pred             eecCCCccEEEEEec
Q psy3718         120 TERGDSALFTCEIKS  134 (543)
Q Consensus       120 ~~~~D~G~Y~C~a~n  134 (543)
                      ++++|++.|-|....
T Consensus        86 L~~eDTAvYYCAr~~  100 (117)
T d1jpth1          86 LRAEDTAVYYCARDT  100 (117)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             cCCCCceEEEEeecC
Confidence            999999999996543

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.28  E-value=0.00067  Score=49.84  Aligned_cols=75  Identities=17%  Similarity=0.255  Sum_probs=50.7

Q ss_pred             cceeEeecCCCeEEEEEeeccCC--ceEEEccC--Ceec------CCCC---------CCceEEeeeecCCCceeeEEEE
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGEKP--IGILWNMN--NKRL------DPKS---------DNRYTIREEILPNGVLSDLSIK  118 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~~--~~~i------~~~~---------~~~~~~~~~~~~~~~~~~L~i~  118 (543)
                      +....+++|++++|.|.++|...  -.+.|+|-  |+.+      ....         ..|+++..+.  ......|.|.
T Consensus         6 sg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~--s~~t~~L~m~   83 (117)
T d1um5h1           6 SGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDK--SSNTAYLELS   83 (117)
T ss_dssp             CCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEET--TTTEEEEEEC
T ss_pred             ECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEecc--CceeEeeccc
Confidence            34456789999999999998654  46788863  3321      1111         2466665432  2334579999


Q ss_pred             eeecCCCccEEEEEec
Q psy3718         119 RTERGDSALFTCEIKS  134 (543)
Q Consensus       119 ~~~~~D~G~Y~C~a~n  134 (543)
                      +++.+|++.|-|....
T Consensus        84 sL~~eDtAvYYCAr~~   99 (117)
T d1um5h1          84 SLTSEDSAVYYCARSS   99 (117)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             ccCCCcceEEEEeecc
Confidence            9999999999996533

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.26  E-value=0.00048  Score=51.28  Aligned_cols=72  Identities=22%  Similarity=0.403  Sum_probs=47.8

Q ss_pred             eeEeecCCCeEEEEEeeccCC----ceEEEcc--CCeecC------CCC--------CCceEEeeeecCCCceeeEEEEe
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKP----IGILWNM--NNKRLD------PKS--------DNRYTIREEILPNGVLSDLSIKR  119 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~----~~i~W~~--~~~~i~------~~~--------~~~~~~~~~~~~~~~~~~L~i~~  119 (543)
                      ...+++|++++|.|.++|...    --+.|+|  .|+.+.      ...        ..|+++..+.  ......|+|.+
T Consensus         9 ~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~--s~~~~~L~i~s   86 (123)
T d1r0ah1           9 PGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDT--SNNQAFLNMMT   86 (123)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEG--GGTEEEEEECS
T ss_pred             CceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccc--cceeEEcceee
Confidence            345788999999999998542    3567986  333221      111        1355554432  22335799999


Q ss_pred             eecCCCccEEEEEe
Q psy3718         120 TERGDSALFTCEIK  133 (543)
Q Consensus       120 ~~~~D~G~Y~C~a~  133 (543)
                      ++++|++.|-|...
T Consensus        87 l~~eDsAvYyCAr~  100 (123)
T d1r0ah1          87 VETADTAIYYCAQS  100 (123)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccccceEEeeccc
Confidence            99999999999754

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.26  E-value=0.00069  Score=49.71  Aligned_cols=73  Identities=16%  Similarity=0.420  Sum_probs=49.7

Q ss_pred             eeEeecCCCeEEEEEeeccCC--ceEEEcc--CCeec------CCC---------CCCceEEeeeecCCCceeeEEEEee
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKRL------DPK---------SDNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i------~~~---------~~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      ...+++|++++|+|.++|...  -.+.|+|  .|+-+      ...         -..|+++..+.  ......|.|.++
T Consensus         9 ~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~--s~~t~~L~i~~L   86 (117)
T d1iqdb1           9 AEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADT--STNIAYMELSSL   86 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEET--TTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeeccc--ccceEEEeeccc
Confidence            345788999999999998643  4567876  33321      111         13456665442  233357999999


Q ss_pred             ecCCCccEEEEEec
Q psy3718         121 ERGDSALFTCEIKS  134 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n  134 (543)
                      +.+|++.|-|....
T Consensus        87 ~~eDtAvYYCA~~~  100 (117)
T d1iqdb1          87 RSDDTAVYYCAVPD  100 (117)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             CcCcceEEEEeEcC
Confidence            99999999998655

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.25  E-value=0.00034  Score=50.59  Aligned_cols=70  Identities=14%  Similarity=0.173  Sum_probs=43.2

Q ss_pred             CCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEE-eeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718          66 GEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTI-REEILPNGVLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        66 g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      ...++|.|.+.|. |. ..|.|++||..+.......... ....-++|.........+.+.|...|+|.+...
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~   86 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKGI   86 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTTCGGGEEEEEEEG
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCCCCCEEEEEEEeC
Confidence            4578999999995 44 8999999987763211100000 001113454444445556677888999999763

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.24  E-value=0.00081  Score=50.13  Aligned_cols=77  Identities=17%  Similarity=0.241  Sum_probs=51.5

Q ss_pred             eEEeecceeEeecCCCeEEEEEeeccCCceEEEccC--CeecCC------CC--------CCceEEeeeecCCCceeeEE
Q psy3718          53 EFEIKLRNQTSRRGEPSVLQCEAKGEKPIGILWNMN--NKRLDP------KS--------DNRYTIREEILPNGVLSDLS  116 (543)
Q Consensus        53 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~i~~------~~--------~~~~~~~~~~~~~~~~~~L~  116 (543)
                      .+...|..+.+.+|++++|.|...+.....+.|+|-  |+.+..      ..        ..++....     .....|.
T Consensus         3 ~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~-----~~~~~l~   77 (112)
T d1fo0b_           3 LLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATR-----VTDTELR   77 (112)
T ss_dssp             SEEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEE-----EETTEEE
T ss_pred             eEEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceecccccccccccccccccccc-----ccccEEE
Confidence            345667888899999999999987666678999973  332110      00        01222111     1124689


Q ss_pred             EEeeecCCCccEEEEEec
Q psy3718         117 IKRTERGDSALFTCEIKS  134 (543)
Q Consensus       117 i~~~~~~D~G~Y~C~a~n  134 (543)
                      |..++++|++.|.|....
T Consensus        78 l~~~~~~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          78 LQVANMSQGRTLYCTCSA   95 (112)
T ss_dssp             EEEESCCSCEEEEEEEES
T ss_pred             EecCCccCCccEEEEEec
Confidence            999999999999998654

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.24  E-value=0.00053  Score=50.43  Aligned_cols=70  Identities=20%  Similarity=0.344  Sum_probs=47.4

Q ss_pred             eEeecCCCeEEEEEeeccCC--ceEEEcc--CCee------cCCCC---------CCceEEeeeecCCCceeeEEEEeee
Q psy3718          61 QTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKR------LDPKS---------DNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~------i~~~~---------~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      ..+++|++++|.|.++|...  -.+.|+|  .|+.      |....         ..|+++..+.  ......|.|.+++
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~--s~~t~~L~i~~l~   87 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDK--SSSTAFMHLNSLT   87 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEET--TTTEEEEEECSCC
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeecc--CceeeEeeeeecC
Confidence            34678999999999998643  4678886  3332      21111         1355555432  2334579999999


Q ss_pred             cCCCccEEEEE
Q psy3718         122 RGDSALFTCEI  132 (543)
Q Consensus       122 ~~D~G~Y~C~a  132 (543)
                      .+|++.|-|..
T Consensus        88 ~eDtAvYYCAr   98 (115)
T d1f3dh1          88 FEDSAVYYCAN   98 (115)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cCCcEEEEEec
Confidence            99999999954

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.24  E-value=0.00033  Score=51.33  Aligned_cols=67  Identities=21%  Similarity=0.368  Sum_probs=41.0

Q ss_pred             cCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceee---EEEEeeecCCCccEEEEEecc
Q psy3718          65 RGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSD---LSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        65 ~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      ..+.++|.|.+.|. |. ..+.|++||.++........    ....+|....   |.|....-.+...|+|.+...
T Consensus        18 ~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~----~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~   89 (102)
T d1i1ca2          18 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPP----TMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHE   89 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCC----EECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             cCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEccc----EeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeC
Confidence            35678999999985 43 79999999987642111111    1123444333   444433334456799999885

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.23  E-value=0.0007  Score=49.85  Aligned_cols=72  Identities=15%  Similarity=0.230  Sum_probs=49.4

Q ss_pred             eeEeecCCCeEEEEEeeccCCc---eEEEcc--CCeec------CCCC--------CCceEEeeeecCCCceeeEEEEee
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKPI---GILWNM--NNKRL------DPKS--------DNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~~---~i~W~~--~~~~i------~~~~--------~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      ...+++|++++|.|.++|....   .+.|+|  .|+-+      ....        ..|+++..+.  ......|.|.++
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~--s~nt~~L~~~sL   86 (119)
T d1ncwh1           9 PGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDT--SKNQFFLQLNSV   86 (119)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEET--TTTEEEEEECSC
T ss_pred             CcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEeccc--ccceeecccccc
Confidence            3457899999999999997652   467876  34321      1111        2466665442  334457999999


Q ss_pred             ecCCCccEEEEEe
Q psy3718         121 ERGDSALFTCEIK  133 (543)
Q Consensus       121 ~~~D~G~Y~C~a~  133 (543)
                      +.+|++.|-|...
T Consensus        87 ~~eDTAvYYCAr~   99 (119)
T d1ncwh1          87 TTEDTATYYCAGL   99 (119)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccCCceEEEEeEe
Confidence            9999999999643

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.23  E-value=0.0012  Score=48.36  Aligned_cols=72  Identities=18%  Similarity=0.326  Sum_probs=49.1

Q ss_pred             eeEeecCCCeEEEEEeeccCC--ceEEEcc--CCee------cC---------CCCCCceEEeeeecCCCceeeEEEEee
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKR------LD---------PKSDNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~------i~---------~~~~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      ...+++|++++|+|.++|...  -.+.|+|  .|+-      |.         +.-..|+++..+.  ......|.|.++
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~--s~~t~yLq~~~L   86 (117)
T d1jnhb1           9 AELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADR--SSSIVYLQLNSL   86 (117)
T ss_dssp             CEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEET--TTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccC--ccceeeeccccc
Confidence            345688999999999998754  4667876  2221      11         1113467766542  233457999999


Q ss_pred             ecCCCccEEEEEe
Q psy3718         121 ERGDSALFTCEIK  133 (543)
Q Consensus       121 ~~~D~G~Y~C~a~  133 (543)
                      +.+|++.|-|...
T Consensus        87 ~~eDTAvYYCAr~   99 (117)
T d1jnhb1          87 TSEDSAVYSCSRG   99 (117)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeec
Confidence            9999999999653

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.23  E-value=0.00014  Score=52.96  Aligned_cols=30  Identities=10%  Similarity=0.077  Sum_probs=28.4

Q ss_pred             cceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718         512 NDNFTATYTEDIKLPCLTVGVPAPEIIWKT  541 (543)
Q Consensus       512 ~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~  541 (543)
                      ++.+++..|++++|.|.+.|.|.|+|+|+|
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k   39 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFK   39 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEE
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEE
Confidence            477999999999999999999999999987

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.22  E-value=0.0011  Score=48.77  Aligned_cols=73  Identities=21%  Similarity=0.402  Sum_probs=50.1

Q ss_pred             eeEeecCCCeEEEEEeeccCC--ceEEEccC--Cee------cCCC---------CCCceEEeeeecCCCceeeEEEEee
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKP--IGILWNMN--NKR------LDPK---------SDNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~--~~i~W~~~--~~~------i~~~---------~~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      .-.+++|++++|.|.++|...  -.+.|+|-  |+.      |...         -..|+++..+.  ......|.|.++
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~--s~nt~yLqm~sL   86 (119)
T d1rz7h1           9 AEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADT--STDTGYLELSSL   86 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEET--TTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEeccc--CceEEEeeeecc
Confidence            345689999999999998654  46778752  221      1111         12467665542  334457999999


Q ss_pred             ecCCCccEEEEEec
Q psy3718         121 ERGDSALFTCEIKS  134 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n  134 (543)
                      +.+|++.|-|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (119)
T d1rz7h1          87 RSEDTAVYYCAADP  100 (119)
T ss_dssp             CGGGCEEEEEEECT
T ss_pred             CcccceEEEEeecC
Confidence            99999999997654

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.21  E-value=0.00092  Score=48.72  Aligned_cols=72  Identities=22%  Similarity=0.339  Sum_probs=49.2

Q ss_pred             eeEeecCCCeEEEEEeeccCC--ceEEEccC--Cee------cCCCC---------CCceEEeeeecCCCceeeEEEEee
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKP--IGILWNMN--NKR------LDPKS---------DNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~--~~i~W~~~--~~~------i~~~~---------~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      ...+++|++++|.|.++|...  -.+.|+|-  |+-      |....         ..|+++..+.  ....-.|.|.++
T Consensus         9 ~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~--s~nt~~L~~~~L   86 (114)
T d1indh1           9 GDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDN--AQNNLYLQLNSL   86 (114)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEET--TTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccC--ccceeeeeeeee
Confidence            345789999999999998754  46678762  321      22111         2466666542  233357999999


Q ss_pred             ecCCCccEEEEEe
Q psy3718         121 ERGDSALFTCEIK  133 (543)
Q Consensus       121 ~~~D~G~Y~C~a~  133 (543)
                      +.+|++.|-|...
T Consensus        87 ~~eDtAvYYCA~~   99 (114)
T d1indh1          87 RSEDTALYFCASH   99 (114)
T ss_dssp             CGGGCEEEEEECG
T ss_pred             ccCcccEEEECCC
Confidence            9999999999643

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.0001  Score=51.72  Aligned_cols=42  Identities=12%  Similarity=-0.033  Sum_probs=29.6

Q ss_pred             EEeecCCCeEEecCceEEEec----CCeEEEEEEecCCCCCCCceEEE
Q psy3718           5 FFYRGFNPRILLGRVLLPIGE----SSFHFDPELLNPSFNGFPPLLLS   48 (543)
Q Consensus         5 ~~~~~~~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~~s~~l~v   48 (543)
                      .|++ ++..+...++.|.|.+    |+|.|+|.|.|..+.. .+.|.|
T Consensus        35 ~~~~-~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~~s~~S~-~v~l~V   80 (82)
T d1f2qa1          35 KWFH-NGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNESE-PVYLEV   80 (82)
T ss_dssp             EEEE-TTEECSCCSSEEEECSCCGGGCEEEEEECTTSSCCC-CEEEEE
T ss_pred             eeee-eeeeeecccceeEECCCChhhCCcEEEEecCCCCcc-cEEEEE
Confidence            3444 3445556678999999    9999999999864432 356666

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.20  E-value=0.00065  Score=49.58  Aligned_cols=80  Identities=16%  Similarity=0.288  Sum_probs=42.7

Q ss_pred             CCeE-EeecceeEeecCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC--C
Q psy3718          51 PPEF-EIKLRNQTSRRGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD--S  125 (543)
Q Consensus        51 ~p~~-~~~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D--~  125 (543)
                      ||.+ ...|.... ..++.++|.|.+.|. |. ..|.|.+++.......   ..   ....+|....-.+..+..+|  .
T Consensus         5 ~PsV~~l~p~~~~-~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~---~~---~~~~~g~ys~~S~L~v~~~~w~~   77 (102)
T d1mjuh2           5 APSVYPLAPVCGD-TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHT---FP---AVLQSDLYTLSSSVTVTSSTWPS   77 (102)
T ss_dssp             CCEEEEECCCC-------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE---CC---CEEETTEEEEEEEEEECTTTTTT
T ss_pred             CCEEEEECCCccc-cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEe---cc---cccCCCCEEEEEEEEEehhHcCC
Confidence            4544 34443322 457899999999994 43 7999988774321111   10   11123433333334444444  6


Q ss_pred             ccEEEEEecccc
Q psy3718         126 ALFTCEIKSQKI  137 (543)
Q Consensus       126 G~Y~C~a~n~~~  137 (543)
                      +.|+|.+....+
T Consensus        78 ~~ytC~V~H~~~   89 (102)
T d1mjuh2          78 QSITCNVAHPAS   89 (102)
T ss_dssp             SCCEEEEEEGGG
T ss_pred             ceEEEEEEECCC
Confidence            789999998543

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00011  Score=52.85  Aligned_cols=30  Identities=27%  Similarity=0.566  Sum_probs=27.9

Q ss_pred             cceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718         512 NDNFTATYTEDIKLPCLTVGVPAPEIIWKT  541 (543)
Q Consensus       512 ~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~  541 (543)
                      |..+++..|++++|.|.+.|.|.|.++|+|
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k   32 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVK   32 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEE
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEE
Confidence            456889999999999999999999999997

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.19  E-value=0.00039  Score=51.40  Aligned_cols=82  Identities=12%  Similarity=0.127  Sum_probs=51.2

Q ss_pred             CCCeEEe-ecceeEeecCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCc
Q psy3718          50 APPEFEI-KLRNQTSRRGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSA  126 (543)
Q Consensus        50 ~~p~~~~-~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G  126 (543)
                      .+|.+.+ .|.......+..++|.|.+.|. |. ..|.|.+||..+.....  .  ......+|.........+..+|-|
T Consensus         7 ~~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~--~--~~~~~~~gt~~~~S~L~v~~~~w~   82 (107)
T d1hxmb2           7 VSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQ--E--GNTMKTNDTYMKFSWLTVPEKSLD   82 (107)
T ss_dssp             CSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCE--E--CCCEECSSSEEEEEEEEECTGGGG
T ss_pred             CCCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEE--c--cceecCCCeEEEEEEEEEecccCC
Confidence            3555444 3445556778899999999984 43 79999999988753211  1  111113444444444555666644


Q ss_pred             -cEEEEEecc
Q psy3718         127 -LFTCEIKSQ  135 (543)
Q Consensus       127 -~Y~C~a~n~  135 (543)
                       .|+|.+...
T Consensus        83 ~~ytC~V~H~   92 (107)
T d1hxmb2          83 KEHRCIVRHE   92 (107)
T ss_dssp             SCEEEEEEET
T ss_pred             CeEEEEEEEC
Confidence             699999875

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.18  E-value=0.00095  Score=49.54  Aligned_cols=72  Identities=17%  Similarity=0.313  Sum_probs=49.3

Q ss_pred             eEeecCCCeEEEEEeeccCC--ceEEEccC--Ceec------CC---------CCCCceEEeeeecCCCceeeEEEEeee
Q psy3718          61 QTSRRGEPSVLQCEAKGEKP--IGILWNMN--NKRL------DP---------KSDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~--~~i~W~~~--~~~i------~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      -.+++|+.++|.|.++|...  -.+.|+|.  |+-+      ..         .-..|++|..+.  ....-.|+|.+++
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~--s~~t~~Lqm~sL~   87 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDD--LEDFVYLQMHKMR   87 (125)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEET--TTTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccC--ccceEeeeeeccC
Confidence            45689999999999998643  45677752  2221      11         113467776542  2344689999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      .+|++.|-|....
T Consensus        88 ~eDTAvYYCAr~~  100 (125)
T d1op3h1          88 VEDTAIYYCARKG  100 (125)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CccceeEeEeecc
Confidence            9999999997654

>d2qfra1 b.1.12.1 (A:9-120) Purple acid phosphatase, N-terminal domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Purple acid phosphatase, N-terminal domain
family: Purple acid phosphatase, N-terminal domain
domain: Purple acid phosphatase, N-terminal domain
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.18  E-value=0.0032  Score=46.47  Aligned_cols=87  Identities=20%  Similarity=0.266  Sum_probs=54.1

Q ss_pred             CCeeeEEEecC--CCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeee-----ccCCceeEEEECCCCCCC
Q psy3718         251 PPTHIKVEATD--QNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFS-----KEEGKEHHLTLSSLKTYT  323 (543)
Q Consensus       251 ~P~~~~~~~~~--~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~L~p~t  323 (543)
                      +|..+++....  ++++.|+|.-....  .    .-.|+|....+............     ...+..++..|++|+|++
T Consensus        18 ~P~qvhlt~~~~~~tsm~VsW~T~~~~--~----~~~V~yg~~~~~~~~~a~~~~~~~~~~~~~~~~~h~v~Lt~L~P~T   91 (112)
T d2qfra1          18 APQQVHITQGDLVGRAMIISWVTMDEP--G----SSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNT   91 (112)
T ss_dssp             CCEEEEEEECSSSSSCEEEEEEESSSC--C----CCEEEEEESSSCCCEEEECEEECCBCSSCBCCEEEEEEECSCCTTC
T ss_pred             CCccEEEeCcCCCCCEEEEEEECCCCC--C----CcEEEEEECCCCCCcEEEEEEEEEEecccCCcEEEEEEECCCCCCC
Confidence            58888888653  57999999875432  2    23455655444322221111100     012345789999999999


Q ss_pred             EEEEEEEEEeCCCCCCCCcceeeecc
Q psy3718         324 QYSVVVQALNKLGPGPMSEEVKQYTA  349 (543)
Q Consensus       324 ~Y~~~V~a~n~~G~s~~s~~~~~~t~  349 (543)
                      .|.++|      |.+.+|....|+|.
T Consensus        92 ~Y~YrV------G~~~~S~~~~F~T~  111 (112)
T d2qfra1          92 KYYYEV------GLRNTTRRFSFITP  111 (112)
T ss_dssp             EEEEEE------CCSSSCEEEEEECC
T ss_pred             EEEEEE------CCCCceeeEEEEcC
Confidence            999998      23347888888874

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.18  E-value=8.5e-05  Score=54.80  Aligned_cols=70  Identities=13%  Similarity=0.229  Sum_probs=43.0

Q ss_pred             cCCCeEEEEEeec-cCC-ceEEEccCCeecCCCCCCceEEeeeecCCCce---eeEEEEeeecCCCccEEEEEecccce
Q psy3718          65 RGEPSVLQCEAKG-EKP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVL---SDLSIKRTERGDSALFTCEIKSQKIS  138 (543)
Q Consensus        65 ~g~~~~l~C~~~g-~p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~D~G~Y~C~a~n~~~s  138 (543)
                      .++.++|.|.+.| .|. .+|.|++||+.+....... .   ....++..   +.|.|....-.+...|+|.+.....+
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~-~---~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~   93 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTT-K---PSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET   93 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCC-C---CBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEec-c---ccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCc
Confidence            4667899999998 454 6999999999885321111 1   11123322   34444443334556899999986443

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.18  E-value=0.00075  Score=50.11  Aligned_cols=74  Identities=20%  Similarity=0.340  Sum_probs=49.3

Q ss_pred             ceeEeecCCCeEEEEEeeccCC--ceEEEcc--CCeec------CCCC---------CCceEEeeeecCCCceeeEEEEe
Q psy3718          59 RNQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKRL------DPKS---------DNRYTIREEILPNGVLSDLSIKR  119 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i------~~~~---------~~~~~~~~~~~~~~~~~~L~i~~  119 (543)
                      ....+++|+.++|.|.++|...  -.+.|+|  .|+.+      ....         ..|+++..+.  ......|.|.+
T Consensus         8 g~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~--s~~t~~L~i~~   85 (121)
T d1j05b_           8 GAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADT--SSNTAYLQLTS   85 (121)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEG--GGTEEEEEECS
T ss_pred             CCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeec--CCceeeecccc
Confidence            3455789999999999998643  4678876  33322      1111         1355554332  22235799999


Q ss_pred             eecCCCccEEEEEec
Q psy3718         120 TERGDSALFTCEIKS  134 (543)
Q Consensus       120 ~~~~D~G~Y~C~a~n  134 (543)
                      ++.+|++.|-|....
T Consensus        86 L~~eDtAvYYCAr~~  100 (121)
T d1j05b_          86 LTSEDTAVYYCAPFG  100 (121)
T ss_dssp             CCGGGCEEEEEEEEB
T ss_pred             cCcCcceEEEeEeec
Confidence            999999999997543

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.17  E-value=0.0016  Score=48.50  Aligned_cols=73  Identities=19%  Similarity=0.373  Sum_probs=50.4

Q ss_pred             eeEeecCCCeEEEEEeeccCC--ceEEEcc--CCeec---------------CCCCCCceEEeeeecCCCceeeEEEEee
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKRL---------------DPKSDNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i---------------~~~~~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      ...+++|++++|+|.++|...  -.+.|+|  .|+-+               .+.-..|+++..+.  ....-.|.+.++
T Consensus         9 ~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~--s~~t~yL~~~sL   86 (128)
T d2nxyd1           9 AEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADK--STSTVYLELRNL   86 (128)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEET--TTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecC--CCceEEeeeeec
Confidence            345789999999999998754  3556754  22211               11123577776543  233457999999


Q ss_pred             ecCCCccEEEEEec
Q psy3718         121 ERGDSALFTCEIKS  134 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n  134 (543)
                      +.+|++.|-|....
T Consensus        87 ~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          87 RSDDTAVYFCAGVY  100 (128)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             cccCceEEEEeEEe
Confidence            99999999998765

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00012  Score=52.41  Aligned_cols=28  Identities=11%  Similarity=-0.006  Sum_probs=23.1

Q ss_pred             eEEEec----CCeEEEEEEecCCCCCCCceEEEeC
Q psy3718          20 LLPIGE----SSFHFDPELLNPSFNGFPPLLLSSA   50 (543)
Q Consensus        20 ~L~I~~----D~G~Y~C~a~n~~g~~~s~~l~v~~   50 (543)
                      +|.|.+    |+|.|+|+|.|.   ..++.|.|+.
T Consensus        58 ~L~I~~v~~~D~G~Y~C~a~n~---~~~a~l~V~~   89 (90)
T d1x44a1          58 ILIIEGATKADAAEYSVMTTGG---QSSAKLSVDL   89 (90)
T ss_dssp             EEEEEEECTTTCSEEEEEETTE---EEEEEEEEEC
T ss_pred             EEEECccccccCEEEEEEEecc---eEEEEEEEEE
Confidence            899999    999999999884   3467887754

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.17  E-value=0.00022  Score=54.72  Aligned_cols=86  Identities=19%  Similarity=0.319  Sum_probs=49.1

Q ss_pred             CCCeEEe-ecceeEeecCCCeEEEEEeecc-C-CceEEEccCCeecCCCCCC--ceEEeeeecCCCce---eeEEEEeee
Q psy3718          50 APPEFEI-KLRNQTSRRGEPSVLQCEAKGE-K-PIGILWNMNNKRLDPKSDN--RYTIREEILPNGVL---SDLSIKRTE  121 (543)
Q Consensus        50 ~~p~~~~-~~~~~~v~~g~~~~l~C~~~g~-p-~~~i~W~~~~~~i~~~~~~--~~~~~~~~~~~~~~---~~L~i~~~~  121 (543)
                      .||.+.+ .|.......+..++|.|.+.|. | ...|.|++||+.+......  ...-......++..   +.|.|....
T Consensus         3 ~PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~   82 (127)
T d1ogae2           3 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATF   82 (127)
T ss_dssp             BCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHH
T ss_pred             cCCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHH
Confidence            4676655 3444455667889999999985 4 3799999999887422100  00000000112222   345554333


Q ss_pred             cCCCc-cEEEEEecc
Q psy3718         122 RGDSA-LFTCEIKSQ  135 (543)
Q Consensus       122 ~~D~G-~Y~C~a~n~  135 (543)
                      =.+.| .|+|.+...
T Consensus        83 W~~~g~~ytC~V~H~   97 (127)
T d1ogae2          83 WQNPRNHFRCQVQFY   97 (127)
T ss_dssp             HTCTTCEEEEEEEEC
T ss_pred             hCCCCCEEEEEEEEC
Confidence            24556 699999875

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.15  E-value=0.00029  Score=52.21  Aligned_cols=72  Identities=17%  Similarity=0.202  Sum_probs=48.8

Q ss_pred             eeEeecCCCeEEEEEeeccCC----ceEEEccC--Ceec------CCCC--------CCceEEeeeecCCCceeeEEEEe
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKP----IGILWNMN--NKRL------DPKS--------DNRYTIREEILPNGVLSDLSIKR  119 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~----~~i~W~~~--~~~i------~~~~--------~~~~~~~~~~~~~~~~~~L~i~~  119 (543)
                      ...+++|++++|.|.++|...    --+.|+|-  |+.+      ....        ..|+++..+.  ......|.|.+
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~--s~n~~~L~~~s   86 (120)
T d1ai1h1           9 PAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDT--SLNKFFIQLIS   86 (120)
T ss_dssp             CSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEET--TTTEEEEEESS
T ss_pred             CceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceecccc--ccceeecceee
Confidence            345789999999999998642    35789863  3322      1111        1466665442  23345799999


Q ss_pred             eecCCCccEEEEEe
Q psy3718         120 TERGDSALFTCEIK  133 (543)
Q Consensus       120 ~~~~D~G~Y~C~a~  133 (543)
                      ++++|++.|-|...
T Consensus        87 L~~eDtAvYYCAr~  100 (120)
T d1ai1h1          87 VTNEDTAMYYCSRE  100 (120)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             eeccceeEEEEEec
Confidence            99999999999643

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=9e-05  Score=57.39  Aligned_cols=32  Identities=25%  Similarity=0.556  Sum_probs=29.6

Q ss_pred             EecceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718         510 SFNDNFTATYTEDIKLPCLTVGVPAPEIIWKT  541 (543)
Q Consensus       510 ~~~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~  541 (543)
                      ..+..+.+..|++++|.|.+.|.|.|.|+|+|
T Consensus        14 ~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~   45 (130)
T d1gxea_          14 RIPDTIVVVAGNKLRLDVPISGDPAPTVIWQK   45 (130)
T ss_dssp             CCCCEEEESSSSCCCCEEECCSBSCCEEEEEE
T ss_pred             CCCCCEEEEcCCeEEEEEEEEEecCCeEEEee
Confidence            45678999999999999999999999999997

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=97.14  E-value=0.00021  Score=50.33  Aligned_cols=43  Identities=12%  Similarity=-0.115  Sum_probs=28.6

Q ss_pred             EEeecCCCeEEecCceEEEec----CCeEEEEEEecCCCCCCCceEEE
Q psy3718           5 FFYRGFNPRILLGRVLLPIGE----SSFHFDPELLNPSFNGFPPLLLS   48 (543)
Q Consensus         5 ~~~~~~~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~~s~~l~v   48 (543)
                      .|+..++......+++|.|.+    |+|.|+|.|.|..++ ..+.|.|
T Consensus        38 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~s~~S-~~v~L~V   84 (84)
T d1fnla1          38 TQWFHNESLISSQASSYFIDAATVNDSGEYRCQTNLSTLS-DPVQLEV   84 (84)
T ss_dssp             CEEEETTEEEESSCSEEEESSCCGGGCEEEEEECSSSCCC-CCEEEEE
T ss_pred             EEEeeeceeeeecceeeEecCCcccCCEEEEEEccCCCcc-ccEEEEC
Confidence            333334444456677999999    999999999885432 2355554

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.14  E-value=0.0011  Score=48.75  Aligned_cols=73  Identities=16%  Similarity=0.344  Sum_probs=49.3

Q ss_pred             ceeEeecCCCeEEEEEeeccCC--ceEEEcc--CCee------cCCCC---------CCceEEeeeecCCCceeeEEEEe
Q psy3718          59 RNQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKR------LDPKS---------DNRYTIREEILPNGVLSDLSIKR  119 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~------i~~~~---------~~~~~~~~~~~~~~~~~~L~i~~  119 (543)
                      ....+++|++++|.|.++|...  -.+.|+|  .|+-      |....         ..|+++..+..  .....|.|.+
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s--~nt~~L~~~s   85 (119)
T d1eapb1           8 GTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQS--SSTAYMQLNS   85 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGG--GTEEEEEECS
T ss_pred             CCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccC--cceEEeeeec
Confidence            3455689999999999998754  4677886  2332      22211         23666654322  2235799999


Q ss_pred             eecCCCccEEEEEe
Q psy3718         120 TERGDSALFTCEIK  133 (543)
Q Consensus       120 ~~~~D~G~Y~C~a~  133 (543)
                      ++.+|++.|-|...
T Consensus        86 L~~eDTAvYYCAr~   99 (119)
T d1eapb1          86 LTSEDSAVYFCKRS   99 (119)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             ccCCcceEEEEEEe
Confidence            99999999999543

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.13  E-value=0.00097  Score=48.62  Aligned_cols=74  Identities=20%  Similarity=0.331  Sum_probs=50.6

Q ss_pred             ecceeEeecCCCeEEEEEeeccCC--ceEEEcc--CCee------cCCCC---------CCceEEeeeecCCCceeeEEE
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKR------LDPKS---------DNRYTIREEILPNGVLSDLSI  117 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~------i~~~~---------~~~~~~~~~~~~~~~~~~L~i  117 (543)
                      ++....+++|++++|+|.++|...  --+.|+|  .|+-      |....         ..|+++..+.  ......|.+
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~--s~~tvyL~~   83 (116)
T d1mjuh1           6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDT--SSSTAYMQL   83 (116)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEET--TTTEEEEEE
T ss_pred             eECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEeccc--ccceeEecc
Confidence            344567889999999999998654  4667876  2321      11111         2466665442  233457999


Q ss_pred             EeeecCCCccEEEEE
Q psy3718         118 KRTERGDSALFTCEI  132 (543)
Q Consensus       118 ~~~~~~D~G~Y~C~a  132 (543)
                      .+++.+|++.|-|..
T Consensus        84 ~sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          84 SSLTSDDSAVYYCAN   98 (116)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCCCCceEEEEcc
Confidence            999999999999964

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00029  Score=51.74  Aligned_cols=37  Identities=14%  Similarity=-0.016  Sum_probs=29.8

Q ss_pred             ceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCCeEE
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPPEFE   55 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p~~~   55 (543)
                      .+|.|..    |.|.|+|.|.|..|.. .+..+.+..|+.+.
T Consensus        60 s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~~~~~s~p~~L~  101 (103)
T d1iama1          60 VTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPYQLQ  101 (103)
T ss_dssp             EEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECE
T ss_pred             EEEEEeeehhHCCCEEEEEEEeCCCCccCeEeeeEcCCCEEE
Confidence            4788887    8889999999999985 56788887776653

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.13  E-value=0.00072  Score=51.14  Aligned_cols=73  Identities=21%  Similarity=0.347  Sum_probs=49.3

Q ss_pred             eEeecCCCeEEEEEeeccCC----ceEEEccC--CeecC------CC--------CCCceEEeeeecCCCceeeEEEEee
Q psy3718          61 QTSRRGEPSVLQCEAKGEKP----IGILWNMN--NKRLD------PK--------SDNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~----~~i~W~~~--~~~i~------~~--------~~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      ..+++|++++|.|.++|...    .-+.|+|-  |+.+.      ..        -..|+++..+.  ....-.|+|.++
T Consensus        10 ~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~--s~~~~~L~i~~l   87 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDT--SKNQVVLVMTRV   87 (132)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEET--TTTEEEEEECSC
T ss_pred             eeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccc--cccEEEcccccC
Confidence            45788999999999998542    35789862  33220      00        12456654432  223457999999


Q ss_pred             ecCCCccEEEEEecc
Q psy3718         121 ERGDSALFTCEIKSQ  135 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n~  135 (543)
                      +++|++.|-|.....
T Consensus        88 ~~eDtAvYYCAr~~~  102 (132)
T d1tjgh1          88 SPVDTATYFCAHRRG  102 (132)
T ss_dssp             CGGGCEEEEEEEECC
T ss_pred             CcccceEEEEEEecC
Confidence            999999999987653

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00015  Score=53.18  Aligned_cols=38  Identities=21%  Similarity=0.406  Sum_probs=32.9

Q ss_pred             CceEEEecceEEEeecCceeecceecCCCCC-eeeEEec
Q psy3718         505 PARIASFNDNFTATYTEDIKLPCLTVGVPAP-EIIWKTF  542 (543)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~~~l~c~~~g~p~p-~~~w~~~  542 (543)
                      |+.|...+....+..|+.+.|.|.+.|.|.| .++|+|.
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~   40 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKI   40 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEEC
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEec
Confidence            4566667778889999999999999999999 7999974

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.13  E-value=0.0016  Score=48.77  Aligned_cols=72  Identities=18%  Similarity=0.301  Sum_probs=48.5

Q ss_pred             eEeecCCCeEEEEEeeccCC----ceEEEcc--CCeec------CCC--------CCCceEEeeeecCCCceeeEEEEee
Q psy3718          61 QTSRRGEPSVLQCEAKGEKP----IGILWNM--NNKRL------DPK--------SDNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~----~~i~W~~--~~~~i------~~~--------~~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      ..+++|++++|.|.++|...    -.+.|+|  .|+.+      ...        -..|+++..+.  ......|.|.++
T Consensus        10 ~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~--s~~t~~L~i~~l   87 (126)
T d1etzb1          10 GILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDT--SSNQVFLKITSV   87 (126)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEET--TTTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEeccc--CCcEEEcceecc
Confidence            45788999999999997532    3567885  23322      111        12466665442  233457999999


Q ss_pred             ecCCCccEEEEEec
Q psy3718         121 ERGDSALFTCEIKS  134 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n  134 (543)
                      +++|++.|-|....
T Consensus        88 ~~eDtAvYyCAr~~  101 (126)
T d1etzb1          88 DTSDTATYHCARRT  101 (126)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             cccccceEEEEEec
Confidence            99999999998644

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.13  E-value=0.0015  Score=47.98  Aligned_cols=73  Identities=19%  Similarity=0.319  Sum_probs=49.8

Q ss_pred             eeEeecCCCeEEEEEeeccCC--ceEEEcc--CCee------cCCC---------CCCceEEeeeecCCCceeeEEEEee
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKR------LDPK---------SDNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~------i~~~---------~~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      .-.+++|++++|.|.++|...  -.+.|+|  .|+-      |...         -..|+++..+.  ....-.|.|.++
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~--s~nt~~L~~~sL   86 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDN--AKNSLYLQMSKV   86 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECS--SSCEEEEEECSC
T ss_pred             CceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecC--ccceeecccccc
Confidence            345789999999999999754  3567775  2321      1111         12466665442  233457999999


Q ss_pred             ecCCCccEEEEEec
Q psy3718         121 ERGDSALFTCEIKS  134 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n  134 (543)
                      +.+|++.|-|....
T Consensus        87 ~~eDtAvYYCAr~~  100 (118)
T d2fbjh1          87 RSEDTALYYCARLH  100 (118)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CCCcceEEEeeEec
Confidence            99999999997654

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.10  E-value=0.00095  Score=48.04  Aligned_cols=68  Identities=21%  Similarity=0.336  Sum_probs=40.9

Q ss_pred             cCCCeEEEEEeeccCC--ceEEEcc--CCeec------CCC---------CCCceEEeeeecCCCceeeEEEEeeecCCC
Q psy3718          65 RGEPSVLQCEAKGEKP--IGILWNM--NNKRL------DPK---------SDNRYTIREEILPNGVLSDLSIKRTERGDS  125 (543)
Q Consensus        65 ~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i------~~~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~  125 (543)
                      +|++++|+|.++|...  --+.|+|  .|+.+      ...         -..|+++..+.  ......|+|.+++++|+
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~--s~~t~~L~~~sL~~eDT   78 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDK--PSSTAYMQLSSLTSEDS   78 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC------CEEEEEECCC---CC
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccc--cccEEEeeeeecccccc
Confidence            5899999999998654  4678885  33322      111         13566665432  23345799999999999


Q ss_pred             ccEEEEEec
Q psy3718         126 ALFTCEIKS  134 (543)
Q Consensus       126 G~Y~C~a~n  134 (543)
                      +.|-|....
T Consensus        79 AvYYCAr~~   87 (103)
T d1oari_          79 AVYYCARMW   87 (103)
T ss_dssp             SEEEEEEEE
T ss_pred             EEEEeEEEC
Confidence            999997644

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.10  E-value=0.0014  Score=48.53  Aligned_cols=74  Identities=19%  Similarity=0.297  Sum_probs=50.1

Q ss_pred             cceeEeecCCCeEEEEEeeccCC--ceEEEcc--CCee------cCCC---------CCCceEEeeeecCCCceeeEEEE
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKR------LDPK---------SDNRYTIREEILPNGVLSDLSIK  118 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~------i~~~---------~~~~~~~~~~~~~~~~~~~L~i~  118 (543)
                      +....+++|++++|.|.++|...  -.+.|+|  .|+-      |...         -..|+++..+.  ......|.+.
T Consensus         7 sg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~--s~~t~yL~~~   84 (124)
T d2b1hh1           7 SGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADR--STNTAHLQWS   84 (124)
T ss_dssp             CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEET--TTTEEEEEES
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecC--CCcEEEEeee
Confidence            34456789999999999998754  3567775  2221      1111         13566666542  3344689999


Q ss_pred             eeecCCCccEEEEEe
Q psy3718         119 RTERGDSALFTCEIK  133 (543)
Q Consensus       119 ~~~~~D~G~Y~C~a~  133 (543)
                      +++++|++.|-|...
T Consensus        85 ~L~~eDTA~YYCAR~   99 (124)
T d2b1hh1          85 SLKPSDTALYYCARL   99 (124)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccccccceEEEEeec
Confidence            999999999999543

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.10  E-value=0.0019  Score=47.47  Aligned_cols=72  Identities=18%  Similarity=0.245  Sum_probs=49.0

Q ss_pred             eEeecCCCeEEEEEeeccCC--ceEEEcc--CCeec------CC-----------CCCCceEEeeeecCCCceeeEEEEe
Q psy3718          61 QTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKRL------DP-----------KSDNRYTIREEILPNGVLSDLSIKR  119 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i------~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~  119 (543)
                      ..+++|++++|.|.++|...  -.+.|+|  .|+-+      ..           .-..|+++..+.  ....-.|.|.+
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~--s~n~~~L~~~~   87 (120)
T d1dlfh_          10 GLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDD--SKRRVYLQMNT   87 (120)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEET--TTTEEEEEECS
T ss_pred             ceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeeccc--ccceeccceee
Confidence            45788999999999998643  5677876  34321      11           112366665432  23345799999


Q ss_pred             eecCCCccEEEEEec
Q psy3718         120 TERGDSALFTCEIKS  134 (543)
Q Consensus       120 ~~~~D~G~Y~C~a~n  134 (543)
                      ++.+|++.|-|....
T Consensus        88 L~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          88 LRAEDTGIYYCTGIY  102 (120)
T ss_dssp             CCGGGCEEEEEEEEB
T ss_pred             ccCCCceEEEeeEec
Confidence            999999999996544

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.09  E-value=0.0014  Score=48.73  Aligned_cols=73  Identities=15%  Similarity=0.284  Sum_probs=50.3

Q ss_pred             cceeEeecCCCeEEEEEeeccCC--ceEEEcc--CCee------cCCCC---------CCceEEeeeecCCCceeeEEEE
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKR------LDPKS---------DNRYTIREEILPNGVLSDLSIK  118 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~------i~~~~---------~~~~~~~~~~~~~~~~~~L~i~  118 (543)
                      +....+++|+++.|.|.++|...  -.+.|+|  .|+-      |....         ..|+++..+.  ......|.+.
T Consensus         6 sG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~--s~nt~yL~m~   83 (126)
T d1lmka1           6 SGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADT--SSNIAYMQLS   83 (126)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEET--TTTEEEEEEC
T ss_pred             ECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecC--CccEEEeeec
Confidence            34456789999999999999754  4677876  2322      11111         2566665432  3344689999


Q ss_pred             eeecCCCccEEEEE
Q psy3718         119 RTERGDSALFTCEI  132 (543)
Q Consensus       119 ~~~~~D~G~Y~C~a  132 (543)
                      +++.+|++.|-|..
T Consensus        84 ~L~~eDTAvYYCAr   97 (126)
T d1lmka1          84 SLTSEDSAVYYCAR   97 (126)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEee
Confidence            99999999999964

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.08  E-value=0.00095  Score=49.77  Aligned_cols=71  Identities=17%  Similarity=0.271  Sum_probs=48.7

Q ss_pred             eEeecCCCeEEEEEeeccCC---ceEEEcc--CCeec------C--------CCCCCceEEeeeecCCCceeeEEEEeee
Q psy3718          61 QTSRRGEPSVLQCEAKGEKP---IGILWNM--NNKRL------D--------PKSDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~---~~i~W~~--~~~~i------~--------~~~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      -.+++|++++|.|.++|...   -.+.|+|  .|+.+      .        +.-..|+++..+.  ......|.|.+++
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~--s~nt~yL~l~~l~   87 (127)
T d3cx5j1          10 GLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDT--SKNQFFLKLNSVT   87 (127)
T ss_dssp             SEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEET--TTTEEEEEECSCC
T ss_pred             ceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeeccc--ccceeecceeccc
Confidence            45689999999999998754   3578986  34332      1        1112355555432  2334579999999


Q ss_pred             cCCCccEEEEEe
Q psy3718         122 RGDSALFTCEIK  133 (543)
Q Consensus       122 ~~D~G~Y~C~a~  133 (543)
                      ++|++.|.|...
T Consensus        88 ~eDtAvYyCAr~   99 (127)
T d3cx5j1          88 TEDTATYYCARS   99 (127)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEEeeee
Confidence            999999999754

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.08  E-value=0.0011  Score=49.45  Aligned_cols=72  Identities=19%  Similarity=0.316  Sum_probs=48.1

Q ss_pred             eEeecCCCeEEEEEeeccCC--ceEEEcc--CCeec------CCCC---------CCceEEeeeecCCCceeeEEEEeee
Q psy3718          61 QTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKRL------DPKS---------DNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i------~~~~---------~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      --+++|+++.|+|.++|...  -.+.|+|  .|+-+      ....         ..|+++..+.  ......|.|.+++
T Consensus         9 ~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~--s~~~~~L~i~~l~   86 (126)
T d1rjca1           9 GSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDN--AKNTLYLQMNSLK   86 (126)
T ss_dssp             EEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC----CEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecC--CceEEEEEEeccC
Confidence            45689999999999998643  4677876  33322      1111         2466665442  2333579999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      .+|++.|-|....
T Consensus        87 ~eDTAvYYCAr~~   99 (126)
T d1rjca1          87 PEDTAMYYCAADT   99 (126)
T ss_dssp             GGGCEEEEEEECC
T ss_pred             cccCceeEEEeec
Confidence            9999999997655

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.07  E-value=0.0012  Score=48.83  Aligned_cols=73  Identities=21%  Similarity=0.340  Sum_probs=49.5

Q ss_pred             eeEeecCCCeEEEEEeeccCC--ceEEEcc--CCee------cCCCC---------CCceEEeeeecCCCceeeEEEEee
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKR------LDPKS---------DNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~------i~~~~---------~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      ...+++|+.++|.|.++|...  -.+.|+|  .|+-      |....         ..|+++..+..  .....|.|.++
T Consensus         9 ~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s--~nt~~L~i~~L   86 (123)
T d1mqkh_           9 GDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNA--KNTLYLQMSSL   86 (123)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGG--GTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCc--ccccccceeee
Confidence            345789999999999998653  4567876  2321      22111         24666654432  23357999999


Q ss_pred             ecCCCccEEEEEec
Q psy3718         121 ERGDSALFTCEIKS  134 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n  134 (543)
                      +.+|++.|-|....
T Consensus        87 ~~eDtAvYYCAr~~  100 (123)
T d1mqkh_          87 KSEDTAMYYCVRHE  100 (123)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccCcccceeEEecC
Confidence            99999999997654

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.07  E-value=0.0018  Score=48.39  Aligned_cols=73  Identities=21%  Similarity=0.343  Sum_probs=50.0

Q ss_pred             eeEeecCCCeEEEEEeeccCC--ceEEEcc--CCee------cCCCC---------CCceEEeeeecCCCceeeEEEEee
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKR------LDPKS---------DNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~------i~~~~---------~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      ...+++|++++|+|.++|...  -.+.|+|  .|+-      |....         ..|+++..+.  ......|.|.++
T Consensus         9 ~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~--s~~t~yL~i~~L   86 (135)
T d1ieha_           9 GGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDN--AKNTLYLQMNSL   86 (135)
T ss_dssp             CCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECT--TTCCEEEEEESC
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccC--CCceeEecEeee
Confidence            345789999999999998643  4677875  2322      21111         2566665442  233457999999


Q ss_pred             ecCCCccEEEEEec
Q psy3718         121 ERGDSALFTCEIKS  134 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n  134 (543)
                      +.+|++.|-|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (135)
T d1ieha_          87 KSEDTAVYYCAKYS  100 (135)
T ss_dssp             CSSSCEEEEEEEBS
T ss_pred             CcccceeeEEEEec
Confidence            99999999997654

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.07  E-value=0.0013  Score=48.82  Aligned_cols=74  Identities=18%  Similarity=0.417  Sum_probs=50.4

Q ss_pred             ecceeEeecCCCeEEEEEeeccCC--ceEEEcc--CCee------cCCCC---------CCceEEeeeecCCCceeeEEE
Q psy3718          57 KLRNQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKR------LDPKS---------DNRYTIREEILPNGVLSDLSI  117 (543)
Q Consensus        57 ~~~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~------i~~~~---------~~~~~~~~~~~~~~~~~~L~i  117 (543)
                      ++....+++|++++|.|.++|...  --+.|+|  .|+-      |.+..         ..|+++..+.  ......|.|
T Consensus         6 esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~--s~nt~yL~~   83 (127)
T d1n0xh1           6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADT--SANTAYMEL   83 (127)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEG--GGTEEEEEE
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEeccc--CceEEEEEE
Confidence            344466789999999999998654  3567775  3322      21111         2466666542  233457999


Q ss_pred             EeeecCCCccEEEEE
Q psy3718         118 KRTERGDSALFTCEI  132 (543)
Q Consensus       118 ~~~~~~D~G~Y~C~a  132 (543)
                      .+++.+|++.|-|.-
T Consensus        84 ~~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          84 RSLRSADTAVYYCAR   98 (127)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             EccCCCCceEEEEEe
Confidence            999999999999964

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.05  E-value=0.0017  Score=47.62  Aligned_cols=72  Identities=26%  Similarity=0.466  Sum_probs=49.0

Q ss_pred             eEeecCCCeEEEEEeeccCC--ceEEEccC--Ceec------CCC--------CCCceEEeeeecCCCceeeEEEEeeec
Q psy3718          61 QTSRRGEPSVLQCEAKGEKP--IGILWNMN--NKRL------DPK--------SDNRYTIREEILPNGVLSDLSIKRTER  122 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~--~~i~W~~~--~~~i------~~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~  122 (543)
                      ..+++|+.++|.|.++|...  -.+.|+|.  |+.+      ...        -..|+++..+.  ......|.|.+++.
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~--s~nt~~L~i~~l~~   87 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDI--VRNILTLQMSRLRS   87 (118)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEET--TTTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccc--cceeeeeccccccC
Confidence            45689999999999998754  46778762  3221      111        12466665442  23345799999999


Q ss_pred             CCCccEEEEEec
Q psy3718         123 GDSALFTCEIKS  134 (543)
Q Consensus       123 ~D~G~Y~C~a~n  134 (543)
                      +|++.|-|....
T Consensus        88 eDtA~YyCAr~~   99 (118)
T d1lo4h1          88 EDTAIYYCARGT   99 (118)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcceEEEecccC
Confidence            999999996543

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.05  E-value=0.00044  Score=50.69  Aligned_cols=77  Identities=14%  Similarity=0.250  Sum_probs=46.0

Q ss_pred             EeecceeE-eecCCCeEEEEEeecc-CC---ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC--Cc-
Q psy3718          55 EIKLRNQT-SRRGEPSVLQCEAKGE-KP---IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD--SA-  126 (543)
Q Consensus        55 ~~~~~~~~-v~~g~~~~l~C~~~g~-p~---~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D--~G-  126 (543)
                      +.+|.... ...+.+++|.|.+.|. |.   .++.|.+||..+........    ....+|..+......+..+|  .| 
T Consensus         4 l~pPs~~~~~~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~----~~~~~gtys~~S~L~v~~~~W~~g~   79 (103)
T d1i1ca1           4 IFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAP----EKQSNSTLRSVSELPIVERDWLNGK   79 (103)
T ss_dssp             EECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCC----EECTTSCEEEEEEEECCHHHHHTTC
T ss_pred             EECcChHHHhccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCc----EECCCCCEEEEEEEEECHHHhcCCC
Confidence            44444332 3467889999999884 43   68899999988743221111    11234443333444455543  55 


Q ss_pred             cEEEEEecc
Q psy3718         127 LFTCEIKSQ  135 (543)
Q Consensus       127 ~Y~C~a~n~  135 (543)
                      .|+|.+...
T Consensus        80 ~~tC~V~H~   88 (103)
T d1i1ca1          80 TFKCKVNSG   88 (103)
T ss_dssp             CEEEEEECS
T ss_pred             EEEEEEEeC
Confidence            599999985

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.03  E-value=0.001  Score=49.29  Aligned_cols=72  Identities=19%  Similarity=0.315  Sum_probs=49.3

Q ss_pred             eEeecCCCeEEEEEeeccCC--ceEEEcc--CCee------cCCCC---------CCceEEeeeecCCCceeeEEEEeee
Q psy3718          61 QTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKR------LDPKS---------DNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~------i~~~~---------~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      -.+++|++++|.|.++|...  -.+.|+|  .|+.      |....         ..|+++..+.  ......|.|.+++
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~--s~~~~~L~i~sL~   87 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDN--SKNTLYLQMNSLR   87 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEET--TTTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccc--cceeEEeeeeecc
Confidence            45689999999999998643  4677875  3332      22111         2366665442  2334579999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      .+|++.|-|....
T Consensus        88 ~eDtAvYYCAr~~  100 (121)
T d1ol0a_          88 AEDTAVYYCAREP  100 (121)
T ss_dssp             GGGCEEEEEEECC
T ss_pred             cccceEEEEEEec
Confidence            9999999997654

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.03  E-value=0.001  Score=49.10  Aligned_cols=72  Identities=22%  Similarity=0.318  Sum_probs=48.5

Q ss_pred             eEeecCCCeEEEEEeeccCC--ceEEEccC--Ceec------CCCC---------CCceEEeeeecCCCceeeEEEEeee
Q psy3718          61 QTSRRGEPSVLQCEAKGEKP--IGILWNMN--NKRL------DPKS---------DNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~--~~i~W~~~--~~~i------~~~~---------~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      ..+++|++++|.|.++|...  -.+.|+|-  |+-+      ....         ..|+++..+.  ....-.|.|.+++
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~--s~~t~yLq~~~L~   87 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDK--GKNTVYLQMDSLK   87 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTT--STTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecC--CceEEEEEeeecc
Confidence            45789999999999998643  56778762  3221      1111         2366665432  2334579999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      .+|++.|-|....
T Consensus        88 ~eDtAvYYCAr~~  100 (121)
T d2p49b1          88 PEDTATYYCAAGG  100 (121)
T ss_dssp             GGGCEEEEEEESS
T ss_pred             ccceeEEeeeccC
Confidence            9999999997643

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.02  E-value=0.0012  Score=49.21  Aligned_cols=75  Identities=20%  Similarity=0.359  Sum_probs=49.8

Q ss_pred             cceeEeecCCCeEEEEEeeccCC--ceEEEcc--CCeec------CCCC---------CCceEEeeeecCCCceeeEEEE
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKRL------DPKS---------DNRYTIREEILPNGVLSDLSIK  118 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i------~~~~---------~~~~~~~~~~~~~~~~~~L~i~  118 (543)
                      +....+++|++++|.|.++|...  -.+.|+|  .|+-+      ....         ..|+++..+.  ....-.|.|.
T Consensus         7 sg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~--s~n~vyL~l~   84 (125)
T d1rihh1           7 SGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADR--SSNTAFMYLN   84 (125)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEET--TTTEEEEEEC
T ss_pred             ECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEeccc--CcceEeeeee
Confidence            34456789999999999998653  3567775  23211      1111         2456665432  2334579999


Q ss_pred             eeecCCCccEEEEEec
Q psy3718         119 RTERGDSALFTCEIKS  134 (543)
Q Consensus       119 ~~~~~D~G~Y~C~a~n  134 (543)
                      +++.+|++.|-|....
T Consensus        85 sL~~eDtAvYYCAR~~  100 (125)
T d1rihh1          85 SLTSEDSAVYYCARES  100 (125)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             ccCcccceEEEEeeeC
Confidence            9999999999997654

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.01  E-value=0.0012  Score=49.48  Aligned_cols=72  Identities=21%  Similarity=0.369  Sum_probs=49.1

Q ss_pred             eEeecCCCeEEEEEeeccCC--ceEEEccC--CeecC--------------------CCCCCceEEeeeecCCCceeeEE
Q psy3718          61 QTSRRGEPSVLQCEAKGEKP--IGILWNMN--NKRLD--------------------PKSDNRYTIREEILPNGVLSDLS  116 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~--~~i~W~~~--~~~i~--------------------~~~~~~~~~~~~~~~~~~~~~L~  116 (543)
                      -.+++|++++|.|.++|...  -.+.|+|.  |+-+.                    ..-..|+++..+.  ......|+
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~--s~~~~~L~   87 (127)
T d1i3ua_          10 GLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDN--AKNTVNLQ   87 (127)
T ss_dssp             EECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEG--GGTEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccC--CceEEEEe
Confidence            45679999999999998653  56788863  22110                    0011366665432  23345799


Q ss_pred             EEeeecCCCccEEEEEec
Q psy3718         117 IKRTERGDSALFTCEIKS  134 (543)
Q Consensus       117 i~~~~~~D~G~Y~C~a~n  134 (543)
                      |.+++.+|++.|-|.+..
T Consensus        88 i~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          88 MNSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             ECSCCGGGCEEEEEEEES
T ss_pred             eecccccceeEEEEEEEe
Confidence            999999999999998755

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00083  Score=44.54  Aligned_cols=58  Identities=12%  Similarity=0.253  Sum_probs=40.9

Q ss_pred             ecCCCeEEEEEeeccCC--ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEec
Q psy3718          64 RRGEPSVLQCEAKGEKP--IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKS  134 (543)
Q Consensus        64 ~~g~~~~l~C~~~g~p~--~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  134 (543)
                      ..|..+.|.|.....+.  .--.|.|+|+.|..+....-           ...+.|..  .+|+|.|.|+--+
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~~-----------~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQ-----------KTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCS-----------EEEEEECG--GGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCCC-----------ceEEEEec--CCCCceEEEEEcC
Confidence            56888999999977543  45679999999964432221           13466654  7789999998543

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.00  E-value=0.0015  Score=48.81  Aligned_cols=75  Identities=17%  Similarity=0.306  Sum_probs=50.5

Q ss_pred             cceeEeecCCCeEEEEEeeccCC--ceEEEcc--CCeec------CCC---------CCCceEEeeeecCCCceeeEEEE
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKRL------DPK---------SDNRYTIREEILPNGVLSDLSIK  118 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i------~~~---------~~~~~~~~~~~~~~~~~~~L~i~  118 (543)
                      +....+++|++++|+|.++|...  --+.|+|  .|+-+      ...         -..|+++..+.  ....-.|.+.
T Consensus         6 sg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~--s~~tv~L~~~   83 (130)
T d1rhhb1           6 SGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQ--ATSTAYMELT   83 (130)
T ss_dssp             CCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEET--TTTEEEEEEC
T ss_pred             cCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccC--CccEEEEEee
Confidence            33445789999999999998643  4677775  23321      111         12466666542  2334579999


Q ss_pred             eeecCCCccEEEEEec
Q psy3718         119 RTERGDSALFTCEIKS  134 (543)
Q Consensus       119 ~~~~~D~G~Y~C~a~n  134 (543)
                      +++.+|++.|-|....
T Consensus        84 ~L~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          84 NLRSDDTAVYYCARDF   99 (130)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             ccCCCCcEEEEEEeec
Confidence            9999999999997654

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00091  Score=50.40  Aligned_cols=70  Identities=7%  Similarity=0.097  Sum_probs=42.7

Q ss_pred             eecCCCeEEEEEeeccCC--c-eEEEccC-CeecC-------------CCCCCceEEeeeecCCCceeeEEEEeeecCCC
Q psy3718          63 SRRGEPSVLQCEAKGEKP--I-GILWNMN-NKRLD-------------PKSDNRYTIREEILPNGVLSDLSIKRTERGDS  125 (543)
Q Consensus        63 v~~g~~~~l~C~~~g~p~--~-~i~W~~~-~~~i~-------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~  125 (543)
                      +.+|+.++|.|...+...  . .+.|++. +..+.             .....++.+...  ......+|+|.+++.+|+
T Consensus        12 v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~l~~~Ds   89 (118)
T d1yjdc1          12 VAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGK--LGNESVTFYLQNLYVNQT   89 (118)
T ss_dssp             ECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEE--ECSSEEEEEEESCCGGGC
T ss_pred             EeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEE--CCCCeEEEEECCCCcccC
Confidence            567999999999875432  2 2345542 21110             001123333322  123345799999999999


Q ss_pred             ccEEEEEec
Q psy3718         126 ALFTCEIKS  134 (543)
Q Consensus       126 G~Y~C~a~n  134 (543)
                      |.|.|.+..
T Consensus        90 avYyCa~~~   98 (118)
T d1yjdc1          90 DIYFCKIEV   98 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEec
Confidence            999998766

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.99  E-value=0.0017  Score=48.28  Aligned_cols=72  Identities=21%  Similarity=0.386  Sum_probs=49.0

Q ss_pred             eEeecCCCeEEEEEeeccCC--ceEEEcc--CCeec------CCC---------CCCceEEeeeecCCCceeeEEEEeee
Q psy3718          61 QTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKRL------DPK---------SDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i------~~~---------~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      ..+++|++++|+|.++|...  -.+.|.|  .|+-+      ...         -..|+++..+.  ......|.|.+++
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~--s~~t~yL~~~sL~   87 (127)
T d2fx7h1          10 EVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADR--STSTAYLELNSLR   87 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEET--TTTEEEEEECSCC
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccC--ccceEeeeecccC
Confidence            45678999999999998643  4567775  23211      111         12466666542  2334579999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      .+|++.|-|....
T Consensus        88 ~eDTavYYCAR~~  100 (127)
T d2fx7h1          88 PEDTAVYYCAREG  100 (127)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccceEEEEeecc
Confidence            9999999997654

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.98  E-value=0.0024  Score=47.19  Aligned_cols=72  Identities=21%  Similarity=0.303  Sum_probs=49.8

Q ss_pred             eEeecCCCeEEEEEeeccCC--ceEEEcc--CCeec------CC-----------CCCCceEEeeeecCCCceeeEEEEe
Q psy3718          61 QTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKRL------DP-----------KSDNRYTIREEILPNGVLSDLSIKR  119 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i------~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~  119 (543)
                      -.+++|++++|.|.++|...  -.+.|+|  .|+-+      ..           .-..|+++..+.  ......|+|.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~--s~nt~~L~~~s   87 (122)
T d1q9rb1          10 GLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDN--SQSILYLQMNT   87 (122)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEET--TTTEEEEEECS
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeec--ccceeccceee
Confidence            45788999999999998754  3677885  33322      11           112466665542  23335799999


Q ss_pred             eecCCCccEEEEEec
Q psy3718         120 TERGDSALFTCEIKS  134 (543)
Q Consensus       120 ~~~~D~G~Y~C~a~n  134 (543)
                      ++++|++.|-|....
T Consensus        88 L~~eDTAvYYCar~~  102 (122)
T d1q9rb1          88 LRAEDSATYYCARDH  102 (122)
T ss_dssp             CCGGGCEEEEEEECC
T ss_pred             eccCcceEEEEEecC
Confidence            999999999998755

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.97  E-value=0.0011  Score=49.25  Aligned_cols=72  Identities=22%  Similarity=0.289  Sum_probs=49.2

Q ss_pred             eEeecCCCeEEEEEeeccCC--ceEEEcc--CCee------cCCCC---------CCceEEeeeecCCCceeeEEEEeee
Q psy3718          61 QTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKR------LDPKS---------DNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~------i~~~~---------~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      -.+++|++++|.|.++|...  -.+.|+|  .|+-      |....         ..|+++..+.  ......|.|.+++
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~--s~nt~~L~~~~L~   87 (126)
T d1dfbh1          10 GLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDN--AKNSLYLQMNSLR   87 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEET--TTTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccC--CCcEEEeeeeeec
Confidence            45689999999999998654  4677876  2322      22111         2456665442  2334579999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      ++|++.|-|....
T Consensus        88 ~eDtavYYCAr~~  100 (126)
T d1dfbh1          88 AEDMALYYCVKGR  100 (126)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCcceEEEEEecc
Confidence            9999999997654

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=96.96  E-value=0.00014  Score=51.86  Aligned_cols=45  Identities=7%  Similarity=-0.175  Sum_probs=30.4

Q ss_pred             ccEEEeecC------CCeEEecCc---eEEEec----CCeEEEEEEecCCCCCCCceEEEe
Q psy3718           2 ENFFFYRGF------NPRILLGRV---LLPIGE----SSFHFDPELLNPSFNGFPPLLLSS   49 (543)
Q Consensus         2 ~~~~~~~~~------~~~~~~~~g---~L~I~~----D~G~Y~C~a~n~~g~~~s~~l~v~   49 (543)
                      +.++|+++.      +++.+..+|   .|.|.+    |+|.|+|.|.|.   ..++.|.|.
T Consensus        30 ~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~---~~sa~l~V~   87 (89)
T d1tiua_          30 VHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANA---KSAANLKVK   87 (89)
T ss_dssp             CCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSC---BCCEEEEEE
T ss_pred             cEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECce---EEEEEEEEE
Confidence            345676533      233333333   799999    999999999873   356788875

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00017  Score=53.23  Aligned_cols=34  Identities=26%  Similarity=0.373  Sum_probs=27.1

Q ss_pred             EEEecceEEEeecCceeecceec-CCCCCeeeEEe
Q psy3718         508 IASFNDNFTATYTEDIKLPCLTV-GVPAPEIIWKT  541 (543)
Q Consensus       508 ~~~~~~~~~~~~~~~~~l~c~~~-g~p~p~~~w~~  541 (543)
                      +..+.....+..|+.++|.|.+. |.|.|+++|+|
T Consensus         5 ~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~   39 (104)
T d1nbqa2           5 KPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFK   39 (104)
T ss_dssp             CCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEE
T ss_pred             ccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEE
Confidence            33333445677899999999985 89999999997

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.94  E-value=0.0013  Score=48.38  Aligned_cols=73  Identities=21%  Similarity=0.326  Sum_probs=48.8

Q ss_pred             ceeEeecCCCeEEEEEeeccCC--ceEEEcc--CCeec------CC--C---------CCCceEEeeeecCCCceeeEEE
Q psy3718          59 RNQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKRL------DP--K---------SDNRYTIREEILPNGVLSDLSI  117 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i------~~--~---------~~~~~~~~~~~~~~~~~~~L~i  117 (543)
                      ....+++|++++|.|.++|...  -.+.|+|  .|+-+      ..  .         -..|+++..+.  ....-.|.+
T Consensus         8 G~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~--s~nt~yL~~   85 (121)
T d1nfdf1           8 GGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDD--SRNSIYLQM   85 (121)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECT--TTSEEEEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEcccc--ccceeecee
Confidence            3456789999999999998754  4567886  34321      11  1         12345554332  233457999


Q ss_pred             EeeecCCCccEEEEEe
Q psy3718         118 KRTERGDSALFTCEIK  133 (543)
Q Consensus       118 ~~~~~~D~G~Y~C~a~  133 (543)
                      .+++.+|++.|-|...
T Consensus        86 ~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          86 NRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             ESCCGGGCEECEEEEE
T ss_pred             cccCCCcceEEEEecc
Confidence            9999999999999654

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.94  E-value=0.002  Score=47.26  Aligned_cols=73  Identities=21%  Similarity=0.368  Sum_probs=49.4

Q ss_pred             eeEeecCCCeEEEEEeeccCC--ceEEEcc--CCeec------CCCC---------CCceEEeeeecCCCceeeEEEEee
Q psy3718          60 NQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKRL------DPKS---------DNRYTIREEILPNGVLSDLSIKRT  120 (543)
Q Consensus        60 ~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i------~~~~---------~~~~~~~~~~~~~~~~~~L~i~~~  120 (543)
                      .-.+++|++++|.|.++|...  -.+.|.|  .|+-+      ....         ..|+++..+.  ......|.+.++
T Consensus         9 ~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~--s~nt~~L~m~~L   86 (120)
T d1ad9b1           9 AEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDT--STNTAYMELSSL   86 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEET--TTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecC--cceEEecccccc
Confidence            345789999999999998654  4677775  23221      1111         2566665442  233468999999


Q ss_pred             ecCCCccEEEEEec
Q psy3718         121 ERGDSALFTCEIKS  134 (543)
Q Consensus       121 ~~~D~G~Y~C~a~n  134 (543)
                      +.+|++.|-|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (120)
T d1ad9b1          87 RSEDTAFYFCAREK  100 (120)
T ss_dssp             CGGGCEEEEEEEEB
T ss_pred             CCCcceEEEEEEcC
Confidence            99999999996543

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00096  Score=48.79  Aligned_cols=78  Identities=15%  Similarity=0.244  Sum_probs=47.9

Q ss_pred             EEeecceeEeecCCCeEEEEEeecc-CC---ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC---Cc
Q psy3718          54 FEIKLRNQTSRRGEPSVLQCEAKGE-KP---IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD---SA  126 (543)
Q Consensus        54 ~~~~~~~~~v~~g~~~~l~C~~~g~-p~---~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D---~G  126 (543)
                      ++.+|....+..++.++|.|.+.|. |.   .++.|.+++........ .   ......++..+......+..+|   ..
T Consensus         4 ~l~pPs~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~-~---~~~~~~~gt~s~~S~L~v~~~~w~~g~   79 (103)
T d1fp5a1           4 YLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHST-R---KEEKQRNGTLTVTSTLPVGTRDWIEGE   79 (103)
T ss_dssp             EEECCCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCE-E---EEEEETTTEEEEEEEEECCHHHHHTTC
T ss_pred             EEeCcCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEE-c---ccEECCCCCEEEEEEEEEcHHHhCCCC
Confidence            3445555556678999999999984 43   57788888876532211 1   1111234444444444455554   57


Q ss_pred             cEEEEEecc
Q psy3718         127 LFTCEIKSQ  135 (543)
Q Consensus       127 ~Y~C~a~n~  135 (543)
                      .|+|.+...
T Consensus        80 ~~tC~V~H~   88 (103)
T d1fp5a1          80 TYQCRVTHP   88 (103)
T ss_dssp             CEEEEEECS
T ss_pred             eEEEEEEEC
Confidence            899999885

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00097  Score=48.68  Aligned_cols=67  Identities=18%  Similarity=0.331  Sum_probs=41.2

Q ss_pred             cCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecC---CCccEEEEEecc
Q psy3718          65 RGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERG---DSALFTCEIKSQ  135 (543)
Q Consensus        65 ~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~---D~G~Y~C~a~n~  135 (543)
                      .++.++|.|.+.|. |. ..|.|.+||.......    ........+|.........+..+   ..-.|+|.+...
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~----~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~   89 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYK----TTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHE   89 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEE----ECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeE----EcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeC
Confidence            46789999999994 54 7999999998764211    11111123444333333333333   345799999885

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=96.88  E-value=0.00062  Score=50.64  Aligned_cols=41  Identities=5%  Similarity=-0.179  Sum_probs=30.3

Q ss_pred             ccEEEeecCC-------------CeEEecCceEEEec----CCe---EEEEEEecCCCCCC
Q psy3718           2 ENFFFYRGFN-------------PRILLGRVLLPIGE----SSF---HFDPELLNPSFNGF   42 (543)
Q Consensus         2 ~~~~~~~~~~-------------~~~~~~~g~L~I~~----D~G---~Y~C~a~n~~g~~~   42 (543)
                      |++.|++..+             ......+++|.|.+    |+|   .|+|.|.|.+|...
T Consensus        33 p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~~   93 (111)
T d1biha2          33 PLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEE   93 (111)
T ss_dssp             CEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSC
T ss_pred             CEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCCce
Confidence            5788887432             12345678999999    655   89999999998763

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.88  E-value=0.00011  Score=56.67  Aligned_cols=38  Identities=16%  Similarity=0.028  Sum_probs=31.0

Q ss_pred             ceEEEec----CCeEEEEEEecCCCCC-CCceEEEeCCCeEEe
Q psy3718          19 VLLPIGE----SSFHFDPELLNPSFNG-FPPLLLSSAPPEFEI   56 (543)
Q Consensus        19 g~L~I~~----D~G~Y~C~a~n~~g~~-~s~~l~v~~~p~~~~   56 (543)
                      .+|.|.+    |+|.|.|.+.+..+.. ....|.|.+|+.++.
T Consensus        81 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~~~~  123 (126)
T d1pkoa_          81 VALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWIN  123 (126)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECTTTTSS
T ss_pred             EEEEEEEEchhHCeEEEEEEEECCCEEEEEEEEEEeCCCEEeC
Confidence            4899999    9999999999987765 456899988776543

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.88  E-value=0.002  Score=47.80  Aligned_cols=73  Identities=22%  Similarity=0.420  Sum_probs=50.6

Q ss_pred             eEeecCCCeEEEEEeeccCC--ceEEEccC--Cee------cCCCC---------CCceEEeeeecCCCceeeEEEEeee
Q psy3718          61 QTSRRGEPSVLQCEAKGEKP--IGILWNMN--NKR------LDPKS---------DNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~--~~i~W~~~--~~~------i~~~~---------~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      -.+++|++++|+|.++|...  -.+.|+|.  |+-      |....         ..|+++..+.  ......|.|.+++
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~--s~~t~yLq~~sL~   86 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDK--AKNMAYLRMDSVK   86 (124)
T ss_dssp             EECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEG--GGTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEeccc--ccceeeceecccc
Confidence            45789999999999998654  46788863  332      21111         2466665442  2334579999999


Q ss_pred             cCCCccEEEEEecc
Q psy3718         122 RGDSALFTCEIKSQ  135 (543)
Q Consensus       122 ~~D~G~Y~C~a~n~  135 (543)
                      .+|++.|-|.....
T Consensus        87 ~eDtAvYYCAr~~~  100 (124)
T d1zvya1          87 SEDTAIYTCGATRK  100 (124)
T ss_dssp             GGGCEEEEEEECSS
T ss_pred             CCcceEEEEeeccc
Confidence            99999999987653

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.0019  Score=47.48  Aligned_cols=82  Identities=15%  Similarity=0.325  Sum_probs=45.2

Q ss_pred             CCeEEe-ecceeEeecCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCce---eeEEEEeeecCC
Q psy3718          51 PPEFEI-KLRNQTSRRGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVL---SDLSIKRTERGD  124 (543)
Q Consensus        51 ~p~~~~-~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~D  124 (543)
                      +|.+.+ .|.... ..++.++|.|.+.|. |. ..|.|.+||..+....  ..........+|..   +.|.|..-.=..
T Consensus         5 ~P~V~l~~Ps~~~-~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~--~~~~~~~~~~dgtys~~S~L~v~~~~W~~   81 (107)
T d1c5cl2           5 APSVFIFPPSDEQ-LKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNS--QESVTEQDSKDSTYSLSSTLTLSKADYEK   81 (107)
T ss_dssp             CCEEEEECCCHHH-HHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSE--EEEECCCCTTTCCEEEEEEEEEEHHHHTT
T ss_pred             CCEEEEECCCHHH-hcCCceEEEEEEEEeeCCCCEEEEEECCEECCCCE--EEecccccCCCCcEEEEEEEEECHHHhCC
Confidence            444443 343322 246789999999985 54 7999999998774221  11100011123333   234443322123


Q ss_pred             CccEEEEEecc
Q psy3718         125 SALFTCEIKSQ  135 (543)
Q Consensus       125 ~G~Y~C~a~n~  135 (543)
                      ...|+|.+...
T Consensus        82 ~~~ytC~V~H~   92 (107)
T d1c5cl2          82 HKVYACEVTHQ   92 (107)
T ss_dssp             CCEEEEEEECT
T ss_pred             CCEEEEEEEEC
Confidence            45799999885

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.86  E-value=0.0033  Score=46.79  Aligned_cols=73  Identities=16%  Similarity=0.269  Sum_probs=49.9

Q ss_pred             eEeecCCCeEEEEEeeccCC--ceEEEccC--Cee------cCCCC---------CCceEEeeeecCCCceeeEEEEeee
Q psy3718          61 QTSRRGEPSVLQCEAKGEKP--IGILWNMN--NKR------LDPKS---------DNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~--~~i~W~~~--~~~------i~~~~---------~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      ..+++|++++|.|.++|...  -.+.|+|-  |+-      |....         ..|+++..+.  ......|.|.+++
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~--s~~t~yL~~~~L~   87 (127)
T d2fb4h1          10 GVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRND--SKNTLFLQMDSLR   87 (127)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEET--TTTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccC--CccEEEeeeeeee
Confidence            45689999999999998643  46677752  222      22111         2466665542  3344689999999


Q ss_pred             cCCCccEEEEEecc
Q psy3718         122 RGDSALFTCEIKSQ  135 (543)
Q Consensus       122 ~~D~G~Y~C~a~n~  135 (543)
                      .+|++.|-|.....
T Consensus        88 ~eDTA~YYCAr~~~  101 (127)
T d2fb4h1          88 PEDTGVYFCARDGG  101 (127)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             ecceeEEEEEEecC
Confidence            99999999976553

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.84  E-value=0.0028  Score=46.78  Aligned_cols=74  Identities=19%  Similarity=0.309  Sum_probs=50.5

Q ss_pred             ceeEeecCCCeEEEEEeeccCC--ceEEEcc--CCeec------CCCC---------CCceEEeeeecCCCceeeEEEEe
Q psy3718          59 RNQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKRL------DPKS---------DNRYTIREEILPNGVLSDLSIKR  119 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i------~~~~---------~~~~~~~~~~~~~~~~~~L~i~~  119 (543)
                      ....+++|+++.|+|.++|...  -.+.|.|  .|+-+      ....         ..|+++..+.  ......|.+.+
T Consensus         8 G~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~--s~~t~~L~~~s   85 (124)
T d1yedb1           8 GPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADK--SSSTAYMQLSS   85 (124)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEET--TTTEEEEEEES
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccC--CcceEEecccc
Confidence            3455789999999999998754  4677876  23221      1111         2466665542  23346799999


Q ss_pred             eecCCCccEEEEEec
Q psy3718         120 TERGDSALFTCEIKS  134 (543)
Q Consensus       120 ~~~~D~G~Y~C~a~n  134 (543)
                      ++.+|++.|-|....
T Consensus        86 L~~eDTAvYYCAR~~  100 (124)
T d1yedb1          86 LKSEDSAVYFCTRWG  100 (124)
T ss_dssp             CCGGGCEEEEEEECC
T ss_pred             cCCCcceEEEecccC
Confidence            999999999997544

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.84  E-value=0.00029  Score=52.61  Aligned_cols=28  Identities=25%  Similarity=0.407  Sum_probs=24.7

Q ss_pred             eEEEeecCceeecceec-CCCCCeeeEEe
Q psy3718         514 NFTATYTEDIKLPCLTV-GVPAPEIIWKT  541 (543)
Q Consensus       514 ~~~~~~~~~~~l~c~~~-g~p~p~~~w~~  541 (543)
                      ...+..|++++|.|.+. |.|.|+++|+|
T Consensus        11 ~~~v~~G~~v~L~C~~~~g~p~~~v~W~~   39 (110)
T d1f97a2          11 PSSVTIGNRAVLTCSEHDGSPPSEYSWFK   39 (110)
T ss_dssp             CSEEETTSCEEEEEECSCCBSCCEEEEEE
T ss_pred             CCEEecCCeEEEEEEeecCCCCCEEEEEe
Confidence            34577899999999985 89999999997

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.83  E-value=0.0015  Score=48.35  Aligned_cols=72  Identities=21%  Similarity=0.357  Sum_probs=48.5

Q ss_pred             eEeecCCCeEEEEEeeccCC--ceEEEccC--Cee------cCCCC---------CCceEEeeeecCCCceeeEEEEeee
Q psy3718          61 QTSRRGEPSVLQCEAKGEKP--IGILWNMN--NKR------LDPKS---------DNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~--~~i~W~~~--~~~------i~~~~---------~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      -.+++|++++|+|.++|...  -.+.|+|-  |+-      |....         ..|+++..+.  ......|.|.+++
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~--s~~t~yL~m~sL~   87 (122)
T d1bz7b1          10 GLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDN--PKNTLFLQMTSLR   87 (122)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEG--GGTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccC--CccEeEeeeeeec
Confidence            34678999999999998754  46678762  221      11111         2466665442  2233579999999


Q ss_pred             cCCCccEEEEEec
Q psy3718         122 RGDSALFTCEIKS  134 (543)
Q Consensus       122 ~~D~G~Y~C~a~n  134 (543)
                      .+|++.|-|....
T Consensus        88 ~eDTAvYYCAr~~  100 (122)
T d1bz7b1          88 SEDTAIYYCTRGG  100 (122)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ccCceEEEeecCC
Confidence            9999999997654

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00033  Score=51.96  Aligned_cols=30  Identities=23%  Similarity=0.411  Sum_probs=27.3

Q ss_pred             cceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718         512 NDNFTATYTEDIKLPCLTVGVPAPEIIWKT  541 (543)
Q Consensus       512 ~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~  541 (543)
                      ...+.+..|+++.|.|.+.|.|.|.|.|++
T Consensus         9 ~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~   38 (107)
T d1iray3           9 NETMEVDLGSQIQLICNVTGQLSDIAYWKW   38 (107)
T ss_dssp             SEEEECCTTCCEEEEEEEEECTTCEEEEEE
T ss_pred             CCEEEEeCCCEEEEEEEeccCCCCeEEEEE
Confidence            456788899999999999999999999986

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.0019  Score=47.24  Aligned_cols=84  Identities=13%  Similarity=0.200  Sum_probs=45.3

Q ss_pred             CCeE-EeecceeEeecCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC--C
Q psy3718          51 PPEF-EIKLRNQTSRRGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD--S  125 (543)
Q Consensus        51 ~p~~-~~~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D--~  125 (543)
                      +|.+ ...|........+.++|.|.+.|. |. ..|.|.++|..+.....   . ......+|....-....+..+|  .
T Consensus         5 ~P~V~~l~p~~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~---~-~~~~~~~gtys~~S~L~v~~~eW~~   80 (105)
T d1dn0b2           5 APTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTR---G-FPSVLRGGKYAATSQVLLPSKDVMA   80 (105)
T ss_dssp             CCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEE---E-CCCEEETTEEEEEEEEEECTTCC--
T ss_pred             CCeEEeECCCccccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEE---c-ceEEccCCCEEEEEEEEEcHHHhcc
Confidence            4443 344444555567899999999994 54 89999999876642111   1 1111134433333344444444  3


Q ss_pred             c---cEEEEEecccce
Q psy3718         126 A---LFTCEIKSQKIS  138 (543)
Q Consensus       126 G---~Y~C~a~n~~~s  138 (543)
                      |   .|+|.+....++
T Consensus        81 ~~~~~ytC~V~H~~~~   96 (105)
T d1dn0b2          81 GTDEHVVCKVQHPNGN   96 (105)
T ss_dssp             -CCCEEEEEEECTTCC
T ss_pred             CCCCEEEEEEEECCCC
Confidence            3   699999886443

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=6.9e-05  Score=56.70  Aligned_cols=32  Identities=13%  Similarity=-0.042  Sum_probs=26.4

Q ss_pred             eEEEec----C-CeEEEEEEecCCCCC-CCceEEEeCC
Q psy3718          20 LLPIGE----S-SFHFDPELLNPSFNG-FPPLLLSSAP   51 (543)
Q Consensus        20 ~L~I~~----D-~G~Y~C~a~n~~g~~-~s~~l~v~~~   51 (543)
                      .|.|.+    | +|.|+|+|.|..|.. .++.|.|+.+
T Consensus        70 ~L~I~~v~~~D~~G~Y~C~A~N~~G~~~~~~~L~V~~~  107 (115)
T d2crya1          70 TLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGS  107 (115)
T ss_dssp             EEECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCSCS
T ss_pred             EEEEeccchhcCCeEEEEEEEECCCeEEEEEEEEEECC
Confidence            699988    7 799999999999986 5567777544

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.0013  Score=46.72  Aligned_cols=69  Identities=20%  Similarity=0.300  Sum_probs=50.4

Q ss_pred             cceeEeecCCCeEEEEEeeccCCceE-EEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEecc
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGEKPIGI-LWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQ  135 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~p~~~i-~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~  135 (543)
                      |+.+.+.+|+++.+.|.+. +|..++ .|..++..+.+ +...+..+.   ..|    ++|.+++..|.|.|.|.|...
T Consensus        12 p~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p-~g~~v~~Dp---k~G----f~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          12 PEIIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIP-DGKRIIWDS---RKG----FIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             CEEEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECC-CSSSEEEET---TTE----EEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCC-CCCEEEECC---CCC----EEEeCCCcccCeEEEEEEEEC
Confidence            4557899999999999998 455444 46667776643 334454432   233    899999999999999999775

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.78  E-value=0.0024  Score=47.72  Aligned_cols=75  Identities=19%  Similarity=0.315  Sum_probs=50.5

Q ss_pred             cceeEeecCCCeEEEEEeeccCC--ceEEEcc--CCeec------CCCC---------CCceEEeeeecCCCceeeEEEE
Q psy3718          58 LRNQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKRL------DPKS---------DNRYTIREEILPNGVLSDLSIK  118 (543)
Q Consensus        58 ~~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i------~~~~---------~~~~~~~~~~~~~~~~~~L~i~  118 (543)
                      +....+++|++++|+|.++|...  -.+.|+|  .|+-+      ....         ..|+++..+.  ....-.|.+.
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~--s~~t~yL~~~   84 (130)
T d1rzga1           7 SGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADE--STSTAYMELS   84 (130)
T ss_dssp             CCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEET--TTTEEEEEEC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEeccc--ccceEEeeee
Confidence            33455789999999999998754  4677876  33321      1111         1356665442  2234579999


Q ss_pred             eeecCCCccEEEEEec
Q psy3718         119 RTERGDSALFTCEIKS  134 (543)
Q Consensus       119 ~~~~~D~G~Y~C~a~n  134 (543)
                      +++.+|++.|-|....
T Consensus        85 sL~~eDtA~YYCAr~~  100 (130)
T d1rzga1          85 SLRSEDTAVFYCASPY  100 (130)
T ss_dssp             SCCGGGCEEEEEEECC
T ss_pred             ecCCCccEEEEEEEec
Confidence            9999999999998654

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.78  E-value=0.0037  Score=46.79  Aligned_cols=73  Identities=21%  Similarity=0.336  Sum_probs=49.4

Q ss_pred             eEeecCCCeEEEEEeeccCC--ceEEEcc--CCeec------C---------CCCCCceEEeeeecCCCceeeEEEEeee
Q psy3718          61 QTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKRL------D---------PKSDNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i------~---------~~~~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      ..+++|+++.|.|.++|...  -.+.|+|  .|+-+      .         ..-..|+++..+.  ......|.+.+++
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~--s~~t~~L~~~~L~   86 (133)
T d1rzfh1           9 EVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADE--STRTVYLHLRGLR   86 (133)
T ss_dssp             EEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEET--TTTEEEEEECSCC
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEecc--CcceeEEeeccCC
Confidence            45789999999999998654  4566765  22211      0         1112566665542  2334679999999


Q ss_pred             cCCCccEEEEEecc
Q psy3718         122 RGDSALFTCEIKSQ  135 (543)
Q Consensus       122 ~~D~G~Y~C~a~n~  135 (543)
                      .+|++.|-|.....
T Consensus        87 ~eDtA~YYCAr~~~  100 (133)
T d1rzfh1          87 SDDTAVYYCASNSI  100 (133)
T ss_dssp             GGGCEEEEEEEEEC
T ss_pred             CCCCEEEEeeeccC
Confidence            99999999966543

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=96.76  E-value=0.0036  Score=45.85  Aligned_cols=74  Identities=14%  Similarity=0.209  Sum_probs=49.1

Q ss_pred             ceeEeecCCCeEEEEEeeccCC--ceEEEcc--CCee------cCCC---------CCCceEEeeeecCCCceeeEEEEe
Q psy3718          59 RNQTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKR------LDPK---------SDNRYTIREEILPNGVLSDLSIKR  119 (543)
Q Consensus        59 ~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~------i~~~---------~~~~~~~~~~~~~~~~~~~L~i~~  119 (543)
                      ....+++|++++|.|.++|...  -.+.|+|  .|+-      |...         -..|+++..+.  ......|.|.+
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~--s~~t~yL~i~~   85 (118)
T d1ct8b1           8 GAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDT--SSSTAYMQFSS   85 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEG--GGTEEEEEECS
T ss_pred             CCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecC--ccceEEecccc
Confidence            3456789999999999998643  4666765  2322      1111         12456665432  23345899999


Q ss_pred             eecCCCccEEEEEec
Q psy3718         120 TERGDSALFTCEIKS  134 (543)
Q Consensus       120 ~~~~D~G~Y~C~a~n  134 (543)
                      ++.+|++.|-|....
T Consensus        86 L~~eDtAvYYCAr~~  100 (118)
T d1ct8b1          86 LTTEDSAIYYCARYR  100 (118)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             cCCCcceEEEEeeec
Confidence            999999999996543

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.76  E-value=0.00034  Score=51.70  Aligned_cols=37  Identities=5%  Similarity=0.003  Sum_probs=27.9

Q ss_pred             CeEEecCceEEEec----CCeEEEEEEecCCCCC--CCceEEE
Q psy3718          12 PRILLGRVLLPIGE----SSFHFDPELLNPSFNG--FPPLLLS   48 (543)
Q Consensus        12 ~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~--~s~~l~v   48 (543)
                      +..+..||+|.|.+    |+|.|+|.+.+..+..  +++.|.|
T Consensus        64 R~~l~~ngSL~I~~v~~~D~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          64 REIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             SEEECTTSCEEECSCCGGGCEEEEEEEEETTEEECCCCEEECC
T ss_pred             EEEEcccccEEEcCCCchhCEEEEEEEEECCCCEEEEEEEEEE
Confidence            34446789999999    9999999998876543  4556655

>d1xzwa1 b.1.12.1 (A:1-119) Purple acid phosphatase, N-terminal domain {Sweet potato (Ipomoea batatas) [TaxId: 4120]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Purple acid phosphatase, N-terminal domain
family: Purple acid phosphatase, N-terminal domain
domain: Purple acid phosphatase, N-terminal domain
species: Sweet potato (Ipomoea batatas) [TaxId: 4120]

Probab=96.70  E-value=0.0069  Score=45.16  Aligned_cols=89  Identities=18%  Similarity=0.228  Sum_probs=54.3

Q ss_pred             CCCeeeEEEecC--CCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEE--Eee---eccCCceeEEEECCCCCC
Q psy3718         250 GPPTHIKVEATD--QNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFET--VDF---SKEEGKEHHLTLSSLKTY  322 (543)
Q Consensus       250 ~~P~~~~~~~~~--~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~i~~L~p~  322 (543)
                      .+|..+++.-..  .+++.|+|.-..+.. ..    -.|+|.............  ...   .......++..|++|+|+
T Consensus        23 ~~P~qvhl~~~~~~~tsm~VsW~T~~~~~-~~----~~V~yG~~~~~~~~~a~g~s~~~~~~~~~~~~~H~v~LtgL~P~   97 (119)
T d1xzwa1          23 NAPQQVHITQGDYEGRGVIISWTTPYDKA-GA----NKVFYWSENSKSQKRAMGTVVTYKYYNYTSAFIHHCTIKDLEYD   97 (119)
T ss_dssp             TCCEEEEEEECSSSSSCEEEEEEESSCCT-TT----TEEEEEETTCCCCEEEECEEECCEETTEECCEEEEEEECCCCTT
T ss_pred             CCCCEEEEEecCCCCCEEEEEEECCCCCC-CC----CEEEEcCCCCCCccEEEEEEEEeecccccCCeEEEEEECCCCCC
Confidence            367788877653  579999999754321 11    256676554332221110  110   011234578999999999


Q ss_pred             CEEEEEEEEEeCCCCCCCCcceeeecc
Q psy3718         323 TQYSVVVQALNKLGPGPMSEEVKQYTA  349 (543)
Q Consensus       323 t~Y~~~V~a~n~~G~s~~s~~~~~~t~  349 (543)
                      +.|.++|-      .+.+|....|+|.
T Consensus        98 T~Y~YrVG------~~~~S~~~~F~T~  118 (119)
T d1xzwa1          98 TKYYYRLG------FGDAKRQFWFVTP  118 (119)
T ss_dssp             CEEEEEEC------CGGGCEEEEEECC
T ss_pred             CEEEEEEC------CCCccceEEEeCC
Confidence            99999983      2336777888774

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.64  E-value=0.00038  Score=51.19  Aligned_cols=72  Identities=17%  Similarity=0.229  Sum_probs=48.4

Q ss_pred             eEeecCCCeEEEEEeeccCC--ceEEEcc--CCeec------CCCC--------CCceEEeeeecCCCceeeEEEEeeec
Q psy3718          61 QTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKRL------DPKS--------DNRYTIREEILPNGVLSDLSIKRTER  122 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i------~~~~--------~~~~~~~~~~~~~~~~~~L~i~~~~~  122 (543)
                      ..+++|++++|+|.++|...  -.+.|+|  .|+.+      ....        ..|+++..+..  ...-.|++.+++.
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s--~~tv~L~~~~L~~   87 (116)
T d1fn4b1          10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTS--KNQVFLKMNSLQT   87 (116)
T ss_dssp             SBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGG--GTEEECCEESCCC
T ss_pred             ceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccc--cchhhcceeccCC
Confidence            34678999999999998654  4677886  34332      2111        13455544322  2235799999999


Q ss_pred             CCCccEEEEEec
Q psy3718         123 GDSALFTCEIKS  134 (543)
Q Consensus       123 ~D~G~Y~C~a~n  134 (543)
                      +|++.|-|....
T Consensus        88 eDTAvYyCAr~~   99 (116)
T d1fn4b1          88 DDTGTYYCTRDL   99 (116)
T ss_dssp             CCCEEEEEEEEC
T ss_pred             CCCEEEEEEeec
Confidence            999999996544

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.59  E-value=0.0062  Score=45.52  Aligned_cols=72  Identities=21%  Similarity=0.326  Sum_probs=49.2

Q ss_pred             eEeecCCCeEEEEEeeccCC--ceEEEcc--CCeec------C-----------CCCCCceEEeeeecCCCceeeEEEEe
Q psy3718          61 QTSRRGEPSVLQCEAKGEKP--IGILWNM--NNKRL------D-----------PKSDNRYTIREEILPNGVLSDLSIKR  119 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p~--~~i~W~~--~~~~i------~-----------~~~~~~~~~~~~~~~~~~~~~L~i~~  119 (543)
                      ..+++|++++|.|.++|...  -.+.|+|  .|+.+      .           +.-..|+++..+..  ...-.|.|.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s--~nt~~Lq~~~   87 (131)
T d3c2ah1          10 GLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDS--KNTLYLQMNS   87 (131)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGG--GTEEEEEECS
T ss_pred             ceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccc--cceeecceec
Confidence            45789999999999998654  4666775  23321      1           11234666654422  2335799999


Q ss_pred             eecCCCccEEEEEec
Q psy3718         120 TERGDSALFTCEIKS  134 (543)
Q Consensus       120 ~~~~D~G~Y~C~a~n  134 (543)
                      ++++|++.|-|....
T Consensus        88 L~~eDTAvYYCAR~~  102 (131)
T d3c2ah1          88 LKTEDTAVYSCTTDG  102 (131)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cccCCceEEEEeccc
Confidence            999999999998764

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00082  Score=48.28  Aligned_cols=37  Identities=14%  Similarity=0.204  Sum_probs=30.9

Q ss_pred             cCceEEEecceEEEeecCceeecceecCCCCCeeeEEe
Q psy3718         504 VPARIASFNDNFTATYTEDIKLPCLTVGVPAPEIIWKT  541 (543)
Q Consensus       504 v~~~~~~~~~~~~~~~~~~~~l~c~~~g~p~p~~~w~~  541 (543)
                      .+..+..+.+.+.+..|++++|.|.+ +.|.|.++|+|
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v-~~p~~~v~W~k   41 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLK   41 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEE
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEE-CCCCceEEEEE
Confidence            35556667777899999999999998 45999999987

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.49  E-value=0.0015  Score=44.78  Aligned_cols=55  Identities=22%  Similarity=0.441  Sum_probs=40.0

Q ss_pred             ecCCCeEEEEEeeccCCceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeee-cCCCccEEEEEecc
Q psy3718          64 RRGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTE-RGDSALFTCEIKSQ  135 (543)
Q Consensus        64 ~~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~n~  135 (543)
                      ..|.+|+|+|...+.  -.|.|.+++..+...++.               .|...+.. .+|+|-|.|...+.
T Consensus        12 ISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~~~---------------~L~L~~FSE~e~SGyY~C~~~~~   67 (100)
T d1jbja2          12 ISGTSVELTCPLDSD--ENLKWEKNGQELPQKHDK---------------HLVLQDFSEVEDSGYYVCYTPAS   67 (100)
T ss_dssp             EETTEEEEECSSCCC--TTCEEEETTEEECSCCCS---------------EEEEESCCTTTSCEEEEEECSSC
T ss_pred             EeCCEEEEECCCCCC--CceEEeeccccCCCCCCc---------------EEEEccccccccCcceEEecCCC
Confidence            359999999998764  469999999998644333               24455544 47999999976553

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.0023  Score=46.84  Aligned_cols=71  Identities=11%  Similarity=0.212  Sum_probs=44.8

Q ss_pred             EeecCCCeEEEEEeecc-CC---ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC---CccEEEEEec
Q psy3718          62 TSRRGEPSVLQCEAKGE-KP---IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD---SALFTCEIKS  134 (543)
Q Consensus        62 ~v~~g~~~~l~C~~~g~-p~---~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D---~G~Y~C~a~n  134 (543)
                      ....++.++|.|.+.|. |.   ..+.|.+++..+......    ......+|..+......+..+|   .-.|+|.+..
T Consensus        14 ~~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~----~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H   89 (105)
T d1l6xa1          14 TLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTK----PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSN   89 (105)
T ss_dssp             HHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEEC----CCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEEC
T ss_pred             hhccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEEC----CcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEe
Confidence            35678999999999984 43   678899999887432111    1111244544444444455543   4589999998


Q ss_pred             cc
Q psy3718         135 QK  136 (543)
Q Consensus       135 ~~  136 (543)
                      ..
T Consensus        90 ~~   91 (105)
T d1l6xa1          90 KA   91 (105)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00056  Score=49.07  Aligned_cols=22  Identities=18%  Similarity=-0.016  Sum_probs=19.4

Q ss_pred             CceEEEec----CCeEEEEEEecCCC
Q psy3718          18 RVLLPIGE----SSFHFDPELLNPSF   39 (543)
Q Consensus        18 ~g~L~I~~----D~G~Y~C~a~n~~g   39 (543)
                      +++|+|.+    |+|.|+|.|.|..+
T Consensus        59 ~~sL~I~~l~~~DsG~Y~c~~~n~~~   84 (93)
T d1ccza1          59 SGSLTIYNLTSSDEDEYEMESPNITD   84 (93)
T ss_dssp             TCCEEECSCCGGGCEEEEEECTTCCS
T ss_pred             eeEEEEEecChhhCEEEEEEEECCCc
Confidence            57999999    99999999988654

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.004  Score=45.32  Aligned_cols=68  Identities=16%  Similarity=0.312  Sum_probs=40.2

Q ss_pred             cCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC--CccEEEEEecccc
Q psy3718          65 RGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD--SALFTCEIKSQKI  137 (543)
Q Consensus        65 ~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D--~G~Y~C~a~n~~~  137 (543)
                      .+..++|.|.+.|. |. ..|.|.+++......     ........+|....-.+..+..+|  ...|+|.+....+
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~-----t~~~~~~~~gtys~~S~L~v~~~~w~~~~ytC~V~H~~~   90 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVH-----TFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPS   90 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE-----ECCCEECTTSCEEEEEEEEEEGGGGGTCCCEEEEEEGGG
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEE-----ECCCeECCCCCEEEEEEEEECccccCCCeEEEEEEeCCC
Confidence            46789999999985 43 799999887542111     111111234443333333344443  5679999998643

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=96.46  E-value=0.00067  Score=47.68  Aligned_cols=43  Identities=12%  Similarity=-0.089  Sum_probs=28.5

Q ss_pred             EEEeecCCCeEEecCceEEEec----CCeEEEEEEecCCCCCCCceEEE
Q psy3718           4 FFFYRGFNPRILLGRVLLPIGE----SSFHFDPELLNPSFNGFPPLLLS   48 (543)
Q Consensus         4 ~~~~~~~~~~~~~~~g~L~I~~----D~G~Y~C~a~n~~g~~~s~~l~v   48 (543)
                      +.|++ ++..+...++.|.|.+    |+|.|+|.|.|..++ ..+.|.|
T Consensus        37 ~~w~~-~g~~~~~~~~~l~i~~v~~~dsG~Y~C~a~ns~~S-~~v~l~V   83 (85)
T d2fcba1          37 IQWFH-NGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLS-DPVHLTV   83 (85)
T ss_dssp             CEEEE-TTEECTTCCSSEEEEECCGGGCEEEEEECTTSBCC-CCEEEEE
T ss_pred             EEeec-ccccccccccceEEeeccccCCcEEEEECCCCccc-ccEEEEE
Confidence            45554 2333334567999998    999999999986432 2356665

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.45  E-value=0.0043  Score=46.48  Aligned_cols=78  Identities=17%  Similarity=0.244  Sum_probs=48.0

Q ss_pred             EEeeccee-EeecCCCeEEEEEeecc-C---CceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC--C-
Q psy3718          54 FEIKLRNQ-TSRRGEPSVLQCEAKGE-K---PIGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD--S-  125 (543)
Q Consensus        54 ~~~~~~~~-~v~~g~~~~l~C~~~g~-p---~~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D--~-  125 (543)
                      ++..|... ....++.++|.|.+.|. |   ...|.|.++|..+.........    ...++..+......+..+|  . 
T Consensus        19 ~i~pPs~~e~~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~----~~~~gt~s~~S~L~v~~~eW~~g   94 (119)
T d1igtb3          19 FIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHR----EDYNSTLRVVSALPIQHQDWMSG   94 (119)
T ss_dssp             EEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCE----EECSSSEEEEEEEECCHHHHHTT
T ss_pred             EEECCChHHhcccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccE----ECCCCcEEEEEEEEEeHHHhCCC
Confidence            33344433 34568999999999984 3   3688999999887543322222    1234544444444455543  4 


Q ss_pred             ccEEEEEecc
Q psy3718         126 ALFTCEIKSQ  135 (543)
Q Consensus       126 G~Y~C~a~n~  135 (543)
                      ..|+|.+...
T Consensus        95 ~~ytC~V~H~  104 (119)
T d1igtb3          95 KEFKCKVNNK  104 (119)
T ss_dssp             CEEEEEEECT
T ss_pred             CeEEEEEEEC
Confidence            5699999985

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.35  E-value=0.0032  Score=43.88  Aligned_cols=62  Identities=21%  Similarity=0.303  Sum_probs=41.7

Q ss_pred             CCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCCCccEEEEEeccc
Q psy3718          67 EPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGDSALFTCEIKSQK  136 (543)
Q Consensus        67 ~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~  136 (543)
                      +.++|.|.+.|. |. +.|.|.++|..+....   ...   ...+|....+.+..+.  ....|+|.+....
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~---~~~---~~~~gtys~~s~~~~~--~~~~yTC~V~H~~   77 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDP---AIV---ISPSGKYNAVKLGKYE--DSNSVTCSVQHDN   77 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCC---EEE---ECTTSSEEEEEEEEET--TTTTCEEEEEETT
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcE---Eee---eccCCcEEEEEEEecC--CCCEEEEEEEECC
Confidence            567999999995 43 7899999998774321   111   2355655555555554  4557999998753

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.016  Score=41.82  Aligned_cols=70  Identities=9%  Similarity=0.218  Sum_probs=41.1

Q ss_pred             ecCCCeEEEEEeec-cCC--ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC---CccEEEEEecccc
Q psy3718          64 RRGEPSVLQCEAKG-EKP--IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD---SALFTCEIKSQKI  137 (543)
Q Consensus        64 ~~g~~~~l~C~~~g-~p~--~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D---~G~Y~C~a~n~~~  137 (543)
                      ..++.++|.|.+.| .|.  ..+.|.+|+..+.....     ......+|.........+..+|   ...|+|.+.....
T Consensus        17 ~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~-----~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~   91 (102)
T d2fbjh2          17 LSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNF-----PPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSN   91 (102)
T ss_dssp             SCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEEC-----CCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTS
T ss_pred             cCCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEe-----eeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCC
Confidence            35788999999999 454  57889998876532111     1111233433333333444444   4569999977533


Q ss_pred             e
Q psy3718         138 S  138 (543)
Q Consensus       138 s  138 (543)
                      .
T Consensus        92 ~   92 (102)
T d2fbjh2          92 P   92 (102)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.25  E-value=0.0034  Score=45.78  Aligned_cols=70  Identities=23%  Similarity=0.387  Sum_probs=47.6

Q ss_pred             eEeecCCCeEEEEEeeccC--CceEEEcc--CCee------cCCCC---------CCceEEeeeecCCCceeeEEEEeee
Q psy3718          61 QTSRRGEPSVLQCEAKGEK--PIGILWNM--NNKR------LDPKS---------DNRYTIREEILPNGVLSDLSIKRTE  121 (543)
Q Consensus        61 ~~v~~g~~~~l~C~~~g~p--~~~i~W~~--~~~~------i~~~~---------~~~~~~~~~~~~~~~~~~L~i~~~~  121 (543)
                      -.+++|++++|+|.++|..  .-.+.|+|  .|+.      |....         ..|+++..+.  ....-.|.+.+++
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~--s~~t~~L~~~sL~   87 (117)
T d1b2wh1          10 GVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDK--SKNTLYLQMNSLR   87 (117)
T ss_dssp             CEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCT--TTTEEEEEECSCC
T ss_pred             ceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEecc--ccceEEeeecccc
Confidence            4578999999999999863  34667876  2321      22111         1466665432  2334579999999


Q ss_pred             cCCCccEEEEE
Q psy3718         122 RGDSALFTCEI  132 (543)
Q Consensus       122 ~~D~G~Y~C~a  132 (543)
                      ++|++.|-|..
T Consensus        88 ~eDTAvYYCAr   98 (117)
T d1b2wh1          88 PEDTAVYYCAR   98 (117)
T ss_dssp             GGGCEEEECCE
T ss_pred             CCcceEEEEcc
Confidence            99999999964

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0041  Score=42.04  Aligned_cols=60  Identities=25%  Similarity=0.468  Sum_probs=42.2

Q ss_pred             cCCCeEEEEEeeccCCceEEEccCCeecCCCCC-CceEEeeeecCCCceeeEEEEeeec-CCCccEEEEEec
Q psy3718          65 RGEPSVLQCEAKGEKPIGILWNMNNKRLDPKSD-NRYTIREEILPNGVLSDLSIKRTER-GDSALFTCEIKS  134 (543)
Q Consensus        65 ~g~~~~l~C~~~g~p~~~i~W~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~n  134 (543)
                      .|.+|.|+|.-.  ....|.|.+++..+...++ ..+....        ..|.+.+... +++|-|.|.+..
T Consensus         9 SGTtV~LTCP~~--~~~~i~W~~n~~~~~~~~~~~~~~~~~--------~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           9 SGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDE--------DHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             ETTEEEEECSSC--TTSCEEEEETTEEESSSCSCTTEEEET--------TEEEETTCCHHHHCEEEEEEETT
T ss_pred             eCCEEEEECCCC--CCCceeeeeccccccCCCccccccccc--------ceEEecccCccccCceEEEEcCC
Confidence            499999999853  3467999999988764332 2333222        1477777665 789999999865

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.10  E-value=0.0048  Score=45.55  Aligned_cols=65  Identities=15%  Similarity=0.245  Sum_probs=41.5

Q ss_pred             cCCCeEEEEEeecc-CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC---CccEEEEEecc
Q psy3718          65 RGEPSVLQCEAKGE-KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD---SALFTCEIKSQ  135 (543)
Q Consensus        65 ~g~~~~l~C~~~g~-p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D---~G~Y~C~a~n~  135 (543)
                      .++.++|.|.+.|. |. ..|.|.+++...      ..........+|.........+..+|   .-.|+|.+...
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~~~------~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~   95 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDSSEPSD------YKNTPPVFDTDGSFFLYSRLKVDTDAWNNGESFTCSVMHE   95 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSSCCTTT------EEEEEEECCSSCCCEEEEEECCCSSCCHHHHCCEEEEEET
T ss_pred             cCCceEEEEEEEeeECCCcEEEEeeCCCCC------cEEcccEECCCCcEEEEEEEEECHHHhCCCCEEEEEEEeC
Confidence            46789999999995 43 799999887421      11111222244544555555666666   45699999885

>d1f6fb1 b.1.2.1 (B:5-100) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.83  E-value=0.017  Score=41.06  Aligned_cols=86  Identities=19%  Similarity=0.394  Sum_probs=56.2

Q ss_pred             CCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEE--CCCCCCCEEEEE
Q psy3718         251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTL--SSLKTYTQYSVV  328 (543)
Q Consensus       251 ~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~L~p~t~Y~~~  328 (543)
                      .|+++.+..-.-..+..+|++....   .....|.+.|+..........  .+.  ......++.+  ..+.....|.|.
T Consensus         2 kP~~~sC~s~~~~~~~C~W~~G~~t---~L~T~Y~l~~~~~~~~~~~eC--p~y--~~~~~~~C~f~~~~~~~~~~y~i~   74 (96)
T d1f6fb1           2 KPEIHKCRSPDKETFTCWWNPGTDG---GLPTNYSLTYSKEGEKTTYEC--PDY--KTSGPNSCFFSKQYTSIWKIYIIT   74 (96)
T ss_dssp             CCEEEEEEBSSSSCEEEEEECCCCT---TSCCEEEEEEEETTEEEEEEC--SCS--STTCTTEEEECTTTCCSSCEEEEE
T ss_pred             CCeEeEEEeCCCCEEEEEeeCCCcC---CcCceEEEEEEecCCCccccC--Ccc--cCCCceeEEECCccCccceEEEEE
Confidence            5778888877777899999997543   234789999986543321100  010  1223345555  557788999999


Q ss_pred             EEEEeCCCCCCCCcce
Q psy3718         329 VQALNKLGPGPMSEEV  344 (543)
Q Consensus       329 V~a~n~~G~s~~s~~~  344 (543)
                      |.|.|..|.. .|+.+
T Consensus        75 V~a~N~LG~~-~Sd~l   89 (96)
T d1f6fb1          75 VNATNQMGSS-SSDPL   89 (96)
T ss_dssp             EEEEETTEEE-ECCCE
T ss_pred             EEEEcCCCCc-ccccE
Confidence            9999999854 34433

>d2hyma1 b.1.2.1 (A:1-109) Interferon-alpha/beta receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-alpha/beta receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.04  Score=39.88  Aligned_cols=78  Identities=14%  Similarity=0.118  Sum_probs=53.1

Q ss_pred             CCeeeEEEecCCCeEEEEeeCCCCCCCCcceeEEEEEEEEcCCCCCceEEEEeeeccCCceeEEEECC--CCCCCEEEEE
Q psy3718         251 PPTHIKVEATDQNTLKVSWSPPERDHWNGVIQGYYVGYKETSTDKPFLFETVDFSKEEGKEHHLTLSS--LKTYTQYSVV  328 (543)
Q Consensus       251 ~P~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~  328 (543)
                      .|.++++... .-.-.|.|+++..   ......|.|+|+..+....|.......   ......|.|..  +.+...|.++
T Consensus        10 ~P~nv~i~s~-Nf~~iL~W~p~~~---s~~~~~YtVqy~~~~~~~~W~~v~~C~---~it~t~CDLT~e~~~~~~~Y~~R   82 (109)
T d2hyma1          10 ESCTFKISLR-NFRSILSWELKNH---SIVPTHYTLLYTIMSKPEDLKVVKNCA---NTTRSFCDLTDEWRSTHEAYVTV   82 (109)
T ss_dssp             CCCEEEEEES-SSCEEEEEECCCS---SCCCCEEEEEEEETTCTTCCEECSSSS---SBSCSEEECTTTCCCSSSCEEEE
T ss_pred             CCeeEEEEEE-CCceEEEECCCCC---CCCCeEEEEEEEEEcccccCccchhhh---CCCCCeEeCchhhccCCccEEEE
Confidence            5778887765 4567899998754   334578999998766544443221111   23567888866  5678889999


Q ss_pred             EEEEeCC
Q psy3718         329 VQALNKL  335 (543)
Q Consensus       329 V~a~n~~  335 (543)
                      |+|..+.
T Consensus        83 V~A~~G~   89 (109)
T d2hyma1          83 LEGFSGN   89 (109)
T ss_dssp             EEEEETT
T ss_pred             EEEEcCC
Confidence            9999643

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.001  Score=48.42  Aligned_cols=74  Identities=16%  Similarity=0.165  Sum_probs=44.0

Q ss_pred             eecceeEeecCCCeEEEEEeecc--CC-ceEEEccCCeecCCCCCCceEEeeeecCCCceeeEEEEeeecCC---CccEE
Q psy3718          56 IKLRNQTSRRGEPSVLQCEAKGE--KP-IGILWNMNNKRLDPKSDNRYTIREEILPNGVLSDLSIKRTERGD---SALFT  129 (543)
Q Consensus        56 ~~~~~~~v~~g~~~~l~C~~~g~--p~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D---~G~Y~  129 (543)
                      ..|....+..++.++|.|.+.|.  |. ..|.|.+++........      .....+|.........+..+|   .-.|+
T Consensus         8 ~~Ps~~~~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~~~~------~~~~~~gt~s~~S~L~v~~~~W~~g~~ft   81 (101)
T d1ow0a1           8 HRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGP------PERDLCGCYSVSSVLPGCAEPWNHGKTFT   81 (101)
T ss_dssp             ECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCBSSCSSCCCEECC------CCCCSTTCCCEEEECTTTHHHHHHTCEEE
T ss_pred             ECCCHHHHccCCCeEEEEEEeCCCCCcceEEEEEECCceeeeecc------eEECCCCCEEEEEEEEEcHHHcCCCCeEE
Confidence            34555556678999999999984  43 68999988754321111      011233432223333444443   45999


Q ss_pred             EEEecc
Q psy3718         130 CEIKSQ  135 (543)
Q Consensus       130 C~a~n~  135 (543)
                      |.+...
T Consensus        82 C~V~H~   87 (101)
T d1ow0a1          82 CTAAYP   87 (101)
T ss_dssp             EEECCS
T ss_pred             EEEEeC
Confidence            999975