Psyllid ID: psy3772

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLLKK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHccccccccccEEEEEEEEEEccEEEEEEEEEEEEEEccccccccEEEEEEEccccEEEEEccccccccEEEEEEEccEEccccHHHHccccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEcccEEEEEEEEEEEEEcccccccEEEEEEEcccccEEEEcccccccccEEEEEEcccHHHHHHHHHHHcccccHHHHHccccc
Coil and Loop (DISEMBL)
MNLIQKIEQEEIIRLKknipdfvtgdtIIVNLNVIEGTRKRIQAYEGIVISRrnkglnsnFIVRKISynegiertfQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLLKK
Flexible Loop (DISEMBL)
MNLIQKIEQEEIIRlkknipdfvtgdTIIVNLNVIEGTRKRIQAYEGIvisrrnkglnsnfIVRKISYnegiertfqlyspiissiivkrrgdvrraklyylrkcsgksarikekllkk
Low Complexity Region (SEG)
MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLLKK
Disordered region (IsUnstruct)
*********EEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCS*************
Disordered Region (DISOPRED)
MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL***
Disordered Region (DISEMBL)
MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLLKK
Disordered Region (DISPRO)
MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCS*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLLKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
A4G2T8	128	50S ribosomal protein L19	yes	N/A	1.0	0.929	0.798	2e-50
A2SES9	117	50S ribosomal protein L19	yes	N/A	0.974	0.991	0.767	5e-47
A1WG50	128	50S ribosomal protein L19	yes	N/A	0.974	0.906	0.767	5e-47
A1WB49	127	50S ribosomal protein L19	yes	N/A	0.974	0.913	0.767	7e-47
B9ME96	127	50S ribosomal protein L19	yes	N/A	0.974	0.913	0.767	7e-47
B2U8L3	128	50S ribosomal protein L19	yes	N/A	0.974	0.906	0.762	2e-46
A6SVI7	128	50S ribosomal protein L19	yes	N/A	1.0	0.929	0.789	2e-46
Q13VF1	128	50S ribosomal protein L19	yes	N/A	1.0	0.929	0.727	2e-46
B1Y0H8	117	50S ribosomal protein L19	yes	N/A	0.974	0.991	0.767	2e-46
Q0BH66	130	50S ribosomal protein L19	yes	N/A	1.0	0.915	0.743	2e-46

>sp|A4G2T8|RL19_HERAR 50S ribosomal protein L19 OS=Herminiimonas arsenicoxydans GN=rplS PE=3 SV=1

 Score =  196 bits (499), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/119 (79%), Positives = 108/119 (90%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
           M+LIQ +EQEEI RL KNIPDF  GDT+IVN+NV+EGTRKR QAYEG+VISRRN+GLNSN
Sbjct: 1   MDLIQTLEQEEIARLAKNIPDFAPGDTVIVNVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLLKK 119
           FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGDVRRAKLYYLR+ SGKSARIKEKL ++
Sbjct: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPQR 119

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
Herminiimonas arsenicoxydans (taxid: 204773)

>sp|A2SES9|RL19_METPP 50S ribosomal protein L19 OS=Methylibium petroleiphilum (strain PM1) GN=rplS PE=3 SV=1

 Score =  186 bits (471), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 89/116 (76%), Positives = 105/116 (90%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
           M+LIQ +EQEEI RL K IP F  GDT+IV++NV+EGTRKR+QAYEG+VI++RN+GLNS+
Sbjct: 1   MDLIQTLEQEEIARLNKTIPAFAPGDTVIVSVNVVEGTRKRLQAYEGVVIAKRNRGLNSS 60

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116
           FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGDVRRAKLYYLR+ SGKSARIKEKL
Sbjct: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRQRSGKSARIKEKL 116

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Methylibium petroleiphilum (strain PM1) (taxid: 420662)

>sp|A1WG50|RL19_VEREI 50S ribosomal protein L19 OS=Verminephrobacter eiseniae (strain EF01-2) GN=rplS PE=3 SV=1

 Score =  186 bits (471), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 89/116 (76%), Positives = 103/116 (88%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
           MNLIQ +E EEI RL K IPDF  GDT+IVN+NV+EG+RKR+QAYEG+VI++RN+GLNS 
Sbjct: 1   MNLIQTLEAEEIARLNKTIPDFSAGDTVIVNVNVVEGSRKRVQAYEGVVIAKRNRGLNSG 60

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116
           FIVRKIS  EG+ERTFQ YSP+I+SI VKRRGDVRRAKLYYLR+ SGKSARIKEKL
Sbjct: 61  FIVRKISSGEGVERTFQTYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKL 116

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Verminephrobacter eiseniae (strain EF01-2) (taxid: 391735)

>sp|A1WB49|RL19_ACISJ 50S ribosomal protein L19 OS=Acidovorax sp. (strain JS42) GN=rplS PE=3 SV=1

 Score =  185 bits (470), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 89/116 (76%), Positives = 102/116 (87%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
           MNLIQ +EQEEI RL K IP F  GDT+IVN+NV+EGTRKR+QAYEG+VI++RN+GLNS 
Sbjct: 1   MNLIQILEQEEIARLNKTIPSFAPGDTVIVNVNVVEGTRKRVQAYEGVVIAKRNRGLNSG 60

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116
           F VRKIS  EG+ERTFQ YSP+I+SI VKRRGDVRRAKLYYLR+ SGKSARIKEKL
Sbjct: 61  FTVRKISSGEGVERTFQTYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKL 116

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Acidovorax sp. (strain JS42) (taxid: 232721)

>sp|B9ME96|RL19_ACIET 50S ribosomal protein L19 OS=Acidovorax ebreus (strain TPSY) GN=rplS PE=3 SV=1

 Score =  185 bits (470), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 89/116 (76%), Positives = 102/116 (87%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
           MNLIQ +EQEEI RL K IP F  GDT+IVN+NV+EGTRKR+QAYEG+VI++RN+GLNS 
Sbjct: 1   MNLIQILEQEEIARLNKTIPSFAPGDTVIVNVNVVEGTRKRVQAYEGVVIAKRNRGLNSG 60

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116
           F VRKIS  EG+ERTFQ YSP+I+SI VKRRGDVRRAKLYYLR+ SGKSARIKEKL
Sbjct: 61  FTVRKISSGEGVERTFQTYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKL 116

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Acidovorax ebreus (strain TPSY) (taxid: 535289)

>sp|B2U8L3|RL19_RALPJ 50S ribosomal protein L19 OS=Ralstonia pickettii (strain 12J) GN=rplS PE=3 SV=1

 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/118 (76%), Positives = 106/118 (89%), Gaps = 2/118 (1%)

Query: 1   MNLIQKIEQEEIIRLKKN--IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLN 58
           MNLI++IEQEEI RL  N  IP F  GDT+IVN+NV+EGTRKR+QAYEG+VI++RN+GLN
Sbjct: 1   MNLIEQIEQEEIKRLTANKTIPPFAPGDTVIVNVNVVEGTRKRVQAYEGVVIAKRNRGLN 60

Query: 59  SNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116
           S+FIVRKIS  EG+ERTFQLYSP+++SI VKRRGDVRRAKLYYLR+ SGKSARIKEKL
Sbjct: 61  SSFIVRKISSGEGVERTFQLYSPLLASIEVKRRGDVRRAKLYYLRQRSGKSARIKEKL 118

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Ralstonia pickettii (strain 12J) (taxid: 402626)

>sp|A6SVI7|RL19_JANMA 50S ribosomal protein L19 OS=Janthinobacterium sp. (strain Marseille) GN=rplS PE=3 SV=1

 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/119 (78%), Positives = 109/119 (91%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
           M+LIQ++EQEEI RL KNIPDF  GDT++VN+NV+EGTRKR QAYEG+VISRRN+GLNSN
Sbjct: 1   MDLIQQLEQEEIARLAKNIPDFAPGDTVVVNVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLLKK 119
           FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGDVRRAKLYYLR+ SGKSARIKEKL ++
Sbjct: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPQR 119

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Janthinobacterium sp. (strain Marseille) (taxid: 375286)

>sp|Q13VF1|RL19_BURXL 50S ribosomal protein L19 OS=Burkholderia xenovorans (strain LB400) GN=rplS PE=3 SV=1

 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/121 (72%), Positives = 107/121 (88%), Gaps = 2/121 (1%)

Query: 1   MNLIQKIEQEEIIRL--KKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLN 58
           MNLI K+EQEEI R   +K IP+F  GDT+IV++NV+EGTRKR+QAYEG+VI++RN+GLN
Sbjct: 1   MNLIAKLEQEEIARALGEKTIPEFAPGDTVIVSVNVVEGTRKRVQAYEGVVIAKRNRGLN 60

Query: 59  SNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLLK 118
           S+FIVRKIS  EG+ERTFQ YSP+++SI+VKRRGDVRRAKLYYLR  SGKSARIKEKL+ 
Sbjct: 61  SSFIVRKISSGEGVERTFQTYSPLLASIVVKRRGDVRRAKLYYLRDRSGKSARIKEKLVS 120

Query: 119 K 119
           K
Sbjct: 121 K 121

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Burkholderia xenovorans (strain LB400) (taxid: 266265)

>sp|B1Y0H8|RL19_LEPCP 50S ribosomal protein L19 OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rplS PE=3 SV=1

 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/116 (76%), Positives = 106/116 (91%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
           M+LIQ++EQEEI RL K IP F  GDT+IV++NV+EGTRKR+QAYEG+VI++RN+GLNS+
Sbjct: 1   MDLIQQLEQEEIARLNKVIPVFAPGDTVIVSVNVVEGTRKRLQAYEGVVIAKRNRGLNSS 60

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116
           FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGDVRRAKLYYLR+ SGKSARIKEKL
Sbjct: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRQRSGKSARIKEKL 116

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (taxid: 395495)

>sp|Q0BH66|RL19_BURCM 50S ribosomal protein L19 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=rplS PE=3 SV=1

 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/121 (74%), Positives = 106/121 (87%), Gaps = 2/121 (1%)

Query: 1   MNLIQKIEQEEIIRL--KKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLN 58
           MNLI K+EQEEI R    K IP+F  GDT+IVN+NV+EGTRKR+QAYEG+VI+ RN+GLN
Sbjct: 1   MNLIAKLEQEEIERALAGKTIPEFAPGDTVIVNVNVVEGTRKRVQAYEGVVIAIRNRGLN 60

Query: 59  SNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLLK 118
           SNFIVRKIS  EG+ERTFQ YSP+++SI+VKRRGDVRRAKLYYLR+ SGKSARIKEKL+ 
Sbjct: 61  SNFIVRKISSGEGVERTFQTYSPLLASIVVKRRGDVRRAKLYYLRERSGKSARIKEKLVS 120

Query: 119 K 119
           K
Sbjct: 121 K 121

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (taxid: 339670)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
134093877	128	50S ribosomal protein L19 [Herminiimonas	1.0	0.929	0.798	1e-48
445495374	128	50S ribosomal protein L19 [Janthinobacte	0.974	0.906	0.818	2e-48
300310840	127	50S ribosomal protein L19 [Herbaspirillu	0.974	0.913	0.810	3e-48
399019425	127	ribosomal protein L19 [Herbaspirillum sp	0.974	0.913	0.810	5e-48
415947047	127	50S ribosomal protein L19 [Herbaspirillu	0.974	0.913	0.801	8e-48
329902142	128	LSU ribosomal protein L19p [Oxalobactera	0.974	0.906	0.801	1e-47
334131669	126	50S ribosomal subunit protein L19 [Methy	1.0	0.944	0.773	2e-47
398835670	130	ribosomal protein L19 [Herbaspirillum sp	0.974	0.892	0.801	5e-47
395761198	127	50S ribosomal protein L19 [Janthinobacte	0.974	0.913	0.793	7e-47
350544113	129	LSU ribosomal protein L19p [Candidatus B	1.0	0.922	0.735	1e-45

>gi|134093877|ref|YP_001098952.1| 50S ribosomal protein L19 [Herminiimonas arsenicoxydans] gi|166199551|sp|A4G2T8.1|RL19_HERAR RecName: Full=50S ribosomal protein L19 gi|133737780|emb|CAL60825.1| 50S ribosomal subunit protein L19 [Herminiimonas arsenicoxydans]

 Score =  196 bits (499), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 95/119 (79%), Positives = 108/119 (90%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
           M+LIQ +EQEEI RL KNIPDF  GDT+IVN+NV+EGTRKR QAYEG+VISRRN+GLNSN
Sbjct: 1   MDLIQTLEQEEIARLAKNIPDFAPGDTVIVNVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLLKK 119
           FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGDVRRAKLYYLR+ SGKSARIKEKL ++
Sbjct: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPQR 119

Source: Herminiimonas arsenicoxydans

Species: Herminiimonas arsenicoxydans

Genus: Herminiimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|445495374|ref|ZP_21462418.1| 50S ribosomal protein L19 [Janthinobacterium sp. HH01] gi|444791535|gb|ELX13082.1| 50S ribosomal protein L19 [Janthinobacterium sp. HH01]

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/116 (81%), Positives = 106/116 (91%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
           MNLIQ++EQEEI RL K+IPDF  GDT+IVN+NV+EGTRKR QAYEG+VISRRN+GLNSN
Sbjct: 1   MNLIQQLEQEEIARLGKSIPDFAPGDTVIVNVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116
           FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGDVRRAKLYYLR  SGKSARIKEKL
Sbjct: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRDRSGKSARIKEKL 116

Source: Janthinobacterium sp. HH01

Species: Janthinobacterium sp. HH01

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|300310840|ref|YP_003774932.1| 50S ribosomal protein L19 [Herbaspirillum seropedicae SmR1] gi|409405345|ref|ZP_11253807.1| 50S ribosomal protein L19 [Herbaspirillum sp. GW103] gi|300073625|gb|ADJ63024.1| 50S ribosomal subunit protein L19 [Herbaspirillum seropedicae SmR1] gi|386433894|gb|EIJ46719.1| 50S ribosomal protein L19 [Herbaspirillum sp. GW103]

 Score =  195 bits (496), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 94/116 (81%), Positives = 107/116 (92%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
           M+LIQ++EQEEI RL KNIPDF  GDT+IVN+NV+EGTRKR QAYEG+VI+RRN+GLNSN
Sbjct: 1   MDLIQQLEQEEIARLAKNIPDFAPGDTVIVNVNVVEGTRKRAQAYEGVVIARRNRGLNSN 60

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116
           FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGDVRRAKLYYLR+ SGKSARIKEKL
Sbjct: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKL 116

Source: Herbaspirillum seropedicae SmR1

Species: Herbaspirillum seropedicae

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|399019425|ref|ZP_10721573.1| ribosomal protein L19 [Herbaspirillum sp. CF444] gi|398098035|gb|EJL88328.1| ribosomal protein L19 [Herbaspirillum sp. CF444]

 Score =  194 bits (494), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 94/116 (81%), Positives = 107/116 (92%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
           M+LIQ++EQEEI RL KNIPDF  GDT+IV++NV+EGTRKR QAYEG+VISRRN+GLNSN
Sbjct: 1   MDLIQQLEQEEISRLAKNIPDFAPGDTVIVSVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116
           FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGDVRRAKLYYLR+ SGKSARIKEKL
Sbjct: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKL 116

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|415947047|ref|ZP_11556549.1| 50S ribosomal protein L19 [Herbaspirillum frisingense GSF30] gi|407758134|gb|EKF68005.1| 50S ribosomal protein L19 [Herbaspirillum frisingense GSF30]

 Score =  194 bits (492), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 93/116 (80%), Positives = 107/116 (92%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
           M+LIQ++EQEEI RL KNIPDF  GDT+IV++NV+EGTRKR QAYEG+VI+RRN+GLNSN
Sbjct: 1   MDLIQQLEQEEIARLAKNIPDFAPGDTVIVSVNVVEGTRKRAQAYEGVVIARRNRGLNSN 60

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116
           FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGDVRRAKLYYLR+ SGKSARIKEKL
Sbjct: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKL 116

Source: Herbaspirillum frisingense GSF30

Species: Herbaspirillum frisingense

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|329902142|ref|ZP_08273046.1| LSU ribosomal protein L19p [Oxalobacteraceae bacterium IMCC9480] gi|327548865|gb|EGF33493.1| LSU ribosomal protein L19p [Oxalobacteraceae bacterium IMCC9480]

 Score =  193 bits (490), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 93/116 (80%), Positives = 107/116 (92%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
           M+LIQ++EQEEI RL K+IPDF  GDT+IV++NV+EGTRKR QAYEG+VISRRN+GLNSN
Sbjct: 1   MDLIQQLEQEEIARLGKSIPDFAPGDTVIVSVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116
           FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGDVRRAKLYYLR+ SGKSARIKEKL
Sbjct: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKL 116

Source: Oxalobacteraceae bacterium IMCC9480

Species: Oxalobacteraceae bacterium IMCC9480

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|334131669|ref|ZP_08505431.1| 50S ribosomal subunit protein L19 [Methyloversatilis universalis FAM5] gi|333443142|gb|EGK71107.1| 50S ribosomal subunit protein L19 [Methyloversatilis universalis FAM5]

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 108/119 (90%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
           MNLIQ++EQEEI RL KNIP+F  GDT+IVN+NV+EG RKR+QAYEG+VI++RN+GLNSN
Sbjct: 1   MNLIQQLEQEEIARLGKNIPEFAPGDTVIVNVNVVEGDRKRVQAYEGVVIAKRNRGLNSN 60

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLLKK 119
           FIVRKIS  EG+ERTFQ YSP+I+SI VKRRGDVRRAKLYYLR+ SGKSARIKEKL K+
Sbjct: 61  FIVRKISSGEGVERTFQTYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLAKR 119

Source: Methyloversatilis universalis FAM5

Species: Methyloversatilis universalis

Genus: Methyloversatilis

Family: Rhodocyclaceae

Order: Rhodocyclales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|398835670|ref|ZP_10593029.1| ribosomal protein L19 [Herbaspirillum sp. YR522] gi|398215475|gb|EJN02037.1| ribosomal protein L19 [Herbaspirillum sp. YR522]

 Score =  191 bits (485), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 93/116 (80%), Positives = 106/116 (91%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
           M+LIQ++EQEEI RL KNIP F  GDT+IV++NV+EGTRKR QAYEG+VISRRN+GLNSN
Sbjct: 1   MDLIQQLEQEEIARLNKNIPAFAPGDTVIVSVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116
           FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGDVRRAKLYYLR+ SGKSARIKEKL
Sbjct: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKL 116

Source: Herbaspirillum sp. YR522

Species: Herbaspirillum sp. YR522

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|395761198|ref|ZP_10441867.1| 50S ribosomal protein L19 [Janthinobacterium lividum PAMC 25724]

 Score =  191 bits (484), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 92/116 (79%), Positives = 106/116 (91%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
           M+LIQ++EQEEI RL K IP+F  GDT+IV++NV+EGTRKR QAYEG+VISRRN+GLNSN
Sbjct: 1   MDLIQQLEQEEIARLGKTIPEFAPGDTVIVSVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116
           FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGDVRRAKLYYLR+ SGKSARIKEKL
Sbjct: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKL 116

Source: Janthinobacterium lividum PAMC 25724

Species: Janthinobacterium lividum

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|350544113|ref|ZP_08913766.1| LSU ribosomal protein L19p [Candidatus Burkholderia kirkii UZHbot1] gi|350528111|emb|CCD36494.1| LSU ribosomal protein L19p [Candidatus Burkholderia kirkii UZHbot1]

 Score =  186 bits (473), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/121 (73%), Positives = 110/121 (90%), Gaps = 2/121 (1%)

Query: 1   MNLIQKIEQEEIIRL--KKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLN 58
           MNLI+++E+EEI R+  +K IPDF  GDT+IVN+NV+EGTRKR+QAYEG+VI++RN+GLN
Sbjct: 1   MNLIEQLEKEEIARVLGEKTIPDFAPGDTVIVNVNVVEGTRKRVQAYEGVVIAKRNRGLN 60

Query: 59  SNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLLK 118
           SNFIVRKIS  EG+ERTFQ YSP+++SI+VKRRGDVRRAKLYYLR+ SGKSARIKEKL+ 
Sbjct: 61  SNFIVRKISSGEGVERTFQTYSPLLASIVVKRRGDVRRAKLYYLRERSGKSARIKEKLVF 120

Query: 119 K 119
           K
Sbjct: 121 K 121

Source: Candidatus Burkholderia kirkii UZHbot1

Species: Candidatus Burkholderia kirkii

Genus: Burkholderia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
UNIPROTKB|Q9KUF7	117	rplS "50S ribosomal protein L1	0.966	0.982	0.618	7.4e-34
TIGR_CMR|VC_0564	117	VC_0564 "ribosomal protein L19	0.966	0.982	0.618	7.4e-34
TIGR_CMR|CBU_0442	115	CBU_0442 "ribosomal protein L1	0.949	0.982	0.608	4.1e-33
TIGR_CMR|SO_1360	117	SO_1360 "ribosomal protein L19	0.983	1.0	0.588	2e-31
UNIPROTKB|P0A7K6	115	rplS "50S ribosomal subunit pr	0.941	0.973	0.573	2.6e-31
TIGR_CMR|CPS_4066	117	CPS_4066 "ribosomal protein L1	0.957	0.974	0.547	6.2e-30
TIGR_CMR|SPO_3257	127	SPO_3257 "ribosomal protein L1	0.957	0.897	0.608	1.6e-29
TIGR_CMR|CHY_1428	113	CHY_1428 "ribosomal protein L1	0.941	0.991	0.547	1.2e-28
TIGR_CMR|GSU_0648	118	GSU_0648 "ribosomal protein L1	0.941	0.949	0.544	3.1e-28
TIGR_CMR|BA_3978	114	BA_3978 "ribosomal protein L19	0.848	0.885	0.584	9.4e-27

UNIPROTKB|Q9KUF7 rplS "50S ribosomal protein L19" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 73/118 (61%), Positives = 95/118 (80%)

Query:     2 NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNF 61
             N+I+ +EQE+   +K+++P F  GDT++V + V EG R+R+QA+EGIVI+ RN+GL+S F
Sbjct:     3 NIIKALEQEQ---MKQDLPQFAPGDTVVVQVKVKEGDRERLQAFEGIVIAIRNRGLHSAF 59

Query:    62 IVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLLKK 119
              VRKIS  EG+ERTFQ +SP++ SI VKRRG VRRAKLYYLR  SGK+ARIKEKL KK
Sbjct:    60 TVRKISNGEGVERTFQTHSPVVDSIEVKRRGAVRRAKLYYLRDLSGKAARIKEKLAKK 117

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_0564 VC_0564 "ribosomal protein L19" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 73/118 (61%), Positives = 95/118 (80%)

Query:     2 NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNF 61
             N+I+ +EQE+   +K+++P F  GDT++V + V EG R+R+QA+EGIVI+ RN+GL+S F
Sbjct:     3 NIIKALEQEQ---MKQDLPQFAPGDTVVVQVKVKEGDRERLQAFEGIVIAIRNRGLHSAF 59

Query:    62 IVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLLKK 119
              VRKIS  EG+ERTFQ +SP++ SI VKRRG VRRAKLYYLR  SGK+ARIKEKL KK
Sbjct:    60 TVRKISNGEGVERTFQTHSPVVDSIEVKRRGAVRRAKLYYLRDLSGKAARIKEKLAKK 117

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CBU_0442 CBU_0442 "ribosomal protein L19" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 70/115 (60%), Positives = 91/115 (79%)

Query:     2 NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNF 61
             N+IQ +E E+     K IPDF  GDT+ V + V EG R+R+QA+EG+VI+RR++GLNS+F
Sbjct:     3 NIIQLLETEQT--QGKEIPDFRAGDTVTVQVKVKEGNRERLQAFEGVVIARRHRGLNSSF 60

Query:    62 IVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116
              VRK+S+ EG+ER FQLYSP+I+SI V RRGDVRRAKLYYLR   G+ A+IKEK+
Sbjct:    61 TVRKVSHGEGVERVFQLYSPLIASIKVNRRGDVRRAKLYYLRNLRGRKAKIKEKI 115

GO:0003735 "structural constituent of ribosome" evidence=ISS

TIGR_CMR|SO_1360 SO_1360 "ribosomal protein L19" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 70/119 (58%), Positives = 94/119 (78%)

Query:     1 MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
             MN I K+  +E  ++K+++P F  GDT++V + V EG ++R+QA+EG+VI++RN+GL+S 
Sbjct:     1 MNNIIKMLNDE--QMKQDVPAFGAGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSA 58

Query:    61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLLKK 119
             F VRKIS  EG+ER FQ +SP+I+SI VKRRG VRRAKLYYLR  SGKSARI+EKL  K
Sbjct:    59 FTVRKISNGEGVERAFQTHSPLIASIEVKRRGRVRRAKLYYLRDRSGKSARIREKLATK 117

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P0A7K6 rplS "50S ribosomal subunit protein L19" [Escherichia coli K-12 (taxid:83333)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 66/115 (57%), Positives = 95/115 (82%)

Query:     2 NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNF 61
             N+I+++EQE+   +K+++P F  GDT+ V + V+EG++KR+QA+EG+VI+ RN+GL+S F
Sbjct:     3 NIIKQLEQEQ---MKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAF 59

Query:    62 IVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116
              VRKIS  EG+ER FQ +SP++ SI VKRRG VR+AKLYYLR+ +GK+ARIKE+L
Sbjct:    60 TVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKERL 114

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

TIGR_CMR|CPS_4066 CPS_4066 "ribosomal protein L19" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 64/117 (54%), Positives = 90/117 (76%)

Query:     3 LIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFI 62
             +++ +EQE+   +K ++P F  GDT++V + V E  + R+QA+EG+VI+ +++GL+S F 
Sbjct:     4 ILEMLEQEQ---MKTDLPAFAPGDTVVVQVKVTEADKSRLQAFEGVVIAVKSRGLHSAFT 60

Query:    63 VRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLLKK 119
             VRKIS   G+ER FQ +SPI+ SI VKRRGDVR+AKLYYLR+ SG+ ARIKEKL KK
Sbjct:    61 VRKISNGVGVERVFQTHSPIVDSIEVKRRGDVRQAKLYYLRELSGRKARIKEKLAKK 117

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|SPO_3257 SPO_3257 "ribosomal protein L19" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 70/115 (60%), Positives = 82/115 (71%)

Query:     1 MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRN-KGLNS 59
             M+LI ++E E+I  L K+IPDF  GDTI V   V EGTR R+Q YEG+ ISR+N  G+  
Sbjct:     1 MDLIAQLEAEQIAALGKDIPDFKAGDTIRVGYKVTEGTRSRVQNYEGVCISRKNGSGIAG 60

Query:    60 NFIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKE 114
             +F VRKIS+ EG+ER F LYS  I SI V RRG VRRAKLYYLR   GKSARI E
Sbjct:    61 SFTVRKISFGEGVERVFPLYSTNIDSITVVRRGRVRRAKLYYLRARRGKSARIAE 115

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

TIGR_CMR|CHY_1428 CHY_1428 "ribosomal protein L19" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 63/115 (54%), Positives = 87/115 (75%)

Query:     1 MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
             M+L++ +E+E+   L+K++P+F  GDT+ V   VIEG R+RIQ YEG+VI +R  GL++ 
Sbjct:     1 MDLLKSLEEEQ---LRKDLPEFRPGDTVKVYFKVIEGNRERIQPYEGVVIRKRGSGLSAT 57

Query:    61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEK 115
             F VR++SY  G+ERTF L+SP I  I V RRG VRRA+LYYLRK +GK+ARI E+
Sbjct:    58 FTVRRVSYGIGVERTFPLHSPRIEKIEVIRRGKVRRARLYYLRKLTGKAARIAER 112

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|GSU_0648 GSU_0648 "ribosomal protein L19" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 61/112 (54%), Positives = 84/112 (75%)

Query:     4 IQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIV 63
             + KI+  E+ ++KKNIP F  GDT+ V++ ++EG + RIQA++G+ ISR+N G+  +F V
Sbjct:     1 MNKIDAIELEQMKKNIPPFKPGDTLKVHVKIVEGDKSRIQAFQGVCISRQNGGIRESFTV 60

Query:    64 RKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEK 115
             RKIS N G+ER F L+SP + +I V  RG VRRAKLYYLRK  GK+ARI+EK
Sbjct:    61 RKISNNIGVERVFPLHSPTVDAIEVITRGHVRRAKLYYLRKLRGKAARIREK 112

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|BA_3978 BA_3978 "ribosomal protein L19" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 59/101 (58%), Positives = 76/101 (75%)

Query:    14 RLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIE 73
             +LK ++P F  GDT+ V++ V+EGTR+RIQ +EG+VI RR  G++  F VRKISY  G+E
Sbjct:    12 QLKTDLPSFRPGDTLRVHVKVVEGTRERIQLFEGVVIKRRGGGISETFTVRKISYGVGVE 71

Query:    74 RTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKE 114
             RTF +++P I+ I V RRG VRRAKLYYLR   GK ARIKE
Sbjct:    72 RTFPVHTPRIAKIEVLRRGKVRRAKLYYLRNLRGKKARIKE 112

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A3NC04	RL19_BURP6	No assigned EC number	0.7272	1.0	0.9224	yes	N/A
B4EAN3	RL19_BURCJ	No assigned EC number	0.7438	1.0	0.9153	yes	N/A
C1DBG1	RL19_LARHH	No assigned EC number	0.7058	1.0	0.9674	yes	N/A
Q5NXM4	RL19_AROAE	No assigned EC number	0.7372	0.9747	0.9062	yes	N/A
B1JXU6	RL19_BURCC	No assigned EC number	0.7438	1.0	0.9153	yes	N/A
Q7NRV7	RL19_CHRVO	No assigned EC number	0.6810	0.9747	0.9508	yes	N/A
Q2L2Q1	RL19_BORA1	No assigned EC number	0.7107	1.0	0.9224	yes	N/A
Q12CW3	RL19_POLSJ	No assigned EC number	0.7226	1.0	0.9834	yes	N/A
Q2SXZ8	RL19_BURTA	No assigned EC number	0.7272	1.0	0.9224	yes	N/A
Q1BY01	RL19_BURCA	No assigned EC number	0.7438	1.0	0.9153	yes	N/A
B2T604	RL19_BURPP	No assigned EC number	0.7190	1.0	0.9224	yes	N/A
A1WG50	RL19_VEREI	No assigned EC number	0.7672	0.9747	0.9062	yes	N/A
Q13VF1	RL19_BURXL	No assigned EC number	0.7272	1.0	0.9296	yes	N/A
A1TND3	RL19_ACIAC	No assigned EC number	0.75	0.9747	0.9062	yes	N/A
Q0AIV2	RL19_NITEC	No assigned EC number	0.6896	0.9747	0.8992	yes	N/A
B1YV60	RL19_BURA4	No assigned EC number	0.7355	1.0	0.9153	yes	N/A
A1K9L2	RL19_AZOSB	No assigned EC number	0.7033	0.9747	0.9062	yes	N/A
Q63S33	RL19_BURPS	No assigned EC number	0.7272	1.0	0.9224	yes	N/A
Q3SGC1	RL19_THIDA	No assigned EC number	0.6896	0.9747	0.9206	yes	N/A
A2SES9	RL19_METPP	No assigned EC number	0.7672	0.9747	0.9914	yes	N/A
A6SVI7	RL19_JANMA	No assigned EC number	0.7899	1.0	0.9296	yes	N/A
B1Y0H8	RL19_LEPCP	No assigned EC number	0.7672	0.9747	0.9914	yes	N/A
A0K5P8	RL19_BURCH	No assigned EC number	0.7438	1.0	0.9153	yes	N/A
A9M2D0	RL19_NEIM0	No assigned EC number	0.7327	0.9747	0.9586	yes	N/A
B4RIW2	RL19_NEIG2	No assigned EC number	0.7327	0.9747	0.9586	yes	N/A
Q5FA60	RL19_NEIG1	No assigned EC number	0.7327	0.9747	0.9586	yes	N/A
Q9K0K5	RL19_NEIMB	No assigned EC number	0.7327	0.9747	0.9586	yes	N/A
B2U8L3	RL19_RALPJ	No assigned EC number	0.7627	0.9747	0.9062	yes	N/A
A1VMA0	RL19_POLNA	No assigned EC number	0.7327	0.9747	0.8923	yes	N/A
A4G2T8	RL19_HERAR	No assigned EC number	0.7983	1.0	0.9296	yes	N/A
A2S4N7	RL19_BURM9	No assigned EC number	0.7272	1.0	0.9224	yes	N/A
A4SW76	RL19_POLSQ	No assigned EC number	0.7288	0.9747	0.8992	yes	N/A
B2JF32	RL19_BURP8	No assigned EC number	0.7190	1.0	0.9370	yes	N/A
A1V6J1	RL19_BURMS	No assigned EC number	0.7272	1.0	0.9224	yes	N/A
Q47BI8	RL19_DECAR	No assigned EC number	0.6974	1.0	0.9444	yes	N/A
Q39ID3	RL19_BURS3	No assigned EC number	0.7272	1.0	0.9153	yes	N/A
A4JCK0	RL19_BURVG	No assigned EC number	0.7355	1.0	0.9153	yes	N/A
Q0BH66	RL19_BURCM	No assigned EC number	0.7438	1.0	0.9153	yes	N/A
A1WB49	RL19_ACISJ	No assigned EC number	0.7672	0.9747	0.9133	yes	N/A
A3NXU0	RL19_BURP0	No assigned EC number	0.7272	1.0	0.9224	yes	N/A
A3MHS0	RL19_BURM7	No assigned EC number	0.7272	1.0	0.9224	yes	N/A
B9ME96	RL19_ACIET	No assigned EC number	0.7672	0.9747	0.9133	yes	N/A
Q62M53	RL19_BURMA	No assigned EC number	0.7272	1.0	0.9224	yes	N/A
A9ADS8	RL19_BURM1	No assigned EC number	0.7272	1.0	0.9153	yes	N/A
Q3JQ09	RL19_BURP1	No assigned EC number	0.7272	1.0	0.9224	yes	N/A
Q8Y0V7	RL19_RALSO	No assigned EC number	0.7542	0.9747	0.9062	yes	N/A
A1KSJ8	RL19_NEIMF	No assigned EC number	0.7327	0.9747	0.9586	yes	N/A
Q9JVL1	RL19_NEIMA	No assigned EC number	0.7327	0.9747	0.9586	yes	N/A
B1XVN0	RL19_POLNS	No assigned EC number	0.7203	0.9747	0.8854	yes	N/A
Q82U36	RL19_NITEU	No assigned EC number	0.6982	0.9747	0.8787	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	119
PRK05338	116	PRK05338, rplS, 50S ribosomal protein L19; Provisi	5e-61
pfam01245	113	pfam01245, Ribosomal_L19, Ribosomal protein L19	2e-52
COG0335	115	COG0335, RplS, Ribosomal protein L19 [Translation,	9e-49
TIGR01024	113	TIGR01024, rplS_bact, ribosomal protein L19, bacte	7e-46
CHL00084	117	CHL00084, rpl19, ribosomal protein L19	7e-34

>gnl|CDD|235418 PRK05338, rplS, 50S ribosomal protein L19; Provisional

 Score =  181 bits (463), Expect = 5e-61
 Identities = 71/119 (59%), Positives = 93/119 (78%), Gaps = 3/119 (2%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
           MNLI++IE E++   +K+IP+F  GDT+ V++ V+EG ++RIQA+EG+VI+RR +GLN  
Sbjct: 1   MNLIKEIEAEQL---RKDIPEFRPGDTVRVHVKVVEGNKERIQAFEGVVIARRGRGLNET 57

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLLKK 119
           F VRKISY  G+ERTF L+SP I SI V RRG VRRAKLYYLR+  GK+ARIKE+   K
Sbjct: 58  FTVRKISYGVGVERTFPLHSPRIDSIEVVRRGKVRRAKLYYLRELRGKAARIKERRDAK 116

Length = 116

>gnl|CDD|201683 pfam01245, Ribosomal_L19, Ribosomal protein L19

 Score =  159 bits (406), Expect = 2e-52
 Identities = 67/116 (57%), Positives = 88/116 (75%), Gaps = 3/116 (2%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
           MNLI++IE E++   KK++P+F  GDT+ V++ + EG ++RIQ +EG+VI++R +GLNS 
Sbjct: 1   MNLIKEIEAEQL---KKDLPEFRVGDTVKVHVKIKEGNKERIQVFEGVVIAKRGRGLNST 57

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116
           F VRKIS   G+ER F L+SP I  I V RRG VRRAKLYYLR  SGK+ARIKEK 
Sbjct: 58  FTVRKISQGVGVERVFPLHSPRIDKIEVVRRGKVRRAKLYYLRDLSGKAARIKEKR 113

Length = 113

>gnl|CDD|223412 COG0335, RplS, Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

 Score =  151 bits (383), Expect = 9e-49
 Identities = 66/116 (56%), Positives = 92/116 (79%), Gaps = 3/116 (2%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
           + +IQ++EQE+I   KK+IP F  GDT+ V++ ++EG+++R+QA+EG+VI+RR +G++  
Sbjct: 3   IPIIQQLEQEQI---KKDIPSFRPGDTVRVHVKIVEGSKERVQAFEGVVIARRGRGISET 59

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116
           F VRKISY  G+ER F L+SP+I SI V RRG VRRAKLYYLR+  GK+ARIKEK 
Sbjct: 60  FTVRKISYGVGVERVFPLHSPLIESIEVVRRGKVRRAKLYYLRERRGKAARIKEKR 115

Length = 115

>gnl|CDD|130096 TIGR01024, rplS_bact, ribosomal protein L19, bacterial type

 Score =  143 bits (363), Expect = 7e-46
 Identities = 67/116 (57%), Positives = 88/116 (75%), Gaps = 3/116 (2%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
            NLI++IEQE   +LKK++PDF  GDT+ V++ ++EG ++RIQ +EG+VI+RR  G+   
Sbjct: 1   QNLIKQIEQE---QLKKDLPDFRVGDTVRVHVKIVEGKKERIQVFEGVVIARRGGGIGET 57

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116
           F VRKISY  G+ER F L+SP I SI V RRG VRRAKLYYLR+  GK+ARIKE+ 
Sbjct: 58  FTVRKISYGVGVERIFPLHSPNIDSIEVVRRGKVRRAKLYYLRERRGKAARIKERR 113

This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 113

>gnl|CDD|177023 CHL00084, rpl19, ribosomal protein L19

 Score =  113 bits (285), Expect = 7e-34
 Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 3/114 (2%)

Query: 2   NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNF 61
            L+++IE E +   KKN+P    GDT+ V + + EG ++R+Q YEG VI+++N GLN+  
Sbjct: 6   QLVKEIESEFL---KKNLPKIRVGDTVKVGVLIQEGNKERVQFYEGTVIAKKNSGLNTTI 62

Query: 62  IVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEK 115
            VRK+    G+ER F L+SP ++SI V RR  VRRAKLYYLR   GK+AR+K+K
Sbjct: 63  TVRKVFQGIGVERVFLLHSPKLASIEVLRRSKVRRAKLYYLRNRVGKAARLKQK 116

Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
PRK05338	116	rplS 50S ribosomal protein L19; Provisional	100.0
COG0335	115	RplS Ribosomal protein L19 [Translation, ribosomal	100.0
TIGR01024	113	rplS_bact ribosomal protein L19, bacterial type. T	100.0
CHL00084	117	rpl19 ribosomal protein L19	100.0
PF01245	113	Ribosomal_L19: Ribosomal protein L19; InterPro: IP	100.0
KOG1698|consensus	201		100.0
smart00743	61	Agenet Tudor-like domain present in plant sequence	87.2
PF05641	68	Agenet: Agenet domain; InterPro: IPR008395 This do	85.7

>PRK05338 rplS 50S ribosomal protein L19; Provisional

Probab=100.00  E-value=8.7e-55  Score=314.87  Aligned_cols=115  Identities=61%  Similarity=0.976  Sum_probs=112.6

Q ss_pred             CchHHHHHHHHHHHhcCCCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEeecC
Q psy3772           1 MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYS   80 (119)
Q Consensus         1 m~li~~~e~~~~~~~~~~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~l~S   80 (119)
                      |++|+.+|++|+   +.++|+|+|||||+|+++|.||+|+|+|.|+|+||+++++|+++||||||+++|+|||++||+||
T Consensus         1 ~~~i~~~~~~~~---~~~~p~f~~GD~V~V~~~i~eg~k~R~q~f~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~S   77 (116)
T PRK05338          1 MNLIKEIEAEQL---RKDIPEFRPGDTVRVHVKVVEGNKERIQAFEGVVIARRGRGLNETFTVRKISYGVGVERTFPLHS   77 (116)
T ss_pred             CcHHHHHHHHHh---hcCCCCcCCCCEEEEEEEEccCCceEeccEEEEEEEEeCCCCCceEEEEEcccCccEEEEecCCC
Confidence            899999999999   78999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccceEEEEEeccccccceeeecCCCCcceeeeeeccc
Q psy3772          81 PIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLLK  118 (119)
Q Consensus        81 P~I~~IeVl~~~kvrRakLyYLR~~~gK~arike~~~~  118 (119)
                      |.|++|+|+++|++|||||||||++.||+|||||+...
T Consensus        78 P~I~~IeV~r~gkvRRAKLyYLR~~~gK~arike~~~~  115 (116)
T PRK05338         78 PRIDSIEVVRRGKVRRAKLYYLRELRGKAARIKERRDA  115 (116)
T ss_pred             CcccEEEEEEecccchhheeeeccCcchhheeeeeccC
Confidence            99999999999999999999999999999999998764

>COG0335 RplS Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.4e-54  Score=312.40  Aligned_cols=112  Identities=61%  Similarity=1.020  Sum_probs=109.7

Q ss_pred             Cc--hHHHHHHHHHHHhcCCCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEee
Q psy3772           1 MN--LIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQL   78 (119)
Q Consensus         1 m~--li~~~e~~~~~~~~~~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~l   78 (119)
                      |+  +|+.+|++|+   +.++|+|+|||||+|++++.||+|+|+|.|+|+||+++|+|+++|||||++++|+|||++||+
T Consensus         1 m~~~~i~~le~~q~---~~~iP~f~~GDtvrv~vki~Eg~keR~Q~FeGvVia~r~~G~~~tftvRkis~G~GVEr~Fp~   77 (115)
T COG0335           1 MNIPIIQQLEQEQI---KKDIPSFRPGDTVRVHVKIVEGSKERVQAFEGVVIARRGRGISETFTVRKISYGVGVERVFPL   77 (115)
T ss_pred             CCcHHHHHHHHHHH---HhhCCCCCCCCEEEEEEEEEeCCeEEEeeeeEEEEEECCCCccceEEEEEeecCceEEEEeec
Confidence            66  8999999999   778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccceEEEEEeccccccceeeecCCCCcceeeeee
Q psy3772          79 YSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEK  115 (119)
Q Consensus        79 ~SP~I~~IeVl~~~kvrRakLyYLR~~~gK~arike~  115 (119)
                      |||.|++|||+++|+||||||||||++.||+|||||+
T Consensus        78 ~SP~Ie~IeV~rrGkVRRAKLYYLR~~~GKaArIke~  114 (115)
T COG0335          78 HSPLIESIEVVRRGKVRRAKLYYLRERRGKAARIKEK  114 (115)
T ss_pred             CCCceeEEEEEecCceeeeeeEeeecccccceeeeec
Confidence            9999999999999999999999999999999999996

>TIGR01024 rplS_bact ribosomal protein L19, bacterial type

Probab=100.00  E-value=2.4e-54  Score=311.39  Aligned_cols=112  Identities=59%  Similarity=0.972  Sum_probs=110.5

Q ss_pred             CchHHHHHHHHHHHhcCCCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEeecC
Q psy3772           1 MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYS   80 (119)
Q Consensus         1 m~li~~~e~~~~~~~~~~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~l~S   80 (119)
                      |++|+.+|++|+   +.++|+|+|||+|+|++++.||+|+|+|.|+|+||+++|+|+++||||||+++|+|||++||+||
T Consensus         1 m~~i~~~e~~~~---~~~ip~f~~GD~v~V~~~i~eg~k~R~q~f~GvvI~~~~~G~~~tftvR~i~~gvGVEr~fpl~S   77 (113)
T TIGR01024         1 QNLIKQIEQEQL---KKDLPDFRVGDTVRVHVKIVEGKKERIQVFEGVVIARRGGGIGETFTVRKISYGVGVERIFPLHS   77 (113)
T ss_pred             CcHHHHHHHHHh---hcCCCccCCCCEEEEEEEEccCCceEcccEEEEEEEEeCCCCceEEEEEEeccCccEEEEEEcCC
Confidence            899999999999   88999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccceEEEEEeccccccceeeecCCCCcceeeeee
Q psy3772          81 PIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEK  115 (119)
Q Consensus        81 P~I~~IeVl~~~kvrRakLyYLR~~~gK~arike~  115 (119)
                      |.|++|+|+++|++|||||||||++.||+|||||+
T Consensus        78 P~I~~IeVl~~~kvrRaKLyYLR~~~gK~arike~  112 (113)
T TIGR01024        78 PNIDSIEVVRRGKVRRAKLYYLRERRGKAARIKER  112 (113)
T ss_pred             CccceEEEEEeCccchhheeeeccCcchhheeeec
Confidence            99999999999999999999999999999999996

This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs.

>CHL00084 rpl19 ribosomal protein L19

Probab=100.00  E-value=4.1e-54  Score=311.74  Aligned_cols=112  Identities=50%  Similarity=0.800  Sum_probs=109.2

Q ss_pred             chHHHHHHHHHHHhcCCCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEeecCC
Q psy3772           2 NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSP   81 (119)
Q Consensus         2 ~li~~~e~~~~~~~~~~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~l~SP   81 (119)
                      ++|+.+|++|+   +.++|+|+|||||+|++++.||+|+|+|.|+|+||+++|+|+++||||||+++|+|||++||+|||
T Consensus         6 ~~i~~~~~~~~---~~~~p~f~~GDtV~V~~~i~eg~k~R~q~F~GvvI~~r~~G~~~tftvRki~~gvGVEr~fpl~SP   82 (117)
T CHL00084          6 QLVKEIESEFL---KKNLPKIRVGDTVKVGVLIQEGNKERVQFYEGTVIAKKNSGLNTTITVRKVFQGIGVERVFLLHSP   82 (117)
T ss_pred             HHHHHHHHHHh---hcCCCccCCCCEEEEEEEEecCCeeEeceEEEEEEEEeCCCCCeeEEEEEeccCccEEEEEecCCC
Confidence            57899999999   889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEEEEeccccccceeeecCCCCcceeeeeec
Q psy3772          82 IISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL  116 (119)
Q Consensus        82 ~I~~IeVl~~~kvrRakLyYLR~~~gK~arike~~  116 (119)
                      .|++|||+++|++|||||||||++.||+|||||++
T Consensus        83 ~I~~IeV~r~gkvRRAKLyYLR~~~gKaarike~~  117 (117)
T CHL00084         83 KLASIEVLRRSKVRRAKLYYLRNRVGKAARLKQKF  117 (117)
T ss_pred             ccceEEEEEeCccchheeEEeccCcChhheeeccC
Confidence            99999999999999999999999999999999964

>PF01245 Ribosomal_L19: Ribosomal protein L19; InterPro: IPR001857 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.6e-53  Score=306.70  Aligned_cols=113  Identities=60%  Similarity=0.984  Sum_probs=109.7

Q ss_pred             CchHHHHHHHHHHHhcCCCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEeecC
Q psy3772           1 MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYS   80 (119)
Q Consensus         1 m~li~~~e~~~~~~~~~~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~l~S   80 (119)
                      ||||+.+|++|+   +.++|+|+|||+|+|++.+.||+++|+|.|+|+||+++++|+++||||||+++|+|||++|||||
T Consensus         1 ~~~i~~~e~~~~---~~~~p~f~~GD~v~V~~~i~e~~k~r~q~f~GvvIa~~~~g~~ssftlR~~~~g~gVE~~f~l~S   77 (113)
T PF01245_consen    1 MNLIEEVEREQI---KKDIPEFRVGDTVRVTYKISEGNKERIQVFEGVVIARRRRGLNSSFTLRNISQGVGVERVFPLYS   77 (113)
T ss_dssp             -HHHHHHHHTTC---SSSSSSSSSSSEEEEEEEEESSSSEEEEEEEEEEEEEEBSSTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             ChHHHHHHHHHh---hcCCCCcCCCCEEEEEEEEecCCCceeEEEEEEEEEEECCCCCeeEEEEEEecCccEEEEEEcCC
Confidence            899999999998   89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccceEEEEEeccccccceeeecCCCCcceeeeeec
Q psy3772          81 PIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL  116 (119)
Q Consensus        81 P~I~~IeVl~~~kvrRakLyYLR~~~gK~arike~~  116 (119)
                      |.|++|+|++++++||||||||||++||+|||||+.
T Consensus        78 P~I~~IeV~~~~kvrRaKLyYLR~~~gK~arike~~  113 (113)
T PF01245_consen   78 PLIKSIEVLRRGKVRRAKLYYLRDRKGKAARIKEKR  113 (113)
T ss_dssp             TTEEEEEEEEEBECSSSSTGGGGCTTSHHHHHHBT-
T ss_pred             CCeEEEEEEEecccchhhhhhhhcCccchhhhcccC
Confidence            999999999999999999999999999999999963

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L19 is one of the proteins from the large ribosomal subunit [, ]. In Escherichia coli, L19 is known to be located at the 30S-50S ribosomal subunit interface [] and may play a role in the structure and function of the aminoacyl-tRNA binding site. It belongs to a family of ribosomal proteins, including L19 from bacteria and the chloroplasts of red algae. L19 is a protein of 120 to 130 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3HUZ_T 3V2D_T 3I8I_R 2XG2_T 2V49_T 2XUX_T 3HUX_T 3I9C_R 3V25_T 3UZ2_R ....

>KOG1698|consensus

Probab=100.00  E-value=6.5e-34  Score=221.14  Aligned_cols=107  Identities=34%  Similarity=0.659  Sum_probs=99.5

Q ss_pred             hHHHHHHHHHHHhc--CCCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEeecC
Q psy3772           3 LIQKIEQEEIIRLK--KNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYS   80 (119)
Q Consensus         3 li~~~e~~~~~~~~--~~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~l~S   80 (119)
                      +++.||.+++...+  .++|+|+|||+|+|++.+++ ++.++..|.|+||.+++.|+++||+|||+++|+|||..|||||
T Consensus        76 ~~e~Ldr~a~~~rr~~r~iPe~~~G~Iv~V~s~~p~-~k~k~s~f~Gi~I~R~~~Gl~atf~LRnvIagvGVEi~~pLYs  154 (201)
T KOG1698|consen   76 IMEILDRQAVLERRKVRDIPEFKVGSIVRVTSEDPE-NKRKVSRFKGICIRRRNAGLNATFLLRNVIAGVGVEIVFPLYS  154 (201)
T ss_pred             HHHhhCHHHHHHHHhcccCCccccccEEEEEecCCc-cCCceeEEEEEEEEecccCCcceEEeeehhhCceeEEEEeccC
Confidence            67888888886643  89999999999999999996 6999999999999999999999999999999999999999999


Q ss_pred             CccceEEEEEeccccccceeeecCCCCcce
Q psy3772          81 PIISSIIVKRRGDVRRAKLYYLRKCSGKSA  110 (119)
Q Consensus        81 P~I~~IeVl~~~kvrRakLyYLR~~~gK~a  110 (119)
                      |+|++|+|++..|++||+||||||......
T Consensus       155 P~IkeI~Vlk~~k~rra~LyYLRd~lp~ls  184 (201)
T KOG1698|consen  155 PNIKEIKVLKLEKRRRAKLYYLRDALPELS  184 (201)
T ss_pred             CCeeEEEEechhhcccchhhhhhccccccC
Confidence            999999999999999999999999877544

>smart00743 Agenet Tudor-like domain present in plant sequences

Probab=87.20  E-value=4.9  Score=24.71  Aligned_cols=50  Identities=24%  Similarity=0.393  Sum_probs=36.0

Q ss_pred             CCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEee
Q psy3772          20 PDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQL   78 (119)
Q Consensus        20 P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~l   78 (119)
                      +.|.+||.|.+.... ++     .=|.|+|++..+   +..+.|+=...+.|-+-.|+.
T Consensus         1 ~~~~~G~~Ve~~~~~-~~-----~W~~a~V~~~~~---~~~~~V~~~~~~~~~~e~v~~   50 (61)
T smart00743        1 SDFKKGDRVEVFSKE-ED-----SWWEAVVTKVLG---DGKYLVRYLTESEPLKETVDW   50 (61)
T ss_pred             CCcCCCCEEEEEECC-CC-----EEEEEEEEEECC---CCEEEEEECCCCcccEEEEeH
Confidence            468999999999853 23     589999999887   345777654444666666653

Domain in plant sequences with possible chromatin-associated functions.

>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []

Probab=85.70  E-value=2.9  Score=26.82  Aligned_cols=38  Identities=21%  Similarity=0.404  Sum_probs=25.3

Q ss_pred             CCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEE
Q psy3772          22 FVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRK   65 (119)
Q Consensus        22 f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~   65 (119)
                      |++||.|.|.... +|.  +-.=|.|.|+...+.+   ++.|+-
T Consensus         1 F~~G~~VEV~s~e-~g~--~gaWf~a~V~~~~~~~---~~~V~Y   38 (68)
T PF05641_consen    1 FKKGDEVEVSSDE-DGF--RGAWFPATVLKENGDD---KYLVEY   38 (68)
T ss_dssp             --TT-EEEEEE-S-BTT----EEEEEEEEEEETT----EEEEEE
T ss_pred             CCCCCEEEEEEcC-CCC--CcEEEEEEEEEeCCCc---EEEEEE
Confidence            7899999998753 343  6689999999999876   777765

The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	119
1vs6_P	115	Crystal Structure Of The Bacterial Ribosome From Es		8e-35
1p85_N	114	Real Space Refined Coordinates Of The 50s Subunit F		9e-35
1nkw_N	166	Crystal Structure Of The Large Ribosomal Subunit Fr		3e-25
1pnu_N	125	Crystal Structure Of A Streptomycin Dependent Ribos		5e-25
1vsa_N	146	Crystal Structure Of A 70s Ribosome-Trna Complex Re		9e-22
2j01_T	146	Structure Of The Thermus Thermophilus 70s Ribosome		1e-21
3pyo_P	137	Crystal Structure Of A Complex Containing Domain 3		1e-21
3fin_T	138	T. Thermophilus 70s Ribosome In Complex With Mrna,		2e-21
3tve_R	137	Crystal Structure Analysis Of Ribosomal Decoding. T		2e-21
3bbo_R	233	Homology Model For The Spinach Chloroplast 50s Subu		9e-13
2ftc_K	98	Structural Model For The Large Subunit Of The Mamma		3e-05

>pdb|1VS6|P Chain P, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 115

Iteration: 1
 Score =  141 bits (356), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 66/115 (57%), Positives = 95/115 (82%), Gaps = 3/115 (2%)
Query: 2   NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNF 61
           N+I+++EQE+   +K+++P F  GDT+ V + V+EG++KR+QA+EG+VI+ RN+GL+S F
Sbjct: 3   NIIKQLEQEQ---MKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAF 59
Query: 62  IVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116
            VRKIS  EG+ER FQ +SP++ SI VKRRG VR+AKLYYLR+ +GK+ARIKE+L
Sbjct: 60  TVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKERL 114

>pdb|1P85|N Chain N, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 114

Iteration: 1
 Score =  141 bits (355), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 66/115 (57%), Positives = 95/115 (82%), Gaps = 3/115 (2%)
Query: 2   NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNF 61
           N+I+++EQE+   +K+++P F  GDT+ V + V+EG++KR+QA+EG+VI+ RN+GL+S F
Sbjct: 2   NIIKQLEQEQ---MKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAF 58
Query: 62  IVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116
            VRKIS  EG+ER FQ +SP++ SI VKRRG VR+AKLYYLR+ +GK+ARIKE+L
Sbjct: 59  TVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKERL 113

>pdb|1NKW|N Chain N, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 166

Iteration: 1
 Score =  110 bits (274), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/111 (48%), Positives = 74/111 (66%), Gaps = 4/111 (3%)
Query: 3   LIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFI 62
           L++ IEQ+      + +PDF  GDT+ V+  V EG R R QA+EG+VI+    G   +F 
Sbjct: 12  LLRGIEQDHT----RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFT 67
Query: 63  VRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIK 113
           VRKIS+ EG+ER F   SP+++ + +  RG VRRAKLYYLR+  GK+ARIK
Sbjct: 68  VRKISFGEGVERVFPFASPLVNQVTIVERGKVRRAKLYYLRELRGKAARIK 118

>pdb|1PNU|N Chain N, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 125

Iteration: 1
 Score =  109 bits (272), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/111 (48%), Positives = 74/111 (66%), Gaps = 4/111 (3%)
Query: 3   LIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFI 62
           L++ IEQ+      + +PDF  GDT+ V+  V EG R R QA+EG+VI+    G   +F 
Sbjct: 11  LLRGIEQDHT----RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFT 66
Query: 63  VRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIK 113
           VRKIS+ EG+ER F   SP+++ + +  RG VRRAKLYYLR+  GK+ARIK
Sbjct: 67  VRKISFGEGVERVFPFASPLVNQVTIVERGKVRRAKLYYLRELRGKAARIK 117

>pdb|1VSA|N Chain N, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 Length = 146

Iteration: 1
 Score = 98.2 bits (243), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 66/99 (66%)
Query: 15  LKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIER 74
           ++ ++P+F  GDT+ V+  V EG R RIQ +EGIVI  R  G N+ F VRK+SY  G+ER
Sbjct: 15  VRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVER 74
Query: 75  TFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIK 113
            F L+SP+I  I + +RG  RRAKLY++R  S +  R K
Sbjct: 75  IFPLHSPLIQKIDIVQRGRARRAKLYFIRNLSDREIRRK 113

>pdb|2J01|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 146

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 66/99 (66%)
Query: 15  LKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIER 74
           ++ ++P+F  GDT+ V+  V EG R RIQ +EGIVI  R  G N+ F VRK+SY  G+ER
Sbjct: 15  VRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVER 74
Query: 75  TFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIK 113
            F L+SP+I  I + +RG  RRAKLY++R  S +  R K
Sbjct: 75  IFPLHSPLIQKIDIVQRGRARRAKLYFIRNLSDREIRRK 113

>pdb|3PYO|P Chain P, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 137

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 66/99 (66%)
Query: 15  LKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIER 74
           ++ ++P+F  GDT+ V+  V EG R RIQ +EGIVI  R  G N+ F VRK+SY  G+ER
Sbjct: 15  VRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVER 74
Query: 75  TFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIK 113
            F L+SP+I  I + +RG  RRAKLY++R  S +  R K
Sbjct: 75  IFPLHSPLIQKIDIVQRGRARRAKLYFIRNLSDREIRRK 113

>pdb|3FIN|T Chain T, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 138

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 69/105 (65%)
Query: 15  LKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIER 74
           ++ ++P+F  GDT+ V+  V EG R RIQ +EGIVI  R  G N+ F VRK+SY  G+ER
Sbjct: 15  VRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVER 74
Query: 75  TFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLLKK 119
            F L+SP+I  I + +RG  RRAKLY++R  S +  R K +  +K
Sbjct: 75  IFPLHSPLIQKIDIVQRGRARRAKLYFIRNLSDREIRRKLRADRK 119

>pdb|3TVE|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit For The Cognate Trna-Leu Complex Length = 137

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 69/105 (65%)
Query: 15  LKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIER 74
           ++ ++P+F  GDT+ V+  V EG R RIQ +EGIVI  R  G N+ F VRK+SY  G+ER
Sbjct: 15  VRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVER 74
Query: 75  TFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLLKK 119
            F L+SP+I  I + +RG  RRAKLY++R  S +  R K +  +K
Sbjct: 75  IFPLHSPLIQKIDIVQRGRARRAKLYFIRNLSDREIRRKLRADRK 119

>pdb|3BBO|R Chain R, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 233

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 17  KNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTF 76
           + +P   TGD + + L V E  R R+  Y+GIVISR+N G+++   +R+I    G+E  F
Sbjct: 138 RPVPGIRTGDIVQIRLEVPENKR-RLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVF 196
Query: 77  QLYSPIISSIIVKRRGDVRRAKLYYLR 103
            LYSP I  I V     VR+A+LYYLR
Sbjct: 197 PLYSPNIKEIKVVSHRKVRKARLYYLR 223

>pdb|2FTC|K Chain K, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 98

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 19  IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQL 78
           IP+F  G  + V       + K I  + GI I R  +GL + FI+R +   +G+E  F+L
Sbjct: 1   IPEFYVGSILRVTTADPYASGK-ISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFEL 59
Query: 79  YSPIISSIIVKRRGDVRRAKLYYLR 103
           Y+P +  I V +        L YLR
Sbjct: 60  YNPRVQEIQVVKLEKRLDDSLLYLR 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
3r8s_P	114	50S ribosomal protein L19; protein biosynthesis, R	5e-57
3v2d_T	146	50S ribosomal protein L19; ribosome associated inh	2e-55
3bbo_R	233	Ribosomal protein L19; large ribosomal subunit, sp	9e-54
2zjr_M	166	50S ribosomal protein L19; ribosome, large ribosom	2e-53
2ftc_K	98	39S ribosomal protein L19, mitochondrial; mitochon	2e-46

>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ... Length = 114

 Score =  171 bits (435), Expect = 5e-57
 Identities = 66/115 (57%), Positives = 95/115 (82%), Gaps = 3/115 (2%)

Query: 2   NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNF 61
           N+I+++EQE+   +K+++P F  GDT+ V + V+EG++KR+QA+EG+VI+ RN+GL+S F
Sbjct: 2   NIIKQLEQEQ---MKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAF 58

Query: 62  IVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116
            VRKIS  EG+ER FQ +SP++ SI VKRRG VR+AKLYYLR+ +GK+ARIKE+L
Sbjct: 59  TVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKERL 113

>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ... Length = 146

 Score =  168 bits (428), Expect = 2e-55
 Identities = 52/119 (43%), Positives = 74/119 (62%), Gaps = 3/119 (2%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
             LI+ +E      ++ ++P+F  GDT+ V+  V EG R RIQ +EGIVI  R  G N+ 
Sbjct: 4   GALIKLVESRY---VRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTT 60

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLLKK 119
           F VRK+SY  G+ER F L+SP+I  I + +RG  RRAKLY++R  S +  R K +  +K
Sbjct: 61  FTVRKVSYGVGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRNLSDREIRRKLRADRK 119

>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 233

 Score =  167 bits (423), Expect = 9e-54
 Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 3/115 (2%)

Query: 1   MNLIQKIEQEEI--IRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLN 58
            +++  + ++ +      + +P   TGD + + L V E  ++R+  Y+GIVISR+N G++
Sbjct: 120 GDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPEN-KRRLSVYKGIVISRQNAGIH 178

Query: 59  SNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIK 113
           +   +R+I    G+E  F LYSP I  I V     VR+A+LYYLR    + +  K
Sbjct: 179 TTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 233

>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q Length = 166

 Score =  164 bits (416), Expect = 2e-53
 Identities = 54/119 (45%), Positives = 75/119 (63%), Gaps = 4/119 (3%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
             L++ IEQ+      + +PDF  GDT+ V+  V EG R R QA+EG+VI+    G   +
Sbjct: 10  GELLRGIEQDHT----RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKS 65

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLLKK 119
           F VRKIS+ EG+ER F   SP+++ + +  RG VRRAKLYYLR+  GK+ARIK    + 
Sbjct: 66  FTVRKISFGEGVERVFPFASPLVNQVTIVERGKVRRAKLYYLRELRGKAARIKSDRSRV 124

>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 98

 Score =  144 bits (365), Expect = 2e-46
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 1/98 (1%)

Query: 19  IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQL 78
           IP+F  G  + V          +I  + GI I R  +GL + FI+R +   +G+E  F+L
Sbjct: 1   IPEFYVGSILRVTTADPYA-SGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFEL 59

Query: 79  YSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116
           Y+P +  I V +        L YLR    + +     +
Sbjct: 60  YNPRVQEIQVVKLEKRLDDSLLYLRDALPEYSTFDVNM 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
3r8s_P	114	50S ribosomal protein L19; protein biosynthesis, R	100.0
2zjr_M	166	50S ribosomal protein L19; ribosome, large ribosom	100.0
3v2d_T	146	50S ribosomal protein L19; ribosome associated inh	100.0
2ftc_K	98	39S ribosomal protein L19, mitochondrial; mitochon	100.0
3bbo_R	233	Ribosomal protein L19; large ribosomal subunit, sp	100.0
2vc8_A	84	Enhancer of mRNA-decapping protein 3; P-BODY compo	82.11
3p8d_A	67	Medulloblastoma antigen MU-MB-50.72; tudor domain,	81.82

>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...

Probab=100.00  E-value=9.2e-57  Score=323.23  Aligned_cols=112  Identities=59%  Similarity=0.984  Sum_probs=110.2

Q ss_pred             chHHHHHHHHHHHhcCCCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEeecCC
Q psy3772           2 NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSP   81 (119)
Q Consensus         2 ~li~~~e~~~~~~~~~~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~l~SP   81 (119)
                      |||+.+|++||   +.|+|+|+|||||+|++++.||+++|+|.|+|+||+++|+|+++||||||+++|+|||++||+|||
T Consensus         2 ~~i~~~e~~~~---~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP   78 (114)
T 3r8s_P            2 NIIKQLEQEQM---KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSP   78 (114)
T ss_dssp             CHHHHHHGGGC---CSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEETTCT
T ss_pred             hHHHHHHHHHh---ccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEecCCC
Confidence            79999999999   899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEEEEeccccccceeeecCCCCcceeeeeec
Q psy3772          82 IISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL  116 (119)
Q Consensus        82 ~I~~IeVl~~~kvrRakLyYLR~~~gK~arike~~  116 (119)
                      .|++|||+++|++||||||||||+.||||||||+.
T Consensus        79 ~I~~IeV~r~gkvRRAKLyYLR~~~GKaarike~~  113 (114)
T 3r8s_P           79 VVDSISVKRRGAVRKAKLYYLRERTGKAARIKERL  113 (114)
T ss_dssp             TEEEEEEEECEECCSSCCGGGTTCCHHHHCCEECC
T ss_pred             ccceEEEEEccccchhheeeecCCcchHHhhhhhh
Confidence            99999999999999999999999999999999975

>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q

Probab=100.00  E-value=9e-56  Score=334.75  Aligned_cols=117  Identities=44%  Similarity=0.719  Sum_probs=100.1

Q ss_pred             CchHHHHHHHHHHHh-cCCCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEeec
Q psy3772           1 MNLIQKIEQEEIIRL-KKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLY   79 (119)
Q Consensus         1 m~li~~~e~~~~~~~-~~~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~l~   79 (119)
                      ||+|+.||++|+.++ +.++|+|+|||||+|++++.||+++|+|.|+|+||+++|+|+++||||||+++|+|||++||||
T Consensus         5 M~li~~le~eqlk~l~~~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~Fplh   84 (166)
T 2zjr_M            5 IKINRGELLRGIEQDHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPFA   84 (166)
T ss_dssp             CCCCHHHHHHHTTGGGCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEETT
T ss_pred             HHHHHHHHHHHHhhccccCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEecCCeeEEEEEecC
Confidence            789999999999322 2799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccceEEEEEeccccccceeeecCCCCcceeeeeecc
Q psy3772          80 SPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLL  117 (119)
Q Consensus        80 SP~I~~IeVl~~~kvrRakLyYLR~~~gK~arike~~~  117 (119)
                      ||.|++|||+++|||||||||||||+.||+|||||+..
T Consensus        85 SP~I~kIEVvrrGKVRRAKLYYLRd~~GKaARIke~~~  122 (166)
T 2zjr_M           85 SPLVNQVTIVERGKVRRAKLYYLRELRGKAARIKSDRS  122 (166)
T ss_dssp             CTTEEEEEEEECCCCSSSCCGGGCC-------------
T ss_pred             CCccceEEEEeccccchhheeeccCCCCchhheehhhc
Confidence            99999999999999999999999999999999999753

>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...

Probab=100.00  E-value=1.7e-54  Score=322.12  Aligned_cols=112  Identities=45%  Similarity=0.797  Sum_probs=109.6

Q ss_pred             chHHHHHHHHHHHhcCCCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEeecCC
Q psy3772           2 NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSP   81 (119)
Q Consensus         2 ~li~~~e~~~~~~~~~~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~l~SP   81 (119)
                      +||+.+|++|+   +.++|+|+|||||+|++++.||+++|+|.|+|+||+++|+|+++||||||+++|+|||++||||||
T Consensus         5 ~li~~ie~~~~---~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRkis~gvGVEr~Fpl~SP   81 (146)
T 3v2d_T            5 ALIKLVESRYV---RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPLHSP   81 (146)
T ss_dssp             HHHHHHHHTTC---CCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEETTCT
T ss_pred             HHHHHHHHHHh---hccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEecCCC
Confidence            48999999999   899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEEEEeccccccceeeecCCCCccee--eeeec
Q psy3772          82 IISSIIVKRRGDVRRAKLYYLRKCSGKSAR--IKEKL  116 (119)
Q Consensus        82 ~I~~IeVl~~~kvrRakLyYLR~~~gK~ar--ike~~  116 (119)
                      .|++|||+++|+|||||||||||+.||+||  |||+.
T Consensus        82 ~I~~IeVvrrgkVRRAKLYYLR~~~GKaar~~ike~~  118 (146)
T 3v2d_T           82 LIQKIDIVQRGRARRAKLYFIRNLSDREIRRKLRADR  118 (146)
T ss_dssp             TEEEEEEEECEECSSSCCGGGGGCCHHHHHHHSEECH
T ss_pred             ccceEEEEecCccchhheeeccCCcchhHHHHHHHHH
Confidence            999999999999999999999999999999  99975

>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}

Probab=100.00  E-value=1.2e-47  Score=269.71  Aligned_cols=94  Identities=29%  Similarity=0.503  Sum_probs=91.5

Q ss_pred             CCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEeecCCccceEEEEEeccccccc
Q psy3772          19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAK   98 (119)
Q Consensus        19 ~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~l~SP~I~~IeVl~~~kvrRak   98 (119)
                      +|+|+|||||+|++++. |+++|+|.|+|+||+++|+|+++||||||+++|+|||++||+|||.|++|||+++||+||||
T Consensus         1 iP~f~~GDtv~V~~~i~-g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~gkvRRaK   79 (98)
T 2ftc_K            1 IPEFYVGSILRVTTADP-YASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLEKRLDDS   79 (98)
T ss_pred             CCccCCCCEEEEEEEEC-CCceEeeeEEEEEEEEECCCCCcEEEEEEeccCceEEEEEecCCCceeEEEEEEcCccccee
Confidence            69999999999999999 78999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecCCCCcceeee
Q psy3772          99 LYYLRKCSGKSARIK  113 (119)
Q Consensus        99 LyYLR~~~gK~arik  113 (119)
                      ||||||+++|.+.+.
T Consensus        80 LyYLR~~~~~~st~~   94 (98)
T 2ftc_K           80 LLYLRDALPEYSTFD   94 (98)
T ss_pred             EEEeccCCcccceec
Confidence            999999999988764

>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=9e-45  Score=285.64  Aligned_cols=103  Identities=37%  Similarity=0.643  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEeecCCccc
Q psy3772           5 QKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIIS   84 (119)
Q Consensus         5 ~~~e~~~~~~~~~~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~l~SP~I~   84 (119)
                      +.+|++|+   ++++|+|+|||||+|++++.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||||||.|+
T Consensus       129 e~ie~~q~---kkdiPeFr~GDtV~V~vkI~E-~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~FpLhSP~I~  204 (233)
T 3bbo_R          129 KAVHAAEE---LRPVPGIRTGDIVQIRLEVPE-NKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIK  204 (233)
T ss_dssp             THHHHTTC---CSCCSSSCCCSCCCCCCCBCC-CSSCCSCCBCCCCCSCBCCCSSSCBCBCCCCCSTTTCCCCCBSSSSS
T ss_pred             HHHHHHhh---ccCCCccCCCCEEEEEEEecc-CcceecceEEEEEEEeCCCCCceEEEEEecCCceEEEEEecCCCccc
Confidence            45666665   789999999999999999999 89999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeccccccceeeecCCCCccee
Q psy3772          85 SIIVKRRGDVRRAKLYYLRKCSGKSAR  111 (119)
Q Consensus        85 ~IeVl~~~kvrRakLyYLR~~~gK~ar  111 (119)
                      +|||+++|||||||||||||+.+....
T Consensus       205 kIEVvRrgKVRRAKLYYLRd~lp~~ST  231 (233)
T 3bbo_R          205 EIKVVSHRKVRKARLYYLRDKLPRLST  231 (233)
T ss_dssp             CCCCCCCSCCCCSCSSCCCCSSTTCSS
T ss_pred             eEEEEeccccchhhhhhhhcCCccccc
Confidence            999999999999999999999987543

>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}

Probab=82.11  E-value=2.5  Score=28.42  Aligned_cols=58  Identities=17%  Similarity=0.263  Sum_probs=40.2

Q ss_pred             CCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeE-----EEEEeecCCccceEEEEEe
Q psy3772          23 VTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGI-----ERTFQLYSPIISSIIVKRR   91 (119)
Q Consensus        23 ~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGV-----Er~f~l~SP~I~~IeVl~~   91 (119)
                      ..|+.|.++-...      +-.|+|.+..+.-  .+.|+||+|.+ ..|+     |.+|  -.--|++++++.-
T Consensus         7 ~iGs~VSi~c~d~------lGvYQG~i~~vd~--~~~tItL~~~f-~NG~~~~s~eVtl--s~~DI~~L~ii~~   69 (84)
T 2vc8_A            7 WLGSIVSINCGDS------LGVYQGRVSAVDQ--VSQTISLTRPF-HNGVKCLVPEVTF--RAGDITELKILEI   69 (84)
T ss_dssp             TTTCEEEEECCTT------TCEEEEEEEEEET--TTTEEEEEEEE-ETTEECSSSEEEE--EGGGCSEEEEEEC
T ss_pred             ccCCEEEEEECCC------ceEEEEEEEEecc--CCCeEEEehhh-hCCCCCCCcEEEE--EecChhheEEEec
Confidence            5689998886432      3499999999875  35789999986 3344     3333  2335788888765

>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}

Probab=81.82  E-value=6.7  Score=25.01  Aligned_cols=46  Identities=17%  Similarity=0.424  Sum_probs=34.6

Q ss_pred             CCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEe
Q psy3772          19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQ   77 (119)
Q Consensus        19 ~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~   77 (119)
                      .|.|.+||.|.-.+  ..+     +.|.+.|.++.+.+   +++|.  +.+ |.+.+-.
T Consensus         4 ~~~~~vGd~vmArW--~D~-----~yYpA~I~si~~~~---~Y~V~--F~d-G~~etvk   49 (67)
T 3p8d_A            4 SSEFQINEQVLACW--SDC-----RFYPAKVTAVNKDG---TYTVK--FYD-GVVQTVK   49 (67)
T ss_dssp             -CCCCTTCEEEEEC--TTS-----CEEEEEEEEECTTS---EEEEE--ETT-SCEEEEE
T ss_pred             CcccccCCEEEEEc--CCC-----CEeeEEEEEECCCC---eEEEE--EeC-CceEEEe
Confidence            68899999999997  333     69999999999874   58873  455 7665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	119
d2gycn1	114	b.34.5.6 (N:1-114) Ribosomal protein L19 {Escheric	2e-40
d2j01t1	138	b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus	2e-35
d2zjrm1	108	b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococ	2e-34

>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]} Length = 114

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Escherichia coli [TaxId: 562]

 Score =  128 bits (322), Expect = 2e-40
 Identities = 66/115 (57%), Positives = 95/115 (82%), Gaps = 3/115 (2%)

Query: 2   NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNF 61
           N+I+++EQE+   +K+++P F  GDT+ V + V+EG++KR+QA+EG+VI+ RN+GL+S F
Sbjct: 2   NIIKQLEQEQ---MKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAF 58

Query: 62  IVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKL 116
            VRKIS  EG+ER FQ +SP++ SI VKRRG VR+AKLYYLR+ +GK+ARIKE+L
Sbjct: 59  TVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKERL 113

>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]} Length = 138

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Thermus thermophilus [TaxId: 274]

 Score =  116 bits (292), Expect = 2e-35
 Identities = 53/119 (44%), Positives = 74/119 (62%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
           MN    I+  E   ++ ++P+F  GDT+ V+  V EG R RIQ +EGIVI  R  G N+ 
Sbjct: 1   MNRGALIKLVESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTT 60

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLLKK 119
           F VRK+SY  G+ER F L+SP+I  I + +RG  RRAKLY++R  S +  R K +  +K
Sbjct: 61  FTVRKVSYGVGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRNLSDREIRRKLRADRK 119

>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]} Length = 108

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Deinococcus radiodurans [TaxId: 1299]

 Score =  112 bits (282), Expect = 2e-34
 Identities = 48/104 (46%), Positives = 67/104 (64%), Gaps = 4/104 (3%)

Query: 1   MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
             L++ IEQ+      + +PDF  GDT+ V+  V EG R R QA+EG+VI+    G   +
Sbjct: 9   GELLRGIEQDHT----RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKS 64

Query: 61  FIVRKISYNEGIERTFQLYSPIISSIIVKRRGDVRRAKLYYLRK 104
           F VRKIS+ EG+ER F   SP+++ + +  RG VRRAKLYYLR+
Sbjct: 65  FTVRKISFGEGVERVFPFASPLVNQVTIVERGKVRRAKLYYLRE 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d2gycn1	114	Ribosomal protein L19 {Escherichia coli [TaxId: 56	100.0
d2j01t1	138	Ribosomal protein L19 {Thermus thermophilus [TaxId	100.0
d2zjrm1	108	Ribosomal protein L19 {Deinococcus radiodurans [Ta	100.0
d1zq1a1	74	Glutamyl-tRNA(Gln) amidotransferase subunit D, Gat	94.48
d1nz9a_	58	N-utilization substance G protein NusG, C-terminal	82.14

>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6e-57  Score=322.55  Aligned_cols=113  Identities=58%  Similarity=0.967  Sum_probs=110.5

Q ss_pred             chHHHHHHHHHHHhcCCCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEeecCC
Q psy3772           2 NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSP   81 (119)
Q Consensus         2 ~li~~~e~~~~~~~~~~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~l~SP   81 (119)
                      |||+.+|++|+   ++++|+|+|||||+|++++.||+|+|+|.|+|+||+++|+|+++||||||+++|+|||++||||||
T Consensus         2 nli~~ie~~q~---k~~iP~f~~GDtV~V~~~i~eg~K~RiQ~feGvvIa~k~~G~~~tftvRki~~GvGVEr~fpl~SP   78 (114)
T d2gycn1           2 NIIKQLEQEQM---KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSP   78 (114)
T ss_dssp             CTTTSSSSSTT---CCCCCCSCCCTTCCCCCCCCCCSSSSCCCCCCCCCCSCBCCCSSSCCCBCCCCCSSSCCCCCCCSS
T ss_pred             hHHHHHHHHHh---hccCCCcCCCCEEEEEEEEccCCcceeeEEEEEEEEEeCCCcceEEEEEEecCCccEEEEEEeCCC
Confidence            79999999999   889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEEEEeccccccceeeecCCCCcceeeeeecc
Q psy3772          82 IISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLL  117 (119)
Q Consensus        82 ~I~~IeVl~~~kvrRakLyYLR~~~gK~arike~~~  117 (119)
                      +|++|||+++|||||||||||||++||+|||||+++
T Consensus        79 ~I~~IeV~~~~kvRRaKLyYLR~~~gk~arike~~~  114 (114)
T d2gycn1          79 VVDSISVKRRGAVRKAKLYYLRERTGKAARIKERLN  114 (114)
T ss_dssp             CTTCCCCCCCSCCCCSCTTCCCCSSSCCCTTTTTCC
T ss_pred             CcceeEEeccCceehhheeeeccCcchHHhhhhhcC
Confidence            999999999999999999999999999999999763

>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.2e-54  Score=316.19  Aligned_cols=112  Identities=46%  Similarity=0.773  Sum_probs=109.4

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEeecCCc
Q psy3772           3 LIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPI   82 (119)
Q Consensus         3 li~~~e~~~~~~~~~~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~l~SP~   82 (119)
                      ||+.+|++|+   +.++|+|+|||||+|++.|.||+++|+|.|+|+||+++++|+++||||||+++|+|||++||||||+
T Consensus         6 Li~~iE~~~~---k~~iP~fr~GDtV~V~~~i~Eg~k~RiQ~f~GvvI~~~~~g~~~tftvRki~~gvGVEr~fpl~SP~   82 (138)
T d2j01t1           6 LIKLVESRYV---RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPLHSPL   82 (138)
T ss_dssp             HHHHHHCCCC---CSCSCCCCSSCBBCCCCCCBTTBSCCCCCCBCEEEEEECCSSSCEEEEEEEETTEEEEEEECSSSSC
T ss_pred             HHHHHHHHhh---cccCCCcCCCCEEEEEEEEcCCCceEEEEEEEEEEEEeCCCcceEEEEEEEecCccEEEEEeccCCC
Confidence            6999999998   8899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEEeccccccceeeecCCCCcceeeeeecc
Q psy3772          83 ISSIIVKRRGDVRRAKLYYLRKCSGKSARIKEKLL  117 (119)
Q Consensus        83 I~~IeVl~~~kvrRakLyYLR~~~gK~arike~~~  117 (119)
                      |++|+|+++|+|||||||||||+.||+|||||+..
T Consensus        83 I~~IeVvr~gkvRRAKLyYLR~~~gk~arike~~~  117 (138)
T d2j01t1          83 IQKIDIVQRGRARRAKLYFIRNLSDREIRRKLRAD  117 (138)
T ss_dssp             SCCCBCCCCBCCSSSSCGGGSSSCSSSHHHHSBCC
T ss_pred             ccceEEeecCceehhheeehhhccchhhhhhhhhc
Confidence            99999999999999999999999999999999864

>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=1.5e-50  Score=286.92  Aligned_cols=100  Identities=48%  Similarity=0.848  Sum_probs=96.1

Q ss_pred             CchHHHHHHHHHHHhcCCCCCCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecCeeEEEEEeecC
Q psy3772           1 MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYS   80 (119)
Q Consensus         1 m~li~~~e~~~~~~~~~~~P~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~gvGVEr~f~l~S   80 (119)
                      |+||+.+|++++   + ++|+|+|||||+|++++.||+|+|+|.|+|+||+++|+|+++||||||+++|+|||++|||||
T Consensus         9 ~~li~~ie~~~~---k-~iP~f~~GDtV~V~~~i~Eg~k~RiQ~FeGvvI~~~~~g~~~tftvRki~~g~GVEr~fpl~S   84 (108)
T d2zjrm1           9 GELLRGIEQDHT---R-QLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPFAS   84 (108)
T ss_dssp             HHHHHHTTGGGC---C-CCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEETTC
T ss_pred             HHHHHHHHHHhC---c-CCCCcCCCCEEEEEEEEcCCCccceEEEEEEEEEEeCCCccceEEEEEEecCccEEEEEEcCC
Confidence            358889988876   4 899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccceEEEEEeccccccceeeecC
Q psy3772          81 PIISSIIVKRRGDVRRAKLYYLRK  104 (119)
Q Consensus        81 P~I~~IeVl~~~kvrRakLyYLR~  104 (119)
                      |+|++|||+++||+||||||||||
T Consensus        85 P~i~~IeV~r~~kvRRakLyYLRd  108 (108)
T d2zjrm1          85 PLVNQVTIVERGKVRRAKLYYLRE  108 (108)
T ss_dssp             TTEEEEEEEECCCCSSSCCGGGCC
T ss_pred             CCccEEEEEEecceeeeeeeeecC
Confidence            999999999999999999999997

>d1zq1a1 b.38.3.1 (A:2-75) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}

class: All beta proteins
fold: Sm-like fold
superfamily: GatD N-terminal domain-like
family: GatD N-terminal domain-like
domain: Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD
species: Pyrococcus abyssi [TaxId: 29292]

Probab=94.48  E-value=0.031  Score=35.31  Aligned_cols=63  Identities=21%  Similarity=0.284  Sum_probs=42.5

Q ss_pred             CCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEEEEeecC--eeEEEEEeecCCccceEEEEEeccc
Q psy3772          21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYN--EGIERTFQLYSPIISSIIVKRRGDV   94 (119)
Q Consensus        21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftlR~i~~g--vGVEr~f~l~SP~I~~IeVl~~~kv   94 (119)
                      .+.|||.|+|...-..|    -..|+|+++-.-..+-...++| ++.+|  +|+.      .-.|++||++.++++
T Consensus        10 ~~~~GD~Vri~~~~~~~----~~~~eGilmP~~e~s~~~~ivl-KL~nGYNiGi~------~~~i~~ievlek~kv   74 (74)
T d1zq1a1          10 NINVGDFVRITKEEDGE----EVTYEGYIMPPYELSAGDTLVL-KLENGYNIGIA------LEKIRRIEVLERAKV   74 (74)
T ss_dssp             TCCTTCEEEEEEESSSS----EEECCEEECCCCTTCCCSEEEE-EETTSCEEEEE------GGGEEEEEEEECCCC
T ss_pred             CCCCCCEEEEEEecCCC----ceEEEEEEcCCcccCCCCEEEE-EecCceeeccc------hhHeeEEEEEeeccC
Confidence            57899999998753212    1489999998754333445555 55555  5543      357889999988764

>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: N-utilization substance G protein NusG, C-terminal domain
domain: N-utilization substance G protein NusG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=82.14  E-value=0.95  Score=26.40  Aligned_cols=36  Identities=22%  Similarity=0.359  Sum_probs=25.7

Q ss_pred             CCCCCCEEEEEEEEecCCccccceEEEEEEEEecCCCceeEEE
Q psy3772          21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIV   63 (119)
Q Consensus        21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvI~~r~~g~~~tftl   63 (119)
                      +|.+||.|+|.    +|.   .+-|+|.|..+....-..++.|
T Consensus         4 ~F~~Gd~V~I~----~Gp---F~g~~g~V~~i~~~k~rv~V~v   39 (58)
T d1nz9a_           4 AFREGDQVRVV----SGP---FADFTGTVTEINPERGKVKVMV   39 (58)
T ss_dssp             SCCTTCEEEEC----SGG---GTTCEEEEEEEETTTTEEEEEE
T ss_pred             cccCCCEEEEe----ccC---CCCCEEEEEEEcCCCCEEEEEE
Confidence            69999999885    454   5689999998875433444444