Psyllid ID: psy3819

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MPGYDRCTYPILPNRSEEDCECPRVGLGECPLVVYLPYFTKQVRRGLRVSQGGTGCTYPILPNRSEEDCECPRVGLGECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGSR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEEEcccccHHccccEEEccccccccccccccccHHccccccccccccccccEEEEcccccccccccccccEEEEcccccccEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccEEEEEcHHHHHEEcccEEccccccccccccccccccccccccccccccccccEEEEEcccccEccccccccEEEcccccEEEccccccccc
Coil and Loop (DISEMBL)
mpgydrctypilpnrseedcecprvglgecplvvylpyftkqvrrglrvsqggtgctypilpnrseedcecprvglgecplvtsaiitddgiginpqqtaGTVFMkhgcelrliprdrvgsr
Flexible Loop (DISEMBL)
mpgydrctypilpnrseedceCPRVGLGECPLVVYLPYFTKQVrrglrvsqggtgctypilpnrseEDCECPRVGLGECPLVTSAIITDDGIGINPQQTAGTvfmkhgcelrliprdrvgsr
Low Complexity Region (SEG)
MPGYDRCTYPILPNRSEEDCECPRVGLGECPLVVYLPYFTKQVRRGLRVSQGGTGCTYPILPNRSEEDCECPRVGLGECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGSR
Disordered region (IsUnstruct)
**********************PRVGLGECPLVVYLPYFTKQVRRGLRVSQGGTGCTYPI************RVGLGECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLI********
Disordered Region (DISOPRED)
****DRCTYPILPNRSEEDCECPRVGLGECPLVVYLPYFTKQ**************TYPILPNRSEEDCECPRVGLGECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRD*****
Disordered Region (DISEMBL)
MPGYDRCTYPILPNRSEEDCECPRVGLGECPLVVYLPYFTKQVRRGLRVSQGGTGCTYPILPNRSEEDCECPRVGLGECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGSR
Disordered Region (DISPRO)
**GYDRCTYPILPNRSEEDCECPRVGLGECPLVVYLPYFTKQVRRGLRVSQGGTGCTYPILPNRSEEDCECPRVGLGECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPR******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPGYDRCTYPILPNRSEEDCECPRVGLGECPLVVYLPYFTKQVRRGLRVSQGGTGCTYPILPNRSEEDCECPRVGLGECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
Q176V0	86	Ubiquitin-fold modifier 1	N/A	N/A	0.368	0.523	0.822	2e-15
Q7PXE2	88	Ubiquitin-fold modifier 1	yes	N/A	0.368	0.511	0.844	3e-15
Q5BJP3	85	Ubiquitin-fold modifier 1	yes	N/A	0.360	0.517	0.795	2e-14
B0WK43	85	Ubiquitin-fold modifier 1	N/A	N/A	0.344	0.494	0.857	2e-14
A8D888	98	Ubiquitin-fold modifier 1	N/A	N/A	0.344	0.428	0.833	2e-14
Q5PU89	99	Ubiquitin-fold modifier 1	N/A	N/A	0.352	0.434	0.790	3e-14
A8DYH2	87	Ubiquitin-fold modifier 1	yes	N/A	0.368	0.517	0.777	3e-14
B4LP65	84	Ubiquitin-fold modifier 1	N/A	N/A	0.352	0.511	0.813	3e-14
B4KSR4	84	Ubiquitin-fold modifier 1	N/A	N/A	0.352	0.511	0.813	3e-14
B9ENM6	100	Ubiquitin-fold modifier 1	N/A	N/A	0.368	0.45	0.755	3e-14

>sp|Q176V0|UFM1_AEDAE Ubiquitin-fold modifier 1 OS=Aedes aegypti GN=AAEL006251 PE=3 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 39/45 (86%)

Query: 78  ECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGSR 122
           + P  TSAIITDDGIGINPQQTAG VF+KHG ELRLIPRDRVGS 
Sbjct: 42  KVPPATSAIITDDGIGINPQQTAGNVFLKHGSELRLIPRDRVGSH 86

Ubiquitin-like modifier protein which binds to a number of as yet unidentified target proteins.
Aedes aegypti (taxid: 7159)

>sp|Q7PXE2|UFM1_ANOGA Ubiquitin-fold modifier 1 OS=Anopheles gambiae GN=AGAP001364 PE=3 SV=3

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/45 (84%), Positives = 40/45 (88%)

Query: 78  ECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGSR 122
           + P  TSAIITDDGIGINPQQTAGTVF+KHG ELRLIPRDRVG R
Sbjct: 43  KVPPATSAIITDDGIGINPQQTAGTVFLKHGSELRLIPRDRVGCR 87

Ubiquitin-like modifier protein which binds to a number of as yet unidentified target proteins.

Anopheles gambiae (taxid: 7165)

>sp|Q5BJP3|UFM1_RAT Ubiquitin-fold modifier 1 OS=Rattus norvegicus GN=Ufm1 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 38/44 (86%)

Query: 78  ECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS 121
           + P  TSAIIT+DGIGINP QTAG VF+KHG ELRLIPRDRVGS
Sbjct: 41  KVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDRVGS 84

Ubiquitin-like modifier protein which binds to a number of target proteins, such as DDRGK1.

Rattus norvegicus (taxid: 10116)

>sp|B0WK43|UFM1_CULQU Ubiquitin-fold modifier 1 OS=Culex quinquefasciatus GN=CPIJ007098 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 37/42 (88%)

Query: 79  CPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVG 120
            P  TSAIITDDGIGINPQQTAG VF+KHG ELRLIPRDRVG
Sbjct: 43  VPSETSAIITDDGIGINPQQTAGNVFLKHGSELRLIPRDRVG 84

Ubiquitin-like modifier protein which binds to a number of as yet unidentified target proteins.

Culex quinquefasciatus (taxid: 7176)

>sp|A8D888|UFM1_ARTSF Ubiquitin-fold modifier 1 OS=Artemia franciscana PE=3 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/42 (83%), Positives = 36/42 (85%)

Query: 79  CPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVG 120
            P  TSAIITDDG GINPQQTAG VF+KHG ELRLIPRDRVG
Sbjct: 43  VPAATSAIITDDGAGINPQQTAGNVFLKHGSELRLIPRDRVG 84

Ubiquitin-like modifier protein which binds to a number of as yet unidentified target proteins.

Artemia franciscana (taxid: 6661)

>sp|Q5PU89|UFM1_CHLIN Ubiquitin-fold modifier 1 OS=Chlamydomonas incerta GN=PR46a PE=3 SV=1

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 38/43 (88%)

Query: 78  ECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVG 120
           + P  TSAIIT+DG+GINPQQTAG VF+KHG ELRLIPRDRVG
Sbjct: 51  KVPAQTSAIITNDGVGINPQQTAGNVFLKHGSELRLIPRDRVG 93

Ubiquitin-like modifier protein which binds to a number of as yet unidentified target proteins.

Chlamydomonas incerta (taxid: 51695)

>sp|A8DYH2|UFM1_DROME Ubiquitin-fold modifier 1 OS=Drosophila melanogaster GN=CG34191 PE=3 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/45 (77%), Positives = 39/45 (86%)

Query: 78  ECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGSR 122
           + P  TSAIITDDGIGI+PQQTAG VF+KHG ELRLIPRDRVG +
Sbjct: 41  KVPAETSAIITDDGIGISPQQTAGNVFLKHGSELRLIPRDRVGHQ 85

Ubiquitin-like modifier protein which binds to a number of as yet unidentified target proteins.

Drosophila melanogaster (taxid: 7227)

>sp|B4LP65|UFM1_DROVI Ubiquitin-fold modifier 1 OS=Drosophila virilis GN=GJ21018 PE=3 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/43 (81%), Positives = 38/43 (88%)

Query: 78  ECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVG 120
           + P  TSAIITDDGIGI+PQQTAG VF+KHG ELRLIPRDRVG
Sbjct: 41  KVPAETSAIITDDGIGISPQQTAGNVFLKHGSELRLIPRDRVG 83

Ubiquitin-like modifier protein which binds to a number of as yet unidentified target proteins.

Drosophila virilis (taxid: 7244)

>sp|B4KSR4|UFM1_DROMO Ubiquitin-fold modifier 1 OS=Drosophila mojavensis GN=GI21165 PE=3 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/43 (81%), Positives = 38/43 (88%)

Query: 78  ECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVG 120
           + P  TSAIITDDGIGI+PQQTAG VF+KHG ELRLIPRDRVG
Sbjct: 41  KVPAETSAIITDDGIGISPQQTAGNVFLKHGSELRLIPRDRVG 83

Ubiquitin-like modifier protein which binds to a number of as yet unidentified target proteins.

Drosophila mojavensis (taxid: 7230)

>sp|B9ENM6|UFM1_SALSA Ubiquitin-fold modifier 1 OS=Salmo salar GN=ufm1 PE=3 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/45 (75%), Positives = 38/45 (84%)

Query: 78  ECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGSR 122
           + P  TSAIIT+DGIGINP QTAG VF+KHG ELR+IPRDRVG R
Sbjct: 41  KVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGGR 85

Ubiquitin-like modifier protein which binds to a number of as yet unidentified target proteins.

Salmo salar (taxid: 8030)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
157112715	86	Ubiquitin-fold modifier 1 precursor, put	0.368	0.523	0.822	8e-14
225711936	88	Ubiquitin-fold modifier 1 precursor [Lep	0.360	0.5	0.840	1e-13
118794866	88	AGAP001364-PA [Anopheles gambiae str. PE	0.368	0.511	0.844	1e-13
290462427	88	Probable ubiquitin-fold modifier 1 [Lepe	0.360	0.5	0.840	1e-13
242021142	94	ubiquitin-fold modifier 1 precursor, put	0.368	0.478	0.8	2e-13
226479164	85	Ubiquitin-fold modifier 1 precursor [Sch	0.360	0.517	0.795	2e-13
321454844	87	hypothetical protein DAPPUDRAFT_130409 [	0.327	0.459	0.9	2e-13
389609491	87	ubiquitin-fold modifier 1 Precursor [Pap	0.319	0.448	0.923	2e-13
189236431	90	PREDICTED: similar to Ubiquitin-fold mod	0.360	0.488	0.795	3e-13
270005403	88	hypothetical protein TcasGA2_TC007454 [T	0.360	0.5	0.795	3e-13

>gi|157112715|ref|XP_001657613.1| Ubiquitin-fold modifier 1 precursor, putative [Aedes aegypti] gi|122117820|sp|Q176V0.1|UFM1_AEDAE RecName: Full=Ubiquitin-fold modifier 1; Flags: Precursor gi|108877961|gb|EAT42186.1| AAEL006251-PA [Aedes aegypti]

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 39/45 (86%)

Query: 78  ECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGSR 122
           + P  TSAIITDDGIGINPQQTAG VF+KHG ELRLIPRDRVGS 
Sbjct: 42  KVPPATSAIITDDGIGINPQQTAGNVFLKHGSELRLIPRDRVGSH 86

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225711936|gb|ACO11814.1| Ubiquitin-fold modifier 1 precursor [Lepeophtheirus salmonis] gi|225713586|gb|ACO12639.1| Ubiquitin-fold modifier 1 precursor [Lepeophtheirus salmonis] gi|290463035|gb|ADD24565.1| Ubiquitin-fold modifier 1 [Lepeophtheirus salmonis] gi|290562900|gb|ADD38844.1| Ubiquitin-fold modifier 1 [Lepeophtheirus salmonis]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/44 (84%), Positives = 39/44 (88%)

Query: 78  ECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS 121
           + P  TSAIITDDGIGINPQQTAG VFMKHG ELRLIPRDRVG+
Sbjct: 41  KVPPATSAIITDDGIGINPQQTAGNVFMKHGSELRLIPRDRVGN 84

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118794866|ref|XP_321781.3| AGAP001364-PA [Anopheles gambiae str. PEST] gi|290463436|sp|Q7PXE2.3|UFM1_ANOGA RecName: Full=Ubiquitin-fold modifier 1; Flags: Precursor gi|116116500|gb|EAA01133.3| AGAP001364-PA [Anopheles gambiae str. PEST]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/45 (84%), Positives = 40/45 (88%)

Query: 78  ECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGSR 122
           + P  TSAIITDDGIGINPQQTAGTVF+KHG ELRLIPRDRVG R
Sbjct: 43  KVPPATSAIITDDGIGINPQQTAGTVFLKHGSELRLIPRDRVGCR 87

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|290462427|gb|ADD24261.1| Probable ubiquitin-fold modifier 1 [Lepeophtheirus salmonis]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/44 (84%), Positives = 39/44 (88%)

Query: 78  ECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS 121
           + P  TSAIITDDGIGINPQQTAG VFMKHG ELRLIPRDRVG+
Sbjct: 41  KVPPTTSAIITDDGIGINPQQTAGNVFMKHGSELRLIPRDRVGN 84

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021142|ref|XP_002431005.1| ubiquitin-fold modifier 1 precursor, putative [Pediculus humanus corporis] gi|212516229|gb|EEB18267.1| ubiquitin-fold modifier 1 precursor, putative [Pediculus humanus corporis]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/45 (80%), Positives = 39/45 (86%)

Query: 78  ECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGSR 122
           + P  TSAIITDDGIGINPQQTAG VF+KHG ELRLIPRDRVG+ 
Sbjct: 45  KVPPATSAIITDDGIGINPQQTAGNVFLKHGSELRLIPRDRVGNN 89

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|226479164|emb|CAX73077.1| Ubiquitin-fold modifier 1 precursor [Schistosoma japonicum]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 39/44 (88%)

Query: 78  ECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS 121
           + P  TSAIITDDGIGINPQQTAG +F+KHG +LRLIPRDRVGS
Sbjct: 41  DVPAATSAIITDDGIGINPQQTAGEIFLKHGSDLRLIPRDRVGS 84

Source: Schistosoma japonicum

Species: Schistosoma japonicum

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|321454844|gb|EFX65997.1| hypothetical protein DAPPUDRAFT_130409 [Daphnia pulex]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/40 (90%), Positives = 38/40 (95%)

Query: 83  TSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGSR 122
           TSAIITDDGIGINPQQTAG VF+KHG ELRLIPRDRVG+R
Sbjct: 47  TSAIITDDGIGINPQQTAGNVFLKHGSELRLIPRDRVGNR 86

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389609491|dbj|BAM18357.1| ubiquitin-fold modifier 1 Precursor [Papilio xuthus]

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/39 (92%), Positives = 37/39 (94%)

Query: 83  TSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS 121
           TSAIITDDGIGINPQQTAG VF+KHG ELRLIPRDRVGS
Sbjct: 46  TSAIITDDGIGINPQQTAGNVFLKHGSELRLIPRDRVGS 84

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236431|ref|XP_972666.2| PREDICTED: similar to Ubiquitin-fold modifier 1 precursor, putative [Tribolium castaneum]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 39/44 (88%)

Query: 78  ECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS 121
           + P  TSAIITDDG+GINPQQTAG VF+KHG ELRLIPRDRVG+
Sbjct: 45  KVPPATSAIITDDGVGINPQQTAGNVFLKHGSELRLIPRDRVGA 88

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005403|gb|EFA01851.1| hypothetical protein TcasGA2_TC007454 [Tribolium castaneum]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 39/44 (88%)

Query: 78  ECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS 121
           + P  TSAIITDDG+GINPQQTAG VF+KHG ELRLIPRDRVG+
Sbjct: 43  KVPPATSAIITDDGVGINPQQTAGNVFLKHGSELRLIPRDRVGA 86

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
RGD|1304890	85	Ufm1 "ubiquitin-fold modifier	0.344	0.494	0.833	6.2e-14
UNIPROTKB|B9ENM6	100	ufm1 "Ubiquitin-fold modifier	0.352	0.43	0.790	7.9e-14
UNIPROTKB|C1BJ98	91	ufm1 "Ubiquitin-fold modifier	0.352	0.472	0.790	7.9e-14
UNIPROTKB|F1Q2H2	84	UFM1 "Uncharacterized protein"	0.344	0.5	0.809	1e-13
UNIPROTKB|P61960	85	UFM1 "Ubiquitin-fold modifier	0.344	0.494	0.809	1e-13
UNIPROTKB|F1RS33	65	UFM1 "Uncharacterized protein"	0.344	0.646	0.809	1e-13
UNIPROTKB|B3DL37	85	ufm1 "Ubiquitin-fold modifier	0.344	0.494	0.809	1e-13
UNIPROTKB|Q4R4I2	85	UFM1 "Ubiquitin-fold modifier	0.344	0.494	0.809	1e-13
UNIPROTKB|Q5R4N5	85	UFM1 "Ubiquitin-fold modifier	0.344	0.494	0.809	1e-13
UNIPROTKB|Q5RJW4	85	ufm1 "Ubiquitin-fold modifier	0.344	0.494	0.809	1e-13

RGD|1304890 Ufm1 "ubiquitin-fold modifier 1" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 35/42 (83%), Positives = 37/42 (88%)

Query:    80 PLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS 121
             P  TSAIIT+DGIGINP QTAG VF+KHG ELRLIPRDRVGS
Sbjct:    43 PAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDRVGS 84

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0071569 "protein ufmylation" evidence=ISO;ISS

UNIPROTKB|B9ENM6 ufm1 "Ubiquitin-fold modifier 1" [Salmo salar (taxid:8030)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 34/43 (79%), Positives = 37/43 (86%)

Query:    80 PLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGSR 122
             P  TSAIIT+DGIGINP QTAG VF+KHG ELR+IPRDRVG R
Sbjct:    43 PAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGGR 85

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0071569 "protein ufmylation" evidence=ISS

UNIPROTKB|C1BJ98 ufm1 "Ubiquitin-fold modifier 1" [Osmerus mordax (taxid:8014)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 34/43 (79%), Positives = 37/43 (86%)

Query:    80 PLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGSR 122
             P  TSAIIT+DGIGINP QTAG VF+KHG ELR+IPRDRVG R
Sbjct:    43 PAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGGR 85

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0071569 "protein ufmylation" evidence=ISS

UNIPROTKB|F1Q2H2 UFM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 34/42 (80%), Positives = 37/42 (88%)

Query:    80 PLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS 121
             P  TSAIIT+DGIGINP QTAG VF+KHG ELR+IPRDRVGS
Sbjct:    42 PAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 83

GO:0071569 "protein ufmylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|P61960 UFM1 "Ubiquitin-fold modifier 1" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 34/42 (80%), Positives = 37/42 (88%)

Query:    80 PLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS 121
             P  TSAIIT+DGIGINP QTAG VF+KHG ELR+IPRDRVGS
Sbjct:    43 PAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 84

GO:0005737 "cytoplasm" evidence=IDA

GO:0071569 "protein ufmylation" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|F1RS33 UFM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 34/42 (80%), Positives = 37/42 (88%)

Query:    80 PLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS 121
             P  TSAIIT+DGIGINP QTAG VF+KHG ELR+IPRDRVGS
Sbjct:    23 PAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 64

GO:0071569 "protein ufmylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|B3DL37 ufm1 "Ubiquitin-fold modifier 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 34/42 (80%), Positives = 37/42 (88%)

Query:    80 PLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS 121
             P  TSAIIT+DGIG+NP QTAG VF+KHG ELRLIPRDRVGS
Sbjct:    43 PAATSAIITNDGIGLNPAQTAGNVFLKHGSELRLIPRDRVGS 84

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0071569 "protein ufmylation" evidence=ISS

UNIPROTKB|Q4R4I2 UFM1 "Ubiquitin-fold modifier 1" [Macaca fascicularis (taxid:9541)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 34/42 (80%), Positives = 37/42 (88%)

Query:    80 PLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS 121
             P  TSAIIT+DGIGINP QTAG VF+KHG ELR+IPRDRVGS
Sbjct:    43 PAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 84

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0071569 "protein ufmylation" evidence=ISS

UNIPROTKB|Q5R4N5 UFM1 "Ubiquitin-fold modifier 1" [Pongo abelii (taxid:9601)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 34/42 (80%), Positives = 37/42 (88%)

Query:    80 PLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS 121
             P  TSAIIT+DGIGINP QTAG VF+KHG ELR+IPRDRVGS
Sbjct:    43 PAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 84

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0071569 "protein ufmylation" evidence=ISS

UNIPROTKB|Q5RJW4 ufm1 "Ubiquitin-fold modifier 1" [Xenopus laevis (taxid:8355)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 34/42 (80%), Positives = 37/42 (88%)

Query:    80 PLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS 121
             P  TSAIIT+DGIG+NP QTAG VF+KHG ELRLIPRDRVGS
Sbjct:    43 PAATSAIITNDGIGLNPAQTAGNVFLKHGSELRLIPRDRVGS 84

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0071569 "protein ufmylation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B5E0K3	UFM1_DROPS	No assigned EC number	0.8139	0.3524	0.5119	yes	N/A
Q5R4N5	UFM1_PONAB	No assigned EC number	0.7727	0.3606	0.5176	yes	N/A
Q5ZMK7	UFM1_CHICK	No assigned EC number	0.75	0.3606	0.5176	yes	N/A
B0G186	UFM1_DICDI	No assigned EC number	0.6976	0.3524	0.5058	yes	N/A
Q7PXE2	UFM1_ANOGA	No assigned EC number	0.8444	0.3688	0.5113	yes	N/A
A8DYH2	UFM1_DROME	No assigned EC number	0.7777	0.3688	0.5172	yes	N/A
Q5BJP3	UFM1_RAT	No assigned EC number	0.7954	0.3606	0.5176	yes	N/A
Q94DM8	UFM1_ORYSJ	No assigned EC number	0.75	0.3606	0.4313	yes	N/A
B3DL37	UFM1_XENTR	No assigned EC number	0.7727	0.3606	0.5176	yes	N/A
Q9CA23	UFM1_ARATH	No assigned EC number	0.7727	0.3606	0.4731	yes	N/A
P61960	UFM1_HUMAN	No assigned EC number	0.7727	0.3606	0.5176	yes	N/A
P61961	UFM1_MOUSE	No assigned EC number	0.7727	0.3606	0.5176	yes	N/A
Q2KJG2	UFM1_BOVIN	No assigned EC number	0.7674	0.3524	0.5058	yes	N/A
Q4N927	UFM1_THEPA	No assigned EC number	0.7631	0.3114	0.4130	yes	N/A
P34661	UFM1_CAEEL	No assigned EC number	0.6976	0.3524	0.4574	yes	N/A
Q803Y4	UFM1_DANRE	No assigned EC number	0.7441	0.3524	0.4777	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	122
cd01766	82	cd01766, Ufm1, Urm1-like ubiquitin domain	1e-20
pfam03671	76	pfam03671, Ufm1, Ubiquitin fold modifier 1 protein	7e-14

>gnl|CDD|176361 cd01766, Ufm1, Urm1-like ubiquitin domain

 Score = 78.9 bits (194), Expect = 1e-20
 Identities = 34/41 (82%), Positives = 36/41 (87%)

Query: 80  PLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVG 120
           P  TSAIIT+DGIGINP QTAG VF+KHG ELRLIPRDRVG
Sbjct: 42  PAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDRVG 82

Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1. Length = 82

>gnl|CDD|202722 pfam03671, Ufm1, Ubiquitin fold modifier 1 protein

 Score = 61.3 bits (148), Expect = 7e-14
 Identities = 27/35 (77%), Positives = 30/35 (85%)

Query: 80  PLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLI 114
           P  TSAIIT+DGIGINP QTAG VF+KHG ELR+I
Sbjct: 42  PAATSAIITNDGIGINPAQTAGNVFLKHGSELRII 76

This is a family of short ubiquitin-like proteins, that is like neither type-1 or type-2. It is a ubiquitin-fold modifier 1 (Ufm1) that is synthesised in a precursor form of 85 amino-acid residues. In humans the enzyme for Ufm1 is Uba5 and the conjugating enzyme is Ufc1. Prior to activation by Uba5 the extra two amino acids at the C-terminal region of the human pro-Ufm1 protein are removed to expose Gly whose residue is necessary for conjugation to target molecule(s). The mature Ufm1 is conjugated to yet unidentified endogenous proteins. While Ubiquitin and many Ubls possess the conserved C-terminal di-glycine that is adenylated by each specific E1 or E1-like enzyme, respectively, in an ATP-dependent manner, Ufm1(1-83) possesses a single glycine at its C-terminus, which is followed by a Ser-Cys dipeptide in the precursor form of Ufm1. The C-terminally processed Ufm1(1-83) is specifically activated by Uba5, an E1-like enzyme, and then transferred to its cognate Ufc1, an E2-like enzyme. Length = 76

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
cd01766	82	Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-f	99.97
KOG3483|consensus	94		99.97
PF03671	76	Ufm1: Ubiquitin fold modifier 1 protein; InterPro:	99.91

>cd01766 Ufm1 Urm1-like ubiquitin domain

Probab=99.97  E-value=2.8e-33  Score=197.59  Aligned_cols=46  Identities=74%  Similarity=1.097  Sum_probs=44.7

Q ss_pred             ccccCCCcceeEEccCCcccCccCcccceeeecCceeeeeecCCCC
Q psy3819          75 GLGECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVG  120 (122)
Q Consensus        75 gqfkV~~aTSAIITndGiGINP~QTAG~vflKhGseLrlIPRDRVG  120 (122)
                      .+||||++|||||||||+||||+|||||||||||||||||||||||
T Consensus        37 EeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDrvG   82 (82)
T cd01766          37 EEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDRVG   82 (82)
T ss_pred             HhcCCCccceeEEecCccccChhhcccceeeecCCEeeecccccCC
Confidence            3599999999999999999999999999999999999999999998

Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.

>KOG3483|consensus

Probab=99.97  E-value=2.3e-31  Score=191.30  Aligned_cols=46  Identities=74%  Similarity=1.110  Sum_probs=44.7

Q ss_pred             cccCCCcceeEEccCCcccCccCcccceeeecCceeeeeecCCCCC
Q psy3819          76 LGECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS  121 (122)
Q Consensus        76 qfkV~~aTSAIITndGiGINP~QTAG~vflKhGseLrlIPRDRVG~  121 (122)
                      .||||++||||||||||||||+|||||||||||||||||||||||+
T Consensus        49 efkvpaatsaiitndgiginpaq~agnvflkhgselr~iprdrvg~   94 (94)
T KOG3483|consen   49 EFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS   94 (94)
T ss_pred             HccCCccceeEEecCccccCccccccceeeccCCEEEeccccccCC
Confidence            3999999999999999999999999999999999999999999995

>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.91  E-value=7.4e-26  Score=158.08  Aligned_cols=40  Identities=70%  Similarity=1.006  Sum_probs=34.7

Q ss_pred             ccccCCCcceeEEccCCcccCccCcccceeeecCceeeee
Q psy3819          75 GLGECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLI  114 (122)
Q Consensus        75 gqfkV~~aTSAIITndGiGINP~QTAG~vflKhGseLrlI  114 (122)
                      .+||||++|||||||||+||||+||||+||||||||||||
T Consensus        37 eeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrli   76 (76)
T PF03671_consen   37 EEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI   76 (76)
T ss_dssp             HHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred             HHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence            3599999999999999999999999999999999999998

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	122
1j0g_A	92	Solution Structure Of Mouse Hypothetical 9.1 Kda Pr		3e-15
1wxs_A	90	Solution Structure Of Ufm1, A Ubiquitin-Fold Modifi		4e-15
1l7y_A	94	Solution Nmr Structure Of C. Elegans Protein Zk652.		8e-14

>pdb|1J0G|A Chain A, Solution Structure Of Mouse Hypothetical 9.1 Kda Protein, A Ubiquitin-Like Fold Length = 92

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/44 (77%), Positives = 38/44 (86%)
Query: 78  ECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS 121
           + P  TSAIIT+DGIGINP QTAG VF+KHG ELR+IPRDRVGS
Sbjct: 48  KVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 91

>pdb|1WXS|A Chain A, Solution Structure Of Ufm1, A Ubiquitin-Fold Modifier Length = 90

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 34/44 (77%), Positives = 38/44 (86%)
Query: 78  ECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS 121
           + P  TSAIIT+DGIGINP QTAG VF+KHG ELR+IPRDRVGS
Sbjct: 46  KVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 89

>pdb|1L7Y|A Chain A, Solution Nmr Structure Of C. Elegans Protein Zk652.3. Northeast Structural Genomics Consortium Target Wr41 Length = 94

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 36/43 (83%)
Query: 78  ECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVG 120
           + P  TSAIIT+DG+G+NP Q AG +F+KHG ELRLIPRDRVG
Sbjct: 51  KVPAATSAIITNDGVGVNPAQPAGNIFLKHGSELRLIPRDRVG 93

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
1j0g_A	92	Hypothetical protein 1810045K17; ubiquitin-like fo	4e-22

>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A Length = 92

 Score = 82.5 bits (203), Expect = 4e-22
 Identities = 34/42 (80%), Positives = 37/42 (88%)

Query: 80  PLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS 121
           P  TSAIIT+DGIGINP QTAG VF+KHG ELR+IPRDRVGS
Sbjct: 50  PAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
1j0g_A	92	Hypothetical protein 1810045K17; ubiquitin-like fo	99.97

>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A

Probab=99.97  E-value=1.5e-33  Score=201.17  Aligned_cols=47  Identities=72%  Similarity=1.081  Sum_probs=45.5

Q ss_pred             ccccCCCcceeEEccCCcccCccCcccceeeecCceeeeeecCCCCC
Q psy3819          75 GLGECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS  121 (122)
Q Consensus        75 gqfkV~~aTSAIITndGiGINP~QTAG~vflKhGseLrlIPRDRVG~  121 (122)
                      .+|+|||+|||||||||+||||+|||||||||||||||||||||||.
T Consensus        45 EeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG~   91 (92)
T 1j0g_A           45 EEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS   91 (92)
T ss_dssp             HHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSCC
T ss_pred             HHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecccccccC
Confidence            36999999999999999999999999999999999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	122
d1j0ga_	92	d.15.1.6 (A:) Hypothetical protein 1810045k17 {Mou	1e-23

>d1j0ga_ d.15.1.6 (A:) Hypothetical protein 1810045k17 {Mouse (Mus musculus) [TaxId: 10090]} Length = 92

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: BM-002-like
domain: Hypothetical protein 1810045k17
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.3 bits (211), Expect = 1e-23
 Identities = 34/42 (80%), Positives = 37/42 (88%)

Query: 80  PLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS 121
           P  TSAIIT+DGIGINP QTAG VF+KHG ELR+IPRDRVGS
Sbjct: 50  PAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	122
d1j0ga_	92	Hypothetical protein 1810045k17 {Mouse (Mus muscul	99.97

>d1j0ga_ d.15.1.6 (A:) Hypothetical protein 1810045k17 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: BM-002-like
domain: Hypothetical protein 1810045k17
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=6.5e-34  Score=201.38  Aligned_cols=47  Identities=72%  Similarity=1.081  Sum_probs=45.5

Q ss_pred             ccccCCCcceeEEccCCcccCccCcccceeeecCceeeeeecCCCCC
Q psy3819          75 GLGECPLVTSAIITDDGIGINPQQTAGTVFMKHGCELRLIPRDRVGS  121 (122)
Q Consensus        75 gqfkV~~aTSAIITndGiGINP~QTAG~vflKhGseLrlIPRDRVG~  121 (122)
                      .+||||++|||||||||+||||+||||+||||||||||||||||||.
T Consensus        45 EeFkV~~~TSAiITndGvGINP~QtAg~vFlKhGselrliPRDRVG~   91 (92)
T d1j0ga_          45 EEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS   91 (92)
T ss_dssp             HHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSCC
T ss_pred             HHcCCCccceeEEecCccccChhhccchhhhhcCceeeecccccccC
Confidence            36999999999999999999999999999999999999999999996