Psyllid ID: psy3857

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
MASFFGTAFNPFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADAFKDIPNLEGVNQIYQELRSKGIEFPMTDLDAMAPIITPKKSKEVASSHPVQRSKVPMGAAGDHDERLTPEQVTKLHKDLEVVQANMAVFNEMLNTLIPGQEHSSDIELITELHATCKAMQERIVQLISKYSQEDFITELLQVNDQLNNLFLRFNRYESNREAAIGKQNPDAASKLSKKPDVAADSGPSLIDLDDDDPVDVGLNSNLSKLKFLQENLAI
cccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHcHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccccccccccccccccHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHccHHHHHHcHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccc
masffgtafnpfaspvgskiematdptlasenWALNMEICDIinetedgpkDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKligpkneppiivQDKVLSLIQSWADAfkdipnlegVNQIYQELRSkgiefpmtdldamapiitpkkskevasshpvqrskvpmgaagdhderltpeqVTKLHKDLEVVQANMAVFNEMLNtlipgqehssdIELITELHATCKAMQERIVQLISKYSQEDFITELLQVNDQLNNLFLRFNRYesnreaaigkqnpdaasklskkpdvaadsgpslidlddddpvdvglnsnLSKLKFLQENLAI
masffgtafnpfaspvgskiEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADAFKDIPNLEGVNQIYQELRSKGIEFPMTDLDAMAPIITpkkskevasshpvqrskvpmgaagdhdeRLTPEQVTKLHKDLEVVQANMAVFNEMLNTLIPGQEHSSDIELITELHATCKAMQERIVQLISKYSQEDFITELLQVNDQLNNLFLRFNRYESNREaaigkqnpdaasklskkpdvAADSgpslidlddddPVDVGLNSnlsklkflqenlai
MASFFGTAFNPFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADAFKDIPNLEGVNQIYQELRSKGIEFPMTDLDAMAPIITPKKSKEVASSHPVQRSKVPMGAAGDHDERLTPEQVTKLHKDLEVVQANMAVFNEMLNTLIPGQEHSSDIELITELHATCKAMQERIVQLISKYSQEDFITELLQVNDQLNNLFLRFNRYESNREAAIGKQNPDAASKLSKKPDVAAdsgpslidlddddpvdvgLNSNLSKLKFLQENLAI
*******AFN*F**********ATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADAFKDIPNLEGVNQIYQELRSKGIEFPMTDLDAMA*****************************************LHKDLEVVQANMAVFNEMLNTLIPGQEHSSDIELITELHATCKAMQERIVQLISKYSQEDFITELLQVNDQLNNLFLRFNRY**************************************************************
**************PVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADAFKDIPNLEGVNQIYQELRSKG******************************************************************V*********************TELHATCKAMQERIVQLISKYSQEDFITELLQVNDQLNNLFLRFNR********************************************************L******
MASFFGTAFNPFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADAFKDIPNLEGVNQIYQELRSKGIEFPMTDLDAMAPIITPK*************SKVPMGAAGDHDERLTPEQVTKLHKDLEVVQANMAVFNEMLNTLIPGQEHSSDIELITELHATCKAMQERIVQLISKYSQEDFITELLQVNDQLNNLFLRFNRYESNREAAI*******************DSGPSLIDLDDDDPVDVGLNSNLSKLKFLQENLAI
*************SP**SKIE*ATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADAFKDIPNLEGVNQIYQELRSKGIEFPMTDLDAMAP******************************ERLTPEQVTKLHKDLEVVQANMAVFNEMLNTLIPGQEHSSDIELITELHATCKAMQERIVQLISKYSQEDFITELLQVNDQLNNLFLRFNRYESN***********************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASFFGTAFNPFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADAFKDIPNLEGVNQIYQELRSKGIEFPMTDLDAMAPIITPKKSKEVASSHPVQRSKVPMGAAGDHDERLTPEQVTKLHKDLEVVQANMAVFNEMLNTLIPGQEHSSDIELITELHATCKAMQERIVQLISKYSQEDFITELLQVNDQLNNLFLRFNRYESNREAAIGKQNPDAASKLSKKPDVAADSGPSLIDLDDDDPVDVGLNSNLSKLKFLQENLAI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query349 2.2.26 [Sep-21-2011]
Q5SRX1 507 TOM1-like protein 2 OS=Mu yes N/A 0.808 0.556 0.517 3e-87
Q6ZVM7 507 TOM1-like protein 2 OS=Ho yes N/A 0.808 0.556 0.524 1e-86
O88746 492 Target of Myb protein 1 O no N/A 0.914 0.648 0.471 8e-86
O60784 492 Target of Myb protein 1 O no N/A 0.914 0.648 0.474 2e-84
Q68FJ8 507 TOM1-like protein 2 OS=Xe N/A N/A 0.891 0.613 0.481 2e-83
O12940 515 Target of Myb protein 1 O no N/A 0.802 0.543 0.514 1e-78
F1LM81 475 TOM1-like protein 1 OS=Ra no N/A 0.928 0.682 0.337 2e-50
O75674 476 TOM1-like protein 1 OS=Ho no N/A 0.891 0.653 0.340 3e-50
Q923U0 474 TOM1-like protein 1 OS=Mu no N/A 0.896 0.660 0.343 8e-50
P70297 548 Signal transducing adapte no N/A 0.398 0.253 0.348 2e-21
>sp|Q5SRX1|TM1L2_MOUSE TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1 Back     alignment and function desciption
 Score =  322 bits (824), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 159/307 (51%), Positives = 210/307 (68%), Gaps = 25/307 (8%)

Query: 10  NPFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDY 69
           NPF++PVG  +E ATD +L SE+W LNMEICDIINETE+GPKDAI+A++KRL     ++Y
Sbjct: 7   NPFSTPVGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLS--GNRNY 64

Query: 70  TVIMYTLTVLETCVKNCNRRFHILVCSKDFIQE-LYKLIGPKNEPPIIVQDKVLSLIQSW 128
             +M  LTVLETCVKNC  RFH+LV ++DFI   L K+I PKN PP IVQDKVL+LIQ+W
Sbjct: 65  REVMLALTVLETCVKNCGHRFHLLVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAW 124

Query: 129 ADAFKDIPNLEGVNQIYQELRSKGIEFPMTDLDAMAPIITPKKS-KEVASSHPVQRSKV- 186
           ADAF+  P+L GV  IY+EL+ +GIEFPM DLDA++PI TP++S  E+  +  + RS+  
Sbjct: 125 ADAFRSSPDLTGVVHIYEELKRRGIEFPMADLDALSPIHTPQRSVPEMDPAATIPRSQTQ 184

Query: 187 PMGAAGDHDE--------------------RLTPEQVTKLHKDLEVVQANMAVFNEMLNT 226
           P   AG +                          EQ+ +L  +L++V+ N  V +EML  
Sbjct: 185 PRTTAGTYSSPPPASYSTLQAPALSVTGPITANSEQIARLRSELDIVRGNTKVMSEMLTE 244

Query: 227 LIPGQEHSSDIELITELHATCKAMQERIVQLISKYSQEDFITELLQVNDQLNNLFLRFNR 286
           ++PGQE SSD+EL+ EL+ TC+AMQ RIV+LIS+ S E+   ELL VND LNN+FLR+ R
Sbjct: 245 MVPGQEDSSDLELLQELNRTCRAMQHRIVELISRVSNEEVTEELLHVNDDLNNVFLRYER 304

Query: 287 YESNREA 293
           +E  R  
Sbjct: 305 FERYRSG 311
Probable role in protein transport. May regulate growth factor-induced mitogenic signaling.
Mus musculus (taxid: 10090)
>sp|Q6ZVM7|TM1L2_HUMAN TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1 SV=1 Back     alignment and function description
>sp|O88746|TOM1_MOUSE Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE=1 SV=1 Back     alignment and function description
>sp|O60784|TOM1_HUMAN Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE=1 SV=2 Back     alignment and function description
>sp|Q68FJ8|TM1L2_XENLA TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1 Back     alignment and function description
>sp|O12940|TOM1_CHICK Target of Myb protein 1 OS=Gallus gallus GN=TOM1 PE=2 SV=2 Back     alignment and function description
>sp|F1LM81|TM1L1_RAT TOM1-like protein 1 OS=Rattus norvegicus GN=Tom1l1 PE=1 SV=1 Back     alignment and function description
>sp|O75674|TM1L1_HUMAN TOM1-like protein 1 OS=Homo sapiens GN=TOM1L1 PE=1 SV=2 Back     alignment and function description
>sp|Q923U0|TM1L1_MOUSE TOM1-like protein 1 OS=Mus musculus GN=Tom1l1 PE=1 SV=1 Back     alignment and function description
>sp|P70297|STAM1_MOUSE Signal transducing adapter molecule 1 OS=Mus musculus GN=Stam PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query349
270004201 479 hypothetical protein TcasGA2_TC003525 [T 0.925 0.674 0.586 1e-109
91079070 462 PREDICTED: similar to AGAP006097-PB [Tri 0.925 0.699 0.586 1e-109
328707285 471 PREDICTED: TOM1-like protein 2-like isof 0.845 0.626 0.611 1e-108
328707283 480 PREDICTED: TOM1-like protein 2-like isof 0.845 0.614 0.611 1e-108
427787691 512 Putative cytosolic sorting protein gga2/ 0.936 0.638 0.554 1e-106
340716389 525 PREDICTED: TOM1-like protein 2-like [Bom 0.905 0.601 0.549 1e-101
328788965 525 PREDICTED: TOM1-like protein 2-like [Api 0.948 0.630 0.529 1e-101
383853040 524 PREDICTED: TOM1-like protein 2-like [Meg 0.911 0.606 0.546 1e-101
350406300 525 PREDICTED: TOM1-like protein 2-like [Bom 0.905 0.601 0.546 1e-101
380018143 523 PREDICTED: TOM1-like protein 2-like isof 0.948 0.632 0.524 1e-101
>gi|270004201|gb|EFA00649.1| hypothetical protein TcasGA2_TC003525 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/334 (58%), Positives = 249/334 (74%), Gaps = 11/334 (3%)

Query: 3   SFFGTAF--NPFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKR 60
           SFFGTA   NPF++PVGS+IE ATD TLASENW+LNMEICD++NETEDGP+DA+KAIRKR
Sbjct: 2   SFFGTALGGNPFSTPVGSRIEQATDGTLASENWSLNMEICDLVNETEDGPRDAVKAIRKR 61

Query: 61  LQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQDK 120
           L Q AGK+YTV+MYTLTVLETCVKNC +RFH+L+C+KDF+ EL KLIGPKN+PP  VQ+K
Sbjct: 62  LTQNAGKNYTVVMYTLTVLETCVKNCGKRFHVLICNKDFVTELVKLIGPKNDPPTAVQEK 121

Query: 121 VLSLIQSWADAFKDIPNLEGVNQIYQELRSKGIEFPMTDLDAMAPIITPKKS--KEVASS 178
           VLSLIQSWADAF++ P + GV  +YQ+L +KGIEFP TDLD+MAPI TP++S   EV   
Sbjct: 122 VLSLIQSWADAFRNQPEMSGVVCVYQDLLAKGIEFPATDLDSMAPIHTPQRSVETEVPVE 181

Query: 179 HPVQRSKVPMGAAGDHDERLTPEQVTKLHKDLEVVQANMAVFNEMLNTLIPGQEHSSDIE 238
            P+ +   P          L+PEQ  KL  +L+VVQ+NM V  EML+ + PG E   ++E
Sbjct: 182 APIPQHSSPTPHLPSPSGSLSPEQRAKLQSELDVVQSNMNVLGEMLSEMKPGNEQPDELE 241

Query: 239 LITELHATCKAMQERIVQLISKYSQEDFITELLQVNDQLNNLFLRFNRYESNREAAIGKQ 298
           L+ ELH TC++MQER+V LISK S ++   ELL++ND LNNLFLR++R+E NR+   GKQ
Sbjct: 242 LLQELHVTCQSMQERLVDLISKLSNDELTAELLRINDDLNNLFLRYSRWEKNRD-TTGKQ 300

Query: 299 NPDA----ASKLSKKPDVAADSGPSLIDLDDDDP 328
           +  A    A   + KP + ++   SLID  DD P
Sbjct: 301 SASAVLAKAIPPTNKPPLQSED--SLIDFGDDLP 332

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91079070|ref|XP_975209.1| PREDICTED: similar to AGAP006097-PB [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328707285|ref|XP_001947346.2| PREDICTED: TOM1-like protein 2-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328707283|ref|XP_003243353.1| PREDICTED: TOM1-like protein 2-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|427787691|gb|JAA59297.1| Putative cytosolic sorting protein gga2/tom1 [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|340716389|ref|XP_003396681.1| PREDICTED: TOM1-like protein 2-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|328788965|ref|XP_001122551.2| PREDICTED: TOM1-like protein 2-like [Apis mellifera] Back     alignment and taxonomy information
>gi|383853040|ref|XP_003702032.1| PREDICTED: TOM1-like protein 2-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|350406300|ref|XP_003487723.1| PREDICTED: TOM1-like protein 2-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|380018143|ref|XP_003692995.1| PREDICTED: TOM1-like protein 2-like isoform 1 [Apis florea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query349
FB|FBgn0035995 543 CG3529 [Drosophila melanogaste 0.848 0.545 0.550 4.4e-84
UNIPROTKB|Q6ZVM7 507 TOM1L2 "TOM1-like protein 2" [ 0.498 0.343 0.612 6.5e-81
UNIPROTKB|A5PK10390 TOM1L2 "Uncharacterized protei 0.802 0.717 0.538 6.8e-79
UNIPROTKB|O60784 492 TOM1 "Target of Myb protein 1" 0.461 0.327 0.628 8.4e-79
UNIPROTKB|B0QY01335 TOM1 "Target of Myb protein 1" 0.444 0.462 0.609 3.2e-75
UNIPROTKB|E1BEE0 500 TOM1L2 "Uncharacterized protei 0.770 0.538 0.538 5.7e-75
ZFIN|ZDB-GENE-060721-1 476 tom1 "target of myb1 (chicken) 0.828 0.607 0.419 4.2e-63
WB|WBGene00015561437 C07A12.7 [Caenorhabditis elega 0.787 0.629 0.439 1.6e-56
MGI|MGI:2443306 507 Tom1l2 "target of myb1-like 2 0.713 0.491 0.471 1.1e-55
UNIPROTKB|E7EPD0 454 TOM1 "Target of Myb protein 1" 0.277 0.213 0.632 2e-55
FB|FBgn0035995 CG3529 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 173/314 (55%), Positives = 213/314 (67%)

Query:     1 MASFF--GTAFNPFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIR 58
             MASFF  G   N F++PVG +IE ATD  LASENWA NMEICD+INE+ D  +DA++AIR
Sbjct:     1 MASFFNVGALGNVFSTPVGQRIEAATDANLASENWAANMEICDMINESSDTARDAMRAIR 60

Query:    59 KRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELYKLIGPKNEPPIIVQ 118
             KRL Q AGK+  V+MYTLTVLETCVKNC + FH+LV  KDFI EL KLIGPKN+PP  +Q
Sbjct:    61 KRLSQNAGKNNQVVMYTLTVLETCVKNCGKAFHVLVAQKDFINELVKLIGPKNDPPAAMQ 120

Query:   119 DKVLSLIQSWADAFKDIPNLEGVNQIYQELRSKGIEFPMTDLDAMAPIITPKKS-KEV-- 175
             +KVLSLIQ WADAFK+ P+L GV Q+Y EL++KGIEFP  DLDAMAPI TP++S  E+  
Sbjct:   121 EKVLSLIQIWADAFKNQPDLNGVTQMYMELKNKGIEFPANDLDAMAPIYTPQRSVPEMPP 180

Query:   176 ----ASSHPVQRSKVPMGAAGDHDE---------RLTPEQVTKLHKDLEVVQANMAVFNE 222
                 A  H +    +   AA               LTPEQ  KL  +LE+V  NM++ +E
Sbjct:   181 QLVAAQQHTISPQHMAAAAAAAAAAAAPPSTGPLHLTPEQAAKLRSELEIVSNNMSILSE 240

Query:   223 MLNTLIPGQEHSSDIELITELHATCKAMQERIVQLISKYSQEDFITELLQVNDQLNNLFL 282
             ML+ L PGQE   D  L+ EL +TCK MQ RIV LI +   ++   E L++ND+LNN+FL
Sbjct:   241 MLSVLKPGQESPDDYALLNELTSTCKEMQSRIVDLIGRVQDDELTAEFLRINDELNNVFL 300

Query:   283 RFNRYESNREAAIG 296
             R  RYE NR    G
Sbjct:   301 RHQRYEKNRSQGQG 314
GO:0005622 "intracellular" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA
UNIPROTKB|Q6ZVM7 TOM1L2 "TOM1-like protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A5PK10 TOM1L2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O60784 TOM1 "Target of Myb protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B0QY01 TOM1 "Target of Myb protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BEE0 TOM1L2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060721-1 tom1 "target of myb1 (chicken)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00015561 C07A12.7 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
MGI|MGI:2443306 Tom1l2 "target of myb1-like 2 (chicken)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E7EPD0 TOM1 "Target of Myb protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5SRX1TM1L2_MOUSENo assigned EC number0.51790.80800.5562yesN/A
Q6ZVM7TM1L2_HUMANNo assigned EC number0.52440.80800.5562yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
cd03565141 cd03565, VHS_Tom1, VHS domain family, Tom1 subfami 1e-77
smart00288133 smart00288, VHS, Domain present in VPS-27, Hrs and 1e-52
pfam00790136 pfam00790, VHS, VHS domain 5e-49
cd03568144 cd03568, VHS_STAM, VHS domain family, STAM subfami 2e-44
cd03561133 cd03561, VHS, VHS domain family; The VHS domain is 2e-43
cd03569142 cd03569, VHS_Hrs_Vps27p, VHS domain family, Hrs an 3e-37
cd00197115 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain 4e-30
pfam0312799 pfam03127, GAT, GAT domain 3e-28
cd03567139 cd03567, VHS_GGA, VHS domain family, GGA subfamily 3e-20
pfam01417124 pfam01417, ENTH, ENTH domain 0.004
>gnl|CDD|239623 cd03565, VHS_Tom1, VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information 
 Score =  234 bits (598), Expect = 1e-77
 Identities = 94/143 (65%), Positives = 115/143 (80%), Gaps = 3/143 (2%)

Query: 15  PVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMY 74
           PVG  IE ATD +L SE+W LNMEICDIINETEDGPKDA++A++KRL     K++  +M 
Sbjct: 1   PVGQLIEKATDGSLQSEDWGLNMEICDIINETEDGPKDAVRALKKRL--NGNKNHKEVML 58

Query: 75  TLTVLETCVKNCNRRFHILVCSKDFIQE-LYKLIGPKNEPPIIVQDKVLSLIQSWADAFK 133
           TLTVLETCVKNC  RFH+LV  KDFI++ L KLI PKN PP IVQ+KVL+LIQ+WADAF+
Sbjct: 59  TLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR 118

Query: 134 DIPNLEGVNQIYQELRSKGIEFP 156
             P+L GV ++Y+EL+ KGIEFP
Sbjct: 119 GSPDLTGVVEVYEELKKKGIEFP 141

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways. Length = 141
>gnl|CDD|197630 smart00288, VHS, Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>gnl|CDD|216121 pfam00790, VHS, VHS domain Back     alignment and domain information
>gnl|CDD|239625 cd03568, VHS_STAM, VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>gnl|CDD|239620 cd03561, VHS, VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>gnl|CDD|239626 cd03569, VHS_Hrs_Vps27p, VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>gnl|CDD|238118 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>gnl|CDD|190532 pfam03127, GAT, GAT domain Back     alignment and domain information
>gnl|CDD|239624 cd03567, VHS_GGA, VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>gnl|CDD|216488 pfam01417, ENTH, ENTH domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 349
KOG1087|consensus 470 100.0
KOG1086|consensus 594 100.0
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 100.0
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 100.0
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 100.0
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 100.0
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 100.0
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 100.0
KOG2199|consensus462 100.0
cd03561133 VHS VHS domain family; The VHS domain is present i 100.0
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 99.93
KOG1818|consensus 634 99.91
PF03127100 GAT: GAT domain; InterPro: IPR004152 The GAT domai 99.87
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 97.92
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 97.79
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 97.69
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 97.59
cd03562114 CID CID (CTD-Interacting Domain) domain family; CI 97.48
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 97.19
KOG2056|consensus336 97.13
KOG0251|consensus 491 95.79
smart00582121 RPR domain present in proteins, which are involved 94.93
PF07651280 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an 92.97
KOG2374|consensus 661 91.97
PF1221096 Hrs_helical: Hepatocyte growth factor-regulated ty 89.26
KOG2057|consensus 499 86.57
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 83.86
KOG2160|consensus342 82.47
>KOG1087|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.3e-61  Score=481.19  Aligned_cols=270  Identities=39%  Similarity=0.648  Sum_probs=237.8

Q ss_pred             cHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCchhHHHHh
Q psy3857          15 PVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILV   94 (349)
Q Consensus        15 ~~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~~Fh~~i   94 (349)
                      +++.+|+|||++.+.+|||++||+|||+||.+..+++||+|+|+|||+ +  +++++|++||+|||+||||||+.||.+|
T Consensus         1 ~v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~~eAvralkKRi~-~--k~s~vq~lALtlLE~cvkNCG~~fh~~V   77 (470)
T KOG1087|consen    1 SVGKLIDKATSESLAEPDWALNLEICDLINSTEGGPKEAVRALKKRLN-S--KNSKVQLLALTLLETCVKNCGYSFHLQV   77 (470)
T ss_pred             ChHHHHHHhhcccccCccHHHHHHHHHHHhcCccCcHHHHHHHHHHhc-c--CCcHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            378999999999999999999999999999999999999999999999 6  9999999999999999999999999999


Q ss_pred             hcHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHhcCCCCCCCccccCCCCCCCCCCc
Q psy3857          95 CSKDFIQELYKLIGPKNEPPIIVQDKVLSLIQSWADAFKD-IPNLEGVNQIYQELRSKGIEFPMTDLDAMAPIITPKKSK  173 (349)
Q Consensus        95 ~~k~Fl~eL~kl~~~k~~~~~~Vk~kil~li~~W~~~f~~-~~~l~~i~~~y~~Lk~~G~~fP~~~~~~~~p~~tp~~s~  173 (349)
                      ++++||++||++++.+. ++..||+|||.||++|+++|++ +..++.+..+|++|+++||.||..+.+..+++.+|.+..
T Consensus        78 a~k~fL~emVk~~k~~~-~~~~Vr~kiL~LI~~W~~af~~~~~~~~~~~~~y~~l~~~G~~FP~r~~~sl~~~~pp~~~~  156 (470)
T KOG1087|consen   78 ASKEFLNEMVKRPKNKP-RDLKVREKILELIDTWQQAFCGPDGYLPDYYQIYDELRRKGVEFPQRDEESLAVLTPPAVLR  156 (470)
T ss_pred             HHHHHHHHHHhccccCC-cchhHHHHHHHHHHHHHHHccCCCCcchhHHHHHHHHHHcCCcCCCCccccccccCCCCCCC
Confidence            99999999999996542 5789999999999999999997 888999999999999999999999988888777765433


Q ss_pred             cccCCCCCcCCCCCC------CCCCCCCCCCChHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHH
Q psy3857         174 EVASSHPVQRSKVPM------GAAGDHDERLTPEQVTKLHKDLEVVQANMAVFNEMLNTLIPGQEHSSDIELITELHATC  247 (349)
Q Consensus       174 ~~~~~~~~~~s~~p~------~~~~~~~~~~~~e~~~kl~~el~~v~~n~~lL~emL~~~~p~~~~~~d~e~i~eL~~~c  247 (349)
                      ...+...++  ..|.      ...+...+..++++..++.++|++++++++||+|||.+++|++....+.|++.+|+.+|
T Consensus       157 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~seLe~~~~~~~ll~emL~~v~p~~~e~~~~el~~~L~~qc  234 (470)
T KOG1087|consen  157 PAPEPQEQS--GPPNEANASMKSMAGYPTEATPEVSTLSLSELESVKGKADLLSEMLNAVDPSDEEAAKDELLVDLVEQC  234 (470)
T ss_pred             CCCCchhhc--CCccccccccccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHH
Confidence            211111011  1011      11122233455678899999999999999999999999999999888999999999999


Q ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHhhhHHHHHHHHHHHHHhhh
Q psy3857         248 KAMQERIVQLISKYSQEDFITELLQVNDQLNNLFLRFNRYESN  290 (349)
Q Consensus       248 k~~q~~i~~li~~~~dee~l~~LL~~ND~L~~al~~Y~~~~~~  290 (349)
                      |.+|+||++||+++.||++|.++|++||+|+++|.+|+++.+|
T Consensus       235 r~~q~rv~~Li~~~~DE~ll~~lL~lND~L~~vL~~ye~~~~g  277 (470)
T KOG1087|consen  235 RSKQRRVMHLIEETSDEELLCELLKLNDELQRVLERYERIASG  277 (470)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999987

>KOG1086|consensus Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>KOG2199|consensus Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>KOG1818|consensus Back     alignment and domain information
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3 Back     alignment and domain information
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1 Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>KOG2056|consensus Back     alignment and domain information
>KOG0251|consensus Back     alignment and domain information
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA Back     alignment and domain information
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits Back     alignment and domain information
>KOG2374|consensus Back     alignment and domain information
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS) Back     alignment and domain information
>KOG2057|consensus Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG2160|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
1elk_A157 Vhs Domain Of Tom1 Protein From H. Sapiens Length = 2e-53
3rru_A152 X-Ray Crystal Structure Of The Vhs Domain Of Human 7e-26
3ldz_A140 Crystal Structure Of Human Stam1 Vhs Domain In Comp 4e-22
1x5b_A163 The Solution Structure Of The Vhs Domain Of Human S 3e-21
1wrd_A103 Crystal Structure Of Tom1 Gat Domain In Complex Wit 1e-19
3zyq_A226 Crystal Structure Of The Tandem Vhs And Fyve Domain 1e-16
1jpl_A171 Gga3 Vhs Domain Complexed With C-Terminal Peptide F 2e-14
1lf8_A171 Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal Ph 4e-14
3g2s_A149 Vhs Domain Of Human Gga1 Complexed With Sorla C-Ter 8e-13
1py1_A158 Complex Of Gga1-Vhs Domain And Beta-Secretase C-Ter 8e-13
1jwf_A147 Crystal Structure Of Human Gga1 Vhs Domain. Length 8e-13
1mhq_A148 Crystal Structure Of Human Gga2 Vhs Domain Length = 6e-12
1dvp_A220 Crystal Structure Of The Vhs And Fyve Tandem Domain 1e-11
>pdb|1ELK|A Chain A, Vhs Domain Of Tom1 Protein From H. Sapiens Length = 157 Back     alignment and structure 
Iteration: 1

 Score =  206 bits (523), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 95/149 (63%), Positives = 119/149 (79%), Gaps = 3/149 (2%)
Query: 10  NPFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDY 69
           NPF+SPVG +IE ATD +L SE+WALNMEICDIINETE+GPKDA++A++KR+     K++
Sbjct: 11  NPFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRI--VGNKNF 68
Query: 70  TVIMYTLTVLETCVKNCNRRFHILVCSKDFIQE-LYKLIGPKNEPPIIVQDKVLSLIQSW 128
             +M  LTVLETCVKNC  RFH+LV S+DF++  L + I PKN PP IV DKVL+LIQSW
Sbjct: 69  HEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128
Query: 129 ADAFKDIPNLEGVNQIYQELRSKGIEFPM 157
           ADAF+  P+L GV  IY++LR KG+EFPM
Sbjct: 129 ADAFRSSPDLTGVVTIYEDLRRKGLEFPM 157
>pdb|3RRU|A Chain A, X-Ray Crystal Structure Of The Vhs Domain Of Human Tom1-Like Protein, Northeast Structural Genomics Consortium Target Hr3050e Length = 152 Back     alignment and structure
>pdb|3LDZ|A Chain A, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 140 Back     alignment and structure
>pdb|1X5B|A Chain A, The Solution Structure Of The Vhs Domain Of Human Signal Transducing Adaptor Molecule 2 Length = 163 Back     alignment and structure
>pdb|1WRD|A Chain A, Crystal Structure Of Tom1 Gat Domain In Complex With Ubiquitin Length = 103 Back     alignment and structure
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) At 1.48 A Resolution Length = 226 Back     alignment and structure
>pdb|1JPL|A Chain A, Gga3 Vhs Domain Complexed With C-Terminal Peptide From Cation-Independent Mannose 6-Phosphate Receptor Length = 171 Back     alignment and structure
>pdb|1LF8|A Chain A, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal Phosphopeptide Length = 171 Back     alignment and structure
>pdb|3G2S|A Chain A, Vhs Domain Of Human Gga1 Complexed With Sorla C-Terminal Peptide Length = 149 Back     alignment and structure
>pdb|1PY1|A Chain A, Complex Of Gga1-Vhs Domain And Beta-Secretase C-Terminal Phosphopeptide Length = 158 Back     alignment and structure
>pdb|1JWF|A Chain A, Crystal Structure Of Human Gga1 Vhs Domain. Length = 147 Back     alignment and structure
>pdb|1MHQ|A Chain A, Crystal Structure Of Human Gga2 Vhs Domain Length = 148 Back     alignment and structure
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of Hrs, A Protein Involved In Membrane Trafficking And Signal Transduction Length = 220 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 7e-60
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 2e-56
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 3e-53
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 2e-52
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 4e-52
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 3e-50
3g2s_A149 C-terminal fragment of sortilin-related receptor; 2e-49
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 2e-49
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 2e-48
1wrd_A103 TOM1, target of MYB protein 1; three-helix bundle, 1e-31
1wr6_A111 ADP-ribosylation factor binding protein GGA3; thre 8e-26
1oxz_A186 ADP-ribosylation factor binding protein GGA1; GAT 3e-23
1o3x_A140 ADP-ribosylation factor binding protein GGA1; prot 3e-22
1naf_A158 ADP-ribosylation factor binding protein GGA1, golg 5e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Length = 157 Back     alignment and structure
 Score =  189 bits (480), Expect = 7e-60
 Identities = 98/158 (62%), Positives = 122/158 (77%), Gaps = 4/158 (2%)

Query: 1   MASFFGTAFNPFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKR 60
           M S F    NPF+SPVG +IE ATD +L SE+WALNMEICDIINETE+GPKDA++A++KR
Sbjct: 3   MGSDFLLG-NPFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKR 61

Query: 61  LQQYAGKDYTVIMYTLTVLETCVKNCNRRFHILVCSKDFIQE-LYKLIGPKNEPPIIVQD 119
           +     K++  +M  LTVLETCVKNC  RFH+LV S+DF++  L + I PKN PP IV D
Sbjct: 62  IVGN--KNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHD 119

Query: 120 KVLSLIQSWADAFKDIPNLEGVNQIYQELRSKGIEFPM 157
           KVL+LIQSWADAF+  P+L GV  IY++LR KG+EFPM
Sbjct: 120 KVLNLIQSWADAFRSSPDLTGVVTIYEDLRRKGLEFPM 157
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Length = 163 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Length = 171 Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Length = 152 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} Length = 140 Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Length = 148 Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Length = 149 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Length = 226 Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Length = 220 Back     alignment and structure
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1 Length = 103 Back     alignment and structure
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G Length = 111 Back     alignment and structure
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1 Length = 186 Back     alignment and structure
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A Length = 140 Back     alignment and structure
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1 Length = 158 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query349
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 100.0
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 100.0
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 100.0
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 100.0
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 100.0
3g2s_A149 C-terminal fragment of sortilin-related receptor; 100.0
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 100.0
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 100.0
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 100.0
1oxz_A186 ADP-ribosylation factor binding protein GGA1; GAT 99.92
1wrd_A103 TOM1, target of MYB protein 1; three-helix bundle, 99.91
1o3x_A140 ADP-ribosylation factor binding protein GGA1; prot 99.89
1wr6_A111 ADP-ribosylation factor binding protein GGA3; thre 99.88
1naf_A158 ADP-ribosylation factor binding protein GGA1, golg 99.85
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 97.91
1sz9_A144 PCF11 protein; RNA polymerase II CTD interacting d 97.82
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 97.69
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 97.59
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 97.52
2pjw_H88 Uncharacterized protein YHL002W; GAT domain, core 97.45
2pjw_V91 Vacuolar protein sorting-associated protein 27; GA 97.34
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 97.21
3d9j_A145 RNA-binding protein 16; SCAF8, RNA polymerase II C 96.13
4flb_A132 Regulation of nuclear PRE-mRNA domain-containing; 95.54
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 94.62
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 94.46
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 94.11
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 92.14
4fu3_A135 Regulation of nuclear PRE-mRNA domain-containing 1 91.5
3f1i_S77 STAM-1, signal transducing adapter molecule 1; HGS 90.38
3f1i_H98 Hepatocyte growth factor-regulated tyrosine kinas 89.84
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 86.43
2km4_A142 Regulator of TY1 transposition protein 103; CTD-in 84.73
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 83.16
3clj_A157 Protein NRD1; CTD-interacting domain, nucleus, pho 82.98
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 81.37
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 80.83
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
Probab=100.00  E-value=1.5e-49  Score=345.84  Aligned_cols=152  Identities=63%  Similarity=1.098  Sum_probs=146.0

Q ss_pred             CcCCCCCCCCCCCcHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy3857           2 ASFFGTAFNPFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLET   81 (349)
Q Consensus         2 ~~~~~~~~~p~st~~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~   81 (349)
                      |+||+.  +||+++++.+|++||++.+.++||++|++|||+||+++++|++|+|+|+|||+++  +|+++|++||+|||+
T Consensus         5 m~f~~~--~p~~s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~--~n~~v~l~AL~LLd~   80 (157)
T 1elk_A            5 SDFLLG--NPFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGN--KNFHEVMLALTVLET   80 (157)
T ss_dssp             CCCCCS--CGGGSHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHH
T ss_pred             CCCcCC--CCCCcHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccC--CCHHHHHHHHHHHHH
Confidence            788884  9999999999999999999999999999999999999999999999999999844  899999999999999


Q ss_pred             HHhcCchhHHHHhhcHHHHHH-HHHHhCCCCCCChhHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCCCCC
Q psy3857          82 CVKNCNRRFHILVCSKDFIQE-LYKLIGPKNEPPIIVQDKVLSLIQSWADAFKDIPNLEGVNQIYQELRSKGIEFPM  157 (349)
Q Consensus        82 ~vkNcG~~Fh~~i~~k~Fl~e-L~kl~~~k~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~Lk~~G~~fP~  157 (349)
                      ||||||++||.+|++++|+++ |++++.+++.++..||+||+++|+.|+.+|+++|++.+|.++|+.||++||.||.
T Consensus        81 ~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~~p~l~~i~~~Y~~Lk~~G~~FP~  157 (157)
T 1elk_A           81 CVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPDLTGVVTIYEDLRRKGLEFPM  157 (157)
T ss_dssp             HHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC
Confidence            999999999999999999999 8999988877778999999999999999999999999999999999999999994
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1 Back     alignment and structure
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1 Back     alignment and structure
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A Back     alignment and structure
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G Back     alignment and structure
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1 Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae} Back     alignment and structure
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae} Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A Back     alignment and structure
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens} Back     alignment and structure
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A* Back     alignment and structure
>3f1i_S STAM-1, signal transducing adapter molecule 1; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens} Back     alignment and structure
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens} Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A* Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 349
d1elka_153 a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) 1e-60
d1dvpa1145 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila mel 1e-53
d1juqa_151 a.118.9.2 (A:) ADP-ribosylation factor binding pro 3e-51
d1mhqa_143 a.118.9.2 (A:) ADP-ribosylation factor binding pro 2e-50
d1ujka_145 a.118.9.2 (A:) ADP-ribosylation factor binding pro 9e-50
d1wrda193 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 2e-29
d1wr6a190 a.7.8.1 (A:211-300) ADP-ribosylation factor bindin 1e-23
d1o3xa_112 a.7.8.1 (A:) ADP-ribosylation factor binding prote 3e-23
d1hf8a2131 a.118.9.3 (A:19-149) Clathrin assembly lymphoid my 1e-07
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Tom1 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  189 bits (481), Expect = 1e-60
 Identities = 94/149 (63%), Positives = 119/149 (79%), Gaps = 3/149 (2%)

Query: 10  NPFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDY 69
           NPF+SPVG +IE ATD +L SE+WALNMEICDIINETE+GPKDA++A++KR+     K++
Sbjct: 7   NPFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGN--KNF 64

Query: 70  TVIMYTLTVLETCVKNCNRRFHILVCSKDFIQELY-KLIGPKNEPPIIVQDKVLSLIQSW 128
             +M  LTVLETCVKNC  RFH+LV S+DF++ +  + I PKN PP IV DKVL+LIQSW
Sbjct: 65  HEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 124

Query: 129 ADAFKDIPNLEGVNQIYQELRSKGIEFPM 157
           ADAF+  P+L GV  IY++LR KG+EFPM
Sbjct: 125 ADAFRSSPDLTGVVTIYEDLRRKGLEFPM 153
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 145 Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Length = 145 Back     information, alignment and structure
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93 Back     information, alignment and structure
>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Length = 112 Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query349
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 100.0
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 100.0
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 100.0
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 100.0
d1wrda193 Target of Myb protein 1, TOM1 {Human (Homo sapiens 99.92
d1wr6a190 ADP-ribosylation factor binding protein Gga3 {Huma 99.88
d1o3xa_112 ADP-ribosylation factor binding protein Gga1 {Huma 99.86
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 98.92
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 97.78
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 97.61
d1szaa_144 PCF11 protein {Baker's yeast (Saccharomyces cerevi 97.42
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Tom1 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-47  Score=327.89  Aligned_cols=147  Identities=64%  Similarity=1.107  Sum_probs=139.8

Q ss_pred             CCCCCCcHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhcCch
Q psy3857           9 FNPFASPVGSKIEMATDPTLASENWALNMEICDIINETEDGPKDAIKAIRKRLQQYAGKDYTVIMYTLTVLETCVKNCNR   88 (349)
Q Consensus         9 ~~p~st~~~~~I~~AT~~~~~~~dw~~~l~icD~In~~~~~~~eA~ral~krl~~~~~~n~~~~l~AL~LLd~~vkNcG~   88 (349)
                      |+||+|+++++|++||++.+++|||++|++|||+||+++++|++|+|+|+|||+++  +||++|++||.|||+||||||.
T Consensus         6 ~~p~~t~~~~~vekAT~~~l~~~dw~~il~icD~In~~~~~~k~a~ral~krL~~~--~n~~v~l~aL~LLe~~vkNCG~   83 (153)
T d1elka_           6 GNPFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGN--KNFHEVMLALTVLETCVKNCGH   83 (153)
T ss_dssp             SCGGGSHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSCH
T ss_pred             CCCCCChHHHHHHHHcCCCCCcccHHHHHHHHHHHhCCCcCHHHHHHHHHHHHccC--CCHHHHHHHHHHHHHHHHHccH
Confidence            58999999999999999999999999999999999999999999999999999734  8999999999999999999999


Q ss_pred             hHHHHhhcHHHHHHH-HHHhCCCCCCChhHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCCCCC
Q psy3857          89 RFHILVCSKDFIQEL-YKLIGPKNEPPIIVQDKVLSLIQSWADAFKDIPNLEGVNQIYQELRSKGIEFPM  157 (349)
Q Consensus        89 ~Fh~~i~~k~Fl~eL-~kl~~~k~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~Lk~~G~~fP~  157 (349)
                      +||.+|++++|+++| ++++.+++.++..||+||+++|+.|+.+|+++|++..|.++|++|+++||.||.
T Consensus        84 ~fh~evas~~Fl~~ll~~~~~~~~~~~~~Vk~kil~li~~W~~~f~~~p~~~~i~~~y~~Lk~~G~~FP~  153 (153)
T d1elka_          84 RFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPDLTGVVTIYEDLRRKGLEFPM  153 (153)
T ss_dssp             HHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHCCCCCCC
Confidence            999999999999995 677777777788999999999999999999999999999999999999999993
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure