Psyllid ID: psy3899

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920---
Protein Sequence
MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKLINP
Secondary Structure (PSIPRED)
cEEEccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHccccHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccHHHHccccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHccccHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccccHHHHHHHHHccHHHHccccccccHHHHHHHccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccccccccccccccHHHcHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHcccccccccccccccHHHHHHHccccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccHHHccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccEEEEEEEccccHHHcHHHcHHHEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccHHHHHHccHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHccHHHHccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccEEEEEEEccccHHHHHHHHHHHHEEccc
Coil and Loop (DISEMBL)
MKYFISQGAIVDaiggdlqatplhwatrqgHLDSVVLLIQhgadptlmdsegstciHQAAQFGHTRIVAYLVAKGInvnlqdrngMTALMWSAYKvfsldptrllitFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHtssleipnaqgltpfmlleenigapwlgkaTVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMfderlfkilplpvyfaTKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFikcwkgdpgvitapqdEKFRYIIELAergtfeplsfcstclvrkpirskhcsicnrcvakfdhhcpwvgncigaknhKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTtnermnanryhhfianpqgqfispfhrgrlqnfvdftgwscfglfkperidwmkryevyteptslsdkyqfveagqdvnepdseTVTLLHWAAINNRIEIMKYFISQGAIVDaiggdlqatplhwatrqgHLDSVVLLIQhgadptlmdsegstciHQAAQFGHTRIVAYLVAKGInvnlqdrngMTALMWSAYKvfsldptrllitFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHtssleipnaqgltpfmlleenigapwlgkaTVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMfderlfkilplpvyfaTKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFikcwkgdpgvitapqdEKFRYIIELAergtfeplsfcstclvrkpirskhcsiCNRCVAKLINP
Flexible Loop (DISEMBL)
MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKdhyntqqniihrfsksktTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAergtfeplsfCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKdhyntqqniihrfsksktTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAergtfeplsfCSTClvrkpirskhcsicnrcvaklinp
Low Complexity Region (SEG)
MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPvvnffvsllffstsgvlWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPvvnffvsllffstsgvlWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKLINP
Disordered region (IsUnstruct)
**YFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDV****SETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKLI**
Disordered Region (DISOPRED)
MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKLINP
Disordered Region (DISEMBL)
MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKLINP
Disordered Region (DISPRO)
MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKLINP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKLINP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	923	2.2.26 [Sep-21-2011]
Q80TN5	632	Palmitoyltransferase ZDHH	yes	N/A	0.567	0.829	0.456	1e-142
Q8IUH5	632	Palmitoyltransferase ZDHH	yes	N/A	0.567	0.829	0.454	1e-141
Q5NVB9	622	Palmitoyltransferase ZDHH	no	N/A	0.539	0.800	0.372	1e-97
Q8IUH4	622	Palmitoyltransferase ZDHH	no	N/A	0.539	0.800	0.370	9e-96
Q9CWU2	622	Palmitoyltransferase ZDHH	no	N/A	0.552	0.819	0.371	4e-95
Q4R690	622	Palmitoyltransferase ZDHH	N/A	N/A	0.554	0.823	0.370	1e-94
Q6C520	702	Palmitoyltransferase AKR1	yes	N/A	0.470	0.618	0.310	1e-52
Q7S3M5	729	Palmitoyltransferase AKR1	N/A	N/A	0.485	0.614	0.301	3e-51
P0CS66	776	Palmitoyltransferase AKR1	yes	N/A	0.491	0.585	0.306	8e-51
P0CS67	776	Palmitoyltransferase AKR1	N/A	N/A	0.491	0.585	0.306	8e-51

>sp|Q80TN5|ZDH17_MOUSE Palmitoyltransferase ZDHHC17 OS=Mus musculus GN=Zdhhc17 PE=1 SV=2

 Score =  505 bits (1300), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 244/535 (45%), Positives = 347/535 (64%), Gaps = 11/535 (2%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +KY+IS+GAIVD +GGDL +TPLHWATRQGHL  VV L+++GADP+L+D EG +CIH AA
Sbjct: 106 VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA 165

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
           QFGHT IVAYL+AKG +V++ D+NGMT LMW+AY+  S+DPTRLL+TF  S  + DK H 
Sbjct: 166 QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK 225

Query: 121 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL 180
           N ALHWA+ A N   I+ L+    +++  N +G +   L ++     W+    ++ + E 
Sbjct: 226 NTALHWAVLAGNTTVISLLLEAGGNVDAQNVKGESALDLAKQRKNV-WM----INHLQEA 280

Query: 181 KDHYNTQQ-NIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQI-AYMAKLALFISLYI 238
           +        + + +    K  R + M   PF++  L+GFI    I +++ K  ++  ++ 
Sbjct: 281 RQAKGYDNPSFLRKLKADKEFRQKVMLGTPFLVIWLVGFIADLDIDSWLIKGLMYGGVWA 340

Query: 239 VMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNF-FVSLLFFSTSGVLWY 297
            +Q +    FD  +   LPL +Y ATKFW+Y+TW FW    +NF F+ L F + S  L+Y
Sbjct: 341 TVQFLSKSFFDHSMHSALPLGIYLATKFWMYVTWFFWFWNDLNFLFIHLPFLANSVALFY 400

Query: 298 NFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCV 357
           NF K WK DPG+I A +++K + I+ELAE G+ +   FCSTCL+RKP+RSKHC +CNRC+
Sbjct: 401 NFGKSWKSDPGIIKATEEQKKKTIVELAETGSLDLSIFCSTCLIRKPVRSKHCGVCNRCI 460

Query: 358 AKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMF 417
           AKFDHHCPWVGNC+GA NH+YF+GY+  LLFM C+++YG   YW   C+   + +    +
Sbjct: 461 AKFDHHCPWVGNCVGAGNHRYFMGYLFFLLFMICWMIYGCVSYWGLHCETTYTKDGFWTY 520

Query: 418 VVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANP 477
           +   +  C  W+ ++ LN+  H +W+ VLL CQLYQI  LG+TTNERMNA RY HF    
Sbjct: 521 IT-QIATCSPWMFWMFLNSVFHFLWVAVLLMCQLYQITCLGITTNERMNARRYKHFKVTT 579

Query: 478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFV 532
                SPF+ G ++N +DF  + C GLF+P  +DW ++Y +  +  S S  YQ V
Sbjct: 580 T-SIESPFNHGCVRNIIDFFEFRCCGLFRPVIVDWTRQYTIEYDQISGSG-YQLV 632

Palmitoyltransferase specific for a subset of neuronal proteins, including SNAP25, DLG4/PSD95, GAD2, SYT1 and HD. May be involved in the sorting or targeting of critical proteins involved in the initiating events of endocytosis at the plasma membrane. Has transforming activity. Mediates Mg(2+) transport.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: -

>sp|Q8IUH5|ZDH17_HUMAN Palmitoyltransferase ZDHHC17 OS=Homo sapiens GN=ZDHHC17 PE=1 SV=2

 Score =  503 bits (1295), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 243/535 (45%), Positives = 348/535 (65%), Gaps = 11/535 (2%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +KY+IS+GAIVD +GGDL +TPLHWATRQGHL  VV L+++GADP+L+D EG +CIH AA
Sbjct: 106 VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA 165

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
           QFGHT IVAYL+AKG +V++ D+NGMT LMW+AY+  S+DPTRLL+TF  S  + DK H 
Sbjct: 166 QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK 225

Query: 121 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL 180
           N ALHWA+ A N   I+ L+   ++++  N +G +   L ++     W+    ++ + E 
Sbjct: 226 NTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNV-WM----INHLQEA 280

Query: 181 KDHYNTQQ-NIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQI-AYMAKLALFISLYI 238
           +        + + +    K  R + M   PF++  L+GFI    I +++ K  ++  ++ 
Sbjct: 281 RQAKGYDNPSFLRKLKADKEFRQKVMLGTPFLVIWLVGFIADLNIDSWLIKGLMYGGVWA 340

Query: 239 VMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNF-FVSLLFFSTSGVLWY 297
            +Q +    FD  +   LPL +Y ATKFW+Y+TW FW    +NF F+ L F + S  L+Y
Sbjct: 341 TVQFLSKSFFDHSMHSALPLGIYLATKFWMYVTWFFWFWNDLNFLFIHLPFLANSVALFY 400

Query: 298 NFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCV 357
           NF K WK DPG+I A +++K + I+ELAE G+ +   FCSTCL+RKP+RSKHC +CNRC+
Sbjct: 401 NFGKSWKSDPGIIKATEEQKKKTIVELAETGSLDLSIFCSTCLIRKPVRSKHCGVCNRCI 460

Query: 358 AKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMF 417
           AKFDHHCPWVGNC+GA NH+YF+GY+  LLFM C+++YG   YW   C+   + +    +
Sbjct: 461 AKFDHHCPWVGNCVGAGNHRYFMGYLFFLLFMICWMIYGCISYWGLHCETTYTKDGFWTY 520

Query: 418 VVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANP 477
           +   +  C  W+ ++ LN+  H +W+ VLL CQ+YQI  LG+TTNERMNA RY HF    
Sbjct: 521 IT-QIATCSPWMFWMFLNSVFHFMWVAVLLMCQMYQISCLGITTNERMNARRYKHFKVTT 579

Query: 478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFV 532
                SPF+ G ++N +DF  + C GLF+P  +DW ++Y +  +  S S  YQ V
Sbjct: 580 T-SIESPFNHGCVRNIIDFFEFRCCGLFRPVIVDWTRQYTIEYDQISGSG-YQLV 632

Palmitoyltransferase specific for a subset of neuronal proteins, including SNAP25, DLG4/PSD95, GAD2, SYT1 and HD. May be involved in the sorting or targeting of critical proteins involved in the initiating events of endocytosis at the plasma membrane. Has transforming activity. Mediates Mg(2+) transport.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q5NVB9|ZDH13_PONAB Palmitoyltransferase ZDHHC13 OS=Pongo abelii GN=ZDHHC13 PE=2 SV=1

 Score =  358 bits (919), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 202/542 (37%), Positives = 292/542 (53%), Gaps = 44/542 (8%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +K++IS+GA+VD +GGDL +TPLHWA RQGHL  V+LL+QHGADPTL+D EG + IH A 
Sbjct: 98  VKFYISKGAVVDQLGGDLNSTPLHWAIRQGHLPMVILLLQHGADPTLIDGEGFSSIHLAV 157

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
            F H  I+AYL++KG +VN+ D NG T LM SA+KV   +PT  L+ F  S  + DKIH 
Sbjct: 158 LFQHMPIIAYLISKGQSVNMTDVNGQTPLMLSAHKVIGPEPTGFLLKFNPSLNVVDKIHQ 217

Query: 121 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL 180
           N  LHWA+ A N  A+  L+   SSL+I N +G TP  +  +                  
Sbjct: 218 NTPLHWAVAAGNVNAVDKLLEAGSSLDIQNVKGETPLDMALQ------------------ 259

Query: 181 KDHYNTQQNIIHRFSKSKTTRARYMFAL--------PFVMFGL-------IGFIFQ-AQI 224
               N  Q IIH        RA   F L         F++  L       +G+I      
Sbjct: 260 ----NKNQLIIHMLKTEAKMRANQKFRLWRWLQKCELFLLLMLSVITMWAVGYILDFNSD 315

Query: 225 AYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVN--- 281
           +++ K  L ++L+ +  +    +   +    LP     ++ FWI++TW     P +    
Sbjct: 316 SWLLKGCLLVTLFFLTSLFPRFLVGYKNLVYLPTAFLLSSVFWIFMTWFILFFPDLAGAP 375

Query: 282 FFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLV 341
           F+ S + FS    L++ F K W  DPG   A ++EK   II LAE G+ +  +FC++CL+
Sbjct: 376 FYFSFI-FSIVAFLYF-FYKTWATDPGFTKASEEEKKVNIITLAETGSLDFRTFCTSCLI 433

Query: 342 RKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYW 401
           RKP+RS HC +CN CVA++D HC W G CIG  NH Y++ ++  L  +C +++YG   YW
Sbjct: 434 RKPLRSLHCHVCNSCVARYDQHCLWTGRCIGFGNHHYYIFFLFFLSMVCGWIIYGSFIYW 493

Query: 402 KSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTT 461
            S C      E  +   +  ++ C  WV +IL+ A  H  W T LL  QL+QI  LG+T+
Sbjct: 494 SSHCATTFK-EDGLWTYLNQIVACSPWVLYILMLATFHFSWSTFLLLNQLFQIAFLGLTS 552

Query: 462 NERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTE 521
           +ER++  +    +        +P++ G +QN  DF    CFGL KP  +DW  +Y V   
Sbjct: 553 HERISLQKQSKHMKQTLSLRKTPYNLGFMQNLADFFQCGCFGLVKPCVVDWTSQYTVVFH 612

Query: 522 PT 523
           P 
Sbjct: 613 PA 614

Palmitoyltransferase for HD and GAD2 (By similarity). Mediates Mg(2+) transport.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q8IUH4|ZDH13_HUMAN Palmitoyltransferase ZDHHC13 OS=Homo sapiens GN=ZDHHC13 PE=2 SV=3

 Score =  352 bits (902), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 201/542 (37%), Positives = 291/542 (53%), Gaps = 44/542 (8%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +K++IS+GA+VD +GGDL +TPLHWA RQGHL  V+LL+QHGADPTL+D EG + IH A 
Sbjct: 98  VKFYISKGAVVDQLGGDLNSTPLHWAIRQGHLPMVILLLQHGADPTLIDGEGFSSIHLAV 157

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
            F H  I+AYL++KG +VN+ D NG T LM SA+KV   +PT  L+ F  S  + DKIH 
Sbjct: 158 LFQHMPIIAYLISKGQSVNMTDVNGQTPLMLSAHKVIGPEPTGFLLKFNPSLNVVDKIHQ 217

Query: 121 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL 180
           N  LHWA+ A N  A+  L+   SSL+I N +G TP  +  +                  
Sbjct: 218 NTPLHWAVAAGNVNAVDKLLEAGSSLDIQNVKGETPLDMALQ------------------ 259

Query: 181 KDHYNTQQNIIHRFSKSKTTRARYMFAL--------PFVMFGL-------IGFIFQ-AQI 224
               N  Q IIH        RA   F L         F++  L       IG+I      
Sbjct: 260 ----NKNQLIIHMLKTEAKMRANQKFRLWRWLQKCELFLLLMLSVITMWAIGYILDFNSD 315

Query: 225 AYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVN--- 281
           +++ K  L ++L+ +  +    +   +    LP     ++ FWI++TW     P +    
Sbjct: 316 SWLLKGCLLVTLFFLTSLFPRFLVGYKNLVYLPTAFLLSSVFWIFMTWFILFFPDLAGAP 375

Query: 282 FFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLV 341
           F+ S + FS    L++ F K W  DPG   A ++EK   II LAE G+ +  +FC++CL+
Sbjct: 376 FYFSFI-FSIVAFLYF-FYKTWATDPGFTKASEEEKKVNIITLAETGSLDFRTFCTSCLI 433

Query: 342 RKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYW 401
           RKP+RS HC +CN CVA++D HC W G CIG  NH Y++ ++  L  +C +++YG   Y 
Sbjct: 434 RKPLRSLHCHVCNCCVARYDQHCLWTGRCIGFGNHHYYIFFLFFLSMVCGWIIYGSFIYL 493

Query: 402 KSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTT 461
            S C      E  +   +  ++ C  WV +IL+ A  H  W T LL  QL+QI  LG+T+
Sbjct: 494 SSHCATTFK-EDGLWTYLNQIVACSPWVLYILMLATFHFSWSTFLLLNQLFQIAFLGLTS 552

Query: 462 NERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTE 521
           +ER++  +    +        +P++ G +QN  DF    CFGL KP  +DW  +Y +   
Sbjct: 553 HERISLQKQSKHMKQTLSLRKTPYNLGFMQNLADFFQCGCFGLVKPCVVDWTSQYTMVFH 612

Query: 522 PT 523
           P 
Sbjct: 613 PA 614

Palmitoyltransferase for HD and GAD2 (By similarity). Mediates Mg(2+) transport.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q9CWU2|ZDH13_MOUSE Palmitoyltransferase ZDHHC13 OS=Mus musculus GN=Zdhhc13 PE=1 SV=2

 Score =  350 bits (897), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 196/528 (37%), Positives = 291/528 (55%), Gaps = 18/528 (3%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +K++IS+GA++D +GGDL +TPLHWA RQGHL  V+LL+QHGADPTL+D EG + IH A 
Sbjct: 98  VKFYISKGAVIDQLGGDLNSTPLHWAIRQGHLPMVILLLQHGADPTLIDGEGFSSIHLAV 157

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
            F H  I+AYL++KG +VN+ D NG T LM SAYKV   +PT  L+ F  S ++ DK H 
Sbjct: 158 LFQHMPIIAYLISKGQSVNMTDVNGQTPLMLSAYKVIGPEPTGFLLKFNPSLSVVDKTHQ 217

Query: 121 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPF-MLLEENIGAPWLGKATVDKI-- 177
           N  LHWA+ A N  A+  L+   SSL+I NA+G TP  M L+            +  +  
Sbjct: 218 NTPLHWAVAAGNVSAVDKLLEAGSSLDIRNAKGETPLDMALQSK-------NQLISHMLR 270

Query: 178 TELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQ-AQIAYMAKLALFISL 236
           TE K   N Q  +     K +      +  L  +    +G+I      +++ K  L ++L
Sbjct: 271 TEAKMRANKQFRLWRWLHKCELF---LLLILSMITLWAVGYILDFNSDSWLLKGCLLVAL 327

Query: 237 YIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITW--LFWITPVVNFFVSLLFFSTSGV 294
           + +  +    +   +    LP     ++ FWI++TW  LF+     +       FS    
Sbjct: 328 FFLTSLFPRFLVGYKNLVYLPTVFLLSSIFWIFMTWFILFFPDTAGSPLYFAFIFSIMAF 387

Query: 295 LWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICN 354
           L++ F K W  DPG   A ++E+   I+ LAE G+ +  +FC++CL+RKP+RS HC +CN
Sbjct: 388 LYF-FYKTWATDPGFTKASEEERKVNIVTLAETGSLDFRTFCTSCLIRKPLRSLHCHVCN 446

Query: 355 RCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHERE 414
            CVA+FD HC W G CIG  NH +++ ++ SL  +C +++YG   YW + C      E  
Sbjct: 447 SCVARFDQHCFWTGRCIGFGNHHHYIFFLLSLSMVCDWIIYGSFVYWSNHCATTFK-EDG 505

Query: 415 VMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFI 474
           +   +  ++ C  WV +I + A  H  W T LL  QL+QI  LG+T++ER++  +    +
Sbjct: 506 LWTYLNQIVACSPWVLYIFMLAAFHFSWSTFLLINQLFQIAFLGLTSHERISLLKQSRHM 565

Query: 475 ANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEP 522
                   +P++ G  QN  DF    CFGL KP  IDW  +Y +   P
Sbjct: 566 KQTLSLRKTPYNLGFTQNLADFFQCGCFGLVKPCIIDWTSQYTMVFHP 613

Palmitoyltransferase for HD and GAD2. Mediates Mg(2+) transport.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q4R690|ZDH13_MACFA Palmitoyltransferase ZDHHC13 OS=Macaca fascicularis GN=ZDHHC13 PE=2 SV=1

 Score =  348 bits (893), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 195/526 (37%), Positives = 289/526 (54%), Gaps = 14/526 (2%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +K++IS+GA+VD +GGDL +TPLHWA RQGHL  V+LL+QHGADPTL D EG + IH A 
Sbjct: 98  VKFYISKGAVVDQLGGDLNSTPLHWAIRQGHLPMVILLLQHGADPTLTDGEGFSSIHLAV 157

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
            F H  I+AYL++K  +VN+ D NG T LM SA+KV   +PT  L+ F  S  + DKIH 
Sbjct: 158 LFQHMPIIAYLISKRQSVNMTDVNGQTPLMLSAHKVIGPEPTGFLLKFNPSLNVVDKIHQ 217

Query: 121 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL 180
           N  LHWA+ A N  A+  L+   SSL+I N +G TP  +  +N     +        TE 
Sbjct: 218 NTPLHWAVAAGNVNAVDKLLEAGSSLDIQNVKGETPLDMALQNKNQLIIHMLK----TEA 273

Query: 181 KDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQ-AQIAYMAKLALFISLYIV 239
           K   N +  +     K +      +  L  +    +G+I      +++ K  L ++L+ +
Sbjct: 274 KMRTNQKFRLWRWLQKCELF---LLLMLSVITMWAVGYILDFNSDSWLLKGCLLVTLFFL 330

Query: 240 MQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVN---FFVSLLFFSTSGVLW 296
             +    +   +    LP     ++ FWI++TW     P +    F+ S + FS    L+
Sbjct: 331 TSLFPRFLVGYKNLIYLPTAFLLSSIFWIFMTWFILFFPDLAGAPFYFSFI-FSIVAFLY 389

Query: 297 YNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRC 356
           + F K W  DPG   A ++EK   II LAE G  +  +FC++CL+RKP+RS HC +CN C
Sbjct: 390 F-FYKTWATDPGFTKASEEEKKVNIITLAETGCLDFRTFCTSCLIRKPLRSLHCHVCNSC 448

Query: 357 VAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVM 416
           VA++D HC W G CIG  NH Y++ ++  L  +C +++YG   YW + C      E  + 
Sbjct: 449 VARYDQHCLWTGRCIGFGNHHYYIFFLFFLSMVCGWIIYGSFIYWSNHCATTFK-EDGLW 507

Query: 417 FVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIAN 476
             +  ++ C  WV +IL+ A  H  W T LL  QL+QI  LG+T++ER++  +    +  
Sbjct: 508 TYLNQIVACSPWVLYILMLATFHFSWSTFLLLNQLFQIAFLGLTSHERISLLKQSKHMKQ 567

Query: 477 PQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEP 522
                 +P++ G +QN  DF    CFGL KP  +DW  +Y +   P
Sbjct: 568 TLSLRKTPYNLGFMQNLADFFQCGCFGLVKPCVVDWTSQYTMVFHP 613

Palmitoyltransferase for HD and GAD2 (By similarity). Mediates Mg(2+) transport.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q6C520|AKR1_YARLI Palmitoyltransferase AKR1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=AKR1 PE=3 SV=1

 Score =  209 bits (531), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 156/503 (31%), Positives = 236/503 (46%), Gaps = 69/503 (13%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           +Y + QGA+VDA GG L  TPLHWA R+G +  V  LIQ+GADP   D +G   +H A  
Sbjct: 101 QYLVEQGAVVDAKGGQLNGTPLHWACRRGLVYIVHYLIQNGADPLRSDVQGYNALHLATH 160

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
             +  ++ YL+ +G+ V+ QD NG TAL W+AY+  +L    +L+ +G+   I D   G 
Sbjct: 161 SSNVMLLVYLLHQGLPVDCQDPNGRTALHWAAYQGDALS-VDVLLRWGSDVKITD-TQGF 218

Query: 122 VALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP-FMLLEENIGAPWLGKATVDKITEL 180
           + LHW I   +  ++  L+   S +   ++ G TP  M  E N  A   G   +D     
Sbjct: 219 LPLHWGIVNGSRNSLARLIEEGSDMYAKSSDGKTPHVMAAEMNTTAQLEG--ALDDCGRF 276

Query: 181 KDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFIS-LYIV 239
            D   +Q+    ++  ++TT     F  PF++  L+G +          L  F   ++ +
Sbjct: 277 PD--GSQKT---KYFDARTTNLLCFFT-PFILI-LLGLV----------LCTFCGPIFGI 319

Query: 240 MQVIGTVMFDERLFKILPLP-----------------VYFATKFWIYITWL-------FW 275
           +  + T+    +L K L LP                 ++  + FW+ + +L       F 
Sbjct: 320 ILTVATLFGSIKLLKTLVLPSLYNGHAALLKSPFQAGIFTGSAFWVTVKYLTSVLPATFA 379

Query: 276 ITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQD--EKFRYIIELAERGTFEPL 333
             P++NFF + +F    G+  Y F +C   DPG I       E+   I  L ERG F+  
Sbjct: 380 SHPILNFFFASIF----GLAMYCFFRCMSMDPGYIPKLSGITEQKEVIETLIERGEFDTR 435

Query: 334 SFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFV 393
            FC    VRKP+RSK C    R VA+FDH CPWV N IG +NH+ FV Y+  L       
Sbjct: 436 HFCFVTYVRKPLRSKFCRQSKRVVARFDHFCPWVWNAIGVRNHRMFVLYVLFLQIGIPLW 495

Query: 394 LYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQ 453
           L   + Y+    + +     E   V+W  LQ                IWIT L   Q++Q
Sbjct: 496 LALNSAYFGELLEIKRWDPLEFYLVIWISLQL---------------IWITFLSFVQIFQ 540

Query: 454 IISLGMTTNERMNANRYHHFIAN 476
           I    +TT+E +N  +Y +  A+
Sbjct: 541 ICR-SLTTSEAVNLQKYGYMGAD 562

Palmitoyltransferase specific for casein kinase 1.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q7S3M5|AKR1_NEUCR Palmitoyltransferase AKR1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=akr-1 PE=3 SV=2

 Score =  204 bits (518), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 150/497 (30%), Positives = 236/497 (47%), Gaps = 49/497 (9%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           K+ I +GA ++  GG+  ATPL WA ++ H  +V LL+QHGADP + DS+G   +H +  
Sbjct: 94  KFLIDKGAEINKKGGESVATPLQWAAQRCHYYTVHLLLQHGADPLITDSQGYNTLHISTF 153

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
            G+  ++  L+ +GI V+++D  G TALMWSAYK F      + + +GAS   +D+  G 
Sbjct: 154 NGNVLLIVLLLHQGIPVDVEDAYGHTALMWSAYKGFPAC-VDVFLRWGASVHAKDE-QGF 211

Query: 122 VALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEE-NIGAPWLGKATVDKITEL 180
            ALHWA+   +   I  L+ + +      A G TP +  +E N  A W  +  +D+    
Sbjct: 212 TALHWALVKGSPGCIQKLIEYGADRFAKTANGKTPAITAQELNTVAAW--QKALDECG-- 267

Query: 181 KDHYNTQQNII--------HRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLAL 232
              Y+   N I        +     ++   ++ F  PFVM         A +  MA + +
Sbjct: 268 ---YDEHGNAIVPSWPGASYLLQDRRSFMTKFTFLWPFVMV-------WATMVVMAGMPV 317

Query: 233 FISL-----------YIVMQVIGTVMFDERLFKILP--LPVYFATKFWIYITWLFWITPV 279
           F+ +           ++  QVI     D R  +  P    ++  + F   + WL  I   
Sbjct: 318 FVGIPLGVLAGYAVQWVAQQVIAYAPPDMRQLQKTPWMAGIFAGSLFLCIMNWLLHIFGS 377

Query: 280 VNF------FVSLLF-FSTSGVLWYNFIKCWKGDPGVIT--APQDEKFRYIIELAERGTF 330
             F        +LLF F  S  +W+ +I+C   DPG +       E+   I EL     F
Sbjct: 378 TMFGQDSAVIPNLLFAFFISMTIWF-YIRCMVDDPGFVPKMGGVAEQKAVIDELISLWKF 436

Query: 331 EPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMC 390
           +  +FC TC++R P+RSKHC  C RCVAK DHHCPWV NCIG  NH++F  Y+ +L    
Sbjct: 437 DESNFCVTCMIRTPLRSKHCRRCQRCVAKHDHHCPWVYNCIGVNNHRHFFFYLINLTLSV 496

Query: 391 CFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQ 450
               +   +Y  +  +        +   +  ++  D +     + A +   W+++LL  Q
Sbjct: 497 VTYDWLTYRYLSTLSETASDECNILAPSLCRIVNADTYSLLTAIWASLQLTWVSMLLFVQ 556

Query: 451 LYQIISLGMTTNERMNA 467
             Q+ S  MTT E M+ 
Sbjct: 557 FVQVSS-AMTTYENMHG 572

Palmitoyltransferase specific for casein kinase 1.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|P0CS66|AKR1_CRYNJ Palmitoyltransferase AKR1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=AKR1 PE=3 SV=1

 Score =  202 bits (515), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 157/513 (30%), Positives = 246/513 (47%), Gaps = 59/513 (11%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           +  I  GA +DAIGG+L+ATPL WA R GHL  V LLI  GADP + DS+G   +H    
Sbjct: 121 RLLIDSGADIDAIGGELKATPLQWAARNGHLYVVHLLISRGADPNIHDSQGFNTLHLITH 180

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
                 + Y++ + + ++ +D +G TALMW+AY+  +L    LLI  GAS    D   G 
Sbjct: 181 SSAVMPLLYMLHQPVAIDEKDTDGHTALMWAAYQGDALS-VDLLIRHGASVNSTDNA-GM 238

Query: 122 VALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKA------TVD 175
             LHWA    N V+I  LV   +SL+     G TP  + EE  G     K       ++D
Sbjct: 239 TPLHWAAVKGNKVSIMHLVEAGASLDAKEEAGKTPRDMAEELRGLVPFQKGLEEAGWSID 298

Query: 176 KITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMA---KLAL 232
            + +++     +  I+             +F LP  +  LI   F+    Y+     +A 
Sbjct: 299 GV-KMEGKLGPRNTIL------------AIFLLPIAVLWLIFSTFKWLPVYVGVPFAIAE 345

Query: 233 FISLY--IVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFS 290
           F+ +   +V+ ++G +   +++        YFA+     + W+ +       ++S    +
Sbjct: 346 FMGMQYTVVLVLLGHIKAQDKVST----SNYFASIITASLIWVGYC------WISRFAVN 395

Query: 291 TSGVLWYN------FIKC----WKG---DPG-VITAPQDEKFRYIIE-LAERGTFEPLSF 335
           T G  + N      F+ C    W     DPG V    QD + + ++E L + G     +F
Sbjct: 396 TPGYAFSNLGFIIMFVGCCWTFWTAIVTDPGFVPKGQQDAEIKEVLEDLVDAGRLNGTNF 455

Query: 336 CSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLL-FMCCFVL 394
           C  C+ RKP+RSKHC  CNRCVA+FDHHCPW+ NC+GAKNH+ F+ ++  L+  +  F+ 
Sbjct: 456 CIVCMARKPLRSKHCRTCNRCVARFDHHCPWIWNCVGAKNHRSFLLFVLFLIGGIILFIR 515

Query: 395 YGIAKYWKSKCQFQLSHEREVMF--VVWDMLQCDGWVGFILLNAF---VHAIWITVLLSC 449
             IA   ++  ++  +    +    +   + Q   +  F+L  A    +   W +VL   
Sbjct: 516 LTIAYIQQNAPEYIPTPNPGLTTCDISTTLCQAGDFDPFLLCMALWSTLQLTWTSVLAIS 575

Query: 450 QLYQIISLGMTTNERMNANRYHHFIANPQGQFI 482
            L+Q +S  MTT E  N  RY  F+    GQ +
Sbjct: 576 HLWQ-VSRQMTTFEVSNLGRY-GFMGGRGGQSL 606

Palmitoyltransferase specific for casein kinase 1.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|P0CS67|AKR1_CRYNB Palmitoyltransferase AKR1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=AKR1 PE=3 SV=1

 Score =  202 bits (515), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 157/513 (30%), Positives = 246/513 (47%), Gaps = 59/513 (11%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           +  I  GA +DAIGG+L+ATPL WA R GHL  V LLI  GADP + DS+G   +H    
Sbjct: 121 RLLIDSGADIDAIGGELKATPLQWAARNGHLYVVHLLISRGADPNIHDSQGFNTLHLITH 180

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
                 + Y++ + + ++ +D +G TALMW+AY+  +L    LLI  GAS    D   G 
Sbjct: 181 SSAVMPLLYMLHQPVAIDEKDTDGHTALMWAAYQGDALS-VDLLIRHGASVNSTDNA-GM 238

Query: 122 VALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKA------TVD 175
             LHWA    N V+I  LV   +SL+     G TP  + EE  G     K       ++D
Sbjct: 239 TPLHWAAVKGNKVSIMHLVEAGASLDAKEEAGKTPRDMAEELRGLVPFQKGLEEAGWSID 298

Query: 176 KITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMA---KLAL 232
            + +++     +  I+             +F LP  +  LI   F+    Y+     +A 
Sbjct: 299 GV-KMEGKLGPRNTIL------------AIFLLPIAVLWLIFSTFKWLPVYVGVPFAIAE 345

Query: 233 FISLY--IVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFS 290
           F+ +   +V+ ++G +   +++        YFA+     + W+ +       ++S    +
Sbjct: 346 FMGMQYTVVLVLLGHIKAQDKVST----SNYFASIITASLIWVGYC------WISRFAVN 395

Query: 291 TSGVLWYN------FIKC----WKG---DPG-VITAPQDEKFRYIIE-LAERGTFEPLSF 335
           T G  + N      F+ C    W     DPG V    QD + + ++E L + G     +F
Sbjct: 396 TPGYAFSNLGFIIMFVGCCWTFWTAIVTDPGFVPKGQQDAEIKEVLEDLVDAGRLNGTNF 455

Query: 336 CSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLL-FMCCFVL 394
           C  C+ RKP+RSKHC  CNRCVA+FDHHCPW+ NC+GAKNH+ F+ ++  L+  +  F+ 
Sbjct: 456 CIVCMARKPLRSKHCRTCNRCVARFDHHCPWIWNCVGAKNHRSFLLFVLFLIGGIILFIR 515

Query: 395 YGIAKYWKSKCQFQLSHEREVMF--VVWDMLQCDGWVGFILLNAF---VHAIWITVLLSC 449
             IA   ++  ++  +    +    +   + Q   +  F+L  A    +   W +VL   
Sbjct: 516 LTIAYIQQNAPEYIPTPNPGLTTCDISTTLCQAGDFDPFLLCMALWSTLQLTWTSVLAIS 575

Query: 450 QLYQIISLGMTTNERMNANRYHHFIANPQGQFI 482
            L+Q +S  MTT E  N  RY  F+    GQ +
Sbjct: 576 HLWQ-VSRQMTTFEVSNLGRY-GFMGGRGGQSL 606

Palmitoyltransferase specific for casein kinase 1.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	923
242021104	635	zinc finger protein DHHC domain containi	0.556	0.809	0.549	1e-169
118793277	621	AGAP011732-PA [Anopheles gambiae str. PE	0.565	0.840	0.511	1e-163
380020050	609	PREDICTED: LOW QUALITY PROTEIN: palmitoy	0.562	0.852	0.515	1e-160
328791445	609	PREDICTED: palmitoyltransferase ZDHHC17	0.546	0.827	0.529	1e-160
383855830	609	PREDICTED: palmitoyltransferase ZDHHC17-	0.546	0.827	0.528	1e-160
442632645	655	Huntingtin-interacting protein 14, isofo	0.553	0.780	0.513	1e-159
21357959	637	Huntingtin-interacting protein 14, isofo	0.553	0.802	0.513	1e-159
195590611	637	GD14587 [Drosophila simulans] gi|1941970	0.553	0.802	0.513	1e-159
195477856	637	GE22881 [Drosophila yakuba] gi|194186207	0.553	0.802	0.511	1e-159
194873194	637	GG15942 [Drosophila erecta] gi|190654941	0.553	0.802	0.511	1e-159

>gi|242021104|ref|XP_002430986.1| zinc finger protein DHHC domain containing protein, putative [Pediculus humanus corporis] gi|212516210|gb|EEB18248.1| zinc finger protein DHHC domain containing protein, putative [Pediculus humanus corporis]

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 285/519 (54%), Positives = 359/519 (69%), Gaps = 5/519 (0%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +KYF+  GA+VDAIGG LQ+TPLHWATRQG+L SV LL++ GADP+L D EG +C+H AA
Sbjct: 101 IKYFVELGAVVDAIGGVLQSTPLHWATRQGYLQSVTLLMKFGADPSLKDGEGCSCLHLAA 160

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
           QFGHT IVAYLVAKG++ NLQD+ GMT LMWS+YKV SLDPTRLL+T GA +  QDK +G
Sbjct: 161 QFGHTAIVAYLVAKGLSPNLQDKYGMTPLMWSSYKVSSLDPTRLLLTLGACSGAQDKFYG 220

Query: 121 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL 180
           N ALHWAI AKNHVA+  LV   + L IPN QG TPF ++ ++    W+GK  ++KI E 
Sbjct: 221 NTALHWAIKAKNHVAVNILVMSGADLHIPNNQGFTPFSMISKDKTPNWVGKKVLEKIQE- 279

Query: 181 KDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVM 240
                + +  + R  + K  R   M A PF+ F ++G + Q+   Y+ KL L +  YI +
Sbjct: 280 --DVPSSEFFLKRLIRDKRLRYWCMLATPFIGFYIVGLVMQSNQDYLVKLGLILVFYIFI 337

Query: 241 QVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFI 300
              G V FD+RL  +LP+ +Y ATKFW+YITW  +I P  +  +S++F S S +LW+ FI
Sbjct: 338 YFAGKVFFDDRLTTVLPMSLYLATKFWMYITWCLYIAPKCSILLSVIFISFSLLLWFYFI 397

Query: 301 KCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKF 360
           K WKGDPGVIT  Q+EKFR IIELAE   FE   FCSTCLVR+PIRSKHC++CNRCVAKF
Sbjct: 398 KSWKGDPGVITYTQEEKFRTIIELAENDGFERQWFCSTCLVRRPIRSKHCAMCNRCVAKF 457

Query: 361 DHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVW 420
           DHHCPWVGNCIGAKNHKYF+GY+  LL MC  V++G   YW + C+     E      V 
Sbjct: 458 DHHCPWVGNCIGAKNHKYFIGYLCMLLVMCVLVIHGATVYWNAVCKITPISE-SFWTAVG 516

Query: 421 DMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHF-IANPQG 479
           D L C+GWV ++ +NA +H++W+  LL CQ+YQI  LGMTTNERMN  RY HF   N   
Sbjct: 517 DCLSCEGWVSWVAVNALLHSVWVASLLCCQMYQISCLGMTTNERMNVGRYKHFHTVNDVK 576

Query: 480 QFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEV 518
              SPF  G  QN +D  G  CFGLF P+  DWM +Y++
Sbjct: 577 STKSPFDHGPCQNIIDLLGIRCFGLFNPDYTDWMTQYQL 615

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118793277|ref|XP_320777.3| AGAP011732-PA [Anopheles gambiae str. PEST] gi|116117300|gb|EAA00049.3| AGAP011732-PA [Anopheles gambiae str. PEST]

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 278/543 (51%), Positives = 373/543 (68%), Gaps = 21/543 (3%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +KYF+ +GAIVDA+GG+L ATPLHWATRQGHL +VVLL+  GADP+L D+EG +CIH AA
Sbjct: 89  IKYFLDKGAIVDAVGGELNATPLHWATRQGHLGAVVLLLAAGADPSLRDAEGCSCIHLAA 148

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
           QFGHT +VAY +A+G+N +LQDR GMTALMW+A+K+ +LDP RLL+T GA+ ++ D  HG
Sbjct: 149 QFGHTALVAYFIARGVNPDLQDRGGMTALMWAAWKISALDPVRLLLTLGANPSLADHTHG 208

Query: 121 NVALHWAIYAKNHVAITTLV-SHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE 179
           N ALHWAI A+N  AI+TLV    +++E+PN +G TP  +L+ ++G+ W+G    D+I E
Sbjct: 209 NTALHWAILARNATAISTLVLKGKANMEVPNLRGDTPLTMLQPHLGSIWIGTKVSDRIRE 268

Query: 180 LKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIV 239
                + ++N + R +  K  R   M A PF++F L+G +F A    + K+ L   LY V
Sbjct: 269 ATQQSH-RRNPLVRMTLDKRFRWWSMIATPFLVFYLVGLVFCADTQIIIKIFLLACLYSV 327

Query: 240 MQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNF 299
              IG  +FDE L  +LPL VY ATK W Y+TWL +I P V+F  SL F + S  LW  F
Sbjct: 328 AYTIGQHLFDENLMALLPLSVYMATKLWFYVTWLTYIAPTVSFLASLAFLACSAGLWVCF 387

Query: 300 IKCWKGDPGVITAPQDEKFRYIIELAERGT--FEPLSFCSTCLVRKPIRSKHCSICNRCV 357
           +K W+G+PGVI   Q+++FR IIEL+ERG   FEP +FCS CLVR+P+RSKHCS+C+RCV
Sbjct: 388 LKSWRGNPGVIQPTQEQRFRTIIELSERGASGFEPSAFCSACLVRRPVRSKHCSVCDRCV 447

Query: 358 AKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMF 417
           A+FDHHCPWVGNCIGAKNHKYF+G++  LL MC ++LYG + ++   C   +        
Sbjct: 448 ARFDHHCPWVGNCIGAKNHKYFMGFLWMLLIMCGWMLYGGSNFYVQTCSINMDEG----- 502

Query: 418 VVWDMLQ----CDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHF 473
            +W  LQ    C+ WVG+++ NA +H  W+TVL  CQ YQ++ LGMTTNER+N  RY HF
Sbjct: 503 -LWSALQAIGSCNPWVGWVMGNALLHMSWVTVLTICQSYQVVCLGMTTNERLNRGRYRHF 561

Query: 474 IANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYE----VYTEPTSLSDKY 529
            A       SPF+RG ++N  DF   SCFGL +P+R DWM+ +E    V  EP    D +
Sbjct: 562 QAKGGK---SPFNRGPVKNLFDFLECSCFGLVQPQRTDWMQFFEFDKHVEHEPLLRPDNF 618

Query: 530 QFV 532
           Q+V
Sbjct: 619 QYV 621

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020050|ref|XP_003693911.1| PREDICTED: LOW QUALITY PROTEIN: palmitoyltransferase ZDHHC17-like [Apis florea]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 277/537 (51%), Positives = 363/537 (67%), Gaps = 18/537 (3%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +KY I++GAIVDAIGG+L +TPLHWATRQGHL +VV+L++ GADPTL DSEG +CIH AA
Sbjct: 86  VKYLIAKGAIVDAIGGELASTPLHWATRQGHLSTVVILMRAGADPTLRDSEGFSCIHLAA 145

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
           QFGHT IVAYLVAKG+N N+ DR+ MT LMWSAYKV SLDPTRLL+T GAS ++ D +HG
Sbjct: 146 QFGHTSIVAYLVAKGVNPNMPDRSAMTPLMWSAYKVNSLDPTRLLLTLGASHSLADNLHG 205

Query: 121 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL 180
           N ALHWAI A+N  AI+TLV H +SL++PN +  TP  LL  +IGA WLG     +I E 
Sbjct: 206 NTALHWAIIAENSTAISTLVHHGASLDVPNIRDETPMTLLGRHIGAAWLGHKLSQEIRE- 264

Query: 181 KDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVM 240
                 +Q     + + K  R   M + PF++F +IG IFQ+ + Y+ KL  F++L+I +
Sbjct: 265 ------KQGRTRTWCRDKRMRWYCMVSTPFIVFYVIGMIFQSGLHYLVKLGAFVTLHIAL 318

Query: 241 QVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFI 300
            +    +FDERLF I+P+ +Y ATK WIY+TW+FW+     +++ LL  S S  LW  F+
Sbjct: 319 YLANHFIFDERLFHIIPMSIYLATKMWIYVTWIFWLGIHAAWYLWLLLVSGSVPLWICFL 378

Query: 301 KCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKF 360
           + W+GDPGVITA  ++K   IIELAE G FEP SFCS+CLVR+P+RSKHCS C+RCVA+F
Sbjct: 379 QSWRGDPGVITATHEDKLNTIIELAESGGFEPQSFCSSCLVRRPMRSKHCSTCDRCVARF 438

Query: 361 DHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVW 420
           DHHCPW+ NCIGA NHKYF+G+++SLL +C  VL    +YW+ +C   L++       + 
Sbjct: 439 DHHCPWINNCIGAHNHKYFLGFLASLLGLCIVVLSASVQYWQFECWTNLTNGHSADNYLV 498

Query: 421 DMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQ 480
               CD WV ++  N  +H  W+  LL+CQ YQI+ LGMTTNERMNA RY HF    QG 
Sbjct: 499 AAATCDAWVMWVAANTCLHFFWVGTLLACQCYQIMVLGMTTNERMNAGRYAHF---KQG- 554

Query: 481 FISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSL-----SDKYQFV 532
             +PFHRG LQN  DF   S  G+      DW+  ++       L      D +Q++
Sbjct: 555 --NPFHRGALQNAADFCNLSFCGVKAKPSSDWLHSFDXQQSIEKLPLLATKDNFQYI 609

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791445|ref|XP_394622.2| PREDICTED: palmitoyltransferase ZDHHC17 isoform 1 [Apis mellifera]

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 274/517 (52%), Positives = 357/517 (69%), Gaps = 13/517 (2%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +KY I++GAIVDAIGG+L +TPLHWATRQGHL +VV+L++ GADPTL DSEG +CIH AA
Sbjct: 86  VKYLIAKGAIVDAIGGELASTPLHWATRQGHLSTVVILMRAGADPTLRDSEGFSCIHLAA 145

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
           QFGHT IVAYLVAKG+N N+ DR+ MT LMWSAYKV SLDPTRLL+T GAS ++ D +HG
Sbjct: 146 QFGHTSIVAYLVAKGVNPNMPDRSAMTPLMWSAYKVNSLDPTRLLLTLGASHSLADNLHG 205

Query: 121 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL 180
           N ALHWAI A+N  AI+TLV H +SL++PN +  TP  LL  +IGA WLG     +I E 
Sbjct: 206 NTALHWAIIAENSTAISTLVHHGASLDVPNIRDETPMTLLGRHIGAAWLGHKLSQEIRE- 264

Query: 181 KDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVM 240
                 +Q     + + K  R   M + PF++F +IG IFQ+ + Y+ KL  F++L+I +
Sbjct: 265 ------KQGRTRTWCRDKRMRWYCMVSTPFIVFYVIGMIFQSGLHYLVKLGAFVTLHIAL 318

Query: 241 QVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFI 300
            +    +FDERLF I+P+ +Y ATK WIY+TW+FW+     +++ LL  S S  LW  F+
Sbjct: 319 YLANHFIFDERLFHIIPMSIYLATKMWIYVTWIFWLGIHAAWYLWLLLVSGSVPLWICFL 378

Query: 301 KCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKF 360
           + W+GDPGVITA  ++K   IIELAE G FEP SFCS+CLVR+P+RSKHCS C+RCVA+F
Sbjct: 379 QSWRGDPGVITATHEDKLNTIIELAESGGFEPQSFCSSCLVRRPMRSKHCSTCDRCVARF 438

Query: 361 DHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVW 420
           DHHCPW+ NCIGA NHKYF+G+++SLL +C  VL    +YW+ +C   L++       + 
Sbjct: 439 DHHCPWINNCIGAHNHKYFLGFLASLLGLCIVVLSASVQYWQFECWTNLTNGHSADNYLV 498

Query: 421 DMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQ 480
               CD WV ++  N  +H  W+  LL+CQ YQI+ LGMTTNERMNA RY HF    QG 
Sbjct: 499 AAATCDAWVMWVAANTCLHFFWVGTLLACQCYQIMVLGMTTNERMNAGRYAHF---KQG- 554

Query: 481 FISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYE 517
             +PFHRG LQN  DF   S  G+      DW+  ++
Sbjct: 555 --NPFHRGALQNAADFCNLSFCGVKAKPSSDWLHSFD 589

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855830|ref|XP_003703413.1| PREDICTED: palmitoyltransferase ZDHHC17-like [Megachile rotundata]

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 273/517 (52%), Positives = 357/517 (69%), Gaps = 13/517 (2%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +KY I++GA+VDAIGG+L +TPLHWATRQGHL +VV+L++ GADPTL DSEG +CIH AA
Sbjct: 86  VKYLIAKGAVVDAIGGELASTPLHWATRQGHLSTVVILMRAGADPTLRDSEGFSCIHLAA 145

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
           QFGHT IVAYLVAKG+N N+ DR+ MT LMWSAYKV SLDPTRLL+T GAS ++ D +HG
Sbjct: 146 QFGHTSIVAYLVAKGVNPNMPDRSAMTPLMWSAYKVNSLDPTRLLLTLGASHSLADNLHG 205

Query: 121 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL 180
           N ALHWAI A+N  AI+TLV H +SL++PN +  TP  LL  +IGA WLG     +I E 
Sbjct: 206 NTALHWAIIAENSTAISTLVHHGASLDVPNIRDETPMTLLGRHIGAAWLGHKISQEIRE- 264

Query: 181 KDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVM 240
                 +Q     + + K  R   M + PF++F +IG IFQ+ + Y+ KL  F++LYI +
Sbjct: 265 ------RQGRTRTWCRDKRIRWYCMVSTPFIVFYVIGMIFQSGLDYLVKLGAFVTLYIAL 318

Query: 241 QVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFI 300
            +    +FDERLF I+P+ +Y ATK WIY+TW+FW+     +++ LL    S  LW  F+
Sbjct: 319 YLANHFVFDERLFHIIPMSIYLATKMWIYVTWIFWLGVHAAWYLWLLLVGGSVPLWVCFL 378

Query: 301 KCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKF 360
           + W+GDPGVITA  ++K   IIELAE G FEP SFCS+CLVR+P+RSKHCS C+RCVA+F
Sbjct: 379 QSWRGDPGVITATHEDKLNTIIELAESGGFEPQSFCSSCLVRRPMRSKHCSTCDRCVARF 438

Query: 361 DHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVW 420
           DHHCPWV NCIGA NHKYF+G+++SLL +C  VL    +YW+ +C   L++       + 
Sbjct: 439 DHHCPWVNNCIGAHNHKYFLGFLASLLGLCIVVLSASVQYWQFECWTNLTNGHSADNYLV 498

Query: 421 DMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQ 480
               CD WV ++  N  +H  W+  LL+CQ YQI+ LGMTTNERMNA RY HF    QG 
Sbjct: 499 AAATCDAWVMWVTANTSLHFFWVGTLLACQCYQIMVLGMTTNERMNAGRYSHF---KQG- 554

Query: 481 FISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYE 517
             +PFHRG +QN  DF   S  G+      DW++ ++
Sbjct: 555 --NPFHRGAIQNAADFCNISFCGIKAKPSSDWLQSFD 589

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442632645|ref|NP_001261910.1| Huntingtin-interacting protein 14, isoform B [Drosophila melanogaster] gi|440215856|gb|AGB94603.1| Huntingtin-interacting protein 14, isoform B [Drosophila melanogaster]

 Score =  569 bits (1467), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 267/520 (51%), Positives = 354/520 (68%), Gaps = 9/520 (1%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           ++YF+ +GA VDA+GG+L ATPLHWATRQGHL +VVLL+  GADP + D+EG +CIH AA
Sbjct: 94  IRYFLEKGATVDAVGGELNATPLHWATRQGHLGAVVLLMAAGADPRIRDAEGCSCIHIAA 153

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
           QF HT +VAY +AKG++ +LQDR GMTALMW+A+KV +LDP RLL+T GA+  + D  HG
Sbjct: 154 QFAHTALVAYFIAKGVDPDLQDRGGMTALMWAAWKVCALDPVRLLLTLGANPAMVDYTHG 213

Query: 121 NVALHWAIYAKNHVAITTLV-SHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE 179
           N ALHWAI A+N  AI+TLV    +SL++PN +G TP  +LE   GA W+G   +D++ E
Sbjct: 214 NTALHWAILARNATAISTLVLKSKASLDVPNLRGETPLSMLESQTGAIWIGAKVMDRVKE 273

Query: 180 LKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIV 239
                  +++++ +    K  R   M A PF  F L G +F     Y+ K  L   LY +
Sbjct: 274 AALTSQQRRSLLSKLRHDKRLRWWSMVACPFTAFYLAGIVFTVNTLYIIKFFLLGCLYSI 333

Query: 240 MQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNF 299
              IG  +FDE L  +LPL VY ATK W Y+TWL +I   V+F  ++ F  +S +LW  F
Sbjct: 334 FHTIGKALFDEHLMALLPLSVYLATKAWFYVTWLMYIDDAVSFTATVCFLISSLLLWVCF 393

Query: 300 IKCWKGDPGVITAPQDEKFRYIIELAERG--TFEPLSFCSTCLVRKPIRSKHCSICNRCV 357
           +K WKGDPG+I   ++++F+ IIEL+ERG   FEP SFCS CLVR+PIRSKHCS+C+RCV
Sbjct: 394 LKSWKGDPGIIRPTREQRFKTIIELSERGGIGFEPASFCSGCLVRRPIRSKHCSVCDRCV 453

Query: 358 AKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMF 417
           A+FDHHCPWVGNCIG KNH YF+G++  LL MC ++LYG +KY+ ++C  +       M 
Sbjct: 454 ARFDHHCPWVGNCIGLKNHSYFMGFLWMLLIMCAWMLYGGSKYYVNQCNVRFDDFLGAMR 513

Query: 418 VVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANP 477
            + +   CD WVG+++ NA +H  W+ +L  CQ YQ+I LGMTTNERMN  RY HF A  
Sbjct: 514 AIGN---CDAWVGWVMGNALLHMSWVILLTICQTYQVICLGMTTNERMNRGRYRHFQAKG 570

Query: 478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYE 517
                SPF RG +QN VDF   SCFGL +P+R+DWM  Y+
Sbjct: 571 GH---SPFTRGPIQNLVDFLECSCFGLVQPKRVDWMNYYD 607

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21357959|ref|NP_648824.1| Huntingtin-interacting protein 14, isoform A [Drosophila melanogaster] gi|442632647|ref|NP_001261911.1| Huntingtin-interacting protein 14, isoform C [Drosophila melanogaster] gi|7294202|gb|AAF49554.1| Huntingtin-interacting protein 14, isoform A [Drosophila melanogaster] gi|20151545|gb|AAM11132.1| LD10758p [Drosophila melanogaster] gi|220943582|gb|ACL84334.1| Hip14-PA [synthetic construct] gi|440215857|gb|AGB94604.1| Huntingtin-interacting protein 14, isoform C [Drosophila melanogaster]

 Score =  569 bits (1467), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 267/520 (51%), Positives = 354/520 (68%), Gaps = 9/520 (1%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           ++YF+ +GA VDA+GG+L ATPLHWATRQGHL +VVLL+  GADP + D+EG +CIH AA
Sbjct: 94  IRYFLEKGATVDAVGGELNATPLHWATRQGHLGAVVLLMAAGADPRIRDAEGCSCIHIAA 153

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
           QF HT +VAY +AKG++ +LQDR GMTALMW+A+KV +LDP RLL+T GA+  + D  HG
Sbjct: 154 QFAHTALVAYFIAKGVDPDLQDRGGMTALMWAAWKVCALDPVRLLLTLGANPAMVDYTHG 213

Query: 121 NVALHWAIYAKNHVAITTLV-SHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE 179
           N ALHWAI A+N  AI+TLV    +SL++PN +G TP  +LE   GA W+G   +D++ E
Sbjct: 214 NTALHWAILARNATAISTLVLKSKASLDVPNLRGETPLSMLESQTGAIWIGAKVMDRVKE 273

Query: 180 LKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIV 239
                  +++++ +    K  R   M A PF  F L G +F     Y+ K  L   LY +
Sbjct: 274 AALTSQQRRSLLSKLRHDKRLRWWSMVACPFTAFYLAGIVFTVNTLYIIKFFLLGCLYSI 333

Query: 240 MQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNF 299
              IG  +FDE L  +LPL VY ATK W Y+TWL +I   V+F  ++ F  +S +LW  F
Sbjct: 334 FHTIGKALFDEHLMALLPLSVYLATKAWFYVTWLMYIDDAVSFTATVCFLISSLLLWVCF 393

Query: 300 IKCWKGDPGVITAPQDEKFRYIIELAERG--TFEPLSFCSTCLVRKPIRSKHCSICNRCV 357
           +K WKGDPG+I   ++++F+ IIEL+ERG   FEP SFCS CLVR+PIRSKHCS+C+RCV
Sbjct: 394 LKSWKGDPGIIRPTREQRFKTIIELSERGGIGFEPASFCSGCLVRRPIRSKHCSVCDRCV 453

Query: 358 AKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMF 417
           A+FDHHCPWVGNCIG KNH YF+G++  LL MC ++LYG +KY+ ++C  +       M 
Sbjct: 454 ARFDHHCPWVGNCIGLKNHSYFMGFLWMLLIMCAWMLYGGSKYYVNQCNVRFDDFLGAMR 513

Query: 418 VVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANP 477
            + +   CD WVG+++ NA +H  W+ +L  CQ YQ+I LGMTTNERMN  RY HF A  
Sbjct: 514 AIGN---CDAWVGWVMGNALLHMSWVILLTICQTYQVICLGMTTNERMNRGRYRHFQAKG 570

Query: 478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYE 517
                SPF RG +QN VDF   SCFGL +P+R+DWM  Y+
Sbjct: 571 GH---SPFTRGPIQNLVDFLECSCFGLVQPKRVDWMNYYD 607

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195590611|ref|XP_002085038.1| GD14587 [Drosophila simulans] gi|194197047|gb|EDX10623.1| GD14587 [Drosophila simulans]

 Score =  569 bits (1467), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 267/520 (51%), Positives = 354/520 (68%), Gaps = 9/520 (1%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           ++YF+ +GA VDA+GG+L ATPLHWATRQGHL +VVLL+  GADP + D+EG +CIH AA
Sbjct: 94  IRYFLEKGATVDAVGGELNATPLHWATRQGHLGAVVLLMAAGADPRIRDAEGCSCIHIAA 153

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
           QF HT +VAY +AKG++ +LQDR GMTALMW+A+KV +LDP RLL+T GA+  + D  HG
Sbjct: 154 QFAHTALVAYFIAKGVDPDLQDRGGMTALMWAAWKVCALDPVRLLLTLGANPAMVDYTHG 213

Query: 121 NVALHWAIYAKNHVAITTLV-SHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE 179
           N ALHWAI A+N  AI+TLV    +SL++PN +G TP  +LE   GA W+G   +D++ E
Sbjct: 214 NTALHWAILARNATAISTLVLKSKASLDVPNLRGETPLSMLESQTGAIWIGAKVMDRVKE 273

Query: 180 LKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIV 239
                  +++++ +    K  R   M A PF  F L G +F     Y+ K  L   LY +
Sbjct: 274 AALTSQQRRSLLSKLRHDKRLRWWSMVACPFTAFYLAGIVFTVNTLYIIKFFLLGCLYAI 333

Query: 240 MQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNF 299
              IG  +FDE L  +LPL VY ATK W Y+TWL +I   V+F  ++ F  +S +LW  F
Sbjct: 334 FHTIGKALFDEHLMALLPLSVYLATKAWFYVTWLMYIDDAVSFTATVCFLISSLLLWVCF 393

Query: 300 IKCWKGDPGVITAPQDEKFRYIIELAERG--TFEPLSFCSTCLVRKPIRSKHCSICNRCV 357
           +K WKGDPG+I   ++++F+ IIEL+ERG   FEP SFCS CLVR+PIRSKHCS+C+RCV
Sbjct: 394 LKSWKGDPGIIRPTREQRFKTIIELSERGGIGFEPASFCSGCLVRRPIRSKHCSVCDRCV 453

Query: 358 AKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMF 417
           A+FDHHCPWVGNCIG KNH YF+G++  LL MC ++LYG +KY+ ++C  +       M 
Sbjct: 454 ARFDHHCPWVGNCIGLKNHSYFMGFLWMLLIMCAWMLYGGSKYYVNQCNVRFDDFIGAMR 513

Query: 418 VVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANP 477
            + +   CD WVG+++ NA +H  W+ +L  CQ YQ+I LGMTTNERMN  RY HF A  
Sbjct: 514 AIGN---CDAWVGWVMGNALLHMSWVILLTICQTYQVICLGMTTNERMNRGRYRHFQAKG 570

Query: 478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYE 517
                SPF RG +QN VDF   SCFGL +P+R+DWM  Y+
Sbjct: 571 GH---SPFTRGPIQNLVDFLECSCFGLVQPKRVDWMNYYD 607

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195477856|ref|XP_002086417.1| GE22881 [Drosophila yakuba] gi|194186207|gb|EDW99818.1| GE22881 [Drosophila yakuba]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 266/520 (51%), Positives = 353/520 (67%), Gaps = 9/520 (1%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           ++YF+ +GA VDA+GG+L ATPLHWATRQGHL +VVLL+  GADP + D+EG +CIH AA
Sbjct: 94  IRYFLEKGATVDAVGGELNATPLHWATRQGHLGAVVLLMAAGADPRIRDAEGCSCIHIAA 153

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
           QF HT +VAY +AKG++ +LQDR GMTALMW+A+KV +LDP RLL+T GA+  + D  HG
Sbjct: 154 QFAHTALVAYFIAKGVDPDLQDRGGMTALMWAAWKVCALDPVRLLLTLGANPAMVDYTHG 213

Query: 121 NVALHWAIYAKNHVAITTLV-SHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE 179
           N ALHWAI A+N  AI+TLV    +SL++PN +G TP  +LE   GA W+G   +D++ E
Sbjct: 214 NTALHWAILARNATAISTLVLKSKASLDVPNLRGETPLSMLESQTGAIWIGAKVMDRVKE 273

Query: 180 LKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIV 239
                  +++++ +    K  R   M A PF  F L G +F     Y+ K  L   LY +
Sbjct: 274 AALTSQQRRSLLSKLRHDKRLRWWSMVACPFTAFYLAGIVFTVNTLYIIKFFLLGCLYAI 333

Query: 240 MQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNF 299
              IG  +FDE L  +LPL VY ATK W Y+TWL +I   V+   ++ F  +S +LW  F
Sbjct: 334 FHTIGKALFDEHLMALLPLSVYLATKAWFYVTWLMYIDDAVSLTATVCFLISSLLLWVCF 393

Query: 300 IKCWKGDPGVITAPQDEKFRYIIELAERG--TFEPLSFCSTCLVRKPIRSKHCSICNRCV 357
           +K WKGDPG+I   ++++F+ IIEL+ERG   FEP SFCS CLVR+PIRSKHCS+C+RCV
Sbjct: 394 LKSWKGDPGIIRPTREQRFKTIIELSERGGIGFEPASFCSGCLVRRPIRSKHCSVCDRCV 453

Query: 358 AKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMF 417
           A+FDHHCPWVGNCIG KNH YF+G++  LL MC ++LYG +KY+ ++C  +       M 
Sbjct: 454 ARFDHHCPWVGNCIGLKNHSYFMGFLWMLLIMCAWMLYGGSKYYVNQCNVRFDDFLGAMR 513

Query: 418 VVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANP 477
            + +   CD WVG+++ NA +H  W+ +L  CQ YQ+I LGMTTNERMN  RY HF A  
Sbjct: 514 AIGN---CDAWVGWVMGNAMLHMSWVILLTICQTYQVICLGMTTNERMNRGRYRHFQAKG 570

Query: 478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYE 517
                SPF RG +QN VDF   SCFGL +P+R+DWM  Y+
Sbjct: 571 GH---SPFTRGPIQNLVDFLECSCFGLVQPKRVDWMNYYD 607

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194873194|ref|XP_001973158.1| GG15942 [Drosophila erecta] gi|190654941|gb|EDV52184.1| GG15942 [Drosophila erecta]

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 266/520 (51%), Positives = 353/520 (67%), Gaps = 9/520 (1%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           ++YF+ +GA VDA+GG+L ATPLHWATRQGHL +VVLL+  GADP + D+EG +CIH AA
Sbjct: 94  IRYFLEKGATVDAVGGELNATPLHWATRQGHLGAVVLLMAAGADPRIRDAEGCSCIHIAA 153

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
           QF HT +VAY +AKG++ +LQDR GMTALMW+A+KV +LDP RLL+T GA+  + D  HG
Sbjct: 154 QFAHTALVAYFIAKGVDPDLQDRGGMTALMWAAWKVCALDPVRLLLTLGANPAMVDYTHG 213

Query: 121 NVALHWAIYAKNHVAITTLV-SHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE 179
           N ALHWAI A+N  AI+TLV    +SL++PN +G TP  +LE   GA W+G   +D++ E
Sbjct: 214 NTALHWAILARNATAISTLVLKSKASLDVPNLRGETPLTMLESQTGAIWIGAKVMDRVKE 273

Query: 180 LKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIV 239
                  +++++ +    K  R   M A PF  F L G +F     Y+ K  L   LY +
Sbjct: 274 AALTSQQRRSLLSKLRHDKRLRWWSMVACPFTAFYLAGIVFTVNTLYIIKFFLLGCLYAI 333

Query: 240 MQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNF 299
              IG  +FDE L  +LPL VY ATK W Y+TWL +I   V+   ++ F  +S +LW  F
Sbjct: 334 FHTIGKALFDEHLMALLPLSVYLATKAWFYVTWLMYIDDAVSITATICFLISSLLLWVCF 393

Query: 300 IKCWKGDPGVITAPQDEKFRYIIELAERG--TFEPLSFCSTCLVRKPIRSKHCSICNRCV 357
           +K WKGDPG+I   ++++F+ IIEL+ERG   FEP SFCS CLVR+PIRSKHCS+C+RCV
Sbjct: 394 LKSWKGDPGIIRPTREQRFKTIIELSERGGIGFEPASFCSGCLVRRPIRSKHCSVCDRCV 453

Query: 358 AKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMF 417
           A+FDHHCPWVGNCIG KNH YF+G++  LL MC ++LYG +KY+ ++C  +       M 
Sbjct: 454 ARFDHHCPWVGNCIGLKNHSYFMGFLWMLLIMCAWMLYGGSKYYVNQCNVRFDDFLGAMR 513

Query: 418 VVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANP 477
            + +   CD WVG+++ NA +H  W+ +L  CQ YQ+I LGMTTNERMN  RY HF A  
Sbjct: 514 AIGN---CDAWVGWVMGNAMLHMSWVILLTICQTYQVICLGMTTNERMNRGRYRHFQAKG 570

Query: 478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYE 517
                SPF RG +QN VDF   SCFGL +P+R+DWM  Y+
Sbjct: 571 GH---SPFTRGPIQNLVDFLECSCFGLVQPKRVDWMNYYD 607

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	923
FB|FBgn0259824	637	Hip14 "Huntingtin-interacting	0.553	0.802	0.505	3.5e-146
UNIPROTKB|F1N9E7	601	ZDHHC17 "Uncharacterized prote	0.566	0.870	0.445	3.8e-133
ZFIN|ZDB-GENE-070424-194	620	zdhhc17 "zinc finger, DHHC-typ	0.565	0.841	0.448	1e-132
MGI|MGI:2445110	632	Zdhhc17 "zinc finger, DHHC dom	0.568	0.830	0.445	3.4e-132
UNIPROTKB|E9PTT0	622	Zdhhc17 "Protein Zdhhc17" [Rat	0.568	0.844	0.443	4.4e-132
UNIPROTKB|Q8IUH5	632	ZDHHC17 "Palmitoyltransferase	0.568	0.830	0.443	1.2e-131
UNIPROTKB|E1BJK1	634	ZDHHC17 "Uncharacterized prote	0.568	0.828	0.442	3.1e-131
RGD|1595790	622	Zdhhc17 "zinc finger, DHHC-typ	0.568	0.844	0.441	3.9e-131
UNIPROTKB|F1PRB8	604	ZDHHC17 "Uncharacterized prote	0.568	0.869	0.442	3.9e-131
UNIPROTKB|J9P6L2	494	ZDHHC17 "Uncharacterized prote	0.531	0.993	0.424	2.1e-116

FB|FBgn0259824 Hip14 "Huntingtin-interacting protein 14" [Drosophila melanogaster (taxid:7227)]

 Score = 1428 (507.7 bits), Expect = 3.5e-146, P = 3.5e-146
 Identities = 263/520 (50%), Positives = 346/520 (66%)

Query:     1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
             ++YF+ +GA VDA+GG+L ATPLHWATRQGHL +VVLL+  GADP + D+EG +CIH AA
Sbjct:    94 IRYFLEKGATVDAVGGELNATPLHWATRQGHLGAVVLLMAAGADPRIRDAEGCSCIHIAA 153

Query:    61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
             QF HT +VAY +AKG++ +LQDR GMTALMW+A+KV +LDP RLL+T GA+  + D  HG
Sbjct:   154 QFAHTALVAYFIAKGVDPDLQDRGGMTALMWAAWKVCALDPVRLLLTLGANPAMVDYTHG 213

Query:   121 NVALHWAIYAKNHVAITTLVSHT-SSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE 179
             N ALHWAI A+N  AI+TLV  + +SL++PN +G TP  +LE   GA W+G   +D++ E
Sbjct:   214 NTALHWAILARNATAISTLVLKSKASLDVPNLRGETPLSMLESQTGAIWIGAKVMDRVKE 273

Query:   180 LKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIV 239
                    +++++ +    K  R   M A PF  F L G +F     Y+ K  L   LY +
Sbjct:   274 AALTSQQRRSLLSKLRHDKRLRWWSMVACPFTAFYLAGIVFTVNTLYIIKFFLLGCLYSI 333

Query:   240 MQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPXXXXXXXXXXXXXXXXXWYNF 299
                IG  +FDE L  +LPL VY ATK W Y+TWL +I                   W  F
Sbjct:   334 FHTIGKALFDEHLMALLPLSVYLATKAWFYVTWLMYIDDAVSFTATVCFLISSLLLWVCF 393

Query:   300 IKCWKGDPGVITAPQDEKFRYIIELAERGT--FEPLSFCSTCLVRKPIRSKHCSICNRCV 357
             +K WKGDPG+I   ++++F+ IIEL+ERG   FEP SFCS CLVR+PIRSKHCS+C+RCV
Sbjct:   394 LKSWKGDPGIIRPTREQRFKTIIELSERGGIGFEPASFCSGCLVRRPIRSKHCSVCDRCV 453

Query:   358 AKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMF 417
             A+FDHHCPWVGNCIG KNH YF+G++  LL MC ++LYG +KY+ ++C  +       M 
Sbjct:   454 ARFDHHCPWVGNCIGLKNHSYFMGFLWMLLIMCAWMLYGGSKYYVNQCNVRFDDFLGAMR 513

Query:   418 VVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANP 477
              + +   CD WVG+++ NA +H  W+ +L  CQ YQ+I LGMTTNERMN  RY HF A  
Sbjct:   514 AIGN---CDAWVGWVMGNALLHMSWVILLTICQTYQVICLGMTTNERMNRGRYRHFQAKG 570

Query:   478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYE 517
              G   SPF RG +QN VDF   SCFGL +P+R+DWM  Y+
Sbjct:   571 -GH--SPFTRGPIQNLVDFLECSCFGLVQPKRVDWMNYYD 607

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=IMP

GO:0007268 "synaptic transmission" evidence=IMP

GO:0045202 "synapse" evidence=IDA

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0018345 "protein palmitoylation" evidence=ISS

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=ISS

GO:0050714 "positive regulation of protein secretion" evidence=IMP

UNIPROTKB|F1N9E7 ZDHHC17 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1305 (464.4 bits), Expect = 3.8e-133, P = 3.8e-133
 Identities = 239/536 (44%), Positives = 344/536 (64%)

Query:     1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
             +KY+IS+GAIVD +GGDL +TPLHWATRQGHL  VV L+++GADP+L+D EG +CIH AA
Sbjct:    75 VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA 134

Query:    61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
             QFGHT IVAYL+AKG +V++ D+NGMT LMW+AY+  S+DPTRLL+TF  S  + DK H 
Sbjct:   135 QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK 194

Query:   121 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL 180
             N ALHWA+ A N   I+ L+   ++++  N +G +P  L ++     W+    ++ + E 
Sbjct:   195 NTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESPLDLAKQRKNV-WM----INHLQEA 249

Query:   181 KDH--YNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQI-AYMAKLALFISLY 237
             +    Y++  + + +    K  R + M   PF++  L+GFI    I +++ K  ++  ++
Sbjct:   250 RQAKGYDSP-SFLRKLKADKEFRQKVMLGTPFLVIWLVGFIADLDIDSWLIKGLMYGGVW 308

Query:   238 IVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWI-TPXXXXXXXXXXXXXXXXXW 296
              ++Q +    FD  +   LPL +Y ATKFW+Y+TW FW                     +
Sbjct:   309 AMVQFLSKSFFDHSMHSALPLGIYLATKFWMYVTWFFWFWNDILFCVHHLPFLANSIALF 368

Query:   297 YNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRC 356
             YNF K WK DPG+I A +++K + I+ELAE G+ +   FCSTCL+RKP+RSKHC +CNRC
Sbjct:   369 YNFGKSWKSDPGIIKATEEQKKKTIVELAETGSLDLSIFCSTCLIRKPVRSKHCGVCNRC 428

Query:   357 VAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVM 416
             +AKFDHHCPWVGNC+GA NH+YF+GY+  LLFM C+++YG   YW   C+   + +    
Sbjct:   429 IAKFDHHCPWVGNCVGAGNHRYFMGYLFFLLFMICWMIYGCISYWGFHCETSYAKDGFWT 488

Query:   417 FVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIAN 476
             ++   +  C  W+ ++ LN+  H +W+ VLL CQ+YQI  LG+TTNERMNA RY HF   
Sbjct:   489 YIT-QIATCSPWMFWMFLNSVFHFMWVAVLLMCQMYQISCLGITTNERMNARRYKHFKVT 547

Query:   477 PQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFV 532
                   SPF+ G ++N +DF  + C GLF+P  +DW ++Y +  + TS S  YQ V
Sbjct:   548 TTS-IESPFNHGCIRNIIDFFEFRCCGLFRPVIVDWTRQYTIEYDQTSGSG-YQLV 601

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IEA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=IEA

GO:0030660 "Golgi-associated vesicle membrane" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

ZFIN|ZDB-GENE-070424-194 zdhhc17 "zinc finger, DHHC-type containing 17" [Danio rerio (taxid:7955)]

 Score = 1301 (463.0 bits), Expect = 1.0e-132, P = 1.0e-132
 Identities = 241/537 (44%), Positives = 345/537 (64%)

Query:     1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
             +KY+IS+GAIVD +GGDL +TPLHWATRQGHL  VV L+++GADP+L+D EG +C+H AA
Sbjct:    94 VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCVHLAA 153

Query:    61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
             QFGHT IVAYL+AKG +V++ D+NGMT LMW+AY+  S+DPTRLL+TF  S  + DK H 
Sbjct:   154 QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK 213

Query:   121 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL 180
             N ALHWA+ A N   I+ L+   ++++  N +G TP  L ++     W+    ++ + E 
Sbjct:   214 NTALHWAVLAGNTTVISLLLEANANVDAQNIKGETPLDLAKQRKNV-WM----INHLQEA 268

Query:   181 KDH--YNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQI-AYMAKLALFISLY 237
             +    Y++  + + R    K  R + M   PF++  L+GFI    I +++ K  ++  ++
Sbjct:   269 RQAKGYDSP-SYLKRLKMDKEFRQKVMLGTPFLVIWLVGFIADLDIDSWLIKGVMYAVMW 327

Query:   238 IVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWI-TPXXXXXXXXXXXXXXXXXW 296
             +V+Q +    FD  +   LPL +Y ATKFW+YITW +W                     +
Sbjct:   328 LVVQFLSKSFFDHSMHSALPLGIYLATKFWMYITWFYWFWNDLPFVTIHLPFLLNSLALF 387

Query:   297 YNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRC 356
             YNF K WK DPG+I A +++K + I+ELAE G+ +   FCSTCL+RKPIRSKHC++CNRC
Sbjct:   388 YNFGKSWKSDPGIIKASEEQKKKTIVELAETGSLDLSIFCSTCLIRKPIRSKHCAVCNRC 447

Query:   357 VAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVM 416
             +AKFDHHCPWVGNC+G+ NH+YF+GY+  LL M C+++YG   YW+  C    S+ ++  
Sbjct:   448 IAKFDHHCPWVGNCVGSGNHRYFMGYLFFLLCMICWMMYGCICYWRIHCA--TSYTKDGF 505

Query:   417 FV-VWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIA 475
             ++ +  +  C  W+ ++ LN+  H +W+ VL+ CQLYQI  LG+TTNERMNA RY HF  
Sbjct:   506 WIYITQIATCSPWMFWMFLNSVFHFMWVAVLIMCQLYQIAVLGITTNERMNARRYKHFKV 565

Query:   476 NPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFV 532
                    SPF+ G ++N +DF    C GL +P  IDW  +Y +  + TS S  YQ V
Sbjct:   566 TATS-IESPFNHGCMRNLIDFFELRCCGLLRPVPIDWTSQYTIEYDQTSGSG-YQLV 620

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:2445110 Zdhhc17 "zinc finger, DHHC domain containing 17" [Mus musculus (taxid:10090)]

 Score = 1296 (461.3 bits), Expect = 3.4e-132, P = 3.4e-132
 Identities = 238/534 (44%), Positives = 338/534 (63%)

Query:     1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
             +KY+IS+GAIVD +GGDL +TPLHWATRQGHL  VV L+++GADP+L+D EG +CIH AA
Sbjct:   106 VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA 165

Query:    61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
             QFGHT IVAYL+AKG +V++ D+NGMT LMW+AY+  S+DPTRLL+TF  S  + DK H 
Sbjct:   166 QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK 225

Query:   121 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL 180
             N ALHWA+ A N   I+ L+    +++  N +G +   L ++     W+    + +  + 
Sbjct:   226 NTALHWAVLAGNTTVISLLLEAGGNVDAQNVKGESALDLAKQRKNV-WMINH-LQEARQA 283

Query:   181 KDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQI-AYMAKLALFISLYIV 239
             K + N   + + +    K  R + M   PF++  L+GFI    I +++ K  ++  ++  
Sbjct:   284 KGYDNP--SFLRKLKADKEFRQKVMLGTPFLVIWLVGFIADLDIDSWLIKGLMYGGVWAT 341

Query:   240 MQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWI-TPXXXXXXXXXXXXXXXXXWYN 298
             +Q +    FD  +   LPL +Y ATKFW+Y+TW FW                     +YN
Sbjct:   342 VQFLSKSFFDHSMHSALPLGIYLATKFWMYVTWFFWFWNDLNFLFIHLPFLANSVALFYN 401

Query:   299 FIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVA 358
             F K WK DPG+I A +++K + I+ELAE G+ +   FCSTCL+RKP+RSKHC +CNRC+A
Sbjct:   402 FGKSWKSDPGIIKATEEQKKKTIVELAETGSLDLSIFCSTCLIRKPVRSKHCGVCNRCIA 461

Query:   359 KFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFV 418
             KFDHHCPWVGNC+GA NH+YF+GY+  LLFM C+++YG   YW   C+   + +    ++
Sbjct:   462 KFDHHCPWVGNCVGAGNHRYFMGYLFFLLFMICWMIYGCVSYWGLHCETTYTKDGFWTYI 521

Query:   419 VWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQ 478
                +  C  W+ ++ LN+  H +W+ VLL CQLYQI  LG+TTNERMNA RY HF     
Sbjct:   522 T-QIATCSPWMFWMFLNSVFHFLWVAVLLMCQLYQITCLGITTNERMNARRYKHFKVTTT 580

Query:   479 GQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFV 532
                 SPF+ G ++N +DF  + C GLF+P  +DW ++Y +  +  S S  YQ V
Sbjct:   581 S-IESPFNHGCVRNIIDFFEFRCCGLFRPVIVDWTRQYTIEYDQISGSG-YQLV 632

GO:0000139 "Golgi membrane" evidence=ISO

GO:0004871 "signal transducer activity" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0007165 "signal transduction" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=ISO

GO:0015693 "magnesium ion transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016409 "palmitoyltransferase activity" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IDA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=ISO

GO:0030660 "Golgi-associated vesicle membrane" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=ISO

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E9PTT0 Zdhhc17 "Protein Zdhhc17" [Rattus norvegicus (taxid:10116)]

 Score = 1295 (460.9 bits), Expect = 4.4e-132, P = 4.4e-132
 Identities = 237/534 (44%), Positives = 338/534 (63%)

Query:     1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
             +KY+IS+GAIVD +GGDL +TPLHWATRQGHL  VV L+++GADP+L+D EG +CIH AA
Sbjct:    96 VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA 155

Query:    61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
             QFGHT IVAYL+AKG +V++ D+NGMT LMW+AY+  S+DPTRLL+TF  S  + DK H 
Sbjct:   156 QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK 215

Query:   121 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL 180
             N ALHWA+ A N   I+ L+    +++  N +G +   L ++     W+    + +  + 
Sbjct:   216 NTALHWAVLAGNTTVISLLLEAGGNVDAQNVKGESALDLAKQRKNV-WMINH-LQEARQA 273

Query:   181 KDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQI-AYMAKLALFISLYIV 239
             K + N   + + +    K  R + M   PF++  L+GFI    I +++ K  ++  ++  
Sbjct:   274 KGYDNP--SFLRKLKADKEFRQKVMLGTPFLVIWLVGFIADLNIDSWLIKGLMYGGVWAT 331

Query:   240 MQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWI-TPXXXXXXXXXXXXXXXXXWYN 298
             +Q +    FD  +   LPL +Y ATKFW+Y+TW FW                     +YN
Sbjct:   332 VQFLSKSFFDHSMHSALPLGIYLATKFWMYVTWFFWFWNDLSFLSIHLPFLANSVALFYN 391

Query:   299 FIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVA 358
             F K WK DPG+I A +++K + I+ELAE G+ +   FCSTCL+RKP+RSKHC +CNRC+A
Sbjct:   392 FGKSWKSDPGIIKATEEQKKKTIVELAETGSLDLSIFCSTCLIRKPVRSKHCGVCNRCIA 451

Query:   359 KFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFV 418
             KFDHHCPWVGNC+GA NH+YF+GY+  LLFM C+++YG   YW   C+   + +    ++
Sbjct:   452 KFDHHCPWVGNCVGAGNHRYFMGYLFFLLFMICWMIYGCVSYWGLHCETTYTKDGFWTYI 511

Query:   419 VWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQ 478
                +  C  W+ ++ LN+  H +W+ VLL CQ+YQI  LG+TTNERMNA RY HF     
Sbjct:   512 T-QIATCSPWMFWMFLNSVFHFMWVAVLLMCQMYQITCLGITTNERMNARRYKHFKVTTT 570

Query:   479 GQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFV 532
                 SPF+ G ++N +DF  + C GLF+P  +DW ++Y +  +  S S  YQ V
Sbjct:   571 S-IESPFNHGCVRNIIDFFEFRCCGLFRPVIVDWTRQYTIEYDQISGSG-YQLV 622

GO:0004871 "signal transducer activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IEA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=IEA

GO:0030660 "Golgi-associated vesicle membrane" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

UNIPROTKB|Q8IUH5 ZDHHC17 "Palmitoyltransferase ZDHHC17" [Homo sapiens (taxid:9606)]

 Score = 1291 (459.5 bits), Expect = 1.2e-131, P = 1.2e-131
 Identities = 237/534 (44%), Positives = 339/534 (63%)

Query:     1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
             +KY+IS+GAIVD +GGDL +TPLHWATRQGHL  VV L+++GADP+L+D EG +CIH AA
Sbjct:   106 VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA 165

Query:    61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
             QFGHT IVAYL+AKG +V++ D+NGMT LMW+AY+  S+DPTRLL+TF  S  + DK H 
Sbjct:   166 QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK 225

Query:   121 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL 180
             N ALHWA+ A N   I+ L+   ++++  N +G +   L ++     W+    + +  + 
Sbjct:   226 NTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNV-WMINH-LQEARQA 283

Query:   181 KDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQI-AYMAKLALFISLYIV 239
             K + N   + + +    K  R + M   PF++  L+GFI    I +++ K  ++  ++  
Sbjct:   284 KGYDNP--SFLRKLKADKEFRQKVMLGTPFLVIWLVGFIADLNIDSWLIKGLMYGGVWAT 341

Query:   240 MQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWI-TPXXXXXXXXXXXXXXXXXWYN 298
             +Q +    FD  +   LPL +Y ATKFW+Y+TW FW                     +YN
Sbjct:   342 VQFLSKSFFDHSMHSALPLGIYLATKFWMYVTWFFWFWNDLNFLFIHLPFLANSVALFYN 401

Query:   299 FIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVA 358
             F K WK DPG+I A +++K + I+ELAE G+ +   FCSTCL+RKP+RSKHC +CNRC+A
Sbjct:   402 FGKSWKSDPGIIKATEEQKKKTIVELAETGSLDLSIFCSTCLIRKPVRSKHCGVCNRCIA 461

Query:   359 KFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFV 418
             KFDHHCPWVGNC+GA NH+YF+GY+  LLFM C+++YG   YW   C+   + +    ++
Sbjct:   462 KFDHHCPWVGNCVGAGNHRYFMGYLFFLLFMICWMIYGCISYWGLHCETTYTKDGFWTYI 521

Query:   419 VWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQ 478
                +  C  W+ ++ LN+  H +W+ VLL CQ+YQI  LG+TTNERMNA RY HF     
Sbjct:   522 T-QIATCSPWMFWMFLNSVFHFMWVAVLLMCQMYQISCLGITTNERMNARRYKHFKVTTT 580

Query:   479 GQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFV 532
                 SPF+ G ++N +DF  + C GLF+P  +DW ++Y +  +  S S  YQ V
Sbjct:   581 S-IESPFNHGCVRNIIDFFEFRCCGLFRPVIVDWTRQYTIEYDQISGSG-YQLV 632

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IEA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=IDA

GO:0042953 "lipoprotein transport" evidence=IDA

GO:0004871 "signal transducer activity" evidence=IMP

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IMP

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IDA

GO:0030660 "Golgi-associated vesicle membrane" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0007165 "signal transduction" evidence=IMP

GO:0015693 "magnesium ion transport" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E1BJK1 ZDHHC17 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1287 (458.1 bits), Expect = 3.1e-131, P = 3.1e-131
 Identities = 237/536 (44%), Positives = 339/536 (63%)

Query:     1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
             +KY+IS+GAIVD +GGDL +TPLHWATRQGHL  VV L+++GADP+L+D EG +CIH AA
Sbjct:   106 VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA 165

Query:    61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
             QFGHT IVAYL+AKG +V++ D+NGMT LMW+AY+  S+DPTRLL+TF  S  + DK H 
Sbjct:   166 QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK 225

Query:   121 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL 180
             N ALHWA+ A N   I+ L+   ++++  N +G +   L ++     W+    + +  + 
Sbjct:   226 NTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNV-WMINH-LQEARQA 283

Query:   181 KDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQI-AYMAKLALFISLYIV 239
             K + N   + + +    K  R + M   PF++  L+GFI    I +++ K  ++  ++  
Sbjct:   284 KGYDNP--SFLRKLKADKEFRQKVMLGTPFLVIWLVGFIADLNIDSWLIKGLMYGGVWAT 341

Query:   240 MQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPXXXXXXXXXXX---XXXXXXW 296
             +Q +    FD  +   LPL +Y ATKFW+Y+TW FW                       +
Sbjct:   342 VQFLSKSFFDHSMHSALPLGIYLATKFWMYVTWFFWFWNDAHLNFLFIHLPFLANSIALF 401

Query:   297 YNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRC 356
             YNF K WK DPG+I A +++K + I+ELAE G+ +   FCSTCL+RKP+RSKHC +CNRC
Sbjct:   402 YNFGKSWKSDPGIIKATEEQKKKTIVELAETGSLDLSIFCSTCLIRKPVRSKHCGVCNRC 461

Query:   357 VAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVM 416
             +AKFDHHCPWVGNC+GA NH+YF+GY+  LLFM C+++YG   YW   C+   + +    
Sbjct:   462 IAKFDHHCPWVGNCVGAGNHRYFMGYLFFLLFMICWMIYGCISYWGLHCETSYTKDGFWT 521

Query:   417 FVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIAN 476
             ++   +  C  W+ ++ LN+  H +W+ VLL CQ+YQI  LG+TTNERMNA RY HF   
Sbjct:   522 YIT-QIATCSPWMFWMFLNSVFHFMWVAVLLMCQMYQISCLGITTNERMNARRYKHFKVT 580

Query:   477 PQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFV 532
                   SPF+ G ++N +DF  + C GLF+P  +DW ++Y +  +  S S  YQ V
Sbjct:   581 TTS-IESPFNHGCVRNIIDFFEFRCCGLFRPVIVDWTRQYTIEYDQISGSG-YQLV 634

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=IEA

GO:0030660 "Golgi-associated vesicle membrane" evidence=IEA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1595790 Zdhhc17 "zinc finger, DHHC-type containing 17" [Rattus norvegicus (taxid:10116)]

 Score = 1286 (457.8 bits), Expect = 3.9e-131, P = 3.9e-131
 Identities = 236/534 (44%), Positives = 337/534 (63%)

Query:     1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
             +KY+IS+GAIVD +GGDL +TPLHWATRQGHL  VV L+++GADP+L+D EG +CIH AA
Sbjct:    96 VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA 155

Query:    61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
             QFGHT IVAYL+AKG +V++ D+NGMT LMW+AY+  S+DPTRLL+TF  S  + DK H 
Sbjct:   156 QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK 215

Query:   121 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL 180
             N ALHWA+ A N   I+ L+    +++  N +G +   L ++     W+    + +  + 
Sbjct:   216 NTALHWAVLAGNTTVISLLLEAGGNVDAQNVKGESALDLAKQRKNV-WMINH-LQEARQA 273

Query:   181 KDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQI-AYMAKLALFISLYIV 239
             K + N   + + +    K  R + M   PF++  L+GFI    I +++ K  ++  ++  
Sbjct:   274 KGYDNP--SFLRKLKADKEFRQKVMLGTPFLVIWLVGFIADLNIDSWLIKGLMYGGVWAT 331

Query:   240 MQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWI-TPXXXXXXXXXXXXXXXXXWYN 298
             +Q +    FD  +   LPL +Y ATKFW+Y+TW FW                     +YN
Sbjct:   332 VQFLSKSFFDHSMHSALPLGIYLATKFWMYVTWFFWFWNDLSFLSIHLPFLANSVALFYN 391

Query:   299 FIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVA 358
             F K WK DPG+I A +++K + I+ELAE G+ +   FCSTCL+RKP+RSKHC +CNRC+A
Sbjct:   392 FGKSWKSDPGIIKATEEQKKKTIVELAETGSLDLSIFCSTCLIRKPVRSKHCGVCNRCIA 451

Query:   359 KFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFV 418
             KFDHHCPWVGNC+ A NH+YF+GY+  LLFM C+++YG   YW   C+   + +    ++
Sbjct:   452 KFDHHCPWVGNCVCAGNHRYFMGYLFFLLFMICWMIYGCVSYWGLHCETTYTKDGFWTYI 511

Query:   419 VWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQ 478
                +  C  W+ ++ LN+  H +W+ VLL CQ+YQI  LG+TTNERMNA RY HF     
Sbjct:   512 T-QIATCSPWMFWMFLNSVFHFMWVAVLLMCQMYQITCLGITTNERMNARRYKHFKVTTT 570

Query:   479 GQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFV 532
                 SPF+ G ++N +DF  + C GLF+P  +DW ++Y +  +  S S  YQ V
Sbjct:   571 S-IESPFNHGCVRNIIDFFEFRCCGLFRPVIVDWTRQYTIEYDQISGSG-YQLV 622

GO:0000139 "Golgi membrane" evidence=ISO

GO:0004871 "signal transducer activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0007165 "signal transduction" evidence=ISO

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=ISO

GO:0015693 "magnesium ion transport" evidence=ISO

GO:0016409 "palmitoyltransferase activity" evidence=ISO

GO:0018345 "protein palmitoylation" evidence=ISO

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=ISO

GO:0030660 "Golgi-associated vesicle membrane" evidence=ISO

GO:0042953 "lipoprotein transport" evidence=ISO

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

UNIPROTKB|F1PRB8 ZDHHC17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1286 (457.8 bits), Expect = 3.9e-131, P = 3.9e-131
 Identities = 237/536 (44%), Positives = 339/536 (63%)

Query:     1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
             +KY+IS+GAIVD +GGDL +TPLHWATRQGHL  VV L+++GADP+L+D EG +CIH AA
Sbjct:    76 VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA 135

Query:    61 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
             QFGHT IVAYL+AKG +V++ D+NGMT LMW+AY+  S+DPTRLL+TF  S  + DK H 
Sbjct:   136 QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK 195

Query:   121 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL 180
             N ALHWA+ A N   I+ L+   ++++  N +G +   L ++     W+    + +  + 
Sbjct:   196 NTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNV-WMINH-LQEARQA 253

Query:   181 KDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQI-AYMAKLALFISLYIV 239
             K + N   + + +    K  R + M   PF++  L+GFI    I +++ K  ++  ++  
Sbjct:   254 KGYDNP--SFLRKLKADKEFRQKVMLGTPFLVIWLVGFIADLNIDSWLIKGLMYGGVWAT 311

Query:   240 MQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPXXXXXXXXXXX---XXXXXXW 296
             +Q +    FD  +   LPL +Y ATKFW+Y+TW FW                       +
Sbjct:   312 VQFLSKSFFDHSMHSALPLGIYLATKFWMYVTWFFWFWNDAHLNFLFIHLPFLANSVALF 371

Query:   297 YNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRC 356
             YNF K WK DPG+I A +++K + I+ELAE G+ +   FCSTCL+RKP+RSKHC +CNRC
Sbjct:   372 YNFGKSWKSDPGIIKATEEQKKKTIVELAETGSLDLSIFCSTCLIRKPVRSKHCGVCNRC 431

Query:   357 VAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVM 416
             +AKFDHHCPWVGNC+GA NH+YF+GY+  LLFM C+++YG   YW   C+   + +    
Sbjct:   432 IAKFDHHCPWVGNCVGAGNHRYFMGYLFFLLFMICWMIYGCISYWGLHCETTYTKDGFWT 491

Query:   417 FVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIAN 476
             ++   +  C  W+ ++ LN+  H +W+ VLL CQ+YQI  LG+TTNERMNA RY HF   
Sbjct:   492 YIT-QIATCSPWMFWMFLNSVFHFMWVAVLLMCQMYQISCLGITTNERMNARRYKHFKVT 550

Query:   477 PQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFV 532
                   SPF+ G ++N +DF  + C GLF+P  +DW ++Y +  +  S S  YQ V
Sbjct:   551 TTS-IESPFNHGCVRNIIDFFEFRCCGLFRPVIVDWTRQYTIEYDQISGSG-YQLV 604

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=IEA

GO:0030660 "Golgi-associated vesicle membrane" evidence=IEA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|J9P6L2 ZDHHC17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1147 (408.8 bits), Expect = 2.1e-116, P = 2.1e-116
 Identities = 212/500 (42%), Positives = 309/500 (61%)

Query:    35 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 94
             VV L+++GADP+L+D EG +CIH AAQFGHT IVAYL+AKG +V++ D+NGMT LMW+AY
Sbjct:     2 VVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY 61

Query:    95 KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGL 154
             +  S+DPTRLL+TF  S  + DK H N ALHWA+ A N   I+ L+   ++++  N +G 
Sbjct:    62 RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGE 121

Query:   155 TPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFG 214
             +   L ++     W+    + +  + K + N   + + +    K  R + M   PF++  
Sbjct:   122 SALDLAKQRKNV-WMINH-LQEARQAKGYDNP--SFLRKLKADKEFRQKVMLGTPFLVIW 177

Query:   215 LIGFIFQAQI-AYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWL 273
             L+GFI    I +++ K  ++  ++  +Q +    FD  +   LPL +Y ATKFW+Y+TW 
Sbjct:   178 LVGFIADLNIDSWLIKGLMYGGVWATVQFLSKSFFDHSMHSALPLGIYLATKFWMYVTWF 237

Query:   274 FWI-TPXXXXXXXXXXXXXXXXXWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEP 332
             FW                     +YNF K WK DPG+I A +++K + I+ELAE G+ + 
Sbjct:   238 FWFWNDLNFLFIHLPFLANSVALFYNFGKSWKSDPGIIKATEEQKKKTIVELAETGSLDL 297

Query:   333 LSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCF 392
               FCSTCL+RKP+RSKHC +CNRC+AKFDHHCPWVGNC+GA NH+YF+GY+  LLFM C+
Sbjct:   298 SIFCSTCLIRKPVRSKHCGVCNRCIAKFDHHCPWVGNCVGAGNHRYFMGYLFFLLFMICW 357

Query:   393 VLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLY 452
             ++YG   YW   C+   + +    ++   +  C  W+ ++ LN+  H +W+ VLL CQ+Y
Sbjct:   358 MIYGCISYWGLHCETTYTKDGFWTYIT-QIATCSPWMFWMFLNSVFHFMWVAVLLMCQMY 416

Query:   453 QIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDW 512
             QI  LG+TTNERMNA RY HF         SPF+ G ++N +DF  + C GLF+P  +DW
Sbjct:   417 QISCLGITTNERMNARRYKHFKVTTTS-IESPFNHGCVRNIIDFFEFRCCGLFRPVIVDW 475

Query:   513 MKRYEVYTEPTSLSDKYQFV 532
              ++Y +  +  S S  YQ V
Sbjct:   476 TRQYTIEYDQISGSG-YQLV 494

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	923
pfam01529	167	pfam01529, zf-DHHC, DHHC palmitoyltransferase	4e-41
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-31
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-30
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-30
COG5273	309	COG5273, COG5273, Uncharacterized protein containi	8e-30
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-25
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-24
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-22
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-18
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-17
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	8e-16
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-14
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-14
pfam01529	167	pfam01529, zf-DHHC, DHHC palmitoyltransferase	3e-13
COG5273	309	COG5273, COG5273, Uncharacterized protein containi	3e-12
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-12
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-11
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-11
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-11
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-11
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	7e-11
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-10
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-10
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-09
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-09
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-09
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-09
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	7e-09
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	5e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	6e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-05
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	4e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	5e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-04
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-04
smart00248	30	smart00248, ANK, ankyrin repeats	3e-04
smart00248	30	smart00248, ANK, ankyrin repeats	3e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	6e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	7e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	8e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.002
PHA02716	764	PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provi	0.002
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.003
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.003
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.004
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.004
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.004

>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase

 Score =  148 bits (374), Expect = 4e-41
 Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 12/174 (6%)

Query: 296 WYNFIKCWKGDPGVITAPQDEKFR---YIIELAERGTFEPLSFCSTCLVRKPIRSKHCSI 352
            +++ K    DPG +     EK +      E  E    + L FCSTC + KP RS HC +
Sbjct: 1   LWSYFKTIFTDPGYVPKNPTEKEQEKQPDEESEEGDEEDELKFCSTCNIIKPPRSHHCRV 60

Query: 353 CNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHE 412
           CNRCV +FDHHCPW+ NCIG +NHKYF+ ++  L      +L     Y     +      
Sbjct: 61  CNRCVLRFDHHCPWLNNCIGRRNHKYFLLFLLYLTLYLILLLVLSFYYLVYLIRNIELFF 120

Query: 413 REVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMN 466
             ++ +   +         +L+ +    ++++ LL   LY  I   +TT E + 
Sbjct: 121 FLILSLFSSI--------ILLVLSLFFLLFLSFLLFFHLYL-ILKNITTYEYIK 165

This family includes the well known DHHC zinc binding domain as well as three of the four conserved transmembrane regions found in this family of palmitoyltransferase enzymes. Length = 167

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  117 bits (296), Expect = 4e-31
 Identities = 46/117 (39%), Positives = 69/117 (58%), Gaps = 1/117 (0%)

Query: 539 NEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLL 598
           N  D +  T LH AA N  +E++K  +  GA V+A   D + TPLH A + GHL+ V LL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGR-TPLHLAAKNGHLEIVKLL 59

Query: 599 IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 655
           ++ GAD    D +G+T +H AA+ G+  +V  L+  G +VN +D++G T L  +A  
Sbjct: 60  LEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN 116

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  117 bits (294), Expect = 1e-30
 Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 2/120 (1%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
           TPLH A   GHL+ V LL+++GAD    D++G T +H AA+ GH  IV  L+ KG +VN 
Sbjct: 9   TPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA 68

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 140
           +D++G T L  +A    +LD  +LL+  GA    +DK  G   LH A    +   +  L+
Sbjct: 69  RDKDGNTPLHLAARN-GNLDVVKLLLKHGADVNARDK-DGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  117 bits (294), Expect = 1e-30
 Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 2/120 (1%)

Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
           TPLH A   GHL+ V LL+++GAD    D++G T +H AA+ GH  IV  L+ KG +VN 
Sbjct: 9   TPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA 68

Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 700
           +D++G T L  +A    +LD  +LL+  GA    +DK  G   LH A    +   +  L+
Sbjct: 69  RDKDGNTPLHLAARN-GNLDVVKLLLKHGADVNARDK-DGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|227598 COG5273, COG5273, Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]

 Score =  120 bits (302), Expect = 8e-30
 Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 9/243 (3%)

Query: 233 FISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTS 292
               +IV  V             + + ++  ++  +Y   +   +  +     +LF    
Sbjct: 9   STLGFIVFLVRLLR--TGLYAYKMFIGLFLLSRIVVYTLLVIVKSLSLVVLFIILFIVIL 66

Query: 293 GVLWYNFIKCWKGDPGVITAPQDE-KFRYIIE-LAERGTFEPLSFCSTCLVRKPIRSKHC 350
            +  ++++     DPG +        +R  I  L + G F   +FCSTC + KP RS HC
Sbjct: 67  VLASFSYLLLLVSDPGYLGENITLSGYRETISRLLDDGKFGTENFCSTCNIYKPPRSHHC 126

Query: 351 SICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLF-MCCFVLYGIA--KYWKSKCQF 407
           SICNRCV KFDHHCPW+ NC+G +N+++F  ++   +      +L          S    
Sbjct: 127 SICNRCVLKFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHD 186

Query: 408 QLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNA 467
                  ++F    +     ++   LL  F+  + +  L + +  QI   G +T E    
Sbjct: 187 TSLAICFLIFGCSLLG-VVFFIITTLLLLFLIYLILNNLTTIEFIQISR-GGSTLEFFPL 244

Query: 468 NRY 470
            R 
Sbjct: 245 CRE 247

Length = 309

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  101 bits (254), Expect = 2e-25
 Identities = 45/101 (44%), Positives = 61/101 (60%), Gaps = 1/101 (0%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           +E G DVN  D++  T LH AA N  +EI+K  + +GA V+A       TPLH A R G+
Sbjct: 27  LENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR-DKDGNTPLHLAARNGN 85

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 632
           LD V LL++HGAD    D +G T +H AA+ GH  +V  L+
Sbjct: 86  LDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 97.7 bits (244), Expect = 2e-24
 Identities = 40/94 (42%), Positives = 59/94 (62%), Gaps = 3/94 (3%)

Query: 549 LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM 608
           LH AA N  +E++K  + +GA V+   GD   T LH A R G+L+ V LL++HGAD    
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL--GD-TDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 609 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 642
           D +G+T +H AA+ G+  IV  L+  G ++NL+D
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 94.0 bits (234), Expect = 1e-22
 Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 2/111 (1%)

Query: 49  DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 108
           D +G T +H AA  GH  +V  L+  G +VN +D +G T L  +A     L+  +LL+  
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKN-GHLEIVKLLLEK 62

Query: 109 GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 159
           GA    +DK  GN  LH A    N   +  L+ H + +   +  G TP  L
Sbjct: 63  GADVNARDK-DGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHL 112

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 94.0 bits (234), Expect = 1e-22
 Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 2/111 (1%)

Query: 609 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 668
           D +G T +H AA  GH  +V  L+  G +VN +D +G T L  +A     L+  +LL+  
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKN-GHLEIVKLLLEK 62

Query: 669 GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 719
           GA    +DK  GN  LH A    N   +  L+ H + +   +  G TP  L
Sbjct: 63  GADVNARDK-DGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHL 112

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 88.7 bits (219), Expect = 1e-19
 Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 9/141 (6%)

Query: 530 QFVEAGQDVNEPDSETVTLLHWAAINNR-----IEIMKYFISQGAIVDAIG--GDLQATP 582
             + +G DVN  D++  T LH AA+N       IE+ K  +  GA +D      +   TP
Sbjct: 91  LLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTP 150

Query: 583 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ- 641
           LHWA   G  D V LL++ GADP   +S G T +  AA+ G   +V  L+ KG++++L  
Sbjct: 151 LHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLK 210

Query: 642 -DRNGMTALMWSAYKVFSLDP 661
            +  G+     S   + +L  
Sbjct: 211 FNLEGVANANVSKRNILNLTS 231

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 83.1 bits (206), Expect = 3e-19
 Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 11/98 (11%)

Query: 23  LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 82
           LH A + G+L+ V LL++ GAD  L D+   T +H AA+ G+  IV  L+  G +VN +D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 83  RNGMTALMWSA----YKVFSLDPTRLLITFGASTTIQD 116
           ++G TAL  +A     ++      +LL+  GA   ++D
Sbjct: 59  KDGNTALHLAARNGNLEIV-----KLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 83.1 bits (206), Expect = 3e-19
 Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 11/98 (11%)

Query: 583 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 642
           LH A + G+L+ V LL++ GAD  L D+   T +H AA+ G+  IV  L+  G +VN +D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 643 RNGMTALMWSA----YKVFSLDPTRLLITFGASTTIQD 676
           ++G TAL  +A     ++      +LL+  GA   ++D
Sbjct: 59  KDGNTALHLAARNGNLEIV-----KLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 79.6 bits (197), Expect = 5e-18
 Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 3/82 (3%)

Query: 1  MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
          +K  + +GA V+   GD   T LH A R G+L+ V LL++HGAD    D +G+T +H AA
Sbjct: 13 VKLLLEKGADVNL--GD-TDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAA 69

Query: 61 QFGHTRIVAYLVAKGINVNLQD 82
          + G+  IV  L+  G ++NL+D
Sbjct: 70 RNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 76.9 bits (190), Expect = 4e-17
 Identities = 37/79 (46%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            +E G DVN  D  T T LH AA N  +EI+K  +  GA V+A   D   T LH A R G
Sbjct: 16  LLEKGADVNLGD--TDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGN-TALHLAARNG 72

Query: 591 HLDSVVLLIQHGADPTLMD 609
           +L+ V LL++HGAD  L D
Sbjct: 73  NLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 80.4 bits (198), Expect = 8e-16
 Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 6/186 (3%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           ++ G DVN  D+E  T LH+A     +E +K     GA V+ I  D    P+H A +   
Sbjct: 111 LDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN-IEDDNGCYPIHIAIKHNF 169

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
            D + LL++ GA   + D+ G + +H AA++G    +  L+  G ++  + +NG T L  
Sbjct: 170 FDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHN 229

Query: 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI-YAKNHVAITTLVSHTSSLEIPN 710
           +     S     LLI   AS   QD I G+  LH AI    +   I  L+ H + + I +
Sbjct: 230 AIIHNRSAIE--LLIN-NASINDQD-IDGSTPLHHAINPPCDIDIIDILLYHKADISIKD 285

Query: 711 AQGLTP 716
            +G  P
Sbjct: 286 NKGENP 291

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 73.3 bits (179), Expect = 2e-14
 Identities = 44/181 (24%), Positives = 68/181 (37%), Gaps = 15/181 (8%)

Query: 536 QDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSV 595
            D        + LL  A+++  +  +       A            PLH A  +G    V
Sbjct: 35  SDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGR-----LPLHSAASKGDDKIV 89

Query: 596 VLLIQHGADPTLMDSEGSTCIHQAA-----QFGHTRIVAYLVAKGI---NVNLQDRNGMT 647
            LL+  GAD    D++G T +H AA       G+  +   L+  G      NL+D +G T
Sbjct: 90  KLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNT 149

Query: 648 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE 707
            L W+A      D   LL+  GA    ++  +G  AL  A        +  L+     L 
Sbjct: 150 PLHWAALN-GDADIVELLLEAGADPNSRNS-YGVTALDPAAKNGRIELVKLLLDKGLHLS 207

Query: 708 I 708
           +
Sbjct: 208 L 208

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 72.9 bits (178), Expect = 3e-14
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 10/147 (6%)

Query: 10  IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA-----QFGH 64
              A        PLH A  +G    V LL+  GAD    D++G T +H AA       G+
Sbjct: 64  RHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGN 123

Query: 65  TRIVAYLVAKGI---NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
             +   L+  G      NL+D +G T L W+A      D   LL+  GA    ++  +G 
Sbjct: 124 IEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALN-GDADIVELLLEAGADPNSRNS-YGV 181

Query: 122 VALHWAIYAKNHVAITTLVSHTSSLEI 148
            AL  A        +  L+     L +
Sbjct: 182 TALDPAAKNGRIELVKLLLDKGLHLSL 208

Length = 235

>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase

 Score = 68.3 bits (167), Expect = 3e-13
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 856 WYNFIKCWKGDPGVITAPQDEKFR---YIIELAERGTFEPLSFCSTCLVRKPIRSKHCSI 912
            +++ K    DPG +     EK +      E  E    + L FCSTC + KP RS HC +
Sbjct: 1   LWSYFKTIFTDPGYVPKNPTEKEQEKQPDEESEEGDEEDELKFCSTCNIIKPPRSHHCRV 60

Query: 913 CNRCVAK 919
           CNRCV +
Sbjct: 61  CNRCVLR 67

This family includes the well known DHHC zinc binding domain as well as three of the four conserved transmembrane regions found in this family of palmitoyltransferase enzymes. Length = 167

>gnl|CDD|227598 COG5273, COG5273, Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 4/129 (3%)

Query: 793 FISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTS 852
               +IV  V             + + ++  ++  +Y   +   +  +     +LF    
Sbjct: 9   STLGFIVFLVRLLR--TGLYAYKMFIGLFLLSRIVVYTLLVIVKSLSLVVLFIILFIVIL 66

Query: 853 GVLWYNFIKCWKGDPGVITAPQDE-KFRYIIE-LAERGTFEPLSFCSTCLVRKPIRSKHC 910
            +  ++++     DPG +        +R  I  L + G F   +FCSTC + KP RS HC
Sbjct: 67  VLASFSYLLLLVSDPGYLGENITLSGYRETISRLLDDGKFGTENFCSTCNIYKPPRSHHC 126

Query: 911 SICNRCVAK 919
           SICNRCV K
Sbjct: 127 SICNRCVLK 135

Length = 309

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 68.9 bits (168), Expect = 4e-12
 Identities = 45/134 (33%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
           T LH A I  +++IMK  I++GA  D    D + +PLH A   G +  + LLI H A   
Sbjct: 104 TPLHLATILKKLDIMKLLIARGADPDIPNTD-KFSPLHLAVMMGDIKGIELLIDHKACLD 162

Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 666
           + D  G T +  A   G   I   L+  G N++   +NG  A +  A +   +D  RL I
Sbjct: 163 IEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFI 222

Query: 667 TFGASTTIQDKIHG 680
             GA   I   I G
Sbjct: 223 KRGADCNIMFMIEG 236

Length = 413

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 64.8 bits (157), Expect = 2e-11
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 8/118 (6%)

Query: 49  DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY----KVFSLDPTRL 104
           D +G   +H AA  G  +IV  L+A G +VN +D +G T L  +A        +++  +L
Sbjct: 70  DLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKL 129

Query: 105 LITFGASTTI---QDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 159
           L+  GA   +   +D+  GN  LHWA    +   +  L+   +     N+ G+T    
Sbjct: 130 LLEAGADLDVNNLRDE-DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDP 186

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 64.8 bits (157), Expect = 2e-11
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 8/118 (6%)

Query: 609 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY----KVFSLDPTRL 664
           D +G   +H AA  G  +IV  L+A G +VN +D +G T L  +A        +++  +L
Sbjct: 70  DLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKL 129

Query: 665 LITFGASTTI---QDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 719
           L+  GA   +   +D+  GN  LHWA    +   +  L+   +     N+ G+T    
Sbjct: 130 LLEAGADLDVNNLRDE-DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDP 186

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 64.8 bits (157), Expect = 2e-11
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 4/105 (3%)

Query: 1   MKYFISQGAIVDAIG--GDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ 58
            K  +  GA +D      +   TPLHWA   G  D V LL++ GADP   +S G T +  
Sbjct: 127 AKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDP 186

Query: 59  AAQFGHTRIVAYLVAKGINVNLQ--DRNGMTALMWSAYKVFSLDP 101
           AA+ G   +V  L+ KG++++L   +  G+     S   + +L  
Sbjct: 187 AAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNLTS 231

Length = 235

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 66.8 bits (163), Expect = 3e-11
 Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 2/158 (1%)

Query: 559 EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ 618
           EI K  +S GA ++        T LH+AT         LL+ +GA+  + D   ++ +H 
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHH 207

Query: 619 AAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 678
           A +  +  IV  L+  G + + +D+ G T L  S       D  +LL+  G     +  I
Sbjct: 208 AVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYI 267

Query: 679 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 716
            G  ALH +I ++  + +  L+ + + +   N+  LTP
Sbjct: 268 LGLTALHSSIKSERKLKL--LLEYGADINSLNSYKLTP 303

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 58.8 bits (143), Expect = 3e-11
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 72
          T LH A   G L+ V  L++ G D    D +G+T +H AA+ G+  ++  L+
Sbjct: 3  TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 58.8 bits (143), Expect = 3e-11
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 632
           T LH A   G L+ V  L++ G D    D +G+T +H AA+ G+  ++  L+
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 65.1 bits (159), Expect = 7e-11
 Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 30/184 (16%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAIN--NRIEIMKYFISQGA---IVDAIGGDLQATPLHWA 586
           +E G +VN PD+  +T L +A     N   I++Y +  GA   I ++ G       LH  
Sbjct: 93  LEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGE----NLLHLY 148

Query: 587 TRQGH--LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN 644
                  L  + LLI  G D    +                  V YL++ G+ +N++D  
Sbjct: 149 LESNKIDLKILKLLIDKGVDINAKNR-----------------VNYLLSYGVPINIKDVY 191

Query: 645 GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS 704
           G T L ++ Y   + +  + L+  GA+  + +K  G+  LH AI   N      L+++  
Sbjct: 192 GFTPLHYAVYNN-NPEFVKYLLDLGANPNLVNKY-GDTPLHIAILNNNKEIFKLLLNNGP 249

Query: 705 SLEI 708
           S++ 
Sbjct: 250 SIKT 253

Length = 422

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 63.0 bits (153), Expect = 3e-10
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 2/155 (1%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           K  +S GA ++        T LH+AT         LL+ +GA+  + D   ++ +H A +
Sbjct: 151 KLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVK 210

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
             +  IV  L+  G + + +D+ G T L  S       D  +LL+  G     +  I G 
Sbjct: 211 HYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGL 270

Query: 122 VALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 156
            ALH +I ++  + +  L+ + + +   N+  LTP
Sbjct: 271 TALHSSIKSERKLKL--LLEYGADINSLNSYKLTP 303

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 62.3 bits (152), Expect = 6e-10
 Identities = 50/183 (27%), Positives = 73/183 (39%), Gaps = 29/183 (15%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNR--IEIMKYFISQGAI---VDAIGGDLQATPLHWA 586
           +  G DVN  D   +T L     +    +E+++  I  GA    VD        + LH  
Sbjct: 139 LRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRF----RSLLHH- 193

Query: 587 TRQGHLDS-------VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR--IVAYLVAKGIN 637
               HL S       V  LI+ G DP   D  G+T +H  A     +  +V  L+  GI+
Sbjct: 194 ----HLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGIS 249

Query: 638 VNLQDRNGMTALMWSAYKVFSLDPT--RLLITFGASTTIQDKIHGNVALHWAIYAKNHVA 695
           +N ++R G T L ++A      +P   R LI  GA         GN  L   +   N  A
Sbjct: 250 INARNRYGQTPLHYAAV---FNNPRACRRLIALGADINAVSS-DGNTPLSLMVRNNNGRA 305

Query: 696 ITT 698
           +  
Sbjct: 306 VRA 308

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 61.2 bits (149), Expect = 1e-09
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 17/131 (12%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRI--EIMKYFISQGAIVDAI---------GGDLQ 579
            ++ G +VN  +S+   LLH    +N+I  +I+K  I +G  ++A          G  + 
Sbjct: 127 LLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPIN 186

Query: 580 A------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA 633
                  TPLH+A    + + V  L+  GA+P L++  G T +H A    +  I   L+ 
Sbjct: 187 IKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLN 246

Query: 634 KGINVNLQDRN 644
            G ++      
Sbjct: 247 NGPSIKTIIET 257

Length = 422

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 79  NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT 138
           N +D +G T L  +A     L+  +LL+  GA    +D   G   LH A    +   +  
Sbjct: 1   NARDEDGRTPLHLAASNG-HLEVVKLLLENGADVNAKDN-DGRTPLHLAAKNGHLEIVKL 58

Query: 139 LVSHTSSLEIPNAQGLTPFML 159
           L+   + +   +  G TP  L
Sbjct: 59  LLEKGADVNARDKDGNTPLHL 79

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 60.0 bits (145), Expect = 3e-09
 Identities = 58/231 (25%), Positives = 93/231 (40%), Gaps = 29/231 (12%)

Query: 510 IDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA 569
            D   R  +Y+      +K      G  +N    ET T L  A  +   +I++ FI  GA
Sbjct: 3   QDL--RMCIYSGDIEAIEKI-IKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGA 59

Query: 570 IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM--------------------- 608
            ++ I   +   PL  A + G  D + LLI +G D +++                     
Sbjct: 60  DINHINTKI-PHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVN 118

Query: 609 --DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 666
             D+E  T +H A + G    +  L   G +VN++D NG   +   A K    D  +LL+
Sbjct: 119 IKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIH-IAIKHNFFDIIKLLL 177

Query: 667 TFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPF 717
             GA   ++D  +G   LH A    ++  I  L+ H + +      G TP 
Sbjct: 178 EKGAYANVKDN-NGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPL 227

Length = 434

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 60.3 bits (146), Expect = 3e-09
 Identities = 59/261 (22%), Positives = 99/261 (37%), Gaps = 52/261 (19%)

Query: 508 ERIDWMKRYEVYTEPTS---LSDKYQFVEA------------GQDVNEPDSETVTLLHWA 552
           + I+++   E Y+   S       +Q VEA            G +VN+PD   +T LH  
Sbjct: 18  KYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHII 77

Query: 553 AINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATR-------------QGHLDS----- 594
                   MK  I       ++   L A    +  R             +          
Sbjct: 78  CKEPNKLGMKEMIRS-INKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYI 136

Query: 595 -------------VVLLIQHGADPTLMD-SEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
                          LL+ +GAD  + D  +G+T +H A +    R+   L++ G NVN+
Sbjct: 137 DKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNI 196

Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI-YAKNHVAITTL 699
            D+    + +  A K ++     +L+  GAST  +DK  GN  LH ++ Y K++  +  L
Sbjct: 197 PDK-TNNSPLHHAVKHYNKPIVHILLENGASTDARDK-CGNTPLHISVGYCKDYDILKLL 254

Query: 700 VSHTSSLEIPNA-QGLTPFML 719
           + H   +   +   GLT    
Sbjct: 255 LEHGVDVNAKSYILGLTALHS 275

Length = 477

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 58.7 bits (142), Expect = 7e-09
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 7/147 (4%)

Query: 533 EAGQDVNEPDSETV-TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
             G D+N  D     T LH+A  N    + +  +S GA V+ I      +PLH A +  +
Sbjct: 155 SYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVN-IPDKTNNSPLHHAVKHYN 213

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQF-GHTRIVAYLVAKGINVNLQDR-NGMTAL 649
              V +L+++GA     D  G+T +H +  +     I+  L+  G++VN +    G+TAL
Sbjct: 214 KPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTAL 273

Query: 650 MWSAYKVFSLDPTRLLITFGASTTIQD 676
             S   + S    +LL+ +GA     +
Sbjct: 274 HSS---IKSERKLKLLLEYGADINSLN 297

Length = 477

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 57.3 bits (138), Expect = 2e-08
 Identities = 39/120 (32%), Positives = 54/120 (45%), Gaps = 1/120 (0%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           MK  I++GA  D    D + +PLH A   G +  + LLI H A   + D  G T +  A 
Sbjct: 118 MKLLIARGADPDIPNTD-KFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAM 176

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
             G   I   L+  G N++   +NG  A +  A +   +D  RL I  GA   I   I G
Sbjct: 177 AKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEG 236

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 57.3 bits (139), Expect = 2e-08
 Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 5/123 (4%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRI--EIMKYFISQGAIVDAIGGDLQATPLHW-AT 587
            ++AG DV   D    +LLH    + +    I++  I  G    A    L  TPLH  AT
Sbjct: 173 LIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATD-MLGNTPLHSMAT 231

Query: 588 RQGHLDSVVL-LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGM 646
                 S+VL L+  G      +  G T +H AA F + R    L+A G ++N    +G 
Sbjct: 232 GSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGN 291

Query: 647 TAL 649
           T L
Sbjct: 292 TPL 294

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 56.5 bits (136), Expect = 3e-08
 Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
           T LH+A ++G L+S+ +L ++GAD  + D  G   IH A +     I+  L+ KG   N+
Sbjct: 126 TFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV 185

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 140
           +D NG + L  +A +       +LLI  G     + K +G   LH AI   N  AI  L+
Sbjct: 186 KDNNGESPLHNAA-EYGDYACIKLLIDHGNHIMNKCK-NGFTPLHNAII-HNRSAIELLI 242

Query: 141 SHTSSLEIPNAQGLTPF 157
           ++ +S+   +  G TP 
Sbjct: 243 NN-ASINDQDIDGSTPL 258

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 56.5 bits (136), Expect = 3e-08
 Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
           T LH+A ++G L+S+ +L ++GAD  + D  G   IH A +     I+  L+ KG   N+
Sbjct: 126 TFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV 185

Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 700
           +D NG + L  +A +       +LLI  G     + K +G   LH AI   N  AI  L+
Sbjct: 186 KDNNGESPLHNAA-EYGDYACIKLLIDHGNHIMNKCK-NGFTPLHNAII-HNRSAIELLI 242

Query: 701 SHTSSLEIPNAQGLTPF 717
           ++ +S+   +  G TP 
Sbjct: 243 NN-ASINDQDIDGSTPL 258

Length = 434

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 55.8 bits (135), Expect = 7e-08
 Identities = 56/221 (25%), Positives = 86/221 (38%), Gaps = 19/221 (8%)

Query: 509 RIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHW---AAINNRIEIMKYFI 565
               +  Y +     ++ +  + + AG DVN       T LH     +     +I++  +
Sbjct: 11  MEAALYDYLLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLL 70

Query: 566 SQGAIVDA--IGGDLQATPLH-WATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ--AA 620
             GA V+A    G    TPLH +      LD + LLI+ GAD    D  G T +H   + 
Sbjct: 71  EAGADVNAPERCGF---TPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSG 127

Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF---SLDPTRLLITFGASTTIQDK 677
              + +++  L+ KG +VN  D  GMT L  +        +++  RLLI  GA     D 
Sbjct: 128 FNINPKVIRLLLRKGADVNALDLYGMTPL--AVLLKSRNANVELLRLLIDAGADVYAVDD 185

Query: 678 IHGNVALH-WAIYAKNHVAI-TTLVSHTSSLEIPNAQGLTP 716
                 LH      K    I   L+         +  G TP
Sbjct: 186 R-FRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTP 225

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 52 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 95
          G T +H+AA  G   +V YL+ KG+++N  D +G TAL  +A  
Sbjct: 1  GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAEN 44

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 655
           G T +H+AA  G   +V YL+ KG+++N  D +G TAL  +A  
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAEN 44

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 55.5 bits (133), Expect = 1e-07
 Identities = 51/210 (24%), Positives = 86/210 (40%), Gaps = 32/210 (15%)

Query: 508 ERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQ 567
           E I++MK  +   +   L      +E G DVN  D   +T +H+AA     +++   +S 
Sbjct: 141 ESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSY 200

Query: 568 GAIVDAIGGDLQATPLHWATRQGHLDSV-----------------------------VLL 598
           GA V+ I  D   + L  A    ++D++                             +LL
Sbjct: 201 GADVNIIALD-DLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLL 259

Query: 599 IQHGADPTLMDSEGSTCIHQAAQFGH-TRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 657
              G     +D   +T +H A+Q    +R+V  L+ +G +VN ++  G T L   A   +
Sbjct: 260 YDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGY 319

Query: 658 SLDPTRLLITFGASTTIQDKIHGNVALHWA 687
             +  R LI  GA     D+++    LH A
Sbjct: 320 DTENIRTLIMLGADVNAADRLY-ITPLHQA 348

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 545 TVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLI 599
             T LH AAI+ R+E++KY + +G  ++    D   T LH A   G+L+ + LL+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDED-GNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 2   KYFISQGA---IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ 58
            Y +S G    I D  G     TPLH+A    + + V  L+  GA+P L++  G T +H 
Sbjct: 176 NYLLSYGVPINIKDVYG----FTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHI 231

Query: 59  AAQFGHTRIVAYLVAKGINVNLQDRN 84
           A    +  I   L+  G ++      
Sbjct: 232 AILNNNKEIFKLLLNNGPSIKTIIET 257

Length = 422

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 53.9 bits (129), Expect = 3e-07
 Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 13/202 (6%)

Query: 523 TSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRI-EIMKYFISQGAIVDA--IGGDLQ 579
             L       +AG  VN  D    T LH A+    +  ++   + +GA V+A  I G+  
Sbjct: 251 EDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGE-- 308

Query: 580 ATPLHWATRQGH-LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR-IVAYLVAKGIN 637
            TPL+   + G+  +++  LI  GAD    D    T +HQA+     + IV  L+  G N
Sbjct: 309 -TPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGAN 367

Query: 638 VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAST-TIQDKIHGNVALHWAIYAKN-HVA 695
           VN +D    T + ++A +  ++     L+ +GA    +  KI    ALH+A+   N +++
Sbjct: 368 VNARDYCDKTPIHYAAVRN-NVVIINTLLDYGADIEALSQKI--GTALHFALCGTNPYMS 424

Query: 696 ITTLVSHTSSLEIPNAQGLTPF 717
           + TL+   +++   N    TP 
Sbjct: 425 VKTLIDRGANVNSKNKDLSTPL 446

Length = 682

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 53.1 bits (128), Expect = 5e-07
 Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 11/185 (5%)

Query: 32  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH---TRIVAYLVAKGINVNLQDRNGMTA 88
           ++ V  L+  GAD       G T +H    +       IV  L+  G +VN  +R G T 
Sbjct: 27  VEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTP 86

Query: 89  LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVA----ITTLVSHTS 144
           L    Y   +LD  +LLI  GA    +DK+ G   LH  +Y          I  L+   +
Sbjct: 87  LHLYLYNATTLDVIKLLIKAGADVNAKDKV-GRTPLH--VYLSGFNINPKVIRLLLRKGA 143

Query: 145 SLEIPNAQGLTPFMLLEENIGA-PWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRAR 203
            +   +  G+TP  +L ++  A   L +  +D   ++    +  ++++H   +S   RAR
Sbjct: 144 DVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRAR 203

Query: 204 YMFAL 208
            +  L
Sbjct: 204 IVREL 208

Length = 471

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 46.4 bits (111), Expect = 5e-07
 Identities = 16/29 (55%), Positives = 19/29 (65%)

Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMD 49
          TPLH A R GHL+ V LL++ GAD    D
Sbjct: 4  TPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 46.4 bits (111), Expect = 5e-07
 Identities = 16/29 (55%), Positives = 19/29 (65%)

Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMD 609
           TPLH A R GHL+ V LL++ GAD    D
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 21/53 (39%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 38 LIQHG-ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
          L++HG  D    D  G+T +H AA++G   +V +L+  G+++NL+D +G+TAL
Sbjct: 1  LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTAL 53

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 21/53 (39%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 598 LIQHG-ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           L++HG  D    D  G+T +H AA++G   +V +L+  G+++NL+D +G+TAL
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTAL 53

Length = 56

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 50.3 bits (120), Expect = 3e-06
 Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 26/177 (14%)

Query: 4   FISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM--------------- 48
           FI  GA ++ I   +   PL  A + G  D + LLI +G D +++               
Sbjct: 54  FIKHGADINHINTKI-PHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILD 112

Query: 49  --------DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLD 100
                   D+E  T +H A + G    +  L   G +VN++D NG   +   A K    D
Sbjct: 113 CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIH-IAIKHNFFD 171

Query: 101 PTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPF 157
             +LL+  GA   ++D  +G   LH A    ++  I  L+ H + +      G TP 
Sbjct: 172 IIKLLLEKGAYANVKDN-NGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPL 227

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 50.0 bits (119), Expect = 4e-06
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 18/176 (10%)

Query: 552 AAINNRIEIMKYFISQG-----AIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
           A +   ++I +  +  G      I D I      +P+  A +    +++ LL++HGA P 
Sbjct: 9   AILFGELDIARRLLDIGINPNFEIYDGI------SPIKLAMKFRDSEAIKLLMKHGAIPD 62

Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN-LQDRNGMTALMWSAYKVFSLDPTRLL 665
           +   +  + +H A + G  + V  L+  G   + +  ++GMT L   A  +  LD  +LL
Sbjct: 63  VKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPL-HLATILKKLDIMKLL 121

Query: 666 ITFGASTTIQ--DKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 719
           I  GA   I   DK      LH A+   +   I  L+ H + L+I +  G TP ++
Sbjct: 122 IARGADPDIPNTDKF---SPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLII 174

Length = 413

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 43.7 bits (104), Expect = 4e-06
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 51 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDR 83
          +G+T +H AA+ GH  +V  L+  G +VN +D+
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 43.7 bits (104), Expect = 4e-06
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 611 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDR 643
           +G+T +H AA+ GH  +V  L+  G +VN +D+
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 50.0 bits (119), Expect = 5e-06
 Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 25/164 (15%)

Query: 17  DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-- 74
           D   TPL  A R G    V L I+HGAD   ++++    +  A + G   I+  L+    
Sbjct: 33  DETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGV 92

Query: 75  ---------------------GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTT 113
                                GI+VN++D    T L + A K   L+  ++L  +GA   
Sbjct: 93  DTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHY-AIKKGDLESIKMLFEYGADVN 151

Query: 114 IQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPF 157
           I+D  +G   +H AI       I  L+   +   + +  G +P 
Sbjct: 152 IED-DNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPL 194

Length = 434

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 49.9 bits (119), Expect = 5e-06
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 545 TVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD 604
           TV L   AA  + +   +  ++ GA  +    D + TPLH A   GH+  V +L++ GAD
Sbjct: 83  TVELCQLAASGDAVGA-RILLTGGADPNCRDYDGR-TPLHIACANGHVQVVRVLLEFGAD 140

Query: 605 PTLMDSEGSTCIHQAAQFGHTRIVAYL 631
           PTL+D +G T +  A + G   +V  L
Sbjct: 141 PTLLDKDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 49.2 bits (117), Expect = 6e-06
 Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 7/142 (4%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN- 79
           +P+  A +    +++ LL++HGA P +   +  + +H A + G  + V  L+  G   + 
Sbjct: 37  SPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADD 96

Query: 80  LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ--DKIHGNVALHWAIYAKNHVAIT 137
           +  ++GMT L   A  +  LD  +LLI  GA   I   DK      LH A+   +   I 
Sbjct: 97  VFYKDGMTPL-HLATILKKLDIMKLLIARGADPDIPNTDKF---SPLHLAVMMGDIKGIE 152

Query: 138 TLVSHTSSLEIPNAQGLTPFML 159
            L+ H + L+I +  G TP ++
Sbjct: 153 LLIDHKACLDIEDCCGCTPLII 174

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 49.6 bits (119), Expect = 6e-06
 Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 38  LIQHGADPTLMDSEGSTCIHQAAQFGHTR--IVAYLVAKGINVNLQDRNGMTALMWSAYK 95
           LI+ G DP   D  G+T +H  A     +  +V  L+  GI++N ++R G T L ++A  
Sbjct: 208 LIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAV- 266

Query: 96  VFSLDPT--RLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT 138
               +P   R LI  GA         GN  L   +   N  A+  
Sbjct: 267 --FNNPRACRRLIALGADINAVSS-DGNTPLSLMVRNNNGRAVRA 308

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 49.3 bits (118), Expect = 7e-06
 Identities = 46/159 (28%), Positives = 64/159 (40%), Gaps = 16/159 (10%)

Query: 8   GAIVDA--IGGDLQATPLH-WATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ--AAQF 62
           GA V+A    G    TPLH +      LD + LLI+ GAD    D  G T +H   +   
Sbjct: 73  GADVNAPERCGF---TPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFN 129

Query: 63  GHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF---SLDPTRLLITFGASTTIQDKIH 119
            + +++  L+ KG +VN  D  GMT L  +        +++  RLLI  GA     D   
Sbjct: 130 INPKVIRLLLRKGADVNALDLYGMTPL--AVLLKSRNANVELLRLLIDAGADVYAVDDR- 186

Query: 120 GNVALH-WAIYAKNHVAI-TTLVSHTSSLEIPNAQGLTP 156
               LH      K    I   L+         +  G TP
Sbjct: 187 FRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTP 225

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 19/55 (34%), Positives = 26/55 (47%)

Query: 5  ISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
          +  G I          TPLH A + G L+ V  L++ G D  L DS+G T +  A
Sbjct: 2  LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 19/55 (34%), Positives = 26/55 (47%)

Query: 565 ISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 619
           +  G I          TPLH A + G L+ V  L++ G D  L DS+G T +  A
Sbjct: 2   LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 49.1 bits (117), Expect = 1e-05
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 38  LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA---- 93
           L++   DP + DS+G T +H AA  G+   V  L+    NV+++D NG TA +W+A    
Sbjct: 544 LLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTA-LWNAISAK 602

Query: 94  -YKVFSL 99
            +K+F +
Sbjct: 603 HHKIFRI 609

Length = 823

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 49.1 bits (117), Expect = 1e-05
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 598 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA---- 653
           L++   DP + DS+G T +H AA  G+   V  L+    NV+++D NG TA +W+A    
Sbjct: 544 LLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTA-LWNAISAK 602

Query: 654 -YKVFSL 659
            +K+F +
Sbjct: 603 HHKIFRI 609

Length = 823

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 48.7 bits (116), Expect = 1e-05
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 33/137 (24%)

Query: 9   AIVDAIGGDLQA-TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRI 67
           A +D   GD +  TPLH A  +G+ D V++L++H  +  + D+ G+T +  A    H +I
Sbjct: 547 AKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKI 606

Query: 68  --VAY-----------------------------LVAKGINVNLQDRNGMTALMWSAYKV 96
             + Y                             L+ +G+NV+ +D  G TAL   A   
Sbjct: 607 FRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQ-VAMAE 665

Query: 97  FSLDPTRLLITFGASTT 113
             +D  RLLI  GA   
Sbjct: 666 DHVDMVRLLIMNGADVD 682

Length = 823

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 48.7 bits (116), Expect = 1e-05
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 33/137 (24%)

Query: 569 AIVDAIGGDLQA-TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRI 627
           A +D   GD +  TPLH A  +G+ D V++L++H  +  + D+ G+T +  A    H +I
Sbjct: 547 AKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKI 606

Query: 628 --VAY-----------------------------LVAKGINVNLQDRNGMTALMWSAYKV 656
             + Y                             L+ +G+NV+ +D  G TAL   A   
Sbjct: 607 FRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQ-VAMAE 665

Query: 657 FSLDPTRLLITFGASTT 673
             +D  RLLI  GA   
Sbjct: 666 DHVDMVRLLIMNGADVD 682

Length = 823

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 48.1 bits (115), Expect = 2e-05
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 21  TPLHW-ATRQGHLDSVVL-LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 78
           TPLH  AT      S+VL L+  G      +  G T +H AA F + R    L+A G ++
Sbjct: 224 TPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADI 283

Query: 79  NLQDRNGMTAL 89
           N    +G T L
Sbjct: 284 NAVSSDGNTPL 294

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 48.1 bits (114), Expect = 2e-05
 Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 21/190 (11%)

Query: 549 LHWAAINNRIEIMKYF---ISQGAIVDA-----IGGDLQA------TPLHWATRQGHLDS 594
           +H+  IN  IE MK     I Q  ++ A      G D+ A      TP+H+A  +G+   
Sbjct: 134 IHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKM 193

Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 654
           V LL+ +GAD  ++  +  + +  A    +   +  ++    N+N   +N ++ L   A 
Sbjct: 194 VNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNIN---KNDLSLL--KAI 248

Query: 655 KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN-HVAITTLVSHTSSLEIPNAQG 713
           +   L+ + LL   G S    D    N  LH A  A +    +  L+   + +   N +G
Sbjct: 249 RNEDLETSLLLYDAGFSVNSID-DCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKG 307

Query: 714 LTPFMLLEEN 723
            TP  L+ +N
Sbjct: 308 ETPLYLMAKN 317

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 48.1 bits (114), Expect = 2e-05
 Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 12/160 (7%)

Query: 4   FISQGAIVDA--IGGDLQATPLHWATRQGH-LDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
            + +GA V+A  I G+   TPL+   + G+  +++  LI  GAD    D    T +HQA+
Sbjct: 293 LLERGADVNAKNIKGE---TPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQAS 349

Query: 61  QFGHTR-IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAST-TIQDKI 118
                + IV  L+  G NVN +D    T + ++A +  ++     L+ +GA    +  KI
Sbjct: 350 TLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRN-NVVIINTLLDYGADIEALSQKI 408

Query: 119 HGNVALHWAIYAKN-HVAITTLVSHTSSLEIPNAQGLTPF 157
               ALH+A+   N ++++ TL+   +++   N    TP 
Sbjct: 409 --GTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPL 446

Length = 682

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 46.8 bits (111), Expect = 4e-05
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 12/120 (10%)

Query: 531 FVEAGQDVNEPDSETVT-----LLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHW 585
           F+  G +VN  D+E  T     L +     + ++I+K  I  GA ++    D + TPL+ 
Sbjct: 57  FINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGE-TPLYC 115

Query: 586 ATRQGHLDS---VVLLIQHGADPTLMDSEGSTCIHQAAQFGHT---RIVAYLVAKGINVN 639
               G++++   ++ +I++GAD TL+D +G T +    Q  H     I+  L+ KG+++N
Sbjct: 116 LLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDIN 175

Length = 489

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 46.5 bits (110), Expect = 5e-05
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
           TPLH AT    LD + LLI  GADP + +++  + +H A   G  + +  L+     +++
Sbjct: 104 TPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDI 163

Query: 81  QDRNGMTALMWS-AYKVFSLDPTRLLITFGAS 111
           +D  G T L+ + A     +   ++L+  GA+
Sbjct: 164 EDCCGCTPLIIAMAKG--DIAICKMLLDSGAN 193

Length = 413

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 46.8 bits (111), Expect = 5e-05
 Identities = 22/51 (43%), Positives = 31/51 (60%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 71
           TPLH A   GH+  V +L++ GADPTL+D +G T +  A + G   +V  L
Sbjct: 117 TPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 37/104 (35%)

Query: 56  IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 115
           +H AA+ G+  +V  L+ KG +VNL D +                               
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDT------------------------------ 30

Query: 116 DKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 159
                  ALH A    N   +  L+ H + +   +  G T   L
Sbjct: 31  -------ALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHL 67

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 37/104 (35%)

Query: 616 IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 675
           +H AA+ G+  +V  L+ KG +VNL D +                               
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDT------------------------------ 30

Query: 676 DKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 719
                  ALH A    N   +  L+ H + +   +  G T   L
Sbjct: 31  -------ALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHL 67

Length = 91

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 45.4 bits (107), Expect = 1e-04
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 16/172 (9%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRI-EIMKYFISQGAIVDAIGGDLQATPLHWATRQ 589
            +  G DVN  D   +T LH A+  +R  +I+   +  GA V+A       TP+H+A  +
Sbjct: 327 LIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNA-RDYCDKTPIHYAAVR 385

Query: 590 GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRI-VAYLVAKGINVNLQDRNGMTA 648
            ++  +  L+ +GAD   +  +  T +H A    +  + V  L+ +G NVN ++++  T 
Sbjct: 386 NNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTP 445

Query: 649 LMWSAYKVFSLDPTRLLITFGA---STTIQDK--------IHG--NVALHWA 687
           L ++  K   LD   +L+  GA   +  IQ++         HG  N+ LH+ 
Sbjct: 446 LHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYHGIVNILLHYG 497

Length = 682

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 25/160 (15%)

Query: 21  TPLHWATRQGH-----LDSVVLLIQHGADPTLMDSEGSTCIHQAAQ--FGHTRIVAYLVA 73
           TPLH+ +   +      + V LL+++GA+    D+ G T +  A         IV YL+ 
Sbjct: 70  TPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLD 129

Query: 74  KGINVNLQDRNGMTALMWSA-----------------YKVFSLDPTRLLITFGASTTIQD 116
            G NVN+++ +G   L                       + + +    L+++G    I+D
Sbjct: 130 NGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKD 189

Query: 117 KIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 156
              G   LH+A+Y  N   +  L+   ++  + N  G TP
Sbjct: 190 VY-GFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTP 228

Length = 422

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTL 47
          TPLH A   G+L+ V LL+  GAD   
Sbjct: 4  TPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTL 607
           TPLH A   G+L+ V LL+  GAD   
Sbjct: 4   TPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDA 573
           T LH AA N  +E++K  +  GA V+A
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 43.7 bits (103), Expect = 4e-04
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 21/94 (22%)

Query: 17  DLQATPLHWATRQGHLDSVVL---------------------LIQHGADPTLMDSEGSTC 55
           +  ATP H  T +  +D VV                      L+  GADP   D +G T 
Sbjct: 59  NKDATPDHNLTTEEVIDPVVAHMLTVELCQLAASGDAVGARILLTGGADPNCRDYDGRTP 118

Query: 56  IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
           +H A   GH ++V  L+  G +  L D++G T L
Sbjct: 119 LHIACANGHVQVVRVLLEFGADPTLLDKDGKTPL 152

Length = 664

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 43.7 bits (103), Expect = 4e-04
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 21/94 (22%)

Query: 577 DLQATPLHWATRQGHLDSVVL---------------------LIQHGADPTLMDSEGSTC 615
           +  ATP H  T +  +D VV                      L+  GADP   D +G T 
Sbjct: 59  NKDATPDHNLTTEEVIDPVVAHMLTVELCQLAASGDAVGARILLTGGADPNCRDYDGRTP 118

Query: 616 IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           +H A   GH ++V  L+  G +  L D++G T L
Sbjct: 119 LHIACANGHVQVVRVLLEFGADPTLLDKDGKTPL 152

Length = 664

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 43.1 bits (101), Expect = 6e-04
 Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 7/144 (4%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
           TP+H+A  +G+   V LL+ +GAD  ++  +  + +  A    +   +  ++    N+N 
Sbjct: 180 TPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNIN- 238

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN-HVAITTL 139
             +N ++ L   A +   L+ + LL   G S    D    N  LH A  A +    +  L
Sbjct: 239 --KNDLSLL--KAIRNEDLETSLLLYDAGFSVNSID-DCKNTPLHHASQAPSLSRLVPKL 293

Query: 140 VSHTSSLEIPNAQGLTPFMLLEEN 163
           +   + +   N +G TP  L+ +N
Sbjct: 294 LERGADVNAKNIKGETPLYLMAKN 317

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 43.1 bits (101), Expect = 7e-04
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 2/103 (1%)

Query: 26  ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH-TRIVAYLVAKGINVNLQDRN 84
           A R   L++ +LL   G     +D   +T +H A+Q    +R+V  L+ +G +VN ++  
Sbjct: 247 AIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIK 306

Query: 85  GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA 127
           G T L   A   +  +  R LI  GA     D+++    LH A
Sbjct: 307 GETPLYLMAKNGYDTENIRTLIMLGADVNAADRLY-ITPLHQA 348

Length = 682

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 42.6 bits (100), Expect = 8e-04
 Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 2/102 (1%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
           +PLH A   G    + LLI HG         G T +H A    H R    L+    ++N 
Sbjct: 192 SPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAII--HNRSAIELLINNASIND 249

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNV 122
           QD +G T L  +      +D   +L+   A  +I+D    N 
Sbjct: 250 QDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENP 291

Length = 434

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 41.6 bits (97), Expect = 0.002
 Identities = 49/200 (24%), Positives = 87/200 (43%), Gaps = 22/200 (11%)

Query: 518 VYTEP---TSLSDKYQ-----FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA 569
           +Y  P    S  D+ +      +E G +VN  D    T +H+AA+ N + I+   +  GA
Sbjct: 340 LYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGA 399

Query: 570 IVDAIGGDLQATPLHWATRQGH-LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG-HTRI 627
            ++A+   +  T LH+A    +   SV  LI  GA+    + + ST +H A +      +
Sbjct: 400 DIEALSQKI-GTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDV 458

Query: 628 VAYLVAKGINVN-LQDRNGMTALMWSAYKVFSLDPTRLLITFGA----STTIQDKIHGNV 682
           +  L+  G +VN +  +N    L+   Y         +L+ +GA    S  +   ++ N+
Sbjct: 459 IEMLLDNGADVNAINIQNQYPLLIALEYHGI----VNILLHYGAELRDSRVLHKSLNDNM 514

Query: 683 ALHWAIYAKNHVAITTLVSH 702
                I A  H+ I   + H
Sbjct: 515 FSFRYIIA--HICIQDFIRH 532

Length = 682

>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 55/237 (23%), Positives = 87/237 (36%), Gaps = 77/237 (32%)

Query: 533 EAGQDVNEPDSETVTLLHW------------AAINN--RIEIMKYFISQGAIVDAIGGDL 578
           E G D+NEPD+   T+LH                +N  R+++++  IS GA + A+   L
Sbjct: 340 EYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAV-NCL 398

Query: 579 QATPL--HWATRQGHL----------DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR 626
             TPL  +  T Q ++          D V+ +++H     L+     T            
Sbjct: 399 GYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDT----------PC 448

Query: 627 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH------- 679
           I+ +++AK         N  T L    Y+ +             ST I D  H       
Sbjct: 449 IIHHIIAK--------YNIPTDLYTDEYEPYD------------STKIHDVYHCAIIERY 488

Query: 680 --------GNVALHWAIYAKNHVAITT-----LVSHTSSLEIPNAQGLTPFMLLEEN 723
                   G   LH +I +  +  I       L+S   ++ IP   G+TP ML   N
Sbjct: 489 NNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRN 545

Length = 764

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 15/25 (60%), Positives = 19/25 (76%)

Query: 21 TPLHWATRQGHLDSVVLLIQHGADP 45
          TPLH A R G+L+ V LL++HGAD 
Sbjct: 4  TPLHLAARNGNLELVKLLLEHGADI 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 15/25 (60%), Positives = 19/25 (76%)

Query: 581 TPLHWATRQGHLDSVVLLIQHGADP 605
           TPLH A R G+L+ V LL++HGAD 
Sbjct: 4   TPLHLAARNGNLELVKLLLEHGADI 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.8 bits (95), Expect = 0.004
 Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 8/163 (4%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWA-TRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
           ++  I  GA V+A    L  TPLH A T   + D V+ L++ GA+    D    T IH A
Sbjct: 324 IRTLIMLGADVNA-ADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYA 382

Query: 60  AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 119
           A   +  I+  L+  G ++    +   TAL ++          + LI  GA+   ++K  
Sbjct: 383 AVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNK-D 441

Query: 120 GNVALHWAIYAKNHV---AITTLVSHTSSLEIPNAQGLTPFML 159
            +  LH+A   K +     I  L+ + + +   N Q   P ++
Sbjct: 442 LSTPLHYA--CKKNCKLDVIEMLLDNGADVNAINIQNQYPLLI 482

Length = 682

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 532 VEAGQ-DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWA 586
           +E G  D+N  D    T LH AA    +E++++ +  G  ++    D   T L  A
Sbjct: 2   LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGL-TALDLA 56

Length = 56

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDA 573
           T LH AA N  +E++K  +  GA ++A
Sbjct: 4   TPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	923
KOG0509|consensus	600		100.0
KOG0509|consensus	600		100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG4177|consensus	1143		100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG0510|consensus	929		100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
KOG4177|consensus	1143		100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
KOG0510|consensus	929		100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG0508|consensus	615		100.0
KOG4412|consensus	226		100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4412|consensus	226		100.0
KOG0508|consensus	615		99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.96
KOG4369|consensus	2131		99.95
KOG4369|consensus	2131		99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
KOG0507|consensus	854		99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
KOG0505|consensus	527		99.9
KOG0514|consensus	452		99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.89
KOG0502|consensus	296		99.89
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.88
KOG0502|consensus	296		99.87
KOG0507|consensus	854		99.87
PHA02741	169	hypothetical protein; Provisional	99.86
PHA02743	166	Viral ankyrin protein; Provisional	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.85
KOG0505|consensus	527		99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.83
KOG0512|consensus	228		99.83
PHA02741	169	hypothetical protein; Provisional	99.83
KOG0514|consensus	452		99.81
KOG0195|consensus	448		99.81
KOG0512|consensus	228		99.8
PHA02736	154	Viral ankyrin protein; Provisional	99.79
KOG0195|consensus	448		99.78
KOG3676|consensus	782		99.74
KOG3676|consensus	782		99.72
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.72
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.7
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.69
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.66
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.55
KOG1315|consensus	307		99.54
KOG4214|consensus	117		99.5
KOG4214|consensus	117		99.5
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.49
KOG1314|consensus	414		99.48
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.45
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.44
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.44
KOG1710|consensus	396		99.43
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.43
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.43
KOG0515|consensus	752		99.39
KOG1710|consensus	396		99.36
COG5273	309	Uncharacterized protein containing DHHC-type Zn fi	99.35
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.26
PF01529	174	zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR0	99.24
KOG0515|consensus	752		99.2
KOG1312|consensus	341		99.2
KOG1311|consensus	299		99.18
PF01529	174	zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR0	99.11
COG5273	309	Uncharacterized protein containing DHHC-type Zn fi	98.98
KOG0783|consensus	1267		98.9
KOG1313|consensus	309		98.85
KOG0783|consensus	1267		98.81
KOG1312|consensus	341		98.8
KOG0782|consensus	1004		98.72
PF13606	30	Ank_3: Ankyrin repeat	98.71
KOG0818|consensus	669		98.66
PF13606	30	Ank_3: Ankyrin repeat	98.65
KOG0506|consensus	622		98.64
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.63
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.63
KOG0818|consensus	669		98.63
KOG0506|consensus	622		98.57
KOG0705|consensus	749		98.52
KOG1311|consensus	299		98.5
KOG1313|consensus	309		98.45
KOG0522|consensus	560		98.39
KOG1314|consensus	414		98.38
KOG0782|consensus	1004		98.33
KOG0705|consensus	749		98.24
KOG0511|consensus	516		98.22
KOG3609|consensus	822		98.22
KOG0521|consensus	785		98.18
KOG0522|consensus	560		98.18
KOG2384|consensus	223		98.14
KOG3609|consensus	822		98.1
KOG0521|consensus	785		98.09
KOG0520|consensus	975		98.09
KOG2384|consensus	223		98.08
KOG1315|consensus	307		98.02
KOG0520|consensus	975		97.91
KOG0511|consensus	516		97.7
KOG2505|consensus	591		96.75
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.54
KOG2505|consensus	591		96.52
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.44
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.12
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	90.93
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	89.6
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	86.76

>KOG0509|consensus

Probab=100.00  E-value=4.2e-60  Score=508.86  Aligned_cols=398  Identities=39%  Similarity=0.641  Sum_probs=311.7

Q ss_pred             hHhhcccCCCCChhhHHHHHHh-cCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCC
Q psy3899         513 MKRYEVYTEPTSLSDKYQFVEA-GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH  591 (923)
Q Consensus       513 ~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~  591 (923)
                      +...-.+...++++.++.+++. |.+++..|.+|.|+|||||.+++++++++|+++|+++|..++..+.||||||+++|+
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH  124 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence            3345566777889999999998 999999999999999999999999999999999999999998999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCC
Q psy3899         592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS  671 (923)
Q Consensus       592 ~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~  671 (923)
                      ..+|++|+++||||+.+|.+|.||||+|++.|+.-+|.||+.+|+|+|.+|.+|+||||||+++|.... ++.|++.|++
T Consensus       125 ~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~-v~~LL~f~a~  203 (600)
T KOG0509|consen  125 ISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALF-VRRLLKFGAS  203 (600)
T ss_pred             HHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHH-HHHHHHhccc
Confidence            999999999999999999999999999999999999999999999999999999999999999995544 9999999999


Q ss_pred             CcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhccCCCccchhhhHHHHHHHhhcccchhhh
Q psy3899         672 TTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNII  751 (923)
Q Consensus       672 ~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  751 (923)
                      ++..|+.+|+||||||+..||..++++|++.|++.+.+|.+|+||+++|.++.       .......+..+......   
T Consensus       204 ~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~~-------~~~~~~h~~~~~~~~~~---  273 (600)
T KOG0509|consen  204 LLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQERK-------LVAALHHDVVERLGKVV---  273 (600)
T ss_pred             ccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHhh-------hHHHhhccHHHhhcccc---
Confidence            99999779999999999999999999888888999999999999999998861       11111111111111111   


Q ss_pred             hhhcccccccce----eEehhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHhhhh
Q psy3899         752 HRFSKSKTTRAR----YMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFW  827 (923)
Q Consensus       752 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  827 (923)
                      +++.+.......    +++..++..+-+.++|+..+..|..+...+..+++........+.+....+.+|.+++.++.+|
T Consensus       274 ~K~~~~~~~~~~~~f~~~~~~~~~~~~~~g~i~~~~~~w~i~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fw  353 (600)
T KOG0509|consen  274 KKWFLGSKLAALIFFIFLGLFYFISSWLPGVIFLINSLWLIKGLALGKLVLTCLCATRKIVGFLLRPPLLSGFFLSTLFW  353 (600)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhhHHHHhhhhhhhhhhheeccchhhccccccchhHHHHHHHHHHH
Confidence            000000000000    1222222233333333333333333332222223333334445556666777888899999999


Q ss_pred             eeeeeeeeecchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHhcCCCCCc-ccccccCCCcCCC
Q psy3899         828 IYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPL-SFCSTCLVRKPIR  906 (923)
Q Consensus       828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~-~~C~~C~~~kP~R  906 (923)
                      .+++|+..+.|...+...+.+.+....++.++.+...+|||++|...+...+.+.++.+.+.+... +||.+|.++||.|
T Consensus       354 ~~~~w~~~i~~~~~~~~~~~~i~~~l~~~~~f~~~~rsDPg~i~~~~~~~~~tIs~l~d~gkf~~en~FC~~clirKp~r  433 (600)
T KOG0509|consen  354 FYYFWFSKITPYTLFDFHYCFIISVLAYFITFGLFLRSDPGFIPTSTEVGRETISQLIDFGKFDLENRFCLTCLIRKPLR  433 (600)
T ss_pred             HHHhhheeccchhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCchhhHHHHHHHhhccccccccccceeeeeeecCCc
Confidence            999999866665555555555555556666777777899999999999888899999999998887 6999999999999


Q ss_pred             CCCCccccHhhhccc
Q psy3899         907 SKHCSICNRCVAKLI  921 (923)
Q Consensus       907 s~HC~~C~~CV~k~~  921 (923)
                      ||||++|+|||.||-
T Consensus       434 Skhc~vcnrcVarfD  448 (600)
T KOG0509|consen  434 SKHCSVCNRCVARFD  448 (600)
T ss_pred             cchhhhhHHHHhccc
Confidence            999999999999973

>KOG0509|consensus

Probab=100.00  E-value=2e-54  Score=465.13  Aligned_cols=496  Identities=38%  Similarity=0.599  Sum_probs=394.6

Q ss_pred             CccccccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccc
Q psy3899           1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL   80 (923)
Q Consensus         1 v~~Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~   80 (923)
                      +|+||++|+|||+.++..|.|||||||++|+..+|.+|+++||||+.+|.+|.||||+||+.||..+|-|||.+|+++|.
T Consensus        94 ~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~  173 (600)
T KOG0509|consen   94 ARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDL  173 (600)
T ss_pred             HHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCC
Confidence            36778888888888777788888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHH
Q psy3899          81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLL  160 (923)
Q Consensus        81 ~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A  160 (923)
                      +|.+|+||||+||.+|+... ++.|++.|++++..|..+|+||||+|+..|+.++++.|++.|++.+..|.+|.||+++|
T Consensus       174 ~D~~grTpLmwAaykg~~~~-v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA  252 (600)
T KOG0509|consen  174 RDNNGRTPLMWAAYKGFALF-VRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLA  252 (600)
T ss_pred             cCCCCCCHHHHHHHhcccHH-HHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHH
Confidence            88888888888888886333 77888888888877743788888888888888888866666677777788888888888


Q ss_pred             HhhcCCCCCchhhhhHHHH----HHhhhhhhhhhHhhhcccchhhhhHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy3899         161 EENIGAPWLGKATVDKITE----LKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISL  236 (923)
Q Consensus       161 ~~~g~~~~~~~~~v~~L~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (923)
                      .+..        ++..+..    ......++...........  ..+..+..+.+...+.+.+..++..+.-++-.....
T Consensus       253 ~~~~--------~~~~~~h~~~~~~~~~~~K~~~~~~~~~~~--~f~~~~~~~~~~~~~~g~i~~~~~~w~i~~~~L~~~  322 (600)
T KOG0509|consen  253 QERK--------LVAALHHDVVERLGKVVKKWFLGSKLAALI--FFIFLGLFYFISSWLPGVIFLINSLWLIKGLALGKL  322 (600)
T ss_pred             HHhh--------hHHHhhccHHHhhcccccchhhhhHHHHHH--HHHHHHHHHHHHhhccchhhhhhhHHHHhhhhhhhh
Confidence            7661        2211111    0001111111100000111  111556677778888888888888666777555666


Q ss_pred             HHHHHHhhhhccccccccccchhhhhhhHHHhhhhHHHhhhhhhhHHHHHhhhhhhhHHHHhhhhhccCCCccccCChhh
Q psy3899         237 YIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDE  316 (923)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (923)
                      ++......+.+......+.++......+.+|.++.|+..+.|-.-....+.+++..-..++.+....+.|||+++...+.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fw~~~~w~~~i~~~~~~~~~~~~i~~~l~~~~~f~~~~rsDPg~i~~~~~~  402 (600)
T KOG0509|consen  323 VLTCLCATRKIVGFLLRPPLLSGFFLSTLFWFYYFWFSKITPYTLFDFHYCFIISVLAYFITFGLFLRSDPGFIPTSTEV  402 (600)
T ss_pred             hhheeccchhhccccccchhHHHHHHHHHHHHHHhhheeccchhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCchhh
Confidence            66778888889999999999999999999999999999888888888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCC-ccccccccccCCcCcCccchhhHhhccCCCCccccccccCcchhHHHHHHHHHHHHHHHHHH
Q psy3899         317 KFRYIIELAERGTFEPL-SFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLY  395 (923)
Q Consensus       317 ~~~~~~~~~~~~~~~~~-~~c~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (923)
                      .++++..+.+.|.++.. +||..|++++|++++||+.|++|+.+|||||||+.+|+|.+||++|..+++.+...+.+..+
T Consensus       403 ~~~tIs~l~d~gkf~~en~FC~~clirKp~rSkhc~vcnrcVarfDHhCPwi~ncVG~kNh~~F~~Fl~~l~~~~~~~l~  482 (600)
T KOG0509|consen  403 GRETISQLIDFGKFDLENRFCLTCLIRKPLRSKHCSVCNRCVARFDHHCPWIGNCVGLKNHRLFVFFLLTLLTVIVFYLY  482 (600)
T ss_pred             HHHHHHHhhccccccccccceeeeeeecCCccchhhhhHHHHhccccCCCccccccCccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998 69999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccccccchhhHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhcccccccc
Q psy3899         396 GIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIA  475 (923)
Q Consensus       396 ~~~~yl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~q~~~i~~~~~~~~~~~~~~~~~~~~~  475 (923)
                      .+..|+...+..... -.+.+..+.....+.+.+.-+......|..+......+|-.+.+..+++.++.++..|+.+...
T Consensus       483 ~~~~y~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~n~~~~~t~~~~~~~~~~~~~~c~~~tt~e~~n~~r~~~~~~  561 (600)
T KOG0509|consen  483 LCLYYIMNLENASTI-YVGFLIAVQAFRIPKPVTGNLLGNEDLNPTWGSTSTKCQHYNCACLHLTTNEQINVKRYEHLGI  561 (600)
T ss_pred             HHHHHHhhcchhHHH-HHHHHHHHHHHhCCccceeeeeeccccccccccccccccccceeeecccHHHHHHHHHhhcccc
Confidence            999999888764322 3456777777788888888888888888888888888888888899999999999999888776


Q ss_pred             CCCCCCCCccccccccccccccccccccCCCcch
Q psy3899         476 NPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPER  509 (923)
Q Consensus       476 ~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~  509 (923)
                      . +.....|...+...+..|+....+.+......
T Consensus       562 ~-~~~~~~~~s~g~~~Nl~df~~~~~~~~~~~~~  594 (600)
T KOG0509|consen  562 K-RGPTRSPFSPGPIRNLVDFFLCSDCNLPLNDR  594 (600)
T ss_pred             c-cCcCCCCCCchhhhcchheeecccCcCcchhh
Confidence            6 44467788888888888887776665544333

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-52  Score=502.67  Aligned_cols=420  Identities=20%  Similarity=0.195  Sum_probs=342.3

Q ss_pred             ccccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCChHHHHHHHhCcHH----------------
Q psy3899           4 FISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD-PTLMDSEGSTCIHQAAQFGHTR----------------   66 (923)
Q Consensus         4 Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~-~~~~d~~g~TpLh~Aa~~g~~~----------------   66 (923)
                      |+++|++.+..+.. +.||||.|++.|+.|+|+.|++.+.+ ++..|..|+||||+|+..++..                
T Consensus        27 ~~~~~~~~~~~~~~-~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~  105 (682)
T PHA02876         27 LHKHGANQCENESI-PFTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDI  105 (682)
T ss_pred             Hhhhhhhhcccccc-cchHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccc
Confidence            56788888888654 99999999999999999999999776 5678999999999998665531                


Q ss_pred             ---------------HHHHHHHC--CCccccc----CCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHH
Q psy3899          67 ---------------IVAYLVAK--GINVNLQ----DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALH  125 (923)
Q Consensus        67 ---------------iv~~Ll~~--ga~vn~~----d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~  125 (923)
                                     +++.|-+.  |.++...    ..+..++|+.|+..| +.+++++|++.|++++.+|. .|.||||
T Consensus       106 ~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~i~k~Ll~~Gadvn~~d~-~G~TpLh  183 (682)
T PHA02876        106 KYASIILNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQD-ELLIAEMLLEGGADVNAKDI-YCITPIH  183 (682)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCC-cHHHHHHHHhCCCCCCCCCC-CCCCHHH
Confidence                           12222221  2232221    223457888888888 59999999999999999999 9999999


Q ss_pred             HHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHHHHhhhhhhhhhHhhhcccchhhhhHH
Q psy3899         126 WAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYM  205 (923)
Q Consensus       126 ~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (923)
                      +||..|+.++|++|+++|++++..+..|.||||+|+..|+.+     +++.|++.........                 
T Consensus       184 ~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~-----ivk~Ll~~~~~~~~~~-----------------  241 (682)
T PHA02876        184 YAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNID-----TIKAIIDNRSNINKND-----------------  241 (682)
T ss_pred             HHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHH-----HHHHHHhcCCCCCCCc-----------------
Confidence            999999999999999999999999999999999999999999     9999886111100000                 


Q ss_pred             hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhHHHhhhhHHHhhhhhhhHHHH
Q psy3899         206 FALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVS  285 (923)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (923)
                                                                                                      
T Consensus       242 --------------------------------------------------------------------------------  241 (682)
T PHA02876        242 --------------------------------------------------------------------------------  241 (682)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhhhhhhHHHHhhhhhccCCCccccCChhhHHHHHHHHHhcCCCCCCccccccccccCCcCcCccchhhHhhccCCCCc
Q psy3899         286 LLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCP  365 (923)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  365 (923)
                                                       ..+..++..+                                     
T Consensus       242 ---------------------------------~~L~~ai~~~-------------------------------------  251 (682)
T PHA02876        242 ---------------------------------LSLLKAIRNE-------------------------------------  251 (682)
T ss_pred             ---------------------------------HHHHHHHHcC-------------------------------------
Confidence                                             0000000000                                     


Q ss_pred             cccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHhccCchHHHHHHHHHHHHHHHHH
Q psy3899         366 WVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITV  445 (923)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (923)
                                                                                               +...+..
T Consensus       252 -------------------------------------------------------------------------~~~~~~~  258 (682)
T PHA02876        252 -------------------------------------------------------------------------DLETSLL  258 (682)
T ss_pred             -------------------------------------------------------------------------CHHHHHH
Confidence                                                                                     0000011


Q ss_pred             HHHHHHHHHHHhcchHHHHhhhccccccccCCCCCCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCCh
Q psy3899         446 LLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSL  525 (923)
Q Consensus       446 ll~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (923)
                      ++        ..|.+.+..             +..|.||||.|+..+..                              .
T Consensus       259 Ll--------~~g~~vn~~-------------d~~g~TpLh~Aa~~~~~------------------------------~  287 (682)
T PHA02876        259 LY--------DAGFSVNSI-------------DDCKNTPLHHASQAPSL------------------------------S  287 (682)
T ss_pred             HH--------HCCCCCCCC-------------CCCCCCHHHHHHhCCCH------------------------------H
Confidence            11        123322211             34578999999876541                              2


Q ss_pred             hhHHHHHHhcCCCCCCCCCCCcHhHHHHHcC-cHHHHHHHHhCCCcccccCCCCCchHHHHHHHc-CCHHHHHHHHHCCC
Q psy3899         526 SDKYQFVEAGQDVNEPDSETVTLLHWAAINN-RIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ-GHLDSVVLLIQHGA  603 (923)
Q Consensus       526 ~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~-g~~~~v~~Ll~~g~  603 (923)
                      +.++.|++.|++++.+|.+|.||||+|+..| +.++++.|++.|++++..+.. |.||||+|+.. ++.+++++|+++|+
T Consensus       288 ~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~-g~TpLh~A~~~~~~~~iv~lLl~~ga  366 (682)
T PHA02876        288 RLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRL-YITPLHQASTLDRNKDIVITLLELGA  366 (682)
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccC-CCcHHHHHHHhCCcHHHHHHHHHcCC
Confidence            5778889999999999999999999999999 699999999999999987654 99999999985 57999999999999


Q ss_pred             CCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChH
Q psy3899         604 DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVA  683 (923)
Q Consensus       604 ~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~Tp  683 (923)
                      +++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++...++++|++.|+++|.+|. .|+||
T Consensus       367 din~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~-~G~Tp  445 (682)
T PHA02876        367 NVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNK-DLSTP  445 (682)
T ss_pred             CCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCC-CCChH
Confidence            99999999999999999999999999999999999999999999999999877667789999999999999998 99999


Q ss_pred             HHHHHHcC-CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhcc
Q psy3899         684 LHWAIYAK-NHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI  724 (923)
Q Consensus       684 Lh~A~~~~-~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~~  724 (923)
                      ||+|+..| +.+++++|+++|+|++.+|..|.||+++|....
T Consensus       446 Lh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~  487 (682)
T PHA02876        446 LHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH  487 (682)
T ss_pred             HHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC
Confidence            99999977 689999999999999999999999999998753

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=7e-48  Score=433.80  Aligned_cols=146  Identities=21%  Similarity=0.204  Sum_probs=126.1

Q ss_pred             CccHHHHHHH--cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhc
Q psy3899          19 QATPLHWATR--QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV   96 (923)
Q Consensus        19 g~T~Lh~Aa~--~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g   96 (923)
                      +.++||.++.  .++.++|+.|+++|+++|.+|.+|+||||+||..|+.++|++|+++|+++|.+|.+|.||||+|+..+
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~  116 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTD  116 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcC
Confidence            4689998764  44678999999999999999999999999999999999999999999999999999999999988765


Q ss_pred             C-CCchhHHHHhcCCCccc-ccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCC
Q psy3899          97 F-SLDPTRLLITFGASTTI-QDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGA  166 (923)
Q Consensus        97 ~-~~~vv~lLl~~ga~~~~-~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~  166 (923)
                      + ..+++++|+++|++++. .|. .|.|||| |+..|+.+++++|+++|++++.+|..|+||||+|+..++.
T Consensus       117 ~~~~e~v~lLl~~Gadin~~~d~-~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~  186 (446)
T PHA02946        117 DEVIERINLLVQYGAKINNSVDE-EGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNP  186 (446)
T ss_pred             CchHHHHHHHHHcCCCcccccCC-CCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCC
Confidence            3 36789999999999986 566 8999997 6667899999999999999999999999999998876544

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=5.1e-48  Score=434.93  Aligned_cols=319  Identities=19%  Similarity=0.248  Sum_probs=284.1

Q ss_pred             CccccccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCc--HHHHHHHHHCCCcc
Q psy3899           1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH--TRIVAYLVAKGINV   78 (923)
Q Consensus         1 v~~Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~--~~iv~~Ll~~ga~v   78 (923)
                      |++|+++|+++|.+|.+ |.||||+||+.|+.++|++|+++|++++.+|.+|+||||+|+..++  .+++++|+++|+++
T Consensus        55 v~~Ll~~Gadvn~~d~~-G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadi  133 (446)
T PHA02946         55 VEELLHRGYSPNETDDD-GNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKI  133 (446)
T ss_pred             HHHHHHCcCCCCccCCC-CCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCc
Confidence            57899999999999877 9999999999999999999999999999999999999999998764  89999999999999


Q ss_pred             cc-cCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCc--HHHHHHHHhcCCCCCCCCCCCCC
Q psy3899          79 NL-QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN--HVAITTLVSHTSSLEIPNAQGLT  155 (923)
Q Consensus        79 n~-~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~--~~iv~~Ll~~ga~~~~~~~~g~t  155 (923)
                      |. .|.+|.|||| ||..| +.+++++|++.|++++..|. .|.||||+|+..++  .+++++|+++|++++.+|..|.|
T Consensus       134 n~~~d~~g~tpL~-aa~~~-~~~vv~~Ll~~gad~~~~d~-~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~T  210 (446)
T PHA02946        134 NNSVDEEGCGPLL-ACTDP-SERVFKKIMSIGFEARIVDK-FGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNT  210 (446)
T ss_pred             ccccCCCCCcHHH-HHHCC-ChHHHHHHHhccccccccCC-CCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCC
Confidence            95 6899999998 66677 59999999999999999999 99999999988654  68999999999999999999999


Q ss_pred             hHHHHHhhcCCCCCchhhhhHHHHHHhhhhhhhhhHhhhcccchhhhhHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy3899         156 PFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFIS  235 (923)
Q Consensus       156 ~L~~A~~~g~~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (923)
                      |||+|+..|...                                                                    
T Consensus       211 pLH~Aa~~~~~~--------------------------------------------------------------------  222 (446)
T PHA02946        211 PLHIVCSKTVKN--------------------------------------------------------------------  222 (446)
T ss_pred             HHHHHHHcCCCc--------------------------------------------------------------------
Confidence            999999775333                                                                    


Q ss_pred             HHHHHHHhhhhccccccccccchhhhhhhHHHhhhhHHHhhhhhhhHHHHHhhhhhhhHHHHhhhhhccCCCccccCChh
Q psy3899         236 LYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQD  315 (923)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (923)
                                                                                                      
T Consensus       223 --------------------------------------------------------------------------------  222 (446)
T PHA02946        223 --------------------------------------------------------------------------------  222 (446)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHHHHHhcCCCCCCccccccccccCCcCcCccchhhHhhccCCCCccccccccCcchhHHHHHHHHHHHHHHHHHH
Q psy3899         316 EKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLY  395 (923)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (923)
                                                                                                      
T Consensus       223 --------------------------------------------------------------------------------  222 (446)
T PHA02946        223 --------------------------------------------------------------------------------  222 (446)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhhhccccccchhhHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhcccccccc
Q psy3899         396 GIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIA  475 (923)
Q Consensus       396 ~~~~yl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~q~~~i~~~~~~~~~~~~~~~~~~~~~  475 (923)
                                                                                                      
T Consensus       223 --------------------------------------------------------------------------------  222 (446)
T PHA02946        223 --------------------------------------------------------------------------------  222 (446)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHc
Q psy3899         476 NPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAIN  555 (923)
Q Consensus       476 ~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~  555 (923)
                                                                       .+.++.++ .|+++|.+|..|.||||+|+..
T Consensus       223 -------------------------------------------------~~iv~lLl-~gadin~~d~~G~TpLh~A~~~  252 (446)
T PHA02946        223 -------------------------------------------------VDIINLLL-PSTDVNKQNKFGDSPLTLLIKT  252 (446)
T ss_pred             -------------------------------------------------HHHHHHHH-cCCCCCCCCCCCCCHHHHHHHh
Confidence                                                             11222233 3678899999999999999999


Q ss_pred             Cc-HHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHc
Q psy3899         556 NR-IEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK  634 (923)
Q Consensus       556 g~-~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  634 (923)
                      ++ .+++++|+++|++.+      ++| +++|+..++.++++++.++|.      ..|.||||+|++.|+.+++++|+++
T Consensus       253 ~~~~~~~~~Ll~~g~~~~------~~~-~~~a~~~~~~~~~e~l~~~g~------~~~~TpLh~Aa~~g~~eivk~Ll~~  319 (446)
T PHA02946        253 LSPAHLINKLLSTSNVIT------DQT-VNICIFYDRDDVLEIINDKGK------QYDSTDFKMAVEVGSIRCVKYLLDN  319 (446)
T ss_pred             CChHHHHHHHHhCCCCCC------CcH-HHHHHHcCchHHHHHHHHcCc------ccCCCHHHHHHHcCCHHHHHHHHHC
Confidence            88 589999999997654      344 899999999999999999875      3578999999999999999999998


Q ss_pred             CCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCC
Q psy3899         635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS  704 (923)
Q Consensus       635 g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~ga  704 (923)
                      |.       .|.||||+|+..+ +.+++++|+.+|+++|.. . .|.||||+|+..++.++++.|+++..
T Consensus       320 ~~-------~~~t~L~~A~~~~-~~~~v~~Ll~~ga~~n~~-~-~G~t~l~~a~~~~~~~~~~~ll~~~~  379 (446)
T PHA02946        320 DI-------ICEDAMYYAVLSE-YETMVDYLLFNHFSVDSV-V-NGHTCMSECVRLNNPVILSKLMLHNP  379 (446)
T ss_pred             CC-------ccccHHHHHHHhC-HHHHHHHHHHCCCCCCCc-c-ccccHHHHHHHcCCHHHHHHHHhcCc
Confidence            64       5799999999988 899999999999999985 4 79999999999999999999999543

>KOG4177|consensus

Probab=100.00  E-value=1.3e-48  Score=455.46  Aligned_cols=276  Identities=23%  Similarity=0.256  Sum_probs=231.8

Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhccccccccCCCCCCCCccccccccccccccccccccC
Q psy3899         425 CDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGL  504 (923)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~ll~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~  504 (923)
                      +.+++++.++...+....+..++.        .|.+             .+.....|.||||.++..+..++++.+...-
T Consensus       372 ~k~~~pl~la~~~g~~~~v~Lll~--------~ga~-------------~~~~gk~gvTplh~aa~~~~~~~v~l~l~~g  430 (1143)
T KOG4177|consen  372 EKGFTPLHLAVKSGRVSVVELLLE--------AGAD-------------PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRG  430 (1143)
T ss_pred             ccCCcchhhhcccCchhHHHhhhh--------ccCC-------------cccCCCCCcceeeehhhccCcceEEEEeccC
Confidence            345555666666666665555542        2333             3333566889999999999998888766533


Q ss_pred             CCcchhhh--hHhhcccCCCC-ChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCch
Q psy3899         505 FKPERIDW--MKRYEVYTEPT-SLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQAT  581 (923)
Q Consensus       505 ~~~~~~~~--~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t  581 (923)
                      ..++..+.  .+.++.+...+ ..+....++..|.++|..-..|.||||+|+..|+.++++.+++.++..+..... |.|
T Consensus       431 A~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~-~l~  509 (1143)
T KOG4177|consen  431 ASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKK-GLT  509 (1143)
T ss_pred             CChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchh-ccc
Confidence            33333322  33444444554 677888888999999999999999999999999999999999999777765544 999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcch
Q psy3899         582 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP  661 (923)
Q Consensus       582 ~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~  661 (923)
                      ++|.|...+...+++.++++|++++.++..|+||||.|+.+|+.++|++|+++|+|++.+|+.|+||||.||..| +.++
T Consensus       510 ~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G-~~~i  588 (1143)
T KOG4177|consen  510 PLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQG-HNDI  588 (1143)
T ss_pred             hhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcC-hHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHhcc
Q psy3899         662 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS-----LEIPNAQGLTPFMLLEENI  724 (923)
Q Consensus       662 ~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad-----~~~~d~~g~tpl~~a~~~~  724 (923)
                      +++|+++|+++|..|- .|.||||+|+..|+.++++.|+..+++     ....+..|.||.+++.+..
T Consensus       589 ~~LLlk~GA~vna~d~-~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e~~~  655 (1143)
T KOG4177|consen  589 AELLLKHGASVNAADL-DGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVAEELD  655 (1143)
T ss_pred             HHHHHHcCCCCCcccc-cCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChhhHHHHhh
Confidence            9999999999999998 999999999999999999999999998     7888899999999988753

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.3e-48  Score=462.28  Aligned_cols=196  Identities=22%  Similarity=0.242  Sum_probs=177.8

Q ss_pred             CCCCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHc-C
Q psy3899         478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAIN-N  556 (923)
Q Consensus       478 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~-g  556 (923)
                      +..|.||||.|+..+.                              ..+.++.|+..|++++..|..|.||||+|+.. +
T Consensus       304 d~~g~TpLh~Aa~~g~------------------------------~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~  353 (682)
T PHA02876        304 NIKGETPLYLMAKNGY------------------------------DTENIRTLIMLGADVNAADRLYITPLHQASTLDR  353 (682)
T ss_pred             CCCCCCHHHHHHHhCC------------------------------CHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCC
Confidence            3446899999987652                              15788899999999999999999999999985 5


Q ss_pred             cHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCc-HHHHHHHHHcC
Q psy3899         557 RIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH-TRIVAYLVAKG  635 (923)
Q Consensus       557 ~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~-~~~v~~Ll~~g  635 (923)
                      +.++++.|++.|++++..+.. |.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ ..++++|+++|
T Consensus       354 ~~~iv~lLl~~gadin~~d~~-G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~g  432 (682)
T PHA02876        354 NKDIVITLLELGANVNARDYC-DKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRG  432 (682)
T ss_pred             cHHHHHHHHHcCCCCccCCCC-CCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCC
Confidence            789999999999999987655 9999999999999999999999999999999999999999998766 56799999999


Q ss_pred             CCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy3899         636 INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE  707 (923)
Q Consensus       636 ~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~  707 (923)
                      +++|.+|..|+||||+|+..+.+.+++++|++.|++++.+|. .|.||||+|+.++  .+++.|+.+|++..
T Consensus       433 adin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~-~g~tpl~~a~~~~--~~v~~Ll~~~a~~~  501 (682)
T PHA02876        433 ANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINI-QNQYPLLIALEYH--GIVNILLHYGAELR  501 (682)
T ss_pred             CCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHhC--CHHHHHHHCCCCCC
Confidence            999999999999999999887678999999999999999998 9999999999876  57999999999765

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-47  Score=446.53  Aligned_cols=387  Identities=15%  Similarity=0.149  Sum_probs=303.8

Q ss_pred             CccccccCcccccccCCCCccHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHH----HHHHHHH
Q psy3899           1 MKYFISQGAIVDAIGGDLQATPLHWATRQ---GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR----IVAYLVA   73 (923)
Q Consensus         1 v~~Li~~g~~~n~~~~~~g~T~Lh~Aa~~---g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~----iv~~Ll~   73 (923)
                      |+.|+.+|.+++..|.. |+||||+||+.   |+.++|++||++|++++.+|..|+||||.|+..||.+    +++.|++
T Consensus        15 ~~~l~~~~~~~~~~d~~-g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~   93 (661)
T PHA02917         15 LKQMLRDRDPNDTRNQF-KNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLE   93 (661)
T ss_pred             HHHHHhccCcccccCCC-CCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHh
Confidence            45677899999988766 99999998666   8899999999999999999999999999999999954    5688988


Q ss_pred             CCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHH--HhCcHHHHHHHHhcCCCCCCCCC
Q psy3899          74 KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI--YAKNHVAITTLVSHTSSLEIPNA  151 (923)
Q Consensus        74 ~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~--~~g~~~iv~~Ll~~ga~~~~~~~  151 (923)
                      .+..+|..+.  .+++|+|+.+| +.++|++|+++|+++|.+|. .|.||||.|+  ..|+.++|++|+++|++++.+|.
T Consensus        94 ~~~~~n~~~~--~~~~~~a~~~~-~~e~vk~Ll~~Gadin~~d~-~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~  169 (661)
T PHA02917         94 ATGYSNINDF--NIFSYMKSKNV-DVDLIKVLVEHGFDLSVKCE-NHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDE  169 (661)
T ss_pred             ccCCCCCCCc--chHHHHHhhcC-CHHHHHHHHHcCCCCCccCC-CCccHHHHHHHccCCCHHHHHHHHHcCCCcccccc
Confidence            7655555442  36677777777 59999999999999999999 9999999654  57899999999999999986654


Q ss_pred             ---CC-----------CChHHHHHhhc-----------CCCCCchhhhhHHHHHHhhhhhhhhhHhhhcccchhhhhHHh
Q psy3899         152 ---QG-----------LTPFMLLEENI-----------GAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMF  206 (923)
Q Consensus       152 ---~g-----------~t~L~~A~~~g-----------~~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (923)
                         .|           .||||+|+..+           +.+     ++++|++                           
T Consensus       170 ~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~e-----iv~~Li~---------------------------  217 (661)
T PHA02917        170 DDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPE-----VVKCLIN---------------------------  217 (661)
T ss_pred             ccccccccccccccccccHHHHHHhhcccccccccccCcHH-----HHHHHHH---------------------------
Confidence               33           59999997632           223     4444443                           


Q ss_pred             hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhHHHhhhhHHHhhhhhhhHHHHH
Q psy3899         207 ALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSL  286 (923)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (923)
                                                                                                      
T Consensus       218 --------------------------------------------------------------------------------  217 (661)
T PHA02917        218 --------------------------------------------------------------------------------  217 (661)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhhHHHHhhhhhccCCCccccCChhhHHHHHHHHHhcCCCCCCccccccccccCCcCcCccchhhHhhccCCCCcc
Q psy3899         287 LFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPW  366 (923)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  366 (923)
                                                                                                      
T Consensus       218 --------------------------------------------------------------------------------  217 (661)
T PHA02917        218 --------------------------------------------------------------------------------  217 (661)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHhccCchHHHHHHHHHHHHHHHHHH
Q psy3899         367 VGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVL  446 (923)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  446 (923)
                                                                                                      
T Consensus       218 --------------------------------------------------------------------------------  217 (661)
T PHA02917        218 --------------------------------------------------------------------------------  217 (661)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHhcchHHHHhhhccccccccCCCCCCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChh
Q psy3899         447 LSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLS  526 (923)
Q Consensus       447 l~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (923)
                                .|++++..             +..|.||||.|+..++.+                             .+
T Consensus       218 ----------~Gadvn~~-------------d~~G~TpLh~A~~~g~~~-----------------------------~e  245 (661)
T PHA02917        218 ----------HGIKPSSI-------------DKNYCTALQYYIKSSHID-----------------------------ID  245 (661)
T ss_pred             ----------CCCCcccC-------------CCCCCcHHHHHHHcCCCc-----------------------------HH
Confidence                      12222211             234578888888777543                             46


Q ss_pred             hHHHHHHhcCCCC----CCCCCCCcHhHHHHH-------c--CcHHHHHHHHhCCCcccc-------cCCC---------
Q psy3899         527 DKYQFVEAGQDVN----EPDSETVTLLHWAAI-------N--NRIEIMKYFISQGAIVDA-------IGGD---------  577 (923)
Q Consensus       527 ~~~~ll~~~~~~~----~~~~~g~t~Lh~A~~-------~--g~~~~v~~Ll~~g~~~~~-------~~~~---------  577 (923)
                      +++.|++ |++++    ..|..|.+|+|+|+.       +  .+.+++++|++.|++...       ..+.         
T Consensus       246 ivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~  324 (661)
T PHA02917        246 IVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILK  324 (661)
T ss_pred             HHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHH
Confidence            7777764 77665    355667888888883       1  167888888888876421       1111         


Q ss_pred             --CCchHHHHHH---HcCC--HHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHH-cCCCCCccCCCCCcHH
Q psy3899         578 --LQATPLHWAT---RQGH--LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQDRNGMTAL  649 (923)
Q Consensus       578 --~g~t~Lh~A~---~~g~--~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L  649 (923)
                        .+.+++|.+.   ..|.  .+++++|+++|||++.++..|.++.    .....+++++|+. .|++++..+..|.|||
T Consensus       325 ~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~----~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL  400 (661)
T PHA02917        325 TMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRN----INIDSYTMKYLLKKEGGDAVNHLDDGEIPI  400 (661)
T ss_pred             HhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchh----hcCCHHHHHHHHHhcCCCccccCCCCCChh
Confidence              1344555443   4665  5699999999999999999999864    3567788888887 5999888888899999


Q ss_pred             HHHHHhhC----------------------CcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy3899         650 MWSAYKVF----------------------SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE  707 (923)
Q Consensus       650 h~a~~~~~----------------------~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~  707 (923)
                      |+|++.+.                      ..+++++|+.+|+|++.+|. .|+||||+|+..++.+++++|+++|+|++
T Consensus       401 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~-~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin  479 (661)
T PHA02917        401 GHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDK-RGETLLHKAVRYNKQSLVSLLLESGSDVN  479 (661)
T ss_pred             HHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCC-CCcCHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence            99875431                      24577999999999999998 99999999999999999999999999999


Q ss_pred             CCCCCCCCHHHHHHh
Q psy3899         708 IPNAQGLTPFMLLEE  722 (923)
Q Consensus       708 ~~d~~g~tpl~~a~~  722 (923)
                      .+|..|.|||++|..
T Consensus       480 ~~d~~G~T~L~~A~~  494 (661)
T PHA02917        480 IRSNNGYTCIAIAIN  494 (661)
T ss_pred             CCCCCCCCHHHHHHH
Confidence            999999999999985

>KOG0510|consensus

Probab=100.00  E-value=7.5e-47  Score=412.36  Aligned_cols=352  Identities=24%  Similarity=0.303  Sum_probs=307.4

Q ss_pred             cccccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccC
Q psy3899           3 YFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD   82 (923)
Q Consensus         3 ~Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d   82 (923)
                      ++.++..-.+.++.. |+|++|.|+..+..      ++.-+...+.|..|.||||+|+.....+.+++|++.|++.+..|
T Consensus        46 li~~kns~~~~~~~~-gd~~~~~~~~~~y~------~~~~~~~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n  118 (929)
T KOG0510|consen   46 LILEKNSSTPGKRAF-GDTELHHASARNYI------LSKLAISYAKDSADNTPLHAAVEYNQGDKIQVLLSYGADTPLRN  118 (929)
T ss_pred             HHHHhccccchhhhh-chhHHHHHHhhcch------hhhhhhhhhhhcccCchhHHHhhcchHHHHHHHHhcCCCCChhh
Confidence            455666666776555 99999999998866      44445667789999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHh
Q psy3899          83 RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEE  162 (923)
Q Consensus        83 ~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~  162 (923)
                      .++.+|+|+|+..| ..+..++|+++|+|+|..|. .|.||||+||..++.|+.++|++.|+++...|.+|.+|+|.|++
T Consensus       119 ~~~~aplh~A~~~~-~~s~L~~Ll~~~~dvnl~de-~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~  196 (929)
T KOG0510|consen  119 LNKNAPLHLAADSG-NYSCLKLLLDYGADVNLEDE-NGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAAR  196 (929)
T ss_pred             hhccCchhhccccc-hHHHHHHHHHhcCCcccccc-CCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHH
Confidence            99999999999988 58999999999999999998 99999999999999998899999999999999999999999999


Q ss_pred             hcCCCCCchhhhhHHHHHHhhhhhhhhhHhhhcccchhhhhHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy3899         163 NIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQV  242 (923)
Q Consensus       163 ~g~~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (923)
                      +|..+     +.+..+.                                                               
T Consensus       197 s~s~e-----~mEi~l~---------------------------------------------------------------  208 (929)
T KOG0510|consen  197 SGSKE-----CMEIFLP---------------------------------------------------------------  208 (929)
T ss_pred             hcchh-----hhhhhhc---------------------------------------------------------------
Confidence            98888     4444321                                                               


Q ss_pred             hhhhccccccccccchhhhhhhHHHhhhhHHHhhhhhhhHHHHHhhhhhhhHHHHhhhhhccCCCccccCChhhHHHHHH
Q psy3899         243 IGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYII  322 (923)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (923)
                                                                                                      
T Consensus       209 --------------------------------------------------------------------------------  208 (929)
T KOG0510|consen  209 --------------------------------------------------------------------------------  208 (929)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhcCCCCCCccccccccccCCcCcCccchhhHhhccCCCCccccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3899         323 ELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWK  402 (923)
Q Consensus       323 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~  402 (923)
                                                                                                      
T Consensus       209 --------------------------------------------------------------------------------  208 (929)
T KOG0510|consen  209 --------------------------------------------------------------------------------  208 (929)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccccccchhhHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhccccccccCCCCCCC
Q psy3899         403 SKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFI  482 (923)
Q Consensus       403 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (923)
                               +.|                                                                    
T Consensus       209 ---------~~g--------------------------------------------------------------------  211 (929)
T KOG0510|consen  209 ---------EHG--------------------------------------------------------------------  211 (929)
T ss_pred             ---------ccc--------------------------------------------------------------------
Confidence                     000                                                                    


Q ss_pred             CccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCcHHHHH
Q psy3899         483 SPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMK  562 (923)
Q Consensus       483 t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~  562 (923)
                                                                       .+.+.++|..+.+|.||||.|+..|+.++++
T Consensus       212 -------------------------------------------------~~r~~~in~~~n~~~~pLhlAve~g~~e~lk  242 (929)
T KOG0510|consen  212 -------------------------------------------------YERQTHINFDNNEKATPLHLAVEGGDIEMLK  242 (929)
T ss_pred             -------------------------------------------------chhhcccccccCCCCcchhhhhhcCCHHHHH
Confidence                                                             0122456777888999999999999999999


Q ss_pred             HHHhCCCccccc--------------CCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHH
Q psy3899         563 YFISQGAIVDAI--------------GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV  628 (923)
Q Consensus       563 ~Ll~~g~~~~~~--------------~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v  628 (923)
                      ..|+.|+.....              .+..|.||||+||++|+.+.++.|+..|++++.++.++.||||.|+.+|+.+++
T Consensus       243 ~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv  322 (929)
T KOG0510|consen  243 MCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTV  322 (929)
T ss_pred             HHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHH
Confidence            999887653321              245599999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH-cC-CCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCc---ccccCCCChHHHHHHHcCCHHHHHHHHHCC
Q psy3899         629 AYLVA-KG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTT---IQDKIHGNVALHWAIYAKNHVAITTLVSHT  703 (923)
Q Consensus       629 ~~Ll~-~g-~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~---~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~g  703 (923)
                      +-|++ .| ..+|..|..|+||||.|+.+| +..++++|+.+||+..   ..|. +|.||||.|+++|+..+|++|+.+|
T Consensus       323 ~rLL~~~~~rllne~D~~g~tpLHlaa~~g-H~~v~qlLl~~GA~~~~~~e~D~-dg~TaLH~Aa~~g~~~av~~Li~~G  400 (929)
T KOG0510|consen  323 ERLLQESDTRLLNESDLHGMTPLHLAAKSG-HDRVVQLLLNKGALFLNMSEADS-DGNTALHLAAKYGNTSAVQKLISHG  400 (929)
T ss_pred             HHHHhCcCccccccccccCCCchhhhhhcC-HHHHHHHHHhcChhhhccccccc-CCchhhhHHHHhccHHHHHHHHHcC
Confidence            99999 44 468999999999999999877 8999999999999887   4566 9999999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHH
Q psy3899         704 SSLEIPNAQGLTPFML  719 (923)
Q Consensus       704 ad~~~~d~~g~tpl~~  719 (923)
                      |++..+|++|.+++++
T Consensus       401 a~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  401 ADIGVKNKKGKSAFDT  416 (929)
T ss_pred             Cceeeccccccccccc
Confidence            9999999999999995

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.4e-47  Score=425.37  Aligned_cols=198  Identities=14%  Similarity=0.125  Sum_probs=167.7

Q ss_pred             ChhhHHHHHHhcCCCCCCCCCCCcHhHH--HHHcCcHHHHHHHHh--------------------------------CCC
Q psy3899         524 SLSDKYQFVEAGQDVNEPDSETVTLLHW--AAINNRIEIMKYFIS--------------------------------QGA  569 (923)
Q Consensus       524 ~~~~~~~ll~~~~~~~~~~~~g~t~Lh~--A~~~g~~~~v~~Ll~--------------------------------~g~  569 (923)
                      +.+.++.|+++|+|+|.+|.+|.||||+  |...|+.|++++|++                                +|+
T Consensus       214 ~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (672)
T PHA02730        214 SKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNV  293 (672)
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCc
Confidence            3799999999999999999999999995  556678999999999                                677


Q ss_pred             cccc-------------------cCCCCCch---------------------HHHHHHHcC---CHHHHHHHHHCCCCCC
Q psy3899         570 IVDA-------------------IGGDLQAT---------------------PLHWATRQG---HLDSVVLLIQHGADPT  606 (923)
Q Consensus       570 ~~~~-------------------~~~~~g~t---------------------~Lh~A~~~g---~~~~v~~Ll~~g~~~~  606 (923)
                      |...                   ..+..|.+                     .||.=...+   +.+++++|+++|||++
T Consensus       294 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN  373 (672)
T PHA02730        294 DMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMD  373 (672)
T ss_pred             chHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCC
Confidence            7644                   01222433                     566555544   6999999999999999


Q ss_pred             CCCCCCChHHHHHHHcCc----HHHHHHHHHcCC--CCCccCCCCCcHHHH---HHHhhC--------CcchHHHHHhcC
Q psy3899         607 LMDSEGSTCIHQAAQFGH----TRIVAYLVAKGI--NVNLQDRNGMTALMW---SAYKVF--------SLDPTRLLITFG  669 (923)
Q Consensus       607 ~~d~~g~t~Lh~A~~~~~----~~~v~~Ll~~g~--~~~~~d~~g~t~Lh~---a~~~~~--------~~~~~~~Ll~~g  669 (923)
                      .. ..|.||||+|+..++    .+++++|+++|+  +++.+|..|+||||.   |...+.        ..+++++|+.+|
T Consensus       374 ~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~G  452 (672)
T PHA02730        374 KT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYM  452 (672)
T ss_pred             cC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcc
Confidence            85 799999999998875    899999999987  699999999999984   332221        124689999999


Q ss_pred             CCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHhc
Q psy3899         670 ASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA-QGLTPFMLLEEN  723 (923)
Q Consensus       670 a~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~-~g~tpl~~a~~~  723 (923)
                      ++++.+|. .|.||||+|+..++.+++++|+++||+++.+|. .|.||++.|+.+
T Consensus       453 ADINakD~-~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~  506 (672)
T PHA02730        453 DDIDMIDN-ENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYR  506 (672)
T ss_pred             cchhccCC-CCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHh
Confidence            99999998 999999999999999999999999999999997 599999999864

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.9e-46  Score=430.10  Aligned_cols=181  Identities=22%  Similarity=0.222  Sum_probs=102.0

Q ss_pred             hhHHHHHHhcCCCCCCCCCCCcHhHHHHH--------------cCcHHHHHHHHhCCCcccccCCCCCchHHHH----HH
Q psy3899         526 SDKYQFVEAGQDVNEPDSETVTLLHWAAI--------------NNRIEIMKYFISQGAIVDAIGGDLQATPLHW----AT  587 (923)
Q Consensus       526 ~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~--------------~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~----A~  587 (923)
                      +.++.|++.|++++.+|..|.||||+|+.              .++.+++++|+++|++++..+.. |+||||.    |.
T Consensus       333 eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~-G~TPLh~y~~~a~  411 (764)
T PHA02716        333 DIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCL-GYTPLTSYICTAQ  411 (764)
T ss_pred             hHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCC-CCChHHHHHHHHH
Confidence            44445555556666666666666666543              24566666666666666655433 6666662    12


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCC--------CCCChH--HHHHHHcCc------------------HHHHHHHHHcCCCCC
Q psy3899         588 RQGHLDSVVLLIQHGADPTLMD--------SEGSTC--IHQAAQFGH------------------TRIVAYLVAKGINVN  639 (923)
Q Consensus       588 ~~g~~~~v~~Ll~~g~~~~~~d--------~~g~t~--Lh~A~~~~~------------------~~~v~~Ll~~g~~~~  639 (923)
                      ..++.+++++|++.|+.....+        ..+.+|  +|.++..+.                  .+++..++..+.++|
T Consensus       412 n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN  491 (764)
T PHA02716        412 NYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNA  491 (764)
T ss_pred             hcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhcccc
Confidence            2355666666666554322111        112222  233332221                  122333344455666


Q ss_pred             ccCCCCCcHHHHHHHhhCCc-----chHHHHHhcCCCCcccccCCCChHHHHHHHcCCH-----HHHHHHHHCCCCCCCC
Q psy3899         640 LQDRNGMTALMWSAYKVFSL-----DPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH-----VAITTLVSHTSSLEIP  709 (923)
Q Consensus       640 ~~d~~g~t~Lh~a~~~~~~~-----~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~-----~~v~~Ll~~gad~~~~  709 (923)
                      ..|..|+||||+|+..| +.     +++++|++.|+|+|.+|. .|+||||+|+++|+.     ++|+.||++|++++..
T Consensus       492 ~~D~~G~TPLh~Aa~~g-~~~~v~~e~~k~LL~~GADIN~~d~-~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~~~  569 (764)
T PHA02716        492 VCETSGMTPLHVSIISH-TNANIVMDSFVYLLSIQYNINIPTK-NGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVDIV  569 (764)
T ss_pred             ccCCCCCCHHHHHHHcC-CccchhHHHHHHHHhCCCCCcccCC-CCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcchH
Confidence            67777777777777665 33     334777777777777776 777777777777754     6777777777766655

>KOG4177|consensus

Probab=100.00  E-value=1.5e-46  Score=438.12  Aligned_cols=524  Identities=21%  Similarity=0.235  Sum_probs=372.1

Q ss_pred             ccccccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCccccc
Q psy3899           2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ   81 (923)
Q Consensus         2 ~~Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~   81 (923)
                      ++|+.+|++++..... |.||||.|++.|+.++|++|+..|+.++.+|..|.||||.|+..||.+++++|+.++++.+.+
T Consensus        71 ~~ll~~~a~v~~~~~~-~~~plh~a~~~~~a~~v~~ll~~ga~~~~~~~~~lTpLh~aa~~g~~~~~~~ll~~~a~~~~k  149 (1143)
T KOG4177|consen   71 ELLLNRGAIVNATARN-GITPLHVASKRGDAEMVKLLLCRGAQIDARDRDGLTPLHCAARKGHVQVIELLLQHGAPINIK  149 (1143)
T ss_pred             hhhhccccccCccccc-CccHHHHHHhhcchhHHHHHHhccCchhhcccCCCcchhhhcccccHHHHHHHHHccCCCccc
Confidence            4566777777777655 777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCCCCcHHHHHHH-----------------------hcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHH
Q psy3899          82 DRNGMTALMWSAY-----------------------KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT  138 (923)
Q Consensus        82 d~~g~TpL~~Aa~-----------------------~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~  138 (923)
                      |++|.||+|+|++                       .+ ..+++++|++..++++..+. .|.||+|.|+..+..+++++
T Consensus       150 ~~~g~t~l~~a~~~~~~~ll~~~~~~d~l~~~~~~~~~-~~~~~~ll~~~~~~~~a~~~-~~~tpl~~a~~~nri~~~eL  227 (1143)
T KOG4177|consen  150 TKNGLSPLHMAAQVACARLLLEYKAPDYLRLHVAAHCG-HARVAKLLLDKKADPNASAL-NGFTPLHIACKKNRIKVVEL  227 (1143)
T ss_pred             ccCCCCchhhhcchhhhHHhhhcccchhhhhhHHhhcc-hHHHHhhhhcccCCcccccc-CCCCchhhhccccccceeee
Confidence            7777777766543                       12 14556666666677777776 77777777777777777777


Q ss_pred             HHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHHHHhhhhhhhhhHhhhcccchhhhhHHhhhhHHHHHHHHH
Q psy3899         139 LVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGF  218 (923)
Q Consensus       139 Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (923)
                      ++.+|+++...|..|.||+|.|+..|+.+     ++.+++.                                       
T Consensus       228 ll~~gadv~a~d~~gl~~lh~a~~~g~~~-----i~~~l~~---------------------------------------  263 (1143)
T KOG4177|consen  228 LLKHGADVSAKDESGLTPLHVAAFMGHLD-----IVKLLLQ---------------------------------------  263 (1143)
T ss_pred             eeeccCcCCcccccCccHHHHHHhccchh-----HHHHHHh---------------------------------------
Confidence            77777777777777777777777777777     7777665                                       


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhhHHHhhhhHHHhhhhhhhHHHHHhhhhhhhHHHHh
Q psy3899         219 IFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYN  298 (923)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (923)
                                            +.+....-..+..  .|.+..+......                ...+++..+...  
T Consensus       264 ----------------------~ga~~~~~~vr~~--tplh~AA~~~~~e----------------~~~~ll~~ga~~--  301 (1143)
T KOG4177|consen  264 ----------------------HGASVNVSTVRGE--TPLHMAARAGQVE----------------VCKLLLQNGADV--  301 (1143)
T ss_pred             ----------------------cccccCccccccc--Ccchhhhccchhh----------------hHhhhhccCccc--
Confidence                                  2222111111111  1222211111110                111111111110  


Q ss_pred             hhhhccCCCccccCChhhHHHHHHHHHhcCCCCCCccccccccccCCcCcCccchhhHhhccCCCCccccccccCcchhH
Q psy3899         299 FIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKY  378 (923)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  378 (923)
                               ...   ..+..+.+..+...|                                                  
T Consensus       302 ---------~~~---~~~~kt~l~~a~~~g--------------------------------------------------  319 (1143)
T KOG4177|consen  302 ---------LAK---ARDDQTPLHIASRLG--------------------------------------------------  319 (1143)
T ss_pred             ---------ccc---cccccChhhhhcccc--------------------------------------------------
Confidence                     000   000000011111100                                                  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3899         379 FVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLG  458 (923)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~q~~~i~~~~  458 (923)
                                     ...++.++....            .........+.+++.++...++......+..         +
T Consensus       320 ---------------~~~i~~~~l~~~------------~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~---------~  363 (1143)
T KOG4177|consen  320 ---------------HEEIVHLLLQAG------------ATPNAARTAGYTPLHLAAKEGQVEVAGALLE---------H  363 (1143)
T ss_pred             ---------------hHHHHHHHhhcc------------CCccccCcCCcccccHhhhhhhHHHHHHhhc---------c
Confidence                           001111111100            0011233455566666666666652222221         0


Q ss_pred             chHHHHhhhccccccccCCCCCCCCccccccccccccccccccccC--CCcchhhhhHhhcccCCCCChhhHHHHHHhcC
Q psy3899         459 MTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGL--FKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQ  536 (923)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~  536 (923)
                            ....      ......+.||+|.|+..+..+.+..+...=  .+......++.+..+.+......++.+++.|+
T Consensus       364 ------~~~~------~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA  431 (1143)
T KOG4177|consen  364 ------GAQR------RQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGA  431 (1143)
T ss_pred             ------cccc------CcccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCC
Confidence                  0000      011456889999999999988877655221  23444556777888888888999999999999


Q ss_pred             CCCCCCCCCCcHhHHHHHcC-cHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChH
Q psy3899         537 DVNEPDSETVTLLHWAAINN-RIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTC  615 (923)
Q Consensus       537 ~~~~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~  615 (923)
                      +++..+..|+||+|+|+..| ..+....+++.|.+++..... |.||||.|+..|+.++++.|++.++..+.....|.++
T Consensus       432 ~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~-G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~  510 (1143)
T KOG4177|consen  432 SPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQ-GFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTP  510 (1143)
T ss_pred             ChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccc-cCcchhhhhccCCchHHHHhhhcCCccCccchhccch
Confidence            99999999999999999999 899999999999999988766 9999999999999999999999999999989999999


Q ss_pred             HHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHH
Q psy3899         616 IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVA  695 (923)
Q Consensus       616 Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~  695 (923)
                      +|.|...+...+++.++++|++++.++..|.||||.|+.+| +.++|++|+++|+|++.+|+ .|+||||.|+..|+.+|
T Consensus       511 lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g-~v~~VkfLLe~gAdv~ak~~-~G~TPLH~Aa~~G~~~i  588 (1143)
T KOG4177|consen  511 LHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYG-NVDLVKFLLEHGADVNAKDK-LGYTPLHQAAQQGHNDI  588 (1143)
T ss_pred             hhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcC-CchHHHHhhhCCccccccCC-CCCChhhHHHHcChHHH
Confidence            99999999999999999999999999999999999999999 99999999999999999997 99999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHhccCCC
Q psy3899         696 ITTLVSHTSSLEIPNAQGLTPFMLLEENIGAP  727 (923)
Q Consensus       696 v~~Ll~~gad~~~~d~~g~tpl~~a~~~~~~~  727 (923)
                      +.+|+++|+++|..|.+|.|||+.|.+.+...
T Consensus       589 ~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~  620 (1143)
T KOG4177|consen  589 AELLLKHGASVNAADLDGFTPLHIAVRLGYLS  620 (1143)
T ss_pred             HHHHHHcCCCCCcccccCcchhHHHHHhcccc
Confidence            99999999999999999999999999986543

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.2e-45  Score=423.75  Aligned_cols=172  Identities=16%  Similarity=0.129  Sum_probs=145.8

Q ss_pred             CccccccCcccccccCCCCccHHHHHHHcCCHH----HHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCC
Q psy3899           1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLD----SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI   76 (923)
Q Consensus         1 v~~Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~----~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga   76 (923)
                      |++|++.|+|++.++.. |.||||+|+..|+.+    +|+.|++.+...+..+  ..+++|.|+.+|+.++|++|+++|+
T Consensus        51 v~~Ll~~ga~v~~~~~~-g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Ga  127 (661)
T PHA02917         51 VKLLLDSGTNPLHKNWR-QLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIND--FNIFSYMKSKNVDVDLIKVLVEHGF  127 (661)
T ss_pred             HHHHHHCCCCccccCCC-CCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCC--cchHHHHHhhcCCHHHHHHHHHcCC
Confidence            57899999999998766 999999999999954    5688888754455543  3478899999999999999999999


Q ss_pred             cccccCCCCCcHHHHHHH--hcCCCchhHHHHhcCCCccccccc--CC-----------CcHHHHHHH-----------h
Q psy3899          77 NVNLQDRNGMTALMWSAY--KVFSLDPTRLLITFGASTTIQDKI--HG-----------NVALHWAIY-----------A  130 (923)
Q Consensus        77 ~vn~~d~~g~TpL~~Aa~--~g~~~~vv~lLl~~ga~~~~~d~~--~g-----------~T~L~~A~~-----------~  130 (923)
                      ++|.+|.+|+||||.|+.  .| +.+++++|+++|++++.+|..  .|           .||||+|+.           .
T Consensus       128 din~~d~~g~T~L~~~~a~~~~-~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~  206 (661)
T PHA02917        128 DLSVKCENHRSVIENYVMTDDP-VPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAY  206 (661)
T ss_pred             CCCccCCCCccHHHHHHHccCC-CHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhccccccccccc
Confidence            999999999999996543  45 599999999999999876531  23           599999986           4


Q ss_pred             CcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899         131 KNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  179 (923)
Q Consensus       131 g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~  179 (923)
                      |+.++|++|+++|+|++.+|..|.||||+|+.+|+.+   .++|++|++
T Consensus       207 ~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~---~eivk~Li~  252 (661)
T PHA02917        207 VRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHID---IDIVKLLMK  252 (661)
T ss_pred             CcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCc---HHHHHHHHh
Confidence            6899999999999999999999999999999999863   127777754

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-44  Score=407.35  Aligned_cols=157  Identities=18%  Similarity=0.246  Sum_probs=133.9

Q ss_pred             HhHHHHHcC---cHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCC----HHHHHHHHHCCC--CCCCCCCCCChHHHH
Q psy3899         548 LLHWAAINN---RIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH----LDSVVLLIQHGA--DPTLMDSEGSTCIHQ  618 (923)
Q Consensus       548 ~Lh~A~~~g---~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~----~~~v~~Ll~~g~--~~~~~d~~g~t~Lh~  618 (923)
                      .||.-...+   +.+++++|+++|++++..  ..|.||||+|+..++    .+++++|+++|+  +++.+|..|.||||.
T Consensus       346 ~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k--~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~  423 (672)
T PHA02730        346 MLINYLHYGDMVSIPILRCMLDNGATMDKT--TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYG  423 (672)
T ss_pred             HHHHHHhcCCcCcHHHHHHHHHCCCCCCcC--CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhH
Confidence            567666655   589999999999999974  459999999988875    899999999998  688899999999984


Q ss_pred             ---HHHcC---------cHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHH
Q psy3899         619 ---AAQFG---------HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW  686 (923)
Q Consensus       619 ---A~~~~---------~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~  686 (923)
                         |...+         ..+++++|+++|+++|.+|..|.||||+|+..+ +.+++++|+++|++++.+|...|.||||+
T Consensus       424 ~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~-~~eive~LI~~GAdIN~~d~~~g~TaL~~  502 (672)
T PHA02730        424 LILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVN-NIQFARRLLEYGASVNTTSRSIINTAIQK  502 (672)
T ss_pred             HHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhC-CHHHHHHHHHCCCCCCCCCCcCCcCHHHH
Confidence               33222         235799999999999999999999999999887 88999999999999999996359999999


Q ss_pred             HHHc--CCHHHHHHHHHCCCCCC
Q psy3899         687 AIYA--KNHVAITTLVSHTSSLE  707 (923)
Q Consensus       687 A~~~--~~~~~v~~Ll~~gad~~  707 (923)
                      |+..  ++.+++++|+++|++++
T Consensus       503 Aa~~~~~~~eIv~~LLs~ga~i~  525 (672)
T PHA02730        503 SSYRRENKTKLVDLLLSYHPTLE  525 (672)
T ss_pred             HHHhhcCcHHHHHHHHHcCCCHH
Confidence            9974  78999999999998663

>KOG0510|consensus

Probab=100.00  E-value=2e-44  Score=393.36  Aligned_cols=167  Identities=27%  Similarity=0.340  Sum_probs=156.5

Q ss_pred             cccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCC
Q psy3899           5 ISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN   84 (923)
Q Consensus         5 i~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~   84 (923)
                      ++.-+..++.|.. |+||||+|+.....+.|+.|++.|++++..|.++.+|+|+|+..|+.++.+.|+++|+|+|..|..
T Consensus        75 ~~~~~~~~a~D~~-~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~  153 (929)
T KOG0510|consen   75 LSKLAISYAKDSA-DNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDEN  153 (929)
T ss_pred             hhhhhhhhhhhcc-cCchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhcCCccccccC
Confidence            3455667787766 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHh-----cCCCCCCCCCCCCChHHH
Q psy3899          85 GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVS-----HTSSLEIPNAQGLTPFML  159 (923)
Q Consensus        85 g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~-----~ga~~~~~~~~g~t~L~~  159 (923)
                      |.||||+||.+++ .+..+.|++.|+++...|. +|++|+|.|+.+|..++.+..+.     ++..+|.-|..|.||||.
T Consensus       154 ~~TpLh~A~~~~~-~E~~k~Li~~~a~~~K~~~-~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhl  231 (929)
T KOG0510|consen  154 GFTPLHLAARKNK-VEAKKELINKGADPCKSDI-DGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHL  231 (929)
T ss_pred             CCchhhHHHhcCh-HHHHHHHHhcCCCCCcccC-cCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhh
Confidence            9999999999995 7799999999999999999 99999999999999999999998     567899999999999999


Q ss_pred             HHhhcCCCCCchhhhhHHHH
Q psy3899         160 LEENIGAPWLGKATVDKITE  179 (923)
Q Consensus       160 A~~~g~~~~~~~~~v~~L~~  179 (923)
                      |.+.|+.+     .++..++
T Consensus       232 Ave~g~~e-----~lk~~L~  246 (929)
T KOG0510|consen  232 AVEGGDIE-----MLKMCLQ  246 (929)
T ss_pred             hhhcCCHH-----HHHHHHh
Confidence            99999999     8877776

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.3e-43  Score=408.14  Aligned_cols=200  Identities=24%  Similarity=0.260  Sum_probs=163.0

Q ss_pred             hhhHHHHHHhcCCCCCCCCCCCcHhHHHHH--cCcHHHHHHHHhCCCcccccCCCCCchHHHHHHH--------------
Q psy3899         525 LSDKYQFVEAGQDVNEPDSETVTLLHWAAI--NNRIEIMKYFISQGAIVDAIGGDLQATPLHWATR--------------  588 (923)
Q Consensus       525 ~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~--------------  588 (923)
                      .+.++.|++.|++++.+|..|.||||+|+.  .++.+++++|+++|++++..+.. |+||||+|+.              
T Consensus       297 leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~-G~TPLH~A~~~lav~~~ld~~~~~  375 (764)
T PHA02716        297 ISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNI-GNTVLHTYLSMLSVVNILDPETDN  375 (764)
T ss_pred             HHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCC-CCCHHHHHHHhhhhhccccccccc
Confidence            688889999999999999999999999875  46899999999999999987654 9999999875              


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCChHHHH----HHHcCcHHHHHHHHHcCCCCCccC--------CCCCcH--HHHHHH
Q psy3899         589 QGHLDSVVLLIQHGADPTLMDSEGSTCIHQ----AAQFGHTRIVAYLVAKGINVNLQD--------RNGMTA--LMWSAY  654 (923)
Q Consensus       589 ~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~----A~~~~~~~~v~~Ll~~g~~~~~~d--------~~g~t~--Lh~a~~  654 (923)
                      .++.+++++|+++|+|++.+|..|.||||.    |...++.+++++|++.|+.....+        ..+.+|  +|.++.
T Consensus       376 ~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a  455 (764)
T PHA02716        376 DIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIA  455 (764)
T ss_pred             cChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHH
Confidence            378999999999999999999999999994    234578999999999876543222        223333  444554


Q ss_pred             hhC-----------------CcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHH-----HHHHHHHCCCCCCCCCCC
Q psy3899         655 KVF-----------------SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV-----AITTLVSHTSSLEIPNAQ  712 (923)
Q Consensus       655 ~~~-----------------~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~-----~v~~Ll~~gad~~~~d~~  712 (923)
                      .+.                 ..++...++..+.+++..|. .|+||||+|+..|+.+     ++++|+++|+|++.+|++
T Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~-~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~  534 (764)
T PHA02716        456 KYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCET-SGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKN  534 (764)
T ss_pred             hcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCC-CCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCC
Confidence            331                 12334455566788899998 9999999999999874     559999999999999999


Q ss_pred             CCCHHHHHHhccCC
Q psy3899         713 GLTPFMLLEENIGA  726 (923)
Q Consensus       713 g~tpl~~a~~~~~~  726 (923)
                      |+|||++|.+++..
T Consensus       535 G~TPLh~A~~~g~~  548 (764)
T PHA02716        535 GVTPLMLTMRNNRL  548 (764)
T ss_pred             CCCHHHHHHHcCCc
Confidence            99999999998753

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-42  Score=395.82  Aligned_cols=328  Identities=21%  Similarity=0.264  Sum_probs=289.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCC
Q psy3899          21 TPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSL   99 (923)
Q Consensus        21 T~Lh~Aa~~g~~~~V~~Ll~~-ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~   99 (923)
                      ..|..|+..|+.+.|+.|++. +..++..+.+|.||||.|+..|+.++|++|+++|+++|..+..|.||||.|+..|+ .
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~-~   81 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGA-H   81 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC-H
Confidence            468999999999999999976 66688899999999999999999999999999999999999999999999999994 9


Q ss_pred             chhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899         100 DPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  179 (923)
Q Consensus       100 ~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~  179 (923)
                      +++++|+++|+++...           +....+.++++.|++.|++++.+|..|.||||+|+..|+.+     ++++|  
T Consensus        82 ~iv~~Ll~~g~~~~~~-----------~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~-----~v~~L--  143 (434)
T PHA02874         82 DIIKLLIDNGVDTSIL-----------PIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLE-----SIKML--  143 (434)
T ss_pred             HHHHHHHHCCCCCCcc-----------hhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHH-----HHHHH--
Confidence            9999999999887532           23345789999999999999999999999999999887666     44433  


Q ss_pred             HHhhhhhhhhhHhhhcccchhhhhHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhccccccccccchh
Q psy3899         180 LKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLP  259 (923)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (923)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (434)
T PHA02874        144 --------------------------------------------------------------------------------  143 (434)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhHHHhhhhHHHhhhhhhhHHHHHhhhhhhhHHHHhhhhhccCCCccccCChhhHHHHHHHHHhcCCCCCCcccccc
Q psy3899         260 VYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTC  339 (923)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  339 (923)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (434)
T PHA02874        144 --------------------------------------------------------------------------------  143 (434)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcCcCccchhhHhhccCCCCccccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHH
Q psy3899         340 LVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVV  419 (923)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~l  419 (923)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (434)
T PHA02874        144 --------------------------------------------------------------------------------  143 (434)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhccccccccCCCCCCCCcccccccccccccccc
Q psy3899         420 WDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGW  499 (923)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  499 (923)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (434)
T PHA02874        144 --------------------------------------------------------------------------------  143 (434)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCC
Q psy3899         500 SCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQ  579 (923)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g  579 (923)
                                                      ++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+.. |
T Consensus       144 --------------------------------l~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~-g  190 (434)
T PHA02874        144 --------------------------------FEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNN-G  190 (434)
T ss_pred             --------------------------------HhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCC-C
Confidence                                            3445677778889999999999999999999999999999876544 9


Q ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCc
Q psy3899         580 ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSL  659 (923)
Q Consensus       580 ~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~  659 (923)
                      .||||+|+..|+.+++++|+++|++++.++..|.||||.|+..+. +.+++|+ .|++++.+|..|+||||+|+..+++.
T Consensus       191 ~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~  268 (434)
T PHA02874        191 ESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDI  268 (434)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcH
Confidence            999999999999999999999999999999999999999999875 5666666 68999999999999999999887688


Q ss_pred             chHHHHHhcCCCCcccccCCCChHHHHHHHcC-CHHHHHHHHHCCCCCCCCCCCC-CCHHHHHHhc
Q psy3899         660 DPTRLLITFGASTTIQDKIHGNVALHWAIYAK-NHVAITTLVSHTSSLEIPNAQG-LTPFMLLEEN  723 (923)
Q Consensus       660 ~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~-~~~~v~~Ll~~gad~~~~d~~g-~tpl~~a~~~  723 (923)
                      +++++|+..|++++.+|. .|.||||+|+..+ ..++++.|+++++.++..+..+ .+++..+...
T Consensus       269 ~iv~~Ll~~gad~n~~d~-~g~TpL~~A~~~~~~~~~ik~ll~~~~~~~~~~~~~~~~~~~~~~i~  333 (434)
T PHA02874        269 DIIDILLYHKADISIKDN-KGENPIDTAFKYINKDPVIKDIIANAVLIKEADKLKDSDFLEHIEIK  333 (434)
T ss_pred             HHHHHHHHCcCCCCCCCC-CCCCHHHHHHHhCCccHHHHHHHHhcCchhhccccchhHHHHHHHHh
Confidence            999999999999999998 9999999999987 6788999999998776666555 4556555443

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.3e-42  Score=400.10  Aligned_cols=294  Identities=26%  Similarity=0.314  Sum_probs=256.6

Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhC---cHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCc
Q psy3899          24 HWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG---HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLD  100 (923)
Q Consensus        24 h~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g---~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~  100 (923)
                      ..|+..++.++|+.|+++|++++.++..|.||||+|+..|   +.+++++|+++|+++|.+|..|.||||+|+..|+..+
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~   98 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLD   98 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHH
Confidence            6678889999999999999999999999999999999999   9999999999999999999999999999999995599


Q ss_pred             hhHHHHhcCCCcccccccCCCcHHHHHH--HhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHH
Q psy3899         101 PTRLLITFGASTTIQDKIHGNVALHWAI--YAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKIT  178 (923)
Q Consensus       101 vv~lLl~~ga~~~~~d~~~g~T~L~~A~--~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~  178 (923)
                      ++++|+++|++++.+|. .|.||||+|+  ..++.+++++|+++|++++..|..|.||||+|+..++..           
T Consensus        99 iv~lLl~~ga~in~~~~-~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~-----------  166 (471)
T PHA03095         99 VIKLLIKAGADVNAKDK-VGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNAN-----------  166 (471)
T ss_pred             HHHHHHHcCCCCCCCCC-CCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCC-----------
Confidence            99999999999999998 9999999999  567899999999999999999999999999988665222           


Q ss_pred             HHHhhhhhhhhhHhhhcccchhhhhHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhccccccccccch
Q psy3899         179 ELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPL  258 (923)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (923)
                                                                                                      
T Consensus       167 --------------------------------------------------------------------------------  166 (471)
T PHA03095        167 --------------------------------------------------------------------------------  166 (471)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhHHHhhhhHHHhhhhhhhHHHHHhhhhhhhHHHHhhhhhccCCCccccCChhhHHHHHHHHHhcCCCCCCccccc
Q psy3899         259 PVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCST  338 (923)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  338 (923)
                                                                                                      
T Consensus       167 --------------------------------------------------------------------------------  166 (471)
T PHA03095        167 --------------------------------------------------------------------------------  166 (471)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCcCcCccchhhHhhccCCCCccccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHH
Q psy3899         339 CLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFV  418 (923)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~  418 (923)
                                                                                                      
T Consensus       167 --------------------------------------------------------------------------------  166 (471)
T PHA03095        167 --------------------------------------------------------------------------------  166 (471)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhccccccccCCCCCCCCccccccccccccccc
Q psy3899         419 VWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTG  498 (923)
Q Consensus       419 l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  498 (923)
                                                                                                      
T Consensus       167 --------------------------------------------------------------------------------  166 (471)
T PHA03095        167 --------------------------------------------------------------------------------  166 (471)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHc--CcHHHHHHHHhCCCcccccCC
Q psy3899         499 WSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAIN--NRIEIMKYFISQGAIVDAIGG  576 (923)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~--g~~~~v~~Ll~~g~~~~~~~~  576 (923)
                                                .+.++.|++.|++++..|..|.||||+|+..  ++.++++.|++.|++++..+.
T Consensus       167 --------------------------~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~  220 (471)
T PHA03095        167 --------------------------VELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDM  220 (471)
T ss_pred             --------------------------HHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCC
Confidence                                      2334455566677777778888888888865  678888888888888887655


Q ss_pred             CCCchHHHHHHHcCCH--HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHH
Q psy3899         577 DLQATPLHWATRQGHL--DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY  654 (923)
Q Consensus       577 ~~g~t~Lh~A~~~g~~--~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~  654 (923)
                      . |.||||+|+..|+.  .+++.|+++|++++.+|..|.||||+|+..|+.+++++|++.|+|++.+|..|.||||+|+.
T Consensus       221 ~-g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~  299 (471)
T PHA03095        221 L-GNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVR  299 (471)
T ss_pred             C-CCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            4 88888888888864  57788888888888888888888888888888888888888888888888888888888888


Q ss_pred             hhCCcchHHHHHhcCCCCccccc
Q psy3899         655 KVFSLDPTRLLITFGASTTIQDK  677 (923)
Q Consensus       655 ~~~~~~~~~~Ll~~ga~~~~~d~  677 (923)
                      .+ +.++++.|+..+++++..+.
T Consensus       300 ~~-~~~~v~~LL~~~~~~~~~~~  321 (471)
T PHA03095        300 NN-NGRAVRAALAKNPSAETVAA  321 (471)
T ss_pred             hC-CHHHHHHHHHhCCCHHHHHH
Confidence            87 78888888888888876655

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2e-42  Score=400.66  Aligned_cols=313  Identities=21%  Similarity=0.192  Sum_probs=269.7

Q ss_pred             CccccccCcccccccCCCCccHHHHHHHcC---CHHHHHHHHHcCCCCCccCCCCChHHHHHHHhC-cHHHHHHHHHCCC
Q psy3899           1 MKYFISQGAIVDAIGGDLQATPLHWATRQG---HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG-HTRIVAYLVAKGI   76 (923)
Q Consensus         1 v~~Li~~g~~~n~~~~~~g~T~Lh~Aa~~g---~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g-~~~iv~~Ll~~ga   76 (923)
                      |++|+++|+++|..+.. |.||||+|+..|   +.++|++|++.|+++|.+|..|+||||+|+..| +.+++++|+++|+
T Consensus        30 v~~Ll~~ga~vn~~~~~-g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga  108 (471)
T PHA03095         30 VRRLLAAGADVNFRGEY-GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGA  108 (471)
T ss_pred             HHHHHHcCCCcccCCCC-CCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCC
Confidence            57899999999998766 999999999999   999999999999999999999999999999999 5999999999999


Q ss_pred             cccccCCCCCcHHHHHHHhc-CCCchhHHHHhcCCCcccccccCCCcHHHHHHHhC--cHHHHHHHHhcCCCCCCCCCCC
Q psy3899          77 NVNLQDRNGMTALMWSAYKV-FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAK--NHVAITTLVSHTSSLEIPNAQG  153 (923)
Q Consensus        77 ~vn~~d~~g~TpL~~Aa~~g-~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g--~~~iv~~Ll~~ga~~~~~~~~g  153 (923)
                      ++|.+|..|.||||+|+..+ .+.+++++|++.|++++..|. .|.||||+|+..+  +.+++++|+++|++++..|..|
T Consensus       109 ~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~-~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g  187 (471)
T PHA03095        109 DVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDL-YGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRF  187 (471)
T ss_pred             CCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCC
Confidence            99999999999999999432 147899999999999999999 9999999999876  6899999999999999999999


Q ss_pred             CChHHHHHhhcCCCCCchhhhhHHHHHHhhhhhhhhhHhhhcccchhhhhHHhhhhHHHHHHHHHHhhhhHHHHHHHHHH
Q psy3899         154 LTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALF  233 (923)
Q Consensus       154 ~t~L~~A~~~g~~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (923)
                      .||||+|+......                                                                  
T Consensus       188 ~t~Lh~~~~~~~~~------------------------------------------------------------------  201 (471)
T PHA03095        188 RSLLHHHLQSFKPR------------------------------------------------------------------  201 (471)
T ss_pred             CCHHHHHHHHCCCc------------------------------------------------------------------
Confidence            99999988653222                                                                  


Q ss_pred             HHHHHHHHHhhhhccccccccccchhhhhhhHHHhhhhHHHhhhhhhhHHHHHhhhhhhhHHHHhhhhhccCCCccccCC
Q psy3899         234 ISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAP  313 (923)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (923)
                                                                                                      
T Consensus       202 --------------------------------------------------------------------------------  201 (471)
T PHA03095        202 --------------------------------------------------------------------------------  201 (471)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhHHHHHHHHHhcCCCCCCccccccccccCCcCcCccchhhHhhccCCCCccccccccCcchhHHHHHHHHHHHHHHHH
Q psy3899         314 QDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFV  393 (923)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (923)
                                                                                                      
T Consensus       202 --------------------------------------------------------------------------------  201 (471)
T PHA03095        202 --------------------------------------------------------------------------------  201 (471)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHhhhccccccchhhHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhcccccc
Q psy3899         394 LYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHF  473 (923)
Q Consensus       394 ~~~~~~yl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~q~~~i~~~~~~~~~~~~~~~~~~~  473 (923)
                                                                                                      
T Consensus       202 --------------------------------------------------------------------------------  201 (471)
T PHA03095        202 --------------------------------------------------------------------------------  201 (471)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHH
Q psy3899         474 IANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAA  553 (923)
Q Consensus       474 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~  553 (923)
                                                                         .+.++.+++.|++++.+|..|.||||+|+
T Consensus       202 ---------------------------------------------------~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa  230 (471)
T PHA03095        202 ---------------------------------------------------ARIVRELIRAGCDPAATDMLGNTPLHSMA  230 (471)
T ss_pred             ---------------------------------------------------HHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence                                                               23344566778899999999999999999


Q ss_pred             HcCcH--HHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHH
Q psy3899         554 INNRI--EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL  631 (923)
Q Consensus       554 ~~g~~--~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  631 (923)
                      ..|+.  .+++.|++.|++++..+ ..|+||||+|+..|+.+++++|+++|+|++.+|..|.||||+|++.|+.++++.|
T Consensus       231 ~~~~~~~~~v~~ll~~g~din~~d-~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~L  309 (471)
T PHA03095        231 TGSSCKRSLVLPLLIAGISINARN-RYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAA  309 (471)
T ss_pred             hcCCchHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHH
Confidence            99974  68899999999999877 4599999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCccCCCCCcHHHHH---HHhhCCcchHHHHHhcCCCCc
Q psy3899         632 VAKGINVNLQDRNGMTALMWS---AYKVFSLDPTRLLITFGASTT  673 (923)
Q Consensus       632 l~~g~~~~~~d~~g~t~Lh~a---~~~~~~~~~~~~Ll~~ga~~~  673 (923)
                      ++.+++++..+....+...++   ........+.++++..|+++.
T Consensus       310 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  354 (471)
T PHA03095        310 LAKNPSAETVAATLNTASVAGGDIPSDATRLCVAKVVLRGAFSLL  354 (471)
T ss_pred             HHhCCCHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHhcchhhc
Confidence            999999876655444443333   111212334555555566653

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.2e-41  Score=381.75  Aligned_cols=328  Identities=21%  Similarity=0.246  Sum_probs=284.0

Q ss_pred             ccccc-cCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccc
Q psy3899           2 KYFIS-QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL   80 (923)
Q Consensus         2 ~~Li~-~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~   80 (923)
                      +.|++ .|.++|..+.+ |.||||.|+..|+.++|++|++.|++++..+..|.||||.|+..|+.+++++|+++|++++.
T Consensus        18 ~~ll~~~~~~~n~~~~~-~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~   96 (434)
T PHA02874         18 EKIIKNKGNCINISVDE-TTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSI   96 (434)
T ss_pred             HHHHHcCCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence            45664 56678887666 99999999999999999999999999999999999999999999999999999999998754


Q ss_pred             cCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHH
Q psy3899          81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLL  160 (923)
Q Consensus        81 ~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A  160 (923)
                      .          +.... +.++++.|++.|++++.+|. .|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|
T Consensus        97 ~----------~~~~~-~~~~i~~ll~~g~d~n~~~~-~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A  164 (434)
T PHA02874         97 L----------PIPCI-EKDMIKTILDCGIDVNIKDA-ELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIA  164 (434)
T ss_pred             c----------hhccC-CHHHHHHHHHCcCCCCCCCC-CCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHH
Confidence            2          12223 47899999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCchhhhhHHHHHHhhhhhhhhhHhhhcccchhhhhHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy3899         161 EENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVM  240 (923)
Q Consensus       161 ~~~g~~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (923)
                      +..|+.+     ++++|+                                                              
T Consensus       165 ~~~~~~~-----iv~~Ll--------------------------------------------------------------  177 (434)
T PHA02874        165 IKHNFFD-----IIKLLL--------------------------------------------------------------  177 (434)
T ss_pred             HHCCcHH-----HHHHHH--------------------------------------------------------------
Confidence            9887666     444443                                                              


Q ss_pred             HHhhhhccccccccccchhhhhhhHHHhhhhHHHhhhhhhhHHHHHhhhhhhhHHHHhhhhhccCCCccccCChhhHHHH
Q psy3899         241 QVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRY  320 (923)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (923)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (434)
T PHA02874        178 --------------------------------------------------------------------------------  177 (434)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhcCCCCCCccccccccccCCcCcCccchhhHhhccCCCCccccccccCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3899         321 IIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKY  400 (923)
Q Consensus       321 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  400 (923)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (434)
T PHA02874        178 --------------------------------------------------------------------------------  177 (434)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhccccccchhhHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhccccccccCCCCC
Q psy3899         401 WKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQ  480 (923)
Q Consensus       401 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (923)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (434)
T PHA02874        178 --------------------------------------------------------------------------------  177 (434)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCcHHH
Q psy3899         481 FISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEI  560 (923)
Q Consensus       481 ~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~  560 (923)
                                                                          +.|++++..+..|.||||+|+..|+.++
T Consensus       178 ----------------------------------------------------~~g~~~n~~~~~g~tpL~~A~~~g~~~i  205 (434)
T PHA02874        178 ----------------------------------------------------EKGAYANVKDNNGESPLHNAAEYGDYAC  205 (434)
T ss_pred             ----------------------------------------------------HCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence                                                                3445666778889999999999999999


Q ss_pred             HHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC-cHHHHHHHHHcCCCCC
Q psy3899         561 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG-HTRIVAYLVAKGINVN  639 (923)
Q Consensus       561 v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~-~~~~v~~Ll~~g~~~~  639 (923)
                      +++|++.|++++..... |.||||+|+..++ +.+++|+ .|++++.+|..|.||||+|++.+ +.+++++|+++|++++
T Consensus       206 v~~Ll~~g~~i~~~~~~-g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n  282 (434)
T PHA02874        206 IKLLIDHGNHIMNKCKN-GFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADIS  282 (434)
T ss_pred             HHHHHhCCCCCcCCCCC-CCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCC
Confidence            99999999999876554 9999999999876 5666666 68999999999999999999876 7899999999999999


Q ss_pred             ccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCC
Q psy3899         640 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS  704 (923)
Q Consensus       640 ~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~ga  704 (923)
                      .+|..|.||||+|+..+...++++.|+..++.++..+...+.+++..+...++.+..+++.+...
T Consensus       283 ~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~c~~  347 (434)
T PHA02874        283 IKDNKGENPIDTAFKYINKDPVIKDIIANAVLIKEADKLKDSDFLEHIEIKDNKEFSDFIKECNE  347 (434)
T ss_pred             CCCCCCCCHHHHHHHhCCccHHHHHHHHhcCchhhccccchhHHHHHHHHhccchHHHHHHHHHH
Confidence            99999999999999887677889999999988877766445777888887777777666665443

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.1e-39  Score=374.63  Aligned_cols=133  Identities=18%  Similarity=0.248  Sum_probs=113.3

Q ss_pred             CCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHH-----HHHhcCCCchhHH
Q psy3899          30 GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW-----SAYKVFSLDPTRL  104 (923)
Q Consensus        30 g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~-----Aa~~g~~~~vv~l  104 (923)
                      ...++++.+++.+-..+..+..|.||||+|+..|+.++|++|+++|++++..+..|.||||+     |+..| +.+++++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~-~~~iv~~   91 (480)
T PHA03100         13 IKVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTD-VKEIVKL   91 (480)
T ss_pred             HHHHHHHHHHhcCccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhc-hHHHHHH
Confidence            34577888887776666678888899999999999999999999898888888888899998     88888 4888888


Q ss_pred             HHhcCCCcccccccCCCcHHHHHH--HhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhc
Q psy3899         105 LITFGASTTIQDKIHGNVALHWAI--YAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI  164 (923)
Q Consensus       105 Ll~~ga~~~~~d~~~g~T~L~~A~--~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g  164 (923)
                      |+++|++++..|. .|.||||+|+  ..|+.++|++|+++|++++..+..|.||||+|+..|
T Consensus        92 Ll~~ga~i~~~d~-~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  152 (480)
T PHA03100         92 LLEYGANVNAPDN-NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESN  152 (480)
T ss_pred             HHHCCCCCCCCCC-CCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC
Confidence            8888888888887 8889999998  888889999999888888888888888888888765

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.9e-39  Score=376.41  Aligned_cols=170  Identities=25%  Similarity=0.339  Sum_probs=156.6

Q ss_pred             ccccccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHH-----HHHhCcHHHHHHHHHCCC
Q psy3899           2 KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ-----AAQFGHTRIVAYLVAKGI   76 (923)
Q Consensus         2 ~~Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~-----Aa~~g~~~iv~~Ll~~ga   76 (923)
                      +++++.+-..+..+ ..|.||||.|+..|+.++|+.|+++|++++..+..|.||||+     |+..|+.+++++|+++|+
T Consensus        19 ~~~~~~~~~~~~~~-~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga   97 (480)
T PHA03100         19 KYIIMEDDLNDYSY-KKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGA   97 (480)
T ss_pred             HHHHhcCccchhhh-cccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCC
Confidence            45666664455544 459999999999999999999999999999999999999999     999999999999999999


Q ss_pred             cccccCCCCCcHHHHHH--HhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhC--cHHHHHHHHhcCCCCCCCCCC
Q psy3899          77 NVNLQDRNGMTALMWSA--YKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAK--NHVAITTLVSHTSSLEIPNAQ  152 (923)
Q Consensus        77 ~vn~~d~~g~TpL~~Aa--~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g--~~~iv~~Ll~~ga~~~~~~~~  152 (923)
                      +++..|..|.||||+|+  ..| +.+++++|+++|++++..+. .|.||||+|+..|  +.+++++|+++|++++.+|..
T Consensus        98 ~i~~~d~~g~tpL~~A~~~~~~-~~~iv~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~  175 (480)
T PHA03100         98 NVNAPDNNGITPLLYAISKKSN-SYSIVEYLLDNGANVNIKNS-DGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRY  175 (480)
T ss_pred             CCCCCCCCCCchhhHHHhcccC-hHHHHHHHHHcCCCCCccCC-CCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCC
Confidence            99999999999999999  888 59999999999999999998 9999999999999  999999999999999999999


Q ss_pred             CCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899         153 GLTPFMLLEENIGAPWLGKATVDKITE  179 (923)
Q Consensus       153 g~t~L~~A~~~g~~~~~~~~~v~~L~~  179 (923)
                      |.||||+|+..|+.+     ++++|++
T Consensus       176 g~tpL~~A~~~~~~~-----iv~~Ll~  197 (480)
T PHA03100        176 GYTPLHIAVEKGNID-----VIKFLLD  197 (480)
T ss_pred             CCCHHHHHHHhCCHH-----HHHHHHH
Confidence            999999999998777     6666664

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.6e-38  Score=364.42  Aligned_cols=193  Identities=25%  Similarity=0.292  Sum_probs=172.9

Q ss_pred             hhhHHHHHHhcCCCCCCCCC-CCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCC
Q psy3899         525 LSDKYQFVEAGQDVNEPDSE-TVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA  603 (923)
Q Consensus       525 ~~~~~~ll~~~~~~~~~~~~-g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~  603 (923)
                      .+.++.|++.|++++..+.. |.||||+|+.+|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|+
T Consensus       147 ~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~-g~tpLh~A~~~~~~~iv~~Ll~~ga  225 (477)
T PHA02878        147 AEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKT-NNSPLHHAVKHYNKPIVHILLENGA  225 (477)
T ss_pred             HHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCC-CCCHHHHHHHhCCHHHHHHHHHcCC
Confidence            46778889999999999999 999999999999999999999999999976655 9999999999999999999999999


Q ss_pred             CCCCCCCCCChHHHHHHHc-CcHHHHHHHHHcCCCCCccCC-CCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCC
Q psy3899         604 DPTLMDSEGSTCIHQAAQF-GHTRIVAYLVAKGINVNLQDR-NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN  681 (923)
Q Consensus       604 ~~~~~d~~g~t~Lh~A~~~-~~~~~v~~Ll~~g~~~~~~d~-~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~  681 (923)
                      +++.+|..|.||||+|+.. ++.+++++|+++|++++.++. .|.||||+|+  + +.+++++|+++|+|++.+|. .|.
T Consensus       226 ~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~--~-~~~~v~~Ll~~gadin~~d~-~g~  301 (477)
T PHA02878        226 STDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSI--K-SERKLKLLLEYGADINSLNS-YKL  301 (477)
T ss_pred             CCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHHc--c-CHHHHHHHHHCCCCCCCcCC-CCC
Confidence            9999999999999999975 789999999999999999986 7999999993  3 67899999999999999998 999


Q ss_pred             hHHHHHHHcC-CHHHHHHHHHC-----CCCCCCCCCCCCCHHHHHHh
Q psy3899         682 VALHWAIYAK-NHVAITTLVSH-----TSSLEIPNAQGLTPFMLLEE  722 (923)
Q Consensus       682 TpLh~A~~~~-~~~~v~~Ll~~-----gad~~~~d~~g~tpl~~a~~  722 (923)
                      ||||+|+..+ ..+++++|+.+     +.+++.++..|.++-.-+.+
T Consensus       302 TpL~~A~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~g~~~n~~~i~  348 (477)
T PHA02878        302 TPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNSEGFIDNMDCIT  348 (477)
T ss_pred             CHHHHHHHHcCccchHHHHHHHHHHHHhccCcccCcHHHHHHHHHHh
Confidence            9999999854 46677777655     46888899888877555444

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.6e-38  Score=360.67  Aligned_cols=132  Identities=20%  Similarity=0.246  Sum_probs=100.0

Q ss_pred             cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHh--CcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcC-----CCch
Q psy3899          29 QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQF--GHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF-----SLDP  101 (923)
Q Consensus        29 ~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~--g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~-----~~~v  101 (923)
                      ..+.++|++|+++|+++|.+ .+|.||||.++..  |+.++|++|+++||++|.++ .+.||||.|+.+++     ..++
T Consensus        13 ~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~i   90 (494)
T PHA02989         13 TVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKI   90 (494)
T ss_pred             cCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHH
Confidence            36788888888888888887 5688888765543  36788888888888888876 56888887765442     2467


Q ss_pred             hHHHHhcCCCcccccccCCCcHHHHHHHh---CcHHHHHHHHhcCCCC-CCCCCCCCChHHHHHhh
Q psy3899         102 TRLLITFGASTTIQDKIHGNVALHWAIYA---KNHVAITTLVSHTSSL-EIPNAQGLTPFMLLEEN  163 (923)
Q Consensus       102 v~lLl~~ga~~~~~d~~~g~T~L~~A~~~---g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~  163 (923)
                      +++|+++|+++|.+|. .|.||||.|+..   |+.++|++|+++|+|+ +.+|..|.||||+|+..
T Consensus        91 v~~Ll~~Gadin~~d~-~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~  155 (494)
T PHA02989         91 VKLLLKFGADINLKTF-NGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLES  155 (494)
T ss_pred             HHHHHHCCCCCCCCCC-CCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHh
Confidence            8888888888888877 788888877655   5678888888888888 67777888888877654

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-37  Score=360.17  Aligned_cols=177  Identities=17%  Similarity=0.253  Sum_probs=158.3

Q ss_pred             hhhHHHHHHhcCCC-CCCCCCCCcHhHHHHHc--CcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcC----CHHHHHH
Q psy3899         525 LSDKYQFVEAGQDV-NEPDSETVTLLHWAAIN--NRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG----HLDSVVL  597 (923)
Q Consensus       525 ~~~~~~ll~~~~~~-~~~~~~g~t~Lh~A~~~--g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g----~~~~v~~  597 (923)
                      .+.++.|+++|+|+ +.+|..|.||||+|+..  ++.+++++|+++|++++...+..|.||||+|++.+    +.+++++
T Consensus       124 ~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~  203 (494)
T PHA02989        124 CDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKY  203 (494)
T ss_pred             HHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHH
Confidence            45666778889999 78999999999999865  68999999999999998755566999999998764    8999999


Q ss_pred             HHHCCCCCCCCCCCCChHHHHHHHcC------cHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCC
Q psy3899         598 LIQHGADPTLMDSEGSTCIHQAAQFG------HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS  671 (923)
Q Consensus       598 Ll~~g~~~~~~d~~g~t~Lh~A~~~~------~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~  671 (923)
                      |+++|++++.+|..|.||||.++..+      ..+++++|++ |+++|.+|..|+||||+|+..+ +.+++++|++.|+|
T Consensus       204 Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~advn~~d~~G~TpL~~Aa~~~-~~~~v~~LL~~Gad  281 (494)
T PHA02989        204 LIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIKINKKDKKGFNPLLISAKVD-NYEAFNYLLKLGDD  281 (494)
T ss_pred             HHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCCCCCCCCCCCCHHHHHHHhc-CHHHHHHHHHcCCC
Confidence            99999999999999999999887643      4667776655 6999999999999999999888 89999999999999


Q ss_pred             CcccccCCCChHHHHHHHcCCHHHHHHHHHCCC
Q psy3899         672 TTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS  704 (923)
Q Consensus       672 ~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~ga  704 (923)
                      ++.+|. .|+||||+|+..|+.++|+.|++.++
T Consensus       282 in~~d~-~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        282 IYNVSK-DGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             ccccCC-CCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            999998 99999999999999999999999875

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-37  Score=359.41  Aligned_cols=156  Identities=24%  Similarity=0.326  Sum_probs=134.1

Q ss_pred             HHHHhcCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHc-CCHHHHHHHHHCCCCCCCC
Q psy3899         530 QFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ-GHLDSVVLLIQHGADPTLM  608 (923)
Q Consensus       530 ~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~-g~~~~v~~Ll~~g~~~~~~  608 (923)
                      .|++.|++++.+|..|.||||+|+..|+.+++++|++.|++++..+.. |.||||+|+.. ++.+++++|+++|++++.+
T Consensus       186 ~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~-g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~  264 (477)
T PHA02878        186 LLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKC-GNTPLHISVGYCKDYDILKLLLEHGVDVNAK  264 (477)
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCC-CCCHHHHHHHhcCCHHHHHHHHHcCCCCCcc
Confidence            344556678888999999999999999999999999999999987654 99999999975 7999999999999999998


Q ss_pred             CC-CCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhc-----CCCCcccccCCCCh
Q psy3899         609 DS-EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF-----GASTTIQDKIHGNV  682 (923)
Q Consensus       609 d~-~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~-----ga~~~~~d~~~g~T  682 (923)
                      +. .|.||||+|  .++.+++++|+++|+|+|..|..|.||||+|+..+...++.++|+..     +.+.+.++. .|.+
T Consensus       265 ~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~~~~~~~~~~~~~~~-~g~~  341 (477)
T PHA02878        265 SYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNS-EGFI  341 (477)
T ss_pred             CCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHHHHHHHhccCcccCc-HHHH
Confidence            86 799999999  56789999999999999999999999999999876567788877764     456777776 7777


Q ss_pred             HHHHHHH
Q psy3899         683 ALHWAIY  689 (923)
Q Consensus       683 pLh~A~~  689 (923)
                      +-..++.
T Consensus       342 ~n~~~i~  348 (477)
T PHA02878        342 DNMDCIT  348 (477)
T ss_pred             HHHHHHh
Confidence            6544443

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.2e-37  Score=341.97  Aligned_cols=172  Identities=16%  Similarity=0.151  Sum_probs=144.4

Q ss_pred             ccccccCcccccccCCCCccHHHHHHHcCCH-HHHHHHHHcCCCCCccCCCCChHHH-HHHHhCcHHHHHHHHHCCCccc
Q psy3899           2 KYFISQGAIVDAIGGDLQATPLHWATRQGHL-DSVVLLIQHGADPTLMDSEGSTCIH-QAAQFGHTRIVAYLVAKGINVN   79 (923)
Q Consensus         2 ~~Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~-~~V~~Ll~~ga~~~~~d~~g~TpLh-~Aa~~g~~~iv~~Ll~~ga~vn   79 (923)
                      +.|++.|+++=.. .+ |.||||.-...-+. .-+++++.-|-+++..+-+|.+|+| +|..+|+.|+|++|+++||++|
T Consensus        22 ~~l~~~g~~~~~~-~~-~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN   99 (631)
T PHA02792         22 QSLIESGANPLYE-YD-GETPLKAYVTKKNNNIKNDVVILLLSSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEIN   99 (631)
T ss_pred             HHHHHcCCCcccc-cC-CCccHHHHHhhhhhhHHHHHHHHHHhCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCcc
Confidence            4688999999884 33 78999998766653 3356666667788889999999998 5667899999999999999999


Q ss_pred             ccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcc------------------------------------cccccCCCcH
Q psy3899          80 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTT------------------------------------IQDKIHGNVA  123 (923)
Q Consensus        80 ~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~------------------------------------~~d~~~g~T~  123 (923)
                      .+++.|.||||+|+..+.+.|++++|++.||+++                                    ..|. .|.||
T Consensus       100 ~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~t~  178 (631)
T PHA02792        100 SIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDR-MGKTV  178 (631)
T ss_pred             cccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCC-CCCch
Confidence            9999999999999775446999999999998742                                    3344 69999


Q ss_pred             HHHHHHhC-------cHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899         124 LHWAIYAK-------NHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  179 (923)
Q Consensus       124 L~~A~~~g-------~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~  179 (923)
                      ||+|+.++       +.++++.|+++|++++..|..|.||||+|+.+.+.+   .+++++|.+
T Consensus       179 L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~---~ei~~~L~~  238 (631)
T PHA02792        179 LYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIK---REIFDALFD  238 (631)
T ss_pred             HHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccch---HHHHHHHHh
Confidence            99999999       899999999999999999999999999999999332   339999987

>KOG0508|consensus

Probab=100.00  E-value=2.2e-36  Score=310.68  Aligned_cols=171  Identities=29%  Similarity=0.411  Sum_probs=155.2

Q ss_pred             Cccccc-cCcccccccC-------CCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHH
Q psy3899           1 MKYFIS-QGAIVDAIGG-------DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV   72 (923)
Q Consensus         1 v~~Li~-~g~~~n~~~~-------~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll   72 (923)
                      |++|++ -|+++-....       -.|-+||-.|+..||+|+||+|+++|++||.......|||--||.-||.++||||+
T Consensus        58 VeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLv  137 (615)
T KOG0508|consen   58 VEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLV  137 (615)
T ss_pred             HHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHH
Confidence            355665 5555443311       12789999999999999999999999999999999999999999999999999999


Q ss_pred             HCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCC
Q psy3899          73 AKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQ  152 (923)
Q Consensus        73 ~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~  152 (923)
                      |+|+|++..|+.|.|.||+||++|| .+|+++|++.|+|+|.++. .|+|+||.|+++|++++|++|+++|+.+ .+|..
T Consensus       138 E~gad~~IanrhGhTcLmIa~ykGh-~~I~qyLle~gADvn~ks~-kGNTALH~caEsG~vdivq~Ll~~ga~i-~~d~~  214 (615)
T KOG0508|consen  138 EHGADPEIANRHGHTCLMIACYKGH-VDIAQYLLEQGADVNAKSY-KGNTALHDCAESGSVDIVQLLLKHGAKI-DVDGH  214 (615)
T ss_pred             HcCCCCcccccCCCeeEEeeeccCc-hHHHHHHHHhCCCcchhcc-cCchHHHhhhhcccHHHHHHHHhCCcee-eecCC
Confidence            9999999999999999999999996 9999999999999999999 9999999999999999999999999976 45667


Q ss_pred             CCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899         153 GLTPFMLLEENIGAPWLGKATVDKITE  179 (923)
Q Consensus       153 g~t~L~~A~~~g~~~~~~~~~v~~L~~  179 (923)
                      |.|||..|+..|+.+     +|++|+.
T Consensus       215 GmtPL~~Aa~tG~~~-----iVe~L~~  236 (615)
T KOG0508|consen  215 GMTPLLLAAVTGHTD-----IVERLLQ  236 (615)
T ss_pred             CCchHHHHhhhcchH-----HHHHHhc
Confidence            999999999999999     9999996

>KOG4412|consensus

Probab=100.00  E-value=5.6e-37  Score=276.46  Aligned_cols=194  Identities=27%  Similarity=0.377  Sum_probs=179.6

Q ss_pred             hhhHHHHHHhcC-CCCCCCC-CCCcHhHHHHHcCcHHHHHHHH-hCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHC
Q psy3899         525 LSDKYQFVEAGQ-DVNEPDS-ETVTLLHWAAINNRIEIMKYFI-SQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH  601 (923)
Q Consensus       525 ~~~~~~ll~~~~-~~~~~~~-~g~t~Lh~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  601 (923)
                      ...+++++.... .++.++. +|+|||||||.-|+.+++.+|+ +.+..+|..++. ||||||.||..|+.++|+.|+.+
T Consensus        16 ~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDda-GWtPlhia~s~g~~evVk~Ll~r   94 (226)
T KOG4412|consen   16 EFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDA-GWTPLHIAASNGNDEVVKELLNR   94 (226)
T ss_pred             HHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCcccc-CCchhhhhhhcCcHHHHHHHhcC
Confidence            566677776655 5677766 9999999999999999999999 567777777555 99999999999999999999998


Q ss_pred             -CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCC
Q psy3899         602 -GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG  680 (923)
Q Consensus       602 -g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g  680 (923)
                       |+|+|..++.|.||||+|+..|..+++++|+++|+.++.+|..|.||||-|+..| +.+++++|+..|+.+|.+|+ .|
T Consensus        95 ~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavG-klkvie~Li~~~a~~n~qDk-~G  172 (226)
T KOG4412|consen   95 SGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVG-KLKVIEYLISQGAPLNTQDK-YG  172 (226)
T ss_pred             CCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhcc-chhhHHHHHhcCCCCCcccc-cC
Confidence             9999999999999999999999999999999999999999999999999999998 99999999999999999999 99


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Q psy3899         681 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEE  722 (923)
Q Consensus       681 ~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~  722 (923)
                      +||||.|...|+.++..+|+++|||++..|++| ||+..|..
T Consensus       173 ~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  173 FTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             ccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHH
Confidence            999999988899999999999999999999999 99888765

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.2e-35  Score=325.44  Aligned_cols=381  Identities=14%  Similarity=0.071  Sum_probs=290.6

Q ss_pred             ccHHHHHHHcCCHHH--HHHHHHcCCCCCccCCCCChHHHHHHHhCcHH-HHHHHHHCCCcccccCCCCCcHHHHHHHhc
Q psy3899          20 ATPLHWATRQGHLDS--VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR-IVAYLVAKGINVNLQDRNGMTALMWSAYKV   96 (923)
Q Consensus        20 ~T~Lh~Aa~~g~~~~--V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~-iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g   96 (923)
                      ...|.-.|..-+.+.  .++|++.|++|-. ..+|.||||.=....|.. =+++++.-|.+++..+-+|.+|+|+-|..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~s~n   82 (631)
T PHA02792          4 DKILYDSCKTFNIDACSAQSLIESGANPLY-EYDGETPLKAYVTKKNNNIKNDVVILLLSSVDYKNINDFDIFEYLCSDN   82 (631)
T ss_pred             hhHHHhHhhccchhHHHHHHHHHcCCCccc-ccCCCccHHHHHhhhhhhHHHHHHHHHHhCCCcCccCCccHHHHHHHhc
Confidence            455566666655554  6899999999988 688999999887776643 344556666778899999999999877765


Q ss_pred             CCCchhHHHHhcCCCcccccccCCCcHHHHHHH-hCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhh
Q psy3899          97 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIY-AKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVD  175 (923)
Q Consensus        97 ~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~-~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~  175 (923)
                      .+.|+|++|+++||++|.+++ +|.||+|+|+. .|+.|+|++|+++||+++..+..|.||++.-......-        
T Consensus        83 ~~lElvk~LI~~GAdvN~~~n-~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~--------  153 (631)
T PHA02792         83 IDIELLKLLISKGLEINSIKN-GINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYY--------  153 (631)
T ss_pred             ccHHHHHHHHHcCCCcccccC-CCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhccccccc--------
Confidence            579999999999999999999 89999999976 69999999999999999999999999987644221100        


Q ss_pred             HHHHHHhhhhhhhhhHhhhcccchhhhhHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q psy3899         176 KITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKI  255 (923)
Q Consensus       176 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (923)
                                +                                                                     
T Consensus       154 ----------~---------------------------------------------------------------------  154 (631)
T PHA02792        154 ----------N---------------------------------------------------------------------  154 (631)
T ss_pred             ----------c---------------------------------------------------------------------
Confidence                      0                                                                     


Q ss_pred             cchhhhhhhHHHhhhhHHHhhhhhhhHHHHHhhhhhhhHHHHhhhhhccCCCccccCChhhHHHHHHHHHhcCCCCCCcc
Q psy3899         256 LPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSF  335 (923)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (923)
                                                                 | ...-+|.++                          
T Consensus       155 -------------------------------------------~-~~~~~~~~~--------------------------  164 (631)
T PHA02792        155 -------------------------------------------W-DDELDDYDY--------------------------  164 (631)
T ss_pred             -------------------------------------------h-hhhcccccc--------------------------
Confidence                                                       0 000000000                          


Q ss_pred             ccccccccCCcCcCccchhhHhhccCCCCccccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhh
Q psy3899         336 CSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREV  415 (923)
Q Consensus       336 c~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~  415 (923)
                                                                                                      
T Consensus       165 --------------------------------------------------------------------------------  164 (631)
T PHA02792        165 --------------------------------------------------------------------------------  164 (631)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhccccccccCCCCCCCCcccccccccccc
Q psy3899         416 MFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVD  495 (923)
Q Consensus       416 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~  495 (923)
                                                                |.+.+             -++..|.||||+++.....+
T Consensus       165 ------------------------------------------~~~i~-------------~~~~~g~t~L~~~i~~~s~~  189 (631)
T PHA02792        165 ------------------------------------------DYTTD-------------YDDRMGKTVLYYYIITRSQD  189 (631)
T ss_pred             ------------------------------------------ccccc-------------cCCCCCCchHHHHHhhCCcc
Confidence                                                      00000             01344779999998765211


Q ss_pred             ccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcC--cHHHHHHHHhCCCc---
Q psy3899         496 FTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINN--RIEIMKYFISQGAI---  570 (923)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~g~~---  570 (923)
                         .                     ...+.+.++.|+++|++++.+|..|.||||+|+.+.  +.|++++|++...+   
T Consensus       190 ---~---------------------~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~  245 (631)
T PHA02792        190 ---G---------------------YATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNE  245 (631)
T ss_pred             ---c---------------------ccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccc
Confidence               0                     011379999999999999999999999999999999  88999999874210   


Q ss_pred             -------------------cccc--C-CCCCch------------------------------HHHHHHHcC--CHHHHH
Q psy3899         571 -------------------VDAI--G-GDLQAT------------------------------PLHWATRQG--HLDSVV  596 (923)
Q Consensus       571 -------------------~~~~--~-~~~g~t------------------------------~Lh~A~~~g--~~~~v~  596 (923)
                                         ++..  . --.|.+                              .||.=...+  +.++++
T Consensus       246 ~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK  325 (631)
T PHA02792        246 LMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIK  325 (631)
T ss_pred             hHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHH
Confidence                               1100  0 000111                              233333444  788999


Q ss_pred             HHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCC--CcHHHHHHHhhCCc---chHHHHHhcCCC
Q psy3899         597 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG--MTALMWSAYKVFSL---DPTRLLITFGAS  671 (923)
Q Consensus       597 ~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g--~t~Lh~a~~~~~~~---~~~~~Ll~~ga~  671 (923)
                      +|+++|++..  ...+..+++.|+..|+.+++++|+++|++++.+|..|  .||||+|+... ..   +++++|+.+|+|
T Consensus       326 ~LId~Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~-~~~v~~IlklLIs~GAD  402 (631)
T PHA02792        326 CMIDEGATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIH-ESDVLSILKLCKPYIDD  402 (631)
T ss_pred             HHHHCCCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhc-cHhHHHHHHHHHhcCCc
Confidence            9999999975  2335678999999999999999999999999999875  69999877554 33   457889999999


Q ss_pred             CcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Q psy3899         672 TTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEE  722 (923)
Q Consensus       672 ~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~  722 (923)
                      +|.+|. .|.||||+|+..++.+++++|+++|+|++.+|..|+||+++|..
T Consensus       403 IN~kD~-~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        403 INKIDK-HGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             cccccc-cCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            999998 99999999999999999999999999999999999999999976

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.1e-35  Score=308.80  Aligned_cols=140  Identities=20%  Similarity=0.153  Sum_probs=126.4

Q ss_pred             cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhc
Q psy3899          29 QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF  108 (923)
Q Consensus        29 ~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~  108 (923)
                      .++.+++++|+++|++  .+|.+|+||||+|+..|+.+++++|+++|++++.++  |.||||+|+..| +.+++++|++.
T Consensus         9 ~~~~~~~~~Lis~~a~--~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g-~~eiV~lLL~~   83 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF--KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLE-DTKIVKILLFS   83 (284)
T ss_pred             cCHHHHHHHHHhCCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCC-CHHHHHHHHHC
Confidence            5788999999999874  679999999999999999999999999999998865  789999999999 49999999999


Q ss_pred             CCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCC-CChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899         109 GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQG-LTPFMLLEENIGAPWLGKATVDKITE  179 (923)
Q Consensus       109 ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g-~t~L~~A~~~g~~~~~~~~~v~~L~~  179 (923)
                      |++++.+|. .|.||||+|+..|+.++|++|+++|++++.++..| .||||+|+..|+.+     ++++|++
T Consensus        84 Gadvn~~d~-~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~e-----ivk~LL~  149 (284)
T PHA02791         84 GMDDSQFDD-KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS-----IVSYFLS  149 (284)
T ss_pred             CCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHH-----HHHHHHh
Confidence            999999998 99999999999999999999999999998888887 48999999888888     7777664

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.5e-35  Score=337.96  Aligned_cols=179  Identities=17%  Similarity=0.235  Sum_probs=116.3

Q ss_pred             HHHHHhcCCCCCCCCCCCcHhHHHHHcCc---HHHHHHHHhCCCcccccCCCCCchHHHHHHHc----CCHHHHHHHHHC
Q psy3899         529 YQFVEAGQDVNEPDSETVTLLHWAAINNR---IEIMKYFISQGAIVDAIGGDLQATPLHWATRQ----GHLDSVVLLIQH  601 (923)
Q Consensus       529 ~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~---~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~----g~~~~v~~Ll~~  601 (923)
                      +.|+++|+|++.+|..|.||||+|+..|+   .+++++|+++|++++..++..|.||||.++..    ++.+++++|+++
T Consensus       129 ~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~  208 (489)
T PHA02798        129 LFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDN  208 (489)
T ss_pred             HHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHC
Confidence            34445555556566666666666666555   66666666666666655444466666666543    356667777777


Q ss_pred             CCCCCCCCCCCChHHH-------HHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcc
Q psy3899         602 GADPTLMDSEGSTCIH-------QAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTI  674 (923)
Q Consensus       602 g~~~~~~d~~g~t~Lh-------~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~  674 (923)
                      |++++..+..|.++++       .+...++.+++++|+. ++|+|.+|..|+||||+|+..+ +.+++++|++.|+|++.
T Consensus       209 Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~~~~-~~~~v~~LL~~GAdin~  286 (489)
T PHA02798        209 GFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDINQVDELGFNPLYYSVSHN-NRKIFEYLLQLGGDINI  286 (489)
T ss_pred             CCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCCCCCcCcCCccHHHHHHHcC-cHHHHHHHHHcCCcccc
Confidence            7766666666666655       2334455666666554 4777777777777777777666 66777777777777777


Q ss_pred             cccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q psy3899         675 QDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPN  710 (923)
Q Consensus       675 ~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d  710 (923)
                      +|. .|+||||+|+..++.++++.|+++|++++..+
T Consensus       287 ~d~-~G~TpL~~A~~~~~~~iv~~lL~~~~~~~~i~  321 (489)
T PHA02798        287 ITE-LGNTCLFTAFENESKFIFNSILNKKPNKNTIS  321 (489)
T ss_pred             cCC-CCCcHHHHHHHcCcHHHHHHHHccCCCHHHHH
Confidence            776 77777777777777777777777777666443

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.3e-35  Score=339.09  Aligned_cols=159  Identities=21%  Similarity=0.215  Sum_probs=126.4

Q ss_pred             CccccccCcccccccCCCCccHHHHHHH--cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHh-----CcHHHHHHHHH
Q psy3899           1 MKYFISQGAIVDAIGGDLQATPLHWATR--QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQF-----GHTRIVAYLVA   73 (923)
Q Consensus         1 v~~Li~~g~~~n~~~~~~g~T~Lh~Aa~--~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~-----g~~~iv~~Ll~   73 (923)
                      |+.|++.| ++|..  ..|.|+++.+..  .++.++|++|+++|+++|.+|..|.||||.|+.+     ++.+++++|++
T Consensus        21 v~~ll~~~-~~~~~--~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~   97 (489)
T PHA02798         21 VKLLIKSC-NPNEI--VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIE   97 (489)
T ss_pred             HHHHHhcC-Chhhh--cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHH
Confidence            46677654 55544  226677764443  3478889999999999998888899999888764     67889999999


Q ss_pred             CCCcccccCCCCCcHHHHHHHhcC--CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCc---HHHHHHHHhcCCCCCC
Q psy3899          74 KGINVNLQDRNGMTALMWSAYKVF--SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN---HVAITTLVSHTSSLEI  148 (923)
Q Consensus        74 ~ga~vn~~d~~g~TpL~~Aa~~g~--~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~---~~iv~~Ll~~ga~~~~  148 (923)
                      +|+++|.+|.+|+||||+|+..+.  +.+++++|+++|++++..|. .|.||||+|++.|+   .+++++|+++|++++.
T Consensus        98 ~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~-~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~  176 (489)
T PHA02798         98 NGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDK-DGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINT  176 (489)
T ss_pred             CCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCC-CCCcHHHHHHHcCCcchHHHHHHHHHhCCCccc
Confidence            999999998889999998888752  47888899999999988888 88999999988887   8889999998888887


Q ss_pred             CC-CCCCChHHHHHhh
Q psy3899         149 PN-AQGLTPFMLLEEN  163 (923)
Q Consensus       149 ~~-~~g~t~L~~A~~~  163 (923)
                      .+ ..|.||||.++..
T Consensus       177 ~~~~~~~t~Lh~~~~~  192 (489)
T PHA02798        177 HNNKEKYDTLHCYFKY  192 (489)
T ss_pred             ccCcCCCcHHHHHHHh
Confidence            74 5688888877654

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=4e-35  Score=306.74  Aligned_cols=137  Identities=20%  Similarity=0.285  Sum_probs=126.7

Q ss_pred             CccccccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccc
Q psy3899           1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL   80 (923)
Q Consensus         1 v~~Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~   80 (923)
                      +++|+++|++  ..|.. |.||||+|+..|+.++|++|++.|++++.++  |+||||+|+..|+.++|++|+++|++++.
T Consensus        15 ~~~Lis~~a~--~~D~~-G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~   89 (284)
T PHA02791         15 KSFLSSKDAF--KADVH-GHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQ   89 (284)
T ss_pred             HHHHHhCCCC--CCCCC-CCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCC
Confidence            3688999885  45555 9999999999999999999999999998864  79999999999999999999999999999


Q ss_pred             cCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCC-CcHHHHHHHhCcHHHHHHHHhcCC
Q psy3899          81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG-NVALHWAIYAKNHVAITTLVSHTS  144 (923)
Q Consensus        81 ~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g-~T~L~~A~~~g~~~iv~~Ll~~ga  144 (923)
                      +|.+|.||||+|+..|+ .+++++|+++|++++.++. .| .||||+|+..|+.++|++|++++.
T Consensus        90 ~d~~G~TpLh~Aa~~g~-~eivk~Ll~~gadin~~~~-~g~~TpL~~Aa~~g~~eivk~LL~~~~  152 (284)
T PHA02791         90 FDDKGNTALYYAVDSGN-MQTVKLFVKKNWRLMFYGK-TGWKTSFYHAVMLNDVSIVSYFLSEIP  152 (284)
T ss_pred             CCCCCCCHHHHHHHcCC-HHHHHHHHHCCCCcCccCC-CCCcHHHHHHHHcCCHHHHHHHHhcCC
Confidence            99999999999999995 9999999999999999988 77 599999999999999999998754

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-34  Score=328.26  Aligned_cols=147  Identities=20%  Similarity=0.213  Sum_probs=136.8

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCC
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS   98 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~   98 (923)
                      ++++||.|+..|+.++|+.|+++|++++.++.+|.||||+|+..|+.+++++|+++|++++..+.++.||||.|+..| +
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g-~   80 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEG-D   80 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCC-C
Confidence            579999999999999999999999999999999999999999999999999999999999999999999999999999 5


Q ss_pred             CchhHHHHhcCCCccc-ccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCC
Q psy3899          99 LDPTRLLITFGASTTI-QDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAP  167 (923)
Q Consensus        99 ~~vv~lLl~~ga~~~~-~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~  167 (923)
                      .+++++|++.|++++. .+. .|.||||+|+..|+.++|++|+++|++++.++..|.||||+|+..|+.+
T Consensus        81 ~~~v~~Ll~~~~~~~~~~~~-~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~  149 (413)
T PHA02875         81 VKAVEELLDLGKFADDVFYK-DGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK  149 (413)
T ss_pred             HHHHHHHHHcCCcccccccC-CCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            9999999999988754 455 7999999999999999999999999999999999999999999887665

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.4e-34  Score=322.39  Aligned_cols=183  Identities=21%  Similarity=0.264  Sum_probs=141.4

Q ss_pred             CCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHH
Q psy3899         539 NEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ  618 (923)
Q Consensus       539 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~  618 (923)
                      +..+.++.||||.|+..|+.+++++|++.|++.+...+..|.||||+|+..|+.+++++|+++|+|++.++..|.||||+
T Consensus        62 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~  141 (413)
T PHA02875         62 DVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHL  141 (413)
T ss_pred             cccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Confidence            33445567788888888888888888887776655444557888888888888888888888888888888888888888


Q ss_pred             HHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHH
Q psy3899         619 AAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT  698 (923)
Q Consensus       619 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~  698 (923)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|++.|++++..+...+.||+|+|+..|+.+++++
T Consensus       142 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g-~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~  220 (413)
T PHA02875        142 AVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKG-DIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRL  220 (413)
T ss_pred             HHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHH
Confidence            88888888888888888888888888888888888777 77888888888888887777334577888888888888888


Q ss_pred             HHHCCCCCCCC---CCCCCCHHHHHHh
Q psy3899         699 LVSHTSSLEIP---NAQGLTPFMLLEE  722 (923)
Q Consensus       699 Ll~~gad~~~~---d~~g~tpl~~a~~  722 (923)
                      |+++|+|++..   +.+|.||++++..
T Consensus       221 Ll~~gad~n~~~~~~~~~~t~l~~~~~  247 (413)
T PHA02875        221 FIKRGADCNIMFMIEGEECTILDMICN  247 (413)
T ss_pred             HHHCCcCcchHhhcCCCchHHHHHHHh
Confidence            88888887765   5667788887654

>KOG4412|consensus

Probab=100.00  E-value=1.1e-34  Score=261.64  Aligned_cols=163  Identities=29%  Similarity=0.405  Sum_probs=156.2

Q ss_pred             ccccccCCCCccHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCcHHHHHHHHHC-CCcccccCCCCCc
Q psy3899          10 IVDAIGGDLQATPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMT   87 (923)
Q Consensus        10 ~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~-ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~-ga~vn~~d~~g~T   87 (923)
                      .+|.+++..|+|||||||+.|+.++|++|++. ++.+|.+|..||||||.||..|+.++|+-|+.+ |+++|..++.|.|
T Consensus        29 SL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T  108 (226)
T KOG4412|consen   29 SLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQT  108 (226)
T ss_pred             hhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcc
Confidence            57888886699999999999999999999955 899999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCC
Q psy3899          88 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAP  167 (923)
Q Consensus        88 pL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~  167 (923)
                      |||+||.+| ..+|+++|+++|+.++.+|. .|.||||.||.-|.++++++|++.|+.+|..|+.|+||||.|...|+.+
T Consensus       109 ~LHyAagK~-r~eIaqlLle~ga~i~~kD~-~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d  186 (226)
T KOG4412|consen  109 CLHYAAGKG-RLEIAQLLLEKGALIRIKDK-QGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPD  186 (226)
T ss_pred             eehhhhcCC-hhhHHHHHHhcCCCCccccc-ccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCch
Confidence            999999999 59999999999999999999 9999999999999999999999999999999999999999998889999


Q ss_pred             CCchhhhhHHHH
Q psy3899         168 WLGKATVDKITE  179 (923)
Q Consensus       168 ~~~~~~v~~L~~  179 (923)
                           +..+|.+
T Consensus       187 -----~a~lLV~  193 (226)
T KOG4412|consen  187 -----VAVLLVR  193 (226)
T ss_pred             -----HHHHHHH
Confidence                 8888887

>KOG0508|consensus

Probab=99.97  E-value=1.3e-31  Score=275.59  Aligned_cols=137  Identities=34%  Similarity=0.517  Sum_probs=130.8

Q ss_pred             CccccccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccc
Q psy3899           1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL   80 (923)
Q Consensus         1 v~~Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~   80 (923)
                      ||+|+++|++||..... ..|||-.||..|+.|+||+|+++|+|+++.|+.|.|.||+||+.||.+|+++|++.|+|+|.
T Consensus       100 Vk~L~~~ga~VN~tT~T-NStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~  178 (615)
T KOG0508|consen  100 VKLLLRRGASVNDTTRT-NSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNA  178 (615)
T ss_pred             HHHHHHhcCcccccccc-CCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcch
Confidence            68999999999998766 77999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHh
Q psy3899          81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVS  141 (923)
Q Consensus        81 ~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~  141 (923)
                      ++..|+|+||.|+..| +.+++++|+.+|+.++. |. .|.|||..|+..|+.++|++|++
T Consensus       179 ks~kGNTALH~caEsG-~vdivq~Ll~~ga~i~~-d~-~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  179 KSYKGNTALHDCAESG-SVDIVQLLLKHGAKIDV-DG-HGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             hcccCchHHHhhhhcc-cHHHHHHHHhCCceeee-cC-CCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999999999 59999999999998874 45 79999999999999999999996

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.1e-28  Score=247.62  Aligned_cols=177  Identities=20%  Similarity=0.260  Sum_probs=158.8

Q ss_pred             CCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcC--CHHHHHHHHHCCCCCCCCC-CCCChHHHH
Q psy3899         542 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG--HLDSVVLLIQHGADPTLMD-SEGSTCIHQ  618 (923)
Q Consensus       542 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~g~~~~~~d-~~g~t~Lh~  618 (923)
                      .+.+.||||+|+..|+.++|+.|++.+   +.. +..|.||||+|+..+  +.+++++|+++|++++.++ ..|.||||+
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~---n~~-~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~   93 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFV---NDC-NDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHH   93 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhh---hcc-CccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHH
Confidence            456899999999999999999999863   333 344999999999854  8999999999999999997 489999999


Q ss_pred             HHHc---CcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHh-hCCcchHHHHHhcCCCCcccccCCCChHHHH-HHHcCCH
Q psy3899         619 AAQF---GHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK-VFSLDPTRLLITFGASTTIQDKIHGNVALHW-AIYAKNH  693 (923)
Q Consensus       619 A~~~---~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~-~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~-A~~~~~~  693 (923)
                      |+..   ++.+++++|+++|+++|.+|..|.||||+|+.. ..+.+++++|++.|++++.+|. .|+||||. |+..++.
T Consensus        94 a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~-~g~t~Lh~~a~~~~~~  172 (209)
T PHA02859         94 YLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDF-DNNNILYSYILFHSDK  172 (209)
T ss_pred             HHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccC-CCCcHHHHHHHhcCCH
Confidence            8764   479999999999999999999999999998764 2378999999999999999998 99999995 5678899


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHhc
Q psy3899         694 VAITTLVSHTSSLEIPNAQGLTPFMLLEEN  723 (923)
Q Consensus       694 ~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~  723 (923)
                      +++++|+++|+|++.+|..|+||+++|..+
T Consensus       173 ~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        173 KIFDFLTSLGIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHhhh
Confidence            999999999999999999999999999875

>KOG4369|consensus

Probab=99.95  E-value=5.7e-29  Score=276.73  Aligned_cols=329  Identities=21%  Similarity=0.200  Sum_probs=272.8

Q ss_pred             cccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCccccc-CCCCCcHH
Q psy3899          11 VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ-DRNGMTAL   89 (923)
Q Consensus        11 ~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~-d~~g~TpL   89 (923)
                      ++-....+-.|+|-.||+.||.|+|++|+..|+++..+|.+|.+||-+|+..||..+|+.|+++.++++.+ |+.+.|+|
T Consensus       749 id~~Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~l  828 (2131)
T KOG4369|consen  749 IDPLTEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTML  828 (2131)
T ss_pred             eccccCccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceE
Confidence            33344444679999999999999999999999999999999999999999999999999999999999876 88999999


Q ss_pred             HHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCC--CCCCCChHHHHHhhcCCC
Q psy3899          90 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIP--NAQGLTPFMLLEENIGAP  167 (923)
Q Consensus        90 ~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~--~~~g~t~L~~A~~~g~~~  167 (923)
                      .+||..| +.++|.+|+..|++-..++. ...|||.+|..-|+.++|+.|+.+|+.++.+  .+.|-.||++|.-+|+..
T Consensus       829 Slacsgg-r~~vvelLl~~gankehrnv-sDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~  906 (2131)
T KOG4369|consen  829 SLACSGG-RTRVVELLLNAGANKEHRNV-SDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQA  906 (2131)
T ss_pred             EEecCCC-cchHHHHHHHhhccccccch-hhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccH
Confidence            9999998 69999999999999988888 8999999999999999999999999888766  478899999999999999


Q ss_pred             CCchhhhhHHHHHHhhhhhhhhhHhhhcccchhhhhHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhc
Q psy3899         168 WLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVM  247 (923)
Q Consensus       168 ~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (923)
                           .++.|++   .+                                                               
T Consensus       907 -----at~~ll~---~g---------------------------------------------------------------  915 (2131)
T KOG4369|consen  907 -----ATLSLLQ---PG---------------------------------------------------------------  915 (2131)
T ss_pred             -----HHHHHhc---cc---------------------------------------------------------------
Confidence                 6666654   00                                                               


Q ss_pred             cccccccccchhhhhhhHHHhhhhHHHhhhhhhhHHHHHhhhhhhhHHHHhhhhhccCCCccccCChhhHHHHHHHHHhc
Q psy3899         248 FDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAER  327 (923)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (923)
                                                                                                      
T Consensus       916 --------------------------------------------------------------------------------  915 (2131)
T KOG4369|consen  916 --------------------------------------------------------------------------------  915 (2131)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCccccccccccCCcCcCccchhhHhhccCCCCccccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3899         328 GTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQF  407 (923)
Q Consensus       328 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~  407 (923)
                                                                                                      
T Consensus       916 --------------------------------------------------------------------------------  915 (2131)
T KOG4369|consen  916 --------------------------------------------------------------------------------  915 (2131)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccchhhHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhccccccccCCCCCCCCcccc
Q psy3899         408 QLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHR  487 (923)
Q Consensus       408 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~  487 (923)
                                                                         -++|+-...+            -.|+|-.
T Consensus       916 ---------------------------------------------------sdiNaqIeTN------------rnTaltl  932 (2131)
T KOG4369|consen  916 ---------------------------------------------------SDINAQIETN------------RNTALTL  932 (2131)
T ss_pred             ---------------------------------------------------chhccccccc------------cccceee
Confidence                                                               0000000000            1356666


Q ss_pred             ccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHhC
Q psy3899         488 GRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQ  567 (923)
Q Consensus       488 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  567 (923)
                      |+..+.                               .|.+..||...+++..+-+.|.|||+-++..|.+|+-++|+..
T Consensus       933 a~fqgr-------------------------------~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~  981 (2131)
T KOG4369|consen  933 ALFQGR-------------------------------PEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAA  981 (2131)
T ss_pred             ccccCc-------------------------------chHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhc
Confidence            665554                               6777788888888888888888999999989999998999999


Q ss_pred             CCcccccC-CCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCC
Q psy3899         568 GAIVDAIG-GDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGM  646 (923)
Q Consensus       568 g~~~~~~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~  646 (923)
                      |+|+|... .....|+|-.++..||.+.|+.|+...+.+..++++|.|+|-+|+..|....+..|+++++|++..|+.-.
T Consensus       982 gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~ 1061 (2131)
T KOG4369|consen  982 GADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTN 1061 (2131)
T ss_pred             ccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccChhhhhcccc
Confidence            98888642 22246888888888999999998888888888888899999999888888888889998888888888888


Q ss_pred             cHHHHHHHhhCCcchHHHHHh
Q psy3899         647 TALMWSAYKVFSLDPTRLLIT  667 (923)
Q Consensus       647 t~Lh~a~~~~~~~~~~~~Ll~  667 (923)
                      |+++-|.++| +.+||++...
T Consensus      1062 S~~maafRKg-h~~iVk~mv~ 1081 (2131)
T KOG4369|consen 1062 SRTMAAFRKG-HFAIVKKMVP 1081 (2131)
T ss_pred             cccHHHHHhc-hhheeccccC
Confidence            8888777776 7777776654

>KOG4369|consensus

Probab=99.95  E-value=3.3e-28  Score=270.79  Aligned_cols=123  Identities=20%  Similarity=0.221  Sum_probs=112.3

Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHh
Q psy3899          51 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYA  130 (923)
Q Consensus        51 ~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~  130 (923)
                      +-.|+|..||.+||.|+|++|+.+|+++..+|+.|.+||.+|+..|| ..+|+.|+.+-+++..+....++|+|.+||..
T Consensus       756 n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh-~tvV~~llk~ha~veaQsdrtkdt~lSlacsg  834 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGH-ITVVQDLLKAHADVEAQSDRTKDTMLSLACSG  834 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCc-hHHHHHHHhhhhhhhhhcccccCceEEEecCC
Confidence            55699999999999999999999999999999999999999999996 99999999999999887655999999999999


Q ss_pred             CcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899         131 KNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  179 (923)
Q Consensus       131 g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~  179 (923)
                      |+.++|++||.+|++-..+|-...|||.+|..-|..+     +|..|+.
T Consensus       835 gr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~-----iI~~llS  878 (2131)
T KOG4369|consen  835 GRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTK-----IIHALLS  878 (2131)
T ss_pred             CcchHHHHHHHhhccccccchhhcCchhhhcCcchHH-----HHHHHhh
Confidence            9999999999999998889988899999988877777     6666554

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.1e-26  Score=235.24  Aligned_cols=178  Identities=16%  Similarity=0.181  Sum_probs=156.9

Q ss_pred             CCCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcC--
Q psy3899         479 GQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINN--  556 (923)
Q Consensus       479 ~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g--  556 (923)
                      +.+.|||+.|+..+.                               .+.++.+++.   ++..|..|.||||+|+.++  
T Consensus        19 ~~~~~pL~~A~~~~~-------------------------------~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~   64 (209)
T PHA02859         19 YRYCNPLFYYVEKDD-------------------------------IEGVKKWIKF---VNDCNDLYETPIFSCLEKDKV   64 (209)
T ss_pred             hccCcHHHHHHHhCc-------------------------------HHHHHHHHHh---hhccCccCCCHHHHHHHcCCC
Confidence            345799999988776                               6777777764   5678889999999999865  


Q ss_pred             cHHHHHHHHhCCCcccccCCCCCchHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH--cCcHHHHHHH
Q psy3899         557 RIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ---GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ--FGHTRIVAYL  631 (923)
Q Consensus       557 ~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~--~~~~~~v~~L  631 (923)
                      +.+++++|+++|++++..+...|.||||+|+..   ++.+++++|+++|++++.+|..|.||||.|+.  .++.+++++|
T Consensus        65 ~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~L  144 (209)
T PHA02859         65 NVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLL  144 (209)
T ss_pred             CHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHH
Confidence            899999999999999987655699999998764   57999999999999999999999999999986  4689999999


Q ss_pred             HHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcC
Q psy3899         632 VAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAK  691 (923)
Q Consensus       632 l~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~  691 (923)
                      ++.|++++.+|..|.||||.++..+++.+++++|++.|++++.+|. .|.||||+|+.++
T Consensus       145 i~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~-~g~tpl~la~~~~  203 (209)
T PHA02859        145 IDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNK-SGYNCYDLIKFRN  203 (209)
T ss_pred             HHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHhhhh
Confidence            9999999999999999999755444489999999999999999998 9999999999764

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.4e-26  Score=250.40  Aligned_cols=185  Identities=15%  Similarity=0.093  Sum_probs=167.3

Q ss_pred             CCCChhhHHHHHHhcCCCC------CCCCCCCcHhHHHHH--cCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCH
Q psy3899         521 EPTSLSDKYQFVEAGQDVN------EPDSETVTLLHWAAI--NNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL  592 (923)
Q Consensus       521 ~~~~~~~~~~ll~~~~~~~------~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~  592 (923)
                      ..++.++++.|+.+|++++      .++..+.|+||.|+.  .|+.+++++|+++|++++..+   +.||+|+|+..|+.
T Consensus        86 ~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~~---~~t~lh~A~~~~~~  162 (437)
T PHA02795         86 YITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKIE---CLNAYFRGICKKES  162 (437)
T ss_pred             hcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCCC---CCCHHHHHHHcCcH
Confidence            3445899999999999998      788889999999999  899999999999999998643   58999999999999


Q ss_pred             HHHHHHHHCCCCCCCC------CCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHH
Q psy3899         593 DSVVLLIQHGADPTLM------DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI  666 (923)
Q Consensus       593 ~~v~~Ll~~g~~~~~~------d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll  666 (923)
                      +++++|+++|++....      +..|.|++|.|+..++.+++++|+++|+++|.+|..|+||||+|+..| +.+++++|+
T Consensus       163 eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g-~~eiVelLL  241 (437)
T PHA02795        163 SVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAG-YIDLVSWLL  241 (437)
T ss_pred             HHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcC-CHHHHHHHH
Confidence            9999999999854322      234789999999999999999999999999999999999999999888 899999999


Q ss_pred             hcCCCCcccccCCCChHHHHHHHcCC--------HHHHHHHHHCCCCCCCCC
Q psy3899         667 TFGASTTIQDKIHGNVALHWAIYAKN--------HVAITTLVSHTSSLEIPN  710 (923)
Q Consensus       667 ~~ga~~~~~d~~~g~TpLh~A~~~~~--------~~~v~~Ll~~gad~~~~d  710 (923)
                      +.|++++.+|. .|+||||+|+..|+        .+++++|+++|++++..+
T Consensus       242 ~~GAdIN~~d~-~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~  292 (437)
T PHA02795        242 ENGANVNAVMS-NGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIK  292 (437)
T ss_pred             HCCCCCCCcCC-CCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchh
Confidence            99999999998 99999999999984        689999999999888654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=3.6e-26  Score=247.31  Aligned_cols=190  Identities=15%  Similarity=0.102  Sum_probs=171.1

Q ss_pred             hHHHHHHhcCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCccc------ccCCCCCchHHHHHHH--cCCHHHHHHH
Q psy3899         527 DKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVD------AIGGDLQATPLHWATR--QGHLDSVVLL  598 (923)
Q Consensus       527 ~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~------~~~~~~g~t~Lh~A~~--~g~~~~v~~L  598 (923)
                      .-+.++.+|+++|..+.+|     +|+..+..|++++|+++|++++      .. ...++|+||.|+.  .|+.++|++|
T Consensus        64 ~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~-~~~~~~~L~~~~~n~~n~~eiV~~L  137 (437)
T PHA02795         64 LYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKN-CNSVQDLLLYYLSNAYVEIDIVDFM  137 (437)
T ss_pred             HHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhc-cccccHHHHHHHHhcCCCHHHHHHH
Confidence            4467889999999998888     9999999999999999999988      43 4448999999999  8999999999


Q ss_pred             HHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCcc------CCCCCcHHHHHHHhhCCcchHHHHHhcCCCC
Q psy3899         599 IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ------DRNGMTALMWSAYKVFSLDPTRLLITFGAST  672 (923)
Q Consensus       599 l~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~------d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~  672 (923)
                      +++|||++..  ++.||||.|+..++.+++++|+++|++.+..      +..|.|++|.|+..+ ..+++++|+++|+++
T Consensus       138 I~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~-~~eIve~LIs~GADI  214 (437)
T PHA02795        138 VDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPT-VLEIYKLCIPYIEDI  214 (437)
T ss_pred             HHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcC-HHHHHHHHHhCcCCc
Confidence            9999999974  4589999999999999999999999854322      235788999888777 899999999999999


Q ss_pred             cccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhccCC
Q psy3899         673 TIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGA  726 (923)
Q Consensus       673 ~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~~~~  726 (923)
                      |.+|. .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.++..
T Consensus       215 N~kD~-~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~  267 (437)
T PHA02795        215 NQLDA-GGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSV  267 (437)
T ss_pred             CcCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCc
Confidence            99998 999999999999999999999999999999999999999999998753

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=1e-23  Score=257.08  Aligned_cols=178  Identities=20%  Similarity=0.246  Sum_probs=165.7

Q ss_pred             CCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q psy3899         541 PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA  620 (923)
Q Consensus       541 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~  620 (923)
                      .+.++.++||.||..|+.++++.|++.|++++..+.. |.||||+|+..|+.+++++|+++|+|++.+|.+|.||||.|+
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~-G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~  599 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSK-GRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAI  599 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHH
Confidence            3446789999999999999999999999999987655 999999999999999999999999999999999999999999


Q ss_pred             HcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHH
Q psy3899         621 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV  700 (923)
Q Consensus       621 ~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll  700 (923)
                      ..|+.+++++|++.+...+.  ..|.++||+|+..| +.++++.|+++|+|+|.+|. .|+||||+|+..|+.+++++|+
T Consensus       600 ~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g-~~~~v~~Ll~~Gadin~~d~-~G~TpLh~A~~~g~~~iv~~Ll  675 (823)
T PLN03192        600 SAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRN-DLTAMKELLKQGLNVDSEDH-QGATALQVAMAEDHVDMVRLLI  675 (823)
T ss_pred             HhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhC-CHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHCCcHHHHHHHH
Confidence            99999999999988766543  45789999999998 99999999999999999998 9999999999999999999999


Q ss_pred             HCCCCCCCCCCCC-CCHHHHHHhc
Q psy3899         701 SHTSSLEIPNAQG-LTPFMLLEEN  723 (923)
Q Consensus       701 ~~gad~~~~d~~g-~tpl~~a~~~  723 (923)
                      ++|+|++.+|..| .||.+++...
T Consensus       676 ~~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        676 MNGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             HcCCCCCCCCCCCCCCHHHHHHHH
Confidence            9999999999999 9999998763

>KOG0507|consensus

Probab=99.91  E-value=4.8e-24  Score=232.74  Aligned_cols=153  Identities=22%  Similarity=0.217  Sum_probs=142.6

Q ss_pred             ccHHHHHHHcCCHHHHHHHHHcC-------------CCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCC
Q psy3899          20 ATPLHWATRQGHLDSVVLLIQHG-------------ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGM   86 (923)
Q Consensus        20 ~T~Lh~Aa~~g~~~~V~~Ll~~g-------------a~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~   86 (923)
                      .+-|.-|+..|+.+.|..||+..             .++|..|.+|.|+||.|+.+|+.+++++|+++.+-++..|.+|.
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~   83 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGI   83 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCc
Confidence            36688899999999999999761             13566788999999999999999999999999999999999999


Q ss_pred             cHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCC
Q psy3899          87 TALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGA  166 (923)
Q Consensus        87 TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~  166 (923)
                      +|||+||-.|+ .+++|+|+..+..+|..+. .|.||||.||.+|+.++|.+|+.+|+|+.+.|+.+.|++.+|++-|..
T Consensus        84 ~plhlaaw~g~-~e~vkmll~q~d~~na~~~-e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~  161 (854)
T KOG0507|consen   84 LPLHLAAWNGN-LEIVKMLLLQTDILNAVNI-ENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRA  161 (854)
T ss_pred             ceEEehhhcCc-chHHHHHHhcccCCCcccc-cCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhh
Confidence            99999999995 9999999999999999988 999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhhHHHH
Q psy3899         167 PWLGKATVDKITE  179 (923)
Q Consensus       167 ~~~~~~~v~~L~~  179 (923)
                      +     +++.|+.
T Consensus       162 ~-----Vvq~ll~  169 (854)
T KOG0507|consen  162 E-----VVQMLLQ  169 (854)
T ss_pred             H-----HHHHHhh
Confidence            9     8888875

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=2e-23  Score=253.56  Aligned_cols=126  Identities=17%  Similarity=0.089  Sum_probs=103.3

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCChHHH-HHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHH
Q psy3899          18 LQATPLHWATRQGHLDSVVLLIQH--GADPTLMDSEGSTCIH-QAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY   94 (923)
Q Consensus        18 ~g~T~Lh~Aa~~g~~~~V~~Ll~~--ga~~~~~d~~g~TpLh-~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~   94 (923)
                      .++++++.||+.|+.+.|+.+++.  +.++|..|..|+|||| .|+.+++.+++++|+++|+    .+..|.||||.|+.
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~   91 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISL   91 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHh
Confidence            378999999999999999999999  8999999999999999 9999999999999999987    77889999998887


Q ss_pred             hcC--CCchhHHHHhcCCC------ccc----ccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCC
Q psy3899          95 KVF--SLDPTRLLITFGAS------TTI----QDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEI  148 (923)
Q Consensus        95 ~g~--~~~vv~lLl~~ga~------~~~----~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~  148 (923)
                      .++  ...+++++.+.+.+      ++.    .+. .|.||||+||.+|+.++|++|+++|++++.
T Consensus        92 ~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~-~G~TpLhlAa~~~~~eiVklLL~~GAdv~~  156 (743)
T TIGR00870        92 EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFT-PGITALHLAAHRQNYEIVKLLLERGASVPA  156 (743)
T ss_pred             ccHHHHHHHHHHHhhcccccCchhhhccccccccC-CCCcHHHHHHHhCCHHHHHHHHhCCCCCCc
Confidence            321  23344444444422      111    123 589999999999999999999999998863

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505|consensus

Probab=99.90  E-value=4.3e-24  Score=226.00  Aligned_cols=206  Identities=27%  Similarity=0.329  Sum_probs=183.3

Q ss_pred             hcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHH
Q psy3899         516 YEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSV  595 (923)
Q Consensus       516 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v  595 (923)
                      +..+...++.+.+..|+..|++++..+.+|.|+||-+|...+.+||++|+++|+++|..+.. ||||||.|+..||..++
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e-~wtPlhaaascg~~~i~  122 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNE-GWTPLHAAASCGYLNIV  122 (527)
T ss_pred             HHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccc-cCCcchhhcccccHHHH
Confidence            44555667799999999999999999999999999999999999999999999999998776 99999999999999999


Q ss_pred             HHHHHCCCCCCCCCCCCChHHHHHHHcCcH--------------------------HHHHHHHHcCCCCCccCCCCCcHH
Q psy3899         596 VLLIQHGADPTLMDSEGSTCIHQAAQFGHT--------------------------RIVAYLVAKGINVNLQDRNGMTAL  649 (923)
Q Consensus       596 ~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~--------------------------~~v~~Ll~~g~~~~~~d~~g~t~L  649 (923)
                      ++|+++|+++...+.+|..|+.++......                          +=+...+..|.+.+..+..|.|+|
T Consensus       123 ~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~l  202 (527)
T KOG0505|consen  123 EYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATAL  202 (527)
T ss_pred             HHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHH
Confidence            999999999999998888886654321111                          113344447888888888899999


Q ss_pred             HHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhcc
Q psy3899         650 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI  724 (923)
Q Consensus       650 h~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~~  724 (923)
                      |+|+.+| ..++.++|++.|.+++.+|. +|+||||.|+..|..+++++|+++|++.+.+++.|+||+++|.+..
T Consensus       203 HvAaa~G-y~e~~~lLl~ag~~~~~~D~-dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee~  275 (527)
T KOG0505|consen  203 HVAAANG-YTEVAALLLQAGYSVNIKDY-DGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEEE  275 (527)
T ss_pred             HHHHhhh-HHHHHHHHHHhccCcccccc-cCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhhh
Confidence            9999999 89999999999999999998 9999999999999999999999999999999999999999998853

>KOG0514|consensus

Probab=99.90  E-value=3.7e-24  Score=214.32  Aligned_cols=161  Identities=24%  Similarity=0.336  Sum_probs=146.9

Q ss_pred             ccccccCCCCccHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCChHHHHHHHh-----CcHHHHHHHHHCCCcccccC-
Q psy3899          10 IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG-ADPTLMDSEGSTCIHQAAQF-----GHTRIVAYLVAKGINVNLQD-   82 (923)
Q Consensus        10 ~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~g-a~~~~~d~~g~TpLh~Aa~~-----g~~~iv~~Ll~~ga~vn~~d-   82 (923)
                      -||..|.+ |+|+||||++.+|+++|+.||+.| ++++.+|..|.||+|+|+..     .+.++|+-|-.-| +||.+- 
T Consensus       260 vVNlaDsN-GNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAs  337 (452)
T KOG0514|consen  260 VVNLADSN-GNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKAS  337 (452)
T ss_pred             HhhhhcCC-CCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhh
Confidence            36777766 999999999999999999999997 79999999999999999975     5678999988876 888884 


Q ss_pred             CCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCCCCCCCCChHHHHH
Q psy3899          83 RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT-SSLEIPNAQGLTPFMLLE  161 (923)
Q Consensus        83 ~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~g-a~~~~~~~~g~t~L~~A~  161 (923)
                      .-|.|+||+|..+| ..++|+.|+.-|||+|.+|. +|.|+||+|+++||.+||++||... +|....|.+|.|+|++|.
T Consensus       338 Q~gQTALMLAVSHG-r~d~vk~LLacgAdVNiQDd-DGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAl  415 (452)
T KOG0514|consen  338 QHGQTALMLAVSHG-RVDMVKALLACGADVNIQDD-DGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIAL  415 (452)
T ss_pred             hhcchhhhhhhhcC-cHHHHHHHHHccCCCccccC-CccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHH
Confidence            45999999999999 59999999999999999999 9999999999999999999999874 799999999999999999


Q ss_pred             hhcCCCCCchhhhhHHHH
Q psy3899         162 ENIGAPWLGKATVDKITE  179 (923)
Q Consensus       162 ~~g~~~~~~~~~v~~L~~  179 (923)
                      +.|+.+     +.-+|-.
T Consensus       416 eagh~e-----Ia~mlYa  428 (452)
T KOG0514|consen  416 EAGHRE-----IAVMLYA  428 (452)
T ss_pred             hcCchH-----HHHHHHH
Confidence            999999     7666643

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=1.7e-23  Score=203.72  Aligned_cols=146  Identities=18%  Similarity=0.264  Sum_probs=134.2

Q ss_pred             cCcccccccCCCCccHHHHHHHcCCH----HHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHH---HHHHHHHCCCccc
Q psy3899           7 QGAIVDAIGGDLQATPLHWATRQGHL----DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR---IVAYLVAKGINVN   79 (923)
Q Consensus         7 ~g~~~n~~~~~~g~T~Lh~Aa~~g~~----~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~---iv~~Ll~~ga~vn   79 (923)
                      +|+|++..+.+ +.++||.||+.|+.    +++++|++.|++++.+|.+|+||||+|+..|+.+   ++++|+++|+++|
T Consensus         9 ~~~~~~~~~~~-~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin   87 (166)
T PHA02743          9 NNLGAVEIDED-EQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADIN   87 (166)
T ss_pred             cchHHhhhccC-CCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCC
Confidence            68899998876 88999999999998    6677888999999999999999999999999865   4899999999999


Q ss_pred             ccC-CCCCcHHHHHHHhcCCCchhHHHHh-cCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCC
Q psy3899          80 LQD-RNGMTALMWSAYKVFSLDPTRLLIT-FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLT  155 (923)
Q Consensus        80 ~~d-~~g~TpL~~Aa~~g~~~~vv~lLl~-~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t  155 (923)
                      .+| ..|.||||+|+..| +.+++++|++ .|++++.+|. .|.||||+|+..|+.+++++|+++|++++.++..|..
T Consensus        88 ~~d~~~g~TpLh~A~~~g-~~~iv~~Ll~~~gad~~~~d~-~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743         88 ARELGTGNTLLHIAASTK-NYELAEWLCRQLGVNLGAINY-QHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             CCCCCCCCcHHHHHHHhC-CHHHHHHHHhccCCCccCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence            998 58999999999999 4999999995 8999999998 9999999999999999999999999999999888753

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.89  E-value=3.4e-23  Score=252.37  Aligned_cols=152  Identities=23%  Similarity=0.225  Sum_probs=142.2

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCC
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS   98 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~   98 (923)
                      +.++||.||..|+.++++.|++.|+++|.+|.+|+||||+||.+|+.+++++|+++|+++|.+|.+|+||||+|+..|+ 
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~-  603 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKH-  603 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCC-
Confidence            6799999999999999999999999999999999999999999999999999999999999999999999999999995 


Q ss_pred             CchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHH
Q psy3899          99 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKIT  178 (923)
Q Consensus        99 ~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~  178 (923)
                      .+++++|++.++..+.  . .|.++||.|+.+|+.+++++|+++|++++.+|..|.||||+|+..|+.+     ++++|+
T Consensus       604 ~~iv~~L~~~~~~~~~--~-~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~-----iv~~Ll  675 (823)
T PLN03192        604 HKIFRILYHFASISDP--H-AAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVD-----MVRLLI  675 (823)
T ss_pred             HHHHHHHHhcCcccCc--c-cCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH-----HHHHHH
Confidence            9999999988876553  2 5779999999999999999999999999999999999999999999999     999999


Q ss_pred             H
Q psy3899         179 E  179 (923)
Q Consensus       179 ~  179 (923)
                      +
T Consensus       676 ~  676 (823)
T PLN03192        676 M  676 (823)
T ss_pred             H
Confidence            8

>KOG0502|consensus

Probab=99.89  E-value=1.4e-23  Score=195.61  Aligned_cols=177  Identities=21%  Similarity=0.226  Sum_probs=88.7

Q ss_pred             CCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q psy3899         543 SETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQF  622 (923)
Q Consensus       543 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~  622 (923)
                      .+|+.++|.|+-.|+...+..++.+|+..|..+- .+++|+.+++.+-+++.+..+.++  -+|..|..|.|||..|+..
T Consensus        94 p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~-~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~  170 (296)
T KOG0502|consen   94 PEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSL-MPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAK  170 (296)
T ss_pred             chhhhhhhhcCCCCCcceeeeeecccccCCcccc-ccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhc
Confidence            3455555555555555555555555544443322 245555555555554444444432  2344455555555555555


Q ss_pred             CcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHC
Q psy3899         623 GHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH  702 (923)
Q Consensus       623 ~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~  702 (923)
                      |+..+|++|++.|+|++...+...|+|+.|+..| -.+++++|+.++.|+|.-|- +|-|||-+|++.|+.+||+.|+..
T Consensus       171 G~i~vV~fLL~~GAdp~~lgk~resALsLAt~gg-ytdiV~lLL~r~vdVNvyDw-NGgTpLlyAvrgnhvkcve~Ll~s  248 (296)
T KOG0502|consen  171 GHIPVVQFLLNSGADPDALGKYRESALSLATRGG-YTDIVELLLTREVDVNVYDW-NGGTPLLYAVRGNHVKCVESLLNS  248 (296)
T ss_pred             CchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCC-hHHHHHHHHhcCCCcceecc-CCCceeeeeecCChHHHHHHHHhc
Confidence            5555555555555555555555555555544433 44555555555555555554 455555555555555555555555


Q ss_pred             CCCCCCCCCCCCCHHHHHHhcc
Q psy3899         703 TSSLEIPNAQGLTPFMLLEENI  724 (923)
Q Consensus       703 gad~~~~d~~g~tpl~~a~~~~  724 (923)
                      |||++..|..|.+++++|+..+
T Consensus       249 GAd~t~e~dsGy~~mdlAValG  270 (296)
T KOG0502|consen  249 GADVTQEDDSGYWIMDLAVALG  270 (296)
T ss_pred             CCCcccccccCCcHHHHHHHhh
Confidence            5555555555555555555443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.88  E-value=1.5e-22  Score=245.84  Aligned_cols=212  Identities=24%  Similarity=0.207  Sum_probs=172.4

Q ss_pred             hhhHhhcccCCCCChhhHHHHHHh--cCCCCCCCCCCCcHhH-HHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHH
Q psy3899         511 DWMKRYEVYTEPTSLSDKYQFVEA--GQDVNEPDSETVTLLH-WAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT  587 (923)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~~g~t~Lh-~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~  587 (923)
                      +....+..|+..++.+.++.+++.  +.++|..|..|.|||| .|+.+++.+++++|+++|+     .+..|.||||.|+
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~   90 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAIS   90 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHH
Confidence            344566677777889999999988  8999999999999999 8889999999999999997     3445999999998


Q ss_pred             HcC---CHHHHHHHHHCCCC------CC----CCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccC------------
Q psy3899         588 RQG---HLDSVVLLIQHGAD------PT----LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD------------  642 (923)
Q Consensus       588 ~~g---~~~~v~~Ll~~g~~------~~----~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d------------  642 (923)
                      ..+   ...+++.+.+.+.+      ++    ..+..|.||||+|+..|+.+++++|+++|++++.++            
T Consensus        91 ~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~  170 (743)
T TIGR00870        91 LEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVD  170 (743)
T ss_pred             hccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCC
Confidence            732   22334444444322      11    123569999999999999999999999999998653            


Q ss_pred             --CCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcC---------CHHHHHHHHHCCCCC-----
Q psy3899         643 --RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAK---------NHVAITTLVSHTSSL-----  706 (923)
Q Consensus       643 --~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~---------~~~~v~~Ll~~gad~-----  706 (923)
                        ..|+||||+|+..+ +.+++++|++.|+|++.+|. .|+||||+|+..+         ...+.+++++.+++.     
T Consensus       171 ~~~~g~tpL~~Aa~~~-~~~iv~lLl~~gadin~~d~-~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~e  248 (743)
T TIGR00870       171 SFYHGESPLNAAACLG-SPSIVALLSEDPADILTADS-LGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKE  248 (743)
T ss_pred             cccccccHHHHHHHhC-CHHHHHHHhcCCcchhhHhh-hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHh
Confidence              35999999999888 89999999999999999998 9999999999987         234666777766543     


Q ss_pred             --CCCCCCCCCHHHHHHhccCCCcc
Q psy3899         707 --EIPNAQGLTPFMLLEENIGAPWL  729 (923)
Q Consensus       707 --~~~d~~g~tpl~~a~~~~~~~~~  729 (923)
                        +++|.+|.||+++|++.++....
T Consensus       249 l~~i~N~~g~TPL~~A~~~g~~~l~  273 (743)
T TIGR00870       249 LEVILNHQGLTPLKLAAKEGRIVLF  273 (743)
T ss_pred             hhhhcCCCCCCchhhhhhcCCccHH
Confidence              77899999999999998766544

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502|consensus

Probab=99.87  E-value=1.7e-22  Score=188.46  Aligned_cols=232  Identities=20%  Similarity=0.262  Sum_probs=195.2

Q ss_pred             CCCCcccccccccccccccccc----ccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHc
Q psy3899         480 QFISPFHRGRLQNFVDFTGWSC----FGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAIN  555 (923)
Q Consensus       480 ~~~t~l~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~  555 (923)
                      .|+.-+-.+..++..|....+.    ....+.+...|.. ...+...++..++...+..|+..|..+--+.+|+.+++..
T Consensus        61 lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~-~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhq  139 (296)
T KOG0502|consen   61 LGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSA-LLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQ  139 (296)
T ss_pred             cCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhh-hhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHH
Confidence            3555666666666666654432    1222233333443 4455666688999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcC
Q psy3899         556 NRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG  635 (923)
Q Consensus       556 g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g  635 (923)
                      .+++++..+.++-  +|.. ++.|.|||.||+..|++.+|++|++.|+|++...+...|+|.+|++.|..++|++|++++
T Consensus       140 l~L~~~~~~~~n~--VN~~-De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~  216 (296)
T KOG0502|consen  140 LHLDVVDLLVNNK--VNAC-DEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTRE  216 (296)
T ss_pred             HHHHHHHHHhhcc--ccCc-cccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcC
Confidence            9998887766543  4444 456999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC
Q psy3899         636 INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLT  715 (923)
Q Consensus       636 ~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t  715 (923)
                      .|+|..|-+|.|||.+|+..+ +.+|++.|+..|||++..|+ .|++++..|+..|+. +|+..+++-++...+|+.-+|
T Consensus       217 vdVNvyDwNGgTpLlyAvrgn-hvkcve~Ll~sGAd~t~e~d-sGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~  293 (296)
T KOG0502|consen  217 VDVNVYDWNGGTPLLYAVRGN-HVKCVESLLNSGADVTQEDD-SGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRT  293 (296)
T ss_pred             CCcceeccCCCceeeeeecCC-hHHHHHHHHhcCCCcccccc-cCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCC
Confidence            999999999999999999666 99999999999999999999 999999999999998 899999988888888888888


Q ss_pred             HHH
Q psy3899         716 PFM  718 (923)
Q Consensus       716 pl~  718 (923)
                      |+|
T Consensus       294 ~~~  296 (296)
T KOG0502|consen  294 PLH  296 (296)
T ss_pred             CCC
Confidence            764

>KOG0507|consensus

Probab=99.87  E-value=2.3e-22  Score=219.75  Aligned_cols=211  Identities=23%  Similarity=0.300  Sum_probs=190.7

Q ss_pred             CCCCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCc
Q psy3899         478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNR  557 (923)
Q Consensus       478 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~  557 (923)
                      +..|.|+||.|+..+.                               .++++.+++..+-++..|..|.+|||+|+.+|+
T Consensus        46 d~~gfTalhha~Lng~-------------------------------~~is~llle~ea~ldl~d~kg~~plhlaaw~g~   94 (854)
T KOG0507|consen   46 DYSGFTLLHHAVLNGQ-------------------------------NQISKLLLDYEALLDLCDTKGILPLHLAAWNGN   94 (854)
T ss_pred             CccchhHHHHHHhcCc-------------------------------hHHHHHHhcchhhhhhhhccCcceEEehhhcCc
Confidence            4567888888887776                               788888888888888899999999999999999


Q ss_pred             HHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCC
Q psy3899         558 IEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN  637 (923)
Q Consensus       558 ~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  637 (923)
                      .++++.++.++..+|..... |.||||.|+..||.+++.+|+++|+|+-.+|+.+.|+|.+|++.|..++++.|+....+
T Consensus        95 ~e~vkmll~q~d~~na~~~e-~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~  173 (854)
T KOG0507|consen   95 LEIVKMLLLQTDILNAVNIE-NETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFP  173 (854)
T ss_pred             chHHHHHHhcccCCCccccc-CcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccc
Confidence            99999999999777776555 99999999999999999999999999999999999999999999999999999987433


Q ss_pred             C--------CccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q psy3899         638 V--------NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIP  709 (923)
Q Consensus       638 ~--------~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~  709 (923)
                      +        ..++-.+.+|||.|+.+| +.++++.|++.|.|+|....  .-|+||.|+..|..++|++|++.|.+.+++
T Consensus       174 ~~~~~~~~~~~~~~~~~~plHlaakng-h~~~~~~ll~ag~din~~t~--~gtalheaalcgk~evvr~ll~~gin~h~~  250 (854)
T KOG0507|consen  174 VQSSLRVGDIKRPFPAIYPLHLAAKNG-HVECMQALLEAGFDINYTTE--DGTALHEAALCGKAEVVRFLLEIGINTHIK  250 (854)
T ss_pred             hhhcccCCCCCCCCCCcCCcchhhhcc-hHHHHHHHHhcCCCcccccc--cchhhhhHhhcCcchhhhHHHhhccccccc
Confidence            2        234567888999999998 89999999999999999875  569999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHhc
Q psy3899         710 NAQGLTPFMLLEEN  723 (923)
Q Consensus       710 d~~g~tpl~~a~~~  723 (923)
                      |.+|+|+|++....
T Consensus       251 n~~~qtaldil~d~  264 (854)
T KOG0507|consen  251 NQHGQTALDIIIDL  264 (854)
T ss_pred             cccchHHHHHHHhc
Confidence            99999999998764

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=1.2e-21  Score=191.88  Aligned_cols=132  Identities=23%  Similarity=0.297  Sum_probs=115.5

Q ss_pred             cccccCCCCccHHHHHHHcCCHHHHHHHHH------cCCCCCccCCCCChHHHHHHHhCc----HHHHHHHHHCCCcccc
Q psy3899          11 VDAIGGDLQATPLHWATRQGHLDSVVLLIQ------HGADPTLMDSEGSTCIHQAAQFGH----TRIVAYLVAKGINVNL   80 (923)
Q Consensus        11 ~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~------~ga~~~~~d~~g~TpLh~Aa~~g~----~~iv~~Ll~~ga~vn~   80 (923)
                      ++.++.. |.||||+||+.|+.++|+.|+.      .|++++.+|..|+||||+|+..|+    .+++++|+++|+++|.
T Consensus        14 ~~~~~~~-g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~   92 (169)
T PHA02741         14 IAEKNSE-GENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINA   92 (169)
T ss_pred             hhccccC-CCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCC
Confidence            4556555 9999999999999999998854      368899999999999999999998    5889999999999999


Q ss_pred             cCC-CCCcHHHHHHHhcCCCchhHHHHh-cCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCC
Q psy3899          81 QDR-NGMTALMWSAYKVFSLDPTRLLIT-FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS  145 (923)
Q Consensus        81 ~d~-~g~TpL~~Aa~~g~~~~vv~lLl~-~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~  145 (923)
                      +|. +|.||||+|+..+ ..+++++|++ .|++++..|. .|.||||+|+..|+.+++++|++.++.
T Consensus        93 ~~~~~g~TpLh~A~~~~-~~~iv~~Ll~~~g~~~~~~n~-~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         93 QEMLEGDTALHLAAHRR-DHDLAEWLCCQPGIDLHFCNA-DNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCcCCCCCHHHHHHHcC-CHHHHHHHHhCCCCCCCcCCC-CCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            985 8999999999998 4899999997 5999999988 999999999999999999999988654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.86  E-value=2.3e-21  Score=188.75  Aligned_cols=144  Identities=19%  Similarity=0.263  Sum_probs=101.8

Q ss_pred             CCcccccCCCCCchHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHH---HHHHHHHcCCCCCc
Q psy3899         568 GAIVDAIGGDLQATPLHWATRQGHL----DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR---IVAYLVAKGINVNL  640 (923)
Q Consensus       568 g~~~~~~~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~---~v~~Ll~~g~~~~~  640 (923)
                      |++++..+.. +.++||.||+.|+.    +++++|++.|++++.+|..|+||||+|+..|+.+   ++++|++.|++++.
T Consensus        10 ~~~~~~~~~~-~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743         10 NLGAVEIDED-EQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             chHHhhhccC-CCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            4444433333 55667777777766    4555666677777777777777777777776644   36777777777777


Q ss_pred             cC-CCCCcHHHHHHHhhCCcchHHHHHh-cCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Q psy3899         641 QD-RNGMTALMWSAYKVFSLDPTRLLIT-FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGL  714 (923)
Q Consensus       641 ~d-~~g~t~Lh~a~~~~~~~~~~~~Ll~-~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~  714 (923)
                      +| ..|.||||+|+..+ +.+++++|+. .|++++.+|. .|.||||+|+..++.+++++|+++|++++.++..|.
T Consensus        89 ~d~~~g~TpLh~A~~~g-~~~iv~~Ll~~~gad~~~~d~-~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         89 RELGTGNTLLHIAASTK-NYELAEWLCRQLGVNLGAINY-QHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             CCCCCCCcHHHHHHHhC-CHHHHHHHHhccCCCccCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            76 46777777777776 6777777774 6777777776 788888888888888888888888888877777664

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.85  E-value=6.7e-21  Score=199.07  Aligned_cols=154  Identities=16%  Similarity=0.141  Sum_probs=131.8

Q ss_pred             cccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccC----CCCChHHHHHHHhCcHHHHHHHHHCCCccccc-CCCC
Q psy3899          11 VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMD----SEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ-DRNG   85 (923)
Q Consensus        11 ~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d----~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~-d~~g   85 (923)
                      +-.+|+..-.++||.|+..|+.++|++|+++|++++.++    ..|.||||+|+..|+.+++++|+++||++|.+ +..|
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            344565634567788888899999999999999999974    58999999999999999999999999999997 4679


Q ss_pred             CcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcC
Q psy3899          86 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIG  165 (923)
Q Consensus        86 ~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~  165 (923)
                      .||||+|+..|+ .+++++|+++|++++.+|. .|.||||+|+..++.+++..+.+.  .   .+..+.+|++++.   +
T Consensus       105 ~TpLh~Aa~~~~-~eivklLL~~GAdin~kd~-~G~TpL~~A~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~---n  174 (300)
T PHA02884        105 ITPLYISVLHGC-LKCLEILLSYGADINIQTN-DMVTPIELALMICNNFLAFMICDN--E---ISNFYKHPKKILI---N  174 (300)
T ss_pred             CCHHHHHHHcCC-HHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHhCChhHHHHhcCC--c---ccccccChhhhhc---c
Confidence            999999999995 9999999999999999999 999999999999999988666532  2   4566778888753   4


Q ss_pred             CCCCchhhhhHHHH
Q psy3899         166 APWLGKATVDKITE  179 (923)
Q Consensus       166 ~~~~~~~~v~~L~~  179 (923)
                      .+     ++++|+.
T Consensus       175 ~e-----i~~~Lis  183 (300)
T PHA02884        175 FD-----ILKILVS  183 (300)
T ss_pred             HH-----HHHHHHH
Confidence            55     8888877

>KOG0505|consensus

Probab=99.84  E-value=8.1e-21  Score=201.36  Aligned_cols=107  Identities=27%  Similarity=0.348  Sum_probs=96.8

Q ss_pred             HHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHH
Q psy3899          55 CIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV  134 (923)
Q Consensus        55 pLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~  134 (923)
                      .+--|+..|..+=|+.|+..|++.|..+.+|.|+||-+|...+ .+||++|+++|+++|.+|+ .|+||||.|+.+|+.+
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~-~e~v~~l~e~ga~Vn~~d~-e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDN-LEMVKFLVENGANVNAQDN-EGWTPLHAAASCGYLN  120 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhccc-HHHHHHHHHhcCCcccccc-ccCCcchhhcccccHH
Confidence            3556778889999999999999999999999999999999884 9999999999999999999 9999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCChHHHHHhh
Q psy3899         135 AITTLVSHTSSLEIPNAQGLTPFMLLEEN  163 (923)
Q Consensus       135 iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~  163 (923)
                      ++++|+++|+++...|.+|..|+.++...
T Consensus       121 i~~~li~~gA~~~avNsdg~~P~dl~e~e  149 (527)
T KOG0505|consen  121 IVEYLIQHGANLLAVNSDGNMPYDLAEDE  149 (527)
T ss_pred             HHHHHHHhhhhhhhccCCCCCccccccCc
Confidence            99999999999999999999998887544

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=6e-21  Score=184.28  Aligned_cols=133  Identities=17%  Similarity=0.205  Sum_probs=113.7

Q ss_pred             ccccccCCCCccHHHHHHHcCCHHHHHHHHHcCC--C-----CCccCCCCChHHHHHHHhCcH---HHHHHHHHCCCccc
Q psy3899          10 IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA--D-----PTLMDSEGSTCIHQAAQFGHT---RIVAYLVAKGINVN   79 (923)
Q Consensus        10 ~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga--~-----~~~~d~~g~TpLh~Aa~~g~~---~iv~~Ll~~ga~vn   79 (923)
                      ..+..|.. |.||||+||+.|+.  +.++...+.  +     ++.+|.+|+||||+|+..|+.   +++++|+++|+++|
T Consensus         9 ~~~~~d~~-g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin   85 (154)
T PHA02736          9 FASEPDIE-GENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN   85 (154)
T ss_pred             HHHhcCCC-CCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc
Confidence            45566655 99999999999983  444443322  2     335689999999999999987   47899999999999


Q ss_pred             ccC-CCCCcHHHHHHHhcCCCchhHHHHh-cCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCC
Q psy3899          80 LQD-RNGMTALMWSAYKVFSLDPTRLLIT-FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE  147 (923)
Q Consensus        80 ~~d-~~g~TpL~~Aa~~g~~~~vv~lLl~-~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~  147 (923)
                      .+| .+|.||||+|+..| +.+++++|++ .|++++.+|. .|.||||+|+..|+.+++++|+++|++.+
T Consensus        86 ~~~~~~g~T~Lh~A~~~~-~~~i~~~Ll~~~g~d~n~~~~-~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         86 GKERVFGNTPLHIAVYTQ-NYELATWLCNQPGVNMEILNY-AFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             ccCCCCCCcHHHHHHHhC-CHHHHHHHHhCCCCCCccccC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            998 48999999999999 5999999997 5999999999 99999999999999999999999998764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.83  E-value=5.4e-20  Score=192.29  Aligned_cols=157  Identities=17%  Similarity=0.162  Sum_probs=134.3

Q ss_pred             CCCCCCCCCc-HhHHHHHcCcHHHHHHHHhCCCcccccC---CCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCC
Q psy3899         538 VNEPDSETVT-LLHWAAINNRIEIMKYFISQGAIVDAIG---GDLQATPLHWATRQGHLDSVVLLIQHGADPTLM-DSEG  612 (923)
Q Consensus       538 ~~~~~~~g~t-~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~---~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g  612 (923)
                      +..+|..|.| +||.|+..|+.+++++|+++|++++...   +..|.||||+|+..|+.+++++|+++|+|++.+ +..|
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            4556766665 5667777899999999999999999763   346999999999999999999999999999986 4679


Q ss_pred             ChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCC
Q psy3899         613 STCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN  692 (923)
Q Consensus       613 ~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~  692 (923)
                      .||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..+ +.+++.++.  |..   .+. .+.+|++++   ++
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~-~~~~~~~~~--~~~---~~~-~~~~~~~~~---~n  174 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMIC-NNFLAFMIC--DNE---ISN-FYKHPKKIL---IN  174 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC-ChhHHHHhc--CCc---ccc-cccChhhhh---cc
Confidence            99999999999999999999999999999999999999999876 566665553  433   344 788999976   47


Q ss_pred             HHHHHHHHHCCC
Q psy3899         693 HVAITTLVSHTS  704 (923)
Q Consensus       693 ~~~v~~Ll~~ga  704 (923)
                      .+++++|++++.
T Consensus       175 ~ei~~~Lish~v  186 (300)
T PHA02884        175 FDILKILVSHFI  186 (300)
T ss_pred             HHHHHHHHHHHH
Confidence            899999999987

>KOG0512|consensus

Probab=99.83  E-value=3.1e-20  Score=167.00  Aligned_cols=142  Identities=25%  Similarity=0.261  Sum_probs=128.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCC
Q psy3899          21 TPLHWATRQGHLDSVVLLIQHGAD-PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSL   99 (923)
Q Consensus        21 T~Lh~Aa~~g~~~~V~~Ll~~ga~-~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~   99 (923)
                      --+.+|+..+....|+.||+..++ +|.+|.+|.||||-|+++||.+||+.|+..||+++.+...|+||||-||... +.
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWn-N~  143 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWN-NF  143 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhccc-ch
Confidence            457899999999999999998765 8999999999999999999999999999999999999999999999999988 69


Q ss_pred             chhHHHHhcCCCcccccccCCCcHHHHHHHhCcH-HHHHHHHh-cCCCCCCCCCCCCChHHHHHhhc
Q psy3899         100 DPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH-VAITTLVS-HTSSLEIPNAQGLTPFMLLEENI  164 (923)
Q Consensus       100 ~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~-~iv~~Ll~-~ga~~~~~~~~g~t~L~~A~~~g  164 (923)
                      +++-+|+++|+|+|+... ...||||.||.+.+. ..+.+|+. .+..+-.++..+.||+++|-+.+
T Consensus       144 ~va~~LLqhgaDVnA~t~-g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  144 EVAGRLLQHGADVNAQTK-GLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             hHHHHHHhccCccccccc-ccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            999999999999999988 778999999987765 45666664 45788889999999999999887

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=2.2e-20  Score=182.77  Aligned_cols=129  Identities=26%  Similarity=0.330  Sum_probs=118.5

Q ss_pred             CccCCCCChHHHHHHHhCcHHHHHHHHH------CCCcccccCCCCCcHHHHHHHhcCC---CchhHHHHhcCCCccccc
Q psy3899          46 TLMDSEGSTCIHQAAQFGHTRIVAYLVA------KGINVNLQDRNGMTALMWSAYKVFS---LDPTRLLITFGASTTIQD  116 (923)
Q Consensus        46 ~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~------~ga~vn~~d~~g~TpL~~Aa~~g~~---~~vv~lLl~~ga~~~~~d  116 (923)
                      +.+|..|.||||+|++.|+.++++.|++      .|++++.+|..|.||||+|+..|+.   .+++++|++.|++++.++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~   94 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE   94 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence            4678899999999999999999999864      3689999999999999999998853   488999999999999987


Q ss_pred             ccCCCcHHHHHHHhCcHHHHHHHHh-cCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899         117 KIHGNVALHWAIYAKNHVAITTLVS-HTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  179 (923)
Q Consensus       117 ~~~g~T~L~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~  179 (923)
                      ...|.||||+|+..|+.+++++|++ .|++++..|..|.||||+|...|+.+     ++++|++
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~-----iv~~L~~  153 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVA-----MMQILRE  153 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHH-----HHHHHHH
Confidence            3379999999999999999999998 59999999999999999999999999     9999998

>KOG0514|consensus

Probab=99.81  E-value=6.9e-20  Score=183.94  Aligned_cols=145  Identities=26%  Similarity=0.339  Sum_probs=70.3

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCChHHHHHHHc-----CcHHHHHHHHHcCCCCCccC-CCCCcHHHH
Q psy3899         579 QATPLHWATRQGHLDSVVLLIQHG-ADPTLMDSEGSTCIHQAAQF-----GHTRIVAYLVAKGINVNLQD-RNGMTALMW  651 (923)
Q Consensus       579 g~t~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~Lh~A~~~-----~~~~~v~~Ll~~g~~~~~~d-~~g~t~Lh~  651 (923)
                      |+|+||||+..++.++|+.||+.| ++++.+|+-|+||+++|+..     .+..+|..|..- .|+|.+- ..|+|+||+
T Consensus       268 GNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m-gnVNaKAsQ~gQTALML  346 (452)
T KOG0514|consen  268 GNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM-GDVNAKASQHGQTALML  346 (452)
T ss_pred             CCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc-cCcchhhhhhcchhhhh
Confidence            444444444444444444444432 34444444444444444321     223344444333 2334332 235555555


Q ss_pred             HHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHhccCC
Q psy3899         652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH-TSSLEIPNAQGLTPFMLLEENIGA  726 (923)
Q Consensus       652 a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpl~~a~~~~~~  726 (923)
                      |+..| ..++++.|+..|||+|.||+ +|.|+|++|+..|+.|+|++||.. ++|....|.+|-|+|.+|-+.+++
T Consensus       347 AVSHG-r~d~vk~LLacgAdVNiQDd-DGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~  420 (452)
T KOG0514|consen  347 AVSHG-RVDMVKALLACGADVNIQDD-DGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHR  420 (452)
T ss_pred             hhhcC-cHHHHHHHHHccCCCccccC-CccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCch
Confidence            55555 55555555555555555555 555555555555555555555543 345555555555555555555444

>KOG0195|consensus

Probab=99.81  E-value=2e-20  Score=181.37  Aligned_cols=143  Identities=27%  Similarity=0.333  Sum_probs=128.6

Q ss_pred             HHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHH
Q psy3899          26 ATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRL  104 (923)
Q Consensus        26 Aa~~g~~~~V~~Ll~~-ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~l  104 (923)
                      =|+.|+.-.|++-|+. .-|.|.-|..|.+|||+||+.||..+|+.|+.+|+.+|..+....||||+||..|| -++|+.
T Consensus         7 wcregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahgh-rdivqk   85 (448)
T KOG0195|consen    7 WCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGH-RDIVQK   85 (448)
T ss_pred             hhhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhccc-HHHHHH
Confidence            3677887778877765 67888999999999999999999999999999999999999999999999999997 899999


Q ss_pred             HHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899         105 LITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  179 (923)
Q Consensus       105 Ll~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~  179 (923)
                      |+++.+|+|+.+. +|+|||||||.-|+..+.+-|++.|+-+++.|+.|.|||..|--.         +-+.|++
T Consensus        86 ll~~kadvnavne-hgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~---------l~~~l~e  150 (448)
T KOG0195|consen   86 LLSRKADVNAVNE-HGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPM---------LKNTLLE  150 (448)
T ss_pred             HHHHhcccchhhc-cCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchH---------HHHHHHH
Confidence            9999999999999 999999999999999999999999999999999999999987544         5566666

>KOG0512|consensus

Probab=99.80  E-value=3.2e-19  Score=160.54  Aligned_cols=143  Identities=24%  Similarity=0.255  Sum_probs=118.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCc
Q psy3899         581 TPLHWATRQGHLDSVVLLIQHGAD-PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSL  659 (923)
Q Consensus       581 t~Lh~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~  659 (923)
                      .-+.||+..+.+.-|+.|++..++ +|.+|.+|+||||-|+++|+.+||+.|+..|++++.+...|+||||-||.-+ +.
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWn-N~  143 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWN-NF  143 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhccc-ch
Confidence            346688888888888888876555 7888899999999999999999999999999999999999999999888776 88


Q ss_pred             chHHHHHhcCCCCcccccCCCChHHHHHHHcCCHH-HHHHHH-HCCCCCCCCCCCCCCHHHHHHhccC
Q psy3899         660 DPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV-AITTLV-SHTSSLEIPNAQGLTPFMLLEENIG  725 (923)
Q Consensus       660 ~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~-~v~~Ll-~~gad~~~~d~~g~tpl~~a~~~~~  725 (923)
                      +++.+|+++|+|+|++.+ ...||||+||...+.. .+.+|+ ..+.++..++..+.||+++|.+-+.
T Consensus       144 ~va~~LLqhgaDVnA~t~-g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  144 EVAGRLLQHGADVNAQTK-GLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             hHHHHHHhccCccccccc-ccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhh
Confidence            899999999999999888 7889999999776654 445544 5577888999999999999988643

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.79  E-value=2.7e-19  Score=172.76  Aligned_cols=96  Identities=16%  Similarity=0.200  Sum_probs=45.7

Q ss_pred             CCCCChHHHHHHHcCcH---HHHHHHHHcCCCCCccC-CCCCcHHHHHHHhhCCcchHHHHHh-cCCCCcccccCCCChH
Q psy3899         609 DSEGSTCIHQAAQFGHT---RIVAYLVAKGINVNLQD-RNGMTALMWSAYKVFSLDPTRLLIT-FGASTTIQDKIHGNVA  683 (923)
Q Consensus       609 d~~g~t~Lh~A~~~~~~---~~v~~Ll~~g~~~~~~d-~~g~t~Lh~a~~~~~~~~~~~~Ll~-~ga~~~~~d~~~g~Tp  683 (923)
                      |..|.||||+|+..|+.   +++++|++.|++++.+| ..|.||||+|+..+ +.+++++|+. .|++++.+|. .|+||
T Consensus        52 d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~-~~~i~~~Ll~~~g~d~n~~~~-~g~tp  129 (154)
T PHA02736         52 NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQ-NYELATWLCNQPGVNMEILNY-AFKTP  129 (154)
T ss_pred             cCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhC-CHHHHHHHHhCCCCCCccccC-CCCCH
Confidence            44444444444444433   23444444444444444 24455555444444 4444444444 2455554444 45555


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC
Q psy3899         684 LHWAIYAKNHVAITTLVSHTSSL  706 (923)
Q Consensus       684 Lh~A~~~~~~~~v~~Ll~~gad~  706 (923)
                      ||+|+..|+.+++++|+++|++.
T Consensus       130 L~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736        130 YYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC
Confidence            55555555555555555555443

>KOG0195|consensus

Probab=99.78  E-value=6e-19  Score=171.23  Aligned_cols=139  Identities=27%  Similarity=0.371  Sum_probs=119.1

Q ss_pred             ccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCC
Q psy3899           6 SQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG   85 (923)
Q Consensus         6 ~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g   85 (923)
                      +.--|.|.-| +.|-+||||||..|+..+|+.||+.|+.+|..+.-..||||+||.+||.++|+.|+++.+|+|..+..|
T Consensus        22 ~tehdln~gd-dhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehg  100 (448)
T KOG0195|consen   22 DTEHDLNVGD-DHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHG  100 (448)
T ss_pred             Cccccccccc-ccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccC
Confidence            3444677655 559999999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             CcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCC
Q psy3899          86 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE  147 (923)
Q Consensus        86 ~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~  147 (923)
                      +|||||||..|+ ..+.+-|+..||.++..+. .|.|||.-|--.-...+.+.--++|.+++
T Consensus       101 ntplhyacfwgy-dqiaedli~~ga~v~icnk-~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  101 NTPLHYACFWGY-DQIAEDLISCGAAVNICNK-KGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             CCchhhhhhhcH-HHHHHHHHhccceeeeccc-CCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            999999999996 8899999999999999999 99999998753322222233334566554

>KOG3676|consensus

Probab=99.74  E-value=4.5e-17  Score=181.62  Aligned_cols=186  Identities=22%  Similarity=0.228  Sum_probs=155.2

Q ss_pred             CCCCCCCCCCCcHhHHHHHc---CcHHHHHHHHhCCCccc----ccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q psy3899         536 QDVNEPDSETVTLLHWAAIN---NRIEIMKYFISQGAIVD----AIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM  608 (923)
Q Consensus       536 ~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~----~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~  608 (923)
                      .+++.+..-|+|.||.|..+   ++-++++.|++.-....    ..+...|.||||.|+.+.+.++|++|++.|||++.+
T Consensus       134 w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aR  213 (782)
T KOG3676|consen  134 WKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHAR  213 (782)
T ss_pred             hccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhH
Confidence            57788888999999999984   45689999998543321    223456999999999999999999999999998874


Q ss_pred             --------CC---------------CCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHH
Q psy3899         609 --------DS---------------EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLL  665 (923)
Q Consensus       609 --------d~---------------~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~L  665 (923)
                              +.               .|..||..||-.++.+++++|+++|+|++.+|.+|+|.||..+..- ..++..++
T Consensus       214 a~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~-~~~My~~~  292 (782)
T KOG3676|consen  214 ACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHF-VTEMYDLA  292 (782)
T ss_pred             hhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHH-HHHHHHHH
Confidence                    11               3678999999999999999999999999999999999999888775 88999999


Q ss_pred             HhcCCC--CcccccCCCChHHHHHHHcCCHHHHHHHHHC-C-------C------CCCCCCC--CCCCHHHHHHhc
Q psy3899         666 ITFGAS--TTIQDKIHGNVALHWAIYAKNHVAITTLVSH-T-------S------SLEIPNA--QGLTPFMLLEEN  723 (923)
Q Consensus       666 l~~ga~--~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~-g-------a------d~~~~d~--~g~tpl~~a~~~  723 (923)
                      +++|++  ...++. +|-|||-+||+-|+.++.+.+++. +       .      +++..|.  +..+.|.+++.+
T Consensus       293 L~~ga~~l~~v~N~-qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg  367 (782)
T KOG3676|consen  293 LELGANALEHVRNN-QGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYG  367 (782)
T ss_pred             HhcCCCcccccccc-CCCChHHHHHHhhhHHHHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhcC
Confidence            999999  777887 999999999999999999999988 1       1      3444443  345677776655

>KOG3676|consensus

Probab=99.72  E-value=1.4e-17  Score=185.61  Aligned_cols=163  Identities=24%  Similarity=0.260  Sum_probs=142.3

Q ss_pred             cccccccCCCCccHHHHHHH---cCCHHHHHHHHHcCCC-CC---c-cCCCCChHHHHHHHhCcHHHHHHHHHCCCcccc
Q psy3899           9 AIVDAIGGDLQATPLHWATR---QGHLDSVVLLIQHGAD-PT---L-MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL   80 (923)
Q Consensus         9 ~~~n~~~~~~g~T~Lh~Aa~---~g~~~~V~~Ll~~ga~-~~---~-~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~   80 (923)
                      .+++.+. ..|+|.||.|.-   .++-++++.|++.-.. +|   . -.-.|+||||+|+.+.+.++|++|++.||||++
T Consensus       134 w~~~~RG-a~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~a  212 (782)
T KOG3676|consen  134 WKLNERG-ATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHA  212 (782)
T ss_pred             hcccccc-chhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhh
Confidence            4666664 559999999986   4566999999976211 11   1 123799999999999999999999999999987


Q ss_pred             cCC-----------------------CCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHH
Q psy3899          81 QDR-----------------------NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT  137 (923)
Q Consensus        81 ~d~-----------------------~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~  137 (923)
                      +..                       -|+.||.+||.-+ +.+++++|+++|||++++|. .|+|.||..+.+-..++-+
T Consensus       213 Ra~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~n-q~eivrlLl~~gAd~~aqDS-~GNTVLH~lVi~~~~~My~  290 (782)
T KOG3676|consen  213 RACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTN-QPEIVRLLLAHGADPNAQDS-NGNTVLHMLVIHFVTEMYD  290 (782)
T ss_pred             HhhccccCcccccccccccCCcceeeeccCchHHHHHcC-CHHHHHHHHhcCCCCCcccc-CCChHHHHHHHHHHHHHHH
Confidence            642                       1789999999999 69999999999999999999 9999999999999999999


Q ss_pred             HHHhcCCC--CCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899         138 TLVSHTSS--LEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  179 (923)
Q Consensus       138 ~Ll~~ga~--~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~  179 (923)
                      +++++|++  ...+|..|.|||.+|++.|+.+     +.+++++
T Consensus       291 ~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~e-----mf~~ile  329 (782)
T KOG3676|consen  291 LALELGANALEHVRNNQGLTPLTLAAKLGKKE-----MFQHILE  329 (782)
T ss_pred             HHHhcCCCccccccccCCCChHHHHHHhhhHH-----HHHHHHH
Confidence            99999998  8899999999999999999999     9999887

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.72  E-value=2.4e-17  Score=142.87  Aligned_cols=88  Identities=40%  Similarity=0.642  Sum_probs=52.2

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchh
Q psy3899          23 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPT  102 (923)
Q Consensus        23 Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv  102 (923)
                      ||+||+.|+.++++.|++.+.+++.    |+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+.+| +.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENG-NLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTT-HHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcC-CHHHH
Confidence            5666666666666666666555554    556666666666666666666666666666666666666666655 35666


Q ss_pred             HHHHhcCCCcccc
Q psy3899         103 RLLITFGASTTIQ  115 (923)
Q Consensus       103 ~lLl~~ga~~~~~  115 (923)
                      ++|+++|++++.+
T Consensus        76 ~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   76 KLLLEHGADVNIR   88 (89)
T ss_dssp             HHHHHTTT-TTSS
T ss_pred             HHHHHcCCCCCCc
Confidence            6666666665554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.70  E-value=5.6e-17  Score=140.56  Aligned_cols=89  Identities=39%  Similarity=0.575  Sum_probs=82.9

Q ss_pred             HHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHH
Q psy3899          56 IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVA  135 (923)
Q Consensus        56 Lh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~i  135 (923)
                      ||+||+.|+.+++++|++.+.+++.    |+||||+||..| +.+++++|+++|++++.+|. .|.||||+|+.+|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~-~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENG-NLEIVKLLLENGADINSQDK-NGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTT-THHHHHHHHHTTTCTT-BST-TSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcC-CHHHHHHHHHhcccccccCC-CCCCHHHHHHHcCCHHH
Confidence            7999999999999999999988887    899999999999 59999999999999999998 99999999999999999


Q ss_pred             HHHHHhcCCCCCCCC
Q psy3899         136 ITTLVSHTSSLEIPN  150 (923)
Q Consensus       136 v~~Ll~~ga~~~~~~  150 (923)
                      +++|+++|++++.+|
T Consensus        75 ~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   75 VKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHTTT-TTSS-
T ss_pred             HHHHHHcCCCCCCcC
Confidence            999999999998875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.69  E-value=2.2e-16  Score=146.74  Aligned_cols=121  Identities=39%  Similarity=0.559  Sum_probs=109.6

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcC
Q psy3899          18 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF   97 (923)
Q Consensus        18 ~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~   97 (923)
                      .|.||||+|+..|+.++++.|++.|.+.+.++..|.||||.|+..++.+++++|++.|++++..+..|.||+|+|+..++
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~   85 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGN   85 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCc
Confidence            38899999999999999999999998888889999999999999999999999999998888888899999999999884


Q ss_pred             CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHH
Q psy3899          98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV  140 (923)
Q Consensus        98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll  140 (923)
                       .+++++|+++|.+++..+. .|.||+++|+..++.+++++|+
T Consensus        86 -~~~~~~L~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          86 -LDVVKLLLKHGADVNARDK-DGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             -HHHHHHHHHcCCCCcccCC-CCCCHHHHHHhcCCHHHHHHhC
Confidence             9999999999988888887 8999999999999999998874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.66  E-value=7.4e-16  Score=143.15  Aligned_cols=124  Identities=31%  Similarity=0.441  Sum_probs=116.7

Q ss_pred             ccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHH
Q psy3899          47 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW  126 (923)
Q Consensus        47 ~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~  126 (923)
                      .+|.+|.||||.|+..|+.+++++|++.|++.+..+..|.||||.|+..+ +.+++++|++.|++++..+. .|.||+|+
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~-~~~~~l~~   79 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNG-HLEIVKLLLEKGADVNARDK-DGNTPLHL   79 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCccccCC-CCCCHHHH
Confidence            35678999999999999999999999999999999999999999999999 58999999999999999987 99999999


Q ss_pred             HHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHH
Q psy3899         127 AIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI  177 (923)
Q Consensus       127 A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L  177 (923)
                      |+..++.+++++|++++.+.+..+..|.||++.|...++.+     ++++|
T Consensus        80 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~L  125 (126)
T cd00204          80 AARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLE-----VVKLL  125 (126)
T ss_pred             HHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHH-----HHHHh
Confidence            99999999999999999999999999999999999998877     77765

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.55  E-value=2.2e-14  Score=148.92  Aligned_cols=124  Identities=31%  Similarity=0.374  Sum_probs=114.2

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCc-----HHHHHHHHHCCC---cccccCCCCCcHH
Q psy3899          18 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH-----TRIVAYLVAKGI---NVNLQDRNGMTAL   89 (923)
Q Consensus        18 ~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~-----~~iv~~Ll~~ga---~vn~~d~~g~TpL   89 (923)
                      .+.+++|.|+..|..+.++.+++.|++++.+|..|.||||+|+..|+     .++++.|++.|+   ..+.+|..|.|||
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl  151 (235)
T COG0666          72 DGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPL  151 (235)
T ss_pred             cccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchh
Confidence            37899999999999999999999999999999999999999999999     999999999999   5666699999999


Q ss_pred             HHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcC
Q psy3899          90 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT  143 (923)
Q Consensus        90 ~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~g  143 (923)
                      |+|+..|+ .+++++|++.|++++..+. .|.|+++.|+..|+.++++.+++.+
T Consensus       152 ~~A~~~~~-~~~~~~ll~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         152 HWAALNGD-ADIVELLLEAGADPNSRNS-YGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HHHHHcCc-hHHHHHHHhcCCCCccccc-CCCcchhhhcccchHHHHHHHHhcC
Confidence            99999995 7999999999999999988 9999999999999999999999875

>KOG1315|consensus

Probab=99.54  E-value=1.7e-15  Score=155.87  Aligned_cols=107  Identities=22%  Similarity=0.447  Sum_probs=76.5

Q ss_pred             cchhHHHHHhhhheeeeeeeeecc------hhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchhHHHHHH------
Q psy3899         815 ILPLPVYFATKFWIYITWLFWITP------VVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYII------  882 (923)
Q Consensus       815 ~~p~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~dPG~~~~~~~~~~~~~~------  882 (923)
                      .+|..+..+...|.|+++++.+.-      ....+..++++.+.+++.|+|++++++|||.+|.......+...      
T Consensus        13 ~~~~~~i~~~~~~~yy~~v~~~c~~~i~~~~~~~~~ll~~~~ll~m~~~sy~~~vf~~pg~vp~~~~~~~~~~~~~~~~~   92 (307)
T KOG1315|consen   13 WIPVLIILLVIGWTYYVYVAVLCILSISLTIPSVLLLLLFHLLLIMFLWSYFRTVFTDPGRVPDSYRPSVEDEDSLENGS   92 (307)
T ss_pred             chhheeeeeeEEEEEEEeehhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHheeEecCCCCccccCCCcCccccccccC
Confidence            455556666677777777664432      34567778888999999999999999999999854321111100      


Q ss_pred             ------HHHhcCCCCCcccccccCCCcCCCCCCCccccHhhhccc
Q psy3899         883 ------ELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKLI  921 (923)
Q Consensus       883 ------~~~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~k~~  921 (923)
                            .....+.....|+|.+|+.+|||||||||+|+|||+||=
T Consensus        93 ~~~~~~~~~~~~~~g~~R~C~kC~~iKPdRaHHCsvC~rCvLKmD  137 (307)
T KOG1315|consen   93 DNERDLPGYTRTSDGAVRYCDKCKCIKPDRAHHCSVCNRCVLKMD  137 (307)
T ss_pred             cccccceeeEecCCCCceeecccccccCCccccchhhhhhhhccc
Confidence                  000112233679999999999999999999999999993

>KOG4214|consensus

Probab=99.50  E-value=5.2e-14  Score=113.29  Aligned_cols=102  Identities=26%  Similarity=0.508  Sum_probs=79.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCc
Q psy3899          21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLD  100 (923)
Q Consensus        21 T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~  100 (923)
                      --..|++.+|..|-|+.....|.++|..= .|+||||+||-.|..+++++|+.-|++++.+|+.|-|||..|+-.|| .+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH-~~   81 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGH-RD   81 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhh-HH
Confidence            34577888888888888888887777543 78888888888888888888888888888888888888888888886 78


Q ss_pred             hhHHHHhcCCCcccccccCCCcHHH
Q psy3899         101 PTRLLITFGASTTIQDKIHGNVALH  125 (923)
Q Consensus       101 vv~lLl~~ga~~~~~d~~~g~T~L~  125 (923)
                      +|++|+++||+-..+.. +|.+.+.
T Consensus        82 cVklLL~~GAdrt~~~P-dG~~~~e  105 (117)
T KOG4214|consen   82 CVKLLLQNGADRTIHAP-DGTALIE  105 (117)
T ss_pred             HHHHHHHcCcccceeCC-CchhHHh
Confidence            88888888888777666 6655543

>KOG4214|consensus

Probab=99.50  E-value=5.4e-14  Score=113.20  Aligned_cols=104  Identities=25%  Similarity=0.269  Sum_probs=64.7

Q ss_pred             HHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHH
Q psy3899         616 IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVA  695 (923)
Q Consensus       616 Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~  695 (923)
                      +..++++|..+-|+-....|.++|..- .|+||||+|+..| ..+++++|+..||+++.+|+ .|-|||--|+..|+.++
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~G-Ql~ilefli~iGA~i~~kDK-ygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYG-QLSILEFLISIGANIQDKDK-YGITPLLSAVWEGHRDC   82 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcc-hHHHHHHHHHhccccCCccc-cCCcHHHHHHHHhhHHH
Confidence            345555666666665555555555433 5666666666665 56666666666666666666 66666666666666666


Q ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHh
Q psy3899         696 ITTLVSHTSSLEIPNAQGLTPFMLLEE  722 (923)
Q Consensus       696 v~~Ll~~gad~~~~d~~g~tpl~~a~~  722 (923)
                      |++||+.|||..++..+|.+.++-+.+
T Consensus        83 VklLL~~GAdrt~~~PdG~~~~eate~  109 (117)
T KOG4214|consen   83 VKLLLQNGADRTIHAPDGTALIEATEE  109 (117)
T ss_pred             HHHHHHcCcccceeCCCchhHHhhccH
Confidence            666666666666666666666665543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.49  E-value=4.7e-13  Score=138.94  Aligned_cols=127  Identities=30%  Similarity=0.365  Sum_probs=118.1

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCc-----HHHHHHHHHcCC---CCCccCCCCC
Q psy3899         575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH-----TRIVAYLVAKGI---NVNLQDRNGM  646 (923)
Q Consensus       575 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~-----~~~v~~Ll~~g~---~~~~~d~~g~  646 (923)
                      .+..+.+++|.++..+..++++++++.|++++.+|..|.||||+|+..++     .++++.|++.|+   +.+..|..|.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~  148 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN  148 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCC
Confidence            34447899999999999999999999999999999999999999999999     999999999999   6666799999


Q ss_pred             cHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCC
Q psy3899         647 TALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT  703 (923)
Q Consensus       647 t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~g  703 (923)
                      ||||+|+..| ..+++++|+..|++++..+. .|.|++|+|+..++.++++.+++.+
T Consensus       149 tpl~~A~~~~-~~~~~~~ll~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         149 TPLHWAALNG-DADIVELLLEAGADPNSRNS-YGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             chhHHHHHcC-chHHHHHHHhcCCCCccccc-CCCcchhhhcccchHHHHHHHHhcC
Confidence            9999999999 67999999999999999988 9999999999999999999999976

>KOG1314|consensus

Probab=99.48  E-value=2.7e-14  Score=143.07  Aligned_cols=75  Identities=27%  Similarity=0.457  Sum_probs=60.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHhcCCCCCcccccccCCCcCCCCCCCccccHhhh
Q psy3899         839 VVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVA  918 (923)
Q Consensus       839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~  918 (923)
                      +.++...+.|.....+.+++|+.++++.||++|....++.....        .-.+||.+|+-+|||||||||.|||||+
T Consensus        45 ~~g~~n~i~f~~~~~m~~~ny~~A~~~gPG~vp~~wkPe~~~D~--------~~lqfCk~CqgYKapRSHHCrkCnrCvm  116 (414)
T KOG1314|consen   45 FLGVPNQITFLLWTSMILYNYFNAIFTGPGFVPLGWKPENPKDE--------MFLQFCKKCQGYKAPRSHHCRKCNRCVM  116 (414)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhH--------HHHHHHhhccCcCCCccccchHHHHHHH
Confidence            44667777888888899999999999999999976543221110        1147999999999999999999999999


Q ss_pred             ccc
Q psy3899         919 KLI  921 (923)
Q Consensus       919 k~~  921 (923)
                      ||-
T Consensus       117 kMD  119 (414)
T KOG1314|consen  117 KMD  119 (414)
T ss_pred             hhc
Confidence            993

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.45  E-value=7.5e-14  Score=107.89  Aligned_cols=55  Identities=47%  Similarity=0.748  Sum_probs=19.9

Q ss_pred             ccccC-cccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHH
Q psy3899           4 FISQG-AIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA   59 (923)
Q Consensus         4 Li~~g-~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~A   59 (923)
                      |+++| +++|..|.. |+||||+||+.|+.++|++|++.|++++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~-G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKY-GNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TT-S--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCC-CCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            34555 555555544 55666666555555555555555555555555555555554

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.44  E-value=2e-13  Score=105.05  Aligned_cols=54  Identities=48%  Similarity=0.811  Sum_probs=44.4

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHH
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV   72 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll   72 (923)
                      |+||||+||+.|+.++|++|+++|++++.+|.+|+||||+|+.+|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999999999999999999999999999999999986

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.44  E-value=3.2e-13  Score=159.98  Aligned_cols=107  Identities=23%  Similarity=0.258  Sum_probs=100.1

Q ss_pred             hHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcH
Q psy3899          54 TCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH  133 (923)
Q Consensus        54 TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~  133 (923)
                      +.|+.||..|+.++++.|+++|+++|.+|.+|.||||+||.+|+ .+++++|+++|++++.+|. .|.||||+|+..|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~-~eiv~~LL~~Gadvn~~d~-~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGH-VQVVRVLLEFGADPTLLDK-DGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCC-HHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHCCcH
Confidence            35889999999999999999999999999999999999999995 9999999999999999999 999999999999999


Q ss_pred             HHHHHHHhc-------CCCCCCCCCCCCChHHHHHh
Q psy3899         134 VAITTLVSH-------TSSLEIPNAQGLTPFMLLEE  162 (923)
Q Consensus       134 ~iv~~Ll~~-------ga~~~~~~~~g~t~L~~A~~  162 (923)
                      +++++|+++       |++.+..+..|.+|+..+..
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~~  197 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDSP  197 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchhhh
Confidence            999999998       88888889999988876653

>KOG1710|consensus

Probab=99.43  E-value=6.4e-13  Score=129.84  Aligned_cols=122  Identities=24%  Similarity=0.329  Sum_probs=110.4

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCccccc-CCCCCcHHHHHHHhcC
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ-DRNGMTALMWSAYKVF   97 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~-d~~g~TpL~~Aa~~g~   97 (923)
                      -..||..|+..|+.+-..-||+.-.++|.+|..|.|||.-|+..|+.++|++|++.|+|+|.. +..+.||||+||..| 
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG-   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG-   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC-
Confidence            468999999999999999999876679999999999999999999999999999999999875 566899999999999 


Q ss_pred             CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhc
Q psy3899          98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH  142 (923)
Q Consensus        98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~  142 (923)
                      +.+|.++|++.|+.+...|. -|.|+-..||.-|+.++|..+-++
T Consensus        91 n~dvcrllldaGa~~~~vNs-vgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   91 NQDVCRLLLDAGARMYLVNS-VGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CchHHHHHHhccCccccccc-hhhhHHHHHHHhcchHHHHHHhcc
Confidence            59999999999999999988 899999999999999999877543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.43  E-value=3.3e-13  Score=159.92  Aligned_cols=106  Identities=26%  Similarity=0.329  Sum_probs=99.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCc
Q psy3899          21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLD  100 (923)
Q Consensus        21 T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~  100 (923)
                      +.|+.|+..|+.+.|+.|++.|+++|.+|.+|+||||+|+..|+.+++++|+++|+++|.+|.+|.||||+|+..|+ .+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~-~~  162 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGF-RE  162 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCc-HH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999995 99


Q ss_pred             hhHHHHhc-------CCCcccccccCCCcHHHHHH
Q psy3899         101 PTRLLITF-------GASTTIQDKIHGNVALHWAI  128 (923)
Q Consensus       101 vv~lLl~~-------ga~~~~~d~~~g~T~L~~A~  128 (923)
                      ++++|+++       |++++..+. .|.+|+..+.
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~~~~-~g~~~~~~~~  196 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKPDSF-TGKPPSLEDS  196 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCcccc-CCCCccchhh
Confidence            99999998       888888887 8888877655

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.43  E-value=1.4e-13  Score=106.44  Aligned_cols=55  Identities=38%  Similarity=0.692  Sum_probs=32.3

Q ss_pred             HHHcC-CCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHH
Q psy3899          38 LIQHG-ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS   92 (923)
Q Consensus        38 Ll~~g-a~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~A   92 (923)
                      ||++| ++++.+|..|+||||+||..|+.++|++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            57777 89999999999999999999999999999999999999999999999987

>KOG0515|consensus

Probab=99.39  E-value=6.8e-13  Score=139.57  Aligned_cols=119  Identities=28%  Similarity=0.267  Sum_probs=98.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCch
Q psy3899          22 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP  101 (923)
Q Consensus        22 ~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~v  101 (923)
                      .|.-|+..|-+|+|+..+..--|+...|.+|-||||-|+-.||.+||++||+.|++||..|.+|+||||+||..+ +..+
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCN-nv~~  631 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCN-NVPM  631 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcC-chHH
Confidence            455688889999999998887788888889999999999999999999999999999999999999999988887 5888


Q ss_pred             hHHHHhcCCCcccccccCCCcHHHHHH--HhCcHHHHHHHHh
Q psy3899         102 TRLLITFGASTTIQDKIHGNVALHWAI--YAKNHVAITTLVS  141 (923)
Q Consensus       102 v~lLl~~ga~~~~~d~~~g~T~L~~A~--~~g~~~iv~~Ll~  141 (923)
                      ++.|++.|+-+-+....++.||..-+-  +-|+..|.++|-.
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            999999988887665557778766543  4578888888864

>KOG1710|consensus

Probab=99.36  E-value=2e-12  Score=126.36  Aligned_cols=122  Identities=21%  Similarity=0.189  Sum_probs=112.4

Q ss_pred             CChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhC
Q psy3899          52 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAK  131 (923)
Q Consensus        52 g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g  131 (923)
                      -..||.-|+-.|..+-...|++.--.+|.+|..|.|||.+|+.+| +.++|++|++.|+|+|-..-..++||||.||.+|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykG-nl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKG-NLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcC-cHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            357999999999999999999886679999999999999999999 6999999999999998754337899999999999


Q ss_pred             cHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899         132 NHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  179 (923)
Q Consensus       132 ~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~  179 (923)
                      +.++.+.|++.|+.+...|.-|+|+-+.|+--|+-+     +|..+-+
T Consensus        91 n~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~-----CV~iINN  133 (396)
T KOG1710|consen   91 NQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHE-----CVAIINN  133 (396)
T ss_pred             CchHHHHHHhccCccccccchhhhHHHHHHHhcchH-----HHHHHhc
Confidence            999999999999999999999999999999999999     8887654

>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]

Probab=99.35  E-value=8e-13  Score=139.24  Aligned_cols=77  Identities=36%  Similarity=0.657  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCCCC--chhHHHHHHHHHhcCCCCCcccccccCCCcCCCCCCCccccHhhhcc
Q psy3899         844 VSLLFFSTSGVLWYNFIKCWKGDPGVITAP--QDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKL  920 (923)
Q Consensus       844 ~~~~~~~~~~~~~~~~~~~~~~dPG~~~~~--~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~k~  920 (923)
                      ..+.+....++..+++++..++|||..+..  .....+.+......+.....+||.+|+.+||+|||||+.|||||+||
T Consensus        58 ~~i~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~KP~RS~HC~~Cn~CV~k~  136 (309)
T COG5273          58 FIILFIVILVLASFSYLLLLVSDPGYLGENITLSGYRETISRLLDDGKFGTENFCSTCNIYKPPRSHHCSICNRCVLKF  136 (309)
T ss_pred             hhhhhhhhhhhHHHhhHHHhhcCCCccCccccccchhhhhhhhhhcCccccceeccccccccCCCCccchhhcchhhcc
Confidence            344555556678889999999999999843  22233345566677788889999999999999999999999999998

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.26  E-value=1.1e-11  Score=95.45  Aligned_cols=54  Identities=48%  Similarity=0.811  Sum_probs=34.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHH
Q psy3899         579 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV  632 (923)
Q Consensus       579 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  632 (923)
                      |.||||+|++.|+.+++++|+++|+|++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            466777777777777777777777777777777777777777777777777664

...

>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.24  E-value=1.6e-12  Score=128.14  Aligned_cols=64  Identities=34%  Similarity=0.703  Sum_probs=48.9

Q ss_pred             HHHHHhhccCCCCCCCC-c---------hhHHHHHHHHHhcCCCCCcccccccCCCcCCCCCCCccccHhhhcc
Q psy3899         857 YNFIKCWKGDPGVITAP-Q---------DEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKL  920 (923)
Q Consensus       857 ~~~~~~~~~dPG~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~k~  920 (923)
                      ++|+++.++|||++|.. .         +.......+..+.+...+.+||.+|..+||+|||||+.||+||.||
T Consensus         2 ~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~   75 (174)
T PF01529_consen    2 WSYFLTIFIDPGYVPRSNPDEDQRQEEKEEEQNQSIDSPEDDENGELKYCSTCKIIKPPRSHHCRVCNRCVLRF   75 (174)
T ss_pred             EEehhhheECCcccCCccccccccccccccccchhhhhhccccCCCCEECcccCCcCCCcceeccccccccccc
Confidence            56889999999999988 1         1111112223344455678999999999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>KOG0515|consensus

Probab=99.20  E-value=2.8e-11  Score=127.66  Aligned_cols=118  Identities=20%  Similarity=0.184  Sum_probs=103.5

Q ss_pred             HHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHH
Q psy3899          56 IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVA  135 (923)
Q Consensus        56 Lh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~i  135 (923)
                      |.-|+..|..++|+-.+..--|+...|.+|-|+||-|+..|| -+||++|+++|+++|..|. +|+||||+||.+++..+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCagh-yeIVkFLi~~ganVNa~DS-dGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGH-YEIVKFLIEFGANVNAADS-DGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcch-hHHHHHHHhcCCcccCccC-CCCchhhhhhhcCchHH
Confidence            445889999999999999888999999999999999999996 9999999999999999999 99999999999999999


Q ss_pred             HHHHHhcCCCCCCCC-CCCCChHHHHH--hhcCCCCCchhhhhHHHHH
Q psy3899         136 ITTLVSHTSSLEIPN-AQGLTPFMLLE--ENIGAPWLGKATVDKITEL  180 (923)
Q Consensus       136 v~~Ll~~ga~~~~~~-~~g~t~L~~A~--~~g~~~~~~~~~v~~L~~~  180 (923)
                      ++.|++.|+-+.... .++.||..-.-  +.|...     |.++|-..
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~-----CsqyL~~v  674 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQ-----CSQYLYGV  674 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcchhhhhHHH-----HHHHHHHH
Confidence            999999998664443 56788887664  346677     88888763

>KOG1312|consensus

Probab=99.20  E-value=1.4e-11  Score=120.45  Aligned_cols=79  Identities=35%  Similarity=0.583  Sum_probs=55.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchhHHHHHHHHHhcCCCCCcccccccCCCcCCCCCCCccccHhhhcc
Q psy3899         841 NFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKL  920 (923)
Q Consensus       841 ~~~~~~~~~~~~~~~~~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~k~  920 (923)
                      +....+......++-..++..++.+|||.+.+..+......-+.. ...+.+...|+||.+.||-||||||+|||||.||
T Consensus        97 sl~~~il~~l~vivp~i~f~ltc~snpg~i~k~n~s~~~~~ypYD-y~if~k~~kCSTCki~KPARSKHCsiCNrCV~rf  175 (341)
T KOG1312|consen   97 SLHYLILPYLLVIVPLIFFTLTCGSNPGIITKANESLFLHVYPYD-YVIFPKNVKCSTCKIRKPARSKHCSICNRCVHRF  175 (341)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhhhccceeccCcc-ceeecCCCccccccCCCccccccchHHHHHHHHh
Confidence            444444444555556667778999999999887654332211111 1123345789999999999999999999999997

>KOG1311|consensus

Probab=99.18  E-value=1.6e-11  Score=131.75  Aligned_cols=66  Identities=30%  Similarity=0.665  Sum_probs=44.8

Q ss_pred             HHHHHHHhhc---cCCCCCCCCchhHHHH------HHHHHhcCCCCCcccccccCCCcCCCCCCCccccHhhhcc
Q psy3899         855 LWYNFIKCWK---GDPGVITAPQDEKFRY------IIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKL  920 (923)
Q Consensus       855 ~~~~~~~~~~---~dPG~~~~~~~~~~~~------~~~~~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~k~  920 (923)
                      .+..++.+.+   +|||.+|+..+...+.      .......+...+++||.+|+.+|||||||||+||+||+||
T Consensus        66 ~~~~~~~~~~~~~sdpg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~rPpRs~HCsvC~~CV~rf  140 (299)
T KOG1311|consen   66 NILNLMLACFRMLSDPGIVPRADDEQIEDPERAPLYKNVDVNGIQVEWKYCDTCQLYRPPRSSHCSVCNNCVLRF  140 (299)
T ss_pred             HHHHHHHHHhcccCCCceecCcccCCCCCccccccCCCcccCCcccceEEcCcCcccCCCCcccchhhccccccc
Confidence            3333444444   4999999853111111      1112233444568999999999999999999999999998

>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.11  E-value=5.4e-10  Score=110.18  Aligned_cols=159  Identities=34%  Similarity=0.640  Sum_probs=114.4

Q ss_pred             hhhhccCCCccccCC----------hhhHHHHHHHHHhcCCCCCCccccccccccCCcCcCccchhhHhhccCCCCcccc
Q psy3899         299 FIKCWKGDPGVITAP----------QDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVG  368 (923)
Q Consensus       299 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  368 (923)
                      ++.....|||+++..          .+..........+.+.....++|..|...+|.|++||..|++|+.++||||+|.+
T Consensus         4 ~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~w~~   83 (174)
T PF01529_consen    4 YFLTIFIDPGYVPRSNPDEDQRQEEKEEEQNQSIDSPEDDENGELKYCSTCKIIKPPRSHHCRVCNRCVLRFDHHCPWLG   83 (174)
T ss_pred             ehhhheECCcccCCccccccccccccccccchhhhhhccccCCCCEECcccCCcCCCcceeccccccccccccccchhhc
Confidence            445667889988876          1222223333444556677889999999999999999999999999999999999


Q ss_pred             ccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHH
Q psy3899         369 NCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLS  448 (923)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  448 (923)
                      ++||.+|+++|..++....+...........++...............        ........+........++..++.
T Consensus        84 ~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~  155 (174)
T PF01529_consen   84 NCIGRRNHRYFLLFLLYLCLYCLYFFILSLYYLVRYIPSISFSSFWIF--------SNFSSIFLLIISIFFFIFVGFLLI  155 (174)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc--------hhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988888888888777777665332222111100        000023445555666677778888


Q ss_pred             HHHHHHHHhcchHHHHhh
Q psy3899         449 CQLYQIISLGMTTNERMN  466 (923)
Q Consensus       449 ~q~~~i~~~~~~~~~~~~  466 (923)
                      .|+..+. .|.+..|..+
T Consensus       156 ~~~~~i~-~n~Tt~E~~~  172 (174)
T PF01529_consen  156 FQLYLIL-RNITTYERIK  172 (174)
T ss_pred             HHHHHHH-cCCcHHHHHH
Confidence            8887777 6888887665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]

Probab=98.98  E-value=7.2e-09  Score=109.50  Aligned_cols=125  Identities=35%  Similarity=0.724  Sum_probs=102.1

Q ss_pred             hhHHHHHhhhhhhhHHHHhhhhhccCCCcccc--CChhhHHHHHHHHHhcCCCCCCccccccccccCCcCcCccchhhHh
Q psy3899         280 VNFFVSLLFFSTSGVLWYNFIKCWKGDPGVIT--APQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCV  357 (923)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~  357 (923)
                      ......+.+.+-.......+......||+...  ......++.+......+......+|.+|...+|-|++||+.|++|+
T Consensus        54 ~~~~~~i~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~KP~RS~HC~~Cn~CV  133 (309)
T COG5273          54 LVVLFIILFIVILVLASFSYLLLLVSDPGYLGENITLSGYRETISRLLDDGKFGTENFCSTCNIYKPPRSHHCSICNRCV  133 (309)
T ss_pred             chhhhhhhhhhhhhhHHHhhHHHhhcCCCccCccccccchhhhhhhhhhcCccccceeccccccccCCCCccchhhcchh
Confidence            33445555566666677777888888998875  3344566777788888999999999999999999999999999999


Q ss_pred             hccCCCCccccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3899         358 AKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSK  404 (923)
Q Consensus       358 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~  404 (923)
                      .++||||+|.+||||.+|++.|..+++............+..|+..-
T Consensus       134 ~k~DHHC~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~~~~~~~~~  180 (309)
T COG5273         134 LKFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGI  180 (309)
T ss_pred             hccCccCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999888777777776666665444

>KOG0783|consensus

Probab=98.90  E-value=7.6e-10  Score=122.84  Aligned_cols=94  Identities=32%  Similarity=0.390  Sum_probs=85.1

Q ss_pred             HHHHHHc-CC-CCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCC
Q psy3899         628 VAYLVAK-GI-NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS  705 (923)
Q Consensus       628 v~~Ll~~-g~-~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad  705 (923)
                      ++-+++. +. -.|..|..|+|+||+++..+ ..+++++|+++|+|++.+|...|+||||-|+.+|+.+++..||++|+.
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~-k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S  111 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSEN-KNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS  111 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccc-hhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence            4444443 22 37889999999999999887 789999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCHHHHHHh
Q psy3899         706 LEIPNAQGLTPFMLLEE  722 (923)
Q Consensus       706 ~~~~d~~g~tpl~~a~~  722 (923)
                      +.++|++|..||++..+
T Consensus       112 L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  112 LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             eEEecccCCCHHHHHhh
Confidence            99999999999999887

>KOG1313|consensus

Probab=98.85  E-value=2.8e-09  Score=104.16  Aligned_cols=51  Identities=35%  Similarity=0.639  Sum_probs=39.1

Q ss_pred             HHHHHHHHhhccCCCCCCCCchhHHHHHHHHHhcCCCCCcccccccCCCcCCCCCCCccccHhhhccc
Q psy3899         854 VLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKLI  921 (923)
Q Consensus       854 ~~~~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~k~~  921 (923)
                      ...+.|+++.+..|-..|..                 +...+|.+|.-+||||+||||+|+|||+||-
T Consensus        80 nvi~hy~ka~t~pPvgn~~~-----------------~~~SfC~KC~~pK~prTHHCsiC~kCVL~MD  130 (309)
T KOG1313|consen   80 NVIFHYYKARTKPPVGNPGL-----------------ENDSFCNKCNYPKSPRTHHCSICNKCVLKMD  130 (309)
T ss_pred             HHHHhheeecccCCcCCCCC-----------------ccccHHhhcCCCCCCCcchhhHHhhHhhccc
Confidence            44556788888776322222                 2246899999999999999999999999993

>KOG0783|consensus

Probab=98.81  E-value=2.3e-09  Score=119.08  Aligned_cols=85  Identities=25%  Similarity=0.433  Sum_probs=77.8

Q ss_pred             cccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHH
Q psy3899          11 VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDS-EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL   89 (923)
Q Consensus        11 ~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~-~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL   89 (923)
                      .|.+| ..|+|+||+|++.|..+++++||++|++++.+|. .|+||||-|+..||.+++.+|+.+|+.+..+|++|.+||
T Consensus        45 anikD-~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglspl  123 (1267)
T KOG0783|consen   45 ANIKD-RYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPL  123 (1267)
T ss_pred             hhHHH-hhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHH
Confidence            45555 4599999999999999999999999999999986 699999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy3899          90 MWSAYKV   96 (923)
Q Consensus        90 ~~Aa~~g   96 (923)
                      .+-+...
T Consensus       124 q~~~r~~  130 (1267)
T KOG0783|consen  124 QFLSRVL  130 (1267)
T ss_pred             HHHhhcc
Confidence            9777633

>KOG1312|consensus

Probab=98.80  E-value=7.3e-09  Score=101.72  Aligned_cols=98  Identities=41%  Similarity=0.838  Sum_probs=70.3

Q ss_pred             HHhhhhhccCCCccccCChhhHHHHHHHHHhcC-CCCCCccccccccccCCcCcCccchhhHhhccCCCCccccccccCc
Q psy3899         296 WYNFIKCWKGDPGVITAPQDEKFRYIIELAERG-TFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAK  374 (923)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  374 (923)
                      ...+..+-..+||.++...+.  ..+.+..-.. -+.+...|.+|.+++|-|+|||++||+|+.+|||||.|.+||+|..
T Consensus       112 ~i~f~ltc~snpg~i~k~n~s--~~~~~ypYDy~if~k~~kCSTCki~KPARSKHCsiCNrCV~rfDHHCiWiNNCIG~~  189 (341)
T KOG1312|consen  112 LIFFTLTCGSNPGIITKANES--LFLHVYPYDYVIFPKNVKCSTCKIRKPARSKHCSICNRCVHRFDHHCIWINNCIGAW  189 (341)
T ss_pred             HHHHhhhhcCCCCccchhhhc--cceeccCccceeecCCCccccccCCCccccccchHHHHHHHHhccceEeeecccccc
Confidence            344555667788876432221  1111111111 2333467999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHH
Q psy3899         375 NHKYFVGYISSLLFMCCFVLY  395 (923)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~  395 (923)
                      |.++|..+++.....+.....
T Consensus       190 N~ryF~lFLL~~i~l~~yaiv  210 (341)
T KOG1312|consen  190 NIRYFLLFLLTLISLATYAIV  210 (341)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            999999998887555544433

>KOG0782|consensus

Probab=98.72  E-value=3.5e-08  Score=105.13  Aligned_cols=121  Identities=23%  Similarity=0.259  Sum_probs=100.8

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCc--ccccCCCCCcHHHHHHHhc
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN--VNLQDRNGMTALMWSAYKV   96 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~--vn~~d~~g~TpL~~Aa~~g   96 (923)
                      +++ +..|+..+++--.+..-..|.++-.++.+..|-||+|+..|+-++|+|++++|..  ++..|..|+|+||-||..+
T Consensus       867 see-il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~  945 (1004)
T KOG0782|consen  867 SEE-ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQR  945 (1004)
T ss_pred             cHH-HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhc
Confidence            344 4455555554444444445778888999999999999999999999999999866  7888899999999998888


Q ss_pred             CCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhc
Q psy3899          97 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH  142 (923)
Q Consensus        97 ~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~  142 (923)
                       +-.+.++|++.|+..-..|. .|.||-..|-+.|+.+...||-+.
T Consensus       946 -~r~vc~~lvdagasl~ktd~-kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  946 -NRAVCQLLVDAGASLRKTDS-KGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             -chHHHHHHHhcchhheeccc-CCCChHHHHHhcCCchHHHHHhhh
Confidence             58999999999999999998 999999999999999999998765

>PF13606 Ank_3: Ankyrin repeat

Probab=98.71  E-value=1.5e-08  Score=66.32  Aligned_cols=28  Identities=46%  Similarity=0.714  Sum_probs=14.1

Q ss_pred             CChHHHHHHHhCcHHHHHHHHHCCCccc
Q psy3899          52 GSTCIHQAAQFGHTRIVAYLVAKGINVN   79 (923)
Q Consensus        52 g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn   79 (923)
                      |+||||+||+.|+.++|++|+++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            4455555555555555555555554444

>KOG0818|consensus

Probab=98.66  E-value=6.1e-08  Score=102.19  Aligned_cols=93  Identities=24%  Similarity=0.315  Sum_probs=66.4

Q ss_pred             ccCCCCChH------HHHHHHhCcHHHHHHHHHCCCcccccC-CCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccC
Q psy3899          47 LMDSEGSTC------IHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH  119 (923)
Q Consensus        47 ~~d~~g~Tp------Lh~Aa~~g~~~iv~~Ll~~ga~vn~~d-~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~  119 (923)
                      -+|.+|-|+      ||-.++.|+.+++--||.-||++|..+ ..|.||||.||..| ...-+++|.-+|||++.+|. .
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~G-q~~Q~ElL~vYGAD~~a~d~-~  199 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAG-QILQAELLAVYGADPGAQDS-S  199 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhcc-chhhhhHHhhccCCCCCCCC-C
Confidence            345555554      777777777777777777777777765 34777777777777 46677777777777777777 7


Q ss_pred             CCcHHHHHHHhCcHHHHHHHHh
Q psy3899         120 GNVALHWAIYAKNHVAITTLVS  141 (923)
Q Consensus       120 g~T~L~~A~~~g~~~iv~~Ll~  141 (923)
                      |.||+.+|-..||.++.+.|++
T Consensus       200 GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  200 GMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCcHHHHHHhcCchHHHHHHHH
Confidence            7777777777777777777765

>PF13606 Ank_3: Ankyrin repeat

Probab=98.65  E-value=3.2e-08  Score=64.80  Aligned_cols=30  Identities=27%  Similarity=0.380  Sum_probs=27.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy3899         679 HGNVALHWAIYAKNHVAITTLVSHTSSLEI  708 (923)
Q Consensus       679 ~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~  708 (923)
                      +|+||||+|+..|+.++|++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            489999999999999999999999999874

>KOG0506|consensus

Probab=98.64  E-value=2e-08  Score=105.31  Aligned_cols=90  Identities=18%  Similarity=0.210  Sum_probs=47.7

Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhc-CCCcccccccCCCcHHHHHHH
Q psy3899          51 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF-GASTTIQDKIHGNVALHWAIY  129 (923)
Q Consensus        51 ~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~-ga~~~~~d~~~g~T~L~~A~~  129 (923)
                      ++..++++||+.|+...++-+.-.|.|++.+|.+.+|+||.||..|| .+++|+|++. +.+++.+|. .|+|||.-|..
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~-v~v~kfl~~~~kv~~~~kDR-w~rtPlDdA~~  582 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGH-VEVVKFLLNACKVDPDPKDR-WGRTPLDDAKH  582 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCc-eeHHHHHHHHHcCCCChhhc-cCCCcchHhHh
Confidence            34445555555555555555555555555555555555555555553 5555555543 455555555 55555555555


Q ss_pred             hCcHHHHHHHHhc
Q psy3899         130 AKNHVAITTLVSH  142 (923)
Q Consensus       130 ~g~~~iv~~Ll~~  142 (923)
                      -+|.+++++|-+.
T Consensus       583 F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  583 FKHKEVVKLLEEA  595 (622)
T ss_pred             cCcHHHHHHHHHH
Confidence            5555555555543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.63  E-value=3.7e-08  Score=66.67  Aligned_cols=31  Identities=52%  Similarity=0.812  Sum_probs=15.5

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccC
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADPTLMD   49 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d   49 (923)
                      |+||||+||..|+.++|++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            4455555555555555555555555554443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.63  E-value=4.5e-08  Score=66.28  Aligned_cols=33  Identities=21%  Similarity=0.385  Sum_probs=30.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q psy3899         679 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA  711 (923)
Q Consensus       679 ~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~  711 (923)
                      +|+||||+|+.+|+.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            489999999999999999999999999999874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818|consensus

Probab=98.63  E-value=1.1e-07  Score=100.43  Aligned_cols=96  Identities=32%  Similarity=0.389  Sum_probs=86.7

Q ss_pred             CCCCCCCCCc------HhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy3899         538 VNEPDSETVT------LLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE  611 (923)
Q Consensus       538 ~~~~~~~g~t------~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~  611 (923)
                      ...+|.+|.|      -||..++.|+.++.-.||..|+++|....+.|.||||.|++.|+..=+++|+-+|||+...|..
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~  199 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSS  199 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCC
Confidence            3455666654      4899999999999999999999999998888999999999999999999999999999999999


Q ss_pred             CChHHHHHHHcCcHHHHHHHHH
Q psy3899         612 GSTCIHQAAQFGHTRIVAYLVA  633 (923)
Q Consensus       612 g~t~Lh~A~~~~~~~~v~~Ll~  633 (923)
                      |+||+.+|-+.|+.++.+-|++
T Consensus       200 GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  200 GMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCcHHHHHHhcCchHHHHHHHH
Confidence            9999999999999887776665

>KOG0506|consensus

Probab=98.57  E-value=6.1e-08  Score=101.77  Aligned_cols=91  Identities=23%  Similarity=0.293  Sum_probs=66.1

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHC-CCcccccCCCCCcHHHHHHHhcC
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAYKVF   97 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~-ga~vn~~d~~g~TpL~~Aa~~g~   97 (923)
                      +.-++++||..|++..++.+.-.|.|++.+|-+.+|+||+||..||++++|+|++. +.+++.+|+.|+|||--|-.-+|
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h  585 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKH  585 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCc
Confidence            44667777777777777777777777777777777777777777777777777765 67777777777777777777775


Q ss_pred             CCchhHHHHhcCC
Q psy3899          98 SLDPTRLLITFGA  110 (923)
Q Consensus        98 ~~~vv~lLl~~ga  110 (923)
                       .+++++|.+.-.
T Consensus       586 -~~v~k~L~~~~~  597 (622)
T KOG0506|consen  586 -KEVVKLLEEAQY  597 (622)
T ss_pred             -HHHHHHHHHHhc
Confidence             777777766543

>KOG0705|consensus

Probab=98.52  E-value=1.7e-07  Score=100.81  Aligned_cols=91  Identities=26%  Similarity=0.428  Sum_probs=68.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCC--CCc--cCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhc
Q psy3899          21 TPLHWATRQGHLDSVVLLIQHGAD--PTL--MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV   96 (923)
Q Consensus        21 T~Lh~Aa~~g~~~~V~~Ll~~ga~--~~~--~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g   96 (923)
                      .-|..|+...++..+-+||.+|-.  +|.  .+.+|+||||+||+.|++.+.++|+=+|+|+..+|..|+|+|.||-+.|
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence            446667777777778888887633  222  3556778888888888888888888888888888888888888888887


Q ss_pred             CCCchhHHHHhcCCCc
Q psy3899          97 FSLDPTRLLITFGAST  112 (923)
Q Consensus        97 ~~~~vv~lLl~~ga~~  112 (923)
                       +.+++.+|+++|...
T Consensus       706 -sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  706 -SQECIDVLLQYGCPD  720 (749)
T ss_pred             -cHHHHHHHHHcCCCc
Confidence             588888888887644

>KOG1311|consensus

Probab=98.50  E-value=1.3e-07  Score=101.50  Aligned_cols=77  Identities=40%  Similarity=0.867  Sum_probs=66.4

Q ss_pred             cCCCCCCccccccccccCCcCcCccchhhHhhccCCCCccccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3899         327 RGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKS  403 (923)
Q Consensus       327 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~  403 (923)
                      .|......+|..|...+|.|++||+.|++|+.++||||+|++||||.+|+.+|..++.+...+.........-++..
T Consensus       107 ~~~~~~~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~~~~l~~i~~~~~~~~~~~~  183 (299)
T KOG1311|consen  107 NGIQVEWKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLFYLALGVLLALAFLFYELLQ  183 (299)
T ss_pred             CCcccceEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444578999999999999999999999999999999999999999999999988887777777777766666544

>KOG1313|consensus

Probab=98.45  E-value=3.1e-07  Score=90.14  Aligned_cols=78  Identities=41%  Similarity=0.913  Sum_probs=70.2

Q ss_pred             cCCCCCCccccccccccCCcCcCccchhhHhhccCCCCccccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3899         327 RGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSK  404 (923)
Q Consensus       327 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~  404 (923)
                      ++..+..++|..|-..++-+..||+.|++|+-+-||||+|++||+|..||++|..++.+..+++.....+....+.+.
T Consensus        96 n~~~~~~SfC~KC~~pK~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NHryFFlFl~~ltlat~~~~i~~~~~w~~~  173 (309)
T KOG1313|consen   96 NPGLENDSFCNKCNYPKSPRTHHCSICNKCVLKMDHHCPWINNCVGAHNHRYFFLFLFYLTLATSYAAIMCVYTWIDH  173 (309)
T ss_pred             CCCCccccHHhhcCCCCCCCcchhhHHhhHhhccccCCchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345666789999999999999999999999999999999999999999999999999999999999888866555443

>KOG0522|consensus

Probab=98.39  E-value=4.5e-07  Score=97.45  Aligned_cols=84  Identities=23%  Similarity=0.313  Sum_probs=64.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCC
Q psy3899          22 PLHWATRQGHLDSVVLLIQH--GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSL   99 (923)
Q Consensus        22 ~Lh~Aa~~g~~~~V~~Ll~~--ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~   99 (923)
                      |||+++...+.+-....+..  +..++.+|..|+||||+|++.||...++.|+.+|+++..+|++|++|||-|+..|. .
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~-~  101 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGN-E  101 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCC-H
Confidence            48888888777665543322  56777788888888888888888888888888888888888888888888888884 4


Q ss_pred             chhHHHH
Q psy3899         100 DPTRLLI  106 (923)
Q Consensus       100 ~vv~lLl  106 (923)
                      .++.-++
T Consensus       102 q~i~~vl  108 (560)
T KOG0522|consen  102 QIITEVL  108 (560)
T ss_pred             HHHHHHH
Confidence            4444443

>KOG1314|consensus

Probab=98.38  E-value=1.5e-06  Score=88.33  Aligned_cols=101  Identities=34%  Similarity=0.755  Sum_probs=79.3

Q ss_pred             hhHHHHHhhhhhhhHHHHhhhhhccCCCccccCCh--hhHHHHHHHHHhcCCCCCCccccccccccCCcCcCccchhhHh
Q psy3899         280 VNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQ--DEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCV  357 (923)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~  357 (923)
                      .+...++.+++.....++++++..-..||+++..=  ++....+          ...||-.|--.++-|+.||+-|++|+
T Consensus        46 ~g~~n~i~f~~~~~m~~~ny~~A~~~gPG~vp~~wkPe~~~D~~----------~lqfCk~CqgYKapRSHHCrkCnrCv  115 (414)
T KOG1314|consen   46 LGVPNQITFLLWTSMILYNYFNAIFTGPGFVPLGWKPENPKDEM----------FLQFCKKCQGYKAPRSHHCRKCNRCV  115 (414)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHH----------HHHHHhhccCcCCCccccchHHHHHH
Confidence            45556777777788888899999989998887421  1111111          13568888899999999999999999


Q ss_pred             hccCCCCccccccccCcchhHHHHHHHHHHHHH
Q psy3899         358 AKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMC  390 (923)
Q Consensus       358 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (923)
                      .+-||||||+++|+|-.||.+|+-+++-..++|
T Consensus       116 mkMDHHCPWinnCVG~aNh~~F~~FLlf~ivG~  148 (414)
T KOG1314|consen  116 MKMDHHCPWINNCVGWANHAYFLRFLLFSIVGC  148 (414)
T ss_pred             HhhccCCcchhhcccccccHHHHHHHHHHHHhc
Confidence            999999999999999999999998877666533

>KOG0782|consensus

Probab=98.33  E-value=1.4e-06  Score=93.36  Aligned_cols=91  Identities=22%  Similarity=0.285  Sum_probs=53.3

Q ss_pred             cCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCC--CcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q psy3899         634 KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS--TTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA  711 (923)
Q Consensus       634 ~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~--~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~  711 (923)
                      .|.++-.++.+..|.||+|+..| +-+++++++.+|..  ++..|. .|.|+||-|+..++..++.+|++.|+.+-.+|.
T Consensus       888 ~gg~ll~~~~~~~sllh~a~~tg-~~eivkyildh~p~elld~~de-~get~lhkaa~~~~r~vc~~lvdagasl~ktd~  965 (1004)
T KOG0782|consen  888 NGGSLLIQGPDHCSLLHYAAKTG-NGEIVKYILDHGPSELLDMADE-TGETALHKAACQRNRAVCQLLVDAGASLRKTDS  965 (1004)
T ss_pred             cCCceEeeCcchhhHHHHHHhcC-ChHHHHHHHhcCCHHHHHHHhh-hhhHHHHHHHHhcchHHHHHHHhcchhheeccc
Confidence            34444455555555555555544 44555555555432  234444 666666666666666666777777776666667


Q ss_pred             CCCCHHHHHHhccCC
Q psy3899         712 QGLTPFMLLEENIGA  726 (923)
Q Consensus       712 ~g~tpl~~a~~~~~~  726 (923)
                      +|+||-+-|...++.
T Consensus       966 kg~tp~eraqqa~d~  980 (1004)
T KOG0782|consen  966 KGKTPQERAQQAGDP  980 (1004)
T ss_pred             CCCChHHHHHhcCCc
Confidence            777776666655443

>KOG0705|consensus

Probab=98.24  E-value=2.9e-06  Score=91.63  Aligned_cols=89  Identities=26%  Similarity=0.333  Sum_probs=53.8

Q ss_pred             hHHHHHcCcHHHHHHHHhCCCccc---ccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcH
Q psy3899         549 LHWAAINNRIEIMKYFISQGAIVD---AIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHT  625 (923)
Q Consensus       549 Lh~A~~~g~~~~v~~Ll~~g~~~~---~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~  625 (923)
                      |.-|....++..+-+||.+|....   ...+..|.|+||+||+.|++.+.++|+-+|+|+-.+|..|+|+|.||-+.|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            344555556666666666554321   22233356666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHcCCC
Q psy3899         626 RIVAYLVAKGIN  637 (923)
Q Consensus       626 ~~v~~Ll~~g~~  637 (923)
                      +++..|+.+|+.
T Consensus       708 ec~d~llq~gcp  719 (749)
T KOG0705|consen  708 ECIDVLLQYGCP  719 (749)
T ss_pred             HHHHHHHHcCCC
Confidence            666666666554

>KOG0511|consensus

Probab=98.22  E-value=3e-06  Score=86.86  Aligned_cols=85  Identities=24%  Similarity=0.341  Sum_probs=71.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCc
Q psy3899          21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLD  100 (923)
Q Consensus        21 T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~  100 (923)
                      --|..||+.|+.|.|+.|++.|+++|++|.-..+||.+|+..||..+|++|+++||-...-..+|.-. |++|.+   ..
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLn---d~  113 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALN---DR  113 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhh---HH
Confidence            35889999999999999999999999999999999999999999999999999998887777777766 445553   34


Q ss_pred             hhHHHHhcC
Q psy3899         101 PTRLLITFG  109 (923)
Q Consensus       101 vv~lLl~~g  109 (923)
                      |-++|+.+.
T Consensus       114 IR~mllsyd  122 (516)
T KOG0511|consen  114 IRRMLLSYD  122 (516)
T ss_pred             HHHHHHHHH
Confidence            666776653

>KOG3609|consensus

Probab=98.22  E-value=3e-06  Score=96.76  Aligned_cols=127  Identities=14%  Similarity=0.104  Sum_probs=103.7

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcC----CCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHH
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHG----ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY   94 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~g----a~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~   94 (923)
                      ++-.-..|+..|+.-.|+..++..    .++|.+|.-|+++|++|+.+-|.+++++|++++.++  .     -+|-+|+.
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--g-----dALL~aI~   97 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--G-----DALLLAIA   97 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--c-----hHHHHHHH
Confidence            445667899999999999999872    467789999999999999999999999999997666  3     37778999


Q ss_pred             hcCCCchhHHHHhcCCCc----------ccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCC
Q psy3899          95 KVFSLDPTRLLITFGAST----------TIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGL  154 (923)
Q Consensus        95 ~g~~~~vv~lLl~~ga~~----------~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~  154 (923)
                      .|. ...|++++.+....          ...-. .+-|||.+||..++.||++.|+++|+.+..+....+
T Consensus        98 ~~~-v~~VE~ll~~~~~~~~~~~~~d~~~~~ft-~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~~~C  165 (822)
T KOG3609|consen   98 VGS-VPLVELLLVHFVDAPYLERSGDANSPHFT-PDITPLMLAAHLNNFEILQCLLTRGHCIPIPHDIRC  165 (822)
T ss_pred             HHH-HHHHHHHHhcccccchhccccccCcccCC-CCccHHHHHHHhcchHHHHHHHHcCCCCCCCccccc
Confidence            994 99999999764332          11222 578999999999999999999999998766554433

>KOG0521|consensus

Probab=98.18  E-value=2.2e-06  Score=101.18  Aligned_cols=89  Identities=27%  Similarity=0.311  Sum_probs=72.8

Q ss_pred             CCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHH
Q psy3899          50 SEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIY  129 (923)
Q Consensus        50 ~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~  129 (923)
                      ..|.|+||.|+..|...+++.|+++|+++|..|..|+||||.+...|+ ...+.+|+++|++++..+. +|.+||++|..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~-~~~~~~ll~~~a~~~a~~~-~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGH-TSIACLLLKRGADPNAFDP-DGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcc-cchhhhhccccccccccCc-cCcchhhHHhh
Confidence            367888888888888888888888888888888888888888888885 8888888888888888888 88888888877


Q ss_pred             hCcHHHHHHHH
Q psy3899         130 AKNHVAITTLV  140 (923)
Q Consensus       130 ~g~~~iv~~Ll  140 (923)
                      ..+.+++-+|.
T Consensus       732 ~~~~d~~~l~~  742 (785)
T KOG0521|consen  732 AANADIVLLLR  742 (785)
T ss_pred             hccccHHHHHh
Confidence            76666655554

>KOG0522|consensus

Probab=98.18  E-value=2.9e-06  Score=91.44  Aligned_cols=85  Identities=22%  Similarity=0.313  Sum_probs=44.5

Q ss_pred             HHHHHHcCcHHHHHHHHH--cCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCH
Q psy3899         616 IHQAAQFGHTRIVAYLVA--KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH  693 (923)
Q Consensus       616 Lh~A~~~~~~~~v~~Ll~--~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~  693 (923)
                      +|.++.....+-....+.  .+..++..|..|+||||.|+..| +.+.++.|+..|+++..+++ .|++|||-|+..|+.
T Consensus        24 lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg-~~~~a~~Ll~a~Adv~~kN~-~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   24 LHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLG-HVEAARILLSAGADVSIKNN-EGWSPLHEAVSTGNE  101 (560)
T ss_pred             cchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhc-CHHHHHHHHhcCCCcccccc-ccccHHHHHHHcCCH
Confidence            555555444443332222  13345555555555555555555 55555555555555555555 555555555555555


Q ss_pred             HHHHHHHHC
Q psy3899         694 VAITTLVSH  702 (923)
Q Consensus       694 ~~v~~Ll~~  702 (923)
                      +++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            555544443

>KOG2384|consensus

Probab=98.14  E-value=4.4e-06  Score=77.88  Aligned_cols=76  Identities=18%  Similarity=0.128  Sum_probs=61.2

Q ss_pred             CcccccccCCCCccHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCC
Q psy3899           8 GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG-ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN   84 (923)
Q Consensus         8 g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~g-a~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~   84 (923)
                      +.|||++|-. |.||||+|+..|+.+.|.+|+.+| +.|...|+.|.+++.+|=++|+.++|+.|-+...+....++.
T Consensus         2 e~~in~rD~f-gWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~ns   78 (223)
T KOG2384|consen    2 EGNINARDAF-GWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMNS   78 (223)
T ss_pred             CCCccchhhh-cchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcccC
Confidence            4578888654 888888888888888888888888 888888888888888888888888888888875555554443

>KOG3609|consensus

Probab=98.10  E-value=2.6e-05  Score=89.29  Aligned_cols=135  Identities=16%  Similarity=0.192  Sum_probs=91.0

Q ss_pred             CCCCcHhHHHHHcCcHHHHHHHHhCCCc--cc-ccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q psy3899         543 SETVTLLHWAAINNRIEIMKYFISQGAI--VD-AIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA  619 (923)
Q Consensus       543 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~--~~-~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A  619 (923)
                      ..+.--...|+.+|+...|+..++....  .| +..+..|+++|+.|+.+.+.+++++|++++.+.       ..+|-+|
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~a   95 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLA   95 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHH
Confidence            3445556778888888888888765433  22 123456888888888888888888888876544       3477788


Q ss_pred             HHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHH
Q psy3899         620 AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL  699 (923)
Q Consensus       620 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~L  699 (923)
                      +..|..++|+.++.+........   .                     .+......- ..+-|||.+||..+|.||+++|
T Consensus        96 I~~~~v~~VE~ll~~~~~~~~~~---~---------------------~~d~~~~~f-t~ditPliLAAh~NnyEil~~L  150 (822)
T KOG3609|consen   96 IAVGSVPLVELLLVHFVDAPYLE---R---------------------SGDANSPHF-TPDITPLMLAAHLNNFEILQCL  150 (822)
T ss_pred             HHHHHHHHHHHHHhcccccchhc---c---------------------ccccCcccC-CCCccHHHHHHHhcchHHHHHH
Confidence            88888888888887532221111   0                     111111112 2577999999999999999999


Q ss_pred             HHCCCCCCCC
Q psy3899         700 VSHTSSLEIP  709 (923)
Q Consensus       700 l~~gad~~~~  709 (923)
                      |++|+++..+
T Consensus       151 l~kg~~i~~P  160 (822)
T KOG3609|consen  151 LTRGHCIPIP  160 (822)
T ss_pred             HHcCCCCCCC
Confidence            9999987654

>KOG0521|consensus

Probab=98.09  E-value=2.5e-06  Score=100.73  Aligned_cols=98  Identities=32%  Similarity=0.372  Sum_probs=85.7

Q ss_pred             cCcccccc-cCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCC
Q psy3899           7 QGAIVDAI-GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG   85 (923)
Q Consensus         7 ~g~~~n~~-~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g   85 (923)
                      .|+++|.. .-..|.|+||.|+..|..-.+++|++.|+++|.+|..|+||||.+...|+...+..|+++|++.+..|.+|
T Consensus       643 ~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~  722 (785)
T KOG0521|consen  643 HGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDG  722 (785)
T ss_pred             chhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccC
Confidence            45555542 22347899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHhcCCCchhHHH
Q psy3899          86 MTALMWSAYKVFSLDPTRLL  105 (923)
Q Consensus        86 ~TpL~~Aa~~g~~~~vv~lL  105 (923)
                      .+||.+|.... ..+++-++
T Consensus       723 ~~~l~~a~~~~-~~d~~~l~  741 (785)
T KOG0521|consen  723 KLPLDIAMEAA-NADIVLLL  741 (785)
T ss_pred             cchhhHHhhhc-cccHHHHH
Confidence            99999998774 35555554

>KOG0520|consensus

Probab=98.09  E-value=7.2e-06  Score=95.79  Aligned_cols=130  Identities=16%  Similarity=0.169  Sum_probs=110.0

Q ss_pred             CCCCccCCCCChHHHHHHHhCcHHHHHHHHHC-CCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCC
Q psy3899          43 ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN  121 (923)
Q Consensus        43 a~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~-ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~  121 (923)
                      .........|.|-+|+|+..|+.-.++.+++- |......|.+|.-.+|++|..|+ .-.+.+..-.|..++.+|. .|+
T Consensus       565 ~~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~-ewA~ll~~~~~~ai~i~D~-~G~  642 (975)
T KOG0520|consen  565 NLSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGY-EWAFLPISADGVAIDIRDR-NGW  642 (975)
T ss_pred             hccccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCC-ceeEEEEeecccccccccC-CCC
Confidence            34555677899999999999999999999986 88888899999999999776663 4444445567899999999 999


Q ss_pred             cHHHHHHHhCcHHHHHHHHhcCC------CCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899         122 VALHWAIYAKNHVAITTLVSHTS------SLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  179 (923)
Q Consensus       122 T~L~~A~~~g~~~iv~~Ll~~ga------~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~  179 (923)
                      ||||+|+.+|+..++.-|.+.|+      |++..+-.|.|+-.+|..+|+..     +..+|.+
T Consensus       643 tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~g-----ia~~lse  701 (975)
T KOG0520|consen  643 TPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKG-----IAGYLSE  701 (975)
T ss_pred             cccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccc-----hHHHHhh
Confidence            99999999999999999998776      34445567999999999999999     8888887

>KOG2384|consensus

Probab=98.08  E-value=4.9e-06  Score=77.59  Aligned_cols=73  Identities=21%  Similarity=0.161  Sum_probs=47.3

Q ss_pred             CCCCccCCCCChHHHHHHHhCcHHHHHHHHHCC-CcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCccccc
Q psy3899          43 ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD  116 (923)
Q Consensus        43 a~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g-a~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d  116 (923)
                      .++|++|.-|+|||+.||..|..+.|.||+.+| +.|...|..|.+++.+|-..|+ .++++.|-++-.+-..++
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~-~~fvh~lfe~~~ets~p~   76 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGA-QAFVHSLFENDRETSHPM   76 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcCh-HHHHHHHHHHhccCCCcc
Confidence            466666667777777777777777777777766 6666666666666666666664 666666666644444433

>KOG1315|consensus

Probab=98.02  E-value=8.3e-06  Score=84.89  Aligned_cols=74  Identities=38%  Similarity=0.882  Sum_probs=63.2

Q ss_pred             CCCCCccccccccccCCcCcCccchhhHhhccCCCCccccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3899         329 TFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWK  402 (923)
Q Consensus       329 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~  402 (923)
                      .....++|.+|...+|-|+.||+.|++|+-+.||||+|++||+|..|+++|..++.+..+.+.........++.
T Consensus       105 ~~g~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~y~~l~~~~~lv~~~~~~~  178 (307)
T KOG1315|consen  105 SDGAVRYCDKCKCIKPDRAHHCSVCNRCVLKMDHHCPWINNCVGFRNYKFFLLFLFYTNLYSIYVLVTTLIGFT  178 (307)
T ss_pred             CCCCceeecccccccCCccccchhhhhhhhccccCCcceeceecccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33467899999999999999999999999999999999999999999999999988888777555544444433

>KOG0520|consensus

Probab=97.91  E-value=6.2e-06  Score=96.35  Aligned_cols=125  Identities=22%  Similarity=0.213  Sum_probs=104.8

Q ss_pred             cCCCCccHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCcHHHHHHHH-HCCCcccccCCCCCcHHHHH
Q psy3899          15 GGDLQATPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLV-AKGINVNLQDRNGMTALMWS   92 (923)
Q Consensus        15 ~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~-ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll-~~ga~vn~~d~~g~TpL~~A   92 (923)
                      +.-.|.|.||.|+..|..-+++.+++- |-.....|.+|.-.+|++| .||.+.+-+|+ -+|..++.+|..|+||||||
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcccchH
Confidence            345589999999999999999999986 7777778899999999944 55556555555 56899999999999999999


Q ss_pred             HHhcCCCchhHHHHhcCCCccc------ccccCCCcHHHHHHHhCcHHHHHHHHhc
Q psy3899          93 AYKVFSLDPTRLLITFGASTTI------QDKIHGNVALHWAIYAKNHVAITTLVSH  142 (923)
Q Consensus        93 a~~g~~~~vv~lLl~~ga~~~~------~d~~~g~T~L~~A~~~g~~~iv~~Ll~~  142 (923)
                      +.+|+ ..++..|++.|++.+.      .+. .|.|+-..|..+|+..+--+|-++
T Consensus       649 a~~G~-e~l~a~l~~lga~~~~~tdps~~~p-~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  649 AFRGR-EKLVASLIELGADPGAVTDPSPETP-GGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hhcCH-HHHHHHHHHhccccccccCCCCCCC-CCCchhhhhhcccccchHHHHhhh
Confidence            99996 9999999988877643      333 699999999999999999888776

>KOG0511|consensus

Probab=97.70  E-value=9.4e-05  Score=76.24  Aligned_cols=85  Identities=28%  Similarity=0.377  Sum_probs=64.2

Q ss_pred             CcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcH
Q psy3899         546 VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHT  625 (923)
Q Consensus       546 ~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~  625 (923)
                      .--|..||+.|+.+.|+.|++.|.++|..+.. ..+||.+|+..||.++|++|+++||--..-..+|.-+ |+++-+.  
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~f-D~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLnd--  112 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRF-DSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALND--  112 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcc-cccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhhH--
Confidence            34588999999999999999999999987644 7899999999999999999999998655544566655 4444432  


Q ss_pred             HHHHHHHHc
Q psy3899         626 RIVAYLVAK  634 (923)
Q Consensus       626 ~~v~~Ll~~  634 (923)
                      .+=++|+.+
T Consensus       113 ~IR~mllsy  121 (516)
T KOG0511|consen  113 RIRRMLLSY  121 (516)
T ss_pred             HHHHHHHHH
Confidence            334455554

>KOG2505|consensus

Probab=96.75  E-value=0.0016  Score=70.01  Aligned_cols=65  Identities=15%  Similarity=0.141  Sum_probs=51.6

Q ss_pred             CcchHHHHHhcCCCCccccc-----CCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Q psy3899         658 SLDPTRLLITFGASTTIQDK-----IHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEE  722 (923)
Q Consensus       658 ~~~~~~~Ll~~ga~~~~~d~-----~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~  722 (923)
                      ..+.++.|.+.+.+.|.+-.     ..-.|+||+|+.+|+-++|.+||+.|+|+-++|..|+||++++..
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCccccccc
Confidence            45567777777776654322     135689999999999999999999999999999999999988774

>smart00248 ANK ankyrin repeats

Probab=96.54  E-value=0.0036  Score=39.97  Aligned_cols=26  Identities=50%  Similarity=0.809  Sum_probs=13.1

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCC
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGAD   44 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~   44 (923)
                      |.||+|+|+..|+.++++.|++.|.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            44555555555555555555554443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=96.52  E-value=0.0026  Score=68.54  Aligned_cols=62  Identities=18%  Similarity=0.174  Sum_probs=53.4

Q ss_pred             CchhHHHHhcCCCcccc------cccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHH
Q psy3899          99 LDPTRLLITFGASTTIQ------DKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLE  161 (923)
Q Consensus        99 ~~vv~lLl~~ga~~~~~------d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~  161 (923)
                      .+-+..|.+++.+.|..      +. .-.|+||+|+.+|.-++|.+||+.|+|+..+|..|.||.+++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~-ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDY-LTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCccccccccccccc-ccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            56678888887776532      33 4579999999999999999999999999999999999999988

>smart00248 ANK ankyrin repeats

Probab=96.44  E-value=0.005  Score=39.27  Aligned_cols=29  Identities=21%  Similarity=0.318  Sum_probs=25.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy3899         679 HGNVALHWAIYAKNHVAITTLVSHTSSLE  707 (923)
Q Consensus       679 ~g~TpLh~A~~~~~~~~v~~Ll~~gad~~  707 (923)
                      .|.||+|+|+..++.++++.|+++|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            37899999999999999999999988664

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.12  E-value=0.32  Score=47.54  Aligned_cols=47  Identities=21%  Similarity=0.186  Sum_probs=36.7

Q ss_pred             CcchHHHHHhcC-CCCccc--ccCCCChHHHHHHHcCCHHHHHHHHHCCC
Q psy3899         658 SLDPTRLLITFG-ASTTIQ--DKIHGNVALHWAIYAKNHVAITTLVSHTS  704 (923)
Q Consensus       658 ~~~~~~~Ll~~g-a~~~~~--d~~~g~TpLh~A~~~~~~~~v~~Ll~~ga  704 (923)
                      +..+++..+.+| +++|..  ..+.|.|-|.-|+++++.+++.+||++||
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            455677777777 566542  22379999999999999999999999998

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=90.93  E-value=0.85  Score=44.73  Aligned_cols=90  Identities=16%  Similarity=0.169  Sum_probs=64.3

Q ss_pred             ChHHHHHHHhCcHHHHHHHHHC----CCcccccCCCCCcHHHHHHHh-cCCCchhHHHHhcC-CCcccc---cccCCCcH
Q psy3899          53 STCIHQAAQFGHTRIVAYLVAK----GINVNLQDRNGMTALMWSAYK-VFSLDPTRLLITFG-ASTTIQ---DKIHGNVA  123 (923)
Q Consensus        53 ~TpLh~Aa~~g~~~iv~~Ll~~----ga~vn~~d~~g~TpL~~Aa~~-g~~~~vv~lLl~~g-a~~~~~---d~~~g~T~  123 (923)
                      .+++-+|+.++..+|+-+|+..    ..|+-... .+.--+.++-.. |-+..|.+..+++| +++|.+   -+ .|.|.
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~-~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~N-SGdtM  257 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASME-KELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVN-SGDTM  257 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecchhhhcC-cchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccC-CcchH
Confidence            4788889988889999999975    11211111 133345555543 33577888888888 677653   33 69999


Q ss_pred             HHHHHHhCcHHHHHHHHhcCC
Q psy3899         124 LHWAIYAKNHVAITTLVSHTS  144 (923)
Q Consensus       124 L~~A~~~g~~~iv~~Ll~~ga  144 (923)
                      |.-|...++.++++.|+++||
T Consensus       258 LDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  258 LDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HHhHHhcCcHHHHHHHHHcCc
Confidence            999999999999999999998

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=89.60  E-value=2.6  Score=40.41  Aligned_cols=138  Identities=15%  Similarity=0.082  Sum_probs=88.4

Q ss_pred             cHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHH
Q psy3899         547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR  626 (923)
Q Consensus       547 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~  626 (923)
                      -.|..|++.+-+++++..-+...+-    -...++.+-.||+..+.++|+++-+.   ...  .+-.+.+.+|....+.+
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qn---L~i--~~~~~iFdIA~~~kDls  118 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQN---LHI--YNPEDIFDIAFAKKDLS  118 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhc---cCC--CCchhhhhhhhhccchh
Confidence            4677899999999988877654322    12257788899999999999999543   222  22345677888877776


Q ss_pred             HH----HHHHHcCCCCCccCC--CCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHH
Q psy3899         627 IV----AYLVAKGINVNLQDR--NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV  700 (923)
Q Consensus       627 ~v----~~Ll~~g~~~~~~d~--~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll  700 (923)
                      +.    .++.++...-...|.  .-..-|.+|+.+| -...+--.+++|-+++.       +.|-.|+.+++..++.+++
T Consensus       119 LyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kg-ll~F~letlkygg~~~~-------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  119 LYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKG-LLPFVLETLKYGGNVDI-------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCC-CHHHHHHHHHcCCcccH-------HHHHHHHHhhHHHHHHHhh
Confidence            52    233333222111110  0112356788777 55555556677776542       7889999999998888876


Q ss_pred             H
Q psy3899         701 S  701 (923)
Q Consensus       701 ~  701 (923)
                      .
T Consensus       191 ~  191 (192)
T PF03158_consen  191 R  191 (192)
T ss_pred             c
Confidence            4

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=86.76  E-value=1.1  Score=36.74  Aligned_cols=48  Identities=17%  Similarity=0.443  Sum_probs=38.3

Q ss_pred             ccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHC
Q psy3899          20 ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK   74 (923)
Q Consensus        20 ~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~   74 (923)
                      ...|..|+..|+.|+++.+++.+ .++      ...+..|+..-+-+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            35678899999999999988765 222      3578899999999999999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	923
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		2e-65
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-22
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-14
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-21
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-13
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		5e-20
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-20
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-12
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-19
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-05
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-19
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-09
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		5e-18
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		6e-12
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-18
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-07
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		6e-18
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-07
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		7e-18
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		4e-12
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-17
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-09
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-17
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		5e-11
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-17
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-12
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		6e-17
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		4e-10
2xee_A	157	Structural Determinants For Improved Thermal Stabil		6e-17
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-10
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-16
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-07
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-16
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-09
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-16
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		4e-13
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		3e-16
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		8e-08
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-16
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-12
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-15
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-10
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-15
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		4e-15
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-15
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-10
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		4e-15
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-15
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-14
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-13
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		3e-13
1uoh_A	226	Human Gankyrin Length = 226		3e-13
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-13
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		5e-13
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		5e-13
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-05
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-12
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-12
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-12
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-12
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-12
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		5e-12
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		5e-12
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		5e-12
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-10
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-10
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-10
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		5e-10
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		6e-10
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		9e-10
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		1e-09
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		1e-09
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		1e-09
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-09
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		4e-09
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		5e-09
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		5e-09
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		5e-09
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		1e-08
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		1e-08
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		1e-06
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		1e-08
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		1e-08
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		1e-06
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		1e-08
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		1e-08
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		7e-05
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		1e-08
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		1e-08
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		7e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-08
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-08
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		1e-08
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		1e-08
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		1e-08
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		1e-08
3so8_A	162	Crystal Structure Of Ankra Length = 162		1e-08
3so8_A	162	Crystal Structure Of Ankra Length = 162		1e-08
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		2e-08
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		2e-08
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		4e-08
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		4e-08
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		5e-08
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		5e-08
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		5e-08
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		5e-08
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		8e-08
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		8e-08
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		8e-08
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		8e-08
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-07
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-07
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		1e-07
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		1e-07
1ycs_B	239	P53-53bp2 Complex Length = 239		4e-07
1ycs_B	239	P53-53bp2 Complex Length = 239		4e-07
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		4e-07
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		7e-07
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		4e-07
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		4e-07
2xen_A	91	Structural Determinants For Improved Thermal Stabil		5e-07
2xen_A	91	Structural Determinants For Improved Thermal Stabil		5e-07
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		6e-07
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		6e-07
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		7e-07
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		2e-06
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		3e-06
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		3e-06
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		3e-06
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		5e-06
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		1e-05
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		3e-05
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		2e-05
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		2e-05
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		2e-05
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		3e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		3e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		3e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		3e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		3e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		3e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		4e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		4e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		7e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		4e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		4e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		7e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		4e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		4e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		7e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		6e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		6e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		8e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		8e-05
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		1e-04
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		1e-04

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score =  248 bits (632), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 149/193 (77%)
Query: 530 QFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ 589
           + VEAG DV +PD E VTLLHWAAINNRI+++KY+IS+GAIVD +GGDL +TPLHWATRQ
Sbjct: 27  ELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ 86
Query: 590 GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           GHL  VV L+++GADP+L+D EG +CIH AAQFGHT IVAYL+AKG +V++ D+NGMT L
Sbjct: 87  GHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPL 146
Query: 650 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIP 709
           MW+AY+  S+DPTRLL+TF  S  + DK H N ALHWA+ A N   I+ L+   ++++  
Sbjct: 147 MWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ 206
Query: 710 NAQGLTPFMLLEE 722
           N +G +   L ++
Sbjct: 207 NIKGESALDLAKQ 219

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score =  102 bits (254), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 56/119 (47%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            +E G DVN  DS+  T LH+AA     EI+K  IS+GA V+A   D + TPLH+A ++G
Sbjct: 23  LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR-TPLHYAAKEG 81
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           H + V LLI  GAD    DS+G T +H AA+ GH  IV  L++KG +VN  D +G T L
Sbjct: 82  HKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPL 140

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
           A   G+ D V  LI++GAD    DS+G T +H AA+ GH  IV  L++KG +VN +D +G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
            T L ++A K    +  +LLI+ GA    +D   G   LH+A    +   +  L+S  + 
Sbjct: 71  RTPLHYAA-KEGHKEIVKLLISKGADVNAKDS-DGRTPLHYAAKEGHKEIVKLLISKGAD 128
Query: 706 LEIPNAQGLTPFMLLEEN 723
           +   ++ G TP  L  E+
Sbjct: 129 VNTSDSDGRTPLDLAREH 146

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 99.4 bits (246), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 55/119 (46%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            +E G DVN  DS+  T LH AA N   E++K  IS+GA V+A   D + TPLH A   G
Sbjct: 23  LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR-TPLHHAAENG 81
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           H + V LLI  GAD    DS+G T +H AA+ GH  +V  L++KG +VN  D +G T L
Sbjct: 82  HKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPL 140

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
           A   G+ D V  LI++GAD    DS+G T +H AA+ GH  +V  L++KG +VN +D +G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
            T L  +A      +  +LLI+ GA    +D   G   LH A    +   +  L+S  + 
Sbjct: 71  RTPLHHAAENGHK-EVVKLLISKGADVNAKDS-DGRTPLHHAAENGHKEVVKLLISKGAD 128
Query: 706 LEIPNAQGLTPFMLLEEN 723
           +   ++ G TP  L  E+
Sbjct: 129 VNTSDSDGRTPLDLAREH 146

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 61/171 (35%), Positives = 91/171 (53%), Gaps = 6/171 (3%)
Query: 549 LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM 608
           LH AA    ++I    +  GA +D    D Q TPL  A    HL++V  LI+ GA     
Sbjct: 15  LHAAAEAGHVDICHMLVQAGANIDTCSED-QRTPLMEAAENNHLEAVKYLIKAGALVDPK 73
Query: 609 DSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSA-YKVFSLDPTRLLI 666
           D+EGSTC+H AA+ GH  +V YL++ G ++VN QD  G T ++W+  YK   +D  +LL+
Sbjct: 74  DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK--HVDLVKLLL 131
Query: 667 TFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPF 717
           + G+   I+D    N+ LHWA ++        L++    L   N  G +P 
Sbjct: 132 SKGSDINIRDN-EENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPL 181

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 96.3 bits (238), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 53/119 (44%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            +E G D N  DS+  T LH+AA N   EI+K  +S+GA  +A   D + TPLH+A   G
Sbjct: 23  LLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR-TPLHYAAENG 81
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           H + V LL+  GADP   DS+G T +H AA+ GH  IV  L++KG + N  D +G T L
Sbjct: 82  HKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPL 140

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 2/138 (1%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
           A   G+ D V  L+++GADP   DS+G T +H AA+ GH  IV  L++KG + N +D +G
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
            T L ++A      +  +LL++ GA    +D   G   LH+A    +   +  L+S  + 
Sbjct: 71  RTPLHYAAENGHK-EIVKLLLSKGADPNAKDS-DGRTPLHYAAENGHKEIVKLLLSKGAD 128
Query: 706 LEIPNAQGLTPFMLLEEN 723
               ++ G TP  L  E+
Sbjct: 129 PNTSDSDGRTPLDLAREH 146

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/119 (43%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            +E G DVN  DS+  T LH AA N   E++K  +SQGA  +A   D + TPLH A   G
Sbjct: 23  LLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK-TPLHLAAENG 81
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           H + V LL+  GADP   DS+G T +H AA+ GH  +V  L+++G + N  D +G T L
Sbjct: 82  HKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPL 140

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 35/138 (25%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
           A   G+ D V  L+++GAD    DS+G T +H AA+ GH  +V  L+++G + N +D +G
Sbjct: 11  AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
            T                                    LH A    +   +  L+S  + 
Sbjct: 71  KTP-----------------------------------LHLAAENGHKEVVKLLLSQGAD 95
Query: 706 LEIPNAQGLTPFMLLEEN 723
               ++ G TP  L  EN
Sbjct: 96  PNAKDSDGKTPLHLAAEN 113

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/116 (44%), Positives = 71/116 (61%), Gaps = 3/116 (2%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLD 593
           G DVN  D++  T LH AA N  +EI++  +  GA V+A   DL   TPLH A   GHL+
Sbjct: 37  GADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNA--SDLTGITPLHLAAATGHLE 94
Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
            V +L++HGAD    D++G T +H AA++GH  IV  L+  G +VN QD+ G TA 
Sbjct: 95  IVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAF 150

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
           G DL    L  A R G  D V +L+ +GAD    D++G T +H AA  GH  IV  L+  
Sbjct: 11  GSDLGKKLLE-AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKN 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
           G +VN  D  G+T L  +A     L+   +L+  GA     D   G+  LH A    +  
Sbjct: 70  GADVNASDLTGITPLHLAA-ATGHLEIVEVLLKHGADVNAYDN-DGHTPLHLAAKYGHLE 127
Query: 695 AITTLVSHTSSLEIPNAQGLTPF 717
            +  L+ H + +   +  G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 90.1 bits (222), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/115 (43%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
           G DVN  D+  +T LH AA    +EI++  +  GA V+AI   + +TPLH A   GHL+ 
Sbjct: 37  GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID-IMGSTPLHLAALIGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           V +L++HGAD   +D+ G T +H AA  GH  IV  L+  G +VN QD+ G TA 
Sbjct: 96  VEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 46/114 (40%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 570 IVDAIGGDLQAT------PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
           I+ A G D+ AT      PLH A   GHL+ V +L++HGAD   +D  GST +H AA  G
Sbjct: 32  ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIG 91
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
           H  IV  L+  G +VN  D  G T L  +A  +  L+   +L+  GA    QDK
Sbjct: 92  HLEIVEVLLKHGADVNAVDTWGDTPLHLAAI-MGHLEIVEVLLKHGADVNAQDK 144

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 90.1 bits (222), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/115 (43%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
           G DVN  D+   T LH AA +  +EI++  +  GA VDA       TPLH A   GHL+ 
Sbjct: 37  GADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDA-SDVFGYTPLHLAAYWGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           V +L+++GAD   MDS+G T +H AA++G+  IV  L+  G +VN QD+ G TA 
Sbjct: 96  VEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAF 150

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
           G DL    L  A R G  D V +L+ +GAD    D+ G+T +H AA  GH  IV  L+  
Sbjct: 11  GSDLGRKLLE-AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKH 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
           G +V+  D  G T L  +AY    L+   +L+  GA     D   G   LH A       
Sbjct: 70  GADVDASDVFGYTPLHLAAY-WGHLEIVEVLLKNGADVNAMDS-DGMTPLHLAAKWGYLE 127
Query: 695 AITTLVSHTSSLEIPNAQGLTPF 717
            +  L+ H + +   +  G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 89.7 bits (221), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 51/120 (42%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQ 589
            +  G DVN  D+  +T LH AA++  +EI++  +  GA VDA   D+   TPLH A   
Sbjct: 33  LIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDA--ADVYGFTPLHLAAMT 90
Query: 590 GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           GHL+ V +L+++GAD    D  GST +H AA  GH  IV  L+  G +VN QD+ G TA 
Sbjct: 91  GHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAF 150

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
           G DL    L  A R G  D V +LI +GAD   +D+ G T +H AA  GH  IV  L+  
Sbjct: 11  GSDLGKKLLE-AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKH 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
           G +V+  D  G T L  +A     L+   +L+ +GA     D + G+  LH A    +  
Sbjct: 70  GADVDAADVYGFTPLHLAAM-TGHLEIVEVLLKYGADVNAFD-MTGSTPLHLAADEGHLE 127
Query: 695 AITTLVSHTSSLEIPNAQGLTPF 717
            +  L+ + + +   +  G T F
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAF 150

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 89.7 bits (221), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 51/116 (43%), Positives = 70/116 (60%), Gaps = 3/116 (2%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQ-ATPLHWATRQGHLD 593
           G DVN  D+  +T LH AA    +EI++  +  GA V+AI  D+  +TPLH A   GHL+
Sbjct: 37  GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI--DIXGSTPLHLAALIGHLE 94
Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
            V +L++HGAD   +D+ G T +H AA  GH  IV  L+  G +VN QD+ G TA 
Sbjct: 95  IVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 46/114 (40%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 570 IVDAIGGDLQAT------PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
           I+ A G D+ AT      PLH A   GHL+ V +L++HGAD   +D  GST +H AA  G
Sbjct: 32  ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIG 91
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
           H  IV  L+  G +VN  D  G T L  +A  +  L+   +L+  GA    QDK
Sbjct: 92  HLEIVEVLLKHGADVNAVDTWGDTPLHLAAI-MGHLEIVEVLLKHGADVNAQDK 144

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/115 (43%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
           G DVN  D +  T LH AA    +EI++  +  GA V+A   D   TPLH A R+GHL+ 
Sbjct: 37  GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           V +L++ GAD    D +G T +H AA+ GH  IV  L+  G +VN QD+ G TA 
Sbjct: 96  VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAF 150

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
           G DL    L  A R G  D V +L+ +GAD    D +G T +H AA+ GH  IV  L+  
Sbjct: 11  GSDLGKKLLE-AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
           G +VN +D++G T L  +A +   L+   +L+  GA    +DK  G   LH A    +  
Sbjct: 70  GADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLE 127
Query: 695 AITTLVSHTSSLEIPNAQGLTPF 717
            +  L+   + +   +  G T F
Sbjct: 128 IVEVLLKAGADVNAQDKFGKTAF 150

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/115 (43%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
           G DVN  D+   T LH AA N  +EI++  +  GA V+A+      TPL  A   GHL+ 
Sbjct: 37  GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD-HAGMTPLRLAALFGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           V +L+++GAD    D EG T +H AA FGH  IV  L+  G +VN QD+ G TA 
Sbjct: 96  VEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF 150

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/115 (39%), Positives = 61/115 (53%), Gaps = 9/115 (7%)
Query: 570 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
           I+ A G D+ A      TPLH A   GHL+ V +L+++GAD   +D  G T +  AA FG
Sbjct: 32  ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG 91
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS-LDPTRLLITFGASTTIQDK 677
           H  IV  L+  G +VN  D  G T L  +A  +F  L+   +L+  GA    QDK
Sbjct: 92  HLEIVEVLLKNGADVNANDMEGHTPLHLAA--MFGHLEIVEVLLKNGADVNAQDK 144

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/115 (44%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
           G DVN  D    T LH AA    +EI++  +  GA V+A    L  TPLH A R+GHL+ 
Sbjct: 37  GADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNA-KDSLGVTPLHLAARRGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           V +L+++GAD    DS G T +H AA+ GH  IV  L+  G +VN QD+ G TA 
Sbjct: 96  VEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAF 150

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 570 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
           I+ A G D+ A      TPLH A   GHL+ V +L+++GAD    DS G T +H AA+ G
Sbjct: 32  ILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRG 91
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
           H  IV  L+  G +VN  D +G T L  +A K   L+   +L+  GA    QDK
Sbjct: 92  HLEIVEVLLKNGADVNASDSHGFTPLHLAA-KRGHLEIVEVLLKNGADVNAQDK 144

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 86.7 bits (213), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/113 (43%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
           G DVN  D +  T LH AA    +EI++  +  GA V+A   D   TPLH A R+GHL+ 
Sbjct: 25  GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEI 83
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 647
           V +L++ GAD    D +G T +H AA+ GH  IV  L+  G +VN QD+ G T
Sbjct: 84  VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
           A R G  D V +L+ +GAD    D +G T +H AA+ GH  IV  L+  G +VN +D++G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
            T L  +A +   L+   +L+  GA    +DK  G   LH A    +   +  L+   + 
Sbjct: 69  YTPLHLAA-REGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 706 LEIPNAQGLTPFML 719
           +   +  G TPF L
Sbjct: 127 VNAQDKFGKTPFDL 140

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 86.7 bits (213), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/113 (43%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
           G DVN  D +  T LH AA    +EI++  +  GA V+A   D   TPLH A R+GHL+ 
Sbjct: 25  GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEI 83
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 647
           V +L++ GAD    D +G T +H AA+ GH  IV  L+  G +VN QD+ G T
Sbjct: 84  VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
           A R G  D V +L+ +GAD    D +G T +H AA+ GH  IV  L+  G +VN +D++G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
            T L  +A +   L+   +L+  GA    +DK  G   LH A    +   +  L+   + 
Sbjct: 69  YTPLHLAA-REGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 706 LEIPNAQGLTPFMLLEEN 723
           +   +  G TPF L  +N
Sbjct: 127 VNAQDKFGKTPFDLAIDN 144

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/115 (42%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
           G DVN  D    T LH AAI   +EI++  +  GA V+A    +  TPLH A   GHL+ 
Sbjct: 37  GADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNA-ADKMGDTPLHLAALYGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           V +L+++GAD    D+ G T +H AA  GH  IV  L+  G +VN QD+ G TA 
Sbjct: 96  VEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAF 150

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 65/143 (45%), Gaps = 3/143 (2%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
           G DL    L  A R G  D V +L+ +GAD    D  G T +H AA  GH  IV  L+  
Sbjct: 11  GSDLGKKLLE-AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKH 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
           G +VN  D+ G T L  +A     L+   +L+  GA     D  +G   LH A  A +  
Sbjct: 70  GADVNAADKMGDTPLHLAAL-YGHLEIVEVLLKNGADVNATDT-YGFTPLHLAADAGHLE 127
Query: 695 AITTLVSHTSSLEIPNAQGLTPF 717
            +  L+ + + +   +  G T F
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAF 150

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
           G DVN  D   +T LH AA N ++EI++  +  GA V+A       TPLH A   GHL+ 
Sbjct: 29  GADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNA-SDSAGITPLHLAAYDGHLEI 87
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           V +L++HGAD    D  G T +H AA  G   IV  L+  G +VN QD  G+TA 
Sbjct: 88  VEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAF 142

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/145 (33%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
Query: 573 AIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 632
           A G DL    L  A   G  D V +L+ +GAD    D  G T +H AA  G   IV  L+
Sbjct: 1   AFGQDLGKKLLE-AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLL 59
Query: 633 AKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN 692
             G +VN  D  G+T L  +AY    L+   +L+  GA     D+  G   LH A  +  
Sbjct: 60  KNGADVNASDSAGITPLHLAAYD-GHLEIVEVLLKHGADVNAYDRA-GWTPLHLAALSGQ 117
Query: 693 HVAITTLVSHTSSLEIPNAQGLTPF 717
              +  L+ H + +   +A GLT F
Sbjct: 118 LEIVEVLLKHGADVNAQDALGLTAF 142

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 3/116 (2%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQ-ATPLHWATRQGHLD 593
           G DVN  D+   T LH AA    +EI++  +  GA V+A+  D   +TPLH A ++GHL+
Sbjct: 37  GADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL--DFSGSTPLHLAAKRGHLE 94
Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
            V +L+++GAD    D+ GST +H AA  GH  IV  L+  G +VN QD+ G TA 
Sbjct: 95  IVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAF 150

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/114 (40%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 570 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
           I+ A G D+ A      TPLH A R GHL+ V +L+++GAD   +D  GST +H AA+ G
Sbjct: 32  ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRG 91
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
           H  IV  L+  G +VN  D  G T L  +A     L+   +L+ +GA    QDK
Sbjct: 92  HLEIVEVLLKYGADVNADDTIGSTPLHLAA-DTGHLEIVEVLLKYGADVNAQDK 144

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/115 (44%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
           G DVN  D    T LH AA    +EI++  +  GA V+A   +  ATPLH A   GHL+ 
Sbjct: 37  GADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNA-WDNYGATPLHLAADNGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           V +L++HGAD    D EG T +H AA  GH  IV  L+  G +VN QD+ G TA 
Sbjct: 96  VEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAF 150

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 65/143 (45%), Gaps = 3/143 (2%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
           G DL    L  A R G  D V +L+ +GAD    D  G T +H AA+ GH  IV  L+  
Sbjct: 11  GSDLGKKLLE-AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKY 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
           G +VN  D  G T L  +A     L+   +L+  GA    +D   G   LH A Y  +  
Sbjct: 70  GADVNAWDNYGATPLHLAADN-GHLEIVEVLLKHGADVNAKD-YEGFTPLHLAAYDGHLE 127
Query: 695 AITTLVSHTSSLEIPNAQGLTPF 717
            +  L+ + + +   +  G T F
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAF 150

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
           G DVN  D    T LH AA    +EI++  +  GA V+A    L  TPLH A  +GHL+ 
Sbjct: 37  GADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNA-DDSLGVTPLHLAADRGHLEV 95
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           V +L+++GAD    D  G T +H AA  GH  IV  L+  G +VN QD+ G TA 
Sbjct: 96  VEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAF 150

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/114 (39%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 570 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
           I+ A G D+ A      TPLH A   GHL+ V +L+++GAD    DS G T +H AA  G
Sbjct: 32  ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRG 91
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
           H  +V  L+  G +VN  D NG T L  +A  +  L+   +L+  GA    QDK
Sbjct: 92  HLEVVEVLLKNGADVNANDHNGFTPLHLAA-NIGHLEIVEVLLKHGADVNAQDK 144

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
           G DVN  D +  T LH AA     EI++  +  GA V+A   D   TPLH A   GHL+ 
Sbjct: 37  GADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD-GWTPLHLAADNGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           V +L+++GAD    D+ G T +H AA  GH  IV  L+  G +VN QD+ G TA 
Sbjct: 96  VEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAF 150

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
           G DL    L  A R G  D V +L+ +GAD    D +GST +H AA  GH  IV  L+  
Sbjct: 11  GSDLGKKLLE-AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKH 69
Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
           G +VN +D +G T L  +A     L+   +L+ +GA    QD  +G   LH A    +  
Sbjct: 70  GADVNARDTDGWTPLHLAADN-GHLEIVEVLLKYGADVNAQDA-YGLTPLHLAADRGHLE 127
Query: 695 AITTLVSHTSSLEIPNAQGLTPF 717
            +  L+ H + +   +  G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
           G DVN  D    T LH AA    +EI++  +  GA V+A    L +TPLH A   GHL+ 
Sbjct: 37  GADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD-TLGSTPLHLAAHFGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           V +L+++GAD    D  G T +H AA  GH  IV  L+  G +VN QD+ G TA 
Sbjct: 96  VEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAF 150

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 79/142 (55%), Gaps = 5/142 (3%)
Query: 552 AAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLDSVVLLIQHGADPTLMDS 610
           AA   R + ++  ++ GA V+A   D+   TPLH A   GHL+ V +L+++GAD    D+
Sbjct: 21  AARAGRDDEVRILMANGADVNA--ADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDT 78
Query: 611 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 670
            GST +H AA FGH  IV  L+  G +VN +D NG+T L  +A +   L+   +L+ +GA
Sbjct: 79  LGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANR-GHLEIVEVLLKYGA 137
Query: 671 STTIQDKIHGNVALHWAIYAKN 692
               QDK  G  A   +I   N
Sbjct: 138 DVNAQDKF-GKTAFDISINNGN 158

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLD 593
           G DVN  D   +T LH    N  +EI++  +   A V+A   D    TPLH A  +GHL+
Sbjct: 37  GADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNA--SDKSGWTPLHLAAYRGHLE 94
Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
            V +L+++GAD   MD +G T +H AA+ GH  IV  L+  G +VN QD+ G TA 
Sbjct: 95  IVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAF 150

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 570 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
           I+ A G D+ A      TPLH     GHL+ + +L+++ AD    D  G T +H AA  G
Sbjct: 32  ILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRG 91
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
           H  IV  L+  G +VN  D  G T L  +A +   L+   +L+ +GA    QDK
Sbjct: 92  HLEIVEVLLKYGADVNAMDYQGYTPLHLAA-EDGHLEIVEVLLKYGADVNAQDK 144

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/105 (42%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            +EAG DVN  D    T LH AA N  +E++K  +  GA V+A   + + TPLH A R G
Sbjct: 21  LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNG 79
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 635
           HL+ V LL++ GAD    D  G T +H AA+ GH  +V  L+  G
Sbjct: 80  HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 5/121 (4%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
           TPLH A R GHL+ V LL++ GAD    D  G T +H AA+ GH  +V  L+  G +VN 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN-HVAITTL 699
           +D+NG T L  +A +   L+  +LL+  GA    +DK +G   LH A  A+N H+ +  L
Sbjct: 64  KDKNGRTPLHLAA-RNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLA--ARNGHLEVVKL 119
Query: 700 V 700
           +
Sbjct: 120 L 120

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/115 (40%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
           G D N  D    T LH AA    +EI++  +  GA V+A+  +   TPLH A   GHL+ 
Sbjct: 25  GADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN-GTTPLHLAASLGHLEI 83
Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           V +L+++GAD    D+ G T ++ AA +GH  IV  L+  G +VN QD+ G TA 
Sbjct: 84  VEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAF 138

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 570 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
           I+ A G D  A      TPLH A   GHL+ V +L+++GAD   +D+ G+T +H AA  G
Sbjct: 20  ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLG 79
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
           H  IV  L+  G +VN +D  G+T L  +AY    L+   +L+  GA    QDK
Sbjct: 80  HLEIVEVLLKYGADVNAKDATGITPLYLAAY-WGHLEIVEVLLKHGADVNAQDK 132

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/147 (31%), Positives = 82/147 (55%), Gaps = 2/147 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            ++ G  VN+ D    + LH AA   R EI+K  + +GA V+A+  +   TPLH+A  + 
Sbjct: 60  LLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN-GCTPLHYAASKN 118
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
             +  V+L++ GA+P   D   +T +H+AA  G+ +++  L+    + N+QD  G T L 
Sbjct: 119 RHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLH 178
Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDK 677
            +  +   ++  +LL++ GAS  I++K
Sbjct: 179 LACDEE-RVEEAKLLVSQGASIYIENK 204

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/147 (31%), Positives = 82/147 (55%), Gaps = 2/147 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            ++ G  VN+ D    + LH AA   R EI+K  + +GA V+A+  +   TPLH+A  + 
Sbjct: 59  LLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN-GCTPLHYAASKN 117
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
             +  V+L++ GA+P   D   +T +H+AA  G+ +++  L+    + N+QD  G T L 
Sbjct: 118 RHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLH 177
Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDK 677
            +  +   ++  +LL++ GAS  I++K
Sbjct: 178 LACDEE-RVEEAKLLVSQGASIYIENK 203

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/147 (31%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            ++ G  VN+ D    + LH AA   R EI+K  + +GA V+A+  +   TPLH+A  + 
Sbjct: 59  LLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQN-GCTPLHYAASKN 117
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
             +  V+L++ GA+P   D   +T +H+AA  G+ ++V  L+    + N+QD  G T L 
Sbjct: 118 RHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLH 177
Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDK 677
            +  +   ++  + L+T GAS  I++K
Sbjct: 178 LACDEE-RVEEAKFLVTQGASIYIENK 203

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           ++  ++ GA V+A+  D   TPLH A ++GHL+ V +L++HGAD    DS G T +H AA
Sbjct: 30  VRILMANGADVNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAA 88
Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
             GH  IV  L+  G +VN QD+ G TA 
Sbjct: 89  TVGHLEIVEVLLEYGADVNAQDKFGKTAF 117

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 561 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 620
           ++  ++ GA V+A+  D   TPLH A ++GHL+ V +L++HGAD    DS G T +H AA
Sbjct: 30  VRILMANGADVNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAA 88
Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
             GH  IV  L+  G +VN QD+ G TA 
Sbjct: 89  TVGHLEIVEVLLEYGADVNAQDKFGKTAF 117

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 85/188 (45%), Gaps = 3/188 (1%)
Query: 530 QFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ 589
             ++ G   N  + +  T LH AA     E+ KY +   A V+A   D Q TPLH A R 
Sbjct: 32  NLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARI 90
Query: 590 GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           GH + V LL+++ A+P L  + G T +H AA+ GH   V  L+ K  +     + G T L
Sbjct: 91  GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPL 150
Query: 650 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIP 709
             +A K   +    LL+   A      K +G   LH A++  N   +  L+    S   P
Sbjct: 151 HVAA-KYGKVRVAELLLERDAHPNAAGK-NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP 208
Query: 710 NAQGLTPF 717
              G TP 
Sbjct: 209 AWNGYTPL 216

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
           TPLH A R GHL+ V LL++ GAD    D  G T +H AA+ GH  +V  L+  G +VN 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
           +D+NG T L  +A +   L+  +LL+  GA
Sbjct: 64  KDKNGRTPLHLAA-RNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
           TPLH A R GHL+ V LL++ GAD    D  G T +H AA+ GH  +V  L+  G +VN 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGA 670
           +D+NG T L  +A +   L+  +LL+  GA
Sbjct: 64  KDKNGRTPLHLAA-RNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
           G T +H AA+ GH  +V  L+  G +VN +D+NG T L  +A +   L+  +LL+  GA 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA-RNGHLEVVKLLLEAGAD 60
Query: 672 TTIQDKIHGNVALHWAIYAKN-HVAITTLV 700
              +DK +G   LH A  A+N H+ +  L+
Sbjct: 61  VNAKDK-NGRTPLHLA--ARNGHLEVVKLL 87

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/147 (31%), Positives = 80/147 (54%), Gaps = 2/147 (1%)
Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            ++ G  VN+ D    + LH AA     EI+K  + +GA V+A+  +   TPLH+A  + 
Sbjct: 59  LLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQN-GCTPLHYAASKN 117
Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
             +  V+L++ GA+P   D   +T +H+AA  G+ ++V  L+    + N+QD  G T L 
Sbjct: 118 RHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLH 177
Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDK 677
            +  +   ++  + L+T GAS  I++K
Sbjct: 178 LACDEE-RVEEAKFLVTQGASIYIENK 203

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           ++  ++ GA V+A+  D   TPLH A ++GHL+ V +L++HGAD    D  G T +H AA
Sbjct: 30  VRILMANGADVNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAA 88
Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
             GH  IV  L+  G +VN QD+ G TA 
Sbjct: 89  TVGHLEIVEVLLEYGADVNAQDKFGKTAF 117

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 561 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 620
           ++  ++ GA V+A+  D   TPLH A ++GHL+ V +L++HGAD    D  G T +H AA
Sbjct: 30  VRILMANGADVNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAA 88
Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
             GH  IV  L+  G +VN QD+ G TA 
Sbjct: 89  TVGHLEIVEVLLEYGADVNAQDKFGKTAF 117

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           ++  ++ GA V+A+  D   TPLH A ++GHL+ V +L++HGAD    D  G T +H AA
Sbjct: 30  VRILMANGADVNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAA 88
Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
             GH  IV  L+  G +VN QD+ G TA 
Sbjct: 89  TVGHLEIVEVLLEYGADVNAQDKFGKTAF 117

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 561 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 620
           ++  ++ GA V+A+  D   TPLH A ++GHL+ V +L++HGAD    D  G T +H AA
Sbjct: 30  VRILMANGADVNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAA 88
Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
             GH  IV  L+  G +VN QD+ G TA 
Sbjct: 89  TVGHLEIVEVLLEYGADVNAQDKFGKTAF 117

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 10  IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
           I+ A G D+ A      TPLH A    HL+ V +L++HGAD    D++GST +H AA FG
Sbjct: 32  ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFG 91
Query: 64  HTRIVAYLVAKGINVNLQDRNGMTAL 89
           H  IV  L+  G +VN QD+ G TA 
Sbjct: 92  HLEIVEVLLKHGADVNAQDKFGKTAF 117

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 570 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
           I+ A G D+ A      TPLH A    HL+ V +L++HGAD    D++GST +H AA FG
Sbjct: 32  ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFG 91
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTAL 649
           H  IV  L+  G +VN QD+ G TA 
Sbjct: 92  HLEIVEVLLKHGADVNAQDKFGKTAF 117

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Query: 534 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 593
           +G  VN    +  + LH AA++ R +++   +  GA   A   D QA PLH A +QGH  
Sbjct: 75  SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNAD-QAVPLHLACQQGHFQ 133
Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 653
            V  L+   A P   D  G+T +  A   GH  +VA L+  G ++N  +  G TAL  + 
Sbjct: 134 VVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAV 193
Query: 654 YK--VFSLDPTRLLITFGASTTIQDK 677
            +  VF ++   LL+  GAS  + +K
Sbjct: 194 IEKHVFVVE---LLLLHGASVQVLNK 216

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           ++  ++ GA V+A+  D   TPLH A + GHL+ V +L+++GAD    D+ G T +H AA
Sbjct: 30  VRILMANGADVNALDED-GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAA 88
Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
             GH  IV  L+  G +VN QD+ G TA 
Sbjct: 89  IRGHLEIVEVLLKHGADVNAQDKFGKTAF 117

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 561 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 620
           ++  ++ GA V+A+  D   TPLH A + GHL+ V +L+++GAD    D+ G T +H AA
Sbjct: 30  VRILMANGADVNALDED-GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAA 88
Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
             GH  IV  L+  G +VN QD+ G TA 
Sbjct: 89  IRGHLEIVEVLLKHGADVNAQDKFGKTAF 117

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/93 (44%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
           T LH AA N   E +K  +S+GA V+A   D   TPLH A + GH + V LL+  GAD  
Sbjct: 11  TPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 639
               +G+T  H A + GH  IV  L AKG +VN
Sbjct: 70  ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
           G DVN  D   +T LH AA+N+ +EI++  +  GA V+AI   +  TPLH     GHL+ 
Sbjct: 37  GADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDA-IGETPLHLVAMYGHLEI 95
Query: 595 VVLLIQHGADPTLMDSEGST 614
           V +L++HGAD    D  G T
Sbjct: 96  VEVLLKHGADVNAQDKFGKT 115

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 570 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
           I+ A G D+ A      TPLH A    HL+ V +L+++GAD   +D+ G T +H  A +G
Sbjct: 32  ILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYG 91
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTAL 649
           H  IV  L+  G +VN QD+ G TA 
Sbjct: 92  HLEIVEVLLKHGADVNAQDKFGKTAF 117

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 530 QFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATR 588
           + VE    + + D E  T L WA  NNR+ I +  +S+G+ V+    D    TPL W+  
Sbjct: 53  KLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT--KDFSGKTPLMWSII 110
Query: 589 QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA 648
            G+ +    L++HGA+    + EG T +  A+++G + IV  L+  G +++ +D  G+TA
Sbjct: 111 FGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA 170

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 10  IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
           I+ A G D+ A      TPL+ AT  GHL+ V +L+++GAD   +D+ G T +H AA  G
Sbjct: 32  ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91
Query: 64  HTRIVAYLVAKGINVNLQDRNGMTAL 89
           H  I   L+  G +VN QD+ G TA 
Sbjct: 92  HLEIAEVLLKHGADVNAQDKFGKTAF 117

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 570 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
           I+ A G D+ A      TPL+ AT  GHL+ V +L+++GAD   +D+ G T +H AA  G
Sbjct: 32  ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTAL 649
           H  I   L+  G +VN QD+ G TA 
Sbjct: 92  HLEIAEVLLKHGADVNAQDKFGKTAF 117

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 537 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIG-GDLQATPLHWATRQGHLDSV 595
           D+N+ D    + LHWA    R  +++  I +GA ++ +  GD   TPLH A   GH D V
Sbjct: 26  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD--DTPLHLAASHGHRDIV 83
Query: 596 VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
             L+Q+ AD   ++  G+  +H A  +G  ++   LVA G  V++ ++ G
Sbjct: 84  QKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 133

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 537 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIG-GDLQATPLHWATRQGHLDSV 595
           D+N+ D    + LHWA    R  +++  I +GA ++ +  GD   TPLH A   GH D V
Sbjct: 31  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD--DTPLHLAASHGHRDIV 88
Query: 596 VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
             L+Q+ AD   ++  G+  +H A  +G  ++   LVA G  V++ ++ G
Sbjct: 89  QKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 138

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 65/258 (25%), Positives = 113/258 (43%), Gaps = 43/258 (16%)
Query: 530 QFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ 589
           + +E G D+N  + + +T LH A I++ ++++K+ +  GA ++    +    PLH A   
Sbjct: 58  RLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE-GWIPLHAAASC 116
Query: 590 GHLDSVVLLIQHGADPTLMDSEGSTCIH----------------------QAAQFGHTRI 627
           G+LD    LI  GA    ++SEG T +                       +AA+    RI
Sbjct: 117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI 176
Query: 628 V-----AYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNV 682
           +      +L +  IN     ++G TAL  +A K ++ +  +LLI       I+D   G  
Sbjct: 177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYT-EVLKLLIQARYDVNIKD-YDGWT 234
Query: 683 ALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKD 742
            LH A +     A   LV +   +E  N  G T F + +E+I         +  + EL+ 
Sbjct: 235 PLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI---------LGYLEELQ- 284
Query: 743 HYNTQQNIIHRFSKSKTT 760
               +QN++H   + K +
Sbjct: 285 ---KKQNLLHSEKREKKS 299

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 72/153 (47%), Gaps = 22/153 (14%)
Query: 536 QDVNEPDSE--TVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGH 591
           Q VN  D E    T LH+AA  NR+ +++Y +  GA V A   GG     PLH A   GH
Sbjct: 33  QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGG---LVPLHNACSYGH 89
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
            +   LL++HGA   + D    T +H+AA  G   I   L+  G +   ++R+G T L  
Sbjct: 90  YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD- 148
Query: 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 684
                        L+  G  T IQD + G+ AL
Sbjct: 149 -------------LVKDG-DTDIQDLLRGDAAL 167

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 72/153 (47%), Gaps = 22/153 (14%)
Query: 536 QDVNEPDSE--TVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGH 591
           Q VN  D E    T LH+AA  NR+ +++Y +  GA V A   GG     PLH A   GH
Sbjct: 31  QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGG---LVPLHNACSYGH 87
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
            +   LL++HGA   + D    T +H+AA  G   I   L+  G +   ++R+G T L  
Sbjct: 88  YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD- 146
Query: 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 684
                        L+  G  T IQD + G+ AL
Sbjct: 147 -------------LVKDG-DTDIQDLLRGDAAL 165

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 72/153 (47%), Gaps = 22/153 (14%)
Query: 536 QDVNEPDSE--TVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGH 591
           Q VN  D E    T LH+AA  NR+ +++Y +  GA V A   GG     PLH A   GH
Sbjct: 35  QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGG---LVPLHNACSYGH 91
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
            +   LL++HGA   + D    T +H+AA  G   I   L+  G +   ++R+G T L  
Sbjct: 92  YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD- 150
Query: 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 684
                        L+  G  T IQD + G+ AL
Sbjct: 151 -------------LVKDG-DTDIQDLLRGDAAL 169

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
           +P+H A R G LD++ +L++HGAD  + D  G+  IH A Q GHT +V++L A+  +++ 
Sbjct: 70  SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHR 128
Query: 81  QDRNGMTAL 89
           +D  G+T L
Sbjct: 129 RDARGLTPL 137

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
           +P+H A R G LD++ +L++HGAD  + D  G+  IH A Q GHT +V++L A+  +++ 
Sbjct: 70  SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHR 128
Query: 641 QDRNGMTAL 649
           +D  G+T L
Sbjct: 129 RDARGLTPL 137

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 597 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 656
           LL +    P  ++  G T + Q   FG T I   L+ +G + N+QD +G + +  +A   
Sbjct: 21  LLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 79
Query: 657 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 716
           F LD  ++L+  GA   + D   G + +H A+  + H A+ + ++  S L   +A+GLTP
Sbjct: 80  F-LDTLKVLVEHGADVNVPDGT-GALPIHLAV-QEGHTAVVSFLAAESDLHRRDARGLTP 136
Query: 717 FML 719
             L
Sbjct: 137 LEL 139

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
           +P+H A R G LD++ +L++HGAD  + D  G+  IH A Q GHT +V++L A+  +++ 
Sbjct: 76  SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHR 134
Query: 81  QDRNGMTAL 89
           +D  G+T L
Sbjct: 135 RDARGLTPL 143

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
           +P+H A R G LD++ +L++HGAD  + D  G+  IH A Q GHT +V++L A+  +++ 
Sbjct: 76  SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHR 134
Query: 641 QDRNGMTAL 649
           +D  G+T L
Sbjct: 135 RDARGLTPL 143

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 597 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 656
           LL +    P  ++  G T + Q   FG T I   L+ +G + N+QD +G + +  +A   
Sbjct: 27  LLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 85
Query: 657 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 716
           F LD  ++L+  GA   + D   G + +H A+  + H A+ + ++  S L   +A+GLTP
Sbjct: 86  F-LDTLKVLVEHGADVNVPDGT-GALPIHLAV-QEGHTAVVSFLAAESDLHRRDARGLTP 142
Query: 717 FML 719
             L
Sbjct: 143 LEL 145

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 8/89 (8%)
Query: 4   FISQGA---IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
            + QGA   + DA G     +P+H A R G LD++ +L++HGAD   +DS GS  IH A 
Sbjct: 62  LLKQGASPNVQDASG----TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 117
Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
           + GH+ +V++L  +  +++ +D +G+T L
Sbjct: 118 REGHSSVVSFLAPES-DLHHRDASGLTPL 145

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 8/89 (8%)
Query: 564 FISQGA---IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 620
            + QGA   + DA G     +P+H A R G LD++ +L++HGAD   +DS GS  IH A 
Sbjct: 62  LLKQGASPNVQDASG----TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 117
Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           + GH+ +V++L  +  +++ +D +G+T L
Sbjct: 118 REGHSSVVSFLAPES-DLHHRDASGLTPL 145

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 597 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 656
           LL +    P  ++  G T + Q   FG   +   L+ +G + N+QD +G + +  +A   
Sbjct: 29  LLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTG 87
Query: 657 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 716
           F LD  ++L+  GA     D   G++ +H AI  + H ++ + ++  S L   +A GLTP
Sbjct: 88  F-LDTLKVLVEHGADVNALDST-GSLPIHLAI-REGHSSVVSFLAPESDLHHRDASGLTP 144
Query: 717 FMLLEE 722
             L  +
Sbjct: 145 LELARQ 150

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 8/89 (8%)
Query: 4   FISQGA---IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
            + QGA   + DA G     +P+H A R G LD++ +L++HGAD   +DS GS  IH A 
Sbjct: 60  LLKQGASPNVQDASG----TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 115
Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
           + GH+ +V++L  +  +++ +D +G+T L
Sbjct: 116 REGHSSVVSFLAPES-DLHHRDASGLTPL 143

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 8/89 (8%)
Query: 564 FISQGA---IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 620
            + QGA   + DA G     +P+H A R G LD++ +L++HGAD   +DS GS  IH A 
Sbjct: 60  LLKQGASPNVQDASG----TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 115
Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           + GH+ +V++L  +  +++ +D +G+T L
Sbjct: 116 REGHSSVVSFLAPES-DLHHRDASGLTPL 143

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 597 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 656
           LL +    P  ++  G T + Q   FG   +   L+ +G + N+QD +G + +  +A   
Sbjct: 27  LLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTG 85
Query: 657 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 716
           F LD  ++L+  GA     D   G++ +H AI  + H ++ + ++  S L   +A GLTP
Sbjct: 86  F-LDTLKVLVEHGADVNALDST-GSLPIHLAI-REGHSSVVSFLAPESDLHHRDASGLTP 142
Query: 717 FMLLEE 722
             L  +
Sbjct: 143 LELARQ 148

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 10  IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
           I+ A G D+ A      TPLH A   GHL+ V +L+++GAD     + G T +H AA   
Sbjct: 32  ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWAD 91
Query: 64  HTRIVAYLVAKGINVNLQDRNGMTAL 89
           H  IV  L+  G +VN QD+ G TA 
Sbjct: 92  HLEIVEVLLKHGADVNAQDKFGKTAF 117

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 570 IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 623
           I+ A G D+ A      TPLH A   GHL+ V +L+++GAD     + G T +H AA   
Sbjct: 32  ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWAD 91
Query: 624 HTRIVAYLVAKGINVNLQDRNGMTAL 649
           H  IV  L+  G +VN QD+ G TA 
Sbjct: 92  HLEIVEVLLKHGADVNAQDKFGKTAF 117

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
           TPL WA   G +  V  L+Q+GADP L+     + +  A   G+T IV  L+  G++VN 
Sbjct: 38  TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97
Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 115
            D NG T L+++ +    +   ++L+  GA  TI+
Sbjct: 98  YDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIE 131

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
           TPL WA   G +  V  L+Q+GADP L+     + +  A   G+T IV  L+  G++VN 
Sbjct: 38  TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 675
            D NG T L+++ +    +   ++L+  GA  TI+
Sbjct: 98  YDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIE 131

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
           TPL WA   G +  V  L+Q+GADP L+     + +  A   G+T IV  L+  G++VN 
Sbjct: 54  TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 113
Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 115
            D NG T L+++ +    +   ++L+  GA  TI+
Sbjct: 114 YDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIE 147

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
           TPL WA   G +  V  L+Q+GADP L+     + +  A   G+T IV  L+  G++VN 
Sbjct: 54  TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 113
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 675
            D NG T L+++ +    +   ++L+  GA  TI+
Sbjct: 114 YDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIE 147

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
           TPL WA   G +  V  L+Q+GADP L+     + +  A   G+T IV  L+  G++VN 
Sbjct: 36  TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 95
Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 115
            D NG T L+++ +    +   ++L+  GA  TI+
Sbjct: 96  YDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIE 129

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
           TPL WA   G +  V  L+Q+GADP L+     + +  A   G+T IV  L+  G++VN 
Sbjct: 36  TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 95
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 675
            D NG T L+++ +    +   ++L+  GA  TI+
Sbjct: 96  YDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIE 129

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 5/132 (3%)
Query: 548 LLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTL 607
           LL  A  N  +++++  +  GA V+    +   TPLH A +    D V LL++HGADP L
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 608 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY--KVFSLDPTRLL 665
               G+T    AA  G  +++   ++KG +VN  D  G TA M +A   KV +L   + L
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL---KFL 124
Query: 666 ITFGASTTIQDK 677
              GA+  ++ K
Sbjct: 125 YKRGANVNLRRK 136

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 96/244 (39%), Gaps = 57/244 (23%)
Query: 522 PTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQAT 581
           PTS S +   VE              LL  A  N  +++++  +  GA V+    +   T
Sbjct: 13  PTSSSGRRAAVEDNH-----------LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWT 61
Query: 582 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGS---------------------------- 613
           PLH A +    D V LL++HGADP L    G+                            
Sbjct: 62  PLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNEC 121
Query: 614 -----TCIHQAAQFGHTRIVAYLVAKGINVNL-------QDR---NGMTALMWSAYKVFS 658
                T   +AA +G  + + +L  +G NVNL       Q+R    G TALM +A K   
Sbjct: 122 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 181
Query: 659 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH--VAIT-TLVSHTSSLEIPNAQGLT 715
                LL   GA     D +  N  +H  + + +    AIT  L+ H + + +   +G T
Sbjct: 182 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 241
Query: 716 PFML 719
           P +L
Sbjct: 242 PLIL 245

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
           TPL WA+  G +++V  L++ GADP ++  E  + +  A+  G+T IV  L+ + +++N+
Sbjct: 38  TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 81  QDRNGMTALMWSAY 94
            D NG T L+++ +
Sbjct: 98  YDWNGGTPLLYAVH 111

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
           TPL WA+  G +++V  L++ GADP ++  E  + +  A+  G+T IV  L+ + +++N+
Sbjct: 38  TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 641 QDRNGMTALMWSAY 654
            D NG T L+++ +
Sbjct: 98  YDWNGGTPLLYAVH 111

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 18  LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 77
           L  +PLH A + GH  +  +L++ G           T +H AA  GH  IV  L+  G +
Sbjct: 33  LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 78  VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
           VN +D   MTAL W+       +   LLI +GA    Q K
Sbjct: 93  VNAKDMLKMTALHWATEHNHQ-EVVELLIKYGADVHTQSK 131

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 578 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 637
           L  +PLH A + GH  +  +L++ G           T +H AA  GH  IV  L+  G +
Sbjct: 33  LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 638 VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
           VN +D   MTAL W+       +   LLI +GA    Q K
Sbjct: 93  VNAKDMLKMTALHWATEHNHQ-EVVELLIKYGADVHTQSK 131

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 46/72 (63%)
Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
           TPL WA+  G +++V  L++ GADP ++  E  + +  A+  G+T IV  L+ + +++N+
Sbjct: 38  TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 81  QDRNGMTALMWS 92
            D NG T L+++
Sbjct: 98  YDWNGGTPLLYA 109

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 46/72 (63%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
           TPL WA+  G +++V  L++ GADP ++  E  + +  A+  G+T IV  L+ + +++N+
Sbjct: 38  TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 641 QDRNGMTALMWS 652
            D NG T L+++
Sbjct: 98  YDWNGGTPLLYA 109

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 7/149 (4%)
Query: 17  DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI 76
           +LQ TPLH A      +    L+  G DP L D  G+T +H A + G    V  L     
Sbjct: 40  NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT 99
Query: 77  NVNLQ------DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYA 130
             +L       + NG T L  ++   + L    LL++ GA    Q+  +G  ALH A+  
Sbjct: 100 TPHLHSILKATNYNGHTCLHLASIHGY-LGIVELLVSLGADVNAQEPCNGRTALHLAVDL 158
Query: 131 KNHVAITTLVSHTSSLEIPNAQGLTPFML 159
           +N   ++ L+   + +     QG +P+ L
Sbjct: 159 QNPDLVSLLLKCGADVNRVTYQGYSPYQL 187

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 7/149 (4%)
Query: 577 DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI 636
           +LQ TPLH A      +    L+  G DP L D  G+T +H A + G    V  L     
Sbjct: 40  NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT 99
Query: 637 NVNLQ------DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYA 690
             +L       + NG T L  ++   + L    LL++ GA    Q+  +G  ALH A+  
Sbjct: 100 TPHLHSILKATNYNGHTCLHLASIHGY-LGIVELLVSLGADVNAQEPCNGRTALHLAVDL 158
Query: 691 KNHVAITTLVSHTSSLEIPNAQGLTPFML 719
           +N   ++ L+   + +     QG +P+ L
Sbjct: 159 QNPDLVSLLLKCGADVNRVTYQGYSPYQL 187

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 7/149 (4%)
Query: 17  DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI 76
           +LQ TPLH A      +    L+  G DP L D  G+T +H A + G    V  L     
Sbjct: 43  NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT 102
Query: 77  NVNLQ------DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYA 130
             +L       + NG T L  ++   + L    LL++ GA    Q+  +G  ALH A+  
Sbjct: 103 TPHLHSILKATNYNGHTCLHLASIHGY-LGIVELLVSLGADVNAQEPCNGRTALHLAVDL 161
Query: 131 KNHVAITTLVSHTSSLEIPNAQGLTPFML 159
           +N   ++ L+   + +     QG +P+ L
Sbjct: 162 QNPDLVSLLLKCGADVNRVTYQGYSPYQL 190

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 7/149 (4%)
Query: 577 DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI 636
           +LQ TPLH A      +    L+  G DP L D  G+T +H A + G    V  L     
Sbjct: 43  NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT 102
Query: 637 NVNLQ------DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYA 690
             +L       + NG T L  ++   + L    LL++ GA    Q+  +G  ALH A+  
Sbjct: 103 TPHLHSILKATNYNGHTCLHLASIHGY-LGIVELLVSLGADVNAQEPCNGRTALHLAVDL 161
Query: 691 KNHVAITTLVSHTSSLEIPNAQGLTPFML 719
           +N   ++ L+   + +     QG +P+ L
Sbjct: 162 QNPDLVSLLLKCGADVNRVTYQGYSPYQL 190

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 14 IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA 73
          +G DL    L  A R G  D V +L+ +GAD    D  GST +H AA+ GH  +V  L+ 
Sbjct: 2  MGSDLGKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 60
Query: 74 KGINVNLQDRNGMTAL 89
           G +VN QD+ G TA 
Sbjct: 61 AGADVNAQDKFGKTAF 76

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 574 IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA 633
           +G DL    L  A R G  D V +L+ +GAD    D  GST +H AA+ GH  +V  L+ 
Sbjct: 2   MGSDLGKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 60
Query: 634 KGINVNLQDRNGMTAL 649
            G +VN QD+ G TA 
Sbjct: 61  AGADVNAQDKFGKTAF 76

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 85/196 (43%), Gaps = 26/196 (13%)
Query: 547 TLLHWAAINNRIEI--------MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLL 598
           T+LHW A N+  E          K  I+ GA V+A   D + TPL  A        V  L
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCD-ENTPLXLAVLARRRRLVAYL 185
Query: 599 IQHGADPTLMDSEGSTCIHQAA---QFGHTRIVAYLVAKGINVNLQ--DRNGMTALMWSA 653
            + GADPT+ +    + +HQAA    FG    V  L +  +  +++  DRNG TAL   A
Sbjct: 186 XKAGADPTIYNKSERSALHQAAANRDFGXX--VYXLNSTKLKGDIEELDRNGXTALXIVA 243
Query: 654 YKV--FSLDPTRLLIT-------FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT- 703
           +      +   +LL+         GA+    +K  G  ALH+A    N   +  LV    
Sbjct: 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKG 303
Query: 704 SSLEIPNAQGLTPFML 719
           S+ +  +  G TP  L
Sbjct: 304 SNKDKQDEDGKTPIXL 319

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 18/189 (9%)
Query: 513 MKRYEV--YTEPTSLSDKYQFVEAGQD----VNEPDSETVTLLHWAAINNRIEIMKYFIS 566
           MK YEV    E  +  D  +  E  QD    V+E D+E  T L+ A  NN IEI K  I 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60
Query: 567 QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTL--MDSEGSTCIHQAAQFGH 624
           +GA ++ +   +  +P  +A  QG  + +  +++H A P L   +  G   +  AA+ GH
Sbjct: 61  RGADIN-LQNSISDSPYLYAGAQGRTEILAYMLKH-ATPDLNKHNRYGGNALIPAAEKGH 118
Query: 625 TRIVAYLVAKGI-NVNLQDRNGMTALMWS-----AYKVFSLDPTRLLITFGASTTIQDKI 678
              V  L+  G  +++ Q+  G TAL+ +       +++  D  +LL+  GA  +I+D  
Sbjct: 119 IDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ-DIVKLLMENGADQSIKDN- 176
Query: 679 HGNVALHWA 687
            G  A+ +A
Sbjct: 177 SGRTAMDYA 185

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 26  ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 85
           ++ +G  D V  +I    DP+L + EG T +H A   GHT IV +LV  G+NVN  D +G
Sbjct: 44  SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 86  MTALMWSAYKVFSLDPTRLLITFGAS 111
            T L  +A    ++   + L+  GA+
Sbjct: 104 WTPLHCAA-SCNNVQVCKFLVESGAA 128

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
           ++ +G  D V  +I    DP+L + EG T +H A   GHT IV +LV  G+NVN  D +G
Sbjct: 44  SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 646 MTALMWSAYKVFSLDPTRLLITFGAS 671
            T L  +A    ++   + L+  GA+
Sbjct: 104 WTPLHCAA-SCNNVQVCKFLVESGAA 128

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 547 TLLHWAAINNRIEIMKYFISQGA---IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA 603
           TLLH A+I   I  ++Y +  G+   + D  G     TPLH A   GHL  V LL+QH A
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW----TPLHEACNHGHLKVVELLLQHKA 67
Query: 604 DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 639
                  +  + +H AA+ GH  IV  L++ G + N
Sbjct: 68  LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
           T LH A+ +G + SV  L+Q+G+DP + D  G T +H+A   GH ++V  L+     VN 
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
                 + L   A K   +D  +LL+++GAS
Sbjct: 72  TGYQNDSPLH-DAAKNGHVDIVKLLLSYGAS 101

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 26  ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 85
           ++ +G  D V  +I    DP+L + EG T +H A   GHT IV +LV  G+NVN  D +G
Sbjct: 44  SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 86  MTALMWSAYKVFSLDPTRLLITFGAS 111
            T L  +A    ++   + L+  GA+
Sbjct: 104 WTPLHCAA-SCNNVQVCKFLVESGAA 128

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
           ++ +G  D V  +I    DP+L + EG T +H A   GHT IV +LV  G+NVN  D +G
Sbjct: 44  SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 646 MTALMWSAYKVFSLDPTRLLITFGAS 671
            T L  +A    ++   + L+  GA+
Sbjct: 104 WTPLHCAA-SCNNVQVCKFLVESGAA 128

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 37/64 (57%)
Query: 26 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 85
          A R G  D V +L+ +GAD    D +G T +H AA+ GH  IV  L+  G +VN QD+ G
Sbjct: 9  AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 86 MTAL 89
           TA 
Sbjct: 69 KTAF 72

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 37/64 (57%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
           A R G  D V +L+ +GAD    D +G T +H AA+ GH  IV  L+  G +VN QD+ G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 646 MTAL 649
            TA 
Sbjct: 69  KTAF 72

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 14 IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA 73
          +G DL    L  A R G  D V +L+ +GAD    D  GST +H AA+ GH  +V  L+ 
Sbjct: 20 MGSDLGKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78
Query: 74 KGINVNLQDRNGMTAL 89
           G +V  QD+ G TA 
Sbjct: 79 AGADVXAQDKFGKTAF 94

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 574 IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA 633
           +G DL    L  A R G  D V +L+ +GAD    D  GST +H AA+ GH  +V  L+ 
Sbjct: 20  MGSDLGKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78
Query: 634 KGINVNLQDRNGMTAL 649
            G +V  QD+ G TA 
Sbjct: 79  AGADVXAQDKFGKTAF 94

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 11/166 (6%)
Query: 530 QFVEAGQDVNEPDSETV--------TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQAT 581
           +F ++  D+ +P ++ V         LL  A   N  ++M           A  G  ++T
Sbjct: 2   EFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGR-KST 60
Query: 582 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ 641
           PLH A     +  V LL+QHGAD    D  G   +H A  +GH  +   L+  G  VN  
Sbjct: 61  PLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM 120
Query: 642 DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA 687
           D    T L  +A K   ++   LL++ GA  T+ +  HG  A+  A
Sbjct: 121 DLWQFTPLHEAASK-NRVEVCSLLLSHGADPTLVN-CHGKSAVDMA 164

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 6/190 (3%)
Query: 559 EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ 618
           +++   ++QGA ++A       T LH A R    D+   L+  GAD    D+ G T +H 
Sbjct: 31  QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 90
Query: 619 AAQFGHTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
           A       +   L+  +  N+N +  +G T L+ +A ++        LIT  A     D 
Sbjct: 91  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAA-RLAIEGMVEDLITADADINAADN 149
Query: 678 IHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI 737
             G  ALHWA    N  A+  L+ H ++ +  + +  TP  L     G+    KA +D  
Sbjct: 150 -SGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAARE-GSYEASKALLDNF 207
Query: 738 T--ELKDHYN 745
              E+ DH +
Sbjct: 208 ANREITDHMD 217

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 540 EPDSETVTLLHWAAINNR-------IEIMKYFISQGAIVDAI-GGDLQATPLHWATRQGH 591
           EP SE +  LH  A+  R       +  M   ++ GA V+ + GG   ATPL  AT    
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           L +   L+Q+GA+    DS G   +H A   GHT +    + +G ++  +D  G   L
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 540 EPDSETVTLLHWAAINNR-------IEIMKYFISQGAIVDAI-GGDLQATPLHWATRQGH 591
           EP SE +  LH  A+  R       +  M   ++ GA V+ + GG   ATPL  AT    
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           L +   L+Q+GA+    DS G   +H A   GHT +    + +G ++  +D  G   L
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 540 EPDSETVTLLHWAAINNR-------IEIMKYFISQGAIVDAI-GGDLQATPLHWATRQGH 591
           EP SE +  LH  A+  R       +  M   ++ GA V+ + GG   ATPL  AT    
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247
Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           L +   L+Q+GA+    DS G   +H A   GHT +    + +G ++  +D  G   L
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 56/114 (49%)
Query: 537 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 596
           D+   + + +T LH A      E ++  + +GA +DA+      +PL  A     L  V 
Sbjct: 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 597 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
           LL+QHGA+       GS+ +H A+  G   +V  LV  G + +L++ +  T LM
Sbjct: 168 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLM 221

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 525 LSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLH 584
           L +   +V  G+DVN         LH+AA   ++EI+++ + +GA ++A       TPL 
Sbjct: 15  LDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH-HITPLL 73
Query: 585 WATRQGHLDSVVLLIQHGADPTLMDSEGSTCI 616
            A  +GH+  V LL+  GAD T+   +G T +
Sbjct: 74  SAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 585 WATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN 644
           WA + G LD V   +  G D       G   +H AA  G   I+ +L+ KG ++N  D++
Sbjct: 8   WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 67
Query: 645 GMTALMWSAYKVFSLDPTRLLITFGASTTIQ 675
            +T L+ + Y+   +   +LL++ GA  T++
Sbjct: 68  HITPLLSAVYE-GHVSCVKLLLSKGADKTVK 97

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 16  GDLQATPLHWATRQGHLDSVVLLIQHGADPTL----MDSE---GSTCIHQAAQFGHTRIV 68
           G +  T LH A    +L++ ++L++  A P L    M SE   G T +H A    +  +V
Sbjct: 34  GAMGETALHIAALYDNLEAAMVLME--AAPELVFEPMTSELYEGQTALHIAVINQNVNLV 91
Query: 69  AYLVAKGINVNLQDRN-------------GMTALMWSAYKVFSLDPTRLLITFGASTTIQ 115
             L+A+G +V+ +                G   L ++A  V S +  RLLI  GA    Q
Sbjct: 92  RALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC-VGSEEIVRLLIEHGADIRAQ 150
Query: 116 DKIHGNVALHWAIYAKNHVAITTLVS---------HTSSLE-IPNAQGLTPFML--LEEN 163
           D + GN  LH  I   N      + +         H  SLE +PN QGLTPF L  +E N
Sbjct: 151 DSL-GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN 209
Query: 164 I 164
           I
Sbjct: 210 I 210

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 576 GDLQATPLHWATRQGHLDSVVLLIQHGADPTL----MDSE---GSTCIHQAAQFGHTRIV 628
           G +  T LH A    +L++ ++L++  A P L    M SE   G T +H A    +  +V
Sbjct: 34  GAMGETALHIAALYDNLEAAMVLME--AAPELVFEPMTSELYEGQTALHIAVINQNVNLV 91
Query: 629 AYLVAKGINVNLQDRN-------------GMTALMWSAYKVFSLDPTRLLITFGASTTIQ 675
             L+A+G +V+ +                G   L ++A  V S +  RLLI  GA    Q
Sbjct: 92  RALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC-VGSEEIVRLLIEHGADIRAQ 150
Query: 676 DKIHGNVALHWAIYAKNHVAITTLVS---------HTSSLE-IPNAQGLTPFML--LEEN 723
           D + GN  LH  I   N      + +         H  SLE +PN QGLTPF L  +E N
Sbjct: 151 DSL-GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN 209
Query: 724 I 724
           I
Sbjct: 210 I 210

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 525 LSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLH 584
           L +   +V  G+DVN         LH+AA   ++EI+++ + +GA ++A       TPL 
Sbjct: 20  LDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH-HITPLL 78
Query: 585 WATRQGHLDSVVLLIQHGADPTLMDSEGST 614
            A  +GH+  V LL+  GAD T+   +G T
Sbjct: 79  SAVYEGHVSCVKLLLSKGADKTVKGPDGLT 108

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 585 WATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN 644
           WA + G LD V   +  G D       G   +H AA  G   I+ +L+ KG ++N  D++
Sbjct: 13  WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 645 GMTALMWSAYKVFSLDPTRLLITFGASTTIQ 675
            +T L+ + Y+   +   +LL++ GA  T++
Sbjct: 73  HITPLLSAVYE-GHVSCVKLLLSKGADKTVK 102

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 23  LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 81
           +H A R G LD++  L+++ AD  + D+EG+  +H AA+ GH R+V +LV     NV  +
Sbjct: 74  IHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 82  DRNGMTA 88
           +  G TA
Sbjct: 134 NHKGDTA 140

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 583 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 641
           +H A R G LD++  L+++ AD  + D+EG+  +H AA+ GH R+V +LV     NV  +
Sbjct: 74  IHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 642 DRNGMTA 648
           +  G TA
Sbjct: 134 NHKGDTA 140

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 23  LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 81
           +H A R G LD++  L++  AD  + D+EG+  +H AA+ GH R+V +LV     NV  +
Sbjct: 74  IHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 82  DRNGMTA 88
           +  G TA
Sbjct: 134 NHKGDTA 140

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 583 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 641
           +H A R G LD++  L++  AD  + D+EG+  +H AA+ GH R+V +LV     NV  +
Sbjct: 74  IHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 642 DRNGMTA 648
           +  G TA
Sbjct: 134 NHKGDTA 140

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
           A  +G L+ +  L+Q+  +    +  G T + Q  + G+  I   L+ +G N +L+DR G
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
             A++  A +   LD  + L+ F A   I+D   GN+ LH A    +   +  LV HT+S
Sbjct: 71  F-AVIHDAARAGQLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 23  LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 81
           +H A R G LD++  L++  AD  + D+EG+  +H AA+ GH R+V +LV     NV  +
Sbjct: 74  IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 82  DRNGMTA 88
           +  G TA
Sbjct: 134 NHKGDTA 140

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 583 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 641
           +H A R G LD++  L++  AD  + D+EG+  +H AA+ GH R+V +LV     NV  +
Sbjct: 74  IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 642 DRNGMTA 648
           +  G TA
Sbjct: 134 NHKGDTA 140

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
           A  +G L+ +  L+Q+  +    +  G T + Q  + G+  I   L+ +G N +L+DR G
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
             A++  A +   LD  + L+ F A   I+D   GN+ LH A    +   +  LV HT+S
Sbjct: 71  F-AVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 23  LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 81
           +H A R G LD++  L++  AD  + D+EG+  +H AA+ GH R+V +LV     NV  +
Sbjct: 74  IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 82  DRNGMTA 88
           +  G TA
Sbjct: 134 NHKGDTA 140

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 583 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 641
           +H A R G LD++  L++  AD  + D+EG+  +H AA+ GH R+V +LV     NV  +
Sbjct: 74  IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 642 DRNGMTA 648
           +  G TA
Sbjct: 134 NHKGDTA 140

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
           A  +G L+ +  L+Q+  +    +  G T + Q  + G+  I   L+ +G N +L+DR G
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
             A++  A +   LD  + L+ F A   I+D   GN+ LH A    +   +  LV HT+S
Sbjct: 71  -NAVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 23  LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 81
           +H A R G LD++  L++  AD  + D+EG+  +H AA+ GH R+V +LV     NV  +
Sbjct: 74  IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 82  DRNGMTA 88
           +  G TA
Sbjct: 134 NHKGDTA 140

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 583 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 641
           +H A R G LD++  L++  AD  + D+EG+  +H AA+ GH R+V +LV     NV  +
Sbjct: 74  IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 642 DRNGMTA 648
           +  G TA
Sbjct: 134 NHKGDTA 140

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
           A  +G L+ +  L+Q+  +    +  G T + Q  + G+  I   L+ +G N +L+DR G
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
             A++  A +   LD  + L+ F A   I+D   GN+ LH A    +   +  LV HT+S
Sbjct: 71  F-AVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 11  VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAY 70
           ++A       T L  A   G +D V  L+   AD  + D +GST +  A + GH  I   
Sbjct: 175 INAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGL 234
Query: 71  LVA-KGINVNLQDRNGMTALM 90
           L+A    +++L DR+G TALM
Sbjct: 235 LLAVPSCDISLTDRDGSTALM 255

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 571 VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAY 630
           ++A       T L  A   G +D V  L+   AD  + D +GST +  A + GH  I   
Sbjct: 175 INAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGL 234
Query: 631 LVA-KGINVNLQDRNGMTALM 650
           L+A    +++L DR+G TALM
Sbjct: 235 LLAVPSCDISLTDRDGSTALM 255

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 22  PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNL 80
           PLH A ++G+L  +   + +      +D  GST ++ A   GH  IV  L  +  I +N 
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 116
           Q++ G TAL  +A+K ++ D  +LL+  GA T +++
Sbjct: 136 QNKLGDTALHAAAWKGYA-DIVQLLLAKGARTDLRN 170

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 582 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNL 640
           PLH A ++G+L  +   + +      +D  GST ++ A   GH  IV  L  +  I +N 
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 676
           Q++ G TAL  +A+K ++ D  +LL+  GA T +++
Sbjct: 136 QNKLGDTALHAAAWKGYA-DIVQLLLAKGARTDLRN 170

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 34/197 (17%)
Query: 511 DWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI 570
           DW   +E       LS +   +  G  VN   ++ V+ LH A +   +  +K  +  GA 
Sbjct: 3   DWSPMHEAAIHGHQLSLR-NLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 571 VDAIGGD--------------------LQ-----------ATPLHWATRQGHLDSVVLLI 599
           V+ +  D                    LQ           A+P+H A R+GH++ V  LI
Sbjct: 62  VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLI 121
Query: 600 QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSL 659
            +G +     S   T ++ A +      V  L+  G +VN     G  + + +  +  S 
Sbjct: 122 AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVARTASE 179
Query: 660 DPTRLLITFGASTTIQD 676
           +   LL+ FGA T  ++
Sbjct: 180 ELACLLMDFGADTQAKN 196

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 34/197 (17%)
Query: 511 DWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI 570
           DW   +E       LS +   +  G  VN   ++ V+ LH A +   +  +K  +  GA 
Sbjct: 59  DWSPMHEAAIHGHQLSLR-NLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 117
Query: 571 VDAIGGD--------------------LQ-----------ATPLHWATRQGHLDSVVLLI 599
           V+ +  D                    LQ           A+P+H A R+GH++ V  LI
Sbjct: 118 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLI 177
Query: 600 QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSL 659
            +G +     S   T ++ A +      V  L+  G +VN     G  + + +  +  S 
Sbjct: 178 AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVVRTASE 235
Query: 660 DPTRLLITFGASTTIQD 676
           +   LL+ FGA T  ++
Sbjct: 236 ELACLLMDFGADTQAKN 252

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	923
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-72
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-57
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-42
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-42
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-36
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-34
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-34
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-33
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-32
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-29
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-25
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-20
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-48
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-48
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-47
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-47
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-46
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-40
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-36
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-36
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-36
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-36
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-36
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-34
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-48
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-45
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-44
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-38
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-34
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-33
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-31
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-31
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-29
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-27
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-45
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-40
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-37
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-35
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-32
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-44
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-41
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-38
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-37
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-33
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-30
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-29
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-27
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-27
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-24
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-19
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-44
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-41
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-33
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-30
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-27
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-20
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-19
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-44
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-44
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-39
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-39
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-33
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-32
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-32
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-31
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-30
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-26
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-44
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-40
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-36
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-34
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-22
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-43
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-43
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-39
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-34
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-32
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-32
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-30
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-28
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-25
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-43
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-41
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-40
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-38
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-32
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-32
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-30
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-28
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-27
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-17
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-43
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-40
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-35
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-33
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-32
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-28
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-21
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-16
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-43
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-40
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-32
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-29
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-22
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-42
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-42
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-36
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-32
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-26
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-22
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-17
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-17
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-11
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-42
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-38
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-34
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-29
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-27
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-25
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-42
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-35
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-35
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-33
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-33
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-32
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-28
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-28
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-26
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-21
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-42
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-41
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-36
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-34
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-31
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-28
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-26
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-23
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-17
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-42
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-37
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-33
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-32
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-30
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-23
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-42
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-37
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-34
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-31
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-31
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-26
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-42
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-38
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-37
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-31
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-28
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-27
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-26
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-24
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-16
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-41
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-38
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-37
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-34
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-32
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-30
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-28
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-28
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-41
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-39
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-33
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-30
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-30
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-22
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-19
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-41
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-40
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-35
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-35
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-34
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-30
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-29
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-24
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-24
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-23
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-40
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-34
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-32
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-28
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-28
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-26
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-17
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-17
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-40
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-36
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-32
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-31
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-30
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-29
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-27
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-27
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-27
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-26
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-09
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-40
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-35
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-32
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-30
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-40
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-38
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-31
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-28
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-28
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-26
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-40
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-31
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-31
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-30
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-28
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-20
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-39
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-30
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-30
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-29
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-24
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-22
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-22
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-39
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-39
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-32
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-31
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-27
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-39
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-38
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-37
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-35
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-30
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-28
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-27
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-27
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-27
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-24
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-39
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-36
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-34
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-34
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-20
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-14
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-11
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-38
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-36
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-32
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-31
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-30
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-30
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-27
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-21
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-05
2rfa_A	232	Transient receptor potential cation channel subfa	4e-38
2rfa_A	232	Transient receptor potential cation channel subfa	1e-36
2rfa_A	232	Transient receptor potential cation channel subfa	3e-30
2rfa_A	232	Transient receptor potential cation channel subfa	6e-30
2rfa_A	232	Transient receptor potential cation channel subfa	7e-28
2rfa_A	232	Transient receptor potential cation channel subfa	2e-24
2rfa_A	232	Transient receptor potential cation channel subfa	2e-24
2rfa_A	232	Transient receptor potential cation channel subfa	6e-21
2rfa_A	232	Transient receptor potential cation channel subfa	2e-14
2rfa_A	232	Transient receptor potential cation channel subfa	2e-12
2rfa_A	232	Transient receptor potential cation channel subfa	2e-12
2rfa_A	232	Transient receptor potential cation channel subfa	3e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-37
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-36
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-30
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-29
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-29
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-25
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-37
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-37
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-37
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-32
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-30
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-28
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-28
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-26
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-24
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-24
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-20
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-37
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-35
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-31
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-31
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-25
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-18
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-18
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-37
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-31
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-30
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-29
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-17
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-17
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-36
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-31
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-31
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-28
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-28
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-20
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-20
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-36
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-31
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-31
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-28
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-27
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-19
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-19
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-35
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-29
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-26
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-15
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-33
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-28
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-28
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-27
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-20
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-32
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-28
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-28
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-25
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-22
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-12
2pnn_A	273	Transient receptor potential cation channel subfa	2e-30
2pnn_A	273	Transient receptor potential cation channel subfa	3e-30
2pnn_A	273	Transient receptor potential cation channel subfa	4e-25
2pnn_A	273	Transient receptor potential cation channel subfa	2e-21
2pnn_A	273	Transient receptor potential cation channel subfa	1e-16
2pnn_A	273	Transient receptor potential cation channel subfa	7e-09
2pnn_A	273	Transient receptor potential cation channel subfa	2e-08
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-30
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-26
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-25
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-24
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-17
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-14
2etb_A	256	Transient receptor potential cation channel subfam	7e-30
2etb_A	256	Transient receptor potential cation channel subfam	2e-27
2etb_A	256	Transient receptor potential cation channel subfam	3e-23
2etb_A	256	Transient receptor potential cation channel subfam	2e-21
2etb_A	256	Transient receptor potential cation channel subfam	4e-19
2etb_A	256	Transient receptor potential cation channel subfam	3e-14
2etb_A	256	Transient receptor potential cation channel subfam	2e-11
2etb_A	256	Transient receptor potential cation channel subfam	2e-11
2etb_A	256	Transient receptor potential cation channel subfam	9e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-27
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-26
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-26
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-20
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-19
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-27
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-26
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-23
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-22
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-19
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-17
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-26
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-24
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-23
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-23
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-20
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-19
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-19
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-15
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-14
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-12
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-08
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	8e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-11
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  238 bits (609), Expect = 1e-72
 Identities = 110/190 (57%), Positives = 144/190 (75%), Gaps = 2/190 (1%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            VEAG DV +PD E VTLLHWAAINNRI+++KY+IS+GAIVD +GGDL +TPLHWATRQG
Sbjct: 28  LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG 87

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
           HL  VV L+++GADP+L+D EG +CIH AAQFGHT IVAYL+AKG +V++ D+NGMT LM
Sbjct: 88  HLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLM 147

Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIP 709
           W+AY+  S+DPTRLL+TF  S  + DK H N ALHWA+    +  +   L+   ++++  
Sbjct: 148 WAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVL-AGNTTVISLLLEAGANVDAQ 206

Query: 710 NAQGLTPFML 719
           N +G +   L
Sbjct: 207 NIKGESALDL 216

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  196 bits (502), Expect = 1e-57
 Identities = 88/159 (55%), Positives = 118/159 (74%), Gaps = 2/159 (1%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           KY+IS+GAIVD +GGDL +TPLHWATRQGHL  VV L+++GADP+L+D EG +CIH AAQ
Sbjct: 59  KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
           FGHT IVAYL+AKG +V++ D+NGMT LMW+AY+  S+DPTRLL+TF  S  + DK H N
Sbjct: 119 FGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN 178

Query: 122 VALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
            ALHWA+    +  +   L+   ++++  N +G +   L
Sbjct: 179 TALHWAVL-AGNTTVISLLLEAGANVDAQNIKGESALDL 216

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  154 bits (391), Expect = 2e-42
 Identities = 42/182 (23%), Positives = 68/182 (37%), Gaps = 6/182 (3%)

Query: 538 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL 597
           +   D  +   +  A      E  +  +  G  V     +   T LHWA     +D V  
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDLVKY 60

Query: 598 LIQHGADPTLMDSE-GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 656
            I  GA    +  +  ST +H A + GH  +V  L+  G + +L D  G + +  +A   
Sbjct: 61  YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF- 119

Query: 657 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIP-NAQGL 714
                   LI  G    + D+ +G   L WA Y  + V  T  L++   S+ +       
Sbjct: 120 GHTSIVAYLIAKGQDVDMMDQ-NGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN 178

Query: 715 TP 716
           T 
Sbjct: 179 TA 180

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  153 bits (390), Expect = 2e-42
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 8/175 (4%)

Query: 532 VEAGQDVNEPDSET-VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
           +  G  V++   +   T LHWA     + ++   +  GA    I G+   + +H A + G
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGE-GCSCIHLAAQFG 120

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR-IVAYLVAKGINVNLQDR-NGMTA 648
           H   V  LI  G D  +MD  G T +  AA   H+      L+   ++VNL D+ +  TA
Sbjct: 121 HTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTA 180

Query: 649 LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
           L W+     +     LL+  GA+   Q+   G  AL  A   + +V +   L   
Sbjct: 181 LHWAVLAG-NTTVISLLLEAGANVDAQNI-KGESALDLAKQ-RKNVWMINHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  135 bits (342), Expect = 7e-36
 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 4/141 (2%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           ++ G D +  D E  + +H AA      I+ Y I++G  VD +  +   TPL WA  + H
Sbjct: 96  MKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGM-TPLMWAAYRTH 154

Query: 592 LDSVV-LLIQHGADPTLMD-SEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
                 LL+       L D    +T +H A   G+T +++ L+  G NV+ Q+  G +AL
Sbjct: 155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL 214

Query: 650 MWSAYKVFSLDPTRLLITFGA 670
             +  +  ++     L     
Sbjct: 215 DLAKQRK-NVWMINHLQEARQ 234

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  129 bits (326), Expect = 9e-34
 Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 5/141 (3%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
             +  AT+ G  +    L++ G D    D E  T +H AA      +V Y ++KG  V+ 
Sbjct: 11  WDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 70

Query: 81  QDRN-GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT- 138
              +   T L W+  +   L     L+ +GA  ++ D   G   +H A     H +I   
Sbjct: 71  LGGDLNSTPLHWATRQG-HLSMVVQLMKYGADPSLIDG-EGCSCIHLAAQ-FGHTSIVAY 127

Query: 139 LVSHTSSLEIPNAQGLTPFML 159
           L++    +++ +  G+TP M 
Sbjct: 128 LIAKGQDVDMMDQNGMTPLMW 148

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  129 bits (326), Expect = 9e-34
 Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 5/141 (3%)

Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
             +  AT+ G  +    L++ G D    D E  T +H AA      +V Y ++KG  V+ 
Sbjct: 11  WDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 70

Query: 641 QDRN-GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT- 698
              +   T L W+  +   L     L+ +GA  ++ D   G   +H A     H +I   
Sbjct: 71  LGGDLNSTPLHWATRQG-HLSMVVQLMKYGADPSLIDG-EGCSCIHLAAQ-FGHTSIVAY 127

Query: 699 LVSHTSSLEIPNAQGLTPFML 719
           L++    +++ +  G+TP M 
Sbjct: 128 LIAKGQDVDMMDQNGMTPLMW 148

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  126 bits (319), Expect = 7e-33
 Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 6/158 (3%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE-GSTCIHQAA 60
           +  +  G  V     +   T LHWA     +D V   I  GA    +  +  ST +H A 
Sbjct: 26  RELVEAGYDVRQPDKENV-TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWAT 84

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
           + GH  +V  L+  G + +L D  G + +  +A           LI  G    + D+ +G
Sbjct: 85  RQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF-GHTSIVAYLIAKGQDVDMMDQ-NG 142

Query: 121 NVALHWAIYAKNHVAIT-TLVSHTSSLEIP-NAQGLTP 156
              L WA Y  + V  T  L++   S+ +       T 
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTA 180

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  124 bits (314), Expect = 4e-32
 Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 7/144 (4%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
              +  GA    I G+   + +H A + GH   V  LI  G D  +MD  G T +  AA 
Sbjct: 93  VQLMKYGADPSLIDGE-GCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY 151

Query: 62  FGHTR-IVAYLVAKGINVNLQDR-NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 119
             H+      L+   ++VNL D+ +  TAL W+     +     LL+  GA+   Q+   
Sbjct: 152 RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG-NTTVISLLLEAGANVDAQNI-K 209

Query: 120 GNVALHWAIYAKNHVAIT-TLVSH 142
           G  AL  A   + +V +   L   
Sbjct: 210 GESALDLAKQ-RKNVWMINHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  117 bits (296), Expect = 1e-29
 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAIN-NRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
           +  GQDV+  D   +T L WAA   + ++  +  ++    V+      + T LHWA   G
Sbjct: 129 IAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG 188

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 639
           +   + LL++ GA+    + +G + +  A Q  +  ++ +L        
Sbjct: 189 NTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  104 bits (261), Expect = 5e-25
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 4/112 (3%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV-LLIQHGADPTLMD-SEGSTCIHQ 58
           + Y I++G  VD +  +   TPL WA  + H      LL+       L D    +T +H 
Sbjct: 125 VAYLIAKGQDVDMMDQNGM-TPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHW 183

Query: 59  AAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
           A   G+T +++ L+  G NV+ Q+  G +AL  +  +  ++     L     
Sbjct: 184 AVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRK-NVWMINHLQEARQ 234

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 96.3 bits (241), Expect = 2e-22
 Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 3/113 (2%)

Query: 48  MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 107
           +D   +  I +A Q+G       LV  G +V   D+  +T L W+A     +D  +  I+
Sbjct: 5   IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN-NRIDLVKYYIS 63

Query: 108 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
            GA          +  LHWA   + H+++   L+ + +   + + +G +   L
Sbjct: 64  KGAIVDQLGGDLNSTPLHWATR-QGHLSMVVQLMKYGADPSLIDGEGCSCIHL 115

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 96.3 bits (241), Expect = 2e-22
 Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 3/113 (2%)

Query: 608 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 667
           +D   +  I +A Q+G       LV  G +V   D+  +T L W+A     +D  +  I+
Sbjct: 5   IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN-NRIDLVKYYIS 63

Query: 668 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
            GA          +  LHWA   + H+++   L+ + +   + + +G +   L
Sbjct: 64  KGAIVDQLGGDLNSTPLHWATR-QGHLSMVVQLMKYGADPSLIDGEGCSCIHL 115

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 89.4 bits (223), Expect = 4e-20
 Identities = 15/78 (19%), Positives = 33/78 (42%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           +  ++    V+      + T LHWA   G+   + LL++ GA+    + +G + +  A Q
Sbjct: 160 RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQ 219

Query: 62  FGHTRIVAYLVAKGINVN 79
             +  ++ +L        
Sbjct: 220 RKNVWMINHLQEARQAKG 237

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 51.7 bits (125), Expect = 3e-07
 Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 4/67 (5%)

Query: 77  NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 136
           ++   D      ++ +       +  R L+  G      DK      LHWA    N + +
Sbjct: 1   HMTHIDDYSTWDIVKATQY-GIYERCRELVEAGYDVRQPDK-ENVTLLHWAAI-NNRIDL 57

Query: 137 T-TLVSH 142
               +S 
Sbjct: 58  VKYYISK 64

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 51.7 bits (125), Expect = 3e-07
 Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 4/67 (5%)

Query: 637 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 696
           ++   D      ++ +       +  R L+  G      DK      LHWA    N + +
Sbjct: 1   HMTHIDDYSTWDIVKATQY-GIYERCRELVEAGYDVRQPDK-ENVTLLHWAAI-NNRIDL 57

Query: 697 T-TLVSH 702
               +S 
Sbjct: 58  VKYYISK 64

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 47.0 bits (113), Expect = 9e-06
 Identities = 6/42 (14%), Positives = 16/42 (38%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA 573
           +EAG +V+  + +  + L  A     + ++ +          
Sbjct: 197 LEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  178 bits (454), Expect = 1e-48
 Identities = 59/190 (31%), Positives = 87/190 (45%), Gaps = 5/190 (2%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            ++ G   N  + +  T LH AA     E+ KY +   A V+A   D Q TPLH A R G
Sbjct: 33  LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIG 91

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
           H + V LL+++ A+P L  + G T +H AA+ GH   V  L+ K  +     + G T L 
Sbjct: 92  HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLH 151

Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSHTSSLEIP 709
            +A     +    LL+   A      K +G   LH A++  N++ I   L+    S   P
Sbjct: 152 VAAKY-GKVRVAELLLERDAHPNAAGK-NGLTPLHVAVH-HNNLDIVKLLLPRGGSPHSP 208

Query: 710 NAQGLTPFML 719
              G TP  +
Sbjct: 209 AWNGYTPLHI 218

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  178 bits (453), Expect = 1e-48
 Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 5/186 (2%)

Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
           G          +T LH A+    + I+K  + +GA  +     ++ TPLH A R GH + 
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEV 62

Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 654
              L+Q+ A       +  T +H AA+ GHT +V  L+    N NL    G T L  +A 
Sbjct: 63  AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 122

Query: 655 KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQG 713
           +   ++    L+   AS     K  G   LH A      V +   L+   +        G
Sbjct: 123 EG-HVETVLALLEKEASQACMTK-KGFTPLHVAAK-YGKVRVAELLLERDAHPNAAGKNG 179

Query: 714 LTPFML 719
           LTP  +
Sbjct: 180 LTPLHV 185

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  173 bits (442), Expect = 4e-47
 Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 5/189 (2%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           +E   + N   +   T LH AA    +E +   + + A    +      TPLH A + G 
Sbjct: 100 LENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK-GFTPLHVAAKYGK 158

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
           +    LL++  A P      G T +H A    +  IV  L+ +G + +    NG T L  
Sbjct: 159 VRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI 218

Query: 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 710
           +A +   ++  R L+ +G S   +    G   LH A   + H  +   L+S  ++  + N
Sbjct: 219 AAKQN-QVEVARSLLQYGGSANAESV-QGVTPLHLAAQ-EGHAEMVALLLSKQANGNLGN 275

Query: 711 AQGLTPFML 719
             GLTP  L
Sbjct: 276 KSGLTPLHL 284

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  173 bits (440), Expect = 7e-47
 Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 5/189 (2%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           +E     N      +T LH A  +N ++I+K  + +G    +   +   TPLH A +Q  
Sbjct: 166 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN-GYTPLHIAAKQNQ 224

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
           ++    L+Q+G        +G T +H AAQ GH  +VA L++K  N NL +++G+T L  
Sbjct: 225 VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHL 284

Query: 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 710
            A +   +    +LI  G       +  G   LH A +   ++ +   L+ H + +    
Sbjct: 285 VAQEG-HVPVADVLIKHGVMVDATTR-MGYTPLHVASH-YGNIKLVKFLLQHQADVNAKT 341

Query: 711 AQGLTPFML 719
             G +P   
Sbjct: 342 KLGYSPLHQ 350

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  171 bits (436), Expect = 2e-46
 Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 5/189 (2%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           +  G   + P     T LH AA  N++E+ +  +  G   +A       TPLH A ++GH
Sbjct: 199 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ-GVTPLHLAAQEGH 257

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
            + V LL+   A+  L +  G T +H  AQ GH  +   L+  G+ V+   R G T L  
Sbjct: 258 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV 317

Query: 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 710
           +++   ++   + L+   A    + K  G   LH A   + H  I   L+ + +S    +
Sbjct: 318 ASHY-GNIKLVKFLLQHQADVNAKTK-LGYSPLHQAAQ-QGHTDIVTLLLKNGASPNEVS 374

Query: 711 AQGLTPFML 719
           + G TP  +
Sbjct: 375 SDGTTPLAI 383

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  153 bits (389), Expect = 4e-40
 Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 6/157 (3%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           +    + N  +   +T LH  A    + +    I  G +VDA       TPLH A+  G+
Sbjct: 265 LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY-TPLHVASHYGN 323

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
           +  V  L+QH AD       G + +HQAAQ GHT IV  L+  G + N    +G T L  
Sbjct: 324 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI 383

Query: 652 SAYKVFSLDPTRLLITF---GASTTIQDKIHGNVALH 685
           +      +  T +L       +   + DK H      
Sbjct: 384 AKRL-GYISVTDVLKVVTDETSFVLVSDK-HRMSFPE 418

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  147 bits (374), Expect = 3e-38
 Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 5/160 (3%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
            KY +   A V+A   D Q TPLH A R GH + V LL+++ A+P L  + G T +H AA
Sbjct: 63  AKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAA 121

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
           + GH   V  L+ K  +     + G T L  +A     +    LL+   A      K +G
Sbjct: 122 REGHVETVLALLEKEASQACMTKKGFTPLHVAAKY-GKVRVAELLLERDAHPNAAGK-NG 179

Query: 121 NVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTPFML 159
              LH A++  N++ I   L+    S   P   G TP  +
Sbjct: 180 LTPLHVAVH-HNNLDIVKLLLPRGGSPHSPAWNGYTPLHI 218

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  146 bits (372), Expect = 6e-38
 Identities = 44/160 (27%), Positives = 67/160 (41%), Gaps = 5/160 (3%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +K  + +GA  +     ++ TPLH A R GH +    L+Q+ A       +  T +H AA
Sbjct: 30  VKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAA 88

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
           + GHT +V  L+    N NL    G T L  +A +   ++    L+   AS     K  G
Sbjct: 89  RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREG-HVETVLALLEKEASQACMTK-KG 146

Query: 121 NVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
              LH A      V +   L+   +        GLTP  +
Sbjct: 147 FTPLHVAAK-YGKVRVAELLLERDAHPNAAGKNGLTPLHV 185

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  143 bits (362), Expect = 1e-36
 Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 5/160 (3%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +   + + A    +      TPLH A + G +    LL++  A P      G T +H A 
Sbjct: 129 VLALLEKEASQACMTKK-GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAV 187

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
              +  IV  L+ +G + +    NG T L  +A +   ++  R L+ +G S   +    G
Sbjct: 188 HHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN-QVEVARSLLQYGGSANAESV-QG 245

Query: 121 NVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
              LH A   + H  +   L+S  ++  + N  GLTP  L
Sbjct: 246 VTPLHLAAQ-EGHAEMVALLLSKQANGNLGNKSGLTPLHL 284

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  141 bits (359), Expect = 3e-36
 Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 5/159 (3%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           K  + +G    +   +   TPLH A +Q  ++    L+Q+G        +G T +H AAQ
Sbjct: 196 KLLLPRGGSPHSPAWN-GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQ 254

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
            GH  +VA L++K  N NL +++G+T L   A +   +    +LI  G       +  G 
Sbjct: 255 EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEG-HVPVADVLIKHGVMVDATTR-MGY 312

Query: 122 VALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
             LH A +   ++ +   L+ H + +      G +P   
Sbjct: 313 TPLHVASH-YGNIKLVKFLLQHQADVNAKTKLGYSPLHQ 350

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  141 bits (357), Expect = 5e-36
 Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 6   SQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHT 65
           S G      G     TPLH A+  GHL  V  L+Q GA P + + +  T +H AA+ GHT
Sbjct: 2   SPGISGGGGGES-GLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT 60

Query: 66  RIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALH 125
            +  YL+     VN + ++  T L  +A      +  +LL+   A+  +     G+  LH
Sbjct: 61  EVAKYLLQNKAKVNAKAKDDQTPLHCAARIG-HTNMVKLLLENNANPNLATT-AGHTPLH 118

Query: 126 WAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
            A   + HV     L+   +S      +G TP  +
Sbjct: 119 IAAR-EGHVETVLALLEKEASQACMTKKGFTPLHV 152

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  141 bits (357), Expect = 5e-36
 Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 566 SQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHT 625
           S G      G     TPLH A+  GHL  V  L+Q GA P + + +  T +H AA+ GHT
Sbjct: 2   SPGISGGGGGES-GLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT 60

Query: 626 RIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALH 685
            +  YL+     VN + ++  T L  +A      +  +LL+   A+  +     G+  LH
Sbjct: 61  EVAKYLLQNKAKVNAKAKDDQTPLHCAARIG-HTNMVKLLLENNANPNLATT-AGHTPLH 118

Query: 686 WAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
            A   + HV     L+   +S      +G TP  +
Sbjct: 119 IAAR-EGHVETVLALLEKEASQACMTKKGFTPLHV 152

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  140 bits (355), Expect = 9e-36
 Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 5/160 (3%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
            +  +  G   +A       TPLH A ++GH + V LL+   A+  L +  G T +H  A
Sbjct: 228 ARSLLQYGGSANAESVQ-GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVA 286

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
           Q GH  +   L+  G+ V+   R G T L  +++   ++   + L+   A    + K  G
Sbjct: 287 QEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY-GNIKLVKFLLQHQADVNAKTK-LG 344

Query: 121 NVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
              LH A   + H  I   L+ + +S    ++ G TP  +
Sbjct: 345 YSPLHQAAQ-QGHTDIVTLLLKNGASPNEVSSDGTTPLAI 383

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  134 bits (340), Expect = 9e-34
 Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 8/159 (5%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
              +S+ A  +        TPLH   ++GH+    +LI+HG         G T +H A+ 
Sbjct: 262 ALLLSKQANGNLGNKS-GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASH 320

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
           +G+ ++V +L+    +VN + + G + L  +A +    D   LL+  GAS        G 
Sbjct: 321 YGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG-HTDIVTLLLKNGASPNEVSS-DGT 378

Query: 122 VALHWAIYAKNHVAIT----TLVSHTSSLEIPNAQGLTP 156
             L  A     ++++T     +   TS + + +   ++ 
Sbjct: 379 TPLAIAKR-LGYISVTDVLKVVTDETSFVLVSDKHRMSF 416

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  121 bits (306), Expect = 2e-29
 Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
               I  G +VDA       TPLH A+  G++  V  L+QH AD       G + +HQAA
Sbjct: 294 ADVLIKHGVMVDATTRMGY-TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAA 352

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF---GASTTIQDK 117
           Q GHT IV  L+  G + N    +G T L  +      +  T +L       +   + DK
Sbjct: 353 QQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL-GYISVTDVLKVVTDETSFVLVSDK 411

Query: 118 IHGNVALH 125
            H      
Sbjct: 412 -HRMSFPE 418

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 66.7 bits (164), Expect = 1e-11
 Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 28/101 (27%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           ++   DVN       + LH AA     +I+   +  GA  + +  D   TPL  A R G+
Sbjct: 331 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGT-TPLAIAKRLGY 389

Query: 592 ---------------------------LDSVVLLIQHGADP 605
                                       ++V  ++    D 
Sbjct: 390 ISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEILDVSEDE 430

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  170 bits (434), Expect = 3e-48
 Identities = 60/182 (32%), Positives = 92/182 (50%), Gaps = 6/182 (3%)

Query: 537 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 596
           +         + LH AA    ++I    +  GA +D    D + TPL  A    HL++V 
Sbjct: 3   NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQR-TPLMEAAENNHLEAVK 61

Query: 597 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYK 655
            LI+ GA     D+EGSTC+H AA+ GH  +V YL++ G ++VN QD  G T ++W+   
Sbjct: 62  YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121

Query: 656 VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGL 714
              +D  +LL++ G+   I+D    N+ LHWA +    V I   L++    L   N  G 
Sbjct: 122 K-HVDLVKLLLSKGSDINIRDN-EENICLHWAAF-SGCVDIAEILLAAKCDLHAVNIHGD 178

Query: 715 TP 716
           +P
Sbjct: 179 SP 180

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  161 bits (410), Expect = 5e-45
 Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 6/191 (3%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            V+AG +++    +  T L  AA NN +E +KY I  GA+VD    +   T LH A ++G
Sbjct: 30  LVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGS-TCLHLAAKKG 88

Query: 591 HLDSVVLLIQHGA-DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           H + V  L+ +G  D    D  G T +  A ++ H  +V  L++KG ++N++D      L
Sbjct: 89  HYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICL 148

Query: 650 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSHTSSLEI 708
            W+A+    +D   +L+         +  HG+  LH A   +N        +S  S + +
Sbjct: 149 HWAAFS-GCVDIAEILLAAKCDLHAVNI-HGDSPLHIAAR-ENRYDCVVLFLSRDSDVTL 205

Query: 709 PNAQGLTPFML 719
            N +G TP   
Sbjct: 206 KNKEGETPLQC 216

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  159 bits (404), Expect = 3e-44
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI-VDAIGGDLQATPLHWATRQG 590
           ++AG  V+  D+E  T LH AA     E+++Y +S G + V+        TP+ WAT   
Sbjct: 64  IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG-GWTPMIWATEYK 122

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
           H+D V LL+  G+D  + D+E + C+H AA  G   I   L+A   +++  + +G + L 
Sbjct: 123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLH 182

Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 702
            +A +    D   L ++  +  T+++K  G   L  A    + V     +   
Sbjct: 183 IAARE-NRYDCVVLFLSRDSDVTLKNK-EGETPLQCASL-NSQVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  141 bits (357), Expect = 5e-38
 Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 6/157 (3%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
              +  GA +D    D + TPL  A    HL++V  LI+ GA     D+EGSTC+H AA+
Sbjct: 28  HMLVQAGANIDTCSEDQR-TPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAK 86

Query: 62  FGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
            GH  +V YL++ G ++VN QD  G T ++W+      +D  +LL++ G+   I+D    
Sbjct: 87  KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK-HVDLVKLLLSKGSDINIRDN-EE 144

Query: 121 NVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
           N+ LHWA +    V I   L++    L   N  G +P
Sbjct: 145 NICLHWAAF-SGCVDIAEILLAAKCDLHAVNIHGDSP 180

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  130 bits (329), Expect = 3e-34
 Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 6/160 (3%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA-DPTLMDSEGSTCIHQAA 60
           KY I  GA+VD    +   T LH A ++GH + V  L+ +G  D    D  G T +  A 
Sbjct: 61  KYLIKAGALVDPKDAEGS-TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
           ++ H  +V  L++KG ++N++D      L W+A+    +D   +L+         +  HG
Sbjct: 120 EYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFS-GCVDIAEILLAAKCDLHAVNI-HG 177

Query: 121 NVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTPFML 159
           +  LH A   +N        +S  S + + N +G TP   
Sbjct: 178 DSPLHIAAR-ENRYDCVVLFLSRDSDVTLKNKEGETPLQC 216

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  128 bits (325), Expect = 1e-33
 Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 6/143 (4%)

Query: 2   KYFISQGAI-VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +Y +S G + V+        TP+ WAT   H+D V LL+  G+D  + D+E + C+H AA
Sbjct: 94  QYLLSNGQMDVNCQDDG-GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAA 152

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
             G   I   L+A   +++  + +G + L  +A +    D   L ++  +  T+++K  G
Sbjct: 153 FSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARE-NRYDCVVLFLSRDSDVTLKNK-EG 210

Query: 121 NVALHWAIYAKNHVAITT-LVSH 142
              L  A    + V     +   
Sbjct: 211 ETPLQCASL-NSQVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  122 bits (309), Expect = 1e-31
 Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 5/141 (3%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
           +PLH A   GH+D   +L+Q GA+      +  T + +AA+  H   V YL+  G  V+ 
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGAST-TIQDKIHGNVALHWAIYAKNHVAIT-T 138
           +D  G T L  +A K    +  + L++ G      QD   G   + WA     HV +   
Sbjct: 73  KDAEGSTCLHLAAKKG-HYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATE-YKHVDLVKL 129

Query: 139 LVSHTSSLEIPNAQGLTPFML 159
           L+S  S + I + +       
Sbjct: 130 LLSKGSDINIRDNEENICLHW 150

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  122 bits (309), Expect = 1e-31
 Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 5/141 (3%)

Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
           +PLH A   GH+D   +L+Q GA+      +  T + +AA+  H   V YL+  G  V+ 
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72

Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGAST-TIQDKIHGNVALHWAIYAKNHVAIT-T 698
           +D  G T L  +A K    +  + L++ G      QD   G   + WA     HV +   
Sbjct: 73  KDAEGSTCLHLAAKKG-HYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATE-YKHVDLVKL 129

Query: 699 LVSHTSSLEIPNAQGLTPFML 719
           L+S  S + I + +       
Sbjct: 130 LLSKGSDINIRDNEENICLHW 150

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  115 bits (290), Expect = 5e-29
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           +  G D+N  D+E    LHWAA +  ++I +  ++    + A+      +PLH A R+  
Sbjct: 131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD-SPLHIAARENR 189

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 637
            D VVL +   +D TL + EG T +  A+          +     +
Sbjct: 190 YDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  109 bits (276), Expect = 3e-27
 Identities = 21/110 (19%), Positives = 47/110 (42%), Gaps = 2/110 (1%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +K  +S+G+ ++    +     LHWA   G +D   +L+    D   ++  G + +H AA
Sbjct: 127 VKLLLSKGSDINIRDNEEN-ICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAA 185

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
           +      V   +++  +V L+++ G T L  ++     +     +     
Sbjct: 186 RENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNS-QVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 84.0 bits (209), Expect = 3e-18
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           +  ++    + A+      +PLH A R+   D VVL +   +D TL + EG T +  A+ 
Sbjct: 161 EILLAAKCDLHAVNIHGD-SPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219

Query: 62  FGHTRIVAYLVAKGIN 77
                    +     +
Sbjct: 220 NSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 83.6 bits (208), Expect = 4e-18
 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 5/113 (4%)

Query: 49  DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 108
                + +H AA+ GH  I   LV  G N++    +  T LM +A     L+  + LI  
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN-NHLEAVKYLIKA 66

Query: 109 GASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH-TSSLEIPNAQGLTPFML 159
           GA    +D   G+  LH A   K H  +   L+S+    +   +  G TP + 
Sbjct: 67  GALVDPKDA-EGSTCLHLAAK-KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIW 117

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 83.6 bits (208), Expect = 4e-18
 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 5/113 (4%)

Query: 609 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 668
                + +H AA+ GH  I   LV  G N++    +  T LM +A     L+  + LI  
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN-NHLEAVKYLIKA 66

Query: 669 GASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH-TSSLEIPNAQGLTPFML 719
           GA    +D   G+  LH A   K H  +   L+S+    +   +  G TP + 
Sbjct: 67  GALVDPKDA-EGSTCLHLAAK-KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIW 117

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 57.8 bits (141), Expect = 3e-09
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 76  INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVA 135
           +N  ++ +N  + L  +A     +D   +L+  GA+     +      L  A    NH+ 
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAG-HVDICHMLVQAGANIDTCSE-DQRTPLMEAAE-NNHLE 58

Query: 136 IT-TLVSHTSSLEIPNAQGLTPFML 159
               L+   + ++  +A+G T   L
Sbjct: 59  AVKYLIKAGALVDPKDAEGSTCLHL 83

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 57.8 bits (141), Expect = 3e-09
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 636 INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVA 695
           +N  ++ +N  + L  +A     +D   +L+  GA+     +      L  A    NH+ 
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAG-HVDICHMLVQAGANIDTCSE-DQRTPLMEAAE-NNHLE 58

Query: 696 IT-TLVSHTSSLEIPNAQGLTPFML 719
               L+   + ++  +A+G T   L
Sbjct: 59  AVKYLIKAGALVDPKDAEGSTCLHL 83

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 44.3 bits (106), Expect = 7e-05
 Identities = 8/39 (20%), Positives = 15/39 (38%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA 569
           F+    DV   + E  T L  A++N+++           
Sbjct: 196 FLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  159 bits (404), Expect = 4e-45
 Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 4/171 (2%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
             +H  A    ++ +K  + +G  +     +   TPL WA+  G +++V  L++ GADP 
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63

Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 666
           ++  E  + +  A+  G+T IV  L+ + +++N+ D NG T L+++      +     L+
Sbjct: 64  ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN-HVKCVEALL 122

Query: 667 TFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 716
             GA  T +    G   +  A+    +  +   + +H   L   N     P
Sbjct: 123 ARGADLTTEAD-SGYTPMDLAVA-LGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  145 bits (368), Expect = 3e-40
 Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 532 VEAGQD-VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
           +  G + VN+PD    T L WA+    IE +++ +  GA    +  + + + L  A+  G
Sbjct: 22  LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERE-SALSLASTGG 80

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
           + D V LL++   D  + D  G T +  A +  H + V  L+A+G ++  +  +G T + 
Sbjct: 81  YTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMD 140

Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDK 677
            +          +++          + 
Sbjct: 141 LAVALG-YRKVQQVIENHILKLFQSNL 166

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  137 bits (347), Expect = 2e-37
 Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 4/156 (2%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           K  + +G  +     +   TPL WA+  G +++V  L++ GADP ++  E  + +  A+ 
Sbjct: 19  KEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLAST 78

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
            G+T IV  L+ + +++N+ D NG T L+++      +     L+  GA  T +    G 
Sbjct: 79  GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN-HVKCVEALLARGADLTTEAD-SGY 136

Query: 122 VALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
             +  A+    +  +   + +H   L   N     P
Sbjct: 137 TPMDLAVA-LGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  132 bits (334), Expect = 1e-35
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 1/116 (0%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           +E G D +    E  + L  A+     +I+   + +   ++    +   TPL +A R  H
Sbjct: 56  LEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG-TPLLYAVRGNH 114

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 647
           +  V  L+  GAD T     G T +  A   G+ ++   +    + +   +     
Sbjct: 115 VKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  123 bits (312), Expect = 1e-32
 Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 8/147 (5%)

Query: 15  GGDLQATPLHWATRQGHLDSVVLLIQHGAD-PTLMDSEGSTCIHQAAQFGHTRIVAYLVA 73
           G    +  +H    QG LD +   ++ G +     D  G T +  A+ FG    V +L+ 
Sbjct: 1   GD---SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE 57

Query: 74  KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH 133
            G + ++  +   +AL  ++      D   LL+       I D  +G   L +A+   NH
Sbjct: 58  WGADPHILAKERESALSLASTG-GYTDIVGLLLERDVDINIYDW-NGGTPLLYAVR-GNH 114

Query: 134 VAIT-TLVSHTSSLEIPNAQGLTPFML 159
           V     L++  + L      G TP  L
Sbjct: 115 VKCVEALLARGADLTTEADSGYTPMDL 141

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 83.6 bits (208), Expect = 9e-19
 Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 5/107 (4%)

Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGIN-VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 670
            S  IHQ A  G    +   + KG N VN  D  G T L+W++     ++  R L+ +GA
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG-EIETVRFLLEWGA 60

Query: 671 STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 716
              I  K     AL  A     +  I   L+     + I +  G TP
Sbjct: 61  DPHILAK-ERESALSLAST-GGYTDIVGLLLERDVDINIYDWNGGTP 105

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  162 bits (412), Expect = 1e-44
 Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 13/184 (7%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
            LL  A  N  +++++  +  GA V+    +   TPLH A +    D V LL++HGADP 
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 666
           L    G+T    AA  G  +++   ++KG +VN  D  G TA M +A     +   + L 
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY-GKVKALKFLY 125

Query: 667 TFGASTTIQDK---------IHGNVALHWAIYAKNHVAIT-TLVSHT-SSLEIPNAQGLT 715
             GA+  ++ K           G  AL  A   K HV +   L+    + +   +  G  
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAE-KGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 716 PFML 719
             + 
Sbjct: 185 ALIH 188

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  151 bits (384), Expect = 6e-41
 Identities = 46/205 (22%), Positives = 82/205 (40%), Gaps = 19/205 (9%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            +  G D         T    AAI   ++++K F+S+GA V+        T    A   G
Sbjct: 58  LLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF-TAFMEAAVYG 116

Query: 591 HLDSVVLLIQHGAD----------PTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVN 639
            + ++  L + GA+             +   G+T +  AA+ GH  ++  L+ + G +VN
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176

Query: 640 LQDRNGMTALMWSAY---KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 696
             D  G  AL+ +            T LL+  GA   ++ +  G   L  A+  K H+ +
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVE-KKHLGL 234

Query: 697 T-TLVSHT-SSLEIPNAQGLTPFML 719
              L+      +   ++ G T  +L
Sbjct: 235 VQRLLEQEHIEINDTDSDGKTALLL 259

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  142 bits (362), Expect = 4e-38
 Identities = 44/188 (23%), Positives = 71/188 (37%), Gaps = 19/188 (10%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA---------T 581
           F+  G DVNE D    T    AA+  +++ +K+   +GA V+      +          T
Sbjct: 91  FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 150

Query: 582 PLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTR----IVAYLVAKGI 636
            L  A  +GH++ + +L+   GAD    D+ G   +  A           I   L+  G 
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210

Query: 637 NVNLQDRNGMTALMWSAYKVFSLDPTRLLIT-FGASTTIQDKIHGNVALHWAIYAKNHVA 695
           +VN++   G T L+ +  K   L   + L+          D   G  AL  A+       
Sbjct: 211 DVNVRGERGKTPLILAVEK-KHLGLVQRLLEQEHIEINDTDS-DGKTALLLAVE-LKLKK 267

Query: 696 IT-TLVSH 702
           I   L   
Sbjct: 268 IAELLCKR 275

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  139 bits (353), Expect = 8e-37
 Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 13/169 (7%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           +  +  GA V+    +   TPLH A +    D V LL++HGADP L    G+T    AA 
Sbjct: 22  QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAI 81

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK---- 117
            G  +++   ++KG +VN  D  G TA M +A     +   + L   GA+  ++ K    
Sbjct: 82  AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY-GKVKALKFLYKRGANVNLRRKTKED 140

Query: 118 -----IHGNVALHWAIYAKNHVAIT-TLVSHT-SSLEIPNAQGLTPFML 159
                  G  AL  A   K HV +   L+    + +   +  G    + 
Sbjct: 141 QERLRKGGATALMDAAE-KGHVEVLKILLDEMGADVNACDNMGRNALIH 188

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  127 bits (323), Expect = 7e-33
 Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 8/150 (5%)

Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLD 593
            +D         T L  AA    +E++K  + + GA V+A     +   L  A       
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR-NALIHALLSSDDS 196

Query: 594 S----VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTA 648
                  LL+ HGAD  +    G T +  A +  H  +V  L+ +  I +N  D +G TA
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA 256

Query: 649 LMWSAYKVFSLDPTRLLITFGASTTIQDKI 678
           L+ +           LL   GAST   D +
Sbjct: 257 LLLAVEL-KLKKIAELLCKRGASTDCGDLV 285

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  119 bits (300), Expect = 7e-30
 Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 19/175 (10%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD----------PTLMDS 50
           +K F+S+GA V+        T    A   G + ++  L + GA+             +  
Sbjct: 88  LKLFLSKGADVNECDFYGF-TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRK 146

Query: 51  EGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAY---KVFSLDPTRLLI 106
            G+T +  AA+ GH  ++  L+ + G +VN  D  G  AL+ +            T LL+
Sbjct: 147 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL 206

Query: 107 TFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHT-SSLEIPNAQGLTPFML 159
             GA   ++ +  G   L  A+  K H+ +   L+      +   ++ G T  +L
Sbjct: 207 DHGADVNVRGE-RGKTPLILAVE-KKHLGLVQRLLEQEHIEINDTDSDGKTALLL 259

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  117 bits (297), Expect = 2e-29
 Identities = 36/151 (23%), Positives = 54/151 (35%), Gaps = 15/151 (9%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSE-GSTCIHQAAQFGHTRIVAYLVAKGINVN 79
             L  A +   +D V  L++ GA+    + E G T +H A Q     IV  L+  G +  
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 80  LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-T 138
           L+ +NG T  + +A    S+   +L ++ GA     D  +G  A   A      V     
Sbjct: 67  LRKKNGATPFLLAAIAG-SVKLLKLFLSKGADVNECDF-YGFTAFMEAAV-YGKVKALKF 123

Query: 139 LVSH----------TSSLEIPNAQGLTPFML 159
           L                 E     G T  M 
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMD 154

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  112 bits (283), Expect = 1e-27
 Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 6/115 (5%)

Query: 533 EAGQDVNEPDSETVTLLHWAAINNRI----EIMKYFISQGAIVDAIGGDLQATPLHWATR 588
           E G DVN  D+     L  A +++       I    +  GA V+  G   + TPL  A  
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK-TPLILAVE 228

Query: 589 QGHLDSV-VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 642
           + HL  V  LL Q   +    DS+G T +  A +    +I   L  +G + +  D
Sbjct: 229 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  111 bits (281), Expect = 3e-27
 Identities = 34/157 (21%), Positives = 55/157 (35%), Gaps = 19/157 (12%)

Query: 2   KYFISQGAIVDAIGGDLQA---------TPLHWATRQGHLDSVVLLIQH-GADPTLMDSE 51
           K+   +GA V+      +          T L  A  +GH++ + +L+   GAD    D+ 
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181

Query: 52  GSTCIHQAAQFGHTR----IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 107
           G   +  A           I   L+  G +VN++   G T L+ +  K   L   + L+ 
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK-KHLGLVQRLLE 240

Query: 108 -FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 142
                    D   G  AL  A+       I   L   
Sbjct: 241 QEHIEINDTDS-DGKTALLLAVE-LKLKKIAELLCKR 275

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  102 bits (256), Expect = 6e-24
 Identities = 33/124 (26%), Positives = 50/124 (40%), Gaps = 8/124 (6%)

Query: 1   MKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDS----VVLLIQHGADPTLMDSEGSTC 55
           +K  + + GA V+A     +   L  A              LL+ HGAD  +    G T 
Sbjct: 164 LKILLDEMGADVNACDNMGR-NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP 222

Query: 56  IHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTI 114
           +  A +  H  +V  L+ +  I +N  D +G TAL+ +           LL   GAST  
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL-KLKKIAELLCKRGASTDC 281

Query: 115 QDKI 118
            D +
Sbjct: 282 GDLV 285

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 89.5 bits (223), Expect = 1e-19
 Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 5/113 (4%)

Query: 49  DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-GMTALMWSAYKVFSLDPTRLLIT 107
             E +  + +A Q     +V  L+  G NVN Q+   G T L  +       D   LL+ 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS-REDIVELLLR 60

Query: 108 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
            GA   ++ K +G      A      V +    +S  + +   +  G T FM 
Sbjct: 61  HGADPVLRKK-NGATPFLLAAI-AGSVKLLKLFLSKGADVNECDFYGFTAFME 111

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 89.5 bits (223), Expect = 1e-19
 Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 5/113 (4%)

Query: 609 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-GMTALMWSAYKVFSLDPTRLLIT 667
             E +  + +A Q     +V  L+  G NVN Q+   G T L  +       D   LL+ 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS-REDIVELLLR 60

Query: 668 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
            GA   ++ K +G      A      V +    +S  + +   +  G T FM 
Sbjct: 61  HGADPVLRKK-NGATPFLLAAI-AGSVKLLKLFLSKGADVNECDFYGFTAFME 111

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  162 bits (412), Expect = 1e-44
 Identities = 34/185 (18%), Positives = 72/185 (38%), Gaps = 9/185 (4%)

Query: 534 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 593
           + +D  + D    +  ++A  +N + ++   ++ GA+ + +  +    PLH A       
Sbjct: 20  SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENE---FPLHQAATLEDTK 76

Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG-MTALMWS 652
            V +L+  G D +  D +G+T ++ A   G+ + V   V K   +    + G  T+   +
Sbjct: 77  IVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHA 136

Query: 653 AYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNA 711
                 +      ++   S    D       +H  I    HV +   L+ + +S    N+
Sbjct: 137 VMLN-DVSIVSYFLSEIPS--TFDLAILLSCIHITIK-NGHVDMMILLLDYMTSTNTNNS 192

Query: 712 QGLTP 716
               P
Sbjct: 193 LLFIP 197

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  152 bits (386), Expect = 3e-41
 Identities = 22/188 (11%), Positives = 60/188 (31%), Gaps = 13/188 (6%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            + +G D ++ D +  T L++A  +  ++ +K F+ +   +   G     T  + A    
Sbjct: 81  LLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN 140

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT-AL 649
            +  V   +          +   +CIH   + GH  ++  L+    + N  +       +
Sbjct: 141 DVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDI 199

Query: 650 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEI 708
             +      ++  + L  +  +           A    +   +   I   ++      + 
Sbjct: 200 KLAIDN-KDIEMLQALFKYDIN--------IYSANLENVL-LDDAEIAKMIIEKHVEYKS 249

Query: 709 PNAQGLTP 716
            +      
Sbjct: 250 DSYTKDLD 257

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  130 bits (329), Expect = 1e-33
 Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 9/158 (5%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +   ++ GA+ + +  +    PLH A        V +L+  G D +  D +G+T ++ A 
Sbjct: 47  VCTLLNAGALKNLLENE---FPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAV 103

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNG-MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 119
             G+ + V   V K   +    + G  T+   +      +      ++   S    D   
Sbjct: 104 DSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN-DVSIVSYFLSEIPS--TFDLAI 160

Query: 120 GNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
               +H  I    HV +   L+ + +S    N+    P
Sbjct: 161 LLSCIHITIK-NGHVDMMILLLDYMTSTNTNNSLLFIP 197

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  121 bits (306), Expect = 1e-30
 Identities = 16/158 (10%), Positives = 44/158 (27%), Gaps = 13/158 (8%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +K F+ +   +   G     T  + A     +  V   +          +   +CIH   
Sbjct: 111 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITI 169

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMT-ALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 119
           + GH  ++  L+    + N  +       +  +      ++  + L  +  +        
Sbjct: 170 KNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDN-KDIEMLQALFKYDIN-------- 220

Query: 120 GNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
              A    +   +   I   ++      +  +      
Sbjct: 221 IYSANLENVL-LDDAEIAKMIIEKHVEYKSDSYTKDLD 257

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  110 bits (278), Expect = 5e-27
 Identities = 8/113 (7%), Positives = 30/113 (26%), Gaps = 7/113 (6%)

Query: 537 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 596
                 +  ++ +H    N  +++M   +      +     L    +  A     ++ + 
Sbjct: 153 PSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ 212

Query: 597 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
            L ++  +         +   +        I   ++ K +            +
Sbjct: 213 ALFKYDINI-------YSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 94.1 bits (235), Expect = 3e-21
 Identities = 26/141 (18%), Positives = 44/141 (31%), Gaps = 10/141 (7%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
                 T       +   +    D    D  G +  + A    + R+V  L+  G   NL
Sbjct: 3   DLSRINT--WKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL 59

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 139
            +      L  +A         ++L+  G   +  D   GN AL++A+    ++      
Sbjct: 60  LE--NEFPLHQAATL-EDTKIVKILLFSGLDDSQFDD-KGNTALYYAVD-SGNMQTVKLF 114

Query: 140 VSHTSSLEIPNAQGL-TPFML 159
           V     L      G  T F  
Sbjct: 115 VKKNWRLMFYGKTGWKTSFYH 135

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 94.1 bits (235), Expect = 3e-21
 Identities = 26/141 (18%), Positives = 44/141 (31%), Gaps = 10/141 (7%)

Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
                 T       +   +    D    D  G +  + A    + R+V  L+  G   NL
Sbjct: 3   DLSRINT--WKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL 59

Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 699
            +      L  +A         ++L+  G   +  D   GN AL++A+    ++      
Sbjct: 60  LE--NEFPLHQAATL-EDTKIVKILLFSGLDDSQFDD-KGNTALYYAVD-SGNMQTVKLF 114

Query: 700 VSHTSSLEIPNAQGL-TPFML 719
           V     L      G  T F  
Sbjct: 115 VKKNWRLMFYGKTGWKTSFYH 135

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 90.7 bits (226), Expect = 4e-20
 Identities = 12/114 (10%), Positives = 31/114 (27%), Gaps = 10/114 (8%)

Query: 532 VEAGQDVNEPDSETVT-LLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
           ++     N  +S      +  A  N  IE+++        +         +         
Sbjct: 181 LDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY--------SANLENVLLD 232

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN 644
             +   ++I+   +           I +  +     I      + + VN   +N
Sbjct: 233 DAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEI-ISKNKELRLMYVNCVKKN 285

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 87.2 bits (217), Expect = 7e-19
 Identities = 5/88 (5%), Positives = 20/88 (22%), Gaps = 7/88 (7%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
              +      +     L    +  A     ++ +  L ++  +         +   +   
Sbjct: 178 ILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI-------YSANLENVL 230

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTAL 89
                I   ++ K +            +
Sbjct: 231 LDDAEIAKMIIEKHVEYKSDSYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 60.2 bits (147), Expect = 6e-10
 Identities = 6/84 (7%), Positives = 20/84 (23%), Gaps = 9/84 (10%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           ++        +         +           +   ++I+   +           I +  
Sbjct: 211 LQALFKYDINIY--------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNN 262

Query: 61  QFGHTRIVAYLVAKGINVNLQDRN 84
           +     I      + + VN   +N
Sbjct: 263 KLDEI-ISKNKELRLMYVNCVKKN 285

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  156 bits (398), Expect = 3e-44
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 5/157 (3%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
             +H  A    +  +   I Q  +++    +   TPL WA   G +  V  L+Q+GADP 
Sbjct: 5   LSVHQLAAQGEMLYLATRIEQENVINHTDEEGF-TPLMWAAAHGQIAVVEFLLQNGADPQ 63

Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 666
           L+     + +  A   G+T IV  L+  G++VN  D NG T L+++ +    +   ++L+
Sbjct: 64  LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN-HVKCVKMLL 122

Query: 667 TFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
             GA  TI+    G  ++  A+    + ++   + SH
Sbjct: 123 ESGADPTIETD-SGYNSMDLAVA-LGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  146 bits (371), Expect = 1e-40
 Identities = 31/146 (21%), Positives = 61/146 (41%), Gaps = 2/146 (1%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           +E    +N  D E  T L WAA + +I ++++ +  GA    +G   + + L  A  +G+
Sbjct: 23  IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG-RESALSLACSKGY 81

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
            D V +L+  G D    D  G T +  A    H + V  L+  G +  ++  +G  ++  
Sbjct: 82  TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL 141

Query: 652 SAYKVFSLDPTRLLITFGASTTIQDK 677
           +          +++ +         K
Sbjct: 142 AVALG-YRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  134 bits (341), Expect = 1e-36
 Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 5/142 (3%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
              I Q  +++    +   TPL WA   G +  V  L+Q+GADP L+     + +  A  
Sbjct: 20  ATRIEQENVINHTDEEGF-TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACS 78

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
            G+T IV  L+  G++VN  D NG T L+++ +    +   ++L+  GA  TI+    G 
Sbjct: 79  KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIETD-SGY 136

Query: 122 VALHWAIYAKNHVAIT-TLVSH 142
            ++  A+    + ++   + SH
Sbjct: 137 NSMDLAVA-LGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  127 bits (323), Expect = 3e-34
 Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 4/140 (2%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
             +H    QG +  +   I+        D EG T +  AA  G   +V +L+  G +  L
Sbjct: 5   LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 139
             +   +AL  +  K    D  ++L+  G      D  +G   L +A++  NHV     L
Sbjct: 65  LGKGRESALSLACSK-GYTDIVKMLLDCGVDVNEYDW-NGGTPLLYAVH-GNHVKCVKML 121

Query: 140 VSHTSSLEIPNAQGLTPFML 159
           +   +   I    G     L
Sbjct: 122 LESGADPTIETDSGYNSMDL 141

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 92.5 bits (231), Expect = 6e-22
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           K  +  G  V+    +   TPL +A    H+  V +L++ GADPT+    G   +  A  
Sbjct: 86  KMLLDCGVDVNEYDWNGG-TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA 144

Query: 62  FGHTRIVAYLVAKGINVNLQDR 83
            G+  +   + +  + +    +
Sbjct: 145 LGYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 87.1 bits (217), Expect = 5e-20
 Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 4/109 (3%)

Query: 52  GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 111
            S  +HQ A  G    +A  + +   +N  D  G T LMW+A     +     L+  GA 
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHG-QIAVVEFLLQNGAD 61

Query: 112 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
             +  K     AL  A   K +  I   L+     +   +  G TP + 
Sbjct: 62  PQLLGK-GRESALSLACS-KGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 108

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 87.1 bits (217), Expect = 5e-20
 Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 4/109 (3%)

Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
            S  +HQ A  G    +A  + +   +N  D  G T LMW+A     +     L+  GA 
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHG-QIAVVEFLLQNGAD 61

Query: 672 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
             +  K     AL  A   K +  I   L+     +   +  G TP + 
Sbjct: 62  PQLLGK-GRESALSLACS-KGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 108

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 47.8 bits (115), Expect = 2e-06
 Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 4/77 (5%)

Query: 84  NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 142
               ++   A +   +      I         D+  G   L WA      +A+   L+ +
Sbjct: 2   ANSLSVHQLAAQ-GEMLYLATRIEQENVINHTDE-EGFTPLMWAAA-HGQIAVVEFLLQN 58

Query: 143 TSSLEIPNAQGLTPFML 159
            +  ++      +   L
Sbjct: 59  GADPQLLGKGRESALSL 75

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 47.8 bits (115), Expect = 2e-06
 Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 4/77 (5%)

Query: 644 NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
               ++   A +   +      I         D+  G   L WA      +A+   L+ +
Sbjct: 2   ANSLSVHQLAAQ-GEMLYLATRIEQENVINHTDE-EGFTPLMWAAA-HGQIAVVEFLLQN 58

Query: 703 TSSLEIPNAQGLTPFML 719
            +  ++      +   L
Sbjct: 59  GADPQLLGKGRESALSL 75

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  158 bits (401), Expect = 2e-43
 Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 7/190 (3%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            +  G  VN   ++ V+ LH A +   +  +K  +  GA V+ +  D   TPL  A   G
Sbjct: 78  LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH-TPLFNACVSG 136

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
             D V LL+QHGA     +S+ ++ IH+AA+ GH   V  L+A G N++ +  +  T L 
Sbjct: 137 SWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLY 195

Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIP 709
            +          + L+  GA   +      +  LH  +       +   L+   +  +  
Sbjct: 196 LACENQ-QRACVKKLLESGAD--VNQGKGQDSPLHAVVR-TASEELACLLMDFGADTQAK 251

Query: 710 NAQGLTPFML 719
           NA+G  P  L
Sbjct: 252 NAEGKRPVEL 261

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  156 bits (398), Expect = 8e-43
 Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 6/171 (3%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           ++ G  VN   ++  T L  A ++   + +   +  GA V        A+P+H A R+GH
Sbjct: 112 LKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGH 169

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
           ++ V  LI +G +     S   T ++ A +      V  L+  G +VN Q +   + L  
Sbjct: 170 VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHA 228

Query: 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 702
                 S +   LL+ FGA T  ++   G   +      ++ +A   L   
Sbjct: 229 VVRTA-SEELACLLMDFGADTQAKNA-EGKRPVELVPP-ESPLAQLFLERE 276

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  146 bits (372), Expect = 2e-39
 Identities = 43/190 (22%), Positives = 75/190 (39%), Gaps = 8/190 (4%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            V  G  +   D +   +        R       +S   + DA+      +P+H A   G
Sbjct: 14  LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSD---WSPMHEAAIHG 70

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
           H  S+  LI  G    ++ ++  + +H+A   GH   V  L+  G  VN    +  T L 
Sbjct: 71  HQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLF 130

Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIP 709
            +     S D   LL+  GAS  +Q +      +H A   + HV    +L+++  +++  
Sbjct: 131 NACVSG-SWDCVNLLLQHGAS--VQPESDLASPIHEAAR-RGHVECVNSLIAYGGNIDHK 186

Query: 710 NAQGLTPFML 719
            +   TP  L
Sbjct: 187 ISHLGTPLYL 196

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  132 bits (334), Expect = 2e-34
 Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 8/156 (5%)

Query: 5   ISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH 64
           +S   + DA+      +P+H A   GH  S+  LI  G    ++ ++  + +H+A   GH
Sbjct: 48  LSNPLMGDAVSD---WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGH 104

Query: 65  TRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 124
              V  L+  G  VN    +  T L  +     S D   LL+  GAS  +Q +      +
Sbjct: 105 LSCVKILLKHGAQVNGVTADWHTPLFNACVSG-SWDCVNLLLQHGAS--VQPESDLASPI 161

Query: 125 HWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
           H A   + HV    +L+++  +++   +   TP  L
Sbjct: 162 HEAAR-RGHVECVNSLIAYGGNIDHKISHLGTPLYL 196

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  127 bits (321), Expect = 1e-32
 Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 7/160 (4%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +K  +  GA V+ +  D   TPL  A   G  D V LL+QHGA     +S+ ++ IH+AA
Sbjct: 108 VKILLKHGAQVNGVTADWH-TPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAA 165

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
           + GH   V  L+A G N++ +  +  T L  +          + L+  GA   +      
Sbjct: 166 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQ-QRACVKKLLESGAD--VNQGKGQ 222

Query: 121 NVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
           +  LH  +       +   L+   +  +  NA+G  P  L
Sbjct: 223 DSPLHAVVR-TASEELACLLMDFGADTQAKNAEGKRPVEL 261

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  125 bits (317), Expect = 4e-32
 Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 6/141 (4%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
              +  GA V        A+P+H A R+GH++ V  LI +G +     S   T ++ A +
Sbjct: 142 NLLLQHGASVQP--ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACE 199

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
                 V  L+  G +VN Q +   + L        S +   LL+ FGA T  ++   G 
Sbjct: 200 NQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTA-SEELACLLMDFGADTQAKNA-EGK 256

Query: 122 VALHWAIYAKNHVAITTLVSH 142
             +      ++ +A   L   
Sbjct: 257 RPVELVPP-ESPLAQLFLERE 276

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  120 bits (303), Expect = 3e-30
 Identities = 25/173 (14%), Positives = 60/173 (34%), Gaps = 16/173 (9%)

Query: 552 AAINNRIEIMKYFISQGAIVDAIGGDLQ----ATPLHWATRQGHLDSVVLLIQHGADPTL 607
            + ++        + +G+ + ++ G       + P       G       L+ +      
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGDA 56

Query: 608 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 667
           +     + +H+AA  GH   +  L+++G  VN+   + ++ L  +      L   ++L+ 
Sbjct: 57  VS--DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG-GHLSCVKILLK 113

Query: 668 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
            GA          +  L  A            L+ H +S++  +    +P   
Sbjct: 114 HGAQVNGVTA-DWHTPLFNACV-SGSWDCVNLLLQHGASVQPES-DLASPIHE 163

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  114 bits (288), Expect = 3e-28
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           +  G +++   S   T L+ A  N +   +K  +  GA V+   G  Q +PLH   R   
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ--GKGQDSPLHAVVRTAS 234

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 639
            +   LL+  GAD    ++EG   +             +L  +G ++ 
Sbjct: 235 EELACLLMDFGADTQAKNAEGKRPVELVPPESPL-AQLFLEREGASLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  106 bits (268), Expect = 1e-25
 Identities = 25/164 (15%), Positives = 57/164 (34%), Gaps = 16/164 (9%)

Query: 1   MKYFISQGAIVDAIGGDLQ----ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCI 56
               + +G+ + ++ G       + P       G       L+ +      +     + +
Sbjct: 11  SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGDAVS--DWSPM 63

Query: 57  HQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 116
           H+AA  GH   +  L+++G  VN+   + ++ L  +      L   ++L+  GA      
Sbjct: 64  HEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG-GHLSCVKILLKHGAQVNGVT 122

Query: 117 KIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
               +  L  A            L+ H +S++  +    +P   
Sbjct: 123 A-DWHTPLFNACV-SGSWDCVNLLLQHGASVQPES-DLASPIHE 163

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 84.1 bits (209), Expect = 6e-18
 Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 16/137 (11%)

Query: 26  ATRQGHLDSVVLLIQHGADPTLMDSE-----GSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
            +   H      L+  G+    MD +     GS         G       L++  +  + 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGD- 55

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 139
              +  + +  +A         R LI+ G +  I         LH A     H++    L
Sbjct: 56  -AVSDWSPMHEAAIHG-HQLSLRNLISQGWAVNIITA-DHVSPLHEACL-GGHLSCVKIL 111

Query: 140 VSHTSSLEIPNAQGLTP 156
           + H + +    A   TP
Sbjct: 112 LKHGAQVNGVTADWHTP 128

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 83.7 bits (208), Expect = 9e-18
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           K  +  GA V+   G  Q +PLH   R    +   LL+  GAD    ++EG   +     
Sbjct: 207 KKLLESGADVNQ--GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP 264

Query: 62  FGHTRIVAYLVAKGINVN 79
                   +L  +G ++ 
Sbjct: 265 ESPL-AQLFLEREGASLP 281

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  156 bits (396), Expect = 4e-43
 Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 10/195 (5%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
           F + G++++  ++   T LH A I     +++  ++ GA   A+    Q T  H A    
Sbjct: 32  FQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ-TAAHLACEHR 90

Query: 591 HLDSVVLLIQHGADPTL----MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-G 645
               +  L+   A  TL     + +G T +H A        V  L+ +G +++  D   G
Sbjct: 91  SPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSG 150

Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTS 704
            + L+ +     SL   +LL+  GA+   Q    G+ ALH A   +  + +  TLV   +
Sbjct: 151 RSPLIHAVENN-SLSMVQLLLQHGANVNAQMY-SGSSALHSASG-RGLLPLVRTLVRSGA 207

Query: 705 SLEIPNAQGLTPFML 719
              + N    TP M+
Sbjct: 208 DSSLKNCHNDTPLMV 222

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  149 bits (380), Expect = 5e-41
 Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 10/177 (5%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI----VDAIGGDLQATPLHWAT 587
           V AG      D    T  H A  +     ++  +   A     ++A   D   T LH A 
Sbjct: 66  VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL-TALHVAV 124

Query: 588 RQGHLDSVVLLIQHGADPTLMDSE-GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGM 646
                ++V LL++ GAD   +D + G + +  A +     +V  L+  G NVN Q  +G 
Sbjct: 125 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGS 184

Query: 647 TALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
           +AL  ++ +   L   R L+  GA +++++  H +  L  A   +  + I     + 
Sbjct: 185 SALHSASGR-GLLPLVRTLVRSGADSSLKNC-HNDTPLMVARS-RRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  148 bits (377), Expect = 1e-40
 Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 12/188 (6%)

Query: 538 VNEPDSETVTLLHWAAINNRIEIMKYFIS----QGAIVDAIGGDLQATPLHWATRQGHLD 593
               D +  T LH A +   +  +   ++     G  +D      Q TPLH A       
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLAVITTLPS 60

Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG----INVNLQDRNGMTAL 649
            V LL+  GA P  +D  G T  H A +      +  L+       +++  ++ +G+TAL
Sbjct: 61  VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120

Query: 650 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEI 708
             +       +  +LL+  GA     D   G   L  A+   N +++   L+ H +++  
Sbjct: 121 HVAVNT-ECQETVQLLLERGADIDAVDIKSGRSPLIHAVE-NNSLSMVQLLLQHGANVNA 178

Query: 709 PNAQGLTP 716
               G + 
Sbjct: 179 QMYSGSSA 186

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  141 bits (359), Expect = 4e-38
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 1/139 (0%)

Query: 533 EAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL 592
               D+   + + +T LH A      E ++  + +GA +DA+      +PL  A     L
Sbjct: 104 PGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL 163

Query: 593 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 652
             V LL+QHGA+       GS+ +H A+  G   +V  LV  G + +L++ +  T LM +
Sbjct: 164 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223

Query: 653 AYKVFSLDPTRLLITFGAS 671
             +   +D  R   T  AS
Sbjct: 224 RSR-RVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  125 bits (317), Expect = 1e-32
 Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 8/159 (5%)

Query: 3   YFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQF 62
            F   G  +D      Q TPLH A        V LL+  GA P  +D  G T  H A + 
Sbjct: 31  LFQQGGRELDIYNNLRQ-TPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH 89

Query: 63  GHTRIVAYLVAKG----INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 118
                +  L+       +++  ++ +G+TAL  +       +  +LL+  GA     D  
Sbjct: 90  RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT-ECQETVQLLLERGADIDAVDIK 148

Query: 119 HGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
            G   L  A+   N +++   L+ H +++      G + 
Sbjct: 149 SGRSPLIHAVE-NNSLSMVQLLLQHGANVNAQMYSGSSA 186

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  125 bits (317), Expect = 1e-32
 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 10/164 (6%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTL----MDSEGSTCIH 57
           +  ++ GA   A+    Q T  H A        +  L+   A  TL     + +G T +H
Sbjct: 63  RLLVTAGASPMALDRHGQ-TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121

Query: 58  QAAQFGHTRIVAYLVAKGINVNLQDRN-GMTALMWSAYKVFSLDPTRLLITFGASTTIQD 116
            A        V  L+ +G +++  D   G + L+ +     SL   +LL+  GA+   Q 
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN-SLSMVQLLLQHGANVNAQM 180

Query: 117 KIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
              G+ ALH A   +  + +  TLV   +   + N    TP M+
Sbjct: 181 Y-SGSSALHSASG-RGLLPLVRTLVRSGADSSLKNCHNDTPLMV 222

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  119 bits (301), Expect = 2e-30
 Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 10/147 (6%)

Query: 2   KYFISQGAI----VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE-GSTCI 56
           +  +   A     ++A   D   T LH A      ++V LL++ GAD   +D + G + +
Sbjct: 96  RALLDSAAPGTLDLEARNYDGL-TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL 154

Query: 57  HQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 116
             A +     +V  L+  G NVN Q  +G +AL  ++ +   L   R L+  GA +++++
Sbjct: 155 IHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR-GLLPLVRTLVRSGADSSLKN 213

Query: 117 KIHGNVALHWAIYAKNHVAIT-TLVSH 142
             H +  L  A   +  + I     + 
Sbjct: 214 C-HNDTPLMVARS-RRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  112 bits (283), Expect = 5e-28
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 1/110 (0%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           +  + +GA +DA+      +PL  A     L  V LL+QHGA+       GS+ +H A+ 
Sbjct: 133 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASG 192

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 111
            G   +V  LV  G + +L++ +  T LM +  +   +D  R   T  AS
Sbjct: 193 RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR-RVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  111 bits (281), Expect = 1e-27
 Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 13/149 (8%)

Query: 21  TPLHWATRQGHLDSVVLLI----QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI 76
           TPLH A  QG+L +V  L+    Q G +  + ++   T +H A       +V  LV  G 
Sbjct: 11  TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 70

Query: 77  NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTT----IQDKIHGNVALHWAIYAKN 132
           +    DR+G TA   +     S    R L+   A  T     ++   G  ALH A+    
Sbjct: 71  SPMALDRHGQTAAHLACEH-RSPTCLRALLDSAAPGTLDLEARNY-DGLTALHVAVN-TE 127

Query: 133 HVAIT-TLVSHTSSLEIPNAQ-GLTPFML 159
                  L+   + ++  + + G +P + 
Sbjct: 128 CQETVQLLLERGADIDAVDIKSGRSPLIH 156

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 80.2 bits (199), Expect = 7e-17
 Identities = 33/120 (27%), Positives = 45/120 (37%), Gaps = 12/120 (10%)

Query: 49  DSEGSTCIHQAAQFGHTRIVAYLV----AKGINVNLQDRNGMTALMWSAYKVFSLDPTRL 104
           D +G T +H A   G+   V  LV      G  +++ +    T L  +          RL
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITT-LPSVVRL 64

Query: 105 LITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH----TSSLEIPNAQGLTPFML 159
           L+T GAS    D+ HG  A H A            L+      T  LE  N  GLT   +
Sbjct: 65  LVTAGASPMALDR-HGQTAAHLACE-HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 47.1 bits (113), Expect = 9e-06
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA 569
           V +G D +  +    T L  A     I+I++   ++ A
Sbjct: 203 VRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 46.3 bits (111), Expect = 2e-05
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 8/87 (9%)

Query: 78  VNLQDRNGMTALMWSAYKVFSLDPTRLLITF----GASTTIQDKIHGNVALHWAIYAKNH 133
               D +G T L  +  +  +L     L+      G    I +       LH A+     
Sbjct: 2   ATRADEDGDTPLHIAVVQG-NLPAVHRLVNLFQQGGRELDIYNN-LRQTPLHLAVI-TTL 58

Query: 134 VAIT-TLVSHTSSLEIPNAQGLTPFML 159
            ++   LV+  +S    +  G T   L
Sbjct: 59  PSVVRLLVTAGASPMALDRHGQTAAHL 85

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  154 bits (393), Expect = 5e-43
 Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 6/173 (3%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI-VDAIGGDLQATPLHWATRQG 590
           +EA  D N  D+   T LH A   +   + +  I   A  +DA   D   TPL  A R  
Sbjct: 45  LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT-TPLILAARLA 103

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
               +  LI   AD   +D  G + +H AA   +      L+  G N ++Q+    T L 
Sbjct: 104 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 163

Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 702
            +A +  S +  ++L+   A+  I D     +    A   + H  I   L  +
Sbjct: 164 LAARE-GSYETAKVLLDHFANRDITDH-MDRLPRDIAQE-RMHHDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  146 bits (370), Expect = 8e-40
 Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 7/192 (3%)

Query: 531 FVEAGQDV-NEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ 589
           F+  G  + N+ D    T LH AA  +R +  K  +   A  +      + TPLH A   
Sbjct: 10  FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSA 68

Query: 590 GHLDSVVLLIQHGA-DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA 648
                  +LI++ A D      +G+T +  AA+     ++  L+    +VN  D  G +A
Sbjct: 69  DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 128

Query: 649 LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLE 707
           L W+A    ++D   +L+  GA+  +Q+       L  A   +        L+ H ++ +
Sbjct: 129 LHWAAAV-NNVDAAVVLLKNGANKDMQNN-REETPLFLAAR-EGSYETAKVLLDHFANRD 185

Query: 708 IPNAQGLTPFML 719
           I +     P  +
Sbjct: 186 ITDHMDRLPRDI 197

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  132 bits (334), Expect = 6e-35
 Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 5/166 (3%)

Query: 556 NRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTC 615
           +   ++  FI QGA +         T LH A R    D+   L++  AD  + D+ G T 
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 616 IHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTI 674
           +H A       +   L+     +++ +  +G T L+ +A           LI   A    
Sbjct: 62  LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-AVEGMLEDLINSHADVNA 120

Query: 675 QDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
            D   G  ALHWA    N+V     L+ + ++ ++ N +  TP  L
Sbjct: 121 VDD-LGKSALHWAAA-VNNVDAAVVLLKNGANKDMQNNREETPLFL 164

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  125 bits (318), Expect = 6e-33
 Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 5/160 (3%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
             FI QGA +         T LH A R    D+   L++  AD  + D+ G T +H A  
Sbjct: 8   SDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS 67

Query: 62  FGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
                +   L+     +++ +  +G T L+ +A           LI   A     D   G
Sbjct: 68  ADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-AVEGMLEDLINSHADVNAVDD-LG 125

Query: 121 NVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
             ALHWA    N+V     L+ + ++ ++ N +  TP  L
Sbjct: 126 KSALHWAAA-VNNVDAAVVLLKNGANKDMQNNREETPLFL 164

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  122 bits (310), Expect = 8e-32
 Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 6/143 (4%)

Query: 2   KYFISQGAI-VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +  I   A  +DA   D   TPL  A R      +  LI   AD   +D  G + +H AA
Sbjct: 75  QILIRNRATDLDARMHDGT-TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA 133

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
              +      L+  G N ++Q+    T L  +A +  S +  ++L+   A+  I D    
Sbjct: 134 AVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE-GSYETAKVLLDHFANRDITDH-MD 191

Query: 121 NVALHWAIYAKNHVAITT-LVSH 142
            +    A   + H  I   L  +
Sbjct: 192 RLPRDIAQE-RMHHDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  112 bits (282), Expect = 4e-28
 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 1/108 (0%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           + +  DVN  D    + LHWAA  N ++     +  GA  D      + TPL  A R+G 
Sbjct: 112 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE-TPLFLAAREGS 170

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 639
            ++  +L+ H A+  + D         A +  H  IV  L    +  +
Sbjct: 171 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 91.3 bits (228), Expect = 6e-21
 Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 6/133 (4%)

Query: 30  GHLDSVVLLIQHGAD-PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA 88
                +   I  GA      D  G T +H AA++  +     L+    + N+QD  G T 
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 89  LMWSAYKVFSLDPTRLLITFGASTT-IQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSL 146
           L  +     +    ++LI   A+    +    G   L  A        +   L++  + +
Sbjct: 62  LHAAVSAD-AQGVFQILIRNRATDLDARMH-DGTTPLILAAR-LAVEGMLEDLINSHADV 118

Query: 147 EIPNAQGLTPFML 159
              +  G +    
Sbjct: 119 NAVDDLGKSALHW 131

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 79.4 bits (197), Expect = 1e-16
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
              +  GA  D      + TPL  A R+G  ++  +L+ H A+  + D         A +
Sbjct: 142 VVLLKNGANKDMQNNREE-TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 200

Query: 62  FGHTRIVAYLVAKGINVN 79
             H  IV  L    +  +
Sbjct: 201 RMHHDIVRLLDEYNLVRS 218

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  153 bits (390), Expect = 8e-43
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 10/179 (5%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
             +    V+E D+E  T L+ A  NN IEI K  I +GA ++        +P  +A  QG
Sbjct: 25  LQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI-SDSPYLYAGAQG 83

Query: 591 HLDSVVLLIQHGA-DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI-NVNLQDRNGMTA 648
             + +  +++H   D    +  G   +  AA+ GH   V  L+  G  +++ Q+  G TA
Sbjct: 84  RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTA 143

Query: 649 LMWSAYKVFS----LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 702
           L+ +           D  +LL+  GA  +I+D   G  A+ +A   K +  I+  L  +
Sbjct: 144 LIEAVGLREGNQLYQDIVKLLMENGADQSIKDN-SGRTAMDYANQ-KGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  147 bits (373), Expect = 1e-40
 Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 10/180 (5%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
            LL  A   +  ++ +        VD +  +   TPL+ A     ++    LI  GAD  
Sbjct: 8   ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGN-TPLNIAVHNNDIEIAKALIDRGADIN 66

Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLL 665
           L +S   +    A   G T I+AY++     ++N  +R G  AL+ +A K   +D  +LL
Sbjct: 67  LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG-HIDNVKLL 125

Query: 666 ITFG-ASTTIQDKIHGNVALHWAIYA----KNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
           +  G      Q+   G  AL  A+      + +  I   L+ + +   I +  G T    
Sbjct: 126 LEDGREDIDFQND-FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY 184

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  124 bits (314), Expect = 1e-32
 Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 10/165 (6%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           +        VD +  +   TPL+ A     ++    LI  GAD  L +S   +    A  
Sbjct: 23  EILQDTTYQVDEVDTEGN-TPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA 81

Query: 62  FGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFG-ASTTIQDKIH 119
            G T I+AY++     ++N  +R G  AL+ +A K   +D  +LL+  G      Q+   
Sbjct: 82  QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG-HIDNVKLLLEDGREDIDFQND-F 139

Query: 120 GNVALHWAIYA----KNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
           G  AL  A+      + +  I   L+ + +   I +  G T    
Sbjct: 140 GYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY 184

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  113 bits (285), Expect = 9e-29
 Identities = 24/142 (16%), Positives = 53/142 (37%), Gaps = 6/142 (4%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
             L  A ++       +L         +D+EG+T ++ A       I   L+ +G ++NL
Sbjct: 8   ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGAS-TTIQDKIHGNVALHWAIYAKNHVAIT-T 138
           Q+    +  +++  +    +    ++          ++ +G  AL  A   K H+     
Sbjct: 68  QNSISDSPYLYAGAQ-GRTEILAYMLKHATPDLNKHNR-YGGNALIPAAE-KGHIDNVKL 124

Query: 139 LVSHTSS-LEIPNAQGLTPFML 159
           L+      ++  N  G T  + 
Sbjct: 125 LLEDGREDIDFQNDFGYTALIE 146

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 95.6 bits (239), Expect = 1e-22
 Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 15/115 (13%)

Query: 2   KYFISQGA----IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG-ADPTLMDSEGSTCI 56
            Y +          +  GG      L  A  +GH+D+V LL++ G  D    +  G T +
Sbjct: 89  AYMLKHATPDLNKHNRYGG----NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTAL 144

Query: 57  HQAAQF-----GHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 106
            +A         +  IV  L+  G + +++D +G TA+ ++  K    + +++L 
Sbjct: 145 IEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQK-GYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 82.9 bits (206), Expect = 3e-18
 Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 5/113 (4%)

Query: 49  DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 108
             E    +  A Q    ++   L      V+  D  G T L  + +    ++  + LI  
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN-NDIEIAKALIDR 61

Query: 109 GASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH-TSSLEIPNAQGLTPFML 159
           GA   +Q+    +    +A   +    I   ++ H T  L   N  G    + 
Sbjct: 62  GADINLQNS-ISDSPYLYAGA-QGRTEILAYMLKHATPDLNKHNRYGGNALIP 112

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 82.9 bits (206), Expect = 3e-18
 Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 5/113 (4%)

Query: 609 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 668
             E    +  A Q    ++   L      V+  D  G T L  + +    ++  + LI  
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN-NDIEIAKALIDR 61

Query: 669 GASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH-TSSLEIPNAQGLTPFML 719
           GA   +Q+    +    +A   +    I   ++ H T  L   N  G    + 
Sbjct: 62  GADINLQNS-ISDSPYLYAGA-QGRTEILAYMLKHATPDLNKHNRYGGNALIP 112

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 4/81 (4%)

Query: 80  LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-T 138
           ++       L  +  +  +     +L          D   GN  L+ A++  N + I   
Sbjct: 1   MKTYEVGALLEAANQRD-TKKVKEILQDTTYQVDEVDT-EGNTPLNIAVH-NNDIEIAKA 57

Query: 139 LVSHTSSLEIPNAQGLTPFML 159
           L+   + + + N+   +P++ 
Sbjct: 58  LIDRGADINLQNSISDSPYLY 78

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 4/81 (4%)

Query: 640 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-T 698
           ++       L  +  +  +     +L          D   GN  L+ A++  N + I   
Sbjct: 1   MKTYEVGALLEAANQRD-TKKVKEILQDTTYQVDEVDT-EGNTPLNIAVH-NNDIEIAKA 57

Query: 699 LVSHTSSLEIPNAQGLTPFML 719
           L+   + + + N+   +P++ 
Sbjct: 58  LIDRGADINLQNSISDSPYLY 78

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 45.5 bits (109), Expect = 2e-05
 Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH 41
           K  +  GA         + T + +A ++G+ +   +L Q+
Sbjct: 162 KLLMENGADQSIKDNSGR-TAMDYANQKGYTEISKILAQY 200

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  154 bits (392), Expect = 1e-42
 Identities = 53/201 (26%), Positives = 74/201 (36%), Gaps = 12/201 (5%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
                  +N  ++   T LH A I N+ EI +  +  G   +        TPLH A  QG
Sbjct: 31  VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGN-TPLHLACEQG 89

Query: 591 HLDSVVLLIQHGADPTLM------DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-R 643
            L SV +L Q    P L       +  G TC+H A+  G+  IV  LV+ G +VN Q+  
Sbjct: 90  CLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC 149

Query: 644 NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
           NG TAL  +     + D   LL+  GA         G          +    I   L   
Sbjct: 150 NGRTALHLAVDLQ-NPDLVSLLLKCGADVNRVTY-QGYSPYQLTWG-RPSTRIQQQLGQL 206

Query: 703 TSSLEIPNAQGLTPFMLLEEN 723
           T        +         E+
Sbjct: 207 TLENLQMLPESEDEESYDTES 227

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  153 bits (390), Expect = 2e-42
 Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 14/184 (7%)

Query: 547 TLLHWAAINNR----IEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG 602
           + LH A I+      +E+++      A ++      Q TPLH A      +    L+  G
Sbjct: 10  SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ-TPLHLAVITNQPEIAEALLGAG 68

Query: 603 ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN------VNLQDRNGMTALMWSAYKV 656
            DP L D  G+T +H A + G    V  L            +   + NG T L  ++   
Sbjct: 69  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128

Query: 657 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLT 715
             L    LL++ GA    Q+  +G  ALH A+    +  +   L+   + +     QG +
Sbjct: 129 -YLGIVELLVSLGADVNAQEPCNGRTALHLAVD-LQNPDLVSLLLKCGADVNRVTYQGYS 186

Query: 716 PFML 719
           P+ L
Sbjct: 187 PYQL 190

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  134 bits (341), Expect = 8e-36
 Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 10/165 (6%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           +      A ++      Q TPLH A      +    L+  G DP L D  G+T +H A +
Sbjct: 29  RQVKGDLAFLNFQNNLQQ-TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE 87

Query: 62  FGHTRIVAYLVAKGIN------VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 115
            G    V  L            +   + NG T L  ++     L    LL++ GA    Q
Sbjct: 88  QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG-YLGIVELLVSLGADVNAQ 146

Query: 116 DKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
           +  +G  ALH A+    +  +   L+   + +     QG +P+ L
Sbjct: 147 EPCNGRTALHLAVD-LQNPDLVSLLLKCGADVNRVTYQGYSPYQL 190

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  123 bits (312), Expect = 6e-32
 Identities = 44/170 (25%), Positives = 61/170 (35%), Gaps = 12/170 (7%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM------DSEGSTC 55
           +  +  G   +        TPLH A  QG L SV +L Q    P L       +  G TC
Sbjct: 62  EALLGAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120

Query: 56  IHQAAQFGHTRIVAYLVAKGINVNLQDR-NGMTALMWSAYKVFSLDPTRLLITFGASTTI 114
           +H A+  G+  IV  LV+ G +VN Q+  NG TAL  +     + D   LL+  GA    
Sbjct: 121 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ-NPDLVSLLLKCGADVNR 179

Query: 115 QDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 163
                G          +    I   L   T        +         E+
Sbjct: 180 VTY-QGYSPYQLTWG-RPSTRIQQQLGQLTLENLQMLPESEDEESYDTES 227

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  106 bits (267), Expect = 5e-26
 Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 12/132 (9%)

Query: 21  TPLHWATRQGH----LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI 76
           + LH A         ++ +  +    A     ++   T +H A       I   L+  G 
Sbjct: 10  SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC 69

Query: 77  NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI-----HGNVALHWAIYAK 131
           +  L+D  G T L  +  +   L    +L     +  +   +     +G+  LH A    
Sbjct: 70  DPELRDFRGNTPLHLACEQG-CLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI-H 127

Query: 132 NHVAIT-TLVSH 142
            ++ I   LVS 
Sbjct: 128 GYLGIVELLVSL 139

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 95.7 bits (239), Expect = 3e-22
 Identities = 21/93 (22%), Positives = 33/93 (35%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           ++  +S GA V+A       T LH A    + D V LL++ GAD   +  +G +      
Sbjct: 133 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW 192

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 93
               TRI   L    +              +  
Sbjct: 193 GRPSTRIQQQLGQLTLENLQMLPESEDEESYDT 225

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 91.8 bits (229), Expect = 6e-21
 Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 2/98 (2%)

Query: 532 VEAGQDVNEPDSET-VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
           V  G DVN  +     T LH A      +++   +  GA V+ +      +P      + 
Sbjct: 137 VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY-SPYQLTWGRP 195

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 628
                  L Q   +   M  E         +   T   
Sbjct: 196 STRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 82.2 bits (204), Expect = 1e-17
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 14/119 (11%)

Query: 49  DSEGSTCIHQAAQFGHTR----IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRL 104
             +G + +H A           ++  +      +N Q+    T L  +       +    
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITN-QPEIAEA 63

Query: 105 LITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH------TSSLEIPNAQGLTP 156
           L+  G    ++D   GN  LH A   +  +A    L          S L+  N  G T 
Sbjct: 64  LLGAGCDPELRDF-RGNTPLHLACE-QGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 82.2 bits (204), Expect = 1e-17
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 14/119 (11%)

Query: 609 DSEGSTCIHQAAQFGHTR----IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRL 664
             +G + +H A           ++  +      +N Q+    T L  +       +    
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITN-QPEIAEA 63

Query: 665 LITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH------TSSLEIPNAQGLTP 716
           L+  G    ++D   GN  LH A   +  +A    L          S L+  N  G T 
Sbjct: 64  LLGAGCDPELRDF-RGNTPLHLACE-QGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 63.3 bits (155), Expect = 3e-11
 Identities = 9/67 (13%), Positives = 16/67 (23%), Gaps = 1/67 (1%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
              +  GA V+ +      +P      +        L Q   +   M  E         +
Sbjct: 168 SLLLKCGADVNRVTYQGY-SPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE 226

Query: 62  FGHTRIV 68
              T   
Sbjct: 227 SEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 6/83 (7%)

Query: 81  QDRNGMTALMWSAY---KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT 137
              +G + L  +     K  +++  R +    A    Q+       LH A+   N   I 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-LQQTPLHLAVI-TNQPEIA 61

Query: 138 -TLVSHTSSLEIPNAQGLTPFML 159
             L+      E+ + +G TP  L
Sbjct: 62  EALLGAGCDPELRDFRGNTPLHL 84

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 6/83 (7%)

Query: 641 QDRNGMTALMWSAY---KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT 697
              +G + L  +     K  +++  R +    A    Q+       LH A+   N   I 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-LQQTPLHLAVI-TNQPEIA 61

Query: 698 -TLVSHTSSLEIPNAQGLTPFML 719
             L+      E+ + +G TP  L
Sbjct: 62  EALLGAGCDPELRDFRGNTPLHL 84

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  154 bits (392), Expect = 1e-42
 Identities = 49/216 (22%), Positives = 75/216 (34%), Gaps = 19/216 (8%)

Query: 541 PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQ 600
           P+      L      N  +     I+ G  V      L    L  ++ +G  D V  +I 
Sbjct: 1   PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 601 HGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLD 660
              DP+L + EG T +H A   GHT IV +LV  G+NVN  D +G T L  +A    ++ 
Sbjct: 59  EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC-NNVQ 117

Query: 661 PTRLLITFGASTTIQDK--IHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTPF 717
             + L+  GA+        +         +  + +   +  L      + I N   +   
Sbjct: 118 VCKFLVESGAAVFAMTYSDMQTAADKCEEME-EGYTQCSQFLYGVQEKMGIMNKGVIYA- 175

Query: 718 MLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHR 753
                      L         EL         IIHR
Sbjct: 176 -----------LWDYEPQNDDELPMKEGDCMTIIHR 200

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  141 bits (359), Expect = 3e-38
 Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 9/160 (5%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           +    D + P+ E +T LH A      EI+K+ +  G  V+A   D   TPLH A    +
Sbjct: 57  IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW-TPLHCAASCNN 115

Query: 592 LDSVVLLIQHGADP---TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA 648
           +     L++ GA     T  D + +    +  + G+T+   +L      + + ++  + A
Sbjct: 116 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYA 175

Query: 649 LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN-VALHWA 687
           L     +    +   L +  G   TI  +   + +   WA
Sbjct: 176 LWDYEPQ----NDDELPMKEGDCMTIIHREDEDEIEWWWA 211

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  130 bits (330), Expect = 3e-34
 Identities = 46/195 (23%), Positives = 70/195 (35%), Gaps = 19/195 (9%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
              I+ G  V      L    L  ++ +G  D V  +I    DP+L + EG T +H A  
Sbjct: 22  SERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC 79

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK--IH 119
            GHT IV +LV  G+NVN  D +G T L  +A    ++   + L+  GA+        + 
Sbjct: 80  AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC-NNVQVCKFLVESGAAVFAMTYSDMQ 138

Query: 120 GNVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKIT 178
                   +  + +   +  L      + I N   +              L         
Sbjct: 139 TAADKCEEME-EGYTQCSQFLYGVQEKMGIMNKGVIYA------------LWDYEPQNDD 185

Query: 179 ELKDHYNTQQNIIHR 193
           EL         IIHR
Sbjct: 186 ELPMKEGDCMTIIHR 200

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  115 bits (290), Expect = 4e-29
 Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 5/123 (4%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
             L    R     +    I HG      +      +  ++  G   +V  ++ +  + +L
Sbjct: 7   VSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL 65

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 139
            +  G+TAL  +       +  + L+ FG +    D   G   LH A    N+V +   L
Sbjct: 66  PNDEGITALHNAVCA-GHTEIVKFLVQFGVNVNAADS-DGWTPLHCAAS-CNNVQVCKFL 122

Query: 140 VSH 142
           V  
Sbjct: 123 VES 125

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  109 bits (275), Expect = 5e-27
 Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 9/131 (6%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADP---TLMDSEGSTCIH 57
           +K+ +  G  V+A   D   TPLH A    ++     L++ GA     T  D + +    
Sbjct: 86  VKFLVQFGVNVNAADSDGW-TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKC 144

Query: 58  QAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
           +  + G+T+   +L      + + ++  + AL     +    +   L +  G   TI  +
Sbjct: 145 EEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQ----NDDELPMKEGDCMTIIHR 200

Query: 118 IHGN-VALHWA 127
              + +   WA
Sbjct: 201 EDEDEIEWWWA 211

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  105 bits (265), Expect = 1e-25
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 3/124 (2%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIG--GDLQATPLHWATRQ 589
           V+ G +VN  DS+  T LH AA  N +++ K+ +  GA V A+       A        +
Sbjct: 90  VQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEE 149

Query: 590 GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
           G+      L        +M+      +          +        + +  ++       
Sbjct: 150 GYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL-PMKEGDCMTIIHREDEDEIEW 208

Query: 650 MWSA 653
            W+ 
Sbjct: 209 WWAR 212

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 79.6 bits (197), Expect = 1e-16
 Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 5/112 (4%)

Query: 49  DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 108
           +  G   +    +    +  +  +A G+ V       +  L+ S+ +    D  + +I  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEG-EFDLVQRIIYE 59

Query: 109 GASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
               ++ +   G  ALH A+    H  I   LV    ++   ++ G TP   
Sbjct: 60  VDDPSLPND-EGITALHNAVC-AGHTEIVKFLVQFGVNVNAADSDGWTPLHC 109

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  158 bits (401), Expect = 2e-42
 Identities = 47/181 (25%), Positives = 65/181 (35%), Gaps = 6/181 (3%)

Query: 530 QFVEAGQDVNEPDSETVTLLHWAAI-NNRIEIMKYFISQGAIVDAIGGDLQATPLHWATR 588
              +               L  AA   N  ++M           A  G    TPLH A  
Sbjct: 9   DLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKS-TPLHLAAG 67

Query: 589 QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA 648
              +  V LL+QHGAD    D  G   +H A  +GH  +   L+  G  VN  D    T 
Sbjct: 68  YNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTP 127

Query: 649 LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSHTSSLE 707
           L  +A K   ++   LL++ GA  T+ +  HG  A+  A          T      S L+
Sbjct: 128 LHEAASK-NRVEVCSLLLSHGADPTLVNC-HGKSAVDMAPT-PELRERLTYEFKGHSLLQ 184

Query: 708 I 708
            
Sbjct: 185 A 185

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  136 bits (346), Expect = 3e-35
 Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 15/166 (9%)

Query: 530 QFVEAGQDVNEPDSETVTLLHWAAIN---NRIEIMKYFISQGAIVDAIGGDLQATPLHWA 586
           + +       +      T LH A  +    R ++ +  + +GA V+    D   TPLH A
Sbjct: 196 KTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFM-TPLHVA 254

Query: 587 TRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGM 646
             + H D + +L +HGA    +DS G T +H+AA  GH +    L++ G + ++    G 
Sbjct: 255 AERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGF 314

Query: 647 TALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN 692
           TA       V      + +++        D    +  L  A  +K 
Sbjct: 315 TAAQMGNEAV------QQILSESTPMRTSDV---DYRLLEA--SKA 349

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  136 bits (344), Expect = 5e-35
 Identities = 43/149 (28%), Positives = 58/149 (38%), Gaps = 5/149 (3%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           M           A  G    TPLH A     +  V LL+QHGAD    D  G   +H A 
Sbjct: 41  MALLTPLNVNCHASDGRKS-TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC 99

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
            +GH  +   L+  G  VN  D    T L  +A K   ++   LL++ GA  T+ +  HG
Sbjct: 100 SYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASK-NRVEVCSLLLSHGADPTLVNC-HG 157

Query: 121 NVALHWAIYAKNHVAITT-LVSHTSSLEI 148
             A+  A          T      S L+ 
Sbjct: 158 KSAVDMAPT-PELRERLTYEFKGHSLLQA 185

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  131 bits (333), Expect = 2e-33
 Identities = 43/197 (21%), Positives = 68/197 (34%), Gaps = 20/197 (10%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           +  G D    +    + +  A      E + Y     +             L  A R+  
Sbjct: 144 LSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS-------------LLQAAREAD 190

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR---IVAYLVAKGINVNLQDRNGMTA 648
           L  V   +              T +H A    H +   +   L+ KG NVN ++++ MT 
Sbjct: 191 LAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTP 250

Query: 649 LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLE 707
           L  +A +    D   +L   GA     D   G  ALH A     H+     L+S+ S   
Sbjct: 251 LHVAAER-AHNDVMEVLHKHGAKMNALDS-LGQTALHRAAL-AGHLQTCRLLLSYGSDPS 307

Query: 708 IPNAQGLTPFMLLEENI 724
           I + QG T   +  E +
Sbjct: 308 IISLQGFTAAQMGNEAV 324

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  130 bits (330), Expect = 4e-33
 Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 6/163 (3%)

Query: 559 EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIH 617
           +         A     G + +   L  A R G+ + ++ LL     +    D   ST +H
Sbjct: 5   KSALDLADPSAKAVLTG-EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLH 63

Query: 618 QAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
            AA +   RIV  L+  G +V+ +D+ G+  L  +       + T LL+  GA     D 
Sbjct: 64  LAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYG-HYEVTELLLKHGACVNAMDL 122

Query: 678 IHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
                 LH A   KN V +   L+SH +   + N  G +   +
Sbjct: 123 -WQFTPLHEAAS-KNRVEVCSLLLSHGADPTLVNCHGKSAVDM 163

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  129 bits (326), Expect = 1e-32
 Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 6/158 (3%)

Query: 4   FISQGAIVDAIGGDLQATPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIHQAAQF 62
                A     G + +   L  A R G+ + ++ LL     +    D   ST +H AA +
Sbjct: 10  LADPSAKAVLTG-EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGY 68

Query: 63  GHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNV 122
              RIV  L+  G +V+ +D+ G+  L  +       + T LL+  GA     D      
Sbjct: 69  NRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYG-HYEVTELLLKHGACVNAMDL-WQFT 126

Query: 123 ALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
            LH A   KN V +   L+SH +   + N  G +   +
Sbjct: 127 PLHEAAS-KNRVEVCSLLLSHGADPTLVNCHGKSAVDM 163

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  116 bits (292), Expect = 3e-28
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 12/132 (9%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
            +  + +GA V+    D   TPLH A  + H D + +L +HGA    +DS G T +H+AA
Sbjct: 230 AELLLRKGANVNEKNKDFM-TPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAA 288

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
             GH +    L++ G + ++    G TA       V      + +++        D    
Sbjct: 289 LAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAV------QQILSESTPMRTSDV--- 339

Query: 121 NVALHWAIYAKN 132
           +  L  A  +K 
Sbjct: 340 DYRLLEA--SKA 349

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  114 bits (289), Expect = 7e-28
 Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 11/145 (7%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS--VV-LLIQHGADPTLMDSEGSTCIH 57
           +K  ++   I        + T LH A    H     V  LL++ GA+    + +  T +H
Sbjct: 194 VKKTLALEIINFKQPQSHE-TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLH 252

Query: 58  QAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 117
            AA+  H  ++  L   G  +N  D  G TAL  +A     L   RLL+++G+  +I   
Sbjct: 253 VAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALA-GHLQTCRLLLSYGSDPSIISL 311

Query: 118 IHGNVALHWAIYAKNHVAITTLVSH 142
             G  A         + A+  ++S 
Sbjct: 312 -QGFTAAQMG-----NEAVQQILSE 330

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  111 bits (280), Expect = 1e-26
 Identities = 39/189 (20%), Positives = 62/189 (32%), Gaps = 29/189 (15%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGH---------------------LDSVVLLI 39
               +S GA    +    + + +  A                          L  V   +
Sbjct: 140 CSLLLSHGADPTLVNCHGK-SAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTL 198

Query: 40  QHGADPTLMDSEGSTCIHQAAQFGHTR---IVAYLVAKGINVNLQDRNGMTALMWSAYKV 96
                         T +H A    H +   +   L+ KG NVN ++++ MT L  +A + 
Sbjct: 199 ALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAER- 257

Query: 97  FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLT 155
              D   +L   GA     D   G  ALH A     H+     L+S+ S   I + QG T
Sbjct: 258 AHNDVMEVLHKHGAKMNALDS-LGQTALHRAAL-AGHLQTCRLLLSYGSDPSIISLQGFT 315

Query: 156 PFMLLEENI 164
              +  E +
Sbjct: 316 AAQMGNEAV 324

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 95.3 bits (238), Expect = 3e-21
 Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 5/127 (3%)

Query: 35  VVLLIQHGADPTLMDSEGSTCIHQAAQFGH-TRIVAYLVAKGINVNLQDRNGMTALMWSA 93
            + L    A   L        + +AA+ G+  +++A L    +N +  D    T L  +A
Sbjct: 7   ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA 66

Query: 94  YKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQ 152
                +   +LL+  GA    +DK  G V LH A     H  +T  L+ H + +   +  
Sbjct: 67  GY-NRVRIVQLLLQHGADVHAKDK-GGLVPLHNACS-YGHYEVTELLLKHGACVNAMDLW 123

Query: 153 GLTPFML 159
             TP   
Sbjct: 124 QFTPLHE 130

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 60.6 bits (148), Expect = 7e-10
 Identities = 20/101 (19%), Positives = 30/101 (29%), Gaps = 5/101 (4%)

Query: 60  AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 119
            +FG +     L        L        L+ +A          LL     +    D   
Sbjct: 1   GEFGKS--ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDG-R 57

Query: 120 GNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
            +  LH A    N V I   L+ H + +   +  GL P   
Sbjct: 58  KSTPLHLAAG-YNRVRIVQLLLQHGADVHAKDKGGLVPLHN 97

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.9 bits (110), Expect = 4e-05
 Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 8/59 (13%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
           +  G D +    +  T           E ++  +S+   +     D     L  A++ G
Sbjct: 300 LSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDVD---YRLLEASKAG 350

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  154 bits (392), Expect = 2e-42
 Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 6/173 (3%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI-VDAIGGDLQATPLHWATRQG 590
           +EA  D N  D+   T LH A   +   + +  I   A  +DA   D   TPL  A R  
Sbjct: 77  LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT-TPLILAARLA 135

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
               +  LI   AD   +D  G + +H AA   +      L+  G N ++Q+    T L 
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195

Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 702
            +A +  S +  ++L+   A+  I D     +    A   + H  I   L   
Sbjct: 196 LAARE-GSYETAKVLLDHFANRDITDH-MDRLPRDIAQE-RMHHDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  151 bits (385), Expect = 2e-41
 Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 18/198 (9%)

Query: 537 DVNEPDSETVTLLHWAAIN-------------NRIEIMKYFISQGAIVDAIGGDLQATPL 583
           DVN    +  T L  A+ +             +   ++  FI QGA +         T L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 584 HWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQD 642
           H A R    D+   L++  AD  + D+ G T +H A       +   L+     +++ + 
Sbjct: 62  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121

Query: 643 RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVS 701
            +G T L+ +A           LI   A     D   G  ALHWA    N+V     L+ 
Sbjct: 122 HDGTTPLILAARL-AVEGMLEDLINSHADVNAVDD-LGKSALHWAAA-VNNVDAAVVLLK 178

Query: 702 HTSSLEIPNAQGLTPFML 719
           + ++ ++ N +  TP  L
Sbjct: 179 NGANKDMQNNREETPLFL 196

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  135 bits (343), Expect = 6e-36
 Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 2/136 (1%)

Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
             D++    +  T L  AA      +++  I+  A V+A+    + + LHWA    ++D+
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK-SALHWAAAVNNVDA 172

Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 654
            V+L+++GA+  + ++   T +  AA+ G       L+    N ++ D         +  
Sbjct: 173 AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 232

Query: 655 KVFSLDPTRLLITFGA 670
           +    D  RLL     
Sbjct: 233 R-MHHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  131 bits (332), Expect = 2e-34
 Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 5/161 (3%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +  FI QGA +         T LH A R    D+   L++  AD  + D+ G T +H A 
Sbjct: 39  ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98

Query: 61  QFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 119
                 +   L+     +++ +  +G T L+ +A           LI   A     D   
Sbjct: 99  SADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-AVEGMLEDLINSHADVNAVDD-L 156

Query: 120 GNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
           G  ALHWA    N+V     L+ + ++ ++ N +  TP  L
Sbjct: 157 GKSALHWAAA-VNNVDAAVVLLKNGANKDMQNNREETPLFL 196

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  122 bits (310), Expect = 2e-31
 Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 6/143 (4%)

Query: 2   KYFISQGAI-VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +  I   A  +DA   D   TPL  A R      +  LI   AD   +D  G + +H AA
Sbjct: 107 QILIRNRATDLDARMHDGT-TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA 165

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
              +      L+  G N ++Q+    T L  +A +  S +  ++L+   A+  I D    
Sbjct: 166 AVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE-GSYETAKVLLDHFANRDITDH-MD 223

Query: 121 NVALHWAIYAKNHVAITT-LVSH 142
            +    A   + H  I   L   
Sbjct: 224 RLPRDIAQE-RMHHDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  112 bits (284), Expect = 5e-28
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 1/108 (0%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           + +  DVN  D    + LHWAA  N ++     +  GA  D      + TPL  A R+G 
Sbjct: 144 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE-TPLFLAAREGS 202

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 639
            ++  +L+ H A+  + D         A +  H  IV  L  +  + +
Sbjct: 203 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  107 bits (271), Expect = 3e-26
 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           +  I+  A V+A+    + + LHWA    ++D+ V+L+++GA+  + ++   T +  AA+
Sbjct: 141 EDLINSHADVNAVDDLGK-SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
            G       L+    N ++ D         +  +    D  RLL     
Sbjct: 200 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQER-MHHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 99.8 bits (250), Expect = 1e-23
 Identities = 29/155 (18%), Positives = 51/155 (32%), Gaps = 19/155 (12%)

Query: 21  TPLHWATRQG-------------HLDSVVLLIQHGADPT-LMDSEGSTCIHQAAQFGHTR 66
           TPL  A+  G                 +   I  GA      D  G T +H AA++  + 
Sbjct: 12  TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSD 71

Query: 67  IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAST-TIQDKIHGNVALH 125
               L+    + N+QD  G T L  +     +    ++LI   A+    +    G   L 
Sbjct: 72  AAKRLLEASADANIQDNMGRTPLHAAVSAD-AQGVFQILIRNRATDLDARMH-DGTTPLI 129

Query: 126 WAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
            A        +   L++  + +   +  G +    
Sbjct: 130 LAAR-LAVEGMLEDLINSHADVNAVDDLGKSALHW 163

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 80.2 bits (199), Expect = 8e-17
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
              +  GA  D      + TPL  A R+G  ++  +L+ H A+  + D         A +
Sbjct: 174 VVLLKNGANKDMQNNREE-TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 232

Query: 62  FGHTRIVAYLVAKGINVN 79
             H  IV  L  +  + +
Sbjct: 233 RMHHDIVRLLDLEHHHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 67.1 bits (165), Expect = 2e-12
 Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 19/127 (14%)

Query: 49  DSEGSTCIHQAAQFG-------------HTRIVAYLVAKGINV-NLQDRNGMTALMWSAY 94
             +G T +  A+  G                +++  + +G ++ N  DR G TAL  +A 
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66

Query: 95  KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH-TSSLEIPNAQ 152
                D  + L+   A   IQD   G   LH A+   +   +   L+ +  + L+     
Sbjct: 67  YS-RSDAAKRLLEASADANIQDN-MGRTPLHAAVS-ADAQGVFQILIRNRATDLDARMHD 123

Query: 153 GLTPFML 159
           G TP +L
Sbjct: 124 GTTPLIL 130

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 53.2 bits (129), Expect = 8e-08
 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 14/97 (14%)

Query: 76  INVNLQDRNGMTALMWSAYKVF------------SLDPTRLLITFGASTTIQDKIHGNVA 123
           ++VN++  +G T LM ++                +       I  GAS   Q    G  A
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60

Query: 124 LHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
           LH A    +       L+  ++   I +  G TP   
Sbjct: 61  LHLAAR-YSRSDAAKRLLEASADANIQDNMGRTPLHA 96

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 53.2 bits (129), Expect = 8e-08
 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 14/97 (14%)

Query: 636 INVNLQDRNGMTALMWSAYKVF------------SLDPTRLLITFGASTTIQDKIHGNVA 683
           ++VN++  +G T LM ++                +       I  GAS   Q    G  A
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60

Query: 684 LHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
           LH A    +       L+  ++   I +  G TP   
Sbjct: 61  LHLAAR-YSRSDAAKRLLEASADANIQDNMGRTPLHA 96

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  151 bits (385), Expect = 3e-42
 Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 5/166 (3%)

Query: 538 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL 597
            N  DS   T L  A +      +   +     ++    +   T L WA +   L     
Sbjct: 28  RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGS-TALIWAVKNNRLGIAEK 86

Query: 598 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 657
           L+  G++    D  G T +  +  FG++ +  +L+  G NVN ++  G T L+ ++    
Sbjct: 87  LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG- 145

Query: 658 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 702
             +  + L+  GA  + +D   G  A   A        +       
Sbjct: 146 RSEIVKKLLELGADISARDL-TGLTAEASARI-FGRQEVIKIFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  136 bits (345), Expect = 7e-37
 Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 2/136 (1%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            VE    + + D E  T L WA  NNR+ I +  +S+G+ V+      + TPL W+   G
Sbjct: 54  LVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGK-TPLMWSIIFG 112

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
           + +    L++HGA+    + EG T +  A+++G + IV  L+  G +++ +D  G+TA  
Sbjct: 113 YSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEA 172

Query: 651 WSAYKVFSLDPTRLLI 666
            +       +  ++  
Sbjct: 173 SARIF-GRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  125 bits (318), Expect = 3e-33
 Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 5/142 (3%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
              +     ++    +   T L WA +   L     L+  G++    D  G T +  +  
Sbjct: 52  DKLVENFDKLEDKDIEGS-TALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSII 110

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
           FG++ +  +L+  G NVN ++  G T L+ ++      +  + L+  GA  + +D   G 
Sbjct: 111 FGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG-RSEIVKKLLELGADISARDL-TGL 168

Query: 122 VALHWAIYAKNHVAITT-LVSH 142
            A   A        +       
Sbjct: 169 TAEASARI-FGRQEVIKIFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  123 bits (311), Expect = 2e-32
 Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 11/182 (6%)

Query: 539 NEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLL 598
           +  D     +       +  + + +  +     D+       TPL  A   G  +++  L
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRNYR---DSYN----RTPLMVACMLGMENAIDKL 54

Query: 599 IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS 658
           +++       D EGST +  A +     I   L++KG NVN +D +G T LMWS      
Sbjct: 55  VENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFG-Y 113

Query: 659 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPF 717
            + +  L+  GA+   ++   G   L  A        I   L+   + +   +  GLT  
Sbjct: 114 SEMSYFLLEHGANVNDRNL-EGETPLIVASK-YGRSEIVKKLLELGADISARDLTGLTAE 171

Query: 718 ML 719
             
Sbjct: 172 AS 173

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  116 bits (294), Expect = 5e-30
 Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 4/140 (2%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
           TPL  A   G  +++  L+++       D EGST +  A +     I   L++KG NVN 
Sbjct: 37  TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 139
           +D +G T LMWS       + +  L+  GA+   ++   G   L  A        I   L
Sbjct: 97  KDFSGKTPLMWSIIFG-YSEMSYFLLEHGANVNDRNL-EGETPLIVASK-YGRSEIVKKL 153

Query: 140 VSHTSSLEIPNAQGLTPFML 159
           +   + +   +  GLT    
Sbjct: 154 LELGADISARDLTGLTAEAS 173

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 96.3 bits (241), Expect = 7e-23
 Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 14/153 (9%)

Query: 8   GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRI 67
           G+ +D    + +         +    ++  L  +       DS   T +  A   G    
Sbjct: 1   GSHMD---KNGE-IVEKIKDEKSINQNLDFLRNY------RDSYNRTPLMVACMLGMENA 50

Query: 68  VAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA 127
           +  LV     +  +D  G TAL+W+      L     L++ G++   +D   G   L W+
Sbjct: 51  IDKLVENFDKLEDKDIEGSTALIWAVKN-NRLGIAEKLLSKGSNVNTKDF-SGKTPLMWS 108

Query: 128 IYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
           I    +  ++  L+ H +++   N +G TP ++
Sbjct: 109 II-FGYSEMSYFLLEHGANVNDRNLEGETPLIV 140

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 75.1 bits (186), Expect = 1e-15
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           +E G +VN+ + E  T L  A+   R EI+K  +  GA + A       T    A   G 
Sbjct: 121 LEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGL-TAEASARIFGR 179

Query: 592 LDSVVLLIQHGA 603
            + + +  +   
Sbjct: 180 QEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 43.9 bits (105), Expect = 6e-05
 Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 1/42 (2%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA 43
           K  +  GA + A       T    A   G  + + +  +   
Sbjct: 151 KKLLELGADISARDLTGL-TAEASARIFGRQEVIKIFTEVRR 191

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  150 bits (382), Expect = 3e-42
 Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 12/171 (7%)

Query: 533 EAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL 592
             G D+ +        L  AA   R + ++  ++ GA V+A       TPLH A   GHL
Sbjct: 9   HHGSDLGKK-------LLEAARAGRDDEVRILMANGADVNAEDAS-GWTPLHLAAFNGHL 60

Query: 593 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 652
           + V +L+++GAD   +D  G T +  AA FGH  IV  L+  G +VN  D  G T L  +
Sbjct: 61  EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA 120

Query: 653 AYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
           A     L+   +L+  GA    QDK  G  A   +I    +  +   L   
Sbjct: 121 AMFG-HLEIVEVLLKNGADVNAQDK-FGKTAFDISID-NGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  137 bits (347), Expect = 2e-37
 Identities = 53/135 (39%), Positives = 72/135 (53%), Gaps = 2/135 (1%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           +  G DVN  D+   T LH AA N  +EI++  +  GA V+A+      TPL  A   GH
Sbjct: 34  MANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGM-TPLRLAALFGH 92

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
           L+ V +L+++GAD    D EG T +H AA FGH  IV  L+  G +VN QD+ G TA   
Sbjct: 93  LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152

Query: 652 SAYKVFSLDPTRLLI 666
           S     + D   +L 
Sbjct: 153 SIDN-GNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  128 bits (325), Expect = 2e-34
 Identities = 47/142 (33%), Positives = 67/142 (47%), Gaps = 5/142 (3%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           +  ++ GA V+A       TPLH A   GHL+ V +L+++GAD   +D  G T +  AA 
Sbjct: 31  RILMANGADVNAEDAS-GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL 89

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
           FGH  IV  L+  G +VN  D  G T L  +A     L+   +L+  GA    QDK  G 
Sbjct: 90  FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG-HLEIVEVLLKNGADVNAQDK-FGK 147

Query: 122 VALHWAIYAKNHVAIT-TLVSH 142
            A   +I    +  +   L   
Sbjct: 148 TAFDISID-NGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  119 bits (301), Expect = 3e-31
 Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 4/154 (2%)

Query: 7   QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR 66
           +G+      G      L  A R G  D V +L+ +GAD    D+ G T +H AA  GH  
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61

Query: 67  IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 126
           IV  L+  G +VN  D  GMT L  +A     L+   +L+  GA     D   G+  LH 
Sbjct: 62  IVEVLLKNGADVNAVDHAGMTPLRLAALFG-HLEIVEVLLKNGADVNANDM-EGHTPLHL 119

Query: 127 AIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
           A     H+ I   L+ + + +   +  G T F +
Sbjct: 120 AAM-FGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  119 bits (301), Expect = 3e-31
 Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 4/154 (2%)

Query: 567 QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR 626
           +G+      G      L  A R G  D V +L+ +GAD    D+ G T +H AA  GH  
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61

Query: 627 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 686
           IV  L+  G +VN  D  GMT L  +A     L+   +L+  GA     D   G+  LH 
Sbjct: 62  IVEVLLKNGADVNAVDHAGMTPLRLAALFG-HLEIVEVLLKNGADVNANDM-EGHTPLHL 119

Query: 687 AIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
           A     H+ I   L+ + + +   +  G T F +
Sbjct: 120 AAM-FGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  106 bits (267), Expect = 1e-26
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 2/106 (1%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           ++  +  GA V+A+      TPL  A   GHL+ V +L+++GAD    D EG T +H AA
Sbjct: 63  VEVLLKNGADVNAVDHAGM-TPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA 121

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 106
            FGH  IV  L+  G +VN QD+ G TA   S     + D   +L 
Sbjct: 122 MFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDN-GNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 41.2 bits (98), Expect = 4e-04
 Identities = 7/35 (20%), Positives = 13/35 (37%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFIS 566
           ++ G DVN  D    T    +  N   ++ +    
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  154 bits (391), Expect = 9e-42
 Identities = 55/222 (24%), Positives = 91/222 (40%), Gaps = 32/222 (14%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            +E G D+N  + + +T LH A I++ ++++K+ +  GA ++    +    PLH A   G
Sbjct: 59  LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGW-IPLHAAASCG 117

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK---------------- 634
           +LD    LI  GA    ++SEG T +  A +     ++   V +                
Sbjct: 118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM 177

Query: 635 -----------GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVA 683
                       IN     ++G TAL  +A K    +  +LLI       I+D   G   
Sbjct: 178 LRDARQWLNSGHINDVRHAKSGGTALHVAAAKG-YTEVLKLLIQARYDVNIKDY-DGWTP 235

Query: 684 LHWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTPFMLLEENI 724
           LH A +          LV +   +E  N  G T F + +E+I
Sbjct: 236 LHAAAH-WGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI 276

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  143 bits (362), Expect = 6e-38
 Identities = 36/182 (19%), Positives = 63/182 (34%), Gaps = 8/182 (4%)

Query: 542 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH 601
           D++                ++  + +                  A   G  + V+ L++ 
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKV--KFDDGAVFLAACSSGDTEEVLRLLER 62

Query: 602 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 661
           GAD    + +G T +HQA    +  +V +LV  G N+N  D  G   L  +A     LD 
Sbjct: 63  GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC-GYLDI 121

Query: 662 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVS-HTSSLEIPNAQGLTPFML 719
              LI+ GA     +   G+  L  A   +    +    V+     +E    +     ML
Sbjct: 122 AEYLISQGAHVGAVNS-EGDTPLDIAEE-EAMEELLQNEVNRQGVDIEAARKEEERI-ML 178

Query: 720 LE 721
            +
Sbjct: 179 RD 180

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  141 bits (357), Expect = 3e-37
 Identities = 45/213 (21%), Positives = 78/213 (36%), Gaps = 31/213 (14%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            V   +       +    L   + +   E +   + +GA ++    D   T LH A    
Sbjct: 27  PVVKRKKTKVKFDDGAVFLAACS-SGDTEEVLRLLERGADINYANVDGL-TALHQACIDD 84

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
           ++D V  L+++GA+    D+EG   +H AA  G+  I  YL+++G +V   +  G T L 
Sbjct: 85  NVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLD 144

Query: 651 W--------------------------SAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 684
                                         ++   D  + L +   +     K  G  AL
Sbjct: 145 IAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK-SGGTAL 203

Query: 685 HWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTP 716
           H A  AK +  +   L+     + I +  G TP
Sbjct: 204 HVAA-AKGYTEVLKLLIQARYDVNIKDYDGWTP 235

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  123 bits (312), Expect = 3e-31
 Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 8/163 (4%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           ++  + +                  A   G  + V+ L++ GAD    + +G T +HQA 
Sbjct: 24  LEPPVVKRKKTKV--KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQAC 81

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
              +  +V +LV  G N+N  D  G   L  +A     LD    LI+ GA     +   G
Sbjct: 82  IDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC-GYLDIAEYLISQGAHVGAVNS-EG 139

Query: 121 NVALHWAIYAKNHVAIT-TLVS-HTSSLEIPNAQGLTPFMLLE 161
           +  L  A   +    +    V+     +E    +     ML +
Sbjct: 140 DTPLDIAEE-EAMEELLQNEVNRQGVDIEAARKEEERI-MLRD 180

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  117 bits (295), Expect = 4e-29
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 9/155 (5%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
              + +GA ++    D   T LH A    ++D V  L+++GA+    D+EG   +H AA 
Sbjct: 57  LRLLERGADINYANVDGL-TALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS 115

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
            G+  I  YL+++G +V   +  G T L  +  +    +  +  +           +   
Sbjct: 116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEA-MEELLQNEVNRQ-------GVDIE 167

Query: 122 VALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 156
            A           A   L S   +       G T 
Sbjct: 168 AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTA 202

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  115 bits (290), Expect = 2e-28
 Identities = 41/166 (24%), Positives = 65/166 (39%), Gaps = 13/166 (7%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLI-QHGADPTLMDSEGSTCIHQA 59
            +Y ISQGA V A+  +   TPL  A  +   + +   + + G D             + 
Sbjct: 122 AEYLISQGAHVGAVNSEGD-TPLDIAEEEAMEELLQNEVNRQGVD-------IEAARKEE 173

Query: 60  AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 119
            +        +L +  IN     ++G TAL  +A K    +  +LLI       I+D   
Sbjct: 174 ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKG-YTEVLKLLIQARYDVNIKDY-D 231

Query: 120 GNVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTPFMLLEENI 164
           G   LH A +          LV +   +E  N  G T F + +E+I
Sbjct: 232 GWTPLHAAAH-WGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI 276

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  112 bits (284), Expect = 1e-27
 Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 9/155 (5%)

Query: 10  IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVA 69
           + DA                G    +   +       +   +G+     A   G T  V 
Sbjct: 3   MADAKQK----RNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAV-FLAACSSGDTEEVL 57

Query: 70  YLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIY 129
            L+ +G ++N  + +G+TAL  +     ++D  + L+  GA+    D   G + LH A  
Sbjct: 58  RLLERGADINYANVDGLTALHQACIDD-NVDMVKFLVENGANINQPDN-EGWIPLHAAAS 115

Query: 130 AKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 163
              ++ I   L+S  + +   N++G TP  + EE 
Sbjct: 116 -CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE 149

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  110 bits (277), Expect = 1e-26
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 1/111 (0%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
                +         T LH AA     E++K  I     V+    D   TPLH A   G 
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGW-TPLHAAAHWGK 244

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 642
            ++  +L+++  D   ++  G T    A +     +      + +  + + 
Sbjct: 245 EEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKR 295

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  103 bits (260), Expect = 2e-24
 Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 9/141 (6%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           +  +++  +      D++        R    D+   L     +       G T +H AA 
Sbjct: 156 QNEVNRQGV------DIE-AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAA 208

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
            G+T ++  L+    +VN++D +G T L  +A+     +  R+L+         +K  G 
Sbjct: 209 KGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW-GKEEACRILVENLCDMEAVNK-VGQ 266

Query: 122 VALHWAIYAKNHVAITTLVSH 142
            A   A               
Sbjct: 267 TAFDVADEDILGYLEELQKKQ 287

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 78.7 bits (195), Expect = 5e-16
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 1/82 (1%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +K  I     V+    D   TPLH A   G  ++  +L+++  D   ++  G T    A 
Sbjct: 215 LKLLIQARYDVNIKDYDGW-TPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273

Query: 61  QFGHTRIVAYLVAKGINVNLQD 82
           +     +      + +  + + 
Sbjct: 274 EDILGYLEELQKKQNLLHSEKR 295

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  149 bits (379), Expect = 4e-41
 Identities = 45/196 (22%), Positives = 76/196 (38%), Gaps = 10/196 (5%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATR 588
                  + + D +    LHW+      EI  + +S+   V+      D   TP H A  
Sbjct: 22  LHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81

Query: 589 QGHLDSVVLLIQH--GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGM 646
            G+L+ V  L       D   + ++G TC+H A       +  +L+  G +V ++D+   
Sbjct: 82  VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQ 141

Query: 647 TALMWSAYKVFSLDPTRLLITFGASTT-IQDKIHGNVALHWAIYAKNHVAIT-TLVS-HT 703
             L  +A    SL    LL   G S    QDK  G   L  A+  + H      LV  + 
Sbjct: 142 IPLHRAASV-GSLKLIELLCGLGKSAVNWQDK-QGWTPLFHALA-EGHGDAAVLLVEKYG 198

Query: 704 SSLEIPNAQGLTPFML 719
           +  ++ + +G     +
Sbjct: 199 AEYDLVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  140 bits (355), Expect = 8e-38
 Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 12/181 (6%)

Query: 547 TLLHWAAINNRI-EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADP 605
             LH A + N   ++ +   S+ +++     D +  PLHW+      +    L+    + 
Sbjct: 4   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGR-IPLHWSVSFQAHEITSFLLSKMENV 62

Query: 606 TLMDS---EGSTCIHQAAQFGHTRIVAYLVAK--GINVNLQDRNGMTALMWSAYKVFSLD 660
            L D     G T  H A   G+  +V  L  +    ++N     G+T L  +  K    +
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK-KWFE 121

Query: 661 PTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH-TSSLEIPNAQGLTPFM 718
            ++ LI  GAS  I+DK    + LH A      + +   L     S++   + QG TP  
Sbjct: 122 VSQFLIENGASVRIKDK-FNQIPLHRAAS-VGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179

Query: 719 L 719
            
Sbjct: 180 H 180

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  139 bits (354), Expect = 1e-37
 Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 13/175 (7%)

Query: 535 GQDVNEPDSET---VTLLHWAAINNRIEIMKYFISQ--GAIVDAIGGDLQATPLHWATRQ 589
            ++VN  D       T  H A     +E++K    +     ++ I      T LH A  +
Sbjct: 59  MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGK 117

Query: 590 GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN-VNLQDRNGMTA 648
              +    LI++GA   + D      +H+AA  G  +++  L   G + VN QD+ G T 
Sbjct: 118 KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177

Query: 649 LMWSAYKVFSLDPTRLLITF-GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 702
           L  +  +    D   LL+   GA   + D   G  A   A+  +        +++
Sbjct: 178 LFHALAE-GHGDAAVLLVEKYGAEYDLVDN-KGAKAEDVALN-EQVKKF--FLNN 227

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  129 bits (326), Expect = 6e-34
 Identities = 36/124 (29%), Positives = 50/124 (40%), Gaps = 3/124 (2%)

Query: 534 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 593
              D+N+  ++ VT LH A      E+ ++ I  GA V       Q  PLH A   G L 
Sbjct: 96  LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQ-IPLHRAASVGSLK 154

Query: 594 SVVLLIQHG-ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMW 651
            + LL   G +     D +G T +  A   GH      LV K G   +L D  G  A   
Sbjct: 155 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214

Query: 652 SAYK 655
           +  +
Sbjct: 215 ALNE 218

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  123 bits (312), Expect = 4e-32
 Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 11/165 (6%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDS---EGSTCIHQ 58
           +   S+ +++     D +  PLHW+      +    L+    +  L D     G T  H 
Sbjct: 20  ELLHSKPSLLLQKDQDGR-IPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHI 78

Query: 59  AAQFGHTRIVAYLVAK--GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 116
           A   G+  +V  L  +    ++N     G+T L  +  K    + ++ LI  GAS  I+D
Sbjct: 79  ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK-KWFEVSQFLIENGASVRIKD 137

Query: 117 KIHGNVALHWAIYAKNHVAIT-TLVSH-TSSLEIPNAQGLTPFML 159
           K    + LH A      + +   L     S++   + QG TP   
Sbjct: 138 K-FNQIPLHRAAS-VGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 180

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  117 bits (297), Expect = 5e-30
 Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 10/166 (6%)

Query: 1   MKYFISQGAIVDA--IGGDLQATPLHWATRQGHLDSVVLLIQH--GADPTLMDSEGSTCI 56
             + +S+   V+      D   TP H A   G+L+ V  L       D   + ++G TC+
Sbjct: 52  TSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL 111

Query: 57  HQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTT-IQ 115
           H A       +  +L+  G +V ++D+     L  +A    SL    LL   G S    Q
Sbjct: 112 HLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV-GSLKLIELLCGLGKSAVNWQ 170

Query: 116 DKIHGNVALHWAIYAKNHVAIT-TLVS-HTSSLEIPNAQGLTPFML 159
           DK  G   L  A+  + H      LV  + +  ++ + +G     +
Sbjct: 171 DK-QGWTPLFHALA-EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  112 bits (284), Expect = 3e-28
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 10/145 (6%)

Query: 2   KYFISQ--GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
           K    +     ++ I      T LH A  +   +    LI++GA   + D      +H+A
Sbjct: 89  KSLYDRPLKPDLNKITNQGV-TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147

Query: 60  AQFGHTRIVAYLVAKGIN-VNLQDRNGMTALMWSAYKVFSLDPTRLLITF-GASTTIQDK 117
           A  G  +++  L   G + VN QD+ G T L  +  +    D   LL+   GA   + D 
Sbjct: 148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE-GHGDAAVLLVEKYGAEYDLVDN 206

Query: 118 IHGNVALHWAIYAKNHVAITTLVSH 142
             G  A   A+  +        +++
Sbjct: 207 -KGAKAEDVALN-EQVKKF--FLNN 227

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  111 bits (281), Expect = 8e-28
 Identities = 32/143 (22%), Positives = 54/143 (37%), Gaps = 10/143 (6%)

Query: 21  TPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
            PLH A  +     V  LL    +     D +G   +H +  F    I ++L++K  NVN
Sbjct: 4   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63

Query: 80  LQ---DRNGMTALMWSAYKVFSLDPTRLLI--TFGASTTIQDKIHGNVALHWAIYAKNHV 134
           L    D +G T    +     +L+  + L                G   LH A+  K   
Sbjct: 64  LDDYPDDSGWTPFHIACSVG-NLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVG-KKWF 120

Query: 135 AIT-TLVSHTSSLEIPNAQGLTP 156
            ++  L+ + +S+ I +     P
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIP 143

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 81.3 bits (202), Expect = 2e-17
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 8/114 (7%)

Query: 52  GSTCIHQAAQFGHTRIVA-YLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
            +  +HQA        V   L +K   +  +D++G   L WS     + + T  L++   
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-QAHEITSFLLSKME 60

Query: 111 STTIQDKI--HGNVALHWAIYAKNHVAIT-TLVSHTSSLEI--PNAQGLTPFML 159
           +  + D     G    H A     ++ +  +L       ++     QG+T   L
Sbjct: 61  NVNLDDYPDDSGWTPFHIACS-VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 81.3 bits (202), Expect = 2e-17
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 8/114 (7%)

Query: 612 GSTCIHQAAQFGHTRIVA-YLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 670
            +  +HQA        V   L +K   +  +D++G   L WS     + + T  L++   
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-QAHEITSFLLSKME 60

Query: 671 STTIQDKI--HGNVALHWAIYAKNHVAIT-TLVSHTSSLEI--PNAQGLTPFML 719
           +  + D     G    H A     ++ +  +L       ++     QG+T   L
Sbjct: 61  NVNLDDYPDDSGWTPFHIACS-VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  147 bits (373), Expect = 8e-41
 Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 8/164 (4%)

Query: 542 DSETVTLLHWAAINNRIEIMKYFISQGAI-VDAIGGDLQ-ATPLHWATRQGHLDSVVLLI 599
             E +  +           ++ ++      ++   GD    +PLHWA R+G    V +LI
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQ--GDDHGFSPLHWACREGRSAVVEMLI 59

Query: 600 QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSL 659
             GA   +M+    T +H AA  GH  IV  L+    ++N  + +G   L ++ +     
Sbjct: 60  MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFW-GQD 118

Query: 660 DPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
                L+  GA  +I +K +G + +  A        +       
Sbjct: 119 QVAEDLVANGALVSICNK-YGEMPVDKAKA-PLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  142 bits (362), Expect = 3e-39
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 6/138 (4%)

Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGHL 592
             D+N+ D    + LHWA    R  +++  I +GA ++    G D   TPLH A   GH 
Sbjct: 29  ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD---TPLHLAASHGHR 85

Query: 593 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 652
           D V  L+Q+ AD   ++  G+  +H A  +G  ++   LVA G  V++ ++ G   +  +
Sbjct: 86  DIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145

Query: 653 AYKVFSLDPTRLLITFGA 670
              +            G 
Sbjct: 146 KAPL-RELLRERAEKMGQ 162

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  125 bits (316), Expect = 4e-33
 Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 8/144 (5%)

Query: 2   KYFISQGAI-VDAIGGDLQ-ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
           + ++      ++   GD    +PLHWA R+G    V +LI  GA   +M+    T +H A
Sbjct: 22  RLWLDNTENDLNQ--GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLA 79

Query: 60  AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 119
           A  GH  IV  L+    ++N  + +G   L ++ +          L+  GA  +I +K +
Sbjct: 80  ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFW-GQDQVAEDLVANGALVSICNK-Y 137

Query: 120 GNVALHWAIYAKNHVAIT-TLVSH 142
           G + +  A        +       
Sbjct: 138 GEMPVDKAKA-PLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  117 bits (295), Expect = 3e-30
 Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 5/141 (3%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGA-DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
             +    R+G+  +V L + +   D    D  G + +H A + G + +V  L+ +G  +N
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66

Query: 80  LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-T 138
           + +R   T L  +A      D  + L+ + A     ++ HGNV LH+A +      +   
Sbjct: 67  VMNRGDDTPLHLAASH-GHRDIVQKLLQYKADINAVNE-HGNVPLHYACF-WGQDQVAED 123

Query: 139 LVSHTSSLEIPNAQGLTPFML 159
           LV++ + + I N  G  P   
Sbjct: 124 LVANGALVSICNKYGEMPVDK 144

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  115 bits (291), Expect = 8e-30
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 1/108 (0%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           +  G  +N  +    T LH AA +   +I++  +   A ++A+       PLH+A   G 
Sbjct: 59  IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN-VPLHYACFWGQ 117

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 639
                 L+ +GA  ++ +  G   + +A       +       G N+N
Sbjct: 118 DQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN 165

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 92.9 bits (232), Expect = 6e-22
 Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 7/95 (7%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           ++   D+N  +      LH+A    + ++ +  ++ GA+V       +  P+  A     
Sbjct: 92  LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGE-MPVDKAKAPLR 150

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR 626
                   + G +                  G TR
Sbjct: 151 ELLRERAEKMGQNL------NRIPYKDTFWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 85.6 bits (213), Expect = 2e-19
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           +  +   A ++A+       PLH+A   G       L+ +GA  ++ +  G   + +A  
Sbjct: 89  QKLLQYKADINAVNEHGN-VPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA 147

Query: 62  FGHTRIVAYLVAKGINVN 79
                +       G N+N
Sbjct: 148 PLRELLRERAEKMGQNLN 165

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 83.3 bits (207), Expect = 2e-18
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 5/110 (4%)

Query: 49  DSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 107
             E    I    + G+   V   +     ++N  D +G + L W+  +        +LI 
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREG-RSAVVEMLIM 60

Query: 108 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
            GA   + ++   +  LH A     H  I   L+ + + +   N  G  P
Sbjct: 61  RGARINVMNR-GDDTPLHLAAS-HGHRDIVQKLLQYKADINAVNEHGNVP 108

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 62.4 bits (153), Expect = 2e-11
 Identities = 9/65 (13%), Positives = 17/65 (26%), Gaps = 7/65 (10%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           +  ++ GA+V       +  P+  A             + G +                 
Sbjct: 122 EDLVANGALVSICNKYGE-MPVDKAKAPLRELLRERAEKMGQNL------NRIPYKDTFW 174

Query: 62  FGHTR 66
            G TR
Sbjct: 175 KGTTR 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  148 bits (376), Expect = 9e-41
 Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 11/182 (6%)

Query: 537 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 596
           D+      + T         R  ++         V          PLH A ++G+L  + 
Sbjct: 37  DIIYITDMSDTNWWKGTSKGRTGLIP-----SNYVAEQAES-IDNPLHEAAKRGNLSWLR 90

Query: 597 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAYK 655
             + +      +D  GST ++ A   GH  IV  L  +  I +N Q++ G TAL  +A+K
Sbjct: 91  ECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK 150

Query: 656 VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGL 714
               D  +LL+  GA T +++     +A   A       ++        +   + NA+  
Sbjct: 151 G-YADIVQLLLAKGARTDLRNI-EKKLAFDMATN-AACASLLKKKQGTDAVRTLSNAEDY 207

Query: 715 TP 716
             
Sbjct: 208 LD 209

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  146 bits (370), Expect = 6e-40
 Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 4/157 (2%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           +     V E        LH AA    +  ++  +     V+ +      T L+WA   GH
Sbjct: 60  LIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGS-TALYWACHGGH 118

Query: 592 LDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
            D V +L      +    +  G T +H AA  G+  IV  L+AKG   +L++     A  
Sbjct: 119 KDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFD 178

Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA 687
            +          +      A  T+ +     +    +
Sbjct: 179 MATNAA-CASLLKKKQGTDAVRTLSNA-EDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  132 bits (334), Expect = 4e-35
 Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 11/175 (6%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
             +  A              +   +  I  D+  T     T +G        +       
Sbjct: 14  VKVFRALYTFEPRTPDELYIEEGDIIYI-TDMSDTNWWKGTSKGRTG-----LIPSNYVA 67

Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 666
                    +H+AA+ G+   +   +   + VN  D+ G TAL W+ +     D   +L 
Sbjct: 68  EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG-HKDIVEMLF 126

Query: 667 T-FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
           T        Q+K  G+ ALH A + K +  I   L++  +  ++ N +    F +
Sbjct: 127 TQPNIELNQQNK-LGDTALHAAAW-KGYADIVQLLLAKGARTDLRNIEKKLAFDM 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  131 bits (333), Expect = 5e-35
 Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 6/154 (3%)

Query: 5   ISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH 64
           +     V          PLH A ++G+L  +   + +      +D  GST ++ A   GH
Sbjct: 60  LIPSNYVAEQAES-IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGH 118

Query: 65  TRIVAYLVAK-GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVA 123
             IV  L  +  I +N Q++ G TAL  +A+K    D  +LL+  GA T +++     +A
Sbjct: 119 KDIVEMLFTQPNIELNQQNKLGDTALHAAAWKG-YADIVQLLLAKGARTDLRNI-EKKLA 176

Query: 124 LHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
              A       ++        +   + NA+    
Sbjct: 177 FDMATN-AACASLLKKKQGTDAVRTLSNAEDYLD 209

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  131 bits (331), Expect = 1e-34
 Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 2/125 (1%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQG 590
           ++    VN  D    T L+WA      +I++   +Q    ++     L  T LH A  +G
Sbjct: 93  LDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ-QNKLGDTALHAAAWKG 151

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
           + D V LL+  GA   L + E       A       ++           L +        
Sbjct: 152 YADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDE 211

Query: 651 WSAYK 655
            S  +
Sbjct: 212 DSDLE 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  119 bits (301), Expect = 1e-30
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 4/128 (3%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQA 59
           ++  +     V+ +      T L+WA   GH D V +L      +    +  G T +H A
Sbjct: 89  LRECLDNRVGVNGLDKAGS-TALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA 147

Query: 60  AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 119
           A  G+  IV  L+AKG   +L++     A   +          +      A  T+ +   
Sbjct: 148 AWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAA-CASLLKKKQGTDAVRTLSNA-E 205

Query: 120 GNVALHWA 127
             +    +
Sbjct: 206 DYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  114 bits (287), Expect = 9e-29
 Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 11/160 (6%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
                +   +  I  D+  T     T +G        +                +H+AA+
Sbjct: 29  DELYIEEGDIIYIT-DMSDTNWWKGTSKGRTG-----LIPSNYVAEQAESIDNPLHEAAK 82

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT-FGASTTIQDKIHG 120
            G+   +   +   + VN  D+ G TAL W+ +     D   +L T        Q+K  G
Sbjct: 83  RGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG-HKDIVEMLFTQPNIELNQQNK-LG 140

Query: 121 NVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
           + ALH A + K +  I   L++  +  ++ N +    F +
Sbjct: 141 DTALHAAAW-KGYADIVQLLLAKGARTDLRNIEKKLAFDM 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  101 bits (254), Expect = 2e-24
 Identities = 26/138 (18%), Positives = 41/138 (29%), Gaps = 10/138 (7%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
             +  A       +   L     D   +     T   +    G T ++         V  
Sbjct: 14  VKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI-----PSNYVAE 68

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 139
           Q  +    L  +A +  +L   R  +         DK  G+ AL+WA +   H  I   L
Sbjct: 69  QAESIDNPLHEAAKR-GNLSWLRECLDNRVGVNGLDK-AGSTALYWACH-GGHKDIVEML 125

Query: 140 VSHT-SSLEIPNAQGLTP 156
            +     L   N  G T 
Sbjct: 126 FTQPNIELNQQNKLGDTA 143

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  100 bits (250), Expect = 7e-24
 Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 2/95 (2%)

Query: 2   KYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +   +Q    ++     L  T LH A  +G+ D V LL+  GA   L + E       A 
Sbjct: 123 EMLFTQPNIELNQ-QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMAT 181

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 95
                 ++           L +         S  +
Sbjct: 182 NAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLE 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 98.9 bits (247), Expect = 2e-23
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 533 EAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL 592
           +   ++N+ +    T LH AA     +I++  +++GA  D    + +      AT     
Sbjct: 128 QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKK-LAFDMATNAACA 186

Query: 593 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH 624
             +       A  TL ++E       +    H
Sbjct: 187 SLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 9/106 (8%)

Query: 52  GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 111
           G   + +A      R    L  +  ++        T       K       R  +     
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG------RTGLIPSNY 65

Query: 112 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
              Q +   +  LH A   + +++     + +   +   +  G T 
Sbjct: 66  VAEQAE-SIDNPLHEAAK-RGNLSWLRECLDNRVGVNGLDKAGSTA 109

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 9/106 (8%)

Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
           G   + +A      R    L  +  ++        T       K       R  +     
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG------RTGLIPSNY 65

Query: 672 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 716
              Q +   +  LH A   + +++     + +   +   +  G T 
Sbjct: 66  VAEQAE-SIDNPLHEAAK-RGNLSWLRECLDNRVGVNGLDKAGSTA 109

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 67.7 bits (166), Expect = 9e-13
 Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 1/64 (1%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           ++  +++GA  D    + +      AT       +       A  TL ++E       + 
Sbjct: 156 VQLLLAKGARTDLRNIEKK-LAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSD 214

Query: 61  QFGH 64
              H
Sbjct: 215 LEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 6/62 (9%), Positives = 15/62 (24%), Gaps = 1/62 (1%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           +  G   +  + E       A       ++K      A+      +        +  + H
Sbjct: 160 LAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAE-DYLDDEDSDLEHH 218

Query: 592 LD 593
             
Sbjct: 219 HH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 7/81 (8%), Positives = 15/81 (18%), Gaps = 7/81 (8%)

Query: 79  NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT 138
               + G   +  + Y  F       L               +         K      T
Sbjct: 6   PKPVKPGQVKVFRALYT-FEPRTPDELYIEEGDIIYITD-MSDTNWWKGTS-KGR----T 58

Query: 139 LVSHTSSLEIPNAQGLTPFML 159
            +  ++ +         P   
Sbjct: 59  GLIPSNYVAEQAESIDNPLHE 79

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 7/81 (8%), Positives = 15/81 (18%), Gaps = 7/81 (8%)

Query: 639 NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT 698
               + G   +  + Y  F       L               +         K      T
Sbjct: 6   PKPVKPGQVKVFRALYT-FEPRTPDELYIEEGDIIYITD-MSDTNWWKGTS-KGR----T 58

Query: 699 LVSHTSSLEIPNAQGLTPFML 719
            +  ++ +         P   
Sbjct: 59  GLIPSNYVAEQAESIDNPLHE 79

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  144 bits (367), Expect = 3e-40
 Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 5/153 (3%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
             L  AA   + + ++  ++ GA        L  +PLH A + GH  +  +L++ G    
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 666
                  T +H AA  GH  IV  L+  G +VN +D   MTAL W+       +   LLI
Sbjct: 62  ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH-NHQEVVELLI 120

Query: 667 TFGASTTIQDKIHGNVALHWAIYAKNHVAITTL 699
            +GA    Q K     A   +I    +  +  +
Sbjct: 121 KYGADVHTQSK-FCKTAFDISID-NGNEDLAEI 151

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  128 bits (324), Expect = 1e-34
 Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            +  G      D    + LH AA        +  +  G   DA     + TPLH A  +G
Sbjct: 21  LMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR-TPLHMAASEG 78

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
           H + V +L++HGAD    D    T +H A +  H  +V  L+  G +V+ Q +   TA  
Sbjct: 79  HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFD 138

Query: 651 WSAYK 655
            S   
Sbjct: 139 ISIDN 143

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  122 bits (308), Expect = 2e-32
 Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 5/138 (3%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           +  ++ GA        L  +PLH A + GH  +  +L++ G           T +H AA 
Sbjct: 19  RILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAAS 76

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
            GH  IV  L+  G +VN +D   MTAL W+       +   LLI +GA    Q K    
Sbjct: 77  EGHANIVEVLLKHGADVNAKDMLKMTALHWATEH-NHQEVVELLIKYGADVHTQSK-FCK 134

Query: 122 VALHWAIYAKNHVAITTL 139
            A   +I    +  +  +
Sbjct: 135 TAFDISID-NGNEDLAEI 151

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  110 bits (278), Expect = 2e-28
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 5/140 (3%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
             L  A R G  D V +L+ +GA  T  D  G++ +H AAQ+GH      L+  G++ + 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 139
           + +   T L  +A +    +   +L+  GA    +D      ALHWA    NH  +   L
Sbjct: 63  RTKVDRTPLHMAASE-GHANIVEVLLKHGADVNAKDM-LKMTALHWATE-HNHQEVVELL 119

Query: 140 VSHTSSLEIPNAQGLTPFML 159
           + + + +   +    T F +
Sbjct: 120 IKYGADVHTQSKFCKTAFDI 139

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  110 bits (278), Expect = 2e-28
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 5/140 (3%)

Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
             L  A R G  D V +L+ +GA  T  D  G++ +H AAQ+GH      L+  G++ + 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 699
           + +   T L  +A +    +   +L+  GA    +D      ALHWA    NH  +   L
Sbjct: 63  RTKVDRTPLHMAASE-GHANIVEVLLKHGADVNAKDM-LKMTALHWATE-HNHQEVVELL 119

Query: 700 VSHTSSLEIPNAQGLTPFML 719
           + + + +   +    T F +
Sbjct: 120 IKYGADVHTQSKFCKTAFDI 139

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  104 bits (263), Expect = 3e-26
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           + AG   +       T LH AA      I++  +  GA V+A       T LHWAT   H
Sbjct: 54  LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM-TALHWATEHNH 112

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 631
            + V LLI++GAD         T    +   G+  +   L
Sbjct: 113 QEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 78.2 bits (194), Expect = 5e-17
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 5/110 (4%)

Query: 51  EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
           +    + +AA+ G    V  L+A G      D  G + L  +A        T +L+  G 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQY-GHFSTTEVLLRAGV 58

Query: 111 STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
           S   + K      LH A   + H  I   L+ H + +   +   +T    
Sbjct: 59  SRDARTK-VDRTPLHMAAS-EGHANIVEVLLKHGADVNAKDMLKMTALHW 106

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 78.2 bits (194), Expect = 5e-17
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 5/110 (4%)

Query: 611 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 670
           +    + +AA+ G    V  L+A G      D  G + L  +A        T +L+  G 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQY-GHFSTTEVLLRAGV 58

Query: 671 STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
           S   + K      LH A   + H  I   L+ H + +   +   +T    
Sbjct: 59  SRDARTK-VDRTPLHMAAS-EGHANIVEVLLKHGADVNAKDMLKMTALHW 106

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 74.0 bits (183), Expect = 1e-15
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           +  +  GA V+A       T LHWAT   H + V LLI++GAD         T    +  
Sbjct: 84  EVLLKHGADVNAKDMLKM-TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISID 142

Query: 62  FGHTRIVAYL 71
            G+  +   L
Sbjct: 143 NGNEDLAEIL 152

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  151 bits (384), Expect = 3e-40
 Identities = 45/211 (21%), Positives = 71/211 (33%), Gaps = 33/211 (15%)

Query: 537 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 596
           +  + D E +  +H AA   + + ++  I  G            T LH A + G +D+  
Sbjct: 12  NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGC-TALHLACKFGCVDTAK 70

Query: 597 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG--------------------- 635
            L   G   +L    G   IH A     T +V  LV                        
Sbjct: 71  YLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNE 128

Query: 636 INVNLQDRNGMTALMWSAYK-VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
           I  +++   G TAL W        L+  ++L+  GAS T +DK      L  A+    + 
Sbjct: 129 IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK-ADETPLMRAME-FRNR 186

Query: 695 AITTL------VSHTSSLEIPNAQGLTPFML 719
               L         +  L+  N QG +    
Sbjct: 187 EALDLMMDTVPSKSSLRLDYANKQGNSHLHW 217

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  140 bits (354), Expect = 3e-36
 Identities = 29/206 (14%), Positives = 59/206 (28%), Gaps = 21/206 (10%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFI-----SQGAIVDAIGGDLQATPLHWA 586
           V+ G      D    T L  A      E +   +          +D        + LHWA
Sbjct: 160 VQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN-SHLHWA 218

Query: 587 TRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDR--- 643
                 D  +  ++ G D  + D+E +  ++ + +     +   L+ K     +Q     
Sbjct: 219 ILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYH 278

Query: 644 NGMTALMWSAYKVFSL---------DPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
           NG T L      +  +         +  +LL              G          K   
Sbjct: 279 NGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLN-TGAGGAVKRKK-KAAP 336

Query: 695 AIT-TLVSHTSSLEIPNAQGLTPFML 719
           A+    ++ ++ +   +        +
Sbjct: 337 AVKRMKLAPSAPVRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  127 bits (322), Expect = 4e-32
 Identities = 37/196 (18%), Positives = 71/196 (36%), Gaps = 27/196 (13%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG- 590
           VE  ++  +               +  E+ +     G+ V    G    T LHW    G 
Sbjct: 104 VEGAKERGQ------MPESLLNECDEREVNEI----GSHVKHCKGQ---TALHWCVGLGP 150

Query: 591 -HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV-----AKGINVNLQDRN 644
            +L+ + +L+Q GA PT  D    T + +A +F +   +  ++        + ++  ++ 
Sbjct: 151 EYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ 210

Query: 645 GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHT 703
           G + L W+       D     +  G    ++D     V L+ ++     V +T  L+  T
Sbjct: 211 GNSHLHWAILI-NWEDVAMRFVEMGIDVNMEDN-EHTVPLYLSVR-AAMVLLTKELLQKT 267

Query: 704 SSLEIPNAQ---GLTP 716
               I       G T 
Sbjct: 268 DVFLIQACPYHNGTTV 283

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  125 bits (316), Expect = 3e-31
 Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 12/132 (9%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQ----------- 579
           FVE G DVN  D+E    L+ +     + + K  + +  +                    
Sbjct: 230 FVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVV 289

Query: 580 -ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 638
               +  A      + + LL +   +     + G+    +  +     +    +A    V
Sbjct: 290 WLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPV 349

Query: 639 NLQDRNGMTALM 650
             + R+   +  
Sbjct: 350 RTRSRSRARSSA 361

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  121 bits (305), Expect = 8e-30
 Identities = 40/187 (21%), Positives = 60/187 (32%), Gaps = 33/187 (17%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           ++  I  G            T LH A + G +D+   L   G   +L    G   IH A 
Sbjct: 36  VRRLIETGVSPTIQNRFGC-TALHLACKFGCVDTAKYLASVGEVHSLWH--GQKPIHLAV 92

Query: 61  QFGHTRIVAYLVAKG---------------------INVNLQDRNGMTALMWSAYK-VFS 98
               T +V  LV                        I  +++   G TAL W        
Sbjct: 93  MANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEY 152

Query: 99  LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL------VSHTSSLEIPNAQ 152
           L+  ++L+  GAS T +DK      L  A+    +     L         +  L+  N Q
Sbjct: 153 LEMIKILVQLGASPTAKDK-ADETPLMRAME-FRNREALDLMMDTVPSKSSLRLDYANKQ 210

Query: 153 GLTPFML 159
           G +    
Sbjct: 211 GNSHLHW 217

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  119 bits (301), Expect = 3e-29
 Identities = 27/177 (15%), Positives = 55/177 (31%), Gaps = 21/177 (11%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLI-----QHGADPTLMDSEGSTC 55
           +K  +  GA   A       TPL  A    + +++ L++     +        + +G++ 
Sbjct: 156 IKILVQLGASPTAKDKA-DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH 214

Query: 56  IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 115
           +H A       +    V  GI+VN++D      L  S      +  T+ L+       IQ
Sbjct: 215 LHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAA-MVLLTKELLQKTDVFLIQ 273

Query: 116 D------------KIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
                        ++     +  A    +   +   L      +      G    + 
Sbjct: 274 ACPYHNGTTVLPDRVVWLDFVPAAAD-PSKQEVLQLLQEKLDEVVRSLNTGAGGAVK 329

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  114 bits (288), Expect = 1e-27
 Identities = 36/182 (19%), Positives = 60/182 (32%), Gaps = 33/182 (18%)

Query: 7   QGAIVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
            G++ D    +           +H A R+G  D V  LI+ G  PT+ +  G T +H A 
Sbjct: 2   PGSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLAC 61

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAST-------- 112
           +FG      YL + G   +    +G   +  +       D    L+              
Sbjct: 62  KFGCVDTAKYLASVGEVHS--LWHGQKPIHLAVMA-NKTDLVVALVEGAKERGQMPESLL 118

Query: 113 -------------TIQDKIHGNVALHWAI-YAKNHVAIT-TLVSHTSSLEIPNAQGLTPF 157
                         ++    G  ALHW +     ++ +   LV   +S    +    TP 
Sbjct: 119 NECDEREVNEIGSHVKHC-KGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPL 177

Query: 158 ML 159
           M 
Sbjct: 178 MR 179

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  114 bits (288), Expect = 1e-27
 Identities = 36/182 (19%), Positives = 60/182 (32%), Gaps = 33/182 (18%)

Query: 567 QGAIVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 620
            G++ D    +           +H A R+G  D V  LI+ G  PT+ +  G T +H A 
Sbjct: 2   PGSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLAC 61

Query: 621 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAST-------- 672
           +FG      YL + G   +    +G   +  +       D    L+              
Sbjct: 62  KFGCVDTAKYLASVGEVHS--LWHGQKPIHLAVMA-NKTDLVVALVEGAKERGQMPESLL 118

Query: 673 -------------TIQDKIHGNVALHWAI-YAKNHVAIT-TLVSHTSSLEIPNAQGLTPF 717
                         ++    G  ALHW +     ++ +   LV   +S    +    TP 
Sbjct: 119 NECDEREVNEIGSHVKHC-KGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPL 177

Query: 718 ML 719
           M 
Sbjct: 178 MR 179

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  113 bits (286), Expect = 2e-27
 Identities = 31/147 (21%), Positives = 58/147 (39%), Gaps = 14/147 (9%)

Query: 21  TPLHWATRQG--HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV-----A 73
           T LHW    G  +L+ + +L+Q GA PT  D    T + +A +F +   +  ++      
Sbjct: 140 TALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSK 199

Query: 74  KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH 133
             + ++  ++ G + L W+       D     +  G    ++D     V L+ ++     
Sbjct: 200 SSLRLDYANKQGNSHLHWAILI-NWEDVAMRFVEMGIDVNMEDN-EHTVPLYLSVR-AAM 256

Query: 134 VAIT-TLVSHTSSLEIPNAQ---GLTP 156
           V +T  L+  T    I       G T 
Sbjct: 257 VLLTKELLQKTDVFLIQACPYHNGTTV 283

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  110 bits (277), Expect = 4e-26
 Identities = 22/177 (12%), Positives = 51/177 (28%), Gaps = 21/177 (11%)

Query: 1   MKYFI-----SQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTC 55
           +   +          +D        + LHWA      D  +  ++ G D  + D+E +  
Sbjct: 189 LDLMMDTVPSKSSLRLDYANKQGN-SHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVP 247

Query: 56  IHQAAQFGHTRIVAYLVAKGINVNLQDR---NGMTALMWSAYKVFSL---------DPTR 103
           ++ + +     +   L+ K     +Q     NG T L      +  +         +  +
Sbjct: 248 LYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQ 307

Query: 104 LLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
           LL              G          K   A+    ++ ++ +   +        +
Sbjct: 308 LLQEKLDEVVRSLN-TGAGGAVKRKK-KAAPAVKRMKLAPSAPVRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 89.9 bits (224), Expect = 2e-19
 Identities = 7/85 (8%), Positives = 21/85 (24%), Gaps = 1/85 (1%)

Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
           G  V       +  +  AA  ++ E+++    +   V                ++     
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGA-GGAVKRKKKAAPAV 338

Query: 595 VVLLIQHGADPTLMDSEGSTCIHQA 619
             + +   A         +     +
Sbjct: 339 KRMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 59.5 bits (145), Expect = 2e-09
 Identities = 2/58 (3%), Positives = 10/58 (17%), Gaps = 1/58 (1%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
           +    +   V                ++       + +   A         +     +
Sbjct: 307 QLLQEKLDEVVRSLNTGA-GGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  144 bits (367), Expect = 3e-40
 Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 7/158 (4%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
             L  AA    +E +   +     V+A  G  + T L    + G+ +    L+  GA+P 
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGR-TALQVM-KLGNPEIARRLLLRGANPD 64

Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 666
           L D  G   IH AA+ G    +  L+    +VN++D  G   L  +A +   L     L+
Sbjct: 65  LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG-HLRVVEFLV 123

Query: 667 TFGAST-TIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
              AS    ++   G+ A   A        +   + ++
Sbjct: 124 KHTASNVGHRNH-KGDTACDLARL-YGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  129 bits (328), Expect = 5e-35
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 4/141 (2%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            ++   +VN  +    T L    + N  EI +  + +GA  D          +H A R G
Sbjct: 24  LLQNNVNVNAQNGFGRTALQVMKLGN-PEIARRLLLRGANPDLKDRTGF-AVIHDAARAG 81

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTAL 649
            LD++  L++  AD  + D+EG+  +H AA+ GH R+V +LV     NV  ++  G TA 
Sbjct: 82  FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141

Query: 650 MWSAYKVFSLDPTRLLITFGA 670
             +       +   L+   GA
Sbjct: 142 DLARLY-GRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  120 bits (305), Expect = 6e-32
 Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 7/143 (4%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
              +     V+A  G  + T L    + G+ +    L+  GA+P L D  G   IH AA+
Sbjct: 22  TSLLQNNVNVNAQNGFGR-TALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAAR 79

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAST-TIQDKIHG 120
            G    +  L+    +VN++D  G   L  +A +   L     L+   AS    ++   G
Sbjct: 80  AGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG-HLRVVEFLVKHTASNVGHRNH-KG 137

Query: 121 NVALHWAIYAKNHVAIT-TLVSH 142
           + A   A        +   + ++
Sbjct: 138 DTACDLARL-YGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  116 bits (294), Expect = 2e-30
 Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 6/141 (4%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
             L  A  +G L+ +  L+Q+  +    +  G T +    + G+  I   L+ +G N +L
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDL 65

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-L 139
           +DR G   +  +A     LD  + L+ F A   I+D   GN+ LH A   + H+ +   L
Sbjct: 66  KDRTGFAVIHDAARA-GFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAK-EGHLRVVEFL 122

Query: 140 VSH-TSSLEIPNAQGLTPFML 159
           V H  S++   N +G T   L
Sbjct: 123 VKHTASNVGHRNHKGDTACDL 143

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 83.2 bits (207), Expect = 1e-18
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 5/113 (4%)

Query: 48  MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 107
           M       +  AA  G    +  L+   +NVN Q+  G TAL        + +  R L+ 
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG--NPEIARRLLL 58

Query: 108 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
            GA+  ++D+  G   +H A      +    TL+   + + I + +G  P  L
Sbjct: 59  RGANPDLKDR-TGFAVIHDAAR-AGFLDTLQTLLEFQADVNIEDNEGNLPLHL 109

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 83.2 bits (207), Expect = 1e-18
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 5/113 (4%)

Query: 608 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 667
           M       +  AA  G    +  L+   +NVN Q+  G TAL        + +  R L+ 
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG--NPEIARRLLL 58

Query: 668 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
            GA+  ++D+  G   +H A      +    TL+   + + I + +G  P  L
Sbjct: 59  RGANPDLKDR-TGFAVIHDAAR-AGFLDTLQTLLEFQADVNIEDNEGNLPLHL 109

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 72.4 bits (179), Expect = 6e-15
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA-DPTLMDSEGSTCIHQAA 60
           +  +   A V+    +    PLH A ++GHL  V  L++H A +    + +G T    A 
Sbjct: 87  QTLLEFQADVNIEDNEGN-LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145

Query: 61  QFGHTRIVAYLVAKG 75
            +G   +V+ + A G
Sbjct: 146 LYGRNEVVSLMQANG 160

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 47.0 bits (113), Expect = 3e-06
 Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 2/43 (4%)

Query: 2   KYFISQGAI-VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA 43
           ++ +   A  V         T    A   G  + V L+  +GA
Sbjct: 120 EFLVKHTASNVGHRNHKGD-TACDLARLYGRNEVVSLMQANGA 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  144 bits (367), Expect = 3e-40
 Identities = 47/170 (27%), Positives = 69/170 (40%), Gaps = 10/170 (5%)

Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI-VDAIGGDLQATPLHWATRQGHLD 593
           G   N  +++    L  AA    +E +K   +  ++    I G    TPLH+A     + 
Sbjct: 1   GAMGNS-EADRQ--LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVS 56

Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 653
            V  L+QHGAD    D  G   +H A  +GH  +   LV  G  VN+ D    T L  +A
Sbjct: 57  VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 116

Query: 654 YKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
            K    +  +LL+  GA  T +++  GN  L           I   L   
Sbjct: 117 AK-GKYEICKLLLQHGADPTKKNR-DGNTPLDLV--KDGDTDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  137 bits (349), Expect = 9e-38
 Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 7/138 (5%)

Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGHL 592
             +  + +    T LH+AA  NR+ +++Y +  GA V A   GG     PLH A   GH 
Sbjct: 32  SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGL---VPLHNACSYGHY 88

Query: 593 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 652
           +   LL++HGA   + D    T +H+AA  G   I   L+  G +   ++R+G T L   
Sbjct: 89  EVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV 148

Query: 653 AYKVFSLDPTRLLITFGA 670
                  D   LL    A
Sbjct: 149 KDG--DTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  119 bits (302), Expect = 2e-31
 Identities = 41/143 (28%), Positives = 58/143 (40%), Gaps = 7/143 (4%)

Query: 2   KYFISQGAI-VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           K   +  ++    I G    TPLH+A     +  V  L+QHGAD    D  G   +H A 
Sbjct: 25  KKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC 83

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
            +GH  +   LV  G  VN+ D    T L  +A K    +  +LL+  GA  T +++  G
Sbjct: 84  SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK-GKYEICKLLLQHGADPTKKNR-DG 141

Query: 121 NVALHWAIYAKNHVAIT-TLVSH 142
           N  L           I   L   
Sbjct: 142 NTPLDLV--KDGDTDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  112 bits (282), Expect = 1e-28
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 9/158 (5%)

Query: 8   GAIVDAIGGDLQATPLHWATRQGHLDSVVLLI-QHGADPTLMDSEGSTCIHQAAQFGHTR 66
           GA+ ++         L  A + G +++V  L      +   ++   ST +H AA +    
Sbjct: 1   GAMGNSEAD----RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVS 56

Query: 67  IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 126
           +V YL+  G +V+ +D+ G+  L  +       +   LL+  GA   + D       LH 
Sbjct: 57  VVEYLLQHGADVHAKDKGGLVPLHNACSYG-HYEVAELLVKHGAVVNVADL-WKFTPLHE 114

Query: 127 AIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 163
           A   K    I   L+ H +     N  G TP  L+++ 
Sbjct: 115 AAA-KGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 151

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  112 bits (282), Expect = 1e-28
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 9/158 (5%)

Query: 568 GAIVDAIGGDLQATPLHWATRQGHLDSVVLLI-QHGADPTLMDSEGSTCIHQAAQFGHTR 626
           GA+ ++         L  A + G +++V  L      +   ++   ST +H AA +    
Sbjct: 1   GAMGNSEAD----RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVS 56

Query: 627 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 686
           +V YL+  G +V+ +D+ G+  L  +       +   LL+  GA   + D       LH 
Sbjct: 57  VVEYLLQHGADVHAKDKGGLVPLHNACSYG-HYEVAELLVKHGAVVNVADL-WKFTPLHE 114

Query: 687 AIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 723
           A   K    I   L+ H +     N  G TP  L+++ 
Sbjct: 115 AAA-KGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 151

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  105 bits (266), Expect = 1e-26
 Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 7/111 (6%)

Query: 2   KYFISQGAIVDA--IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
           +Y +  GA V A   GG     PLH A   GH +   LL++HGA   + D    T +H+A
Sbjct: 59  EYLLQHGADVHAKDKGGL---VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 115

Query: 60  AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
           A  G   I   L+  G +   ++R+G T L          D   LL    A
Sbjct: 116 AAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG--DTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 75.9 bits (188), Expect = 4e-16
 Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           V+ G  VN  D    T LH AA   + EI K  +  GA       D   TPL    + G 
Sbjct: 95  VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN-TPLDLV-KDGD 152

Query: 592 LDSVVLLIQHGA 603
            D   LL    A
Sbjct: 153 TDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 42.0 bits (100), Expect = 2e-04
 Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 1/36 (2%)

Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI 570
           G D  + + +  T L     +   +I        A+
Sbjct: 131 GADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAAL 165

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  142 bits (362), Expect = 7e-40
 Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 4/138 (2%)

Query: 534 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 593
               ++     +   L  AA   ++E ++  +  GA  +A+    +  P+      G   
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGR-RPIQVMM-MGSAQ 58

Query: 594 SVVLLIQHGADPTLMDSEGSTC-IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 652
              LL+ HGA+P   D    T  +H AA+ G    +  L   G  +++ D  G   +  +
Sbjct: 59  VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA 118

Query: 653 AYKVFSLDPTRLLITFGA 670
             +    D  R L     
Sbjct: 119 EEQG-HRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  117 bits (295), Expect = 7e-31
 Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 7/137 (5%)

Query: 8   GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRI 67
              +  +GG      L  A  +G +++V  L++ GADP  ++  G   I      G  ++
Sbjct: 2   SPGIHMLGGSSD-AGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQV 59

Query: 68  VAYLVAKGINVNLQDRNGMT-ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 126
              L+  G   N  D   +T  +  +A +   LD   +L   GA   + D   G + +  
Sbjct: 60  AELLLLHGAEPNCADPATLTRPVHDAAREG-FLDTLVVLHRAGARLDVCDA-WGRLPVDL 117

Query: 127 AIYAKNHVAIT-TLVSH 142
           A   + H  I   L + 
Sbjct: 118 AEE-QGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  117 bits (295), Expect = 7e-31
 Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 7/137 (5%)

Query: 568 GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRI 627
              +  +GG      L  A  +G +++V  L++ GADP  ++  G   I      G  ++
Sbjct: 2   SPGIHMLGGSSD-AGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQV 59

Query: 628 VAYLVAKGINVNLQDRNGMT-ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 686
              L+  G   N  D   +T  +  +A +   LD   +L   GA   + D   G + +  
Sbjct: 60  AELLLLHGAEPNCADPATLTRPVHDAAREG-FLDTLVVLHRAGARLDVCDA-WGRLPVDL 117

Query: 687 AIYAKNHVAIT-TLVSH 702
           A   + H  I   L + 
Sbjct: 118 AEE-QGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  115 bits (290), Expect = 3e-30
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           +EAG D N  +      +         ++ +  +  GA  +         P+H A R+G 
Sbjct: 32  LEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGF 90

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 635
           LD++V+L + GA   + D+ G   +  A + GH  I  YL A  
Sbjct: 91  LDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  109 bits (274), Expect = 5e-28
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 4/110 (3%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTC-IHQAA 60
           +  +  GA  +A+    +  P+      G      LL+ HGA+P   D    T  +H AA
Sbjct: 29  RQLLEAGADPNALNRFGR-RPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAA 86

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
           + G    +  L   G  +++ D  G   +  +  +    D  R L     
Sbjct: 87  REGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQG-HRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 91.7 bits (229), Expect = 6e-22
 Identities = 23/119 (19%), Positives = 38/119 (31%), Gaps = 4/119 (3%)

Query: 42  GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 101
                ++       +  AA  G    V  L+  G + N  +R G   +        S   
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMG--SAQV 59

Query: 102 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
             LL+  GA     D       +H A   +  +     L    + L++ +A G  P  L
Sbjct: 60  AELLLLHGAEPNCADPATLTRPVHDAAR-EGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 91.7 bits (229), Expect = 6e-22
 Identities = 23/119 (19%), Positives = 38/119 (31%), Gaps = 4/119 (3%)

Query: 602 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 661
                ++       +  AA  G    V  L+  G + N  +R G   +        S   
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMG--SAQV 59

Query: 662 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
             LL+  GA     D       +H A   +  +     L    + L++ +A G  P  L
Sbjct: 60  AELLLLHGAEPNCADPATLTRPVHDAAR-EGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 86.7 bits (216), Expect = 3e-20
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 532 VEAGQDVNEPDSETVTL-LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
           +  G + N  D  T+T  +H AA    ++ +      GA +D      +  P+  A  QG
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGR-LPVDLAEEQG 122

Query: 591 HLDSVVLLIQHGAD 604
           H D    L     D
Sbjct: 123 HRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 56.7 bits (138), Expect = 9e-10
 Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 1/43 (2%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD 44
                 GA +D      +  P+  A  QGH D    L     D
Sbjct: 95  VVLHRAGARLDVCDAWGR-LPVDLAEEQGHRDIARYLHAATGD 136

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  142 bits (361), Expect = 2e-39
 Identities = 34/166 (20%), Positives = 56/166 (33%), Gaps = 13/166 (7%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           +E     +   S     L  AA   R+E ++  +  GA  +A     +  P+      G 
Sbjct: 1   MEPAAGSSMEPSADW--LATAAARGRVEEVRALLEAGANPNAPNSYGR-RPIQVMMM-GS 56

Query: 592 LDSVVLLIQHGADPTLMDSEGSTC-IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
                LL+ HGA+P   D    T  +H AA+ G    +  L   G  ++++D  G   + 
Sbjct: 57  ARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVD 116

Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 696
            +       D  R L      T   +             A+    I
Sbjct: 117 LAEELG-HRDVARYLRAAAGGTRGSNH------ARIDA-AEGPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  116 bits (293), Expect = 2e-30
 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 9/154 (5%)

Query: 5   ISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH 64
           +   A             L  A  +G ++ V  L++ GA+P   +S G   I      G 
Sbjct: 1   MEPAAGSSMEPSA---DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GS 56

Query: 65  TRIVAYLVAKGINVNLQDRNGMT-ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVA 123
            R+   L+  G   N  D   +T  +  +A + F LD   +L   GA   ++D   G + 
Sbjct: 57  ARVAELLLLHGAEPNCADPATLTRPVHDAAREGF-LDTLVVLHRAGARLDVRDA-WGRLP 114

Query: 124 LHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
           +  A     H  +   L +        N   +  
Sbjct: 115 VDLAEE-LGHRDVARYLRAAAGGTRGSNHARIDA 147

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  116 bits (293), Expect = 2e-30
 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 9/154 (5%)

Query: 565 ISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH 624
           +   A             L  A  +G ++ V  L++ GA+P   +S G   I      G 
Sbjct: 1   MEPAAGSSMEPSA---DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GS 56

Query: 625 TRIVAYLVAKGINVNLQDRNGMT-ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVA 683
            R+   L+  G   N  D   +T  +  +A + F LD   +L   GA   ++D   G + 
Sbjct: 57  ARVAELLLLHGAEPNCADPATLTRPVHDAAREGF-LDTLVVLHRAGARLDVRDA-WGRLP 114

Query: 684 LHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 716
           +  A     H  +   L +        N   +  
Sbjct: 115 VDLAEE-LGHRDVARYLRAAAGGTRGSNHARIDA 147

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  113 bits (286), Expect = 2e-29
 Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 11/137 (8%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTC-IHQA 59
           ++  +  GA  +A     +  P+      G      LL+ HGA+P   D    T  +H A
Sbjct: 28  VRALLEAGANPNAPNSYGR-RPIQVMMM-GSARVAELLLLHGAEPNCADPATLTRPVHDA 85

Query: 60  AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 119
           A+ G    +  L   G  ++++D  G   +  +       D  R L      T   +   
Sbjct: 86  AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELG-HRDVARYLRAAAGGTRGSNH-- 142

Query: 120 GNVALHWAIYAKNHVAI 136
                     A+    I
Sbjct: 143 ----ARIDA-AEGPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 98.7 bits (247), Expect = 3e-24
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 7/98 (7%)

Query: 532 VEAGQDVNEPDSETVTL-LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
           +  G + N  D  T+T  +H AA    ++ +      GA +D      +  P+  A   G
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR-LPVDLAEELG 122

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 628
           H D    L             GS      A  G + I 
Sbjct: 123 HRDVARYLRAAAGGT-----RGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 92.9 bits (232), Expect = 4e-22
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 6/122 (4%)

Query: 39  IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS 98
           ++  A  ++     +  +  AA  G    V  L+  G N N  +  G   +        S
Sbjct: 1   MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG--S 56

Query: 99  LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPF 157
                LL+  GA     D       +H A   +  +     L    + L++ +A G  P 
Sbjct: 57  ARVAELLLLHGAEPNCADPATLTRPVHDAAR-EGFLDTLVVLHRAGARLDVRDAWGRLPV 115

Query: 158 ML 159
            L
Sbjct: 116 DL 117

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 92.9 bits (232), Expect = 4e-22
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 6/122 (4%)

Query: 599 IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS 658
           ++  A  ++     +  +  AA  G    V  L+  G N N  +  G   +        S
Sbjct: 1   MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG--S 56

Query: 659 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPF 717
                LL+  GA     D       +H A   +  +     L    + L++ +A G  P 
Sbjct: 57  ARVAELLLLHGAEPNCADPATLTRPVHDAAR-EGFLDTLVVLHRAGARLDVRDAWGRLPV 115

Query: 718 ML 719
            L
Sbjct: 116 DL 117

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 67.9 bits (167), Expect = 2e-13
 Identities = 14/67 (20%), Positives = 18/67 (26%), Gaps = 6/67 (8%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
                 GA +D      +  P+  A   GH D    L             GS      A 
Sbjct: 95  VVLHRAGARLDVRDAWGR-LPVDLAEELGHRDVARYLRAAAGGT-----RGSNHARIDAA 148

Query: 62  FGHTRIV 68
            G + I 
Sbjct: 149 EGPSDIP 155

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  145 bits (366), Expect = 2e-39
 Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 3/194 (1%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            +         D ++ T LHWA      EI+++ +  G  V+        +PLH A   G
Sbjct: 26  ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW-SPLHIAASAG 84

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
             + V  L+  GA    ++  G T +H AA      I   L+  G N + +D    TA+ 
Sbjct: 85  XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMH 144

Query: 651 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPN 710
            +A K  +L    +L+ + AST IQD   GN  LH A   +       LV+  +S+ I N
Sbjct: 145 RAAAKG-NLKMVHILLFYKASTNIQDT-EGNTPLHLACDEERVEEAKFLVTQGASIYIEN 202

Query: 711 AQGLTPFMLLEENI 724
            +  TP  + +  +
Sbjct: 203 KEEKTPLQVAKGGL 216

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  143 bits (362), Expect = 8e-39
 Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 3/177 (1%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
            + + A      E+ +  ++  ++      D   T LHWA   GH + V  L+Q G    
Sbjct: 9   MICNLAYSGKLDELKERILADKSLATRTDQD-SRTALHWACSAGHTEIVEFLLQLGVPVN 67

Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 666
             D  G + +H AA  G   IV  L+ KG +VN  ++NG T L ++A K    +   +L+
Sbjct: 68  DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK-NRHEIAVMLL 126

Query: 667 TFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN 723
             GA+   +D  +   A+H A    N   +  L+ + +S  I + +G TP  L  + 
Sbjct: 127 EGGANPDAKDH-YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  123 bits (311), Expect = 4e-32
 Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 5/171 (2%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           ++ G  VN+ D    + LH AA     EI+K  + +GA V+A+  +   TPLH+A  +  
Sbjct: 60  LQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQN-GCTPLHYAASKNR 118

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
            +  V+L++ GA+P   D   +T +H+AA  G+ ++V  L+    + N+QD  G T L  
Sbjct: 119 HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL 178

Query: 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 702
           +  +   ++  + L+T GAS  I++K      L  A        I   ++ 
Sbjct: 179 ACDEE-RVEEAKFLVTQGASIYIENK-EEKTPLQVA--KGGLGLILKRLAE 225

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  121 bits (304), Expect = 4e-31
 Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 3/162 (1%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           +  ++  ++      D   T LHWA   GH + V  L+Q G      D  G + +H AA 
Sbjct: 24  ERILADKSLATRTDQD-SRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS 82

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 121
            G   IV  L+ KG +VN  ++NG T L ++A K    +   +L+  GA+   +D  +  
Sbjct: 83  AGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANPDAKDH-YDA 140

Query: 122 VALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN 163
            A+H A    N   +  L+ + +S  I + +G TP  L  + 
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  111 bits (280), Expect = 6e-28
 Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 3/164 (1%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +++ +  G  V+        +PLH A   G  + V  L+  GA    ++  G T +H AA
Sbjct: 56  VEFLLQLGVPVNDKDDAGW-SPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
                 I   L+  G N + +D    TA+  +A K  +L    +L+ + AST IQD   G
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG-NLKMVHILLFYKASTNIQDT-EG 172

Query: 121 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI 164
           N  LH A   +       LV+  +S+ I N +  TP  + +  +
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGL 216

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  110 bits (277), Expect = 2e-27
 Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 2/143 (1%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
              + A      +    ++   +  T  D +  T +H A   GHT IV +L+  G+ VN 
Sbjct: 9   MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 140
           +D  G + L  +A      +  + L+  GA     ++ +G   LH+A     H     L+
Sbjct: 69  KDDAGWSPLHIAASAG-XDEIVKALLVKGAHVNAVNQ-NGCTPLHYAASKNRHEIAVMLL 126

Query: 141 SHTSSLEIPNAQGLTPFMLLEEN 163
              ++ +  +    T        
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAK 149

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 95.7 bits (238), Expect = 3e-22
 Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 5/142 (3%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +K  + +GA V+A+  +   TPLH+A  +   +  V+L++ GA+P   D   +T +H+AA
Sbjct: 89  VKALLVKGAHVNAVNQN-GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAA 147

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
             G+ ++V  L+    + N+QD  G T L  +  +   ++  + L+T GAS  I++K   
Sbjct: 148 AKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE-RVEEAKFLVTQGASIYIENK-EE 205

Query: 121 NVALHWAIYAKNHVAITTLVSH 142
              L  A        I   ++ 
Sbjct: 206 KTPLQVA--KGGLGLILKRLAE 225

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 89.9 bits (223), Expect = 3e-20
 Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 3/110 (2%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            +E G + +  D    T +H AA    ++++   +   A  +    +   TPLH A  + 
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGN-TPLHLACDEE 183

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
            ++    L+  GA   + + E  T +  A   G   ++   +A+G   ++
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 80.3 bits (198), Expect = 5e-17
 Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 2/112 (1%)

Query: 52  GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 111
                + A       +   ++A        D++  TAL W+       +    L+  G  
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAG-HTEIVEFLLQLGVP 65

Query: 112 TTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN 163
              +D   G   LH A  A     +  L+   + +   N  G TP       
Sbjct: 66  VNDKDD-AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK 116

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 80.3 bits (198), Expect = 5e-17
 Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 2/112 (1%)

Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
                + A       +   ++A        D++  TAL W+       +    L+  G  
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAG-HTEIVEFLLQLGVP 65

Query: 672 TTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN 723
              +D   G   LH A  A     +  L+   + +   N  G TP       
Sbjct: 66  VNDKDD-AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK 116

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 65.7 bits (160), Expect = 6e-12
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +   +   A  +    +   TPLH A  +  ++    L+  GA   + + E  T +  A 
Sbjct: 155 VHILLFYKASTNIQDTEGN-TPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213

Query: 61  QFGHTRIVAYLVAKGINVNL 80
             G   ++   +A+G   ++
Sbjct: 214 --GGLGLILKRLAEGEEASM 231

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  145 bits (368), Expect = 5e-39
 Identities = 33/196 (16%), Positives = 57/196 (29%), Gaps = 18/196 (9%)

Query: 536 QDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSV 595
           + ++  +    T LH AAI      ++   + GA V         T LH A R       
Sbjct: 36  EYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG-GHTALHLACRVRAHTCA 94

Query: 596 VLLIQHGADPTLMDSEGSTC--------------IHQAAQFGHTRIVAYLVAKGINVNLQ 641
            +L+Q         S+                     +                + +  +
Sbjct: 95  CVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE 154

Query: 642 DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLV 700
           + +G T L  +       +  RLL   GA     +   G   LH A+      ++   L+
Sbjct: 155 NYDGHTPLHVAVIH-KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE-AQAASVLELLL 212

Query: 701 SHTSSLEIPNAQGLTP 716
              +        G TP
Sbjct: 213 KAGADPTARMYGGRTP 228

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  142 bits (360), Expect = 8e-38
 Identities = 32/203 (15%), Positives = 55/203 (27%), Gaps = 18/203 (8%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA----------- 580
             AG  V   +    T LH A            +           D              
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 581 -TPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 638
             P    ++    +                + +G T +H A       +V  L   G ++
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL 184

Query: 639 NLQDRN-GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT 697
           N  +   G T L  +     +     LL+  GA  T +    G   L  A+  + +  + 
Sbjct: 185 NKPEPTCGRTPLHLAVEA-QAASVLELLLKAGADPTARMY-GGRTPLGSALL-RPNPILA 241

Query: 698 -TLVSHTSSLEIPNAQGLTPFML 719
             L +H +         L+P   
Sbjct: 242 RLLRAHGAPEPEDGGDKLSPCSS 264

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  141 bits (358), Expect = 1e-37
 Identities = 27/124 (21%), Positives = 46/124 (37%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
            +    +   + +  T LH A I+   E+++     GA ++        TPLH A     
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA 204

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
              + LL++ GADPT     G T +  A    +  +   L A G        + ++    
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSS 264

Query: 652 SAYK 655
           S   
Sbjct: 265 SGSD 268

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  135 bits (342), Expect = 2e-35
 Identities = 33/190 (17%), Positives = 55/190 (28%), Gaps = 19/190 (10%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAI--GGDLQATPLHWATRQGHLDSVVLLIQHGAD 604
           T LH A I+     + + +   A  + +    DL  T LH A   G   +V  L   GA 
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70

Query: 605 PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-------------RNGMTALMW 651
             + +  G T +H A +         L+    +                           
Sbjct: 71  VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130

Query: 652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 710
            +      +       +      ++   G+  LH A+       +   L    + L  P 
Sbjct: 131 DSQPNPENEEEPRDEDWRLQLEAENY-DGHTPLHVAVI-HKDAEMVRLLRDAGADLNKPE 188

Query: 711 A-QGLTPFML 719
              G TP  L
Sbjct: 189 PTCGRTPLHL 198

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  118 bits (299), Expect = 9e-30
 Identities = 27/170 (15%), Positives = 46/170 (27%), Gaps = 18/170 (10%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTC------ 55
           +   + GA V         T LH A R        +L+Q         S+          
Sbjct: 62  EKLYAAGAGVLVAERG-GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120

Query: 56  --------IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 107
                      +                + +  ++ +G T L  +       +  RLL  
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH-KDAEMVRLLRD 179

Query: 108 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
            GA     +   G   LH A+      ++   L+   +        G TP
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVE-AQAASVLELLLKAGADPTARMYGGRTP 228

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  113 bits (285), Expect = 6e-28
 Identities = 31/155 (20%), Positives = 44/155 (28%), Gaps = 17/155 (10%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLM---DSEGSTCIHQAAQFGHTRIVAYLVAKGIN 77
           T LH A    H   +  L+   A    +   +  G T +H AA  G    V  L A G  
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70

Query: 78  VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK------------IHGNVALH 125
           V + +R G TAL  +     +     +L+    S                     +    
Sbjct: 71  VLVAERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129

Query: 126 WAIYAKNH-VAITTLVSHTSSLEIPNAQGLTPFML 159
                                LE  N  G TP  +
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV 164

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  112 bits (283), Expect = 1e-27
 Identities = 25/173 (14%), Positives = 47/173 (27%), Gaps = 18/173 (10%)

Query: 2   KYFISQGAIVDAIGGDLQA------------TPLHWATRQGHLDSVV-LLIQHGADPTLM 48
              +           D                P    ++    +                
Sbjct: 95  CVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE 154

Query: 49  DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-GMTALMWSAYKVFSLDPTRLLIT 107
           + +G T +H A       +V  L   G ++N  +   G T L  +     +     LL+ 
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA-QAASVLELLLK 213

Query: 108 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
            GA  T +    G   L  A+  + +  +   L +H +         L+P   
Sbjct: 214 AGADPTARMY-GGRTPLGSALL-RPNPILARLLRAHGAPEPEDGGDKLSPCSS 264

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  111 bits (281), Expect = 2e-27
 Identities = 28/175 (16%), Positives = 48/175 (27%), Gaps = 19/175 (10%)

Query: 2   KYFISQGAIVDAI--GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
            + +   A  + +    DL  T LH A   G   +V  L   GA   + +  G T +H A
Sbjct: 26  DFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA 85

Query: 60  AQFGHTRIVAYLVAKGINVNLQD-------------RNGMTALMWSAYKVFSLDPTRLLI 106
            +         L+    +                            +      +      
Sbjct: 86  CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDE 145

Query: 107 TFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNA-QGLTPFML 159
            +      ++   G+  LH A+       +   L    + L  P    G TP  L
Sbjct: 146 DWRLQLEAENY-DGHTPLHVAVI-HKDAEMVRLLRDAGADLNKPEPTCGRTPLHL 198

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  111 bits (280), Expect = 3e-27
 Identities = 21/94 (22%), Positives = 33/94 (35%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           +     GA ++        TPLH A        + LL++ GADPT     G T +  A  
Sbjct: 175 RLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL 234

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 95
             +  +   L A G        + ++    S   
Sbjct: 235 RPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSD 268

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  103 bits (258), Expect = 2e-24
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 2/98 (2%)

Query: 532 VEAGQDVNEPDSET-VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            +AG D+N+P+     T LH A       +++  +  GA   A     + TPL  A  + 
Sbjct: 178 RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGR-TPLGSALLRP 236

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 628
           +     LL  HGA       +  +    +     +   
Sbjct: 237 NPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 80.3 bits (199), Expect = 1e-16
 Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 7/112 (6%)

Query: 49  DSEGSTCIHQAAQFGHTRIVAYLVAKGIN---VNLQDRNGMTALMWSAYKVFSLDPTRLL 105
             +G T +H A    H   + +L+        ++LQ+  G TAL  +A           L
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG-EASTVEKL 64

Query: 106 ITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
              GA   + ++  G+ ALH A            L+    S     +     
Sbjct: 65  YAAGAGVLVAER-GGHTALHLACR-VRAHTCACVLLQPRPSHPRDASDTYLT 114

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 80.3 bits (199), Expect = 1e-16
 Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 7/112 (6%)

Query: 609 DSEGSTCIHQAAQFGHTRIVAYLVAKGIN---VNLQDRNGMTALMWSAYKVFSLDPTRLL 665
             +G T +H A    H   + +L+        ++LQ+  G TAL  +A           L
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG-EASTVEKL 64

Query: 666 ITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 716
              GA   + ++  G+ ALH A            L+    S     +     
Sbjct: 65  YAAGAGVLVAER-GGHTALHLACR-VRAHTCACVLLQPRPSHPRDASDTYLT 114

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 73.3 bits (181), Expect = 3e-14
 Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 1/67 (1%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           +  +  GA   A     + TPL  A  + +     LL  HGA       +  +    +  
Sbjct: 209 ELLLKAGADPTARMYGGR-TPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGS 267

Query: 62  FGHTRIV 68
              +   
Sbjct: 268 DSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 69.5 bits (171), Expect = 6e-13
 Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 1/71 (1%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           ++AG D         T L  A +     + +   + GA     GGD   +P   +     
Sbjct: 212 LKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKL-SPCSSSGSDSD 270

Query: 592 LDSVVLLIQHG 602
            D+     ++ 
Sbjct: 271 SDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 7/86 (8%)

Query: 78  VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTT---IQDKIHGNVALHWAIYAKNHV 134
                 +G TAL  +            L+ F A      +Q+   G  ALH A       
Sbjct: 2   FGYVTEDGDTALHLAVIHQ-HEPFLDFLLGFSAGHEYLDLQND-LGQTALHLAAI-LGEA 58

Query: 135 AIT-TLVSHTSSLEIPNAQGLTPFML 159
           +    L +  + + +    G T   L
Sbjct: 59  STVEKLYAAGAGVLVAERGGHTALHL 84

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 7/86 (8%)

Query: 638 VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTT---IQDKIHGNVALHWAIYAKNHV 694
                 +G TAL  +            L+ F A      +Q+   G  ALH A       
Sbjct: 2   FGYVTEDGDTALHLAVIHQ-HEPFLDFLLGFSAGHEYLDLQND-LGQTALHLAAI-LGEA 58

Query: 695 AIT-TLVSHTSSLEIPNAQGLTPFML 719
           +    L +  + + +    G T   L
Sbjct: 59  STVEKLYAAGAGVLVAERGGHTALHL 84

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  143 bits (363), Expect = 7e-39
 Identities = 37/194 (19%), Positives = 64/194 (32%), Gaps = 8/194 (4%)

Query: 531 FVEAGQDVNEPDSET---VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 587
            +       +        + LL  AA+   +E+++  + +         +   T LH A 
Sbjct: 4   VLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGI-TALHNAI 62

Query: 588 RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-GM 646
              +   V  LI  GA+    DS G T +H AA    T I   LV  G  +     + G 
Sbjct: 63  CGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGA 122

Query: 647 TALMW-SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
           TA      Y+    D    L     S  + +      AL     A+    ++     + +
Sbjct: 123 TAFEKCDPYREGYADCATYLADVEQSMGLMNS-GAVYALWDYS-AEFGDELSFREGESVT 180

Query: 706 LEIPNAQGLTPFML 719
           +   +    T +  
Sbjct: 181 VLRRDGPEETDWWW 194

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  137 bits (346), Expect = 1e-36
 Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 8/170 (4%)

Query: 530 QFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ 589
           Q V+   D ++P+ E +T LH A       I+ + I+ GA V++       TPLH A   
Sbjct: 39  QAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGW-TPLHCAASC 97

Query: 590 GHLDSVVLLIQHGADPTLMD-SEGSTCIHQAAQF--GHTRIVAYLVAKGINVNLQDRNGM 646
                 + L+QHGA       S+G+T   +   +  G+     YL     ++ L +   +
Sbjct: 98  NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAV 157

Query: 647 TALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 696
            AL   + +    D          +   +D         WA         
Sbjct: 158 YALWDYSAE--FGDELSFREGESVTVLRRDG-PEETDWWWAAL-HGQEGY 203

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  129 bits (327), Expect = 5e-34
 Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 5/160 (3%)

Query: 1   MKYFISQGAIVDAI--GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ 58
           M+  + +                 L  A   G L+ V   ++   DP+  + EG T +H 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 59  AAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 118
           A    +  IV +L+  G NVN  D +G T L  +A           L+  GA+       
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN-DTVICMALVQHGAAIFATTLS 119

Query: 119 HGNVALHWAIYAKN-HVAITT-LVSHTSSLEIPNAQGLTP 156
            G  A       +  +    T L     S+ + N+  +  
Sbjct: 120 DGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA 159

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  129 bits (327), Expect = 5e-34
 Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 5/160 (3%)

Query: 561 MKYFISQGAIVDAI--GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ 618
           M+  + +                 L  A   G L+ V   ++   DP+  + EG T +H 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 619 AAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 678
           A    +  IV +L+  G NVN  D +G T L  +A           L+  GA+       
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN-DTVICMALVQHGAAIFATTLS 119

Query: 679 HGNVALHWAIYAKN-HVAITT-LVSHTSSLEIPNAQGLTP 716
            G  A       +  +    T L     S+ + N+  +  
Sbjct: 120 DGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA 159

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 88.5 bits (220), Expect = 9e-20
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWA--TRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
              +  GA + A      AT        R+G+ D    L        LM+S     +   
Sbjct: 104 MALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY 163

Query: 60  AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 95
           +       +++   + + V  +D    T   W+A  
Sbjct: 164 SA-EFGDELSFREGESVTVLRRDGPEETDWWWAALH 198

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 14/117 (11%), Positives = 21/117 (17%), Gaps = 6/117 (5%)

Query: 532 VEAGQDVNEPDSET-VTLLHWAAI--NNRIEIMKYFISQGAIVDAIGGDLQATPLHWATR 588
           V+ G  +         T             +   Y       +  +        L   + 
Sbjct: 107 VQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAV-YALWDYS- 164

Query: 589 QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVA-YLVAKGINVNLQDRN 644
               D +             D    T    AA  G    V          V  Q   
Sbjct: 165 AEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSK 221

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 40/129 (31%)

Query: 35  VVLLIQHGADPTLMDSE---GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 91
           +  +++    P             +  AA  G   +V   V +  + +  +  G+TAL  
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITAL-- 58

Query: 92  SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 150
                                            H AI    + +I   L++  +++  P+
Sbjct: 59  ---------------------------------HNAIC-GANYSIVDFLITAGANVNSPD 84

Query: 151 AQGLTPFML 159
           + G TP   
Sbjct: 85  SHGWTPLHC 93

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 11/85 (12%), Positives = 15/85 (17%), Gaps = 3/85 (3%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
             Y       +  +        L   +     D +             D    T    AA
Sbjct: 139 ATYLADVEQSMGLMNSGAV-YALWDYS-AEFGDELSFREGESVTVLRRDGPEETDWWWAA 196

Query: 61  QFGHTRIVA-YLVAKGINVNLQDRN 84
             G    V          V  Q   
Sbjct: 197 LHGQEGYVPRNYFGLFPRVKPQRSK 221

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  141 bits (357), Expect = 1e-38
 Identities = 33/167 (19%), Positives = 55/167 (32%), Gaps = 10/167 (5%)

Query: 538 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL 597
            +    E          +             A V +       TP   A R+    ++  
Sbjct: 7   GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY----ETPWWTAARKADEQALSQ 62

Query: 598 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYKV 656
           L+    D   +D  G T +   A  G  + V  L   G +++ +D R G+TAL  +A  V
Sbjct: 63  LL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 121

Query: 657 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
              +    L+  GA   ++D+  G  AL  A             +  
Sbjct: 122 -RPEVVEALVELGADIEVEDE-RGLTALELARE-ILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  135 bits (342), Expect = 1e-36
 Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 7/140 (5%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
                DV        T    AA     + +   +     VDA+  +   T L +    G 
Sbjct: 34  SYIAADVVSEYE---TPWWTAARKADEQALSQLLE-DRDVDAVDEN-GRTALLFVAGLGS 88

Query: 592 LDSVVLLIQHGADPTLMDSE-GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 650
              V LL + GAD    D   G T +H AA +    +V  LV  G ++ ++D  G+TAL 
Sbjct: 89  DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALE 148

Query: 651 WSAYKVFSLDPTRLLITFGA 670
            +   +    P    + FG 
Sbjct: 149 LAREIL-KTTPKGNPMQFGR 167

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  121 bits (306), Expect = 7e-32
 Identities = 25/109 (22%), Positives = 41/109 (37%)

Query: 534 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 593
             +DV+  D    T L + A     + ++     GA +D        T LH A      +
Sbjct: 65  EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE 124

Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 642
            V  L++ GAD  + D  G T +  A +   T      +  G  + L+ 
Sbjct: 125 VVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  119 bits (302), Expect = 3e-31
 Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 10/143 (6%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
                  A V +       TP   A R+    ++  L+    D   +D  G T +   A 
Sbjct: 31  VPSSYIAADVVSEY----ETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAG 85

Query: 62  FGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
            G  + V  L   G +++ +D R G+TAL  +A  V   +    L+  GA   ++D+  G
Sbjct: 86  LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV-RPEVVEALVELGADIEVEDE-RG 143

Query: 121 NVALHWAIYAKNHVAIT-TLVSH 142
             AL  A             +  
Sbjct: 144 LTALELARE-ILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  117 bits (297), Expect = 1e-30
 Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 8/154 (5%)

Query: 7   QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR 66
              I     G+  A       + GH  S V      AD   + SE  T    AA+    +
Sbjct: 3   NKIIGSRTAGE-GAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQ 58

Query: 67  IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 126
            ++ L+ +  +V+  D NG TAL++ A    S    RLL   GA    +D   G  ALH 
Sbjct: 59  ALSQLL-EDRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHRDMRGGLTALHM 116

Query: 127 AIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
           A        +   LV   + +E+ + +GLT   L
Sbjct: 117 AAG-YVRPEVVEALVELGADIEVEDERGLTALEL 149

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  117 bits (297), Expect = 1e-30
 Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 8/154 (5%)

Query: 567 QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR 626
              I     G+  A       + GH  S V      AD   + SE  T    AA+    +
Sbjct: 3   NKIIGSRTAGE-GAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQ 58

Query: 627 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 686
            ++ L+ +  +V+  D NG TAL++ A    S    RLL   GA    +D   G  ALH 
Sbjct: 59  ALSQLL-EDRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHRDMRGGLTALHM 116

Query: 687 AIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
           A        +   LV   + +E+ + +GLT   L
Sbjct: 117 AAG-YVRPEVVEALVELGADIEVEDERGLTALEL 149

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  107 bits (271), Expect = 5e-27
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 4/111 (3%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE-GSTCIHQA 59
           +   +     VDA+  +   T L +    G    V LL + GAD    D   G T +H A
Sbjct: 60  LSQLLE-DRDVDAVDEN-GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117

Query: 60  AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
           A +    +V  LV  G ++ ++D  G+TAL  +   +    P    + FG 
Sbjct: 118 AGYVRPEVVEALVELGADIEVEDERGLTALELAREIL-KTTPKGNPMQFGR 167

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 90.6 bits (226), Expect = 4e-21
 Identities = 19/81 (23%), Positives = 30/81 (37%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           +     GA +D        T LH A      + V  L++ GAD  + D  G T +  A +
Sbjct: 93  RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152

Query: 62  FGHTRIVAYLVAKGINVNLQD 82
              T      +  G  + L+ 
Sbjct: 153 ILKTTPKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 9/42 (21%), Positives = 14/42 (33%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA 573
           VE G D+   D   +T L  A    +       +  G  +  
Sbjct: 130 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 171

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  141 bits (357), Expect = 4e-38
 Identities = 37/195 (18%), Positives = 67/195 (34%), Gaps = 29/195 (14%)

Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQ----ATPLHWATRQG 590
           G +V++  +   T LH AA+ + +E     +     +       +     T LH A    
Sbjct: 27  GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQ 86

Query: 591 HLDSVVLLIQHGAD-------------PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 637
           +++ V  L+  GA              P  +   G   +  AA  G   IV  L+  G +
Sbjct: 87  NVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD 146

Query: 638 VNLQDRNGMTALMWSAY---KVFSLDPTRLLITFGA------STTIQDKIHGNVALHWAI 688
           +  QD  G T L        K F+     LL+++           + +   G      A 
Sbjct: 147 IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNN-QGLTPFKLAG 205

Query: 689 YAKNHVAIT-TLVSH 702
             + ++ +   L+  
Sbjct: 206 V-EGNIVMFQHLMQK 219

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  136 bits (346), Expect = 1e-36
 Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 34/203 (16%)

Query: 547 TLLHWAAINNRIE-IMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD- 604
           + L  AA  N ++ + K    +G  V   G   + T LH A    +L++ ++L++   + 
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGE-TALHIAALYDNLEAAMVLMEAAPEL 63

Query: 605 ----PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-------------GMT 647
                T    EG T +H A    +  +V  L+A+G +V+ +                G  
Sbjct: 64  VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123

Query: 648 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-----LVSH 702
            L ++A    S +  RLLI  GA    QD   GN  LH  I  + +          L+S+
Sbjct: 124 PLSFAACV-GSEEIVRLLIEHGADIRAQDS-LGNTVLHILIL-QPNKTFACQMYNLLLSY 180

Query: 703 ------TSSLEIPNAQGLTPFML 719
                  S   +PN QGLTPF L
Sbjct: 181 DGGDHLKSLELVPNNQGLTPFKL 203

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  118 bits (299), Expect = 3e-30
 Identities = 50/188 (26%), Positives = 76/188 (40%), Gaps = 33/188 (17%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD-----PTLMDSEGSTC 55
            K    +G  V   G   + T LH A    +L++ ++L++   +      T    EG T 
Sbjct: 20  SKLLKFEGCEVHQRGAMGE-TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTA 78

Query: 56  IHQAAQFGHTRIVAYLVAKGINVNLQDRN-------------GMTALMWSAYKVFSLDPT 102
           +H A    +  +V  L+A+G +V+ +                G   L ++A    S +  
Sbjct: 79  LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV-GSEEIV 137

Query: 103 RLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-----LVSH------TSSLEIPNA 151
           RLLI  GA    QD   GN  LH  I  + +          L+S+       S   +PN 
Sbjct: 138 RLLIEHGADIRAQDS-LGNTVLHILIL-QPNKTFACQMYNLLLSYDGGDHLKSLELVPNN 195

Query: 152 QGLTPFML 159
           QGLTPF L
Sbjct: 196 QGLTPFKL 203

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  111 bits (281), Expect = 7e-28
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 29/168 (17%)

Query: 2   KYFISQGAIVDAIGGDLQ----ATPLHWATRQGHLDSVVLLIQHGAD------------- 44
              +     +       +     T LH A    +++ V  L+  GA              
Sbjct: 54  MVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYR 113

Query: 45  PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY---KVFSLDP 101
           P  +   G   +  AA  G   IV  L+  G ++  QD  G T L        K F+   
Sbjct: 114 PHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQM 173

Query: 102 TRLLITFGA------STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 142
             LL+++           + +   G      A   + ++ +   L+  
Sbjct: 174 YNLLLSYDGGDHLKSLELVPNN-QGLTPFKLAGV-EGNIVMFQHLMQK 219

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  101 bits (254), Expect = 2e-24
 Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 21/162 (12%)

Query: 21  TPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV- 78
           +PL  A ++  + ++  LL   G +     + G T +H AA + +      L+     + 
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 79  ----NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK------------IHGNV 122
                 +   G TAL  +     +++  R L+  GAS + +               +G  
Sbjct: 65  FEPMTSELYEGQTALHIAVINQ-NVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123

Query: 123 ALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 163
            L +A        I   L+ H + +   ++ G T   +L   
Sbjct: 124 PLSFAAC-VGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQ 164

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  101 bits (254), Expect = 2e-24
 Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 21/162 (12%)

Query: 581 TPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV- 638
           +PL  A ++  + ++  LL   G +     + G T +H AA + +      L+     + 
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 639 ----NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK------------IHGNV 682
                 +   G TAL  +     +++  R L+  GAS + +               +G  
Sbjct: 65  FEPMTSELYEGQTALHIAVINQ-NVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123

Query: 683 ALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 723
            L +A        I   L+ H + +   ++ G T   +L   
Sbjct: 124 PLSFAAC-VGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQ 164

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 72.6 bits (179), Expect = 2e-14
 Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 9/83 (10%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEI----MKYFISQGAIVDAIGGDLQA-----TP 582
           +E G D+   DS   T+LH   +              +S          +L       TP
Sbjct: 141 IEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP 200

Query: 583 LHWATRQGHLDSVVLLIQHGADP 605
              A  +G++     L+Q     
Sbjct: 201 FKLAGVEGNIVMFQHLMQKRKHI 223

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 10/98 (10%)

Query: 52  GSTCIHQAAQFGHTRIVA-YLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
             + +  AA+    + ++  L  +G  V+ +   G TAL  +A    +L+   +L+    
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALY-DNLEAAMVLMEAAP 61

Query: 111 -----STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 142
                  T +    G  ALH A+    +V +   L++ 
Sbjct: 62  ELVFEPMTSELY-EGQTALHIAVI-NQNVNLVRALLAR 97

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 10/98 (10%)

Query: 612 GSTCIHQAAQFGHTRIVA-YLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 670
             + +  AA+    + ++  L  +G  V+ +   G TAL  +A    +L+   +L+    
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALY-DNLEAAMVLMEAAP 61

Query: 671 -----STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
                  T +    G  ALH A+    +V +   L++ 
Sbjct: 62  ELVFEPMTSELY-EGQTALHIAVI-NQNVNLVRALLAR 97

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  140 bits (354), Expect = 2e-37
 Identities = 38/210 (18%), Positives = 66/210 (31%), Gaps = 19/210 (9%)

Query: 539 NEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLL 598
           +    E          +             A V +       TP   A R+    ++  L
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY----ETPWWTAARKADEQALSQL 64

Query: 599 IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYKVF 657
           +    D   +D  G T +   A  G  + V  L   G +++ +D R G+TAL  +A  V 
Sbjct: 65  L-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV- 122

Query: 658 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 716
             +    L+  GA   ++D+  G  AL  A             +     +     + +  
Sbjct: 123 RPEVVEALVELGADIEVEDE-RGLTALELARE-ILKTTPKGNPMQFGRRI---GLEKVIN 177

Query: 717 FMLLEENIGAPWLGKATVDKITELKDHYNT 746
            +             A VD+I E +     
Sbjct: 178 VLE------GQVFEYAEVDEIVEKRGKGKD 201

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  135 bits (341), Expect = 8e-36
 Identities = 33/184 (17%), Positives = 57/184 (30%), Gaps = 27/184 (14%)

Query: 534 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 593
             +DV+  D    T L + A     + ++     GA +D        T LH A      +
Sbjct: 66  EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE 125

Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDR---------- 643
            V  L++ GAD  + D  G T +  A +   T      +  G  + L+            
Sbjct: 126 VVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE 185

Query: 644 ------------NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAK 691
                        G        +K    D   +     A    +D       L +A+ A+
Sbjct: 186 YAEVDEIVEKRGKGKDVEYLVRWKD-GGDCEWVKGVHVAEDVAKDY---EDGLEYAV-AE 240

Query: 692 NHVA 695
           + + 
Sbjct: 241 SVIG 244

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  119 bits (301), Expect = 2e-30
 Identities = 37/187 (19%), Positives = 63/187 (33%), Gaps = 19/187 (10%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
                  A V +       TP   A R+    ++  L+    D   +D  G T +   A 
Sbjct: 32  VPSSYIAADVVSEY----ETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAG 86

Query: 62  FGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
            G  + V  L   G +++ +D R G+TAL  +A  V   +    L+  GA   ++D+  G
Sbjct: 87  LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV-RPEVVEALVELGADIEVEDE-RG 144

Query: 121 NVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE 179
             AL  A             +     +     + +   +             A VD+I E
Sbjct: 145 LTALELARE-ILKTTPKGNPMQFGRRI---GLEKVINVLE------GQVFEYAEVDEIVE 194

Query: 180 LKDHYNT 186
            +     
Sbjct: 195 KRGKGKD 201

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  117 bits (295), Expect = 1e-29
 Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 7/155 (4%)

Query: 10  IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVA 69
           I+ +      A       + GH  S V      AD   + SE  T    AA+    + ++
Sbjct: 6   IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALS 62

Query: 70  YLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIY 129
            L+ +  +V+  D NG TAL++ A    S    RLL   GA    +D   G  ALH A  
Sbjct: 63  QLL-EDRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120

Query: 130 AKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 163
                 +   LV   + +E+ + +GLT   L  E 
Sbjct: 121 -YVRPEVVEALVELGADIEVEDERGLTALELAREI 154

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  117 bits (295), Expect = 1e-29
 Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 7/155 (4%)

Query: 570 IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVA 629
           I+ +      A       + GH  S V      AD   + SE  T    AA+    + ++
Sbjct: 6   IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALS 62

Query: 630 YLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIY 689
            L+ +  +V+  D NG TAL++ A    S    RLL   GA    +D   G  ALH A  
Sbjct: 63  QLL-EDRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120

Query: 690 AKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 723
                 +   LV   + +E+ + +GLT   L  E 
Sbjct: 121 -YVRPEVVEALVELGADIEVEDERGLTALELAREI 154

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  104 bits (262), Expect = 3e-25
 Identities = 27/156 (17%), Positives = 46/156 (29%), Gaps = 27/156 (17%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           +     GA +D        T LH A      + V  L++ GAD  + D  G T +  A +
Sbjct: 94  RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 153

Query: 62  FGHTRIVAYLVAKGINVNLQDR----------------------NGMTALMWSAYKVFSL 99
              T      +  G  + L+                         G        +K    
Sbjct: 154 ILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKD-GG 212

Query: 100 DPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVA 135
           D   +     A    +D       L +A+ A++ + 
Sbjct: 213 DCEWVKGVHVAEDVAKDY---EDGLEYAV-AESVIG 244

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 81.9 bits (203), Expect = 2e-17
 Identities = 13/124 (10%), Positives = 30/124 (24%), Gaps = 14/124 (11%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           VE G D+   D   +T L  A    +       +  G  +       +   +       +
Sbjct: 131 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE----KVINVLEGQVFEY 186

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
            +   ++ + G         G    +                       +D      L +
Sbjct: 187 AEVDEIVEKRGK--------GKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE--DGLEY 236

Query: 652 SAYK 655
           +  +
Sbjct: 237 AVAE 240

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  143 bits (364), Expect = 2e-37
 Identities = 59/212 (27%), Positives = 91/212 (42%), Gaps = 27/212 (12%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEI--------MKYFISQGAIVDAIGGDLQATP 582
                 ++ +P     T+LHW A N+  E          K  I+ GA V+A+  D   TP
Sbjct: 112 ITRESVNIIDPRHNR-TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN-TP 169

Query: 583 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK---GINVN 639
           L  A        V  L++ GADPT+ +    + +HQAA      ++ Y++       ++ 
Sbjct: 170 LMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE 229

Query: 640 LQDRNGMTALMWSAYKVF--SLDPTRLLITFGA--------STTIQDKIHGNVALHWAIY 689
             DRNGMTALM  A+      +   +LL+  GA            +    G  ALH+A  
Sbjct: 230 ELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY-KGRTALHYAAQ 288

Query: 690 AKNHVAIT-TLVSHT-SSLEIPNAQGLTPFML 719
             +++ I   LV    S+ +  +  G TP ML
Sbjct: 289 -VSNMPIVKYLVGEKGSNKDKQDEDGKTPIML 319

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  142 bits (361), Expect = 4e-37
 Identities = 49/187 (26%), Positives = 73/187 (39%), Gaps = 20/187 (10%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQ---GAIVDAIGGDLQATPLHWATR 588
           ++AG D    +    + LH AA N    +M Y ++       ++ +  +   T L     
Sbjct: 186 MKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM-TALMIVAH 244

Query: 589 QGHLDSVV---LLIQHGADPTLM--------DSEGSTCIHQAAQFGHTRIVAYLVA-KGI 636
               D V    LL++ GA               +G T +H AAQ  +  IV YLV  KG 
Sbjct: 245 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS 304

Query: 637 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 696
           N + QD +G T +M +A +   ++    LI  GAS    D    + A   A    NH  I
Sbjct: 305 NKDKQDEDGKTPIMLAAQEG-RIEVVMYLIQQGASVEAVDA-TDHTARQLAQA-NNHHNI 361

Query: 697 T-TLVSH 702
                  
Sbjct: 362 VDIFDRC 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  141 bits (358), Expect = 9e-37
 Identities = 35/209 (16%), Positives = 61/209 (29%), Gaps = 18/209 (8%)

Query: 523 TSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATP 582
            SL +        +  NE    ++        N    +  +  +   I      +     
Sbjct: 39  HSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPE-SPIK 97

Query: 583 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV--------AYLVAK 634
           LH     G       + +   +         T +H  A                   +A 
Sbjct: 98  LHTEA-AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA 155

Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
           G +VN  D +  T LM +            L+  GA  TI +K     ALH A       
Sbjct: 156 GADVNAMDCDENTPLMLAVLAR-RRRLVAYLMKAGADPTIYNK-SERSALHQAAA-NRDF 212

Query: 695 AITT-LVSHTSS---LEIPNAQGLTPFML 719
            +   +++ T     +E  +  G+T  M+
Sbjct: 213 GMMVYMLNSTKLKGDIEELDRNGMTALMI 241

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  128 bits (325), Expect = 2e-32
 Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 12/149 (8%)

Query: 533 EAGQDVNEPDSETVTLLHWAAINN---RIEIMKYFISQGAIVDAIGGDLQA-------TP 582
           +   D+ E D   +T L   A N    ++   K  + +GA VD  G   +        T 
Sbjct: 223 KLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA 282

Query: 583 LHWATRQGHLDSVVLLI-QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ 641
           LH+A +  ++  V  L+ + G++    D +G T I  AAQ G   +V YL+ +G +V   
Sbjct: 283 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV 342

Query: 642 DRNGMTALMWSAYKVFSLDPTRLLITFGA 670
           D    TA   +       +   +      
Sbjct: 343 DATDHTARQLAQAN-NHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  122 bits (309), Expect = 2e-30
 Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 18/173 (10%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           K  I+ GA V+A+  D   TPL  A        V  L++ GADPT+ +    + +HQAA 
Sbjct: 150 KECIAAGADVNAMDCDEN-TPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAA 208

Query: 62  FGHTRIVAYLVAK---GINVNLQDRNGMTALMWSAYKVF--SLDPTRLLITFGA------ 110
                ++ Y++       ++   DRNGMTALM  A+      +   +LL+  GA      
Sbjct: 209 NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG 268

Query: 111 --STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHT-SSLEIPNAQGLTPFML 159
                 +    G  ALH+A    +++ I   LV    S+ +  +  G TP ML
Sbjct: 269 AARKDSEKY-KGRTALHYAAQ-VSNMPIVKYLVGEKGSNKDKQDEDGKTPIML 319

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  115 bits (291), Expect = 6e-28
 Identities = 33/182 (18%), Positives = 60/182 (32%), Gaps = 28/182 (15%)

Query: 1   MKYFISQGA-IVDAIGGDLQATPLHWATRQGHLDSVVLLIQH--------GADPTLMDSE 51
            +    +   I+D        T LHW       +    LI H        GAD   MD +
Sbjct: 109 TEPITRESVNIIDPRHNR---TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD 165

Query: 52  GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI---TF 108
            +T +  A      R+VAYL+  G +  + +++  +AL  +A           ++     
Sbjct: 166 ENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN-RDFGMMVYMLNSTKL 224

Query: 109 GASTTIQDKIHGNVALHWAIYAKNHVAITT---LVSH--------TSSLEIPNAQGLTPF 157
                  D+ +G  AL    + +    + +   LV           +  +    +G T  
Sbjct: 225 KGDIEELDR-NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL 283

Query: 158 ML 159
             
Sbjct: 284 HY 285

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  115 bits (291), Expect = 7e-28
 Identities = 30/170 (17%), Positives = 51/170 (30%), Gaps = 18/170 (10%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
            +  +   I      +     LH     G       + +   +         T +H  A 
Sbjct: 78  DFNHTNLQIPTEPEPE-SPIKLHTEA-AGSYAITEPITRESVNII-DPRHNRTVLHWIAS 134

Query: 62  FGHTRIV--------AYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTT 113
                             +A G +VN  D +  T LM +            L+  GA  T
Sbjct: 135 NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLAR-RRRLVAYLMKAGADPT 193

Query: 114 IQDKIHGNVALHWAIYAKNHVAITT-LVSHTSS---LEIPNAQGLTPFML 159
           I +K     ALH A        +   +++ T     +E  +  G+T  M+
Sbjct: 194 IYNK-SERSALHQAAA-NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI 241

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  111 bits (281), Expect = 1e-26
 Identities = 41/158 (25%), Positives = 60/158 (37%), Gaps = 20/158 (12%)

Query: 1   MKYFISQ---GAIVDAIGGDLQATPLHWATRQGHLDSVV---LLIQHGADPTLM------ 48
           M Y ++       ++ +  +   T L         D V    LL++ GA           
Sbjct: 215 MVYMLNSTKLKGDIEELDRNGM-TALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD 273

Query: 49  --DSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLL 105
               +G T +H AAQ  +  IV YLV  KG N + QD +G T +M +A +   ++    L
Sbjct: 274 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG-RIEVVMYL 332

Query: 106 ITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 142
           I  GAS    D    + A   A    NH  I       
Sbjct: 333 IQQGASVEAVDA-TDHTARQLAQA-NNHHNIVDIFDRC 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  105 bits (263), Expect = 2e-24
 Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 9/117 (7%)

Query: 2   KYFISQGAIVDAIGGDLQA-------TPLHWATRQGHLDSVVLLI-QHGADPTLMDSEGS 53
           K  + +GA VD  G   +        T LH+A +  ++  V  L+ + G++    D +G 
Sbjct: 255 KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK 314

Query: 54  TCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
           T I  AAQ G   +V YL+ +G +V   D    TA   +       +   +      
Sbjct: 315 TPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQAN-NHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  104 bits (261), Expect = 5e-24
 Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 10/116 (8%)

Query: 532 VEAGQDVNEPDSETV--------TLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATP 582
           VE G  V+   +           T LH+AA  + + I+KY + + G+  D    D + TP
Sbjct: 258 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK-TP 316

Query: 583 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 638
           +  A ++G ++ V+ LIQ GA    +D+   T    A    H  IV          
Sbjct: 317 IMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 93.9 bits (234), Expect = 1e-20
 Identities = 26/148 (17%), Positives = 40/148 (27%), Gaps = 23/148 (15%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
             L  A+  G++      +QH                Q    G+  +  +          
Sbjct: 39  HSLLEASYDGYIKRQRNELQHY---------SLYPNPQGYGNGNDFLGDFNHTNLQIPTE 89

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 139
            +      L   A    S   T  +     +  I D  H    LHW     +    +  L
Sbjct: 90  PEPESPIKLHTEAAG--SYAITEPITRESVN--IIDPRHNRTVLHWIAS-NSSAEKSEDL 144

Query: 140 VSHTSSLEI-----PNAQ---GLTPFML 159
           + H +   I      NA      TP ML
Sbjct: 145 IVHEAKECIAAGADVNAMDCDENTPLML 172

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 77.3 bits (191), Expect = 3e-15
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 2   KYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           KY + + G+  D    D + TP+  A ++G ++ V+ LIQ GA    +D+   T    A 
Sbjct: 296 KYLVGEKGSNKDKQDEDGK-TPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQ 354

Query: 61  QFGHTRIVAYLVAKGINV 78
              H  IV          
Sbjct: 355 ANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 9/41 (21%), Positives = 14/41 (34%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVD 572
           ++ G  V   D+   T    A  NN   I+  F       +
Sbjct: 333 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  136 bits (345), Expect = 2e-37
 Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 8/158 (5%)

Query: 547 TLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADP 605
             L  AA    ++ ++  + +     DA+      T L      G     + L++ GA P
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRF-GKTALQVMMF-GSTAIALELLKQGASP 61

Query: 606 TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLL 665
            + D+ G++ +H AA+ G    +  LV  G +VN+ D  G   +  +  +         L
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG-HTAVVSFL 120

Query: 666 ITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 702
               +    +D   G   L  A+  +    +   L  H
Sbjct: 121 AA-ESDLHRRDA-RGLTPLELALQ-RGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  130 bits (331), Expect = 2e-35
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
               +  +    T L          I    + QGA  +        +P+H A R G LD+
Sbjct: 26  LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGT-SPVHDAARTGFLDT 83

Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 654
           + +L++HGAD  + D  G+  IH A Q GHT +V++L     +++ +D  G+T L  +  
Sbjct: 84  LKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQ 142

Query: 655 KVFSLDPTRLLI 666
           +  + D   +L 
Sbjct: 143 R-GAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  120 bits (303), Expect = 1e-31
 Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 7/141 (4%)

Query: 21  TPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
             L  A  +G +  V  LL +    P  ++  G T +     FG T I   L+ +G + N
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQGASPN 62

Query: 80  LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT- 138
           +QD +G + +  +A     LD  ++L+  GA   + D   G + +H A+  + H A+ + 
Sbjct: 63  VQDTSGTSPVHDAART-GFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQ-EGHTAVVSF 119

Query: 139 LVSHTSSLEIPNAQGLTPFML 159
           L +  S L   +A+GLTP  L
Sbjct: 120 LAAE-SDLHRRDARGLTPLEL 139

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  117 bits (297), Expect = 8e-31
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 7/139 (5%)

Query: 5   ISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH 64
             +    DA+      T L      G     + L++ GA P + D+ G++ +H AA+ G 
Sbjct: 23  HRELVHPDALNRF-GKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80

Query: 65  TRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 124
              +  LV  G +VN+ D  G   +  +  +         L    +    +D   G   L
Sbjct: 81  LDTLKVLVEHGADVNVPDGTGALPIHLAVQEG-HTAVVSFLAA-ESDLHRRDA-RGLTPL 137

Query: 125 HWAIYAKNHVAITT-LVSH 142
             A+  +    +   L  H
Sbjct: 138 ELALQ-RGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  100 bits (251), Expect = 9e-25
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 2/101 (1%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           ++ G   N  D+   + +H AA    ++ +K  +  GA V+   G     P+H A ++GH
Sbjct: 55  LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGA-LPIHLAVQEGH 113

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 632
              V  L    +D    D+ G T +  A Q G   +V  L 
Sbjct: 114 TAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 82.5 bits (205), Expect = 1e-18
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 52  GSTCIHQAAQFGHTRIVAYLV-AKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
               +  AA  G  + V  L+  + ++ +  +R G TAL    +   S      L+  GA
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG--STAIALELLKQGA 59

Query: 111 STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
           S  +QD   G   +H A      +     LV H + + +P+  G  P  L
Sbjct: 60  SPNVQDT-SGTSPVHDAAR-TGFLDTLKVLVEHGADVNVPDGTGALPIHL 107

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 82.5 bits (205), Expect = 1e-18
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 612 GSTCIHQAAQFGHTRIVAYLV-AKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 670
               +  AA  G  + V  L+  + ++ +  +R G TAL    +   S      L+  GA
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG--STAIALELLKQGA 59

Query: 671 STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
           S  +QD   G   +H A      +     LV H + + +P+  G  P  L
Sbjct: 60  SPNVQDT-SGTSPVHDAAR-TGFLDTLKVLVEHGADVNVPDGTGALPIHL 107

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 70.9 bits (175), Expect = 2e-14
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           K  +  GA V+   G     P+H A ++GH   V  L    +D    D+ G T +  A Q
Sbjct: 85  KVLVEHGADVNVPDGTGA-LPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQ 142

Query: 62  FGHTRIVAYLV 72
            G   +V  L 
Sbjct: 143 RGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 40.1 bits (95), Expect = 7e-04
 Identities = 6/34 (17%), Positives = 13/34 (38%)

Query: 534 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQ 567
           A  D++  D+  +T L  A      +++      
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  134 bits (340), Expect = 5e-37
 Identities = 51/124 (41%), Positives = 71/124 (57%), Gaps = 2/124 (1%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
           T LH AA N  +E++K  +  GA V+A   +   TPLH A R GHL+ V LL++ GAD  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 666
             D  G T +H AA+ GH  +V  L+  G +VN +D+NG T L  +A     L+  +LL+
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG-HLEVVKLLL 121

Query: 667 TFGA 670
             GA
Sbjct: 122 EAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  117 bits (295), Expect = 6e-31
 Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
           TPLH A R GHL+ V LL++ GAD    D  G T +H AA+ GH  +V  L+  G +VN 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 139
           +D+NG T L  +A     L+  +LL+  GA    +DK +G   LH A     H+ +   L
Sbjct: 64  KDKNGRTPLHLAARNG-HLEVVKLLLEAGADVNAKDK-NGRTPLHLAAR-NGHLEVVKLL 120

Query: 140 VSH 142
           +  
Sbjct: 121 LEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  113 bits (286), Expect = 8e-30
 Identities = 45/104 (43%), Positives = 60/104 (57%), Gaps = 1/104 (0%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           +EAG DVN  D    T LH AA N  +E++K  +  GA V+A   + + TPLH A R GH
Sbjct: 22  LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGH 80

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 635
           L+ V LL++ GAD    D  G T +H AA+ GH  +V  L+  G
Sbjct: 81  LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  112 bits (283), Expect = 2e-29
 Identities = 44/109 (40%), Positives = 61/109 (55%), Gaps = 2/109 (1%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           K  +  GA V+A   +   TPLH A R GHL+ V LL++ GAD    D  G T +H AA+
Sbjct: 19  KLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
            GH  +V  L+  G +VN +D+NG T L  +A     L+  +LL+  GA
Sbjct: 78  NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG-HLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 78.5 bits (195), Expect = 2e-17
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 4/106 (3%)

Query: 52  GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 111
           G T +H AA+ GH  +V  L+  G +VN +D+NG T L  +A     L+  +LL+  GA 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGAD 60

Query: 112 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
              +DK +G   LH A     H+ +   L+   + +   +  G TP
Sbjct: 61  VNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGRTP 104

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 78.5 bits (195), Expect = 2e-17
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 4/106 (3%)

Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
           G T +H AA+ GH  +V  L+  G +VN +D+NG T L  +A     L+  +LL+  GA 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGAD 60

Query: 672 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 716
              +DK +G   LH A     H+ +   L+   + +   +  G TP
Sbjct: 61  VNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGRTP 104

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 47.3 bits (114), Expect = 1e-06
 Identities = 17/38 (44%), Positives = 22/38 (57%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA 569
           +EAG DVN  D    T LH AA N  +E++K  +  GA
Sbjct: 88  LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 84  NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 142
           NG T L  +A     L+  +LL+  GA    +DK +G   LH A     H+ +   L+  
Sbjct: 1   NGRTPLHLAARNG-HLEVVKLLLEAGADVNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEA 57

Query: 143 TSSLEIPNAQGLTPFML 159
            + +   +  G TP  L
Sbjct: 58  GADVNAKDKNGRTPLHL 74

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 644 NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
           NG T L  +A     L+  +LL+  GA    +DK +G   LH A     H+ +   L+  
Sbjct: 1   NGRTPLHLAARNG-HLEVVKLLLEAGADVNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEA 57

Query: 703 TSSLEIPNAQGLTPFML 719
            + +   +  G TP  L
Sbjct: 58  GADVNAKDKNGRTPLHL 74

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  131 bits (332), Expect = 4e-36
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 5/112 (4%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGHLDSVVLLIQHGAD 604
               WA  N  ++ +K ++++G  V+    GG     PLH+A   G L+ +  L+  GAD
Sbjct: 9   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGR---KPLHYAADCGQLEILEFLLLKGAD 65

Query: 605 PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 656
               D    T +  A   GH   V  L++KG +  ++  +G+TA   +  + 
Sbjct: 66  INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA 117

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  116 bits (293), Expect = 8e-31
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
               WA + G LD V   +  G D       G   +H AA  G   I+ +L+ KG ++N 
Sbjct: 9   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 136
            D++ +T L+ + Y+   +   +LL++ GA  T++    G  A       +   A+
Sbjct: 69  PDKHHITPLLSAVYEG-HVSCVKLLLSKGADKTVKGP-DGLTAFEATDN-QAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  116 bits (293), Expect = 8e-31
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%)

Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
               WA + G LD V   +  G D       G   +H AA  G   I+ +L+ KG ++N 
Sbjct: 9   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68

Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 696
            D++ +T L+ + Y+   +   +LL++ GA  T++    G  A       +   A+
Sbjct: 69  PDKHHITPLLSAVYEG-HVSCVKLLLSKGADKTVKGP-DGLTAFEATDN-QAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  109 bits (274), Expect = 3e-28
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 2/101 (1%)

Query: 528 KYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 587
           K  +V  G+DVN         LH+AA   ++EI+++ + +GA ++A       TPL  A 
Sbjct: 24  KD-YVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH-HITPLLSAV 81

Query: 588 RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 628
            +GH+  V LL+  GAD T+   +G T            ++
Sbjct: 82  YEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  109 bits (274), Expect = 3e-28
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 2   KYFISQGAIVDA--IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
           K ++++G  V+    GG     PLH+A   G L+ +  L+  GAD    D    T +  A
Sbjct: 24  KDYVAKGEDVNRTLEGGR---KPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA 80

Query: 60  AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 96
              GH   V  L++KG +  ++  +G+TA   +  + 
Sbjct: 81  VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA 117

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 85.9 bits (214), Expect = 3e-20
 Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 4/113 (3%)

Query: 48  MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 107
           + S        A + G    V   VAKG +VN     G   L ++A     L+    L+ 
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-GQLEILEFLLL 61

Query: 108 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 159
            GA     DK H    L  A+Y + HV+    L+S  +   +    GLT F  
Sbjct: 62  KGADINAPDK-HHITPLLSAVY-EGHVSCVKLLLSKGADKTVKGPDGLTAFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 85.9 bits (214), Expect = 3e-20
 Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 4/113 (3%)

Query: 608 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 667
           + S        A + G    V   VAKG +VN     G   L ++A     L+    L+ 
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-GQLEILEFLLL 61

Query: 668 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
            GA     DK H    L  A+Y + HV+    L+S  +   +    GLT F  
Sbjct: 62  KGADINAPDK-HHITPLLSAVY-EGHVSCVKLLLSKGADKTVKGPDGLTAFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 77.1 bits (191), Expect = 5e-17
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +++ + +GA ++A       TPL  A  +GH+  V LL+  GAD T+   +G T      
Sbjct: 56  LEFLLLKGADINAPDKH-HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114

Query: 61  QFGHTRIV 68
                 ++
Sbjct: 115 NQAIKALL 122

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  131 bits (333), Expect = 5e-36
 Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 7/141 (4%)

Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGHL 592
           G D    +    TLLH A+I   I  ++Y +  G+  +     G    TPLH A   GHL
Sbjct: 1   GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW---TPLHEACNHGHL 56

Query: 593 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 652
             V LL+QH A       +  + +H AA+ GH  IV  L++ G + N  +  G+  + ++
Sbjct: 57  KVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYT 116

Query: 653 AYKVFSLDPTRLLITFGASTT 673
             +        L     +S+ 
Sbjct: 117 DDES-MKSLLLLPEKNESSSA 136

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  118 bits (299), Expect = 2e-31
 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
           T LH A+ +G + SV  L+Q+G+DP + D  G T +H+A   GH ++V  L+     VN 
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL 139
                 + L  +A     +D  +LL+++GAS    +   G   + +    ++  ++  L
Sbjct: 72  TGYQNDSPLHDAAKN-GHVDIVKLLLSYGASRNAVNI-FGLRPVDYTDD-ESMKSLLLL 127

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  118 bits (299), Expect = 2e-31
 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
           T LH A+ +G + SV  L+Q+G+DP + D  G T +H+A   GH ++V  L+     VN 
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71

Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL 699
                 + L  +A     +D  +LL+++GAS    +   G   + +    ++  ++  L
Sbjct: 72  TGYQNDSPLHDAAKN-GHVDIVKLLLSYGASRNAVNI-FGLRPVDYTDD-ESMKSLLLL 127

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  109 bits (275), Expect = 4e-28
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           ++ G D N  D    T LH A  +  +++++  +   A+V+  G     +PLH A + GH
Sbjct: 30  LQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQND-SPLHDAAKNGH 88

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 635
           +D V LL+ +GA    ++  G   +          ++       
Sbjct: 89  VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  105 bits (264), Expect = 9e-27
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 6/115 (5%)

Query: 1   MKYFISQGAIVDA--IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ 58
           ++Y +  G+  +     G    TPLH A   GHL  V LL+QH A       +  + +H 
Sbjct: 26  VEYLLQNGSDPNVKDHAGW---TPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHD 82

Query: 59  AAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTT 113
           AA+ GH  IV  L++ G + N  +  G+  + ++  +        L     +S+ 
Sbjct: 83  AAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDES-MKSLLLLPEKNESSSA 136

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 82.9 bits (206), Expect = 8e-19
 Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 5/119 (4%)

Query: 42  GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 101
           G DP   +  G T +H A+  G    V YL+  G + N++D  G T L  +      L  
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKV 58

Query: 102 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTPFML 159
             LL+   A          +  LH A     HV I   L+S+ +S    N  GL P   
Sbjct: 59  VELLLQHKALVNTTGY-QNDSPLHDAAK-NGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 82.9 bits (206), Expect = 8e-19
 Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 5/119 (4%)

Query: 602 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 661
           G DP   +  G T +H A+  G    V YL+  G + N++D  G T L  +      L  
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKV 58

Query: 662 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTPFML 719
             LL+   A          +  LH A     HV I   L+S+ +S    N  GL P   
Sbjct: 59  VELLLQHKALVNTTGY-QNDSPLHDAAK-NGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 40.1 bits (95), Expect = 6e-04
 Identities = 2/39 (5%), Positives = 11/39 (28%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI 570
           +  G   N  +   +  + +    +   ++       + 
Sbjct: 96  LSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  129 bits (326), Expect = 5e-35
 Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 9/132 (6%)

Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
           G D+ +        L  AA   + + ++  ++ GA V+A       TPL+ AT  GHL+ 
Sbjct: 11  GSDLGKK-------LLEAARAGQDDEVRILMANGADVNAKDEYGL-TPLYLATAHGHLEI 62

Query: 595 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 654
           V +L+++GAD   +D+ G T +H AA  GH  I   L+  G +VN QD+ G TA   S  
Sbjct: 63  VEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIG 122

Query: 655 KVFSLDPTRLLI 666
              + D   +L 
Sbjct: 123 N-GNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  112 bits (284), Expect = 2e-29
 Identities = 42/138 (30%), Positives = 59/138 (42%), Gaps = 6/138 (4%)

Query: 7   QGAIVDAI-GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHT 65
           +G+      G DL    L  A R G  D V +L+ +GAD    D  G T ++ A   GH 
Sbjct: 2   RGSHHHHHHGSDLG-KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHL 60

Query: 66  RIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALH 125
            IV  L+  G +VN  D  G T L  +A+    L+   +L+  GA    QDK  G  A  
Sbjct: 61  EIVEVLLKNGADVNAVDAIGFTPLHLAAFI-GHLEIAEVLLKHGADVNAQDK-FGKTAFD 118

Query: 126 WAIYAKNHVAIT-TLVSH 142
            +I    +  +   L   
Sbjct: 119 ISIG-NGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  104 bits (261), Expect = 3e-26
 Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 2/105 (1%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           +  ++ GA V+A       TPL+ AT  GHL+ V +L+++GAD   +D+ G T +H AA 
Sbjct: 31  RILMANGADVNAKDEYGL-TPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF 89

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 106
            GH  I   L+  G +VN QD+ G TA   S     + D   +L 
Sbjct: 90  IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGN-GNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 73.6 bits (182), Expect = 1e-15
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           ++ G DVN  D+   T LH AA    +EI +  +  GA V+A     + T    +   G+
Sbjct: 67  LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGK-TAFDISIGNGN 125

Query: 592 LDSVVLLIQH 601
            D   +L + 
Sbjct: 126 EDLAEILQKL 135

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  125 bits (317), Expect = 2e-33
 Identities = 27/170 (15%), Positives = 51/170 (30%), Gaps = 15/170 (8%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGG--DLQATPLHWATRQGHLDSVVLLIQHGAD 604
             +  AA+    E       +G          ++    L     +      + LI  GAD
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67

Query: 605 PTLMDSEGSTCIHQAAQFGHTRIVA------YLVAKGINVNLQDRNGMTALMWSAYKVFS 658
                 EG+T      Q G   I          + KG ++    +     +  + +  F 
Sbjct: 68  IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFV 127

Query: 659 LDPTR------LLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 702
            +         +    G    I+DK  G  AL +    +  +A+  +  +
Sbjct: 128 DENEMIPLYKLIFSQSGLQLLIKDK-WGLTALEFVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  110 bits (278), Expect = 5e-28
 Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 14/126 (11%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNR------IEIMKYFISQGAIVDAIGGDLQATPLHW 585
           +  G D+     E  TL                E+ K F+ +GA + A+        +  
Sbjct: 62  INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKP-YKIVVFK 120

Query: 586 ATRQGHLDSV-------VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 638
                 +D         ++  Q G    + D  G T +    +      +  +       
Sbjct: 121 NIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKY 180

Query: 639 NLQDRN 644
           NL++ +
Sbjct: 181 NLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  110 bits (276), Expect = 8e-28
 Identities = 24/156 (15%), Positives = 46/156 (29%), Gaps = 15/156 (9%)

Query: 1   MKYFISQGAIVDAIGG--DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ 58
                 +G          ++    L     +      + LI  GAD      EG+T    
Sbjct: 22  FLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFP 81

Query: 59  AAQFGHTRIVA------YLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTR------LLI 106
             Q G   I          + KG ++    +     +  + +  F  +         +  
Sbjct: 82  LFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFS 141

Query: 107 TFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 142
             G    I+DK  G  AL +    +  +A+  +  +
Sbjct: 142 QSGLQLLIKDK-WGLTALEFVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  108 bits (271), Expect = 3e-27
 Identities = 21/155 (13%), Positives = 44/155 (28%), Gaps = 18/155 (11%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTL---MDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 77
             +  A   G  +  + L + G +        +     +         +I  +L+ KG +
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67

Query: 78  VNLQDRNGMTALMWSAYK-----VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN 132
           +  + + G T               + +  ++ +  GA  T   K    + +   I+   
Sbjct: 68  IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYK-PYKIVVFKNIF-NY 125

Query: 133 HVAITT--------LVSHTSSLEIPNAQGLTPFML 159
            V                   L I +  GLT    
Sbjct: 126 FVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 87.8 bits (218), Expect = 5e-20
 Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 8/91 (8%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSV-------VLLIQHGADPTLMDSEGS 53
            K F+ +GA + A+        +        +D         ++  Q G    + D  G 
Sbjct: 97  CKIFLEKGADITALYKP-YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGL 155

Query: 54  TCIHQAAQFGHTRIVAYLVAKGINVNLQDRN 84
           T +    +      +  +       NL++ +
Sbjct: 156 TALEFVKRCQKPIALKMMEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 7/46 (15%), Positives = 15/46 (32%)

Query: 528 KYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA 573
           K  F ++G  +   D   +T L +     +   +K         + 
Sbjct: 137 KLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNL 182

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  121 bits (306), Expect = 1e-32
 Identities = 41/103 (39%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
           T LH AA N   E +K  +S+GA V+A   D   TPLH A + GH + V LL+  GAD  
Sbjct: 11  TPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLAKGADVN 69

Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
               +G+T  H A + GH  IV  L AKG +VN +        
Sbjct: 70  ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  109 bits (276), Expect = 1e-28
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 2/105 (1%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
           TPLH A + GH + V  L+  GAD      +G+T +H AA+ GH  IV  L+AKG +VN 
Sbjct: 11  TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALH 125
           + ++G T    +       +  +LL   GA    +     +   H
Sbjct: 71  RSKDGNTPEHLAKKNG-HHEIVKLLDAKGADVNARSW-GSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  109 bits (276), Expect = 1e-28
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 2/105 (1%)

Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
           TPLH A + GH + V  L+  GAD      +G+T +H AA+ GH  IV  L+AKG +VN 
Sbjct: 11  TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70

Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALH 685
           + ++G T    +       +  +LL   GA    +     +   H
Sbjct: 71  RSKDGNTPEHLAKKNG-HHEIVKLLDAKGADVNARSW-GSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 99.4 bits (249), Expect = 6e-25
 Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           K  +S+GA V+A   D   TPLH A + GH + V LL+  GAD      +G+T  H A +
Sbjct: 26  KKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTAL 89
            GH  IV  L AKG +VN +        
Sbjct: 85  NGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 92.8 bits (232), Expect = 1e-22
 Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           +  G DVN    +  T LH AA N   EI+K  +++GA V+A   D   TP H A + GH
Sbjct: 29  LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGN-TPEHLAKKNGH 87

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQ 618
            + V LL   GAD        S   H 
Sbjct: 88  HEIVKLLDAKGADVNARSWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 82.8 bits (206), Expect = 4e-19
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 6/116 (5%)

Query: 42  GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 101
           G        +G+T +H AA+ GH   V  L++KG +VN + ++G T L  +A      + 
Sbjct: 1   GHM--WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN-GHAEI 57

Query: 102 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
            +LL+  GA    + K  GN   H A     H  I   L +  + +   +      
Sbjct: 58  VKLLLAKGADVNARSK-DGNTPEHLAKK-NGHHEIVKLLDAKGADVNARSWGSSHH 111

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 82.8 bits (206), Expect = 4e-19
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 6/116 (5%)

Query: 602 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 661
           G        +G+T +H AA+ GH   V  L++KG +VN + ++G T L  +A      + 
Sbjct: 1   GHM--WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN-GHAEI 57

Query: 662 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 716
            +LL+  GA    + K  GN   H A     H  I   L +  + +   +      
Sbjct: 58  VKLLLAKGADVNARSK-DGNTPEHLAKK-NGHHEIVKLLDAKGADVNARSWGSSHH 111

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 62.0 bits (152), Expect = 8e-12
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ 58
           K  +++GA V+A   D   TP H A + GH + V LL   GAD        S   H 
Sbjct: 59  KLLLAKGADVNARSKDGN-TPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHHH 114

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  120 bits (303), Expect = 2e-30
 Identities = 35/196 (17%), Positives = 57/196 (29%), Gaps = 50/196 (25%)

Query: 534 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQA----------- 580
                 +   +  T LH A     + ++   +  GA V A   G   +            
Sbjct: 90  VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGE 149

Query: 581 TPLHWATRQGHLDSVVLLIQHG---ADPTLMDSEGSTCIHQAAQFGHTRI---------- 627
            PL  A     L  V  L+Q+    AD +  DS G+T +H   +     +          
Sbjct: 150 LPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMY 209

Query: 628 ------VAYLVAKGINVNLQDRNGMTALMWSAYK----VFSLDPTRLLITFGASTTIQDK 677
                  A L        + +R G+T L  +A      V        ++           
Sbjct: 210 NEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVL-----AYILQREI------- 257

Query: 678 IHGNVALHWAIYAKNH 693
            H     H A +  +H
Sbjct: 258 -HEPECRHAAAH-HHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  119 bits (301), Expect = 3e-30
 Identities = 43/240 (17%), Positives = 66/240 (27%), Gaps = 56/240 (23%)

Query: 534 AGQDVNEPDSETVTLLHWAAINNRIEIMK-------YFISQGAIVDAIGGDLQATPLHWA 586
                  P       +  A   +  + ++           +    +    +   T L  A
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61

Query: 587 T---RQGHLDSVVLLIQHGAD-----------PTLMDSEGSTCIHQAAQFGHTRIVAYLV 632
                 G  D++ LL+                 T    +G T +H A +  +  +V  LV
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121

Query: 633 AKGINVNLQDRN--------------GMTALMWSAYKVFSLDPTRLLITFG---ASTTIQ 675
             G +V                    G   L  +A     L   + L+      A  + +
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN-QLAIVKFLLQNSWQPADISAR 180

Query: 676 DKIHGNVALHWA-IYAKNHVAITTLV---------------SHTSSLEIPNAQGLTPFML 719
           D   GN  LH     A N V  T  V                     EI N +GLTP  L
Sbjct: 181 DS-VGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL 239

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  104 bits (262), Expect = 4e-25
 Identities = 41/205 (20%), Positives = 60/205 (29%), Gaps = 49/205 (23%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWAT---RQGHLDSVVLLIQHGAD-----------PTL 47
           +    +    +    +   T L  A      G  D++ LL+                 T 
Sbjct: 37  QRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTD 96

Query: 48  MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN--------------GMTALMWSA 93
              +G T +H A +  +  +V  LV  G +V                    G   L  +A
Sbjct: 97  SYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAA 156

Query: 94  YKVFSLDPTRLLITFG---ASTTIQDKIHGNVALHWA-IYAKNHVAITTLV--------- 140
                L   + L+      A  + +D   GN  LH     A N V  T  V         
Sbjct: 157 CTN-QLAIVKFLLQNSWQPADISARDS-VGNTVLHALVEVADNTVDNTKFVTSMYNEILI 214

Query: 141 ------SHTSSLEIPNAQGLTPFML 159
                       EI N +GLTP  L
Sbjct: 215 LGAKLHPTLKLEEITNRKGLTPLAL 239

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 94.5 bits (235), Expect = 2e-21
 Identities = 31/169 (18%), Positives = 49/169 (28%), Gaps = 50/169 (29%)

Query: 1   MKYFISQGAIVDA--IGGDLQA-----------TPLHWATRQGHLDSVVLLIQHG---AD 44
           +   +  GA V A   G   +             PL  A     L  V  L+Q+    AD
Sbjct: 117 VTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD 176

Query: 45  PTLMDSEGSTCIHQAAQFGHTRI----------------VAYLVAKGINVNLQDRNGMTA 88
            +  DS G+T +H   +     +                 A L        + +R G+T 
Sbjct: 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTP 236

Query: 89  LMWSAYK----VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH 133
           L  +A      V        ++            H     H A +  +H
Sbjct: 237 LALAASSGKIGVL-----AYILQREI--------HEPECRHAAAH-HHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 80.2 bits (198), Expect = 1e-16
 Identities = 38/204 (18%), Positives = 60/204 (29%), Gaps = 47/204 (23%)

Query: 21  TPLHWATRQGHLDSVVLLIQ-------HGADPTLMDSE-GSTCIHQA---AQFGHTRIVA 69
             +  A  Q +   +  L+           D    D E G TC+ +A      G    +A
Sbjct: 15  RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74

Query: 70  YLVAKG-----------INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK- 117
            L+               +       G TAL  +  +  ++    LL+  GA        
Sbjct: 75  LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERR-NMTLVTLLVENGADVQAAANG 133

Query: 118 ------------IHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQ---GLTPFMLLE 161
                         G + L  A    N +AI   L+ ++      +A+   G T    L 
Sbjct: 134 DFFKKTKGRPGFYFGELPLSLAAC-TNQLAIVKFLLQNSWQPADISARDSVGNTVLHALV 192

Query: 162 ENIGAPWLGKATVDKITELKDHYN 185
           E          TVD    +   YN
Sbjct: 193 EV------ADNTVDNTKFVTSMYN 210

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.1 bits (138), Expect = 7e-09
 Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 8/61 (13%)

Query: 533 EAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL 592
              +     + + +T L  AA + +I ++ Y + +                H A    H 
Sbjct: 221 PTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP--------ECRHAAAHHHHH 272

Query: 593 D 593
            
Sbjct: 273 H 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 22/123 (17%)

Query: 41  HGADPTLMDSEGSTCIHQAAQFGHT-------RIVAYLVAKGINVNLQDR-NGMTALMWS 92
             A            I  A    +          +     +  +   +D   G T L+ +
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61

Query: 93  AYKVFS--LDPTRLLITFGASTTIQDKI----------HGNVALHWAIYAKNHVAIT-TL 139
              + +   D   LL+     T    +            G  ALH AI  + ++ +   L
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIE-RRNMTLVTLL 120

Query: 140 VSH 142
           V +
Sbjct: 121 VEN 123

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  113 bits (286), Expect = 5e-30
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 4/104 (3%)

Query: 552 AAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE 611
            + ++        + +G+ + +  G      L  A R G  D V +L+ +GAD    D  
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSDLG----KKLLEAARAGQDDEVRILMANGADVAAKDKN 56

Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 655
           GST +H AA+ GH  +V  L+  G +V  QD+ G TA   S   
Sbjct: 57  GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  101 bits (255), Expect = 7e-26
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
              + +G+ + +  G      L  A R G  D V +L+ +GAD    D  GST +H AA+
Sbjct: 11  SGLVPRGSHMGSDLG----KKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAAR 66

Query: 62  FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 95
            GH  +V  L+  G +V  QD+ G TA   S   
Sbjct: 67  NGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  100 bits (252), Expect = 2e-25
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 4/100 (4%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           V  G  +          L  AA   + + ++  ++ GA V A   +   TPLH A R GH
Sbjct: 14  VPRGSHMGSDLG---KKLLEAARAGQDDEVRILMANGADVAAKDKNGS-TPLHLAARNGH 69

Query: 592 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 631
           L+ V LL++ GAD    D  G T    +   G+  +   L
Sbjct: 70  LEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 96.1 bits (240), Expect = 7e-24
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 26  ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 85
            +   H      L+  G+    M S+    + +AA+ G    V  L+A G +V  +D+NG
Sbjct: 1   GSSHHHHHHSSGLVPRGSH---MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 86  MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 140
            T L  +A     L+  +LL+  GA    QDK  G  A   +I    +  +  ++
Sbjct: 58  STPLHLAARNG-HLEVVKLLLEAGADVXAQDK-FGKTAFDISID-NGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 75.7 bits (187), Expect = 9e-17
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           +  ++ GA V A   +   TPLH A R GHL+ V LL++ GAD    D  G T    +  
Sbjct: 41  RILMANGADVAAKDKNGS-TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99

Query: 62  FGHTRIVAYL 71
            G+  +   L
Sbjct: 100 NGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 68.4 bits (168), Expect = 4e-14
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 59  AAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 118
            +   H    + LV +G ++     +    L+ +A      D  R+L+  GA    +DK 
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAG-QDDEVRILMANGADVAAKDK- 55

Query: 119 HGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 163
           +G+  LH A     H+ +   L+   + +   +  G T F +  +N
Sbjct: 56  NGSTPLHLAAR-NGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  118 bits (297), Expect = 7e-30
 Identities = 42/215 (19%), Positives = 59/215 (27%), Gaps = 50/215 (23%)

Query: 535 GQDVNEPDSETVTLLHWAAIN---NRIEIMKYFISQGAIVDAIGGDLQA----------T 581
                   S   T L  A +N        +   +            + A          +
Sbjct: 33  TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHS 92

Query: 582 PLHWATRQGHLDSVVLLIQHGAD-------------PTLMDSEGSTCIHQAAQFGHTRIV 628
            LH A  +  L  V LL+++GAD                    G   +  AA      +V
Sbjct: 93  ALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV 152

Query: 629 AYLVAKGI---NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALH 685
            YL+       ++   D  G T L                        I D    N AL 
Sbjct: 153 TYLLENPHQPASLEATDSLGNTVLHALV-------------------MIADNSPENSALV 193

Query: 686 WAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 719
             +Y    + +   L       EI N QGLTP  L
Sbjct: 194 IHMY-DGLLQMGARLCPTVQLEEISNHQGLTPLKL 227

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  111 bits (278), Expect = 2e-27
 Identities = 29/172 (16%), Positives = 51/172 (29%), Gaps = 40/172 (23%)

Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA------------TP 582
                +   +  + LH A     ++ +K  +  GA V                      P
Sbjct: 80  NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP 139

Query: 583 LHWATRQGHLDSVVLLIQHG---ADPTLMDSEGSTCIHQ----------------AAQFG 623
           L  A      D V  L+++    A     DS G+T +H                     G
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDG 199

Query: 624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYK----VFSLDPTRLLITFGAS 671
             ++ A L        + +  G+T L  +A +    +F     R ++    S
Sbjct: 200 LLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF-----RHILQREFS 246

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 99.1 bits (247), Expect = 3e-23
 Identities = 37/185 (20%), Positives = 52/185 (28%), Gaps = 47/185 (25%)

Query: 2   KYFISQGAIVDAIGGDLQA----------TPLHWATRQGHLDSVVLLIQHGAD------- 44
              +            + A          + LH A  +  L  V LL+++GAD       
Sbjct: 63  MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACG 122

Query: 45  ------PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI---NVNLQDRNGMTALMWSAYK 95
                        G   +  AA      +V YL+       ++   D  G T L      
Sbjct: 123 RFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV-- 180

Query: 96  VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGL 154
                             I D    N AL   +Y    + +   L       EI N QGL
Sbjct: 181 -----------------MIADNSPENSALVIHMY-DGLLQMGARLCPTVQLEEISNHQGL 222

Query: 155 TPFML 159
           TP  L
Sbjct: 223 TPLKL 227

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 93.7 bits (233), Expect = 2e-21
 Identities = 20/140 (14%), Positives = 39/140 (27%), Gaps = 33/140 (23%)

Query: 532 VEAGQDVNEPDSETVTL-------------LHWAAINNRIEIMKYFISQG---------- 568
           VE G DV+                      L  AA   + +++ Y +             
Sbjct: 110 VENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATD 169

Query: 569 ---------AIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 619
                     ++ A       + L      G L     L        + + +G T +  A
Sbjct: 170 SLGNTVLHALVMIADNSPEN-SALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA 228

Query: 620 AQFGHTRIVAYLVAKGINVN 639
           A+ G   I  +++ +  +  
Sbjct: 229 AKEGKIEIFRHILQREFSGA 248

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 87.2 bits (216), Expect = 4e-19
 Identities = 26/146 (17%), Positives = 43/146 (29%), Gaps = 40/146 (27%)

Query: 1   MKYFISQGAIVDAIGGDLQA------------TPLHWATRQGHLDSVVLLIQHG---ADP 45
           +K  +  GA V                      PL  A      D V  L+++    A  
Sbjct: 106 VKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL 165

Query: 46  TLMDSEGSTCIHQ----------------AAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 89
              DS G+T +H                     G  ++ A L        + +  G+T L
Sbjct: 166 EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPL 225

Query: 90  MWSAYK----VFSLDPTRLLITFGAS 111
             +A +    +F     R ++    S
Sbjct: 226 KLAAKEGKIEIF-----RHILQREFS 246

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 72.9 bits (179), Expect = 3e-14
 Identities = 10/59 (16%), Positives = 21/59 (35%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
           + L      G L     L        + + +G T +  AA+ G   I  +++ +  +  
Sbjct: 190 SALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 29/174 (16%), Positives = 50/174 (28%), Gaps = 40/174 (22%)

Query: 21  TPLHWATRQGHLDSVVLLIQH--------GADPTLMDSEGSTCIHQAA---QFGHTRIVA 69
             L     +G  + +  L+++                S G TC+ +A    Q G    + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 70  YLVAKG-----------INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK- 117
            L+                   +   G +AL  +  K  SL   +LL+  GA   ++   
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK-RSLQCVKLLVENGADVHLRACG 122

Query: 118 -----------IHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQ---GLTP 156
                        G + L  A        + T L+ +        A    G T 
Sbjct: 123 RFFQKHQGTCFYFGELPLSLAAC-TKQWDVVTYLLENPHQPASLEATDSLGNTV 175

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 29/174 (16%), Positives = 50/174 (28%), Gaps = 40/174 (22%)

Query: 581 TPLHWATRQGHLDSVVLLIQH--------GADPTLMDSEGSTCIHQAA---QFGHTRIVA 629
             L     +G  + +  L+++                S G TC+ +A    Q G    + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 630 YLVAKG-----------INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK- 677
            L+                   +   G +AL  +  K  SL   +LL+  GA   ++   
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK-RSLQCVKLLVENGADVHLRACG 122

Query: 678 -----------IHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQ---GLTP 716
                        G + L  A        + T L+ +        A    G T 
Sbjct: 123 RFFQKHQGTCFYFGELPLSLAAC-TKQWDVVTYLLENPHQPASLEATDSLGNTV 175

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 44.4 bits (105), Expect = 9e-05
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAI 574
               Q     + + +T L  AA   +IEI ++ + +     A 
Sbjct: 208 CPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAA 250

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  106 bits (267), Expect = 1e-27
 Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
           T LH AA N  +E++K  +  GA V+A   + + TPLH A R GHL+ V LL++ GAD  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKG 635
             D  G T +H AA+ GH  +V  L+  G
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  101 bits (254), Expect = 7e-26
 Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
           TPLH A R GHL+ V LL++ GAD    D  G T +H AA+ GH  +V  L+  G +VN 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
           +D+NG T L  +A     L+  +LL+  GA
Sbjct: 64  KDKNGRTPLHLAARNG-HLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  101 bits (254), Expect = 7e-26
 Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
           TPLH A R GHL+ V LL++ GAD    D  G T +H AA+ GH  +V  L+  G +VN 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGA 670
           +D+NG T L  +A     L+  +LL+  GA
Sbjct: 64  KDKNGRTPLHLAARNG-HLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 84.7 bits (211), Expect = 4e-20
 Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 2  KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
          K  +  GA V+A   + + TPLH A R GHL+ V LL++ GAD    D  G T +H AA+
Sbjct: 19 KLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77

Query: 62 FGHTRIVAYLVAKG 75
           GH  +V  L+  G
Sbjct: 78 NGHLEVVKLLLEAG 91

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 82.8 bits (206), Expect = 2e-19
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           +EAG DVN  D    T LH AA N  +E++K  +  GA V+A   + + TPLH A R GH
Sbjct: 22  LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGH 80

Query: 592 LDSVVLLIQHGA 603
           L+ V LL++ GA
Sbjct: 81  LEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 75.1 bits (186), Expect = 1e-16
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 52  GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 111
           G T +H AA+ GH  +V  L+  G +VN +D+NG T L  +A     L+  +LL+  GA 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGAD 60

Query: 112 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 142
              +DK +G   LH A     H+ +   L+  
Sbjct: 61  VNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 75.1 bits (186), Expect = 1e-16
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
           G T +H AA+ GH  +V  L+  G +VN +D+NG T L  +A     L+  +LL+  GA 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGAD 60

Query: 672 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
              +DK +G   LH A     H+ +   L+  
Sbjct: 61  VNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 52.0 bits (126), Expect = 1e-08
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 1  MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA 43
          +K  +  GA V+A   + + TPLH A R GHL+ V LL++ GA
Sbjct: 51 VKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 46.2 bits (111), Expect = 2e-06
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 84  NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 142
           NG T L  +A     L+  +LL+  GA    +DK +G   LH A     H+ +   L+  
Sbjct: 1   NGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEA 57

Query: 143 TSSLEIPNAQGLTPFML 159
            + +   +  G TP  L
Sbjct: 58  GADVNAKDKNGRTPLHL 74

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 46.2 bits (111), Expect = 2e-06
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 644 NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 702
           NG T L  +A     L+  +LL+  GA    +DK +G   LH A     H+ +   L+  
Sbjct: 1   NGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEA 57

Query: 703 TSSLEIPNAQGLTPFML 719
            + +   +  G TP  L
Sbjct: 58  GADVNAKDKNGRTPLHL 74

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  111 bits (279), Expect = 7e-27
 Identities = 37/206 (17%), Positives = 63/206 (30%), Gaps = 22/206 (10%)

Query: 531 FVEAGQDVNEP-DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ 589
           F     ++N P D    T LHW      +E++K+ +  G+     G ++  + L  A + 
Sbjct: 116 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKS 174

Query: 590 GHLDSV----VLLIQHGADPTLMDSEGSTCIHQAAQFGHTR------------IVAYLVA 633
            +         LL        L DS   T +H                     ++ ++V 
Sbjct: 175 VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK 234

Query: 634 KGINVNLQDRNGMTALMWSAYKVFSLDPTRLL---ITFGASTTIQDKIHGNVALHWAIYA 690
           K         N   +                L            QD  +G+  L+ A   
Sbjct: 235 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS-NGDTCLNIAARL 293

Query: 691 KNHVAITTLVSHTSSLEIPNAQGLTP 716
            N   +  L+ + +   I N  GL P
Sbjct: 294 GNISIVDALLDYGADPFIANKSGLRP 319

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  110 bits (277), Expect = 1e-26
 Identities = 29/204 (14%), Positives = 64/204 (31%), Gaps = 19/204 (9%)

Query: 535 GQDVNEPDSETVTLLHWAAINNRI-EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 593
             + N     +       + ++ + E+   F +    ++    +   TPLHW T   +L+
Sbjct: 86  SSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLE 145

Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGH---TRIVAYLVAKGI-NVNLQDRNGMTAL 649
            V  L++HG++    D+ G +C+ +A +  +   +     L+      + L+D    T L
Sbjct: 146 LVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL 205

Query: 650 MWSAYKVFSLDPTR-----------LLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT 698
                       +             ++                  +     +    +  
Sbjct: 206 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILEN 265

Query: 699 LVSHTSSLEIPNAQ---GLTPFML 719
           L        + NAQ   G T   +
Sbjct: 266 LDLKWIIANMLNAQDSNGDTCLNI 289

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  100 bits (250), Expect = 4e-23
 Identities = 34/225 (15%), Positives = 61/225 (27%), Gaps = 9/225 (4%)

Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
             + NE   +    L         E+     +  +  ++ GG       H +      + 
Sbjct: 53  VVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEV 112

Query: 595 VVLLIQHGADP-TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 653
                    +    +D  G+T +H      +  +V +LV  G N    D  G + L+ + 
Sbjct: 113 NDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAV 172

Query: 654 YKVFSLDP---TRLLITFGASTTIQDKIHGNVALHWAIYAKN----HVAITTLVSHTSSL 706
             V + D      LL        ++D       LH  I          A    +      
Sbjct: 173 KSVNNYDSGTFEALLDYLYPCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILMGW 231

Query: 707 EIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNII 751
            +            E+            D I E  D      N++
Sbjct: 232 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML 276

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 97.4 bits (242), Expect = 4e-22
 Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 18/176 (10%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
             F +    ++    +   TPLHW T   +L+ V  L++HG++    D+ G +C+ +A +
Sbjct: 114 DAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVK 173

Query: 62  FGH---TRIVAYLVAKGI-NVNLQDRNGMTALMWSAYKVFSLDPTR-----------LLI 106
             +   +     L+      + L+D    T L            +             ++
Sbjct: 174 SVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIV 233

Query: 107 TFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQ---GLTPFML 159
                             +     +    +  L        + NAQ   G T   +
Sbjct: 234 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNI 289

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 87.8 bits (217), Expect = 9e-19
 Identities = 30/195 (15%), Positives = 54/195 (27%), Gaps = 9/195 (4%)

Query: 5   ISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADP-TLMDSEGSTCIHQAAQFG 63
            +  +  ++ GG       H +      +          +    +D  G+T +H      
Sbjct: 83  NNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIA 142

Query: 64  HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP---TRLLITFGASTTIQDKIHG 120
           +  +V +LV  G N    D  G + L+ +   V + D      LL        ++D    
Sbjct: 143 NLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS-MN 201

Query: 121 NVALHWAIYAKN----HVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDK 176
              LH  I          A    +       +            E+            D 
Sbjct: 202 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS 261

Query: 177 ITELKDHYNTQQNII 191
           I E  D      N++
Sbjct: 262 ILENLDLKWIIANML 276

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 81.6 bits (201), Expect = 9e-17
 Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 15/134 (11%)

Query: 535 GQDVNEPDSETVTLLHWAAINNR-----------IEIMKYFISQGAIVDAIGGDLQATPL 583
              +   DS   T+LH   I +            ++I+  +I +        G  +    
Sbjct: 191 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250

Query: 584 HWATRQGHLDSVVLLIQHGADPTLM----DSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 639
                    DS++  +        M    DS G TC++ AA+ G+  IV  L+  G +  
Sbjct: 251 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 310

Query: 640 LQDRNGMTALMWSA 653
           + +++G+  + + A
Sbjct: 311 IANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 78.5 bits (193), Expect = 8e-16
 Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 21/175 (12%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSV----VLLIQHGADPTLMDSEGSTCI 56
           +K+ +  G+     G ++  + L  A +  +         LL        L DS   T +
Sbjct: 147 VKHLVKHGSNRLY-GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL 205

Query: 57  HQAAQFGHTR------------IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRL 104
           H                     ++ ++V K         N   +                
Sbjct: 206 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILEN 265

Query: 105 L---ITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 156
           L            QD  +G+  L+ A    N   +  L+ + +   I N  GL P
Sbjct: 266 LDLKWIIANMLNAQDS-NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRP 319

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 68.1 bits (166), Expect = 3e-12
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 9/96 (9%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNR----IEIMKYFISQGAIVDA--IGGDLQATPLHW 585
           V+      +  +             R    +E +        +++A    GD   T L+ 
Sbjct: 233 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD---TCLNI 289

Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 621
           A R G++  V  L+ +GADP + +  G   +   A 
Sbjct: 290 AARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 66.6 bits (162), Expect = 7e-12
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 4/94 (4%)

Query: 4   FISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM----DSEGSTCIHQA 59
           +I +        G  +             DS++  +        M    DS G TC++ A
Sbjct: 231 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA 290

Query: 60  AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 93
           A+ G+  IV  L+  G +  + +++G+  + + A
Sbjct: 291 ARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           T L+ A R G++  V  L+ +GADP + +  G   +   A 
Sbjct: 285 TCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  107 bits (270), Expect = 4e-26
 Identities = 40/227 (17%), Positives = 66/227 (29%), Gaps = 56/227 (24%)

Query: 547 TLLHWAAINNRIE----IMKYFISQGAIV---DAIGGDLQATPLHWA---TRQGHLDSVV 596
            +L         +    ++ + ++    +   +        T L  A      G  D++ 
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 597 LLIQHGADPTLM-----------DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN- 644
           +L+        M              G T +H A +      V  LV KG +V+ Q R  
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 645 -------------GMTALMWSAYKVFSLDPTRLLITFG---ASTTIQDKIHGNVALHWAI 688
                        G   L  +A           L   G   A    QD   GN  LH  +
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACT-NQPHIVHYLTENGHKQADLRRQDS-RGNTVLHALV 184

Query: 689 YAKNHVAITT---------LVSH-------TSSLEIPNAQGLTPFML 719
              ++    T         L+         T+   + N  GL+P M+
Sbjct: 185 AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM 231

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  102 bits (256), Expect = 2e-24
 Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 33/167 (19%)

Query: 537 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQA-----------TPL 583
              +      T LH A        ++  + +GA V A   G   Q             PL
Sbjct: 85  PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPL 144

Query: 584 HWATRQGHLDSVVLLIQHG---ADPTLMDSEGSTCIHQAAQFGH---------TRIVAYL 631
             A        V  L ++G   AD    DS G+T +H                T++   L
Sbjct: 145 SLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLL 204

Query: 632 VAKGINVN-------LQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
           + K   +        L + +G++ LM +A     +   + +I    +
Sbjct: 205 LIKCAKLFPDTNLEALLNNDGLSPLMMAAKT-GKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 99.1 bits (247), Expect = 3e-23
 Identities = 39/209 (18%), Positives = 62/209 (29%), Gaps = 52/209 (24%)

Query: 1   MKYFISQGAIV---DAIGGDLQATPLHWA---TRQGHLDSVVLLIQHGADPTLM------ 48
           + + ++    +   +        T L  A      G  D++ +L+        M      
Sbjct: 25  LSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINS 84

Query: 49  -----DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN--------------GMTAL 89
                   G T +H A +      V  LV KG +V+ Q R               G   L
Sbjct: 85  PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPL 144

Query: 90  MWSAYKVFSLDPTRLLITFG---ASTTIQDKIHGNVALHWAIYAKNHVAITT-------- 138
             +A           L   G   A    QD   GN  LH  +   ++    T        
Sbjct: 145 SLAACT-NQPHIVHYLTENGHKQADLRRQDS-RGNTVLHALVAIADNTRENTKFVTKMYD 202

Query: 139 -LVSH-------TSSLEIPNAQGLTPFML 159
            L+         T+   + N  GL+P M+
Sbjct: 203 LLLIKCAKLFPDTNLEALLNNDGLSPLMM 231

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 79.1 bits (195), Expect = 2e-16
 Identities = 26/141 (18%), Positives = 42/141 (29%), Gaps = 34/141 (24%)

Query: 532 VEAGQDVNEPDSETV--------------TLLHWAAINNRIEIMKYFISQG---AIVDAI 574
           VE G DV+                       L  AA  N+  I+ Y    G   A +   
Sbjct: 113 VEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQ 172

Query: 575 GGDLQATPLHWATRQGH---------LDSVVLLIQHGAD-------PTLMDSEGSTCIHQ 618
                 T LH                     LL+   A          L++++G + +  
Sbjct: 173 DSRGN-TVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM 231

Query: 619 AAQFGHTRIVAYLVAKGINVN 639
           AA+ G   I  +++ + I   
Sbjct: 232 AAKTGKIGIFQHIIRREIADA 252

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 77.5 bits (191), Expect = 7e-16
 Identities = 28/142 (19%), Positives = 48/142 (33%), Gaps = 33/142 (23%)

Query: 2   KYFISQGAIVDA--IGGDLQA-----------TPLHWATRQGHLDSVVLLIQHG---ADP 45
           +  + +GA V A   G   Q             PL  A        V  L ++G   AD 
Sbjct: 110 ELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL 169

Query: 46  TLMDSEGSTCIHQAAQFGH---------TRIVAYLVAKGINVN-------LQDRNGMTAL 89
              DS G+T +H                T++   L+ K   +        L + +G++ L
Sbjct: 170 RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL 229

Query: 90  MWSAYKVFSLDPTRLLITFGAS 111
           M +A     +   + +I    +
Sbjct: 230 MMAAKT-GKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 71.7 bits (176), Expect = 7e-14
 Identities = 32/179 (17%), Positives = 48/179 (26%), Gaps = 41/179 (22%)

Query: 21  TPLHWATRQGH---LDSVV-LLIQHGADPTLMD----SEGSTCIHQAA---QFGHTRIVA 69
             L     +G    L+ ++  L+ H    T  +    S G TC+ +A      G    + 
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 70  YLVAKG-----------INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK- 117
            L+                       G TAL  +  +        LL+  GA    Q + 
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIER-RCKHYVELLVEKGADVHAQARG 125

Query: 118 ------------IHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQ---GLTPFMLL 160
                         G + L  A    N   I   L  +         Q   G T    L
Sbjct: 126 RFFQPKDEGGYFYFGELPLSLAAC-TNQPHIVHYLTENGHKQADLRRQDSRGNTVLHAL 183

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 20/97 (20%)

Query: 2   KYFISQG---AIVDAIGGDLQATPLHWATRQGH---------LDSVVLLIQHGAD----- 44
            Y    G   A +         T LH                     LL+   A      
Sbjct: 157 HYLTENGHKQADLRRQDSRGN-TVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT 215

Query: 45  --PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
               L++++G + +  AA+ G   I  +++ + I   
Sbjct: 216 NLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 21/135 (15%)

Query: 54  TCIHQAAQFGHTRIVAYLVAKGINVNLQDR----NGMTALMWSAYKVFS--LDPTRLLIT 107
             + + +  G   ++++L+     +  ++      G T L  +   + +   D   +L+ 
Sbjct: 11  DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD 70

Query: 108 FGASTTIQDKI----------HGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 156
               T    +            G  ALH AI  +        LV   +     +AQ    
Sbjct: 71  IAEKTGNMREFINSPFRDVYYRGQTALHIAIE-RRCKHYVELLVEKGAD---VHAQARGR 126

Query: 157 FMLLEENIGAPWLGK 171
           F   ++  G  + G+
Sbjct: 127 FFQPKDEGGYFYFGE 141

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 7/49 (14%)

Query: 532 VEAGQDVNEPDSETV-------TLLHWAAINNRIEIMKYFISQGAIVDA 573
           +     +    +          + L  AA   +I I ++ I +     A
Sbjct: 205 LIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA 253

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  102 bits (256), Expect = 2e-23
 Identities = 26/213 (12%), Positives = 51/213 (23%), Gaps = 27/213 (12%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA---TPLHWATR 588
           + + + V    +E       AA N  + ++                +QA        A  
Sbjct: 115 LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM--AMIQAENYHAFRLAAE 172

Query: 589 QGHLDSVVLLIQHGADPTLMD--SEGSTCIHQAA-QFGHTRIVAYLVAKGINVNLQDRNG 645
            GHL  +  L +           +E       AA   GH  ++ +L+   + +   + + 
Sbjct: 173 NGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHE 232

Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH-----------GNVALHWAIYAKNHV 694
                       +    RL     A                    G   L   I   + V
Sbjct: 233 FEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEV 292

Query: 695 AITTL--------VSHTSSLEIPNAQGLTPFML 719
            +  +        +   +              L
Sbjct: 293 LLDDIRFLLSIPGIKALAPTATIPGDANELLRL 325

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 93.5 bits (232), Expect = 2e-20
 Identities = 25/177 (14%), Positives = 44/177 (24%), Gaps = 14/177 (7%)

Query: 542 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH 601
           + E V  L      +     K   S           +             LD++ LL+  
Sbjct: 59  NMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITG-CSSALDTLCLLLTS 117

Query: 602 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD--RNGMTALMWSAYK---- 655
                ++ +E       AA+ GH  ++  L        +         A   +A      
Sbjct: 118 DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLH 177

Query: 656 VFSLDPTRLLITFGASTTIQD-KIHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPN 710
           V        L     +      +     A  WA   + H  +   L+     L    
Sbjct: 178 V-----LNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE 229

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 90.4 bits (224), Expect = 2e-19
 Identities = 28/218 (12%), Positives = 51/218 (23%), Gaps = 40/218 (18%)

Query: 528 KYQFVEAGQDVNEPDSET--VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQ-ATPLH 584
                E          +         AA N  + ++                 +      
Sbjct: 145 NR-LCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFR 203

Query: 585 W-ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN---- 639
           W A  +GH + +  L+         +           ++G   +  ++      +     
Sbjct: 204 WAAVGRGHHNVINFLLDCPVMLAYAE-------IHEFEYGEKYVNPFIARHVNRLKEMHD 256

Query: 640 ----------------LQDRNGMTALMWSAYK--VFSLDPTRLLITF-----GASTTIQD 676
                            +   G   L     +     LD  R L++       A T    
Sbjct: 257 AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIP 316

Query: 677 KIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGL 714
               N  L  A+   N  A   L+S  S L +  A   
Sbjct: 317 G-DANELLRLALRLGNQGACALLLSIPSVLALTKANNY 353

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 90.0 bits (223), Expect = 2e-19
 Identities = 22/157 (14%), Positives = 39/157 (24%), Gaps = 14/157 (8%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 61
           K   S           +             LD++ LL+       ++ +E       AA+
Sbjct: 79  KQLWSDAHKKGIKSEVICFVAAITG-CSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE 137

Query: 62  FGHTRIVAYLVAKGINVNLQD--RNGMTALMWSAYK----VFSLDPTRLLITFGASTTIQ 115
            GH  ++  L        +         A   +A      V        L     +    
Sbjct: 138 NGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHV-----LNRLCELAPTEATA 192

Query: 116 D-KIHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPN 150
             +     A  WA   + H  +   L+     L    
Sbjct: 193 MIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE 229

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 69.6 bits (170), Expect = 1e-12
 Identities = 24/182 (13%), Positives = 43/182 (23%), Gaps = 37/182 (20%)

Query: 2   KYFISQGAIVDAIGGDLQ-ATPLHW-ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
                            +      W A  +GH + +  L+         +          
Sbjct: 180 NRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE-------IHE 232

Query: 60  AQFGHTRIVAYLVAKGINVN--------------------LQDRNGMTALMWSAYK--VF 97
            ++G   +  ++      +                      +   G   L     +    
Sbjct: 233 FEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEV 292

Query: 98  SLDPTRLLITF-----GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQ 152
            LD  R L++       A T        N  L  A+   N  A   L+S  S L +  A 
Sbjct: 293 LLDDIRFLLSIPGIKALAPTATIPG-DANELLRLALRLGNQGACALLLSIPSVLALTKAN 351

Query: 153 GL 154
             
Sbjct: 352 NY 353

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 68.0 bits (166), Expect = 4e-12
 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 12/102 (11%)

Query: 539 NEPDSETVTLLHWAAINN---RIEIMKYFIS-----QGAIVDAIGGDLQATPLHWATRQG 590
                +   +L      N    ++ +++ +S       A    I GD     L  A R G
Sbjct: 272 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD-ANELLRLALRLG 330

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 632
           +  +  LL+   +   L  +      +     G   + A  +
Sbjct: 331 NQGACALLLSIPSVLALTKANN---YYINETGGRLDLRAVAL 369

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 64.6 bits (157), Expect = 4e-11
 Identities = 18/151 (11%), Positives = 36/151 (23%), Gaps = 9/151 (5%)

Query: 15  GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCI-HQAAQFGHTRIVAYLVA 73
             +++           H +     +   A    + SE    +            +  L+ 
Sbjct: 57  TKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLT 116

Query: 74  KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK-IHGNVALHWAIYAKN 132
               V +       A   +A     L     L     +  +         A   A  A+N
Sbjct: 117 SDEIVKVIQAENYQAFRLAAENGH-LHVLNRLCELAPTEIMAMIQAENYHAFRLA--AEN 173

Query: 133 -HVAITT-LVSHTSSLEIPN--AQGLTPFML 159
            H+ +   L     +       A+    F  
Sbjct: 174 GHLHVLNRLCELAPTEATAMIQAENYYAFRW 204

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 63.8 bits (155), Expect = 9e-11
 Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 4/72 (5%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 591
           ++A         +   LL  A            +S  +++       +A   +     G 
Sbjct: 306 IKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALT----KANNYYINETGGR 361

Query: 592 LDSVVLLIQHGA 603
           LD   + ++H  
Sbjct: 362 LDLRAVALEHHH 373

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 10/168 (5%), Positives = 32/168 (19%), Gaps = 44/168 (26%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDS---------- 50
           + + +    ++                  G       + +H      M            
Sbjct: 215 INFLLDCPVMLAY--------AEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGV 266

Query: 51  ----------EGSTCIHQAAQFGHTRIVAYL--------VAKGINVNLQDRNGMTALMWS 92
                     +G   +    +     ++  +        +           +    L  +
Sbjct: 267 FDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA 326

Query: 93  AYKVFSLDPTRLLITFGASTTIQDK-------IHGNVALHWAIYAKNH 133
                      LL++  +   +            G + L       +H
Sbjct: 327 LRLGN-QGACALLLSIPSVLALTKANNYYINETGGRLDLRAVALEHHH 373

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 78.3 bits (192), Expect = 2e-15
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 1/103 (0%)

Query: 548 LLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLDSVVLLIQHGADPT 606
           L   +     +  M   ++ GA V+ + G     TPL  AT    L +   L+Q+GA+  
Sbjct: 203 LFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN 262

Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
             DS G   +H A   GHT +    + +G ++  +D  G   L
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 74.8 bits (183), Expect = 2e-14
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 5   ISQGAIVDAIGGDLQA-TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 63
           ++ GA V+ + G     TPL  AT    L +   L+Q+GA+    DS G   +H A   G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279

Query: 64  HTRIVAYLVAKGINVNLQDRNGMTAL 89
           HT +    + +G ++  +D  G   L
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPL 305

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 68.7 bits (167), Expect = 2e-12
 Identities = 38/146 (26%), Positives = 53/146 (36%), Gaps = 4/146 (2%)

Query: 520 TEPTSLSDKYQFVEAGQDVNEPDSETV--TLLHWAAINNRIEIMKYFISQGAIVDAIGGD 577
             P SL      +  G DVN  +      T L  A   N +   ++ +  GA V+     
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA 267

Query: 578 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV-AKGI 636
               PLH AT  GH     L ++ GAD    DSEG   +  A +  +  IV  L  AK  
Sbjct: 268 -GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326

Query: 637 NVNLQDRNGMTALMWSAYKVFSLDPT 662
                            ++ FSL  +
Sbjct: 327 EAEAAQGQAGDETYLDIFRDFSLMAS 352

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 63.3 bits (153), Expect = 1e-10
 Identities = 31/142 (21%), Positives = 49/142 (34%), Gaps = 5/142 (3%)

Query: 17  DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDS--EGSTCIHQAAQFGHTRIVAYLVAK 74
              A     +     L ++   + HGAD   ++   + +T + QA          +L+  
Sbjct: 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN 257

Query: 75  GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 134
           G NVN  D  G   L  +     +     L +  GA    +D   G   L  A+    + 
Sbjct: 258 GANVNQADSAGRGPLHHATILGHT-GLACLFLKRGADLGARDS-EGRDPLTIAM-ETANA 314

Query: 135 AITTLVSHTSSLEIPNAQGLTP 156
            I TL+      E   AQG   
Sbjct: 315 DIVTLLRLAKMREAEAAQGQAG 336

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 56.7 bits (136), Expect = 1e-08
 Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 1/83 (1%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV-AKGINVN 79
            PLH AT  GH     L ++ GAD    DSEG   +  A +  +  IV  L  AK     
Sbjct: 270 GPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAE 329

Query: 80  LQDRNGMTALMWSAYKVFSLDPT 102
                         ++ FSL  +
Sbjct: 330 AAQGQAGDETYLDIFRDFSLMAS 352

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 51.3 bits (122), Expect = 8e-07
 Identities = 23/149 (15%), Positives = 41/149 (27%), Gaps = 37/149 (24%)

Query: 577 DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDS--EGSTCIHQAAQFGHTRIVAYLVAK 634
              A     +     L ++   + HGAD   ++   + +T + QA          +L+  
Sbjct: 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN 257

Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
           G NVN  D  G   L                                   H A    +  
Sbjct: 258 GANVNQADSAGRGPL-----------------------------------HHATILGHTG 282

Query: 695 AITTLVSHTSSLEIPNAQGLTPFMLLEEN 723
                +   + L   +++G  P  +  E 
Sbjct: 283 LACLFLKRGADLGARDSEGRDPLTIAMET 311

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 73.9 bits (181), Expect = 2e-14
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 11/141 (7%)

Query: 520 TEPTSLSDKYQFVEA---GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA-----IV 571
           +  + +  +  ++ A           +     L  A  N  +  +    + G      + 
Sbjct: 123 SAESDMGTRRDYIMAKYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLP 182

Query: 572 DAIGGDLQATPLHWATRQGHLDSVV---LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 628
                  +   LH A +  +  S+     +IQ+G       ++G+T +H AA +     +
Sbjct: 183 GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCL 242

Query: 629 AYLVAKGINVNLQDRNGMTAL 649
             L+     V   +  G TAL
Sbjct: 243 KLLLKGRALVGTVNEAGETAL 263

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 71.2 bits (174), Expect = 2e-13
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 21  TPLHWATRQGHLDSVV---LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 77
             LH A +  +  S+     +IQ+G       ++G+T +H AA +     +  L+     
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 251

Query: 78  VNLQDRNGMTAL 89
           V   +  G TAL
Sbjct: 252 VGTVNEAGETAL 263

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 64.6 bits (157), Expect = 3e-11
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 10/106 (9%)

Query: 535 GQDVNEPDSETV------TLLHWA---AINNRIEIMKYFISQGAIVDAIGGDLQATPLHW 585
           GQD  +P            +LH A   A    + ++ + I  G  +DA   D   T LH+
Sbjct: 174 GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN-TALHY 232

Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 631
           A      D + LL++  A    ++  G T +  A +  H      L
Sbjct: 233 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 13/51 (25%), Positives = 21/51 (41%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 71
           T LH+A      D + LL++  A    ++  G T +  A +  H      L
Sbjct: 228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 53.8 bits (129), Expect = 1e-07
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 594
           G  ++   ++  T LH+AA+ N+ + +K  +   A+V  +    + T L  A ++ H + 
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE-TALDIARKKHHKEC 274

Query: 595 VVLLIQHGADPTLMDSEGSTCIH 617
             LL Q  A         +  +H
Sbjct: 275 EELLEQAQAG------TFAFPLH 291

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.4 bits (115), Expect = 5e-06
 Identities = 20/147 (13%), Positives = 42/147 (28%), Gaps = 44/147 (29%)

Query: 26  ATRQGHLDSVVLLIQHGADPTL------MDSEGSTCIHQAAQFGHTR---IVAYLVAKGI 76
           A     L SV+    +G D           +     +H A +  +     +V +++  G 
Sbjct: 158 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG 217

Query: 77  NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 136
           +++ +  +G TAL                                   H+A        +
Sbjct: 218 HLDAKAADGNTAL-----------------------------------HYAALYNQPDCL 242

Query: 137 TTLVSHTSSLEIPNAQGLTPFMLLEEN 163
             L+   + +   N  G T   +  + 
Sbjct: 243 KLLLKGRALVGTVNEAGETALDIARKK 269

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.4 bits (115), Expect = 5e-06
 Identities = 20/147 (13%), Positives = 42/147 (28%), Gaps = 44/147 (29%)

Query: 586 ATRQGHLDSVVLLIQHGADPTL------MDSEGSTCIHQAAQFGHTR---IVAYLVAKGI 636
           A     L SV+    +G D           +     +H A +  +     +V +++  G 
Sbjct: 158 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG 217

Query: 637 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 696
           +++ +  +G TAL                                   H+A        +
Sbjct: 218 HLDAKAADGNTAL-----------------------------------HYAALYNQPDCL 242

Query: 697 TTLVSHTSSLEIPNAQGLTPFMLLEEN 723
             L+   + +   N  G T   +  + 
Sbjct: 243 KLLLKGRALVGTVNEAGETALDIARKK 269

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 72.0 bits (176), Expect = 8e-14
 Identities = 30/170 (17%), Positives = 53/170 (31%), Gaps = 12/170 (7%)

Query: 527 DKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA-----IVDAIGGDLQAT 581
            KY      +  +   +  +  L  A     I  +    + G      I  A G +   T
Sbjct: 112 AKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDET 171

Query: 582 PLHWATRQG---HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 638
            LH A R      L  V  L+Q+  +      +GST +H      +   +  L+    ++
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI 231

Query: 639 NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI 688
            + + +G T L  +           L              H +V   W +
Sbjct: 232 EIANESGETPLDIAKRLKHEHCEELLTQALSGRFN----SHVHVEYEWRL 277

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 67.3 bits (164), Expect = 3e-12
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 7/111 (6%)

Query: 21  TPLHWATRQG---HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 77
           T LH A R      L  V  L+Q+  +      +GST +H      +   +  L+    +
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230

Query: 78  VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI 128
           + + + +G T L  +           L              H +V   W +
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN----SHVHVEYEWRL 277

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 44.6 bits (105), Expect = 8e-05
 Identities = 27/149 (18%), Positives = 43/149 (28%), Gaps = 44/149 (29%)

Query: 24  HWATRQGHLDSVVLLIQHGADPTLM------DSEGSTCIHQAAQFG---HTRIVAYLVAK 74
             A +   +  ++     G D T             T +H A +        IV +LV  
Sbjct: 135 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN 194

Query: 75  GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 134
             N++ Q   G TAL                                   H+     N  
Sbjct: 195 SGNLDKQTGKGSTAL-----------------------------------HYCCLTDNAE 219

Query: 135 AITTLVSHTSSLEIPNAQGLTPFMLLEEN 163
            +  L+   +S+EI N  G TP  + +  
Sbjct: 220 CLKLLLRGKASIEIANESGETPLDIAKRL 248

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 44.6 bits (105), Expect = 8e-05
 Identities = 27/149 (18%), Positives = 43/149 (28%), Gaps = 44/149 (29%)

Query: 584 HWATRQGHLDSVVLLIQHGADPTLM------DSEGSTCIHQAAQFG---HTRIVAYLVAK 634
             A +   +  ++     G D T             T +H A +        IV +LV  
Sbjct: 135 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN 194

Query: 635 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 694
             N++ Q   G TAL                                   H+     N  
Sbjct: 195 SGNLDKQTGKGSTAL-----------------------------------HYCCLTDNAE 219

Query: 695 AITTLVSHTSSLEIPNAQGLTPFMLLEEN 723
            +  L+   +S+EI N  G TP  + +  
Sbjct: 220 CLKLLLRGKASIEIANESGETPLDIAKRL 248

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 61.1 bits (148), Expect = 1e-09
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 21  TPLHWATRQGHLDSVV---LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 77
             LH A +  +  S+     +IQ+G       ++G+T +H AA +     +  L+     
Sbjct: 173 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 232

Query: 78  VNLQDRNGMTALMWS 92
           V   +  G TAL  +
Sbjct: 233 VGTVNEAGETALDIA 247

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 61.1 bits (148), Expect = 1e-09
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 581 TPLHWATRQGHLDSVV---LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 637
             LH A +  +  S+     +IQ+G       ++G+T +H AA +     +  L+     
Sbjct: 173 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 232

Query: 638 VNLQDRNGMTALMWS 652
           V   +  G TAL  +
Sbjct: 233 VGTVNEAGETALDIA 247

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 27/112 (24%), Positives = 39/112 (34%), Gaps = 22/112 (19%)

Query: 535 GQDVNEPDSETV------TLLHWAAINNRIEIMKYFISQGAIVDAI---GGDLQA----- 580
           GQD  +P            +LH A        +        +VD I   GG L A     
Sbjct: 155 GQDFGQPLPGPDAQAPEELVLHLAVKVANQASL-------PLVDFIIQNGGHLDAKAADG 207

Query: 581 -TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 631
            T LH+A      D + LL++  A    ++  G T +  A +  H      L
Sbjct: 208 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 9   AIVDAI---GGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
            +VD I   GG L A      T LH+A      D + LL++  A    ++  G T +  A
Sbjct: 188 PLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247

Query: 60  AQFGHTRIVAYL 71
            +  H      L
Sbjct: 248 RKKHHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 23/147 (15%), Positives = 38/147 (25%), Gaps = 38/147 (25%)

Query: 23  LHWATRQGHLDSVVLLIQHGADPTLM------DSEGSTCIHQAAQFGHTRIVAYLVAKGI 76
           L  A     L SV+    +G D           +     +H A +  +            
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA---------- 185

Query: 77  NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 136
                                SL     +I  G     +    GN ALH+A        +
Sbjct: 186 ---------------------SLPLVDFIIQNGGHLDAKAA-DGNTALHYAALYNQPDCL 223

Query: 137 TTLVSHTSSLEIPNAQGLTPFMLLEEN 163
             L+   + +   N  G T   +  + 
Sbjct: 224 KLLLKGRALVGTVNEAGETALDIARKK 250

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 23/147 (15%), Positives = 38/147 (25%), Gaps = 38/147 (25%)

Query: 583 LHWATRQGHLDSVVLLIQHGADPTLM------DSEGSTCIHQAAQFGHTRIVAYLVAKGI 636
           L  A     L SV+    +G D           +     +H A +  +            
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA---------- 185

Query: 637 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 696
                                SL     +I  G     +    GN ALH+A        +
Sbjct: 186 ---------------------SLPLVDFIIQNGGHLDAKAA-DGNTALHYAALYNQPDCL 223

Query: 697 TTLVSHTSSLEIPNAQGLTPFMLLEEN 723
             L+   + +   N  G T   +  + 
Sbjct: 224 KLLLKGRALVGTVNEAGETALDIARKK 250

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 3e-04
 Identities = 89/678 (13%), Positives = 178/678 (26%), Gaps = 227/678 (33%)

Query: 308 GVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKF-----DH 362
            +++    E+  +II   +             L+ K             V KF       
Sbjct: 44  SILS---KEEIDHIIMSKDA--VSGTLRLFWTLLSKQ---------EEMVQKFVEEVLRI 89

Query: 363 HCPWVGNCIGAK------NHKYFVGYISSL-----LFMCCFVLYGIAKYWK-SKCQFQLS 410
           +  ++ + I  +        + ++     L     +F    V   +  Y K  +   +L 
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQALLELR 148

Query: 411 HEREVMFVVWDMLQCDGWV-------GFILLNAFVHAI-WITVLLSCQLYQIISLGMTTN 462
             + V  ++  +L              + +       I W+ +        ++       
Sbjct: 149 PAKNV--LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL------- 199

Query: 463 ERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMK-------R 515
           E +     +    N   +     H   +                  RI  ++       +
Sbjct: 200 EMLQ-KLLYQIDPNWTSR---SDHSSNI----------------KLRIHSIQAELRRLLK 239

Query: 516 YEVYTEPTSLS--DKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA-IVD 572
            + Y     L             +V            W A N   +I+    ++   + D
Sbjct: 240 SKPY--ENCLLVLL---------NVQNAK-------AWNAFNLSCKIL--LTTRFKQVTD 279

Query: 573 AIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 632
            +                   + + L  H    TL   E  +                L+
Sbjct: 280 FLSAATT--------------THISLDHH--SMTLTPDEVKS----------------LL 307

Query: 633 AKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT-FGASTTIQDKIHGNVALHWAIYAK 691
            K ++   QD      L          +P    ++    S  I+D +       W  +  
Sbjct: 308 LKYLDCRPQD------LPREVLTT---NP--RRLSIIAES--IRDGLA-----TWDNWKH 349

Query: 692 -NHVAITTLVSHTSSLEIPNAQGLTP---------FMLLEENIGAP-------WLGKATV 734
            N   +TT++   SSL +     L P           +   +   P       W      
Sbjct: 350 VNCDKLTTIIE--SSLNV-----LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 735 DKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKL-ALF 793
           D +  +          +H++S  +        ++P      I    + ++     L    
Sbjct: 403 DVMVVVNK--------LHKYSLVEKQPKESTISIP-----SIYLELKVKLENEYALHRSI 449

Query: 794 ISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITW-LFWITPV--VNFFVSLLFFS 850
           +  Y + +      FD        L  YF   +  +I   L  I     +  F  ++F  
Sbjct: 450 VDHYNIPKT-----FDSDDLIPPYLDQYF---YS-HIGHHLKNIEHPERMTLF-RMVFLD 499

Query: 851 TSGVLWYNFIK--------CWKGDPGVITAPQDEKF--RYIIE---LAERGTFEPLSF-- 895
                 + F++         W     ++   Q  KF   YI +     ER     L F  
Sbjct: 500 ------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553

Query: 896 -CSTCLVRKPIRSKHCSI 912
                L    I SK+  +
Sbjct: 554 KIEENL----ICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 9e-04
 Identities = 52/320 (16%), Positives = 94/320 (29%), Gaps = 96/320 (30%)

Query: 71  LVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT-FGASTTIQDKIHGNVALHWAIY 129
           L+ K ++   QD      L          +P    ++    S  I+D +       W  +
Sbjct: 306 LLLKYLDCRPQD------LPREVLTT---NP--RRLSIIAES--IRDGLA-----TWDNW 347

Query: 130 AK-NHVAITTLVSHTSSLEIPNAQGLTP---------FMLLEENIGAP-------WLGKA 172
              N   +TT++   SSL +     L P           +   +   P       W    
Sbjct: 348 KHVNCDKLTTIIE--SSLNV-----LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 173 TVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKL-A 231
             D +  +          +H++S  +        ++P      I    + ++     L  
Sbjct: 401 KSDVMVVVNK--------LHKYSLVEKQPKESTISIP-----SIYLELKVKLENEYALHR 447

Query: 232 LFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITW-LFWITPV--VNFFVSLLF 288
             +  Y + +      FD        L  YF   +  +I   L  I     +  F  ++F
Sbjct: 448 SIVDHYNIPKT-----FDSDDLIPPYLDQYF---YS-HIGHHLKNIEHPERMTLF-RMVF 497

Query: 289 FSTSGVLWYNFIK--------CWKGDPGVITAPQDEKF--RYIIE---LAERGTFEPLSF 335
                   + F++         W     ++   Q  KF   YI +     ER     L F
Sbjct: 498 LD------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551

Query: 336 ---CSTCLVRKPIRSKHCSI 352
                  L    I SK+  +
Sbjct: 552 LPKIEENL----ICSKYTDL 567

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	923
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.98
2rfa_A	232	Transient receptor potential cation channel subfa	99.98
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.85
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.85
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.85
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.83
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.81
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.81
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.73
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.71

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.5e-62  Score=561.19  Aligned_cols=388  Identities=26%  Similarity=0.330  Sum_probs=352.4

Q ss_pred             ccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCC
Q psy3899           6 SQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG   85 (923)
Q Consensus         6 ~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g   85 (923)
                      +.|+++|..+.. |.||||+||..|+.++|++|+++|++++.+|..|.||||+||..|+.+++++|+++|+++|.+|.+|
T Consensus         2 ~~g~~~~~~~~~-g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g   80 (437)
T 1n11_A            2 SPGISGGGGGES-GLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD   80 (437)
T ss_dssp             --------------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTS
T ss_pred             CCCCCccccCCC-CCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Confidence            479999998876 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcC
Q psy3899          86 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIG  165 (923)
Q Consensus        86 ~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~  165 (923)
                      .||||+|+..|+ .+++++|+++|++++..|. .|.||||+|+..|+.++|++|++++++.+..+..|.||||+|+..|+
T Consensus        81 ~t~L~~A~~~g~-~~~v~~Ll~~ga~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~  158 (437)
T 1n11_A           81 QTPLHCAARIGH-TNMVKLLLENNANPNLATT-AGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK  158 (437)
T ss_dssp             CCHHHHHHHHTC-HHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHCCC-HHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCC
Confidence            999999999995 9999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhhhhHHHHHHhhhhhhhhhHhhhcccchhhhhHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh
Q psy3899         166 APWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGT  245 (923)
Q Consensus       166 ~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (923)
                      .+     ++++|++...                                                               
T Consensus       159 ~~-----~v~~Ll~~g~---------------------------------------------------------------  170 (437)
T 1n11_A          159 VR-----VAELLLERDA---------------------------------------------------------------  170 (437)
T ss_dssp             HH-----HHHHHHHTTC---------------------------------------------------------------
T ss_pred             HH-----HHHHHHhCCC---------------------------------------------------------------
Confidence            99     8888876000                                                               


Q ss_pred             hccccccccccchhhhhhhHHHhhhhHHHhhhhhhhHHHHHhhhhhhhHHHHhhhhhccCCCccccCChhhHHHHHHHHH
Q psy3899         246 VMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELA  325 (923)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (923)
                                                                                  ++.                 
T Consensus       171 ------------------------------------------------------------~~~-----------------  173 (437)
T 1n11_A          171 ------------------------------------------------------------HPN-----------------  173 (437)
T ss_dssp             ------------------------------------------------------------CTT-----------------
T ss_pred             ------------------------------------------------------------CCC-----------------
Confidence                                                                        000                 


Q ss_pred             hcCCCCCCccccccccccCCcCcCccchhhHhhccCCCCccccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3899         326 ERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKC  405 (923)
Q Consensus       326 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~  405 (923)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (437)
T 1n11_A          174 --------------------------------------------------------------------------------  173 (437)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccchhhHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhccccccccCCCCCCCCcc
Q psy3899         406 QFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPF  485 (923)
Q Consensus       406 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l  485 (923)
                                                                                            ..+..|.|||
T Consensus       174 ----------------------------------------------------------------------~~~~~g~t~L  183 (437)
T 1n11_A          174 ----------------------------------------------------------------------AAGKNGLTPL  183 (437)
T ss_dssp             ----------------------------------------------------------------------CCCSSCCCHH
T ss_pred             ----------------------------------------------------------------------CCCCCCCCHH
Confidence                                                                                  0022357899


Q ss_pred             ccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCcHHHHHHHH
Q psy3899         486 HRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFI  565 (923)
Q Consensus       486 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll  565 (923)
                      |.|+..+.                               .+.++.|++.|++++..+..|.||||+|+..|+.+++++|+
T Consensus       184 ~~A~~~~~-------------------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  232 (437)
T 1n11_A          184 HVAVHHNN-------------------------------LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL  232 (437)
T ss_dssp             HHHHHTTC-------------------------------HHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHcCC-------------------------------HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            98887765                               78888999999999999999999999999999999999999


Q ss_pred             hCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCC
Q psy3899         566 SQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG  645 (923)
Q Consensus       566 ~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g  645 (923)
                      +.|++++..+.. |.||||+|+..|+.+++++|+++|++++..|..|.||||+|++.|+.+++++|+++|++++.+|..|
T Consensus       233 ~~g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g  311 (437)
T 1n11_A          233 QYGGSANAESVQ-GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG  311 (437)
T ss_dssp             HTTCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSC
T ss_pred             HcCCCCCCCCCC-CCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCC
Confidence            999999876554 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhccC
Q psy3899         646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIG  725 (923)
Q Consensus       646 ~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~~~  725 (923)
                      +||||+|+..| +.+++++|+++|++++.+|. .|+||||+|+..|+.++|++|+++|+|++.+|.+|+||+++|.+.+.
T Consensus       312 ~t~L~~A~~~g-~~~~v~~Ll~~gad~n~~~~-~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~  389 (437)
T 1n11_A          312 YTPLHVASHYG-NIKLVKFLLQHQADVNAKTK-LGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY  389 (437)
T ss_dssp             CCHHHHHHHSS-CSHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcC-cHHHHHHHHhcCCCCCCCCC-CCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCc
Confidence            99999999988 89999999999999999998 99999999999999999999999999999999999999999998754

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-57  Score=521.80  Aligned_cols=372  Identities=25%  Similarity=0.306  Sum_probs=345.9

Q ss_pred             CccccccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccc
Q psy3899           1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL   80 (923)
Q Consensus         1 v~~Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~   80 (923)
                      |++|+++|+++|..+.. |.||||+||..|+.++|++|+++|++++.+|.+|+||||+|+..|+.++|++|+++|++++.
T Consensus        30 v~~Ll~~g~~~~~~~~~-~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~  108 (437)
T 1n11_A           30 VKNLLQRGASPNVSNVK-VETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL  108 (437)
T ss_dssp             HHHHHHTTCCSCCSSSC-CCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred             HHHHHHcCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCC
Confidence            57899999999999876 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHH
Q psy3899          81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLL  160 (923)
Q Consensus        81 ~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A  160 (923)
                      .|..|.||||+|+..|+ .+++++|++.|++++..+. .|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus       109 ~~~~g~t~L~~A~~~g~-~~~v~~Ll~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  186 (437)
T 1n11_A          109 ATTAGHTPLHIAAREGH-VETVLALLEKEASQACMTK-KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVA  186 (437)
T ss_dssp             CCTTCCCHHHHHHHHTC-HHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHH
T ss_pred             CCCCCCcHHHHHHHcCC-HHHHHHHHhCCCCCcCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Confidence            99999999999999995 9999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCchhhhhHHHHHHhhhhhhhhhHhhhcccchhhhhHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy3899         161 EENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVM  240 (923)
Q Consensus       161 ~~~g~~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (923)
                      +..|+.+     ++++|++...                                                          
T Consensus       187 ~~~~~~~-----~v~~Ll~~g~----------------------------------------------------------  203 (437)
T 1n11_A          187 VHHNNLD-----IVKLLLPRGG----------------------------------------------------------  203 (437)
T ss_dssp             HHTTCHH-----HHHHHGGGTC----------------------------------------------------------
T ss_pred             HHcCCHH-----HHHHHHhCCC----------------------------------------------------------
Confidence            9999999     8888875000                                                          


Q ss_pred             HHhhhhccccccccccchhhhhhhHHHhhhhHHHhhhhhhhHHHHHhhhhhhhHHHHhhhhhccCCCccccCChhhHHHH
Q psy3899         241 QVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRY  320 (923)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (923)
                                                                                       ++.            
T Consensus       204 -----------------------------------------------------------------~~~------------  206 (437)
T 1n11_A          204 -----------------------------------------------------------------SPH------------  206 (437)
T ss_dssp             -----------------------------------------------------------------CSC------------
T ss_pred             -----------------------------------------------------------------CCC------------
Confidence                                                                             000            


Q ss_pred             HHHHHhcCCCCCCccccccccccCCcCcCccchhhHhhccCCCCccccccccCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3899         321 IIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKY  400 (923)
Q Consensus       321 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  400 (923)
                                                                                                      
T Consensus       207 --------------------------------------------------------------------------------  206 (437)
T 1n11_A          207 --------------------------------------------------------------------------------  206 (437)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhccccccchhhHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhccccccccCCCCC
Q psy3899         401 WKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQ  480 (923)
Q Consensus       401 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (923)
                                                                                                 .+...
T Consensus       207 ---------------------------------------------------------------------------~~~~~  211 (437)
T 1n11_A          207 ---------------------------------------------------------------------------SPAWN  211 (437)
T ss_dssp             ---------------------------------------------------------------------------CCCTT
T ss_pred             ---------------------------------------------------------------------------CcCCC
Confidence                                                                                       00223


Q ss_pred             CCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCcHHH
Q psy3899         481 FISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEI  560 (923)
Q Consensus       481 ~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~  560 (923)
                      |.||||.|+..+.                               .+.++.|++.|++++..+..|.||||+|+..|+.++
T Consensus       212 g~t~L~~A~~~~~-------------------------------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~  260 (437)
T 1n11_A          212 GYTPLHIAAKQNQ-------------------------------VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEM  260 (437)
T ss_dssp             CCCHHHHHHHTTC-------------------------------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             CCCHHHHHHHcCC-------------------------------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHH
Confidence            5688888887665                               788999999999999999999999999999999999


Q ss_pred             HHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCc
Q psy3899         561 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL  640 (923)
Q Consensus       561 v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~  640 (923)
                      +++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++|.
T Consensus       261 v~~Ll~~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~  339 (437)
T 1n11_A          261 VALLLSKQANGNLGNKS-GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA  339 (437)
T ss_dssp             HHHHHTTTCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTC
T ss_pred             HHHHHhcCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCC
Confidence            99999999999876554 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCC
Q psy3899         641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS  704 (923)
Q Consensus       641 ~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~ga  704 (923)
                      +|..|+||||+|+..| +.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|.....
T Consensus       340 ~~~~g~t~L~~A~~~g-~~~iv~~Ll~~ga~~~~~~~-~g~t~l~~A~~~g~~~~~~~l~~~~~  401 (437)
T 1n11_A          340 KTKLGYSPLHQAAQQG-HTDIVTLLLKNGASPNEVSS-DGTTPLAIAKRLGYISVTDVLKVVTD  401 (437)
T ss_dssp             CCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCSCCCCS-SSCCHHHHHHHTTCHHHHHHHHHHCC
T ss_pred             CCCCCCCHHHHHHHCC-hHHHHHHHHHCcCCCCCCCC-CCCCHHHHHHHcCcHHHHHHHHhccc
Confidence            9999999999999998 89999999999999999998 99999999999999999999976543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=4.5e-46  Score=410.60  Aligned_cols=299  Identities=25%  Similarity=0.262  Sum_probs=266.8

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCC-CChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcC
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSE-GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF   97 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~-g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~   97 (923)
                      |+||||.||+.|++++|++||++|+++|.++.+ |+||||+||..||.++|++|+++|++++.++..+.+|++.++..+ 
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~-  103 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG-  103 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT-
T ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc-
Confidence            789999999999999999999999999998764 899999999999999999999999999999999999999999998 


Q ss_pred             CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHH
Q psy3899          98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI  177 (923)
Q Consensus        98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L  177 (923)
                      ...++..+++.+++++..|. .|.||||+|+..|+.+++++|+++|++++..+..+.                       
T Consensus       104 ~~~~~~~~~~~~~~~~~~d~-~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~-----------------------  159 (337)
T 4g8k_A          104 SVKLLKLFLSKGADVNECDF-YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE-----------------------  159 (337)
T ss_dssp             CHHHHHHHHTTTCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC------------------------
T ss_pred             cchhhHHhhhccchhhhhcc-CCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcccc-----------------------
Confidence            49999999999999999999 999999999999999999999999988654332110                       


Q ss_pred             HHHHhhhhhhhhhHhhhcccchhhhhHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q psy3899         178 TELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILP  257 (923)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (923)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (337)
T 4g8k_A          160 --------------------------------------------------------------------------------  159 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhhHHHhhhhHHHhhhhhhhHHHHHhhhhhhhHHHHhhhhhccCCCccccCChhhHHHHHHHHHhcCCCCCCcccc
Q psy3899         258 LPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCS  337 (923)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  337 (923)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (337)
T 4g8k_A          160 --------------------------------------------------------------------------------  159 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCcCcCccchhhHhhccCCCCccccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHH
Q psy3899         338 TCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMF  417 (923)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~  417 (923)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (337)
T 4g8k_A          160 --------------------------------------------------------------------------------  159 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhccccccccCCCCCCCCcccccccccccccc
Q psy3899         418 VVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFT  497 (923)
Q Consensus       418 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  497 (923)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (337)
T 4g8k_A          160 --------------------------------------------------------------------------------  159 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHh-CCCcccccCC
Q psy3899         498 GWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFIS-QGAIVDAIGG  576 (923)
Q Consensus       498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~~  576 (923)
                                                             +.+..+..|.||||+|+..|+.+++++|++ .|++++..+.
T Consensus       160 ---------------------------------------~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~  200 (337)
T 4g8k_A          160 ---------------------------------------DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN  200 (337)
T ss_dssp             -------------------------------------------CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCT
T ss_pred             ---------------------------------------ccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCC
Confidence                                                   011234578999999999999999999995 6999998765


Q ss_pred             CCCchHHHHHHHcCC----HHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHc-CCCCCccCCCCCcHHHH
Q psy3899         577 DLQATPLHWATRQGH----LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMW  651 (923)
Q Consensus       577 ~~g~t~Lh~A~~~g~----~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~Lh~  651 (923)
                      . |.||+|.++..++    .+++++|+++|++++.+|..|.||||+|++.|+.++++.|++. |++++.+|..|+||||+
T Consensus       201 ~-g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~  279 (337)
T 4g8k_A          201 M-GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL  279 (337)
T ss_dssp             T-SCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHH
T ss_pred             C-CCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHH
Confidence            5 9999998876544    4688999999999999999999999999999999999999986 89999999999999999


Q ss_pred             HHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q psy3899         652 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIP  709 (923)
Q Consensus       652 a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~  709 (923)
                      |+..| +.+++++|+++|+++|.      .||||+|+.+|+.++|++||++|||+|..
T Consensus       280 A~~~g-~~~iv~~Ll~~GAd~n~------~~~L~~A~~~~~~~iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          280 AVELK-LKKIAELLCKRGASTDC------GDLVMTARRNYDHSLVKVLLSHGAKEDFH  330 (337)
T ss_dssp             HHHTT-CHHHHHHHHTTSCSSTT------CCHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred             HHHcC-CHHHHHHHHHCCCCCCC------CCHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence            99998 89999999999999864      46999999999999999999999999864

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.2e-45  Score=406.09  Aligned_cols=158  Identities=23%  Similarity=0.266  Sum_probs=147.2

Q ss_pred             ccccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccC
Q psy3899           4 FISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD   82 (923)
Q Consensus         4 Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~-ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d   82 (923)
                      |.+.+++.+..+.. |.|+||.||+.|+.+.|+.|+.. +++++.+|..|+||||+|+..|+.++|++|+++|++++.+|
T Consensus        10 l~~~~~~~~~~~~~-~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~   88 (351)
T 3utm_A           10 LADPSAKAVLTGEY-KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKD   88 (351)
T ss_dssp             --CHHHHHHHHHHH-HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             ccCCceeeeeeccc-cchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence            45566677776655 99999999999999999999876 89999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHh
Q psy3899          83 RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEE  162 (923)
Q Consensus        83 ~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~  162 (923)
                      ..|.||||+|+..|+ .+++++|+++|++++..|. .|.||||+|+..|+.++|++|+++|++++..+..|.||+++|+.
T Consensus        89 ~~g~t~L~~A~~~g~-~~iv~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~  166 (351)
T 3utm_A           89 KGGLVPLHNACSYGH-YEVTELLLKHGACVNAMDL-WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPT  166 (351)
T ss_dssp             TTCCCHHHHHHHTTC-HHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSS
T ss_pred             CCCCcHHHHHHHCCC-HHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhh
Confidence            999999999999995 9999999999999999998 99999999999999999999999999999999999999999886


Q ss_pred             hc
Q psy3899         163 NI  164 (923)
Q Consensus       163 ~g  164 (923)
                      .+
T Consensus       167 ~~  168 (351)
T 3utm_A          167 PE  168 (351)
T ss_dssp             HH
T ss_pred             hh
Confidence            64

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=4e-42  Score=378.99  Aligned_cols=164  Identities=26%  Similarity=0.296  Sum_probs=152.7

Q ss_pred             CccccccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccc
Q psy3899           1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL   80 (923)
Q Consensus         1 v~~Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~   80 (923)
                      |++||++|+|||.+++..|.||||+||..|+.++|++||++|++++.+|..+.+|++.|+..++..+++.+++.+++++.
T Consensus        41 V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (337)
T 4g8k_A           41 VQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNE  120 (337)
T ss_dssp             HHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC
T ss_pred             HHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhh
Confidence            57899999999999887799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccc---------cCCCcHHHHHHHhCcHHHHHHHHh-cCCCCCCCC
Q psy3899          81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK---------IHGNVALHWAIYAKNHVAITTLVS-HTSSLEIPN  150 (923)
Q Consensus        81 ~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~---------~~g~T~L~~A~~~g~~~iv~~Ll~-~ga~~~~~~  150 (923)
                      .|..|.||||+|+..|+ .+++++|+++|++++..+.         ..|.||||+|+..|+.++|++|++ .|++++.+|
T Consensus       121 ~d~~g~t~l~~A~~~~~-~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d  199 (337)
T 4g8k_A          121 CDFYGFTAFMEAAVYGK-VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD  199 (337)
T ss_dssp             BCTTCCBHHHHHHHTTC-HHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCC
T ss_pred             hccCCCCHHHHHHHcCc-HHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccC
Confidence            99999999999999994 9999999999999875432         158999999999999999999996 589999999


Q ss_pred             CCCCChHHHHHhhcC
Q psy3899         151 AQGLTPFMLLEENIG  165 (923)
Q Consensus       151 ~~g~t~L~~A~~~g~  165 (923)
                      ..|.|+++.++..+.
T Consensus       200 ~~g~t~l~~~~~~~~  214 (337)
T 4g8k_A          200 NMGRNALIHALLSSD  214 (337)
T ss_dssp             TTSCCHHHHHHHHSC
T ss_pred             CCCCcHHHHHHHHcC
Confidence            999999998876543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-41  Score=365.68  Aligned_cols=129  Identities=24%  Similarity=0.286  Sum_probs=124.0

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcC
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADPTLM-DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF   97 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~-d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~   97 (923)
                      |.||||.|++.|+.++|+.|++.|++++.+ +..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| 
T Consensus         5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-   83 (285)
T 1wdy_A            5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG-   83 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT-
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC-
Confidence            889999999999999999999999999988 888999999999999999999999999999999999999999999999 


Q ss_pred             CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCC
Q psy3899          98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIP  149 (923)
Q Consensus        98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~  149 (923)
                      +.+++++|+++|++++..|. .|.||||+|+..|+.+++++|+++|++++..
T Consensus        84 ~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~  134 (285)
T 1wdy_A           84 SVKLLKLFLSKGADVNECDF-YGFTAFMEAAVYGKVKALKFLYKRGANVNLR  134 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CHHHHHHHHHcCCCCCccCc-ccCCHHHHHHHhCCHHHHHHHHHhCCCcccc
Confidence            59999999999999999998 9999999999999999999999999887554

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.8e-42  Score=381.35  Aligned_cols=133  Identities=20%  Similarity=0.177  Sum_probs=122.6

Q ss_pred             HcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHC-CCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCccccccc
Q psy3899          40 QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI  118 (923)
Q Consensus        40 ~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~-ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~  118 (923)
                      +.+++.+..+..|.|+||.||+.|+.+.++.|+.. +++++.+|..|.||||+|+..|+ .+++++|+++|++++.+|. 
T Consensus        12 ~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~-~~~v~~Ll~~g~~~~~~~~-   89 (351)
T 3utm_A           12 DPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNR-VRIVQLLLQHGADVHAKDK-   89 (351)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTC-HHHHHHHHHTTCCTTCCCT-
T ss_pred             CCceeeeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCCCccCC-
Confidence            33445555677889999999999999999988875 89999999999999999999994 9999999999999999999 


Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899         119 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  179 (923)
Q Consensus       119 ~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~  179 (923)
                      .|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+     ++++|++
T Consensus        90 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~-----~v~~Ll~  145 (351)
T 3utm_A           90 GGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVE-----VCSLLLS  145 (351)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH-----HHHHHHH
T ss_pred             CCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH-----HHHHHHH
Confidence            9999999999999999999999999999999999999999999999888     8888876

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-40  Score=356.47  Aligned_cols=123  Identities=22%  Similarity=0.250  Sum_probs=117.2

Q ss_pred             CCCChHHHHHHHhCcHHHHHHHHHCCCccccc-CCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHH
Q psy3899          50 SEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ-DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI  128 (923)
Q Consensus        50 ~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~-d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~  128 (923)
                      .+|.||||.|++.|+.+++++|+++|++++.. +..|.||||+|+..| +.+++++|++.|++++.+|. .|.||||+|+
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~   80 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS-REDIVELLLRHGADPVLRKK-NGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TCCCHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCcccCC-CCCCHHHHHH
Confidence            35889999999999999999999999999998 888999999999999 59999999999999999998 9999999999


Q ss_pred             HhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899         129 YAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  179 (923)
Q Consensus       129 ~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~  179 (923)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..|+.+     ++++|++
T Consensus        81 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~-----~~~~Ll~  126 (285)
T 1wdy_A           81 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK-----ALKFLYK  126 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHH-----HHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHH-----HHHHHHH
Confidence            999999999999999999999999999999999999888     8888776

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-40  Score=372.32  Aligned_cols=171  Identities=26%  Similarity=0.328  Sum_probs=146.6

Q ss_pred             HhcCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHhCC---CcccccCCCCCchHHHHHHHcC---CHHHHHHHHHCCCCCC
Q psy3899         533 EAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQG---AIVDAIGGDLQATPLHWATRQG---HLDSVVLLIQHGADPT  606 (923)
Q Consensus       533 ~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g---~~~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~g~~~~  606 (923)
                      +.|++++..|..|.||||+|+..|+.+++++|++++   ++++..+.. |.||||+|+..+   +.+++++|+++|++++
T Consensus       187 ~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~-g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~  265 (373)
T 2fo1_E          187 KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN-GMTALMIVAHNEGRDQVASAKLLVEKGAKVD  265 (373)
T ss_dssp             HTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTT-SCCHHHHHHHSCSTTHHHHHHHHHHHTCCSS
T ss_pred             HCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCC-CCCHHHHHHHhCCcchHHHHHHHHHCCCCcc
Confidence            345566777788889999999999999999998887   677765544 889999988887   7888999999888887


Q ss_pred             C--------CCCCCChHHHHHHHcCcHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCccccc
Q psy3899         607 L--------MDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK  677 (923)
Q Consensus       607 ~--------~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~  677 (923)
                      .        .|..|.||||+|+..|+.+++++|++++ ++++.+|..|.||||+|+..| +.+++++|+++|++++.+|.
T Consensus       266 ~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g-~~~iv~~Ll~~gad~~~~d~  344 (373)
T 2fo1_E          266 YDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG-RIEVVMYLIQQGASVEAVDA  344 (373)
T ss_dssp             CCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHT-CHHHHHHHHHTTCCSSCCCS
T ss_pred             cccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCccCCCC
Confidence            5        5778999999999999999999999875 999999999999999999888 89999999999999999998


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCC
Q psy3899         678 IHGNVALHWAIYAKNHVAITTLVSHTSSL  706 (923)
Q Consensus       678 ~~g~TpLh~A~~~~~~~~v~~Ll~~gad~  706 (923)
                       .|+||||+|+.+|+.+++++|+++|++.
T Consensus       345 -~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          345 -TDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             -SSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             -CCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence             8999999999999999999999998763

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.9e-39  Score=346.51  Aligned_cols=149  Identities=17%  Similarity=0.137  Sum_probs=109.2

Q ss_pred             CCCCccHHHHHHHcCCHHHHHHHHHcC-----------CCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCC
Q psy3899          16 GDLQATPLHWATRQGHLDSVVLLIQHG-----------ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN   84 (923)
Q Consensus        16 ~~~g~T~Lh~Aa~~g~~~~V~~Ll~~g-----------a~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~   84 (923)
                      ...|.|+||+|+..|+.+.+..++..+           -.++.+|.+|+||||+||..|+.+++++|+++|++++.+|.+
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~   91 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD   91 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTT
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence            345899999999999987777765442           235668899999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhc
Q psy3899          85 GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI  164 (923)
Q Consensus        85 g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g  164 (923)
                      |.||||+|+..| +.+++++|+++|++++.+|. .|.||||+|+..|+.++|++|+++|++++..+ .|.||||+|+..|
T Consensus        92 g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g  168 (285)
T 3d9h_A           92 HVSPLHEACLGG-HLSCVKILLKHGAQVNGVTA-DWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRG  168 (285)
T ss_dssp             CCCHHHHHHHTT-CHHHHHHHHHTTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHT
T ss_pred             CCCHHHHHHHCC-cHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcC
Confidence            999999999999 49999999999999999998 99999999999999999999999998876544 4788888887776


Q ss_pred             CCC
Q psy3899         165 GAP  167 (923)
Q Consensus       165 ~~~  167 (923)
                      +.+
T Consensus       169 ~~~  171 (285)
T 3d9h_A          169 HVE  171 (285)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            555

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.4e-39  Score=359.22  Aligned_cols=193  Identities=23%  Similarity=0.293  Sum_probs=181.8

Q ss_pred             HHHHhcCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCC---CCCC
Q psy3899         530 QFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG---ADPT  606 (923)
Q Consensus       530 ~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g---~~~~  606 (923)
                      .+++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|   ++++
T Consensus       151 ~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~  229 (373)
T 2fo1_E          151 ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKS-ERSALHQAAANRDFGMMVYMLNSTKLKGDIE  229 (373)
T ss_dssp             HHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT-CCCHHHHHHHTTCHHHHHHHTTSHHHHHTTS
T ss_pred             HHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCC-CCCHHHHHHHCCCHHHHHHHHhcCccccChh
Confidence            355778899999999999999999999999999999999999977654 999999999999999999999998   8999


Q ss_pred             CCCCCCChHHHHHHHcC---cHHHHHHHHHcCCCCCc--------cCCCCCcHHHHHHHhhCCcchHHHHHhcC-CCCcc
Q psy3899         607 LMDSEGSTCIHQAAQFG---HTRIVAYLVAKGINVNL--------QDRNGMTALMWSAYKVFSLDPTRLLITFG-ASTTI  674 (923)
Q Consensus       607 ~~d~~g~t~Lh~A~~~~---~~~~v~~Ll~~g~~~~~--------~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~g-a~~~~  674 (923)
                      ..|..|.||||+|+..+   +.+++++|+++|++++.        .|..|.||||+|+..| +.+++++|++.+ ++++.
T Consensus       230 ~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~n~  308 (373)
T 2fo1_E          230 ELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS-NMPIVKYLVGEKGSNKDK  308 (373)
T ss_dssp             CCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSC-CHHHHHHHHHHSCCCTTC
T ss_pred             hcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhC-CHHHHHHHHHhcCCCccC
Confidence            99999999999999998   89999999999999886        6779999999999988 899999999876 99999


Q ss_pred             cccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhccC
Q psy3899         675 QDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIG  725 (923)
Q Consensus       675 ~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~~~  725 (923)
                      +|. .|+||||+|+..|+.++|++|+++|++++.+|..|+||+++|+.+++
T Consensus       309 ~d~-~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~  358 (373)
T 2fo1_E          309 QDE-DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH  358 (373)
T ss_dssp             CCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC
T ss_pred             cCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCC
Confidence            998 99999999999999999999999999999999999999999999864

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.4e-39  Score=362.68  Aligned_cols=163  Identities=24%  Similarity=0.295  Sum_probs=143.8

Q ss_pred             cCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCC
Q psy3899           7 QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGM   86 (923)
Q Consensus         7 ~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~   86 (923)
                      .+.+++..|.. |.||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++.  .+|.
T Consensus         9 ~~~~~~~~d~~-g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~   85 (364)
T 3ljn_A            9 PKLNRIKSDDE-NMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQ   85 (364)
T ss_dssp             -------CCHH-HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTB
T ss_pred             cCCCccccCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCC
Confidence            45678888766 99999999999999999999999999999999999999999999999999999999996655  4699


Q ss_pred             cHHHHHHHhcCCCchhHHHHhc----CCCccc-----------------ccccCCCcHHHHHHHhC--cHHHHHHHHhcC
Q psy3899          87 TALMWSAYKVFSLDPTRLLITF----GASTTI-----------------QDKIHGNVALHWAIYAK--NHVAITTLVSHT  143 (923)
Q Consensus        87 TpL~~Aa~~g~~~~vv~lLl~~----ga~~~~-----------------~d~~~g~T~L~~A~~~g--~~~iv~~Ll~~g  143 (923)
                      ||||+|+..|+ .+++++|++.    |++++.                 .|. .|.||||+|+..|  +.++|++|+++|
T Consensus        86 t~L~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~~~v~~Ll~~g  163 (364)
T 3ljn_A           86 KPIHLAVMANK-TDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHC-KGQTALHWCVGLGPEYLEMIKILVQLG  163 (364)
T ss_dssp             CHHHHHHHTTC-HHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEE-SCCCHHHHHHHSCGGGHHHHHHHHHHT
T ss_pred             CHHHHHHHcCC-HHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCC-CCCCHHHHHHHcCCchHHHHHHHHHcC
Confidence            99999999995 9999999999    888887                 888 8999999999999  999999999999


Q ss_pred             CCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899         144 SSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  179 (923)
Q Consensus       144 a~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~  179 (923)
                      ++++.+|..|.||||+|+..|+.+     ++++|++
T Consensus       164 a~~~~~d~~g~t~L~~A~~~g~~~-----~v~~Ll~  194 (364)
T 3ljn_A          164 ASPTAKDKADETPLMRAMEFRNRE-----ALDLMMD  194 (364)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHH-----HHHHHHH
T ss_pred             CCCcccCCCCCCHHHHHHHcCCHH-----HHHHHHh
Confidence            999999999999999999988887     7777665

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.9e-39  Score=361.77  Aligned_cols=166  Identities=19%  Similarity=0.206  Sum_probs=142.1

Q ss_pred             CCCCCCCCcHhHHHHHcC--cHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCC
Q psy3899         539 NEPDSETVTLLHWAAINN--RIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD-----PTLMDSE  611 (923)
Q Consensus       539 ~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~-----~~~~d~~  611 (923)
                      +..|..|.||||+|+..|  +.+++++|+++|++++..+.. |.||||+|+..|+.++|++|+++|++     ++..|..
T Consensus       132 ~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~  210 (364)
T 3ljn_A          132 HVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA-DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ  210 (364)
T ss_dssp             EEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTT
T ss_pred             ccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCC-CCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCC
Confidence            345567889999999999  899999999999998876544 88999999999999999999988888     8888899


Q ss_pred             CChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcc------------cccCC
Q psy3899         612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTI------------QDKIH  679 (923)
Q Consensus       612 g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~------------~d~~~  679 (923)
                      |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++.            .+. .
T Consensus       211 g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~-~  288 (364)
T 3ljn_A          211 GNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAA-MVLLTKELLQKTDVFLIQACPYHNGTTVLPDR-V  288 (364)
T ss_dssp             CCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTC-CHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGG-C
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC-hHHHHHHHHHcCCchhhhcCcccCcccccccc-c
Confidence            999999999999999999999999999999999999999999887 88999999998877543            344 7


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy3899         680 GNVALHWAIYAKNHVAITTLVSHTSSLE  707 (923)
Q Consensus       680 g~TpLh~A~~~~~~~~v~~Ll~~gad~~  707 (923)
                      |+|||++|+..|+.+.+..|++.++|..
T Consensus       289 ~~~~l~~aa~~~~~~~v~~ll~~~~~~~  316 (364)
T 3ljn_A          289 VWLDFVPAAADPSKQEVLQLLQEKLDEV  316 (364)
T ss_dssp             CCCTTSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhccCHHHHHHHHHHHHHHH
Confidence            9999999999999998888888876543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4e-38  Score=337.71  Aligned_cols=116  Identities=16%  Similarity=0.003  Sum_probs=53.5

Q ss_pred             CCCChHHHHHHHhCcHHHHHHHHHCC-----------CcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCccccccc
Q psy3899          50 SEGSTCIHQAAQFGHTRIVAYLVAKG-----------INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI  118 (923)
Q Consensus        50 ~~g~TpLh~Aa~~g~~~iv~~Ll~~g-----------a~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~  118 (923)
                      ..|.|+||+|+..|+.+.+..+++.+           ..++.+|.+|+||||+||..| +.+++++|++.|++++.+|. 
T Consensus        13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g-~~~~v~~Ll~~g~~~~~~~~-   90 (285)
T 3d9h_A           13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHG-HQLSLRNLISQGWAVNIITA-   90 (285)
T ss_dssp             -----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTT-CHHHHHHHHHTTCCSCEECT-
T ss_pred             hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcC-CHHHHHHHHHCCCCCCCcCC-
Confidence            45677777777777755555544432           124455566666666666666 36666666666666666665 


Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCC
Q psy3899         119 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAP  167 (923)
Q Consensus       119 ~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~  167 (923)
                      .|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+
T Consensus        91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~  139 (285)
T 3d9h_A           91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWD  139 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHH
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHH
Confidence            6666666666666666666666666665555555555555555554433

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=7.4e-38  Score=335.48  Aligned_cols=124  Identities=22%  Similarity=0.212  Sum_probs=104.2

Q ss_pred             HhcCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy3899         533 EAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEG  612 (923)
Q Consensus       533 ~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g  612 (923)
                      ..+.+++.++..|.||||+|+..|+.+++++|+++|++++..+...|.||||+|+..|+.++|++|+++|++++.+|..|
T Consensus       146 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g  225 (282)
T 1oy3_D          146 DWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGG  225 (282)
T ss_dssp             CGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             hhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Confidence            34567888999999999999999999999999999999998876669999999999999999999999999999999999


Q ss_pred             ChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhh
Q psy3899         613 STCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV  656 (923)
Q Consensus       613 ~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~  656 (923)
                      .||||+|++.|+.+++++|+++|++++.+|..|.|||++|....
T Consensus       226 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          226 RTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             CCHHHHHHTSSCHHHHHHHHHTTCCCCCCC--------------
T ss_pred             CCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence            99999999999999999999999999999999999999988654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=4.6e-37  Score=323.59  Aligned_cols=98  Identities=29%  Similarity=0.370  Sum_probs=75.2

Q ss_pred             CCCCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChH
Q psy3899         536 QDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTC  615 (923)
Q Consensus       536 ~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~  615 (923)
                      ++++.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus       148 ~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~-g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp  226 (253)
T 1yyh_A          148 ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR-EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP  226 (253)
T ss_dssp             CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCH
Confidence            445556667778888888888888888888888887765544 7888888888888888888888888888888888888


Q ss_pred             HHHHHHcCcHHHHHHHHHc
Q psy3899         616 IHQAAQFGHTRIVAYLVAK  634 (923)
Q Consensus       616 Lh~A~~~~~~~~v~~Ll~~  634 (923)
                      ||+|++.|+.+++++|...
T Consensus       227 l~~A~~~g~~~i~~~l~~~  245 (253)
T 1yyh_A          227 RDIAQERMHHDIVRLLDLE  245 (253)
T ss_dssp             HHHHHHTTCHHHHHHHHC-
T ss_pred             HHHHHHcCCHHHHHHHHHH
Confidence            8888888888888887765

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.2e-35  Score=309.67  Aligned_cols=153  Identities=25%  Similarity=0.307  Sum_probs=106.6

Q ss_pred             cccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcH
Q psy3899           9 AIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA   88 (923)
Q Consensus         9 ~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~Tp   88 (923)
                      .|++..+.. |.||||+||..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus         2 ~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   80 (237)
T 3b7b_A            2 MNFKMEHQN-KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC   80 (237)
T ss_dssp             CCCCCSSCC-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCH
T ss_pred             CCcccccCC-CCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH
Confidence            355666554 7777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhcCCCchhHHHHhcC-CCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhc
Q psy3899          89 LMWSAYKVFSLDPTRLLITFG-ASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI  164 (923)
Q Consensus        89 L~~Aa~~g~~~~vv~lLl~~g-a~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g  164 (923)
                      ||+|+..| +.+++++|++.| ++++..|. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus        81 L~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  155 (237)
T 3b7b_A           81 LHLAAKKG-HYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSG  155 (237)
T ss_dssp             HHHHHHTT-CHHHHHHHHTTTCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHC
T ss_pred             HHHHHHcC-CHHHHHHHHhCCCCCcccCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCC
Confidence            77777776 377777777776 66666666 6777777777777777777777766665555555555555555443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.9e-36  Score=314.97  Aligned_cols=150  Identities=25%  Similarity=0.301  Sum_probs=111.0

Q ss_pred             ccccCCCCccHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCc
Q psy3899          12 DAIGGDLQATPLHWATRQGHLDSVVLLIQ----HGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT   87 (923)
Q Consensus        12 n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~----~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~T   87 (923)
                      +.+|.+ |+||||+||..|+.++|+.|++    .|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus         3 ~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t   81 (241)
T 1k1a_A            3 TRADED-GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT   81 (241)
T ss_dssp             ----CT-TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cccCCC-CCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence            445554 8888888888888888888876    57788888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhcCCCchhHHHHhcCC----CcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCC-CCCCChHHHHHh
Q psy3899          88 ALMWSAYKVFSLDPTRLLITFGA----STTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPN-AQGLTPFMLLEE  162 (923)
Q Consensus        88 pL~~Aa~~g~~~~vv~lLl~~ga----~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~-~~g~t~L~~A~~  162 (923)
                      |||+|+..| +.+++++|++.|+    +++..|. .|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus        82 ~l~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~  159 (241)
T 1k1a_A           82 AAHLACEHR-SPTCLRALLDSAAPGTLDLEARNY-DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE  159 (241)
T ss_dssp             HHHHHHHTT-CHHHHHHHHHHSCTTSCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred             HHHHHHHcC-CHHHHHHHHHcCCCccccccccCc-CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Confidence            888888777 4788888888776    6777777 77888888888888888888887777665554 445555555554


Q ss_pred             hc
Q psy3899         163 NI  164 (923)
Q Consensus       163 ~g  164 (923)
                      .|
T Consensus       160 ~~  161 (241)
T 1k1a_A          160 NN  161 (241)
T ss_dssp             TT
T ss_pred             cC
Confidence            43

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=7.2e-36  Score=314.47  Aligned_cols=228  Identities=21%  Similarity=0.208  Sum_probs=176.1

Q ss_pred             CCCCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCC-CCCCCCcHhHHHHHcC
Q psy3899         478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNE-PDSETVTLLHWAAINN  556 (923)
Q Consensus       478 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~~g~t~Lh~A~~~g  556 (923)
                      +..|.||||.|+..+....                  ....+....+.+.++.|++.|++++. .|..|.||||+|+..|
T Consensus         7 d~~g~tpL~~A~~~g~~~~------------------~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g   68 (253)
T 1yyh_A            7 GPDGFTPLMIASCSGGGLE------------------TGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS   68 (253)
T ss_dssp             ---------------------------------------------------------------CCCTTSCCHHHHHHHTT
T ss_pred             CCCCCcHHHHHHhcccccc------------------ccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcC
Confidence            4568899999998763110                  00113344568999999999999865 4899999999999999


Q ss_pred             cHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCChHHHHHHHcCcHHHHHHHHHcC
Q psy3899         557 RIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA-DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG  635 (923)
Q Consensus       557 ~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g  635 (923)
                      +.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|+ +++.+|..|.||||+|+..|+.+++++|++.|
T Consensus        69 ~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  147 (253)
T 1yyh_A           69 RSDAAKRLLEASADANIQDNM-GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH  147 (253)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTT
T ss_pred             CHHHHHHHHHcCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcC
Confidence            999999999999999987654 9999999999999999999999987 99999999999999999999999999999999


Q ss_pred             CCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC
Q psy3899         636 INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLT  715 (923)
Q Consensus       636 ~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t  715 (923)
                      ++++.+|..|.||||+|+..+ +.+++++|+++|++++.+|. .|+||||+|+..|+.+++++|+++|++++.+|..|+|
T Consensus       148 ~~~~~~d~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t  225 (253)
T 1yyh_A          148 ADVNAVDDLGKSALHWAAAVN-NVDAAVVLLKNGANKDMQNN-REETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL  225 (253)
T ss_dssp             CCTTCBCTTSCBHHHHHHHHT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             CCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCC
Confidence            999999999999999999998 89999999999999999998 9999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCC
Q psy3899         716 PFMLLEENIGA  726 (923)
Q Consensus       716 pl~~a~~~~~~  726 (923)
                      |+++|+++++.
T Consensus       226 pl~~A~~~g~~  236 (253)
T 1yyh_A          226 PRDIAQERMHH  236 (253)
T ss_dssp             HHHHHHHTTCH
T ss_pred             HHHHHHHcCCH
Confidence            99999998653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.5e-35  Score=307.11  Aligned_cols=214  Identities=27%  Similarity=0.409  Sum_probs=204.3

Q ss_pred             CCCCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCc
Q psy3899         478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNR  557 (923)
Q Consensus       478 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~  557 (923)
                      +..|.||||.|+..+.                               .+.++.|++.|++++..+..|.||||+|+..|+
T Consensus         8 ~~~g~t~L~~A~~~g~-------------------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   56 (237)
T 3b7b_A            8 HQNKRSPLHAAAEAGH-------------------------------VDICHMLVQAGANIDTCSEDQRTPLMEAAENNH   56 (237)
T ss_dssp             SCCSCCHHHHHHHHTC-------------------------------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             cCCCCCHHHHHHHcCc-------------------------------HHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCC
Confidence            5678999999998875                               788999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCC
Q psy3899         558 IEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG-ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI  636 (923)
Q Consensus       558 ~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~  636 (923)
                      .+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++| ++++..|..|.||||+|+..|+.+++++|+++|+
T Consensus        57 ~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  135 (237)
T 3b7b_A           57 LEAVKYLIKAGALVDPKDAE-GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS  135 (237)
T ss_dssp             HHHHHHHHTTTCCCCCCCTT-SCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            99999999999999876654 999999999999999999999998 8999999999999999999999999999999999


Q ss_pred             CCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Q psy3899         637 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP  716 (923)
Q Consensus       637 ~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tp  716 (923)
                      +++.+|..|.||||+|+..+ +.+++++|++.|++++.+|. .|.||||+|+..|+.+++++|+++|+|++.+|.+|+||
T Consensus       136 ~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~  213 (237)
T 3b7b_A          136 DINIRDNEENICLHWAAFSG-CVDIAEILLAAKCDLHAVNI-HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETP  213 (237)
T ss_dssp             CTTCCCTTSCCHHHHHHHHC-CHHHHHHHHTTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCH
T ss_pred             CCCccCCCCCCHHHHHHHCC-CHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCH
Confidence            99999999999999999998 89999999999999999998 99999999999999999999999999999999999999


Q ss_pred             HHHHHhccC
Q psy3899         717 FMLLEENIG  725 (923)
Q Consensus       717 l~~a~~~~~  725 (923)
                      +++|+.++.
T Consensus       214 l~~A~~~~~  222 (237)
T 3b7b_A          214 LQCASLNSQ  222 (237)
T ss_dssp             HHHSCTTCH
T ss_pred             HHHHHHHHH
Confidence            999998753

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.2e-36  Score=320.25  Aligned_cols=147  Identities=20%  Similarity=0.260  Sum_probs=70.9

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCC--------CCccCCCCChHHHHHHHhCcH-HHHHHHHHCCCcccccCCCCCcHH
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGAD--------PTLMDSEGSTCIHQAAQFGHT-RIVAYLVAKGINVNLQDRNGMTAL   89 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~--------~~~~d~~g~TpLh~Aa~~g~~-~iv~~Ll~~ga~vn~~d~~g~TpL   89 (923)
                      +.|||+.||..|+.++|++||+.|++        ++..|..|.||||.|+..++. +++++|++.|+++|.+|.+|+|||
T Consensus        11 ~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpL   90 (269)
T 4b93_B           11 EVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPL   90 (269)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHH
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            56777777777777777777766654        334455556666666655543 355566666666666666666666


Q ss_pred             HHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCC
Q psy3899          90 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAP  167 (923)
Q Consensus        90 ~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~  167 (923)
                      |+||..| +.+++++|++.|++++..+. .|.||+|+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus        91 h~A~~~g-~~~~v~~Ll~~~a~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~  166 (269)
T 4b93_B           91 HVAALHG-RADLIPLLLKHGANAGARNA-DQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHE  166 (269)
T ss_dssp             HHHHHTT-CTTHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGG
T ss_pred             HHHHHcC-cHHHHHHHHhcCCCcCccCC-CCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence            6666655 35666666666666665555 5666666666666666666666655555555555555555555444333

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.5e-35  Score=317.56  Aligned_cols=213  Identities=19%  Similarity=0.162  Sum_probs=187.8

Q ss_pred             CCCCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCC---CCCCCCCCCcHhHHHHH
Q psy3899         478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQD---VNEPDSETVTLLHWAAI  554 (923)
Q Consensus       478 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~~g~t~Lh~A~~  554 (923)
                      +..|.||||.|+..+.                               .+.++.|++.|++   ++.+|..|.||||+|+.
T Consensus         6 d~~g~t~L~~A~~~g~-------------------------------~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~   54 (282)
T 1oy3_D            6 TEDGDTALHLAVIHQH-------------------------------EPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAI   54 (282)
T ss_dssp             CTTCCCHHHHHHHTTC-------------------------------HHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHH
T ss_pred             CCCCCcHHHHHHHcCC-------------------------------HHHHHHHHhcCCCcccccccCCCCCCHHHHHHH
Confidence            5678999999998876                               7889999999998   88999999999999999


Q ss_pred             cCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCC------------------------------
Q psy3899         555 NNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD------------------------------  604 (923)
Q Consensus       555 ~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~------------------------------  604 (923)
                      .|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++                              
T Consensus        55 ~g~~~~v~~Ll~~ga~~~~~~~~-g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (282)
T 1oy3_D           55 LGEASTVEKLYAAGAGVLVAERG-GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQ  133 (282)
T ss_dssp             HTCHHHHHHHHHTTCCSSCCCTT-SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------------------
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCC-CCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccc
Confidence            99999999999999999977654 99999999999999999999998765                              


Q ss_pred             -----------------CCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCC-CCcHHHHHHHhhCCcchHHHHH
Q psy3899         605 -----------------PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-GMTALMWSAYKVFSLDPTRLLI  666 (923)
Q Consensus       605 -----------------~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~-g~t~Lh~a~~~~~~~~~~~~Ll  666 (923)
                                       ++.+|..|.||||+|+..|+.+++++|+++|++++..+.. |+||||+|+..+ +.+++++|+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~-~~~~v~~Ll  212 (282)
T 1oy3_D          134 PNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ-AASVLELLL  212 (282)
T ss_dssp             ----------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcC-CHHHHHHHH
Confidence                             6778899999999999999999999999999999999865 999999999988 899999999


Q ss_pred             hcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhcc
Q psy3899         667 TFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI  724 (923)
Q Consensus       667 ~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~~  724 (923)
                      ++|++++.+|. .|+||||+|+..|+.+++++|+++|++++.+|.+|.||+++|....
T Consensus       213 ~~gad~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          213 KAGADPTARMY-GGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             HTTCCTTCCCT-TSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC--------------
T ss_pred             HcCCCCccccc-CCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence            99999999998 9999999999999999999999999999999999999999998864

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.9e-34  Score=300.73  Aligned_cols=152  Identities=22%  Similarity=0.308  Sum_probs=140.7

Q ss_pred             cccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccC-CCCCcHH
Q psy3899          11 VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTAL   89 (923)
Q Consensus        11 ~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d-~~g~TpL   89 (923)
                      ++..|+. |.||||.|+..|+.++|+.|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+ ..|.|||
T Consensus         2 ~~~~d~~-~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L   80 (240)
T 3eu9_A            2 MTHIDDY-STWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL   80 (240)
T ss_dssp             CCCCSCG-GGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHH
T ss_pred             ccccccc-cchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChh
Confidence            4556655 9999999999999999999999999999999999999999999999999999999999988665 4599999


Q ss_pred             HHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcC
Q psy3899          90 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIG  165 (923)
Q Consensus        90 ~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~  165 (923)
                      |+|+..| +.+++++|++.|++++..|. .|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++
T Consensus        81 ~~A~~~~-~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~  154 (240)
T 3eu9_A           81 HWATRQG-HLSMVVQLMKYGADPSLIDG-EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH  154 (240)
T ss_dssp             HHHHHHT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             HHHHHcC-CHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC
Confidence            9999999 49999999999999999998 99999999999999999999999999999999999999999987654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.7e-35  Score=304.57  Aligned_cols=146  Identities=22%  Similarity=0.254  Sum_probs=112.9

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhc
Q psy3899          18 LQATPLHWATRQGHLDSVVLLIQHGA-DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV   96 (923)
Q Consensus        18 ~g~T~Lh~Aa~~g~~~~V~~Ll~~ga-~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g   96 (923)
                      .++||||.||..|+.+.|+.|++.+. .++.+|.+|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   84 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG   84 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence            36788888888888888888887753 35667888888888888888888888888888888888888888888888887


Q ss_pred             CCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcC
Q psy3899          97 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIG  165 (923)
Q Consensus        97 ~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~  165 (923)
                       +.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus        85 -~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  151 (231)
T 3aji_A           85 -XDEIVKALLVKGAHVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN  151 (231)
T ss_dssp             -CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             -HHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence             48888888888888888877 78888888888888888888887777666555555555555554443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.2e-35  Score=308.39  Aligned_cols=213  Identities=23%  Similarity=0.289  Sum_probs=199.6

Q ss_pred             CCCCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHH----hcCCCCCCCCCCCcHhHHHH
Q psy3899         478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVE----AGQDVNEPDSETVTLLHWAA  553 (923)
Q Consensus       478 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~----~~~~~~~~~~~g~t~Lh~A~  553 (923)
                      +..|.||||.|+..+.                               .+.++.+++    .|.+++..|..|.||||+|+
T Consensus         6 d~~g~t~L~~A~~~g~-------------------------------~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~   54 (241)
T 1k1a_A            6 DEDGDTPLHIAVVQGN-------------------------------LPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV   54 (241)
T ss_dssp             -CTTCCHHHHHHHTTC-------------------------------HHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred             CCCCCcHHHHHHHcCC-------------------------------HHHHHHHHHHHHhcCCCCCcccccCCCHHHHHH
Confidence            5678999999998886                               556666664    79999999999999999999


Q ss_pred             HcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCChHHHHHHHcCcHHHHH
Q psy3899         554 INNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA----DPTLMDSEGSTCIHQAAQFGHTRIVA  629 (923)
Q Consensus       554 ~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~----~~~~~d~~g~t~Lh~A~~~~~~~~v~  629 (923)
                      ..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++++    +++..|..|.||||+|+..|+.++++
T Consensus        55 ~~~~~~~v~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  133 (241)
T 1k1a_A           55 ITTLPSVVRLLVTAGASPMALDRH-GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQ  133 (241)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCccccCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHH
Confidence            999999999999999999987654 9999999999999999999999987    89999999999999999999999999


Q ss_pred             HHHHcCCCCCccC-CCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy3899         630 YLVAKGINVNLQD-RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEI  708 (923)
Q Consensus       630 ~Ll~~g~~~~~~d-~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~  708 (923)
                      +|+++|++++..| ..|.||||+|+..+ +.+++++|+++|++++.+|. .|+||||+|+..|+.+++++|+++|+|++.
T Consensus       134 ~Ll~~g~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  211 (241)
T 1k1a_A          134 LLLERGADIDAVDIKSGRSPLIHAVENN-SLSMVQLLLQHGANVNAQMY-SGSSALHSASGRGLLPLVRTLVRSGADSSL  211 (241)
T ss_dssp             HHHHTTCCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCBCT-TSCBHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHcCCCcccccccCCCcHHHHHHHcC-CHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHhcCCCCCC
Confidence            9999999999999 88999999999988 89999999999999999998 999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHhcc
Q psy3899         709 PNAQGLTPFMLLEENI  724 (923)
Q Consensus       709 ~d~~g~tpl~~a~~~~  724 (923)
                      +|..|+||+++|++++
T Consensus       212 ~~~~g~tpl~~A~~~~  227 (241)
T 1k1a_A          212 KNCHNDTPLMVARSRR  227 (241)
T ss_dssp             CCTTSCCTTTTCSSHH
T ss_pred             cCCCCCCHHHHHHhcC
Confidence            9999999999998864

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-35  Score=315.15  Aligned_cols=197  Identities=26%  Similarity=0.333  Sum_probs=159.0

Q ss_pred             hhhHHHHHHhcCC--------CCCCCCCCCcHhHHHHHcCcH-HHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHH
Q psy3899         525 LSDKYQFVEAGQD--------VNEPDSETVTLLHWAAINNRI-EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSV  595 (923)
Q Consensus       525 ~~~~~~ll~~~~~--------~~~~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v  595 (923)
                      .+.++.|++.|.+        ++..+..|.||||.|+..++. .++++|++.|+++|..+.. |+||||+|+..|+.++|
T Consensus        24 ~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~-G~TpLh~A~~~g~~~~v  102 (269)
T 4b93_B           24 LEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD-GSSPLHVAALHGRADLI  102 (269)
T ss_dssp             HHHHHHHHTCC----------------------------------------CCCCTTCCCTT-SCCHHHHHHHTTCTTHH
T ss_pred             HHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC-CCCHHHHHHHcCcHHHH
Confidence            7788888877764        567788899999999988875 5889999999999987655 99999999999999999


Q ss_pred             HHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCccc
Q psy3899         596 VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ  675 (923)
Q Consensus       596 ~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~  675 (923)
                      ++|+++|++++.++..|.||+|.|+..++.+++++|++.|++++.+|..|+||||+|+..| +.+++++|+++|+++|.+
T Consensus       103 ~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g-~~~~v~~Ll~~gadvn~~  181 (269)
T 4b93_B          103 PLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGG-HHELVALLLQHGASINAS  181 (269)
T ss_dssp             HHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTT-CGGGHHHHHHTTCCTTCB
T ss_pred             HHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC-CHHHHHHHHHCCCCCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999998 899999999999999999


Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhcc
Q psy3899         676 DKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI  724 (923)
Q Consensus       676 d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~~  724 (923)
                      |. .|+||||+|+..|+.++|++|+++|+|++.+|.+|+|||++|++++
T Consensus       182 ~~-~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          182 NN-KGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             CT-TSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTC
T ss_pred             cc-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCC
Confidence            98 9999999999999999999999999999999999999999998764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=6.1e-35  Score=315.75  Aligned_cols=149  Identities=21%  Similarity=0.248  Sum_probs=133.8

Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCc---------cCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHH
Q psy3899          24 HWATRQGHLDSVVLLIQHGADPTL---------MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY   94 (923)
Q Consensus        24 h~Aa~~g~~~~V~~Ll~~ga~~~~---------~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~   94 (923)
                      +.++..|+.+.++.++..+.++..         .+.+|.||||.||..|+.++|++|+++|+++|..|..|.||||+||.
T Consensus         3 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   82 (299)
T 1s70_B            3 MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACI   82 (299)
T ss_dssp             SHHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            467888889999888887554433         23367799999999999999999999999999999999999999999


Q ss_pred             hcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhh
Q psy3899          95 KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATV  174 (923)
Q Consensus        95 ~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v  174 (923)
                      .| +.+++++|+++|++++.+|. .|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+..++.+     ++
T Consensus        83 ~g-~~~~v~~Ll~~ga~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~-----~~  155 (299)
T 1s70_B           83 DD-NVDMVKFLVENGANINQPDN-EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE-----LL  155 (299)
T ss_dssp             TT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHH-----HH
T ss_pred             cC-CHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHH-----HH
Confidence            99 49999999999999999999 9999999999999999999999999999999999999999999988777     77


Q ss_pred             hHHHH
Q psy3899         175 DKITE  179 (923)
Q Consensus       175 ~~L~~  179 (923)
                      +.++.
T Consensus       156 ~~ll~  160 (299)
T 1s70_B          156 QNEVN  160 (299)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=4e-35  Score=303.55  Aligned_cols=210  Identities=22%  Similarity=0.296  Sum_probs=195.3

Q ss_pred             CCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCC-CCCCCCcHhHHHHHcCcHH
Q psy3899         481 FISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNE-PDSETVTLLHWAAINNRIE  559 (923)
Q Consensus       481 ~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~~g~t~Lh~A~~~g~~~  559 (923)
                      |.||||.|+..+.                               .+.++.+++.+.++.. .|..|.||||+|+..|+.+
T Consensus         2 g~t~L~~A~~~g~-------------------------------~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~   50 (228)
T 2dzn_A            2 SNYPLHQACMENE-------------------------------FFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHE   50 (228)
T ss_dssp             -CCHHHHHHHTTC-------------------------------HHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CccHHHHHHHhCC-------------------------------HHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHH
Confidence            5799999998775                               7888999998887654 8999999999999999999


Q ss_pred             HHHHHHhCC--CcccccCCCCCchHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcC
Q psy3899         560 IMKYFISQG--AIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG--ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG  635 (923)
Q Consensus       560 ~v~~Ll~~g--~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g--~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g  635 (923)
                      ++++|+++|  .+++...+..|.||||+|+..|+.+++++|+++|  ++++..|..|.||||+|+..|+.+++++|+++|
T Consensus        51 ~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  130 (228)
T 2dzn_A           51 ITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG  130 (228)
T ss_dssp             HHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcC
Confidence            999999999  5565534556999999999999999999999998  899999999999999999999999999999999


Q ss_pred             CCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcC-CCCcccccCCCChHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCC
Q psy3899         636 INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFG-ASTTIQDKIHGNVALHWAIYAKNHVAITTLV-SHTSSLEIPNAQG  713 (923)
Q Consensus       636 ~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~g-a~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll-~~gad~~~~d~~g  713 (923)
                      ++++.+|..|.||||+|+..+ +.+++++|++.| ++++.+|. .|+||||+|+..|+.+++++|+ ++|+|++.+|.+|
T Consensus       131 ~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g  208 (228)
T 2dzn_A          131 ASVRIKDKFNQIPLHRAASVG-SLKLIELLCGLGKSAVNWQDK-QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG  208 (228)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTT-CHHHHHHHHTTTCCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTS
T ss_pred             CCccccCCCCCCHHHHHHHcC-CHHHHHHHHhcCcccccCcCC-CCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCC
Confidence            999999999999999999988 899999999999 99999998 9999999999999999999999 9999999999999


Q ss_pred             CCHHHHHHhc
Q psy3899         714 LTPFMLLEEN  723 (923)
Q Consensus       714 ~tpl~~a~~~  723 (923)
                      +||+++|.+.
T Consensus       209 ~t~l~~A~~~  218 (228)
T 2dzn_A          209 AKAEDVALNE  218 (228)
T ss_dssp             CBGGGGCSST
T ss_pred             CcHHHHHHHH
Confidence            9999999764

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2e-35  Score=316.54  Aligned_cols=141  Identities=19%  Similarity=0.155  Sum_probs=122.5

Q ss_pred             cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhc
Q psy3899          29 QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF  108 (923)
Q Consensus        29 ~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~  108 (923)
                      ..+.+.|+.+|..+ +++.+|.+|+||||+|+..|+.++|++|+++|++++.+|  |.||||+|+..| +.+++++|+++
T Consensus         9 ~~~~~~v~~lL~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g-~~~~v~~Ll~~   84 (285)
T 3kea_A            9 TWKSKQLKSFLSSK-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLE-DTKIVKILLFS   84 (285)
T ss_dssp             GCCHHHHHHHHHST-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSS-SCHHHHHHHHT
T ss_pred             hcCHHHHHHHHHhC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcC-CHHHHHHHHHC
Confidence            34444444444444 688999999999999999999999999999999999885  899999999999 49999999999


Q ss_pred             CCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCC-CChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899         109 GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQG-LTPFMLLEENIGAPWLGKATVDKITE  179 (923)
Q Consensus       109 ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g-~t~L~~A~~~g~~~~~~~~~v~~L~~  179 (923)
                      |++++.+|. .|.||||+|+..|+.++|++|+++|++++.+|..| .||||+|+..|+.+     ++++|++
T Consensus        85 ga~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~-----~v~~Ll~  150 (285)
T 3kea_A           85 GLDDSQFDD-KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS-----IVSYFLS  150 (285)
T ss_dssp             TCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHH-----HHHHHHT
T ss_pred             CCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH-----HHHHHHh
Confidence            999999998 99999999999999999999999999999999888 79999999888777     6666654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=3e-36  Score=329.72  Aligned_cols=166  Identities=14%  Similarity=0.109  Sum_probs=142.1

Q ss_pred             CccccccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCcc-----------------CCCCChHHHHHHHhC
Q psy3899           1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM-----------------DSEGSTCIHQAAQFG   63 (923)
Q Consensus         1 v~~Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~-----------------d~~g~TpLh~Aa~~g   63 (923)
                      |++|+++|++++..+.. |.|+++     |+.++|+.||++|++++..                 .....+.+|+|+..+
T Consensus        35 v~~ll~~ga~i~~~~~~-g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~  108 (327)
T 1sw6_A           35 TSDFLSSPLKIMKALPS-PVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSL  108 (327)
T ss_dssp             CCSTTTSSCCCEECBCC-CCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHH
T ss_pred             HHHHhhCCcccccCCCC-CCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhh
Confidence            68999999999999876 999988     9999999999999887761                 112223468999999


Q ss_pred             cHHHHHHHHHCCCcccc-cCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCc---HHHHHHH
Q psy3899          64 HTRIVAYLVAKGINVNL-QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN---HVAITTL  139 (923)
Q Consensus        64 ~~~iv~~Ll~~ga~vn~-~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~---~~iv~~L  139 (923)
                      ..+++++|++.|+++|. +|.+|+||||+||..|+ .++|++|+++|++++.+|. .|.||||+|+..|+   .++++.|
T Consensus       109 ~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~-~~~v~~Ll~~Gad~n~~d~-~g~TpLh~A~~~g~~~~~~~~~~l  186 (327)
T 1sw6_A          109 LQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIAN-LELVKHLVKHGSNRLYGDN-MGESCLVKAVKSVNNYDSGTFEAL  186 (327)
T ss_dssp             HHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTC-HHHHHHHHHTTCCTTBCCT-TCCCHHHHHHHSSHHHHTTCHHHH
T ss_pred             HHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCC-HHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHhcccccHHHHHHH
Confidence            99999999999999999 89999999999999995 9999999999999999999 99999999999998   7889999


Q ss_pred             HhcC-CCCCCCCCCCCChHHHHHh----hcCCCCCchhhhhHHHH
Q psy3899         140 VSHT-SSLEIPNAQGLTPFMLLEE----NIGAPWLGKATVDKITE  179 (923)
Q Consensus       140 l~~g-a~~~~~~~~g~t~L~~A~~----~g~~~~~~~~~v~~L~~  179 (923)
                      ++.+ ++++.+|..|.||||+|+.    .|+.+     ++++|++
T Consensus       187 l~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~-----~v~~Ll~  226 (327)
T 1sw6_A          187 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSA-----AAKYYLD  226 (327)
T ss_dssp             HHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHH-----HHHHHHH
T ss_pred             HHhhhccccCCCCCCCCHHHHHHHHccccccHH-----HHHHHHH
Confidence            9887 7899999999999999999    67777     7887776

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=9.5e-36  Score=319.05  Aligned_cols=157  Identities=19%  Similarity=0.194  Sum_probs=140.8

Q ss_pred             cccccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccC
Q psy3899           3 YFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD   82 (923)
Q Consensus         3 ~Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d   82 (923)
                      +|.+.  ++|.+|.. |.||||+||..|+.++|++|+++|++++.+|  |+||||+|+..|+.+++++|+++|++++.+|
T Consensus        18 lL~~~--~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d   92 (285)
T 3kea_A           18 FLSSK--DTFKADVH-GHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFD   92 (285)
T ss_dssp             HHHST--TTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCC
T ss_pred             HHHhC--CCCccCCC-CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            45544  68888776 9999999999999999999999999999884  9999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCC-CcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHH
Q psy3899          83 RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG-NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLE  161 (923)
Q Consensus        83 ~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g-~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~  161 (923)
                      ..|.||||+|+..| +.+++++|+++|++++.+|. .| .||||+|+..|+.+++++|+++|++.... ..|.||||+|+
T Consensus        93 ~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~~~~~-~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~  169 (285)
T 3kea_A           93 DKGNTALYYAVDSG-NMQTVKLFVKKNWRLMFYGK-TGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITI  169 (285)
T ss_dssp             TTSCCHHHHHHHTT-CHHHHHHHHHHCGGGGGCSS-SGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHH
T ss_pred             CCCCcHHHHHHHcC-CHHHHHHHHhcCCCCCccCC-CCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHH
Confidence            99999999999999 49999999999999999998 88 89999999999999999999999865222 26777777777


Q ss_pred             hhcCCC
Q psy3899         162 ENIGAP  167 (923)
Q Consensus       162 ~~g~~~  167 (923)
                      ..|+.+
T Consensus       170 ~~g~~~  175 (285)
T 3kea_A          170 KNGHVD  175 (285)
T ss_dssp             HTTCHH
T ss_pred             HcChHH
Confidence            666555

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.7e-34  Score=297.02  Aligned_cols=210  Identities=26%  Similarity=0.323  Sum_probs=197.2

Q ss_pred             CCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcC-CCCCCCCCCCcHhHHHHHcCcH
Q psy3899         480 QFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQ-DVNEPDSETVTLLHWAAINNRI  558 (923)
Q Consensus       480 ~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~~g~t~Lh~A~~~g~~  558 (923)
                      .+.+||+.|+..+.                               .+.++.+++.+. .++..|..|.||||+|+..|+.
T Consensus         5 ~~~~~l~~A~~~g~-------------------------------~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~   53 (231)
T 3aji_A            5 VSNIMICNLAYSGK-------------------------------LDELKERILADKSLATRTDQDSRTALHWACSAGHT   53 (231)
T ss_dssp             CSSSHHHHHHHHTC-------------------------------HHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCH
T ss_pred             cccchHHHHHHhCC-------------------------------HHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcH
Confidence            35688998888775                               778888887654 5788899999999999999999


Q ss_pred             HHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCC
Q psy3899         559 EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV  638 (923)
Q Consensus       559 ~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~  638 (923)
                      +++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus        54 ~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  132 (231)
T 3aji_A           54 EIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP  132 (231)
T ss_dssp             HHHHHHHHTTCCSCCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHhCCCCCCcCCC-CCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999987655 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Q psy3899         639 NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFM  718 (923)
Q Consensus       639 ~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~  718 (923)
                      +..|..|.||||+|+..+ +.+++++|+++|++++.+|. .|+||||+|+..|+.+++++|+++|+|++.+|..|+||++
T Consensus       133 ~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  210 (231)
T 3aji_A          133 DAKDHYDATAMHRAAAKG-NLKMVHILLFYKASTNIQDT-EGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQ  210 (231)
T ss_dssp             TCCCTTSCCHHHHHHHHT-CHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred             CCcCCCCCcHHHHHHHcC-CHHHHHHHHhcCCCccccCC-CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            999999999999999998 99999999999999999998 9999999999999999999999999999999999999999


Q ss_pred             HHHhc
Q psy3899         719 LLEEN  723 (923)
Q Consensus       719 ~a~~~  723 (923)
                      +|.++
T Consensus       211 ~A~~~  215 (231)
T 3aji_A          211 VAKGG  215 (231)
T ss_dssp             HSCHH
T ss_pred             HHHhh
Confidence            99875

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.6e-33  Score=293.72  Aligned_cols=217  Identities=52%  Similarity=0.878  Sum_probs=205.7

Q ss_pred             CCCCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCc
Q psy3899         478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNR  557 (923)
Q Consensus       478 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~  557 (923)
                      +..+.|||+.|+..+.                               .+.++.|++.|++++.++..|.||||+|+..|+
T Consensus         6 d~~~~~~l~~A~~~g~-------------------------------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   54 (240)
T 3eu9_A            6 DDYSTWDIVKATQYGI-------------------------------YERCRELVEAGYDVRQPDKENVTLLHWAAINNR   54 (240)
T ss_dssp             SCGGGCCHHHHHHTTC-------------------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             ccccchHHHHHHHcCC-------------------------------hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCC
Confidence            4456789998887765                               789999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCC
Q psy3899         558 IEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN  637 (923)
Q Consensus       558 ~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  637 (923)
                      .+++++|+++|++++...+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus        55 ~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~  134 (240)
T 3eu9_A           55 IDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD  134 (240)
T ss_dssp             HHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC
Confidence            99999999999999987777799999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH
Q psy3899         638 VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPF  717 (923)
Q Consensus       638 ~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl  717 (923)
                      ++..|..|.||||+|+..+...+++++|++.|++++..+...|+||||+|+..|+.+++++|+++|++++.+|..|+||+
T Consensus       135 ~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l  214 (240)
T 3eu9_A          135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL  214 (240)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHH
T ss_pred             ccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            99999999999999998886799999999999999999876899999999999999999999999999999999999999


Q ss_pred             HHHHhccC
Q psy3899         718 MLLEENIG  725 (923)
Q Consensus       718 ~~a~~~~~  725 (923)
                      ++|++.+.
T Consensus       215 ~~A~~~~~  222 (240)
T 3eu9_A          215 DLAKQRKN  222 (240)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHcCc
Confidence            99999754

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.7e-33  Score=290.21  Aligned_cols=165  Identities=25%  Similarity=0.308  Sum_probs=151.5

Q ss_pred             CccccccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCC-ccc
Q psy3899           1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI-NVN   79 (923)
Q Consensus         1 v~~Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga-~vn   79 (923)
                      |++|+++|++++...+..|.||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++++ +++
T Consensus         7 i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~   86 (223)
T 2f8y_A            7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD   86 (223)
T ss_dssp             EETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTT
T ss_pred             HHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence            5789999999998755569999999999999999999999999999999999999999999999999999999987 899


Q ss_pred             ccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHH
Q psy3899          80 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML  159 (923)
Q Consensus        80 ~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~  159 (923)
                      ..+..|.||||+|+..| +.+++++|+++|++++..|. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus        87 ~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  164 (223)
T 2f8y_A           87 ARMHDGTTPLILAARLA-VEGMLEDLINSHADVNAVDD-LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL  164 (223)
T ss_dssp             CCCTTCCCHHHHHHHHT-CHHHHHHHHHTTCCTTCBCT-TSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             cCCCCCCcHHHHHHHhC-cHHHHHHHHHcCCCCcCcCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHH
Confidence            99999999999999999 49999999999999999998 99999999999999999999999999999999999999998


Q ss_pred             HHhhcCCC
Q psy3899         160 LEENIGAP  167 (923)
Q Consensus       160 A~~~g~~~  167 (923)
                      |+..|+.+
T Consensus       165 A~~~~~~~  172 (223)
T 2f8y_A          165 AAREGSYE  172 (223)
T ss_dssp             HHHHTCHH
T ss_pred             HHHcCCHH
Confidence            88776555

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2.6e-35  Score=322.19  Aligned_cols=188  Identities=18%  Similarity=0.148  Sum_probs=161.8

Q ss_pred             hhhHHHHHHhcCCCCC-CCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCC---HHHHHHHHH
Q psy3899         525 LSDKYQFVEAGQDVNE-PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH---LDSVVLLIQ  600 (923)
Q Consensus       525 ~~~~~~ll~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~---~~~v~~Ll~  600 (923)
                      .+.++.+++.|+++|. +|..|.||||+|+..|+.+++++|+++|++++..+.. |+||||+|+..|+   .++++.|++
T Consensus       110 ~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~-g~TpLh~A~~~g~~~~~~~~~~ll~  188 (327)
T 1sw6_A          110 QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNM-GESCLVKAVKSVNNYDSGTFEALLD  188 (327)
T ss_dssp             HHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTT-CCCHHHHHHHSSHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHhcccccHHHHHHHHH
Confidence            3566677788999999 8999999999999999999999999999999977655 9999999999998   788888888


Q ss_pred             CC-CCCCCCCCCCChHHHHHHH----cCcHHHHHHHHHc--------------------CCCCCccCCCCCcHHHHHHHh
Q psy3899         601 HG-ADPTLMDSEGSTCIHQAAQ----FGHTRIVAYLVAK--------------------GINVNLQDRNGMTALMWSAYK  655 (923)
Q Consensus       601 ~g-~~~~~~d~~g~t~Lh~A~~----~~~~~~v~~Ll~~--------------------g~~~~~~d~~g~t~Lh~a~~~  655 (923)
                      .+ ++++.+|..|.||||+|++    .|+.+++++|++.                    |++++.+|..|.||||+|+. 
T Consensus       189 ~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~-  267 (327)
T 1sw6_A          189 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD-  267 (327)
T ss_dssp             HHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS-
T ss_pred             hhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH-
Confidence            76 7899999999999999999    8999999999987                    89999999999999999883 


Q ss_pred             hCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhc
Q psy3899         656 VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN  723 (923)
Q Consensus       656 ~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~  723 (923)
                            +++|++.  +++.+|. .|+||||+|+..|+.++|++|+++|+|++.+|.+|+||||+|+++
T Consensus       268 ------~~~Ll~~--~~n~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          268 ------LKWIIAN--MLNAQDS-NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             ------HHHHHHH--TTTCCCT-TSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC-
T ss_pred             ------HHHHHHh--CCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence                  7889888  6888998 999999999999999999999999999999999999999999875

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.2e-33  Score=292.36  Aligned_cols=148  Identities=20%  Similarity=0.223  Sum_probs=123.3

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCChHHHHHHHhCcHHHHHHHHHCC--Ccccc-cCCCCCcHHHHHH
Q psy3899          18 LQATPLHWATRQGHLDSVVLLIQHGADPTL-MDSEGSTCIHQAAQFGHTRIVAYLVAKG--INVNL-QDRNGMTALMWSA   93 (923)
Q Consensus        18 ~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~-~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g--a~vn~-~d~~g~TpL~~Aa   93 (923)
                      .|+||||+||..|+.++|+.|++.|+++.. +|.+|+||||+|+..|+.+++++|+++|  ++++. .|..|.||||+|+
T Consensus         1 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             --CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            378999999999999999999988877654 8889999999999999999999999998  55666 7788889999888


Q ss_pred             HhcCCCchhHHHHhcC--CCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCC
Q psy3899          94 YKVFSLDPTRLLITFG--ASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAP  167 (923)
Q Consensus        94 ~~g~~~~vv~lLl~~g--a~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~  167 (923)
                      ..| +.+++++|++.|  ++++..|. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus        81 ~~~-~~~~~~~Ll~~g~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  154 (228)
T 2dzn_A           81 SVG-NLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK  154 (228)
T ss_dssp             HHC-CHHHHHHHHSSSSCCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred             HcC-CHHHHHHHHhCCCCcccccCCc-CCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH
Confidence            888 488888888888  88888887 8888888888888888888888888888777777777777777666555

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=4.7e-34  Score=308.81  Aligned_cols=196  Identities=28%  Similarity=0.380  Sum_probs=184.1

Q ss_pred             hhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCC
Q psy3899         525 LSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD  604 (923)
Q Consensus       525 ~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~  604 (923)
                      .+.++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++
T Consensus        53 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~-g~tpL~~A~~~g~~~~v~~Ll~~g~~  131 (299)
T 1s70_B           53 TEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE-GWIPLHAAASCGYLDIAEYLISQGAH  131 (299)
T ss_dssp             HHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHhCCCC
Confidence            88999999999999999999999999999999999999999999999987655 99999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHcCcHHHHHHHHHc-CCCCC--------------------------ccCCCCCcHHHHHHHhhC
Q psy3899         605 PTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVN--------------------------LQDRNGMTALMWSAYKVF  657 (923)
Q Consensus       605 ~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~-g~~~~--------------------------~~d~~g~t~Lh~a~~~~~  657 (923)
                      ++.+|..|.||||+|+..++.++++.++.. |.+++                          ..+..|.||||+|+..| 
T Consensus       132 ~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g-  210 (299)
T 1s70_B          132 VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKG-  210 (299)
T ss_dssp             TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHT-
T ss_pred             CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCC-
Confidence            999999999999999999999999888764 55543                          35678999999999998 


Q ss_pred             CcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhc
Q psy3899         658 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN  723 (923)
Q Consensus       658 ~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~  723 (923)
                      +.+++++|++.|++++.+|. .|+||||+|+..|+.+++++|+++|+|++.+|..|+||+++|.+.
T Consensus       211 ~~~~v~~Ll~~g~d~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~  275 (299)
T 1s70_B          211 YTEVLKLLIQARYDVNIKDY-DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED  275 (299)
T ss_dssp             CHHHHHHHHTTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG
T ss_pred             cHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH
Confidence            89999999999999999998 999999999999999999999999999999999999999999753

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.8e-33  Score=287.67  Aligned_cols=198  Identities=23%  Similarity=0.271  Sum_probs=187.2

Q ss_pred             hhhHHHHHHhcCCCCCC-CCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCC
Q psy3899         525 LSDKYQFVEAGQDVNEP-DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA  603 (923)
Q Consensus       525 ~~~~~~ll~~~~~~~~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~  603 (923)
                      .+.++.|++.|.+++.. |..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++++
T Consensus         4 ~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~   82 (223)
T 2f8y_A            4 PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM-GRTPLHAAVSADAQGVFQILIRNRA   82 (223)
T ss_dssp             -CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHBTT
T ss_pred             HHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            56667788899998876 889999999999999999999999999999977554 9999999999999999999999987


Q ss_pred             -CCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCCh
Q psy3899         604 -DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNV  682 (923)
Q Consensus       604 -~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~T  682 (923)
                       +++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..+ +.+++++|++.|++++.+|. .|.|
T Consensus        83 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~-~g~t  160 (223)
T 2f8y_A           83 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN-NVDAAVVLLKNGANKDMQNN-REET  160 (223)
T ss_dssp             SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TCCC
T ss_pred             CCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCCCcCC-CCcC
Confidence             89999999999999999999999999999999999999999999999999988 89999999999999999998 9999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhccC
Q psy3899         683 ALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIG  725 (923)
Q Consensus       683 pLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~~~  725 (923)
                      |||+|+..|+.+++++|+++|++++.+|..|.||+++|++++.
T Consensus       161 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  203 (223)
T 2f8y_A          161 PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH  203 (223)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcc
Confidence            9999999999999999999999999999999999999998754

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.5e-32  Score=265.48  Aligned_cols=159  Identities=36%  Similarity=0.452  Sum_probs=148.9

Q ss_pred             cHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHH
Q psy3899         547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR  626 (923)
Q Consensus       547 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~  626 (923)
                      ++|+.||+.|+.++|+.|+++|++++..+.. |+||||+|+..++.+++++|+++|++++.+|..|.||||+|++.|+.+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~-g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSD-GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence            5799999999999999999999999987655 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCC
Q psy3899         627 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSL  706 (923)
Q Consensus       627 ~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~  706 (923)
                      ++++|+++|+++|.+|..|+||||+|+..| +.+++++|+++|++++.+|. .|+||||+|+.+|+.+++++|+++||++
T Consensus        85 ~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g-~~~~v~~Ll~~gad~~~~d~-~G~TpL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A           85 VVKLLISKGADVNAKDSDGRTPLHHAAENG-HKEVVKLLISKGADVNTSDS-DGRTPLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred             HHHHHHHCcCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCccccCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            999999999999999999999999999998 89999999999999999998 9999999999999999999999999988


Q ss_pred             CC
Q psy3899         707 EI  708 (923)
Q Consensus       707 ~~  708 (923)
                      +.
T Consensus       163 e~  164 (169)
T 4gpm_A          163 EH  164 (169)
T ss_dssp             --
T ss_pred             CC
Confidence            74

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.3e-32  Score=266.78  Aligned_cols=152  Identities=32%  Similarity=0.444  Sum_probs=149.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCc
Q psy3899          21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLD  100 (923)
Q Consensus        21 T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~  100 (923)
                      ++|+.||+.|+.++|+.||++|+++|.+|.+|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..| +.+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g-~~~   84 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG-HKE   84 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcC-CHH
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999999 499


Q ss_pred             hhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899         101 PTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  179 (923)
Q Consensus       101 vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~  179 (923)
                      ++++|+++|+++|.+|. .|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|++.|+.+     ++++|++
T Consensus        85 ~v~~Ll~~gadvn~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~-----iv~~Ll~  157 (169)
T 4gpm_A           85 VVKLLISKGADVNAKDS-DGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEE-----VVKLLEK  157 (169)
T ss_dssp             HHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH-----HHHHHHT
T ss_pred             HHHHHHHCcCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH-----HHHHHHH
Confidence            99999999999999999 9999999999999999999999999999999999999999999999999     9999998

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.98  E-value=8e-33  Score=287.94  Aligned_cols=216  Identities=25%  Similarity=0.198  Sum_probs=191.5

Q ss_pred             CCCCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCc
Q psy3899         478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNR  557 (923)
Q Consensus       478 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~  557 (923)
                      +..|.||||.|+..+..+.+..+..                           .....+++++.+|..|.||||+|+..|+
T Consensus         5 d~~g~t~L~~A~~~g~~~~v~~Ll~---------------------------~~~~~~~~~~~~~~~g~t~L~~A~~~~~   57 (236)
T 1ikn_D            5 TEDGDSFLHLAIIHEEKALTMEVIR---------------------------QVKGDLAFLNFQNNLQQTPLHLAVITNQ   57 (236)
T ss_dssp             --CCCCTTHHHHHTTCSSSSSCCCC--------------------------------CCCCCCCCTTCCCHHHHHHHTTC
T ss_pred             CCCCCchhHHHHHcCChhHHHHHHH---------------------------HhhccHHHhhccCCCCCCHHHHHHHcCC
Confidence            4568999999999998776665432                           1223456899999999999999999999


Q ss_pred             HHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCC------CCCCCCCCChHHHHHHHcCcHHHHHHH
Q psy3899         558 IEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD------PTLMDSEGSTCIHQAAQFGHTRIVAYL  631 (923)
Q Consensus       558 ~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~------~~~~d~~g~t~Lh~A~~~~~~~~v~~L  631 (923)
                      .+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++      ++..+..|.||||+|+..|+.+++++|
T Consensus        58 ~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  136 (236)
T 1ikn_D           58 PEIAEALLGAGCDPELRDFR-GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL  136 (236)
T ss_dssp             HHHHHCCCSCCCCSCCCCTT-CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999999987654 99999999999999999999999987      466788999999999999999999999


Q ss_pred             HHcCCCCCccCC-CCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCC--C
Q psy3899         632 VAKGINVNLQDR-NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE--I  708 (923)
Q Consensus       632 l~~g~~~~~~d~-~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~--~  708 (923)
                      +++|++++.+|. .|.||||+|+..+ +.+++++|+++|++++.+|. .|+||||+|+.+|+.+++++|+++|++..  .
T Consensus       137 l~~g~~~~~~~~~~g~tpL~~A~~~~-~~~~v~~Ll~~ga~~~~~~~-~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~  214 (236)
T 1ikn_D          137 VSLGADVNAQEPCNGRTALHLAVDLQ-NPDLVSLLLKCGADVNRVTY-QGYSPYQLTWGRPSTRIQQQLGQLTLENLQML  214 (236)
T ss_dssp             HHHTCCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHTTTCCSCCCCT-TCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSC
T ss_pred             HHcCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCcccC-CCCCHHHHHHccCchHHHHHHHHcchhhhhcC
Confidence            999999999998 9999999999988 89999999999999999998 99999999999999999999999999765  8


Q ss_pred             CCCCCCCHHHHHHhc
Q psy3899         709 PNAQGLTPFMLLEEN  723 (923)
Q Consensus       709 ~d~~g~tpl~~a~~~  723 (923)
                      ++.+|.||.+.+.+.
T Consensus       215 ~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          215 PESEDEESYDTESEF  229 (236)
T ss_dssp             CCCCTTTCCCCC---
T ss_pred             CccchHHHHhhhccc
Confidence            999999999887654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=5e-31  Score=273.57  Aligned_cols=180  Identities=29%  Similarity=0.334  Sum_probs=169.2

Q ss_pred             CCCcHhHHHHHcCcHHHHHHHHhC-CCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCC-----CCCCCCCChHHH
Q psy3899         544 ETVTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADP-----TLMDSEGSTCIH  617 (923)
Q Consensus       544 ~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~-----~~~d~~g~t~Lh  617 (923)
                      .|.||||+|+..|+.+++++|++. |++++..+.. |+||||+|+..|+.+++++|+++|+++     +..|..|.||||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAM-GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCC-CCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            589999999999999999999998 9999987654 999999999999999999999999987     777889999999


Q ss_pred             HHHHcCcHHHHHHHHHcCCCCCccCC-------------CCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHH
Q psy3899         618 QAAQFGHTRIVAYLVAKGINVNLQDR-------------NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL  684 (923)
Q Consensus       618 ~A~~~~~~~~v~~Ll~~g~~~~~~d~-------------~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpL  684 (923)
                      +|+..|+.+++++|+++|++++..+.             .|.||||+|+..| +.+++++|+++|++++.+|. .|+|||
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~d~-~g~t~L  158 (232)
T 2rfa_A           81 IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVG-SEEIVRLLIEHGADIRAQDS-LGNTVL  158 (232)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHT-CHHHHHHHHHTTCCTTCCCT-TSCCHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcC-CHHHHHHHHHCCCCCCCCCC-CCCCHH
Confidence            99999999999999999999998876             7999999999998 89999999999999999998 999999


Q ss_pred             HHHHHcCCHHHH----HHHHHCCCCC------CCCCCCCCCHHHHHHhccCC
Q psy3899         685 HWAIYAKNHVAI----TTLVSHTSSL------EIPNAQGLTPFMLLEENIGA  726 (923)
Q Consensus       685 h~A~~~~~~~~v----~~Ll~~gad~------~~~d~~g~tpl~~a~~~~~~  726 (923)
                      |+|+..|+.+++    ++|+++|++.      +.+|..|+|||++|+++++.
T Consensus       159 ~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~  210 (232)
T 2rfa_A          159 HILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI  210 (232)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCH
Confidence            999999999988    9999999988      58999999999999998653

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=9.7e-31  Score=264.83  Aligned_cols=180  Identities=24%  Similarity=0.268  Sum_probs=108.6

Q ss_pred             CCCCcHhHHHHHcCcHHHHHHHHhCCC-cccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q psy3899         543 SETVTLLHWAAINNRIEIMKYFISQGA-IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ  621 (923)
Q Consensus       543 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~  621 (923)
                      ..+.||||.|+..|+.+.++.|++.+. +++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDT-EGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA   81 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            345566666666666666666665554 4444433 25666666666666666666666666666666666666666666


Q ss_pred             cCcHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcC-CCCcccccCCCChHHHHHHHcCC-----HH
Q psy3899         622 FGHTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFG-ASTTIQDKIHGNVALHWAIYAKN-----HV  694 (923)
Q Consensus       622 ~~~~~~v~~Ll~-~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~g-a~~~~~d~~~g~TpLh~A~~~~~-----~~  694 (923)
                      .|+.+++++|++ .+.+++..|..|.||||+|+..+ +.+++++|++.| ++++.+|. .|+||||+|+..++     .+
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~~  159 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG-HIDNVKLLLEDGREDIDFQND-FGYTALIEAVGLREGNQLYQD  159 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTT-CHHHHHHHHHHCCCCTTCCCT-TSCCHHHHHHHSSCCSHHHHH
T ss_pred             cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCcCCCCC-CCCCHHHHHHHhccchhhHHH
Confidence            666666666663 35566666666666666666555 556666666665 56666665 56666666666655     56


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHhccC
Q psy3899         695 AITTLVSHTSSLEIPNAQGLTPFMLLEENIG  725 (923)
Q Consensus       695 ~v~~Ll~~gad~~~~d~~g~tpl~~a~~~~~  725 (923)
                      ++++|+++|+|++.+|..|.||+++|++++.
T Consensus       160 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  190 (201)
T 3hra_A          160 IVKLLMENGADQSIKDNSGRTAMDYANQKGY  190 (201)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Confidence            6666666666666666666666666665543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=8.4e-32  Score=283.98  Aligned_cols=198  Identities=18%  Similarity=0.078  Sum_probs=178.7

Q ss_pred             CCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCC----CCCCCCcHhHHHHHc-
Q psy3899         481 FISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNE----PDSETVTLLHWAAIN-  555 (923)
Q Consensus       481 ~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----~~~~g~t~Lh~A~~~-  555 (923)
                      |.||||.|+..+..+.+                           ...++.+++.|++++.    +|..|.||||+|+.. 
T Consensus         2 G~t~L~~A~~~g~~~~v---------------------------~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~   54 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEEL---------------------------TGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNL   54 (256)
T ss_dssp             CHHHHHHHHHHTCGGGG---------------------------TTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTC
T ss_pred             CccHHHHHHHcCCHHHH---------------------------HHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHcc
Confidence            57999999998876543                           2466778889999998    899999999999999 


Q ss_pred             --CcHHHHHHHHhCCCcccccC----------CCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC------------
Q psy3899         556 --NRIEIMKYFISQGAIVDAIG----------GDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE------------  611 (923)
Q Consensus       556 --g~~~~v~~Ll~~g~~~~~~~----------~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~------------  611 (923)
                        |+.+++++|++.|++++...          +..|.||||+|+..|+.+++++|+++|++++.+|..            
T Consensus        55 ~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  134 (256)
T 2etb_A           55 QDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFY  134 (256)
T ss_dssp             BTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCC
T ss_pred             ccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccccc
Confidence              99999999999998876432          245999999999999999999999999999999887            


Q ss_pred             -CChHHHHHHHcCcHHHHHHHHH---cCCCCCccCCCCCcHHHHHHHhh-CCcc-------hHHHHHhcCCCC-------
Q psy3899         612 -GSTCIHQAAQFGHTRIVAYLVA---KGINVNLQDRNGMTALMWSAYKV-FSLD-------PTRLLITFGAST-------  672 (923)
Q Consensus       612 -g~t~Lh~A~~~~~~~~v~~Ll~---~g~~~~~~d~~g~t~Lh~a~~~~-~~~~-------~~~~Ll~~ga~~-------  672 (923)
                       |.||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+..+ ++.+       ++++|+++|+++       
T Consensus       135 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~  214 (256)
T 2etb_A          135 FGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLE  214 (256)
T ss_dssp             SCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGG
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccc
Confidence             9999999999999999999999   99999999999999999999832 2666       999999999999       


Q ss_pred             cccccCCCChHHHHHHHcCCHHHHHHHHHCCCCC
Q psy3899         673 TIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSL  706 (923)
Q Consensus       673 ~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~  706 (923)
                      +.+|. .|+||||+|+..|+.+++++|+++|++.
T Consensus       215 ~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          215 EISNH-QGLTPLKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             GCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccCC-CCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            88898 9999999999999999999999998754

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=4.8e-30  Score=259.70  Aligned_cols=187  Identities=24%  Similarity=0.289  Sum_probs=174.0

Q ss_pred             hhcccCCCCChhhHHHHHHhcC-CCCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHH
Q psy3899         515 RYEVYTEPTSLSDKYQFVEAGQ-DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD  593 (923)
Q Consensus       515 ~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~  593 (923)
                      .+..++..++.+.++.++..+. +++..|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+
T Consensus         8 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~   86 (201)
T 3hra_A            8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI-SDSPYLYAGAQGRTE   86 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHH
T ss_pred             HHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCCHHHHHHHcCCHH
Confidence            4555566777999999998776 99999999999999999999999999999999999987655 999999999999999


Q ss_pred             HHHHHH-HCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHhhCC----cchHHHHHh
Q psy3899         594 SVVLLI-QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFS----LDPTRLLIT  667 (923)
Q Consensus       594 ~v~~Ll-~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~Lh~a~~~~~~----~~~~~~Ll~  667 (923)
                      ++++|+ ..+++++..|..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..+..    .+++++|++
T Consensus        87 ~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~  166 (201)
T 3hra_A           87 ILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME  166 (201)
T ss_dssp             HHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHH
T ss_pred             HHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHH
Confidence            999999 678899999999999999999999999999999998 99999999999999999988731    899999999


Q ss_pred             cCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCC
Q psy3899         668 FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT  703 (923)
Q Consensus       668 ~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~g  703 (923)
                      +|++++.+|. .|+||||+|+..|+.+++++|+++|
T Consensus       167 ~ga~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          167 NGADQSIKDN-SGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             TTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCCCCCccCC-CCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            9999999998 9999999999999999999999987

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=3.3e-31  Score=282.37  Aligned_cols=213  Identities=16%  Similarity=0.095  Sum_probs=173.4

Q ss_pred             CCCCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCC----CCCCCCCcHhHHHH
Q psy3899         478 QGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVN----EPDSETVTLLHWAA  553 (923)
Q Consensus       478 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~~g~t~Lh~A~  553 (923)
                      +..|.||||.|+..+..+.++                           ..++.+.+.+.+++    ..|..|.||||+|+
T Consensus        10 d~~g~t~L~~A~~~g~~~~v~---------------------------~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~   62 (273)
T 2pnn_A           10 RLYDRRSIFDAVAQSNCQELE---------------------------SLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM   62 (273)
T ss_dssp             -CCCHHHHHHHHHTTCSSTTT---------------------------THHHHHHHSCCCTTSGGGSCTTTCCCHHHHHH
T ss_pred             CcccchHHHHHHHcCCHHHHH---------------------------HHHHHHhhcccccCCcccccCcCCCCHHHHHH
Confidence            566889999999998865443                           23334445777776    45889999999999


Q ss_pred             Hc---CcHHHHHHHHhCCCcc-------ccc---CCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----------
Q psy3899         554 IN---NRIEIMKYFISQGAIV-------DAI---GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDS----------  610 (923)
Q Consensus       554 ~~---g~~~~v~~Ll~~g~~~-------~~~---~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~----------  610 (923)
                      ..   |+.+++++|+++|++.       +..   .+..|.||||+|+..|+.++|++|+++|++++.++.          
T Consensus        63 ~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~  142 (273)
T 2pnn_A           63 LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGR  142 (273)
T ss_dssp             HSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSS
T ss_pred             HHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccccccccc
Confidence            87   9999999999998763       221   234599999999999999999999999999999987          


Q ss_pred             ----CCChHHHHHHHcCcHHHHHHHHH---cCCCCCccCCCCCcHHHHHHHhhCC--------cchHHHHHhcCCCCcc-
Q psy3899         611 ----EGSTCIHQAAQFGHTRIVAYLVA---KGINVNLQDRNGMTALMWSAYKVFS--------LDPTRLLITFGASTTI-  674 (923)
Q Consensus       611 ----~g~t~Lh~A~~~~~~~~v~~Ll~---~g~~~~~~d~~g~t~Lh~a~~~~~~--------~~~~~~Ll~~ga~~~~-  674 (923)
                          .|.||||+|+..|+.+++++|++   .|++++.+|..|+||||+|+..+..        .+++++|+++|++++. 
T Consensus       143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~  222 (273)
T 2pnn_A          143 PGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPT  222 (273)
T ss_dssp             CCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccc
Confidence                79999999999999999999999   9999999999999999999988732        6899999999999974 


Q ss_pred             ------cccCCCChHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCCHHH
Q psy3899         675 ------QDKIHGNVALHWAIYAKNHVAITTLVSHTS-SLEIPNAQGLTPFM  718 (923)
Q Consensus       675 ------~d~~~g~TpLh~A~~~~~~~~v~~Ll~~ga-d~~~~d~~g~tpl~  718 (923)
                            +|. .|+||||+|+..|+.+++++|+++|+ |+......+.+|-+
T Consensus       223 ~~~~~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          223 LKLEEITNR-KGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             CCGGGCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred             cccccccCC-CCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence                  777 99999999999999999999999999 88888888777643

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=2.1e-31  Score=277.16  Aligned_cols=185  Identities=25%  Similarity=0.329  Sum_probs=166.9

Q ss_pred             CCCCCCCCcHhHHHHHcCcHHHHHHHHhCCC----cccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCh
Q psy3899         539 NEPDSETVTLLHWAAINNRIEIMKYFISQGA----IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST  614 (923)
Q Consensus       539 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~----~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t  614 (923)
                      +.+|.+|.||||+|+..|+.+++++|++.+.    +++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t   80 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-LQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNT   80 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCT-TCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCC
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence            3568899999999999999999999998765    5676554 4999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCC------CCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHH
Q psy3899         615 CIHQAAQFGHTRIVAYLVAKGIN------VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI  688 (923)
Q Consensus       615 ~Lh~A~~~~~~~~v~~Ll~~g~~------~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~  688 (923)
                      |||+|+..|+.+++++|++.|.+      ++..|..|.||||+|+..+ +.+++++|+++|++++.++...|+||||+|+
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~  159 (236)
T 1ikn_D           81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG-YLGIVELLVSLGADVNAQEPCNGRTALHLAV  159 (236)
T ss_dssp             HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTT-CHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH
Confidence            99999999999999999999876      5778899999999999998 8999999999999999998658999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhccC
Q psy3899         689 YAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIG  725 (923)
Q Consensus       689 ~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~~~  725 (923)
                      ..|+.+++++|+++|++++.+|..|.||+++|+.++.
T Consensus       160 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~  196 (236)
T 1ikn_D          160 DLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS  196 (236)
T ss_dssp             HTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSC
T ss_pred             HcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCc
Confidence            9999999999999999999999999999999998754

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=4.2e-30  Score=258.08  Aligned_cols=162  Identities=23%  Similarity=0.213  Sum_probs=156.6

Q ss_pred             ccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHH
Q psy3899          10 IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL   89 (923)
Q Consensus        10 ~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL   89 (923)
                      .+|.+|.. |.||||+||..|+.++|++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus        27 ~~n~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L  105 (192)
T 2rfm_A           27 LRNYRDSY-NRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL  105 (192)
T ss_dssp             HHTCCCTT-CCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred             HHhCcCCC-CCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence            35677766 99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCC
Q psy3899          90 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWL  169 (923)
Q Consensus        90 ~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~  169 (923)
                      |+|+..| +.+++++|+++|++++.+|. .|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+  
T Consensus       106 ~~A~~~~-~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~--  181 (192)
T 2rfm_A          106 MWSIIFG-YSEMSYFLLEHGANVNDRNL-EGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQE--  181 (192)
T ss_dssp             HHHHHHT-CHHHHHHHHHTTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH--
T ss_pred             HHHHHcC-CHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHH--
Confidence            9999999 59999999999999999998 9999999999999999999999999999999999999999999999999  


Q ss_pred             chhhhhHHHH
Q psy3899         170 GKATVDKITE  179 (923)
Q Consensus       170 ~~~~v~~L~~  179 (923)
                         ++++|++
T Consensus       182 ---~v~~Ll~  188 (192)
T 2rfm_A          182 ---VIKIFTE  188 (192)
T ss_dssp             ---HHHHHHH
T ss_pred             ---HHHHHHh
Confidence               9999987

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=2e-30  Score=273.38  Aligned_cols=181  Identities=24%  Similarity=0.230  Sum_probs=166.1

Q ss_pred             CCCcHhHHHHHcCcHH----HHHHHHhCCCcccc---cCCCCCchHHHHHHHc---CCHHHHHHHHHCCCCCCCC-----
Q psy3899         544 ETVTLLHWAAINNRIE----IMKYFISQGAIVDA---IGGDLQATPLHWATRQ---GHLDSVVLLIQHGADPTLM-----  608 (923)
Q Consensus       544 ~g~t~Lh~A~~~g~~~----~v~~Ll~~g~~~~~---~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~-----  608 (923)
                      .|.||||+|+..|+.+    ++++|++.|++++.   ..+..|.||||+|+..   |+.+++++|+++|++++..     
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            4789999999999997    66777789999997   2345599999999999   9999999999999887743     


Q ss_pred             ------CCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCC-------------CCcHHHHHHHhhCCcchHHHHHh--
Q psy3899         609 ------DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-------------GMTALMWSAYKVFSLDPTRLLIT--  667 (923)
Q Consensus       609 ------d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~-------------g~t~Lh~a~~~~~~~~~~~~Ll~--  667 (923)
                            |..|.||||+|+..|+.+++++|+++|++++..|..             |.||||+|+..| +.+++++|++  
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~-~~~~v~~Ll~~~  159 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK-QWDVVTYLLENP  159 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTT-CHHHHHHHHHCS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcC-CHHHHHHHHhcc
Confidence                  478999999999999999999999999999999987             999999999988 8999999999  


Q ss_pred             -cCCCCcccccCCCChHHHHHHH--cCCHH-------HHHHHHHCCCCC-------CCCCCCCCCHHHHHHhccCC
Q psy3899         668 -FGASTTIQDKIHGNVALHWAIY--AKNHV-------AITTLVSHTSSL-------EIPNAQGLTPFMLLEENIGA  726 (923)
Q Consensus       668 -~ga~~~~~d~~~g~TpLh~A~~--~~~~~-------~v~~Ll~~gad~-------~~~d~~g~tpl~~a~~~~~~  726 (923)
                       .|++++.+|. .|+||||+|+.  .++.+       ++++|+++|+++       +.+|..|+||||+|++.+..
T Consensus       160 ~~ga~~n~~d~-~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~  234 (256)
T 2etb_A          160 HQPASLEATDS-LGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKI  234 (256)
T ss_dssp             SCCCCTTCCCT-TSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             ccCCCcCccCC-CCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCH
Confidence             9999999998 99999999999  88888       999999999999       99999999999999998653

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=2.3e-29  Score=246.44  Aligned_cols=154  Identities=19%  Similarity=0.223  Sum_probs=151.3

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCC
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS   98 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~   98 (923)
                      |.||||.||..|+.++|+.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| +
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~   81 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG-Y   81 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT-C
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC-C
Confidence            889999999999999999999999999999999999999999999999999999999999999999999999999999 4


Q ss_pred             CchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHH
Q psy3899          99 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKIT  178 (923)
Q Consensus        99 ~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~  178 (923)
                      .+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+     ++++|+
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~-----~~~~L~  155 (167)
T 3v31_A           82 TDIVKMLLDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRS-----VQQVIE  155 (167)
T ss_dssp             HHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH-----HHHHHH
T ss_pred             HHHHHHHHHCCCCCCcCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHH-----HHHHHH
Confidence            9999999999999999998 9999999999999999999999999999999999999999999999999     999998


Q ss_pred             H
Q psy3899         179 E  179 (923)
Q Consensus       179 ~  179 (923)
                      +
T Consensus       156 ~  156 (167)
T 3v31_A          156 S  156 (167)
T ss_dssp             H
T ss_pred             H
Confidence            8

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.6e-29  Score=248.93  Aligned_cols=170  Identities=23%  Similarity=0.349  Sum_probs=154.4

Q ss_pred             CCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCc
Q psy3899         545 TVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH  624 (923)
Q Consensus       545 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~  624 (923)
                      +.||||.|+..|+.++++.|++.+.+.....+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            56899999999999999999999988444445569999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCC
Q psy3899         625 TRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS  704 (923)
Q Consensus       625 ~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~ga  704 (923)
                      .+++++|+++|++++.+|..|.||||+|+..+ +.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|+
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (172)
T 3v30_A           82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGN-HVKCVEALLARGADLTTEAD-SGYTPMDLAVALGYRKVQQVIENHIL  159 (172)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCccccCC-CCCCHHHHHHHhCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999988 99999999999999999998 99999999999999999999999999


Q ss_pred             CCCCCCCCCCCH
Q psy3899         705 SLEIPNAQGLTP  716 (923)
Q Consensus       705 d~~~~d~~g~tp  716 (923)
                      ++..++..|.||
T Consensus       160 ~~~~~~~~~~~p  171 (172)
T 3v30_A          160 KLFQSNLVPADP  171 (172)
T ss_dssp             HHSCC-------
T ss_pred             HHhcccCCCCCC
Confidence            999999999998

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=4.2e-30  Score=273.75  Aligned_cols=189  Identities=20%  Similarity=0.219  Sum_probs=164.2

Q ss_pred             cCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHh----CCCcccc---cCCCCCchHHHHHHHc---CCHHHHHHHHHCCCC
Q psy3899         535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFIS----QGAIVDA---IGGDLQATPLHWATRQ---GHLDSVVLLIQHGAD  604 (923)
Q Consensus       535 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~----~g~~~~~---~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~  604 (923)
                      ++..+..|..|.||||+|+..|+.++++.|++    .+++++.   ..+..|+||||+|+..   |+.++|++|+++|++
T Consensus         3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~   82 (273)
T 2pnn_A            3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK   82 (273)
T ss_dssp             --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred             cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence            45667789999999999999999999998886    5665542   3355699999999987   999999999999875


Q ss_pred             C-------C----CCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCC--------------CCCcHHHHHHHhhCCc
Q psy3899         605 P-------T----LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDR--------------NGMTALMWSAYKVFSL  659 (923)
Q Consensus       605 ~-------~----~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~--------------~g~t~Lh~a~~~~~~~  659 (923)
                      +       +    ..|..|.||||+|++.|+.+++++|+++|++++..|.              .|.||||+|+..| +.
T Consensus        83 ~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g-~~  161 (273)
T 2pnn_A           83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN-QL  161 (273)
T ss_dssp             TTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTT-CH
T ss_pred             ccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcC-CH
Confidence            3       2    2567899999999999999999999999999999997              7999999999998 99


Q ss_pred             chHHHHHh---cCCCCcccccCCCChHHHHHHHcCC---------HHHHHHHHHCCCCCC-------CCCCCCCCHHHHH
Q psy3899         660 DPTRLLIT---FGASTTIQDKIHGNVALHWAIYAKN---------HVAITTLVSHTSSLE-------IPNAQGLTPFMLL  720 (923)
Q Consensus       660 ~~~~~Ll~---~ga~~~~~d~~~g~TpLh~A~~~~~---------~~~v~~Ll~~gad~~-------~~d~~g~tpl~~a  720 (923)
                      +++++|++   .|++++.+|. .|+||||+|+..|+         .+++++|+++|++++       .+|..|.|||++|
T Consensus       162 ~~v~~Ll~~~~~gad~~~~d~-~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A  240 (273)
T 2pnn_A          162 AIVKFLLQNSWQPADISARDS-VGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA  240 (273)
T ss_dssp             HHHHHHHHCSSCCCCTTCCCT-TSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred             HHHHHHHhcccCCCCceeeCC-CCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHH
Confidence            99999999   9999999998 99999999999998         899999999999987       5999999999999


Q ss_pred             HhccC
Q psy3899         721 EENIG  725 (923)
Q Consensus       721 ~~~~~  725 (923)
                      ++.++
T Consensus       241 ~~~g~  245 (273)
T 2pnn_A          241 ASSGK  245 (273)
T ss_dssp             HHTTC
T ss_pred             HHhCh
Confidence            99865

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=6.7e-30  Score=270.10  Aligned_cols=200  Identities=18%  Similarity=0.054  Sum_probs=174.0

Q ss_pred             CCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCC----CCCCcHhHHHH--
Q psy3899         480 QFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPD----SETVTLLHWAA--  553 (923)
Q Consensus       480 ~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~----~~g~t~Lh~A~--  553 (923)
                      .++|+|+.|+..+..+.++                           ..++.+++.|.+++..+    ..|.||||+|+  
T Consensus         4 ~~~~~L~~A~~~g~~~~v~---------------------------~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~   56 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLE---------------------------GLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLN   56 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGT---------------------------THHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTS
T ss_pred             chHHHHHHHHHhCCHHHHH---------------------------HHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHH
Confidence            4678999999888755332                           34556667999999766    77999999999  


Q ss_pred             -HcCcHHHHHHHHhCCCcccc----------cCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCC-------------
Q psy3899         554 -INNRIEIMKYFISQGAIVDA----------IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMD-------------  609 (923)
Q Consensus       554 -~~g~~~~v~~Ll~~g~~~~~----------~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d-------------  609 (923)
                       ..|+.+++++|++.|++...          ..+..|+||||+|+..|+.++|++|+++|++++.++             
T Consensus        57 ~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~  136 (260)
T 3jxi_A           57 LSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGY  136 (260)
T ss_dssp             CBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCS
T ss_pred             hhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCccccccc
Confidence             67999999999998865321          112259999999999999999999999999999998             


Q ss_pred             -CCCChHHHHHHHcCcHHHHHHHHH---cCCCCCccCCCCCcHHHHHHHhhCC--------cchHHHHHhcCCCC-----
Q psy3899         610 -SEGSTCIHQAAQFGHTRIVAYLVA---KGINVNLQDRNGMTALMWSAYKVFS--------LDPTRLLITFGAST-----  672 (923)
Q Consensus       610 -~~g~t~Lh~A~~~~~~~~v~~Ll~---~g~~~~~~d~~g~t~Lh~a~~~~~~--------~~~~~~Ll~~ga~~-----  672 (923)
                       ..|.||||+|+..|+.+++++|++   .|++++.+|..|+||||+|+..+..        .+++++|+++|+++     
T Consensus       137 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~  216 (260)
T 3jxi_A          137 FYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN  216 (260)
T ss_dssp             CCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccc
Confidence             689999999999999999999999   9999999999999999999987732        58999999999999     


Q ss_pred             --cccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy3899         673 --TIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE  707 (923)
Q Consensus       673 --~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~  707 (923)
                        +.+|. .|+||||+|+..|+.+++++|+++|++..
T Consensus       217 ~~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          217 LEALLNN-DGLSPLMMAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             GGGCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hhhcccC-CCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence              67887 99999999999999999999999987543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=3.8e-29  Score=245.39  Aligned_cols=155  Identities=28%  Similarity=0.343  Sum_probs=151.1

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcC
Q psy3899          18 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF   97 (923)
Q Consensus        18 ~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~   97 (923)
                      .+.|+|+.||+.|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| 
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-   91 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG-   91 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-
T ss_pred             cccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC-
Confidence            3789999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHH
Q psy3899          98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI  177 (923)
Q Consensus        98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L  177 (923)
                      +.+++++|+++|++++.+|. .|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+     ++++|
T Consensus        92 ~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~-----~~~~L  165 (169)
T 2y1l_E           92 HLEIVEVLLKNGADVNANDM-EGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED-----LAEIL  165 (169)
T ss_dssp             CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH-----HHHHH
T ss_pred             CHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHH-----HHHHH
Confidence            59999999999999999998 9999999999999999999999999999999999999999999999999     99999


Q ss_pred             HH
Q psy3899         178 TE  179 (923)
Q Consensus       178 ~~  179 (923)
                      ++
T Consensus       166 ~~  167 (169)
T 2y1l_E          166 QK  167 (169)
T ss_dssp             HT
T ss_pred             HH
Confidence            86

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=5.6e-29  Score=249.87  Aligned_cols=163  Identities=21%  Similarity=0.219  Sum_probs=156.8

Q ss_pred             CCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHH
Q psy3899         538 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIH  617 (923)
Q Consensus       538 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh  617 (923)
                      +|.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  106 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIE-GSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM  106 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccccccccc-CccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence            5788999999999999999999999999999999876555 999999999999999999999999999999999999999


Q ss_pred             HHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHH
Q psy3899         618 QAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT  697 (923)
Q Consensus       618 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~  697 (923)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..+ +.+++++|+++|++++.+|. .|.||||+|+..|+.++++
T Consensus       107 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~~v~  184 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG-RSEIVKKLLELGADISARDL-TGLTAEASARIFGRQEVIK  184 (192)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHT-CHHHHHHHHHTTCCTTCBCT-TSCBHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhCcHHHHH
Confidence            999999999999999999999999999999999999988 89999999999999999998 9999999999999999999


Q ss_pred             HHHHCC
Q psy3899         698 TLVSHT  703 (923)
Q Consensus       698 ~Ll~~g  703 (923)
                      +|+++|
T Consensus       185 ~Ll~~~  190 (192)
T 2rfm_A          185 IFTEVR  190 (192)
T ss_dssp             HHHHHH
T ss_pred             HHHhcc
Confidence            999875

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=9.5e-29  Score=238.20  Aligned_cols=151  Identities=24%  Similarity=0.302  Sum_probs=146.0

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCC
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS   98 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~   98 (923)
                      +.||||.|+..|+.++|+.|++.|++++ .|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| +
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~   79 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG-H   79 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT-C
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-h
Confidence            4699999999999999999999999887 5899999999999999999999999999999999999999999999999 5


Q ss_pred             CchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHH
Q psy3899          99 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI  177 (923)
Q Consensus        99 ~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L  177 (923)
                      .+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+     ++++|
T Consensus        80 ~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~-----i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAKDM-LKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNED-----LAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH-----HHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH-----HHHHh
Confidence            9999999999999999998 9999999999999999999999999999999999999999999999999     88876

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=3e-29  Score=267.01  Aligned_cols=169  Identities=18%  Similarity=0.207  Sum_probs=160.5

Q ss_pred             cccccCcc--cccccCCCCccHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCChHHHHHH-----HhCcHHHHHHHHHC
Q psy3899           3 YFISQGAI--VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA-DPTLMDSEGSTCIHQAA-----QFGHTRIVAYLVAK   74 (923)
Q Consensus         3 ~Li~~g~~--~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga-~~~~~d~~g~TpLh~Aa-----~~g~~~iv~~Ll~~   74 (923)
                      .+++.+.+  +|.+|.. |.||||+||..|+.++|++|++.|+ +++.+|..|+||||+|+     ..|+.+++++|++.
T Consensus        94 ~l~~~~~~~~~n~~d~~-g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~  172 (276)
T 4hbd_A           94 AMSARLLDYVVNIADSN-GNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRL  172 (276)
T ss_dssp             HHCHHHHHHHHTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCcCCCCC-CCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHc
Confidence            45555555  8888877 9999999999999999999999998 99999999999999999     77999999999999


Q ss_pred             CCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHh-cCCCCCCCCCCC
Q psy3899          75 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVS-HTSSLEIPNAQG  153 (923)
Q Consensus        75 ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~g  153 (923)
                      |++.+..|..|.||||+|+..| +.+++++|++.|++++.+|. .|.||||+|+..|+.++|++|++ .|++++.+|..|
T Consensus       173 g~~~~~~~~~g~tpLh~A~~~g-~~~~v~~Ll~~gad~n~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g  250 (276)
T 4hbd_A          173 GNINAKASQAGQTALMLAVSHG-RVDVVKALLACEADVNVQDD-DGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDG  250 (276)
T ss_dssp             SCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTS
T ss_pred             CCCccccCCCCCCHHHHHHHcC-CHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCC
Confidence            9999999999999999999999 59999999999999999999 99999999999999999999999 899999999999


Q ss_pred             CChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899         154 LTPFMLLEENIGAPWLGKATVDKITE  179 (923)
Q Consensus       154 ~t~L~~A~~~g~~~~~~~~~v~~L~~  179 (923)
                      .||||+|+..|+.+     ++++|++
T Consensus       251 ~TpL~~A~~~g~~~-----iv~~Ll~  271 (276)
T 4hbd_A          251 STALMVALDAGQSE-----IASMLYS  271 (276)
T ss_dssp             CCHHHHHHHHTCHH-----HHHHHHH
T ss_pred             CCHHHHHHHcCCHH-----HHHHHHh
Confidence            99999999999999     9999987

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=1.6e-28  Score=239.18  Aligned_cols=158  Identities=23%  Similarity=0.265  Sum_probs=148.9

Q ss_pred             CCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q psy3899         544 ETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG  623 (923)
Q Consensus       544 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~  623 (923)
                      ...||||.|+..|+.+++++|+++|++++..+.. |.||||+|+. |+.+++++|+++|++++.+|..|.||||+|++.|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGF-GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTT-SCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCcc-CccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            4679999999999999999999999999877555 9999999999 9999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCC-CcccccCCCChHHHHHHHcCCHHHHHHHHHC
Q psy3899         624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS-TTIQDKIHGNVALHWAIYAKNHVAITTLVSH  702 (923)
Q Consensus       624 ~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~-~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~  702 (923)
                      +.+++++|+++|++++.+|..|.||||+|+..+ +.+++++|++.|++ ++.+|. .|.||||+|+..|+.+++++|+++
T Consensus        82 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A           82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG-HLRVVEFLVKHTASNVGHRNH-KGDTACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHHSCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHHccCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999999999999999999988 89999999999998 588887 999999999999999999999999


Q ss_pred             CCC
Q psy3899         703 TSS  705 (923)
Q Consensus       703 gad  705 (923)
                      |||
T Consensus       160 GAd  162 (162)
T 1ihb_A          160 GAG  162 (162)
T ss_dssp             C--
T ss_pred             CCC
Confidence            986

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=9.1e-29  Score=240.85  Aligned_cols=153  Identities=26%  Similarity=0.329  Sum_probs=149.1

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCC
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS   98 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~   98 (923)
                      ..||||.|+..|+.++|+.|+++|++++.+|..|+||||+|+. |+.+++++|+++|++++.+|..|.||||+|+..| +
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~   82 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG-F   82 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT-C
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-C
Confidence            6799999999999999999999999999999999999999999 9999999999999999999999999999999999 4


Q ss_pred             CchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCC-CCCCCCCCCChHHHHHhhcCCCCCchhhhhHH
Q psy3899          99 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS-LEIPNAQGLTPFMLLEENIGAPWLGKATVDKI  177 (923)
Q Consensus        99 ~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L  177 (923)
                      .+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+     ++++|
T Consensus        83 ~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~-----~~~~L  156 (162)
T 1ihb_A           83 LDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE-----VVSLM  156 (162)
T ss_dssp             HHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH-----HHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHH-----HHHHH
Confidence            9999999999999999999 999999999999999999999999997 5999999999999999999999     99999


Q ss_pred             HH
Q psy3899         178 TE  179 (923)
Q Consensus       178 ~~  179 (923)
                      ++
T Consensus       157 l~  158 (162)
T 1ihb_A          157 QA  158 (162)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.4e-28  Score=242.26  Aligned_cols=156  Identities=21%  Similarity=0.246  Sum_probs=149.3

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcC
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGAD-PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF   97 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~-~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~   97 (923)
                      +.||||.||..|+.++|+.|++.|.+ ++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| 
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGG-   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT-
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCC-
Confidence            56999999999999999999999877 8899999999999999999999999999999999999999999999999999 


Q ss_pred             CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHH
Q psy3899          98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI  177 (923)
Q Consensus        98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L  177 (923)
                      +.+++++|+++|++++.+|. .|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+     ++++|
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~-----~~~~L  154 (172)
T 3v30_A           81 YTDIVGLLLERDVDINIYDW-NGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRK-----VQQVI  154 (172)
T ss_dssp             CHHHHHHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH-----HHHHH
T ss_pred             CHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHH-----HHHHH
Confidence            49999999999999999998 9999999999999999999999999999999999999999999999999     99999


Q ss_pred             HHHH
Q psy3899         178 TELK  181 (923)
Q Consensus       178 ~~~~  181 (923)
                      ++..
T Consensus       155 ~~~~  158 (172)
T 3v30_A          155 ENHI  158 (172)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9833

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=2.2e-28  Score=239.41  Aligned_cols=161  Identities=26%  Similarity=0.378  Sum_probs=150.4

Q ss_pred             CCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q psy3899         544 ETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG  623 (923)
Q Consensus       544 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~  623 (923)
                      .|.||||.|+..|+.+++++|++.|++++..+.. |.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEE-GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCC-CCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence            5889999999999999999999999998876554 999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCC
Q psy3899         624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT  703 (923)
Q Consensus       624 ~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~g  703 (923)
                      +.+++++|+++|++++..|..|.||||+|+..+ +.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|++++
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A           81 YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIETD-SGYNSMDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHHHH
Confidence            999999999999999999999999999999888 89999999999999999998 9999999999999999999999988


Q ss_pred             CCCC
Q psy3899         704 SSLE  707 (923)
Q Consensus       704 ad~~  707 (923)
                      ++..
T Consensus       159 ~~~~  162 (167)
T 3v31_A          159 LKLL  162 (167)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            7543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=5.4e-28  Score=237.14  Aligned_cols=159  Identities=33%  Similarity=0.401  Sum_probs=149.1

Q ss_pred             CCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q psy3899         542 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ  621 (923)
Q Consensus       542 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~  621 (923)
                      ...+.|+||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   89 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDAS-GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL   89 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            456789999999999999999999999999876554 9999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHH
Q psy3899         622 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVS  701 (923)
Q Consensus       622 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~  701 (923)
                      .|+.+++++|+++|++++..|..|.||||+|+..+ +.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|++
T Consensus        90 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E           90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG-HLEIVEVLLKNGADVNAQDK-FGKTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHhCCHHHHHHHHH
Confidence            99999999999999999999999999999999988 89999999999999999998 99999999999999999999998


Q ss_pred             CC
Q psy3899         702 HT  703 (923)
Q Consensus       702 ~g  703 (923)
                      .|
T Consensus       168 ~G  169 (169)
T 2y1l_E          168 LN  169 (169)
T ss_dssp             C-
T ss_pred             cC
Confidence            86

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=1.1e-28  Score=262.67  Aligned_cols=176  Identities=24%  Similarity=0.311  Sum_probs=158.2

Q ss_pred             hhhHHHHHHhcCC--CCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCC-cccccCCCCCchHHHHHH-----HcCCHHHHH
Q psy3899         525 LSDKYQFVEAGQD--VNEPDSETVTLLHWAAINNRIEIMKYFISQGA-IVDAIGGDLQATPLHWAT-----RQGHLDSVV  596 (923)
Q Consensus       525 ~~~~~~ll~~~~~--~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~t~Lh~A~-----~~g~~~~v~  596 (923)
                      .+.++.+++.+.+  +|.+|..|.||||+|+..|+.+++++|++.|+ +++..+ ..|.||||+|+     ..++.++++
T Consensus        89 ~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~g~tpL~~a~~~~~~~~~~~~~v~  167 (276)
T 4hbd_A           89 LVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQN-RAGYSPIMLTALATLKTQDDIETVL  167 (276)
T ss_dssp             HHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCC-TTSCCHHHHGGGCCCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCC-CCCCCHHHHHHHHHhhhhhhHHHHH
Confidence            4555566655544  78899999999999999999999999999998 777655 44999999999     678899999


Q ss_pred             HHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHh-cCCCCccc
Q psy3899         597 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT-FGASTTIQ  675 (923)
Q Consensus       597 ~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~-~ga~~~~~  675 (923)
                      +|++.|++++..|..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..| +.+++++|++ .|++++.+
T Consensus       168 ~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g-~~~iv~~Ll~~~gad~~~~  246 (276)
T 4hbd_A          168 QLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHG-HKEIAGLLLAVPSCDISLT  246 (276)
T ss_dssp             HHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT-CHHHHHHHHTSTTCCTTCC
T ss_pred             HHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCC-CHHHHHHHHhcCCCCCcCc
Confidence            999999999999999999999999999999999999999999999999999999999988 8999999999 89999999


Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHHHCC
Q psy3899         676 DKIHGNVALHWAIYAKNHVAITTLVSHT  703 (923)
Q Consensus       676 d~~~g~TpLh~A~~~~~~~~v~~Ll~~g  703 (923)
                      |. .|+||||+|+..|+.+++++|++++
T Consensus       247 d~-~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          247 DR-DGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             CT-TSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CC-CCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            98 9999999999999999999999875

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=6.2e-29  Score=262.62  Aligned_cols=183  Identities=20%  Similarity=0.172  Sum_probs=163.6

Q ss_pred             CCCCCcHhHHHHHcCcHHHHHH----HHhCCCcccccC---CCCCchHHHHHH---HcCCHHHHHHHHHCCCC-------
Q psy3899         542 DSETVTLLHWAAINNRIEIMKY----FISQGAIVDAIG---GDLQATPLHWAT---RQGHLDSVVLLIQHGAD-------  604 (923)
Q Consensus       542 ~~~g~t~Lh~A~~~g~~~~v~~----Ll~~g~~~~~~~---~~~g~t~Lh~A~---~~g~~~~v~~Ll~~g~~-------  604 (923)
                      +..|.|+||.|++.|+.+.++.    |++.|++++..+   +..|.||||+|+   +.|+.+++++|++.|++       
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            4578999999999999995554    445899988654   255999999999   77999999999998754       


Q ss_pred             ----CCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccC--------------CCCCcHHHHHHHhhCCcchHHHHH
Q psy3899         605 ----PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD--------------RNGMTALMWSAYKVFSLDPTRLLI  666 (923)
Q Consensus       605 ----~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d--------------~~g~t~Lh~a~~~~~~~~~~~~Ll  666 (923)
                          .+..|..|.||||+|+..|+.+++++|+++|++++..|              ..|.||||+|+..| +.+++++|+
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g-~~~~v~~Ll  160 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN-QPHIVHYLT  160 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTT-CHHHHHHHH
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcC-CHHHHHHHH
Confidence                34456689999999999999999999999999999999              68999999999998 899999999


Q ss_pred             h---cCCCCcccccCCCChHHHHHHHcCC---------HHHHHHHHHCCCCC-------CCCCCCCCCHHHHHHhccCC
Q psy3899         667 T---FGASTTIQDKIHGNVALHWAIYAKN---------HVAITTLVSHTSSL-------EIPNAQGLTPFMLLEENIGA  726 (923)
Q Consensus       667 ~---~ga~~~~~d~~~g~TpLh~A~~~~~---------~~~v~~Ll~~gad~-------~~~d~~g~tpl~~a~~~~~~  726 (923)
                      +   .|++++.+|. .|+||||+|+..++         .+++++|+++|+++       +.+|.+|.||||+|++.++.
T Consensus       161 ~~~~~ga~~~~~d~-~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~  238 (260)
T 3jxi_A          161 ENGHKQADLRRQDS-RGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI  238 (260)
T ss_dssp             HCSSCCCCTTCCCT-TSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             hccccCCCCcccCC-CCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCH
Confidence            9   9999999998 99999999999888         79999999999998       68999999999999998653

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=5.2e-28  Score=233.83  Aligned_cols=152  Identities=26%  Similarity=0.379  Sum_probs=147.1

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcC
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF   97 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~-ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~   97 (923)
                      |.||||.||..|+.++|+.|++. +.+++.+|..|+||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..| 
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG-   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC-
Confidence            67999999999999999999999 55999999999999999 9999999999999999999999999999999999999 


Q ss_pred             CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHH
Q psy3899          98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI  177 (923)
Q Consensus        98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L  177 (923)
                      +.+++++|+++|++++.+|. .|.||||+|+..|+.++|++|+++ ++++.+|..|.||||+|+..|+.+     ++++|
T Consensus        80 ~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~-----~v~~L  152 (156)
T 1bd8_A           80 FLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQD-----LVDIL  152 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHH-----HHHHH
T ss_pred             cHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHH-----HHHHH
Confidence            59999999999999999999 999999999999999999999999 999999999999999999999999     99998


Q ss_pred             HH
Q psy3899         178 TE  179 (923)
Q Consensus       178 ~~  179 (923)
                      ++
T Consensus       153 l~  154 (156)
T 1bd8_A          153 QG  154 (156)
T ss_dssp             HT
T ss_pred             Hh
Confidence            75

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=3.4e-28  Score=237.60  Aligned_cols=155  Identities=22%  Similarity=0.274  Sum_probs=147.8

Q ss_pred             CCCccHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHh
Q psy3899          17 DLQATPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK   95 (923)
Q Consensus        17 ~~g~T~Lh~Aa~~g~~~~V~~Ll~~-ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~   95 (923)
                      ..|.||||.|+..|+.++|+.|++. +.+++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus         6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   85 (165)
T 3twr_A            6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY   85 (165)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence            3489999999999999999999985 678888999999999999999999999999999999999999999999999999


Q ss_pred             cCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhh
Q psy3899          96 VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVD  175 (923)
Q Consensus        96 g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~  175 (923)
                      | +.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|.+ |+.+     +++
T Consensus        86 ~-~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~-----i~~  157 (165)
T 3twr_A           86 G-HYEVAELLVKHGAVVNVADL-WKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTD-----IQD  157 (165)
T ss_dssp             T-CHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHH-----HHH
T ss_pred             C-cHHHHHHHHhCCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChH-----HHH
Confidence            9 49999999999999999999 99999999999999999999999999999999999999999877 7778     999


Q ss_pred             HHHH
Q psy3899         176 KITE  179 (923)
Q Consensus       176 ~L~~  179 (923)
                      +|++
T Consensus       158 ~L~~  161 (165)
T 3twr_A          158 LLRG  161 (165)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            9986

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=1.1e-27  Score=237.53  Aligned_cols=168  Identities=21%  Similarity=0.262  Sum_probs=155.2

Q ss_pred             CCCCcHhHHHHHcCcHHHHHHHHhC-CCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q psy3899         543 SETVTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ  621 (923)
Q Consensus       543 ~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~  621 (923)
                      .++.++||.|+..|+.+++++|++. +.+++..+ ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGD-DHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccC-CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            4678999999999999999999998 55566554 459999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHH
Q psy3899         622 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVS  701 (923)
Q Consensus       622 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~  701 (923)
                      .|+.+++++|+++|++++..|..|.||||+|+..+ +.+++++|+++|++++.+|. .|.||||+|+..++.+++++|++
T Consensus        82 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~~~-~g~tpl~~A~~~~~~~~~~~L~~  159 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG-QDQVAEDLVANGALVSICNK-YGEMPVDKAKAPLRELLRERAEK  159 (179)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCSSBCCT-TSCCGGGGSCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC-CHHHHHHHHHCCCCcchhcc-CCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988 89999999999999999998 99999999999999999999999


Q ss_pred             CCCCCCCCCCCC
Q psy3899         702 HTSSLEIPNAQG  713 (923)
Q Consensus       702 ~gad~~~~d~~g  713 (923)
                      +|++++..+.++
T Consensus       160 ~g~~~~~~~~~~  171 (179)
T 3f6q_A          160 MGQNLNRIPYKD  171 (179)
T ss_dssp             TTCCCSCBCCCC
T ss_pred             hhcCcccCCccc
Confidence            999999877654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=4e-30  Score=265.26  Aligned_cols=200  Identities=18%  Similarity=0.091  Sum_probs=171.3

Q ss_pred             HHHHHHhcCCCCCCC---CCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCC
Q psy3899         528 KYQFVEAGQDVNEPD---SETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD  604 (923)
Q Consensus       528 ~~~ll~~~~~~~~~~---~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~  604 (923)
                      ++.++++|++++..+   ..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~-g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEE-GITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            356788888877654   45668899999999999999999999999986555 99999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccC-CCCCcHHHHH--HHhhCCcchHHHHHhcCCCCcccccCCCC
Q psy3899         605 PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWS--AYKVFSLDPTRLLITFGASTTIQDKIHGN  681 (923)
Q Consensus       605 ~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~t~Lh~a--~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~  681 (923)
                      ++.+|..|.||||+|+..|+.+++++|+++|++++..| ..|+||||+|  +..+ +.+++++|++.|++++.+|. .|.
T Consensus        80 ~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~-~~~~v~~Ll~~ga~~~~~~~-~~~  157 (229)
T 2vge_A           80 VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREG-YADCATYLADVEQSMGLMNS-GAV  157 (229)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTT-HHHHHHHHHHHHHHTTTSGG-GEE
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcC-hHHHHHHHHHcCCCcccccC-Cch
Confidence            99999999999999999999999999999999999997 5999999999  7777 89999999999999999998 899


Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHhccCCCccchhh
Q psy3899         682 VALHWAIYAKNHVAITTLVSHTSS--LEIPNAQGLTPFMLLEENIGAPWLGKAT  733 (923)
Q Consensus       682 TpLh~A~~~~~~~~v~~Ll~~gad--~~~~d~~g~tpl~~a~~~~~~~~~~~~~  733 (923)
                      ||||.++..+.   +++|++.|++  ++.+|.+|+|||++|+.++...++.+..
T Consensus       158 ~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          158 YALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             EESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             HHHHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            99997665543   3678999998  7889999999999999988776665543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=5.5e-30  Score=282.30  Aligned_cols=146  Identities=16%  Similarity=0.071  Sum_probs=123.5

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCChHHHHHHHhCcHHHHHHHHHCCCc---ccccCCCCCcHHHHH
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADP---TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN---VNLQDRNGMTALMWS   92 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~---~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~---vn~~d~~g~TpL~~A   92 (923)
                      ++||||+||+.|+.++|++|+++|++.   +..|.+|.||||+||..||.++|++|+++|++   .+..+.+ .||||+|
T Consensus        92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~A  170 (376)
T 2aja_A           92 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLA  170 (376)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHH
T ss_pred             cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHH
Confidence            569999999999999999999998732   23456788999999999999999999999976   3333333 8999999


Q ss_pred             HHhcCCCchhHHHHhcCCCccc--ccccCCCcHHHHHH-HhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCC
Q psy3899          93 AYKVFSLDPTRLLITFGASTTI--QDKIHGNVALHWAI-YAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWL  169 (923)
Q Consensus        93 a~~g~~~~vv~lLl~~ga~~~~--~d~~~g~T~L~~A~-~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~  169 (923)
                      |..|+ .++|++|+++|++++.  .|. .|.||||+|+ .+|+.++|++|+++|+       .|.||||.|+.+|+.+  
T Consensus       171 a~~G~-~eiv~~Ll~~ga~~~~~~~d~-~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~e--  239 (376)
T 2aja_A          171 AENGH-LHVLNRLCELAPTEATAMIQA-ENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKY--  239 (376)
T ss_dssp             HHTTC-HHHHHHHHHSCGGGHHHHHHH-HHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTT--
T ss_pred             HHCCC-HHHHHHHHHcCCccchhccCC-CCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHH--
Confidence            99995 9999999999999887  887 8999999999 9999999999999774       3889999999999999  


Q ss_pred             chhhhhHHHH
Q psy3899         170 GKATVDKITE  179 (923)
Q Consensus       170 ~~~~v~~L~~  179 (923)
                         ++++|++
T Consensus       240 ---vv~lL~~  246 (376)
T 2aja_A          240 ---VNPFIAR  246 (376)
T ss_dssp             ---HHHHHHH
T ss_pred             ---HHHHHHh
Confidence               9999987

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=5.6e-29  Score=256.65  Aligned_cols=170  Identities=21%  Similarity=0.151  Sum_probs=144.2

Q ss_pred             CccccccCcccccccC--CCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcc
Q psy3899           1 MKYFISQGAIVDAIGG--DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV   78 (923)
Q Consensus         1 v~~Li~~g~~~n~~~~--~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~v   78 (923)
                      |+.|+++|++++..+.  ..|.||||+||..|+.++|+.|++.|++++.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            6789999999876543  34678999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHH--HHhCcHHHHHHHHhcCCCCC---------
Q psy3899          79 NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA--IYAKNHVAITTLVSHTSSLE---------  147 (923)
Q Consensus        79 n~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A--~~~g~~~iv~~Ll~~ga~~~---------  147 (923)
                      |.+|..|.||||+|+..| +.+++++|++.|++++..++..|.||||+|  +..|+.+++++|+++|++++         
T Consensus        81 n~~d~~g~tpLh~A~~~g-~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~  159 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCN-DTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA  159 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTT-CHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEE
T ss_pred             CCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHH
Confidence            999999999999999999 599999999999999998733899999999  99999999999998765443         


Q ss_pred             -----------------------CCCCCCCChHHHHHhhcCCCCCchhhhhH
Q psy3899         148 -----------------------IPNAQGLTPFMLLEENIGAPWLGKATVDK  176 (923)
Q Consensus       148 -----------------------~~~~~g~t~L~~A~~~g~~~~~~~~~v~~  176 (923)
                                             .+|..|.||||+|+..|+.+     +|+.
T Consensus       160 l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~-----~v~~  206 (229)
T 2vge_A          160 LWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEG-----YVPR  206 (229)
T ss_dssp             SSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEE-----EEEG
T ss_pred             HHHHhhccccccCccccccccccccCCCcccHHHHHHHcCCcc-----eeeh
Confidence                                   34667888888888888888     6654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=9.6e-28  Score=237.84  Aligned_cols=154  Identities=22%  Similarity=0.303  Sum_probs=148.5

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcC
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF   97 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~-ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~   97 (923)
                      +.|+||.||..|+.++|+.|++. +.+++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   84 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH   84 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            78999999999999999999999 78899999999999999999999999999999999999999999999999999995


Q ss_pred             CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHH
Q psy3899          98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI  177 (923)
Q Consensus        98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L  177 (923)
                       .+++++|+++|++++.+|. .|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..++.+     ++++|
T Consensus        85 -~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~-----~~~~L  157 (179)
T 3f6q_A           85 -RDIVQKLLQYKADINAVNE-HGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLREL-----LRERA  157 (179)
T ss_dssp             -HHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHH-----HHHHH
T ss_pred             -HHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHH-----HHHHH
Confidence             9999999999999999998 9999999999999999999999999999999999999999999999988     99999


Q ss_pred             HH
Q psy3899         178 TE  179 (923)
Q Consensus       178 ~~  179 (923)
                      ++
T Consensus       158 ~~  159 (179)
T 3f6q_A          158 EK  159 (179)
T ss_dssp             HH
T ss_pred             HH
Confidence            88

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=3.9e-31  Score=291.47  Aligned_cols=139  Identities=14%  Similarity=0.038  Sum_probs=91.8

Q ss_pred             CccHHHHHHH-cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCc---ccccCCCCCcHHHHHHH
Q psy3899          19 QATPLHWATR-QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN---VNLQDRNGMTALMWSAY   94 (923)
Q Consensus        19 g~T~Lh~Aa~-~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~---vn~~d~~g~TpL~~Aa~   94 (923)
                      +.+++++|+. .++.++++.++++|++.       +||||+||+.|+.++|++|+++|+.   .+..|..|.||||+||.
T Consensus        65 ~ll~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~  137 (376)
T 2aja_A           65 QLLCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE  137 (376)
T ss_dssp             HHHHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHH
Confidence            4567777766 46677777777766443       4777777777777777777777762   22334456777777777


Q ss_pred             hcCCCchhHHHHhcCCCc---ccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCC--CCCCCCChHHHHH-hhcCCC
Q psy3899          95 KVFSLDPTRLLITFGAST---TIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEI--PNAQGLTPFMLLE-ENIGAP  167 (923)
Q Consensus        95 ~g~~~~vv~lLl~~ga~~---~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~--~~~~g~t~L~~A~-~~g~~~  167 (923)
                      .|+ .++|++|+++|+++   +..+. + .||||+|+.+|+.++|++|+++|++++.  .|..|.||||+|+ ..|+.+
T Consensus       138 ~G~-~eiv~~Ll~~gad~~~~~i~~~-~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~e  213 (376)
T 2aja_A          138 NGH-LHVLNRLCELAPTEIMAMIQAE-N-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN  213 (376)
T ss_dssp             TTC-HHHHHHHHHSCTTTHHHHHSHH-H-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred             cCC-HHHHHHHHhCCCCccccccCCC-C-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHH
Confidence            774 77777777777653   33333 3 7777777777777777777777776655  5666666666666 666665

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=2.7e-27  Score=227.94  Aligned_cols=151  Identities=28%  Similarity=0.360  Sum_probs=136.0

Q ss_pred             CCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCc
Q psy3899         545 TVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH  624 (923)
Q Consensus       545 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~  624 (923)
                      ..|+||.|+..|+.+++++|+++|++++.  +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCCC--CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence            45889999999999999999999987763  4558999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHH
Q psy3899         625 TRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL  699 (923)
Q Consensus       625 ~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~L  699 (923)
                      .+++++|+++|++++.+|..|.||||+|+..+ +.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|
T Consensus        80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHN-HQEVVELLIKYGADVHTQSK-FCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCccccCC-CCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999999999999999999999887 88999999999999999888 899999999999999999876

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=1.5e-27  Score=233.02  Aligned_cols=160  Identities=29%  Similarity=0.342  Sum_probs=145.1

Q ss_pred             CCCCCCcHhHHHHHcCcHHHHHHHHhCCC-cccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q psy3899         541 PDSETVTLLHWAAINNRIEIMKYFISQGA-IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA  619 (923)
Q Consensus       541 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A  619 (923)
                      .|.+|.||||.|+..|+.++++.|++.+. +++.. +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-ccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence            46778999999999999999999998544 44443 44489999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHH
Q psy3899         620 AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL  699 (923)
Q Consensus       620 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~L  699 (923)
                      +..|+.+++++|+++|++++..|..|.||||+|+..+ +.+++++|+++|++++.+|. .|.||||+|+. |+.+++++|
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~a~~-~~~~i~~~L  159 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG-KYEICKLLLQHGADPTKKNR-DGNTPLDLVKD-GDTDIQDLL  159 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCTGGGSCT-TCHHHHHHH
T ss_pred             HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCcccCC-CCCChhHhHhc-CChHHHHHH
Confidence            9999999999999999999999999999999999988 89999999999999999998 99999999876 999999999


Q ss_pred             HHCCC
Q psy3899         700 VSHTS  704 (923)
Q Consensus       700 l~~ga  704 (923)
                      +++|+
T Consensus       160 ~~~gA  164 (165)
T 3twr_A          160 RGDAA  164 (165)
T ss_dssp             HTC--
T ss_pred             hhccc
Confidence            99986

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=2.4e-28  Score=254.34  Aligned_cols=181  Identities=23%  Similarity=0.186  Sum_probs=136.7

Q ss_pred             CCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q psy3899         542 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ  621 (923)
Q Consensus       542 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~  621 (923)
                      +..|.||||.|+..|+.+.++.|+++|++++..  ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~--~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN--PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC   79 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcccC--chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            346999999999999999999999999999864  458999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHH--HHcCCHHHHHHH
Q psy3899         622 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA--IYAKNHVAITTL  699 (923)
Q Consensus       622 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A--~~~~~~~~v~~L  699 (923)
                      .|+.+++++|+++|++++.+|..|+||||+|+..+ +.+++++|+++|++++.++...++||||+|  +..|+.+++++|
T Consensus        80 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~-~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~L  158 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN-NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL  158 (239)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHH
Confidence            99999999999999999999999999999999888 899999999999999999983444999999  888999999999


Q ss_pred             HHCCCCCCCC---------CCCCCCHHHHHHhccC
Q psy3899         700 VSHTSSLEIP---------NAQGLTPFMLLEENIG  725 (923)
Q Consensus       700 l~~gad~~~~---------d~~g~tpl~~a~~~~~  725 (923)
                      +++|++++..         |..|++|.+++.+.+.
T Consensus       159 l~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          159 YGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            9999998876         6678899988877654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=1.4e-27  Score=224.85  Aligned_cols=134  Identities=22%  Similarity=0.263  Sum_probs=129.8

Q ss_pred             CcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCC-CC
Q psy3899           8 GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-GM   86 (923)
Q Consensus         8 g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~-g~   86 (923)
                      |+++|..+.. |.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+. |+.+++++|+++|++++.+|.. |.
T Consensus         2 ~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~   79 (136)
T 1d9s_A            2 SPGIHMLGGS-SDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLT   79 (136)
T ss_dssp             CCCCSCCCCC-CSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTB
T ss_pred             CCCccCCCCC-CccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCC
Confidence            6899999877 9999999999999999999999999999999999999999999 9999999999999999999999 99


Q ss_pred             cHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCC
Q psy3899          87 TALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS  145 (923)
Q Consensus        87 TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~  145 (923)
                      ||||+|+..| +.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|+|
T Consensus        80 t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           80 RPVHDAAREG-FLDTLVVLHRAGARLDVCDA-WGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             CHHHHHHHHT-CHHHHHHHHHTCCCCCCCSS-SSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CHHHHHHHcC-CHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999 49999999999999999999 999999999999999999999999985

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=1.7e-26  Score=223.17  Aligned_cols=153  Identities=21%  Similarity=0.275  Sum_probs=142.1

Q ss_pred             CCcHhHHHHHcCcHHHHHHHHhC-CCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q psy3899         545 TVTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG  623 (923)
Q Consensus       545 g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~  623 (923)
                      +.||||+|+..|+.++++.|++. +.+++..+. .|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNR-FGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCT-TSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCC-CCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence            56899999999999999999998 336766554 49999999 9999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHC
Q psy3899         624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH  702 (923)
Q Consensus       624 ~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~  702 (923)
                      +.+++++|+++|++++.+|..|.||||+|+..| +.+++++|++. ++++.+|. .|.||||+|+..|+.+++++|+++
T Consensus        80 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~-~~~~~~~~-~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG-HTAVVSFLAAE-SDLHRRDA-RGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT-CHHHHHHHHTT-SCTTCCCT-TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhC-hHHHHHHHHhc-cCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHhh
Confidence            999999999999999999999999999999988 89999999999 99999998 999999999999999999999875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=2.4e-27  Score=229.08  Aligned_cols=146  Identities=21%  Similarity=0.214  Sum_probs=120.6

Q ss_pred             ccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCc-HHH
Q psy3899          12 DAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT-ALM   90 (923)
Q Consensus        12 n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~T-pL~   90 (923)
                      +..+.. |.||||+||..|+.++|++|+++|++++.+|..|+||||+|+ .|+.+++++|+++|++++.+|..|.| |||
T Consensus         6 ~~~~~~-~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~   83 (156)
T 1bi7_B            6 GSSMEP-SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVH   83 (156)
T ss_dssp             ----CC-STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHH
T ss_pred             cCCCcc-chHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence            334444 999999999999999999999999999999999999999996 99999999999999999999999999 999


Q ss_pred             HHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHH
Q psy3899          91 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLE  161 (923)
Q Consensus        91 ~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~  161 (923)
                      +|+..|+ .+++++|+++|++++.+|. .|.||||+|+..|+.++|++|+++|++++.+|..|.||.+-+.
T Consensus        84 ~A~~~~~-~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~~  152 (156)
T 1bi7_B           84 DAAREGF-LDTLVVLHRAGARLDVRDA-WGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPS  152 (156)
T ss_dssp             HHHHHTC-HHHHHHHHHHTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             HHHHCCC-HHHHHHHHHcCCCCcccCC-CCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccCC
Confidence            9999995 9999999999999999999 9999999999999999999999999999999999999987543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=7.3e-27  Score=243.09  Aligned_cols=158  Identities=16%  Similarity=0.129  Sum_probs=119.3

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcC
Q psy3899          18 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF   97 (923)
Q Consensus        18 ~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~   97 (923)
                      .|.||||.|++.|+.+.|+.|+++|++++. +..|.||||.|+..|+.++|++|+++|+++|.+|..|.||||+||..|+
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~   82 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH   82 (239)
T ss_dssp             ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTC
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            389999999999999999999999999986 4789999999999999999999999999999999999999999999995


Q ss_pred             CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCC-ChHHHH--HhhcCCCCCchhhh
Q psy3899          98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGL-TPFMLL--EENIGAPWLGKATV  174 (923)
Q Consensus        98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~-t~L~~A--~~~g~~~~~~~~~v  174 (923)
                       .+++++|+++|++++.+|. .|.||||+|+..|+.++|++|+++|++++.++..|. ||||+|  +..|+.+     ++
T Consensus        83 -~~~v~~Ll~~ga~~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~-----~~  155 (239)
T 1ycs_B           83 -TEIVKFLVQFGVNVNAADS-DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQ-----CS  155 (239)
T ss_dssp             -HHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCC-----HH
T ss_pred             -HHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHH-----HH
Confidence             9999999999999999999 999999999999999999999999999999998887 999999  7889999     99


Q ss_pred             hHHHHHHhh
Q psy3899         175 DKITELKDH  183 (923)
Q Consensus       175 ~~L~~~~~~  183 (923)
                      ++|++....
T Consensus       156 ~~Ll~~~a~  164 (239)
T 1ycs_B          156 QFLYGVQEK  164 (239)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHhhhc
Confidence            999984433

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=8e-27  Score=231.56  Aligned_cols=153  Identities=14%  Similarity=0.140  Sum_probs=140.3

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCChHHHHHHHhCcH----HHHHHHHHCCCcccccCCCCCcHHHHHH
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADPTLMD-SEGSTCIHQAAQFGHT----RIVAYLVAKGINVNLQDRNGMTALMWSA   93 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d-~~g~TpLh~Aa~~g~~----~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa   93 (923)
                      +.++|+.||+.|+.+.|+.+++.+.  +.++ ..|+||||+|+.+|+.    +++++|+++|+++|.+|.+|+||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            5689999999999999999998764  4555 7899999999999975    5999999999999999999999999999


Q ss_pred             HhcCC-----CchhHHHHhcCCCcccccccCCC-cHHHHHHHh-----CcHHHHHHHHh-cCCCCCCCCCCCCChHHHHH
Q psy3899          94 YKVFS-----LDPTRLLITFGASTTIQDKIHGN-VALHWAIYA-----KNHVAITTLVS-HTSSLEIPNAQGLTPFMLLE  161 (923)
Q Consensus        94 ~~g~~-----~~vv~lLl~~ga~~~~~d~~~g~-T~L~~A~~~-----g~~~iv~~Ll~-~ga~~~~~~~~g~t~L~~A~  161 (923)
                      ..|+.     .+++++|+++|+++|.+|. .|. ||||+|+..     ++.+++++|++ +|++++.+|..|.||||+|+
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~-~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~  162 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITALYK-PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK  162 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSCBG-GGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCccCC-CcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Confidence            99852     4679999999999999999 999 999999994     45679999999 99999999999999999999


Q ss_pred             hhcCCCCCchhhhhHHHH
Q psy3899         162 ENIGAPWLGKATVDKITE  179 (923)
Q Consensus       162 ~~g~~~~~~~~~v~~L~~  179 (923)
                      +.|+.+     ++++|.+
T Consensus       163 ~~~~~~-----~v~~L~~  175 (186)
T 3t8k_A          163 RCQKPI-----ALKMMED  175 (186)
T ss_dssp             TTTCHH-----HHHHHHH
T ss_pred             HcCCHH-----HHHHHHH
Confidence            999999     9999987

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=2.3e-26  Score=228.24  Aligned_cols=163  Identities=18%  Similarity=0.155  Sum_probs=142.6

Q ss_pred             CCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCChHHHHHH
Q psy3899         545 TVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL----DSVVLLIQHGADPTLMDSEGSTCIHQAA  620 (923)
Q Consensus       545 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~  620 (923)
                      ++++|+.|++.|+.+.++.+++.+.+.  .++..|+||||+|+..|+.    +++++|+++|+|++.+|..|.||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            568999999999999999999887543  3324489999999999975    5899999999999999999999999999


Q ss_pred             HcCc------HHHHHHHHHcCCCCCccCCCCC-cHHHHHHHhhC----CcchHHHHHh-cCCCCcccccCCCChHHHHHH
Q psy3899         621 QFGH------TRIVAYLVAKGINVNLQDRNGM-TALMWSAYKVF----SLDPTRLLIT-FGASTTIQDKIHGNVALHWAI  688 (923)
Q Consensus       621 ~~~~------~~~v~~Ll~~g~~~~~~d~~g~-t~Lh~a~~~~~----~~~~~~~Ll~-~ga~~~~~d~~~g~TpLh~A~  688 (923)
                      ..++      .+++++|+++|+++|.+|..|+ ||||+|+..+.    ..+++++|++ .|++++.+|. .|.||||+|+
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~-~G~TpL~~A~  162 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK-WGLTALEFVK  162 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCT-TSCCHHHHHH
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCC-CCCCHHHHHH
Confidence            9886      5789999999999999999999 99999998431    3468899999 9999999998 9999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCC
Q psy3899         689 YAKNHVAITTLVSHTSSLEIPN  710 (923)
Q Consensus       689 ~~~~~~~v~~Ll~~gad~~~~d  710 (923)
                      ..|+.++|++|+++..+.++++
T Consensus       163 ~~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          163 RCQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             TTTCHHHHHHHHHHHHHHTCCC
T ss_pred             HcCCHHHHHHHHHHHHHHhccc
Confidence            9999999999998876666665

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=3.1e-25  Score=208.73  Aligned_cols=124  Identities=31%  Similarity=0.364  Sum_probs=119.8

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcC
Q psy3899          18 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF   97 (923)
Q Consensus        18 ~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~   97 (923)
                      .|.||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| 
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~-   91 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG-   91 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT-
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC-
Confidence            3889999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcC
Q psy3899          98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT  143 (923)
Q Consensus        98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~g  143 (923)
                      +.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|
T Consensus        92 ~~~~v~~Ll~~g~~~~~~~~-~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           92 HLEIAEVLLKHGADVNAQDK-FGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CHHHHHHHHHcCCCCcCcCC-CCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            59999999999999999998 9999999999999999999999876

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=1e-25  Score=217.63  Aligned_cols=142  Identities=21%  Similarity=0.212  Sum_probs=103.4

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCc-HHHHHHHh
Q psy3899         577 DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT-ALMWSAYK  655 (923)
Q Consensus       577 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t-~Lh~a~~~  655 (923)
                      ..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+ .|+.+++++|+++|++++.+|..|.| |||+|+..
T Consensus        10 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~   88 (156)
T 1bi7_B           10 EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAARE   88 (156)
T ss_dssp             CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             ccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHC
Confidence            34778888888888888888888888888888888888888874 77888888888888888888888888 88888877


Q ss_pred             hCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q psy3899         656 VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLE  721 (923)
Q Consensus       656 ~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~  721 (923)
                      + +.+++++|+++|++++.+|. .|+||||+|+..|+.+++++|+++|++++.+|..|.||.+-+.
T Consensus        89 ~-~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~~  152 (156)
T 1bi7_B           89 G-FLDTLVVLHRAGARLDVRDA-WGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPS  152 (156)
T ss_dssp             T-CHHHHHHHHHHTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             C-CHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccCC
Confidence            7 78888888888888888887 8888888888888888888888888888888888888877543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=2.9e-25  Score=208.95  Aligned_cols=133  Identities=22%  Similarity=0.264  Sum_probs=91.7

Q ss_pred             CcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCC-CCc
Q psy3899         569 AIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-GMT  647 (923)
Q Consensus       569 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~-g~t  647 (923)
                      ++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+. |+.+++++|+++|++++.+|.. |.|
T Consensus         3 ~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            3 PGIHMLGGS-SDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCCSCCCCC-CSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CCccCCCCC-CccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            344444333 6666666666666666666666666666666667777777777 7777777777777777777776 677


Q ss_pred             HHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCC
Q psy3899         648 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS  705 (923)
Q Consensus       648 ~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad  705 (923)
                      |||+|+..+ +.+++++|+++|++++.+|. .|+||||+|+..|+.+++++|+++|+|
T Consensus        81 ~L~~A~~~~-~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           81 PVHDAAREG-FLDTLVVLHRAGARLDVCDA-WGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHHT-CHHHHHHHHHTCCCCCCCSS-SSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHHcC-CHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            777777666 66777777777777777776 677777777777777777777777764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=9.3e-25  Score=202.29  Aligned_cols=125  Identities=37%  Similarity=0.538  Sum_probs=122.3

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCC
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS   98 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~   98 (923)
                      |+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| +
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~   80 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG-H   80 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-C
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC-h
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999999999 5


Q ss_pred             CchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCC
Q psy3899          99 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS  145 (923)
Q Consensus        99 ~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~  145 (923)
                      .+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|+|
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999999998 999999999999999999999999985

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=2.8e-25  Score=209.46  Aligned_cols=133  Identities=26%  Similarity=0.315  Sum_probs=107.3

Q ss_pred             CcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCc
Q psy3899           8 GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT   87 (923)
Q Consensus         8 g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~T   87 (923)
                      |+|+ .+|.. |.||||+|+..|+.++|++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus         1 G~d~-~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t   78 (137)
T 3c5r_A            1 GIDP-FTNHR-GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDS   78 (137)
T ss_dssp             ---C-CCCTT-CCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCC
T ss_pred             CCCC-CcCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCC
Confidence            6777 44544 888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCC
Q psy3899          88 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS  144 (923)
Q Consensus        88 pL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga  144 (923)
                      |||+|+..|+ .+++++|+++|++++.+|. .|.||||+|+..+..+++++|.+.+.
T Consensus        79 ~L~~A~~~~~-~~~v~~Ll~~ga~~~~~~~-~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           79 PLHDAAKNGH-VDIVKLLLSYGASRNAVNI-FGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHTTCCTTCCCT-TSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HHHHHHHcCC-HHHHHHHHHcCCCCCCCCC-CCCCHHHHHhhccHHHHHhhcccccc
Confidence            8888888884 8888888888888888888 88888888888888888887776554

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=8.2e-25  Score=217.43  Aligned_cols=137  Identities=23%  Similarity=0.278  Sum_probs=128.4

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccC-CCCCcHHHHHHHhc
Q psy3899          18 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYKV   96 (923)
Q Consensus        18 ~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d-~~g~TpL~~Aa~~g   96 (923)
                      .|.||||+||..|+.++|+.|++ |++++.+|.+|+||||+|+..|+.+++++|+++|+++|.+| ..|+||||+|+..|
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~  121 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV  121 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcC
Confidence            38999999999999999999999 99999999999999999999999999999999999999998 88999999999999


Q ss_pred             CCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhH
Q psy3899          97 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDK  176 (923)
Q Consensus        97 ~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~  176 (923)
                      + .+++++|+++|++++.+|. .|.||||+|+..++.                 ..+.++|++|+..|..+     ++++
T Consensus       122 ~-~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~-----i~~~  177 (183)
T 3deo_A          122 R-PEVVEALVELGADIEVEDE-RGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEK-----VINV  177 (183)
T ss_dssp             C-HHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHH-----HHHH
T ss_pred             c-HHHHHHHHHcCCCCcCCCC-CCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHH-----HHHH
Confidence            4 9999999999999999999 999999999986543                 35689999999999999     9998


Q ss_pred             HHH
Q psy3899         177 ITE  179 (923)
Q Consensus       177 L~~  179 (923)
                      |.+
T Consensus       178 L~~  180 (183)
T 3deo_A          178 LEG  180 (183)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            875

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=2.3e-24  Score=203.11  Aligned_cols=130  Identities=24%  Similarity=0.269  Sum_probs=120.2

Q ss_pred             CCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCC
Q psy3899          42 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN  121 (923)
Q Consensus        42 ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~  121 (923)
                      |+|+ .+|.+|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++.+|. .|.
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~g~~~~~~~~-~g~   77 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHG-HLKVVELLLQHKALVNTTGY-QND   77 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCG-GGC
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCcccCcCC-CCC
Confidence            6788 78999999999999999999999999999999999999999999999999 59999999999999999998 999


Q ss_pred             cHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899         122 VALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  179 (923)
Q Consensus       122 T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~  179 (923)
                      ||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..+     ++++|.+
T Consensus        78 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~-----~l~~l~~  130 (137)
T 3c5r_A           78 SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKS-----LLLLPEK  130 (137)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHH-----HHSCC--
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHH-----HHhhccc
Confidence            9999999999999999999999999999999999999999988777     7776655

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=2.1e-23  Score=196.25  Aligned_cols=124  Identities=31%  Similarity=0.364  Sum_probs=108.4

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhC
Q psy3899         578 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF  657 (923)
Q Consensus       578 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~  657 (923)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..+ 
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~-   91 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG-   91 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT-
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC-
Confidence            3778888888888888888888888888888888888888888888888888888888888888888889999888887 


Q ss_pred             CcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCC
Q psy3899         658 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT  703 (923)
Q Consensus       658 ~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~g  703 (923)
                      +.+++++|+++|++++.+|. .|+||||+|+..|+.+++++|+++|
T Consensus        92 ~~~~v~~Ll~~g~~~~~~~~-~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           92 HLEIAEVLLKHGADVNAQDK-FGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CHHHHHHHHHcCCCCcCcCC-CCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            88888888888888888887 8899999999999999999988876

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=3.4e-23  Score=191.72  Aligned_cols=125  Identities=37%  Similarity=0.538  Sum_probs=110.7

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCC
Q psy3899         579 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS  658 (923)
Q Consensus       579 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~  658 (923)
                      |.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..+ +
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~   80 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG-H   80 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-C
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC-h
Confidence            788888888888888888888888888888888888999988888888888888888888888888899999888887 7


Q ss_pred             cchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCC
Q psy3899         659 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS  705 (923)
Q Consensus       659 ~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad  705 (923)
                      .+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|+|
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            8888999988998888887 899999999999999999999998885

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=3.6e-24  Score=220.14  Aligned_cols=133  Identities=27%  Similarity=0.342  Sum_probs=114.6

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHC-CCcccccCCCCCcHHHHHHHhcC
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAYKVF   97 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~-ga~vn~~d~~g~TpL~~Aa~~g~   97 (923)
                      |.||||+||..|+.++|+.|++.|++++.+|..|+||||+||..|+.++|++|+++ |++++.+|..|.||||+|+..|+
T Consensus        73 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~  152 (222)
T 3ehr_A           73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGY  152 (222)
T ss_dssp             ESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTC
T ss_pred             cccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCC
Confidence            88999999999999999999999999999999999999999999999999999999 99999999999999999999995


Q ss_pred             CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCC
Q psy3899          98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQG  153 (923)
Q Consensus        98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g  153 (923)
                       .+++++|+++|++++.+|. .|.||||+|+..|+.++++.|++.|++....|..|
T Consensus       153 -~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          153 -ADIVQLLLAKGARTDLRNI-EKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             -HHHHHHHHHHTCCSCCCCT-TSCCHHHHCCSHHHHHHHC----------------
T ss_pred             -HHHHHHHHHcCCCCccccC-CCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence             9999999999999999999 99999999999999999999999999877776554

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=5.8e-24  Score=221.66  Aligned_cols=136  Identities=23%  Similarity=0.289  Sum_probs=128.8

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccC-CCCCcHHHHHHHhcC
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYKVF   97 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d-~~g~TpL~~Aa~~g~   97 (923)
                      |.||||+||..|+.++|+.|++ |++++.+|..|+||||+|+..|+.++|++|+++|+++|.+| ..|.||||+|+..|+
T Consensus        45 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~  123 (244)
T 3ui2_A           45 YETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR  123 (244)
T ss_dssp             HHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCC
Confidence            8999999999999999999999 99999999999999999999999999999999999999998 889999999999995


Q ss_pred             CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHH
Q psy3899          98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI  177 (923)
Q Consensus        98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L  177 (923)
                       .+++++|+++|++++.+|. .|.||||+|+..++                 +..+.||||+|+..|+.+     ++++|
T Consensus       124 -~~~v~~Ll~~ga~~~~~d~-~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~-----iv~~L  179 (244)
T 3ui2_A          124 -PEVVEALVELGADIEVEDE-RGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEK-----VINVL  179 (244)
T ss_dssp             -HHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHH-----HHHHH
T ss_pred             -HHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHH-----HHHHH
Confidence             9999999999999999999 99999999996332                 256899999999999999     99999


Q ss_pred             HH
Q psy3899         178 TE  179 (923)
Q Consensus       178 ~~  179 (923)
                      .+
T Consensus       180 ~~  181 (244)
T 3ui2_A          180 EG  181 (244)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=1.5e-23  Score=193.45  Aligned_cols=117  Identities=25%  Similarity=0.401  Sum_probs=102.5

Q ss_pred             CCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhc
Q psy3899          17 DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV   96 (923)
Q Consensus        17 ~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g   96 (923)
                      ..|.||||+|+..|+.++|+.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~   84 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG   84 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence            34889999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHH
Q psy3899          97 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVA  135 (923)
Q Consensus        97 ~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~i  135 (923)
                      + .+++++|+++|++++.+|. .|.||||+|+..+..++
T Consensus        85 ~-~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           85 H-VSCVKLLLSKGADKTVKGP-DGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             C-HHHHHHHHHTTCCTTCCCT-TSCCHHHHCCCHHHHHH
T ss_pred             C-HHHHHHHHHcCCCCCCcCC-CCCCHHHHhCCHHHHHH
Confidence            4 8999999999999999988 99999999955444443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.89  E-value=1.2e-23  Score=225.78  Aligned_cols=140  Identities=19%  Similarity=0.161  Sum_probs=126.7

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCc------cCCCCChHHHHHHHh---CcHHHHHHHHHCCCcccccCCCCCcHH
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADPTL------MDSEGSTCIHQAAQF---GHTRIVAYLVAKGINVNLQDRNGMTAL   89 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~------~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~ga~vn~~d~~g~TpL   89 (923)
                      +.++|+.|+..|+.+.|+.|++.|++++.      +|..|+||||+|+..   |+.+++++|+++|+++|.+|.+|+|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            45789999999999999999999999998      699999999999997   899999999999999999999999999


Q ss_pred             HHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCC
Q psy3899          90 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGA  166 (923)
Q Consensus        90 ~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~  166 (923)
                      |+|+..| +.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|++      .|.||||+|++.|+.
T Consensus       231 h~A~~~g-~~~~v~~Ll~~gad~~~~d~-~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          231 HYAALYN-QPDCLKLLLKGRALVGTVNE-AGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHTT-CHHHHHHHHHTTCCCSCCCT-TSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHHHcC-CHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            9999999 49999999999999999999 999999999999999999999999986      589999999998864

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=1.7e-22  Score=200.65  Aligned_cols=140  Identities=24%  Similarity=0.257  Sum_probs=129.9

Q ss_pred             CCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHH
Q psy3899         542 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMD-SEGSTCIHQAA  620 (923)
Q Consensus       542 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~Lh~A~  620 (923)
                      +..|.||||+|+..|+.++++.|++ |++++..+.. |+||||+|+..|+.+++++|+++|++++.+| ..|.||||+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~-g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDEN-GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            3578999999999999999999999 9999987654 9999999999999999999999999999998 88999999999


Q ss_pred             HcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHH
Q psy3899         621 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV  700 (923)
Q Consensus       621 ~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll  700 (923)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..+..                  . .+.|||++|+..|..+++++|.
T Consensus       119 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~------------------~-~~~~~l~~a~~~~~~~i~~~L~  179 (183)
T 3deo_A          119 GYVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------------T-PKGNPMQFGRRIGLEKVINVLE  179 (183)
T ss_dssp             HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT------------------C-CCCSHHHHHHHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC------------------c-ccccHHHHHHHcCHHHHHHHHH
Confidence            99999999999999999999999999999999987622                  2 6789999999999999999998


Q ss_pred             HC
Q psy3899         701 SH  702 (923)
Q Consensus       701 ~~  702 (923)
                      ++
T Consensus       180 ~~  181 (183)
T 3deo_A          180 GQ  181 (183)
T ss_dssp             TC
T ss_pred             Hh
Confidence            75

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=1.2e-22  Score=187.30  Aligned_cols=114  Identities=25%  Similarity=0.248  Sum_probs=107.4

Q ss_pred             CCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHH
Q psy3899          49 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI  128 (923)
Q Consensus        49 d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~  128 (923)
                      ++.|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+ .+++++|++.|++++.+|. .|.||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~d~-~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQ-LEILEFLLLKGADINAPDK-HHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTC-HHHHHHHHTTTCCTTCCCT-TSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCC-HHHHHHHHHcCCCCCcCCC-CCCCHHHHHH
Confidence            5678999999999999999999999999999999999999999999994 9999999999999999999 9999999999


Q ss_pred             HhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhc
Q psy3899         129 YAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI  164 (923)
Q Consensus       129 ~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g  164 (923)
                      ..|+.++|++|+++|++++.+|..|.||||+|...+
T Consensus        82 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHH
Confidence            999999999999999999999999999999996554

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=2.4e-22  Score=209.41  Aligned_cols=142  Identities=24%  Similarity=0.254  Sum_probs=131.8

Q ss_pred             CCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHH
Q psy3899         543 SETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMD-SEGSTCIHQAAQ  621 (923)
Q Consensus       543 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~Lh~A~~  621 (923)
                      ..|.||||+|+..|+.++++.|++ |++++..+.. |.||||+|+..|+.++|++|+++|++++.+| ..|.||||+|+.
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDEN-GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTT-SCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCC-CCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            468999999999999999999999 9999987655 9999999999999999999999999999998 889999999999


Q ss_pred             cCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHH
Q psy3899         622 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVS  701 (923)
Q Consensus       622 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~  701 (923)
                      .|+.+++++|+++|++++.+|..|.||||+|+..+..                  . .+.||||+|+..|+.+++++|++
T Consensus       121 ~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~------------------~-~~~~~l~~a~~~g~~~iv~~L~~  181 (244)
T 3ui2_A          121 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------------T-PKGNPMQFGRRIGLEKVINVLEG  181 (244)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT------------------C-CCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc------------------c-CCCCHHHHHHHcChHHHHHHHHH
Confidence            9999999999999999999999999999999975521                  2 68999999999999999999999


Q ss_pred             CCCC
Q psy3899         702 HTSS  705 (923)
Q Consensus       702 ~gad  705 (923)
                      ++.+
T Consensus       182 ~~~~  185 (244)
T 3ui2_A          182 QVFE  185 (244)
T ss_dssp             HHEE
T ss_pred             hccc
Confidence            8654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.86  E-value=9.1e-22  Score=215.77  Aligned_cols=144  Identities=21%  Similarity=0.197  Sum_probs=119.8

Q ss_pred             CccHHHHHHHc-CCHHHHHHHHHcCCCCCccC--CCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHh
Q psy3899          19 QATPLHWATRQ-GHLDSVVLLIQHGADPTLMD--SEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK   95 (923)
Q Consensus        19 g~T~Lh~Aa~~-g~~~~V~~Ll~~ga~~~~~d--~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~   95 (923)
                      +.|+||.|+.. |+.++|+.|+++|++++..|  ..|.||||+|+..|+.++|++|+++|+++|.+|..|+||||+|+..
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~  278 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL  278 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            56899999999 99999999999999999998  8999999999999999999999999999999999999999999999


Q ss_pred             cCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCC---CCCCCCCCCCChHHHHHhhc
Q psy3899          96 VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS---SLEIPNAQGLTPFMLLEENI  164 (923)
Q Consensus        96 g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga---~~~~~~~~g~t~L~~A~~~g  164 (923)
                      |+ .+++++|+++|++++.+|. .|.||||+|+..|+.++|++|+..+.   +....+..+.|+++++....
T Consensus       279 g~-~~~v~~LL~~Gad~~~~d~-~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          279 GH-TGLACLFLKRGADLGARDS-EGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             TC-HHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             Cc-HHHHHHHHHCcCCCCCcCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            95 9999999999999999999 99999999999999999999998764   34456677888888776553

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=7.1e-22  Score=209.56  Aligned_cols=125  Identities=23%  Similarity=0.214  Sum_probs=117.9

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCC------ccCCCCChHHHHHHHh---CcHHHHHHHHHCCCcccccCCCCCcHH
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADPT------LMDSEGSTCIHQAAQF---GHTRIVAYLVAKGINVNLQDRNGMTAL   89 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~------~~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~ga~vn~~d~~g~TpL   89 (923)
                      ..++|+.|+..|+.+.|+.+++.|++++      ..|..|+||||+|+..   |+.+++++|+++|+++|.+|..|+|||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpL  209 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHH
Confidence            4589999999999999999999999954      4588999999999999   899999999999999999999999999


Q ss_pred             HHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCC
Q psy3899          90 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS  145 (923)
Q Consensus        90 ~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~  145 (923)
                      |+|+..|+ .+++++|+++|++++.+|. .|.||||+|+..|+.++|++|+++|++
T Consensus       210 h~A~~~g~-~~~v~~Ll~~gad~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          210 HYCCLTDN-AECLKLLLRGKASIEIANE-SGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHTTC-HHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHcCC-HHHHHHHHHcCCCCCCccC-CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999994 9999999999999999999 999999999999999999999999874

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.85  E-value=7.3e-22  Score=211.94  Aligned_cols=137  Identities=21%  Similarity=0.151  Sum_probs=64.7

Q ss_pred             cHhHHHHHcCcHHHHHHHHhCCCccccc-----CCCCCchHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCChHHHH
Q psy3899         547 TLLHWAAINNRIEIMKYFISQGAIVDAI-----GGDLQATPLHWATRQ---GHLDSVVLLIQHGADPTLMDSEGSTCIHQ  618 (923)
Q Consensus       547 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~-----~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~  618 (923)
                      ++||.|+..|+.+.++.|++.|++++..     .+..|.||||+|+..   |+.+++++|+++|++++.+|..|.||||+
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~  232 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY  232 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHH
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence            4455555555555555555555554432     222345555555544   44555555555555555555555555555


Q ss_pred             HHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcC
Q psy3899         619 AAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAK  691 (923)
Q Consensus       619 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~  691 (923)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..+ +.+++++|+++|++       .|.||||+|+..|
T Consensus       233 A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~-~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g  297 (301)
T 2b0o_E          233 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKH-HKECEELLEQAQAG-------TFAFPLHVDYSWV  297 (301)
T ss_dssp             HHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHT-CHHHHHHHHHHHHH-------TTSSCCC------
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHHhcCC-------CCCChhHHHHhcC
Confidence            55555555555555555555555555555555554444 44455555444432       2445555554444

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.85  E-value=5.7e-22  Score=203.65  Aligned_cols=133  Identities=27%  Similarity=0.324  Sum_probs=94.2

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHhhC
Q psy3899         579 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAYKVF  657 (923)
Q Consensus       579 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~Lh~a~~~~~  657 (923)
                      |.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..| 
T Consensus        73 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~-  151 (222)
T 3ehr_A           73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKG-  151 (222)
T ss_dssp             ESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHT-
T ss_pred             cccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcC-
Confidence            67788888888888888888887888777777788888888888888888888877 7888888888888888888777 


Q ss_pred             CcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy3899         658 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQG  713 (923)
Q Consensus       658 ~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g  713 (923)
                      +.+++++|+++|++++.+|. .|.||||+|+..|+.++++.|++.|++.+.+|.+|
T Consensus       152 ~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          152 YADIVQLLLAKGARTDLRNI-EKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             CHHHHHHHHHHTCCSCCCCT-TSCCHHHHCCSHHHHHHHC----------------
T ss_pred             CHHHHHHHHHcCCCCccccC-CCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence            77888888888888888777 78888888888888888888888888777666544

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=5e-21  Score=166.66  Aligned_cols=92  Identities=42%  Similarity=0.621  Sum_probs=71.0

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCC
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS   98 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~   98 (923)
                      |+||||+|+..|+.++|++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+ 
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-   80 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH-   80 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC-
Confidence            6777888887777788887777777777777777788887777777777777777777777777777777777777773 


Q ss_pred             CchhHHHHhcCCC
Q psy3899          99 LDPTRLLITFGAS  111 (923)
Q Consensus        99 ~~vv~lLl~~ga~  111 (923)
                      .+++++|+++|++
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            7777777777764

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=4e-20  Score=196.08  Aligned_cols=171  Identities=20%  Similarity=0.153  Sum_probs=140.0

Q ss_pred             HhcCCCCC-----CCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccC------------------------------CC
Q psy3899         533 EAGQDVNE-----PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIG------------------------------GD  577 (923)
Q Consensus       533 ~~~~~~~~-----~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~------------------------------~~  577 (923)
                      .-|..++.     .|.++.+.++.+...|+..+.+++...-.......                              ..
T Consensus        49 ~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~  128 (278)
T 1dcq_A           49 ELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTA  128 (278)
T ss_dssp             HHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHH
T ss_pred             hcCCCcceeeeeecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccc
Confidence            33666653     67889999999999999877766643221110000                              00


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCC------CCCCCCChHHHHHHHc---CcHHHHHHHHHcCCCCCccCCCCCcH
Q psy3899         578 LQATPLHWATRQGHLDSVVLLIQHGADPT------LMDSEGSTCIHQAAQF---GHTRIVAYLVAKGINVNLQDRNGMTA  648 (923)
Q Consensus       578 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~------~~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~g~~~~~~d~~g~t~  648 (923)
                      ...++|+.|+..|+.+.++.+++.|++++      ..|..|.||||+|+..   |+.+++++|+++|+++|.+|..|+||
T Consensus       129 ~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~Tp  208 (278)
T 1dcq_A          129 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTA  208 (278)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCH
T ss_pred             hhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCH
Confidence            12368999999999999999999999844      4578899999999998   88999999999999999999999999


Q ss_pred             HHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCC
Q psy3899         649 LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS  705 (923)
Q Consensus       649 Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad  705 (923)
                      ||+|+..| +.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|+++|++
T Consensus       209 Lh~A~~~g-~~~~v~~Ll~~gad~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          209 LHYCCLTD-NAECLKLLLRGKASIEIANE-SGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHcC-CHHHHHHHHHcCCCCCCccC-CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999888 89999999999999999998 899999999999999999999999884

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.83  E-value=1.2e-20  Score=164.30  Aligned_cols=93  Identities=32%  Similarity=0.464  Sum_probs=88.8

Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHh
Q psy3899          51 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYA  130 (923)
Q Consensus        51 ~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~  130 (923)
                      +|+||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..| +.+++++|+++|++++.+|. .|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~d~-~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG-HLEVVKLLLEAGADVNAKDK-NGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHc
Confidence            5899999999999999999999999999999999999999999999 49999999999999999999 999999999999


Q ss_pred             CcHHHHHHHHhcCCC
Q psy3899         131 KNHVAITTLVSHTSS  145 (923)
Q Consensus       131 g~~~iv~~Ll~~ga~  145 (923)
                      |+.+++++|+++|++
T Consensus        79 ~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           79 GHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCCC
Confidence            999999999999975

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.82  E-value=3e-20  Score=203.70  Aligned_cols=143  Identities=21%  Similarity=0.202  Sum_probs=115.7

Q ss_pred             CchHHHHHHHc-CCHHHHHHHHHCCCCCCCCC--CCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHh
Q psy3899         579 QATPLHWATRQ-GHLDSVVLLIQHGADPTLMD--SEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK  655 (923)
Q Consensus       579 g~t~Lh~A~~~-g~~~~v~~Ll~~g~~~~~~d--~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~  655 (923)
                      +.|+||+|+.. |+.++++.|+++|++++..+  ..|.||||+|+..|+.+++++|+++|+++|..|..|+||||+|+..
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~  278 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL  278 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            57899999999 99999999999999999988  8899999999999999999999999999999999999999999988


Q ss_pred             hCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHhc
Q psy3899         656 VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS---SLEIPNAQGLTPFMLLEEN  723 (923)
Q Consensus       656 ~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~ga---d~~~~d~~g~tpl~~a~~~  723 (923)
                      + +.+++++|+++|++++.+|. .|.||||+|+..|+.+++++|++.+.   +....+..+.|+++++...
T Consensus       279 g-~~~~v~~LL~~Gad~~~~d~-~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          279 G-HTGLACLFLKRGADLGARDS-EGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             T-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             C-cHHHHHHHHHCcCCCCCcCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            8 89999999999999999998 99999999999999999999998864   4456677888999987764

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.81  E-value=1.2e-20  Score=171.47  Aligned_cols=103  Identities=32%  Similarity=0.427  Sum_probs=64.8

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCC
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS   98 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~   98 (923)
                      |+||||+||..|+.++|+.|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| +
T Consensus         9 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~-~   87 (115)
T 2l6b_A            9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNG-H   87 (115)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTT-C
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCC-C
Confidence            666666666666666666666666666666666666666666666666666666666666666666666666666666 3


Q ss_pred             CchhHHHHhcCCCcccccccCCCcH
Q psy3899          99 LDPTRLLITFGASTTIQDKIHGNVA  123 (923)
Q Consensus        99 ~~vv~lLl~~ga~~~~~d~~~g~T~  123 (923)
                      .+++++|+++|++++.++. .|.||
T Consensus        88 ~~~~~~Ll~~ga~~n~~~~-~~~~~  111 (115)
T 2l6b_A           88 HEIVKLLDAKGADVNARSW-GSSHH  111 (115)
T ss_dssp             HHHHHHHHTTSSSHHHHSC-CCC--
T ss_pred             HHHHHHHHHcCCCCCcCCc-ccccc
Confidence            6666666666666666655 55554

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.81  E-value=1.6e-20  Score=170.72  Aligned_cols=109  Identities=26%  Similarity=0.331  Sum_probs=103.0

Q ss_pred             ccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHH
Q psy3899          47 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW  126 (923)
Q Consensus        47 ~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~  126 (923)
                      .+|.+|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++.+|. .|.||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~-~~~~~~~Ll~~g~~~~~~d~-~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG-HAEIVKLLLAKGADVNARSK-DGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTT-CHHHHHHHTTTTCCTTCCCT-TCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC-cHHHHHHHHHcCCCCcccCC-CCCCHHHH
Confidence            47899999999999999999999999999999999999999999999999 59999999999999999999 99999999


Q ss_pred             HHHhCcHHHHHHHHhcCCCCCCCCCCCCChH
Q psy3899         127 AIYAKNHVAITTLVSHTSSLEIPNAQGLTPF  157 (923)
Q Consensus       127 A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L  157 (923)
                      |+..|+.+++++|+++|++++.++..|.||-
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            9999999999999999999999999999874

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.73  E-value=8.6e-18  Score=151.07  Aligned_cols=90  Identities=37%  Similarity=0.447  Sum_probs=65.2

Q ss_pred             ccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHH
Q psy3899          14 IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA   93 (923)
Q Consensus        14 ~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa   93 (923)
                      .+.+ |.||||+||..|+.++|++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus        20 ~~~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~   98 (110)
T 2zgd_A           20 MGSD-LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI   98 (110)
T ss_dssp             --CC-HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cCCc-cchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHH
Confidence            3444 777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HhcCCCchhHHH
Q psy3899          94 YKVFSLDPTRLL  105 (923)
Q Consensus        94 ~~g~~~~vv~lL  105 (923)
                      ..|+ .+++++|
T Consensus        99 ~~~~-~~~~~~L  109 (110)
T 2zgd_A           99 DNGN-EDLAEIL  109 (110)
T ss_dssp             HHTC-HHHHHHH
T ss_pred             HcCC-HHHHHHh
Confidence            7773 6776665

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.71  E-value=1.5e-17  Score=149.42  Aligned_cols=93  Identities=31%  Similarity=0.360  Sum_probs=85.0

Q ss_pred             CCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHH
Q psy3899          45 PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL  124 (923)
Q Consensus        45 ~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L  124 (923)
                      +...|.+|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++.+|. .|.|||
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~-~~~~v~~Ll~~ga~~~~~d~-~g~tpl   94 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG-HLEVVKLLLEAGADVXAQDK-FGKTAF   94 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCcccccc-CCCcHH
Confidence            4456889999999999999999999999999999999999999999999999 59999999999999999998 999999


Q ss_pred             HHHHHhCcHHHHHHH
Q psy3899         125 HWAIYAKNHVAITTL  139 (923)
Q Consensus       125 ~~A~~~g~~~iv~~L  139 (923)
                      |+|+..|+.+++++|
T Consensus        95 ~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           95 DISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHh
Confidence            999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	923
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-27
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-22
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-22
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-22
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-19
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-17
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-17
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-15
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-15
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-20
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-18
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-17
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-15
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-20
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-17
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-18
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-16
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-15
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-17
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.003
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-11
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-11
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-10
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	3e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	3e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.002
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.002
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (282), Expect = 3e-27
 Identities = 59/222 (26%), Positives = 92/222 (41%), Gaps = 36/222 (16%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            ++ G   N  + +  T LH AA     E+ KY +   A V+A   D Q TPLH A R G
Sbjct: 19  LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIG 77

Query: 591 HLDSVVLLIQHGADP---------------------------------TLMDSEGSTCIH 617
           H + V LL+++ A+P                                   M  +G T +H
Sbjct: 78  HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLH 137

Query: 618 QAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 677
            AA++G  R+   L+ +  + N   +NG+T L  + +   +LD  +LL+  G S      
Sbjct: 138 VAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN-NLDIVKLLLPRGGSPHSPAW 196

Query: 678 IHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 719
            +G   LH A          +L+ +  S    + QG+TP  L
Sbjct: 197 -NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL 237

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (277), Expect = 1e-26
 Identities = 47/206 (22%), Positives = 74/206 (35%), Gaps = 36/206 (17%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
           T LH A+    + I+K  + +GA  +     ++ TPLH A R GH +    L+Q+ A   
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAK-------------------------------- 634
               +  T +H AA+ GHT +V  L+                                  
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 120

Query: 635 -GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH 693
              +     + G T L  +A     +    LL+   A      K +G   LH A++  N 
Sbjct: 121 KEASQACMTKKGFTPLHVAAKY-GKVRVAELLLERDAHPNAAGK-NGLTPLHVAVHHNNL 178

Query: 694 VAITTLVSHTSSLEIPNAQGLTPFML 719
             +  L+    S   P   G TP  +
Sbjct: 179 DIVKLLLPRGGSPHSPAWNGYTPLHI 204

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.1 bits (243), Expect = 3e-22
 Identities = 50/255 (19%), Positives = 86/255 (33%), Gaps = 35/255 (13%)

Query: 532 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA----------- 580
           ++    VN    +  T LH AA      ++K  +   A  +                   
Sbjct: 53  LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV 112

Query: 581 ---------------------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 619
                                TPLH A + G +    LL++  A P      G T +H A
Sbjct: 113 ETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVA 172

Query: 620 AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 679
               +  IV  L+ +G + +    NG T L  +A +   ++  R L+ +G S   +    
Sbjct: 173 VHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ-VEVARSLLQYGGSANAESV-Q 230

Query: 680 GNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE 739
           G   LH A    +   +  L+S  ++  + N  GLTP  L+ +  G   +    +     
Sbjct: 231 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQE-GHVPVADVLIKHGVM 289

Query: 740 LKDHYNTQQNIIHRF 754
           +          +H  
Sbjct: 290 VDATTRMGYTPLHVA 304

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.7 bits (242), Expect = 4e-22
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 2/139 (1%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
           TPLH A+  GHL  V  L+Q GA P + + +  T +H AA+ GHT +  YL+     VN 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 140
           + ++  T L  +A      +  +LL+   A+  +      +  LH A    +   +  L+
Sbjct: 62  KAKDDQTPLHCAARI-GHTNMVKLLLENNANPNLATTAG-HTPLHIAAREGHVETVLALL 119

Query: 141 SHTSSLEIPNAQGLTPFML 159
              +S      +G TP  +
Sbjct: 120 EKEASQACMTKKGFTPLHV 138

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.1 bits (230), Expect = 1e-20
 Identities = 43/145 (29%), Positives = 63/145 (43%), Gaps = 5/145 (3%)

Query: 536 QDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSV 595
            + N  +   +T LH  A    + +    I  G +VDA       TPLH A+  G++  V
Sbjct: 255 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY-TPLHVASHYGNIKLV 313

Query: 596 VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 655
             L+QH AD       G + +HQAAQ GHT IV  L+  G + N    +G T L  +   
Sbjct: 314 KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL 373

Query: 656 VFSLDPTRLLITF---GASTTIQDK 677
              +  T +L       +   + DK
Sbjct: 374 -GYISVTDVLKVVTDETSFVLVSDK 397

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (227), Expect = 3e-20
 Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 3/191 (1%)

Query: 533 EAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL 592
             G   + P     T LH AA  N++E+ +  +  G   +A       TPLH A ++GH 
Sbjct: 186 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES-VQGVTPLHLAAQEGHA 244

Query: 593 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 652
           + V LL+   A+  L +  G T +H  AQ GH  +   L+  G+ V+   R G T L  +
Sbjct: 245 EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA 304

Query: 653 AYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQ 712
                ++   + L+   A    + K  G   LH A    +   +T L+ + +S    ++ 
Sbjct: 305 -SHYGNIKLVKFLLQHQADVNAKTK-LGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD 362

Query: 713 GLTPFMLLEEN 723
           G TP  + +  
Sbjct: 363 GTTPLAIAKRL 373

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (226), Expect = 4e-20
 Identities = 45/208 (21%), Positives = 78/208 (37%), Gaps = 3/208 (1%)

Query: 511 DWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI 570
                  +      +      +E          +  T LH AA   ++ + +  + + A 
Sbjct: 98  AGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH 157

Query: 571 VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAY 630
            +A G +   TPLH A    +LD V LL+  G  P      G T +H AA+     +   
Sbjct: 158 PNAAGKN-GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 216

Query: 631 LVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYA 690
           L+  G + N +   G+T L  +A +    +   LL++  A+  + +K  G   LH     
Sbjct: 217 LLQYGGSANAESVQGVTPLHLAAQEGH-AEMVALLLSKQANGNLGNK-SGLTPLHLVAQE 274

Query: 691 KNHVAITTLVSHTSSLEIPNAQGLTPFM 718
            +      L+ H   ++     G TP  
Sbjct: 275 GHVPVADVLIKHGVMVDATTRMGYTPLH 302

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.9 bits (206), Expect = 1e-17
 Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            ++ G  V+       T LH A+    I+++K+ +   A V+A       +PLH A +QG
Sbjct: 283 LIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGY-SPLHQAAQQG 341

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL---VAKGINVNLQDRNGMT 647
           H D V LL+++GA P  + S+G+T +  A + G+  +   L     +   V + D++ M+
Sbjct: 342 HTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 401

Query: 648 A 648
            
Sbjct: 402 F 402

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (205), Expect = 2e-17
 Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 3/173 (1%)

Query: 22  PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ 81
           PLH A + G +    LL++  A P      G T +H A    +  IV  L+ +G + +  
Sbjct: 135 PLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP 194

Query: 82  DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVS 141
             NG T L  +A +   ++  R L+ +G S   +    G   LH A    +   +  L+S
Sbjct: 195 AWNGYTPLHIAAKQNQ-VEVARSLLQYGGSANAESV-QGVTPLHLAAQEGHAEMVALLLS 252

Query: 142 HTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRF 194
             ++  + N  GLTP  L+ +  G   +    +     +          +H  
Sbjct: 253 KQANGNLGNKSGLTPLHLVAQE-GHVPVADVLIKHGVMVDATTRMGYTPLHVA 304

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (202), Expect = 4e-17
 Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 36/192 (18%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADP--------------- 45
            KY +   A V+A   D Q TPLH A R GH + V LL+++ A+P               
Sbjct: 49  AKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAA 107

Query: 46  ------------------TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 87
                               M  +G T +H AA++G  R+   L+ +  + N   +NG+T
Sbjct: 108 REGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLT 167

Query: 88  ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE 147
            L  + +   +LD  +LL+  G S       +G   LH A          +L+ +  S  
Sbjct: 168 PLHVAVHHN-NLDIVKLLLPRGGSPHSPAW-NGYTPLHIAAKQNQVEVARSLLQYGGSAN 225

Query: 148 IPNAQGLTPFML 159
             + QG+TP  L
Sbjct: 226 AESVQGVTPLHL 237

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (188), Expect = 3e-15
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 2/143 (1%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
           TPLH A ++GH + V LL+   A+  L +  G T +H  AQ GH  +   L+  G+ V+ 
Sbjct: 233 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA 292

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 140
             R G T L  +     ++   + L+   A    + K  G   LH A    +   +T L+
Sbjct: 293 TTRMGYTPLHVA-SHYGNIKLVKFLLQHQADVNAKTK-LGYSPLHQAAQQGHTDIVTLLL 350

Query: 141 SHTSSLEIPNAQGLTPFMLLEEN 163
            + +S    ++ G TP  + +  
Sbjct: 351 KNGASPNEVSSDGTTPLAIAKRL 373

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (187), Expect = 3e-15
 Identities = 38/120 (31%), Positives = 53/120 (44%), Gaps = 5/120 (4%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
               I  G +VDA       TPLH A+  G++  V  L+QH AD       G + +HQAA
Sbjct: 280 ADVLIKHGVMVDATTRMGY-TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAA 338

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF---GASTTIQDK 117
           Q GHT IV  L+  G + N    +G T L  +      +  T +L       +   + DK
Sbjct: 339 QQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL-GYISVTDVLKVVTDETSFVLVSDK 397

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 5e-15
 Identities = 35/146 (23%), Positives = 67/146 (45%), Gaps = 7/146 (4%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
           TPLH   ++GH+    +LI+HG         G T +H A+ +G+ ++V +L+    +VN 
Sbjct: 266 TPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA 325

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT--- 137
           + + G + L  +A +    D   LL+  GAS        G   L  A     ++++T   
Sbjct: 326 KTKLGYSPLHQAAQQ-GHTDIVTLLLKNGASPNEVSS-DGTTPLAIAKR-LGYISVTDVL 382

Query: 138 -TLVSHTSSLEIPNAQGLTPFMLLEE 162
             +   TS + + +   ++    ++E
Sbjct: 383 KVVTDETSFVLVSDKHRMSFPETVDE 408

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 2e-06
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 86  MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 145
           +T L  +++    L   + L+  GAS  + +       LH A  A +      L+ + + 
Sbjct: 1   LTPLHVASFMG-HLPIVKNLLQRGASPNVSNV-KVETPLHMAARAGHTEVAKYLLQNKAK 58

Query: 146 LEIPNAQGLTPFML 159
           +        TP   
Sbjct: 59  VNAKAKDDQTPLHC 72

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 2e-06
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
           +T L  +++    L   + L+  GAS  + +       LH A  A +      L+ + + 
Sbjct: 1   LTPLHVASFMG-HLPIVKNLLQRGASPNVSNV-KVETPLHMAARAGHTEVAKYLLQNKAK 58

Query: 706 LEIPNAQGLTPFML 719
           +        TP   
Sbjct: 59  VNAKAKDDQTPLHC 72

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.2 bits (238), Expect = 2e-22
 Identities = 49/225 (21%), Positives = 80/225 (35%), Gaps = 10/225 (4%)

Query: 459 MTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEV 518
           +   +          IA           +G   N  DF G++ F     E   + K   +
Sbjct: 66  VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAF----MEAAVYGKVKAL 121

Query: 519 YTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQ-GAIVDAI--- 574
                  ++     +  +D         T L  AA    +E++K  + + GA V+A    
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181

Query: 575 GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
           G +     L  +          LL+ HGAD  +    G T +  A +  H  +V  L+ +
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241

Query: 635 -GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 678
             I +N  D +G TAL+ +           LL   GAST   D +
Sbjct: 242 EHIEINDTDSDGKTALLLAVEL-KLKKIAELLCKRGASTDCGDLV 285

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (215), Expect = 2e-19
 Identities = 52/244 (21%), Positives = 83/244 (34%), Gaps = 17/244 (6%)

Query: 483 SPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVY--TEPTSLSDKYQFVEAGQDVNE 540
           +P H     +  D           P                  S+     F+  G DVNE
Sbjct: 41  TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE 100

Query: 541 PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQ---------ATPLHWATRQGH 591
            D    T    AA+  +++ +K+   +GA V+      +         AT L  A  +GH
Sbjct: 101 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 160

Query: 592 LDSVVLLIQH-GADPTLMDSEGSTCIHQA----AQFGHTRIVAYLVAKGINVNLQDRNGM 646
           ++ + +L+   GAD    D+ G   +  A           I   L+  G +VN++   G 
Sbjct: 161 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 220

Query: 647 TALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSL 706
           T L+ +  K       RLL          D   G  AL  A+  K       L    +S 
Sbjct: 221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDS-DGKTALLLAVELKLKKIAELLCKRGAST 279

Query: 707 EIPN 710
           +  +
Sbjct: 280 DCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.5 bits (200), Expect = 2e-17
 Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 8/164 (4%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
            LL  A  N  +++++  +  GA V+    +   TPLH A +    D V LL++HGADP 
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF--------S 658
           L    G+T    AA  G  +++   ++KG +VN  D  G TA M +A             
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 659 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 702
                 L         + +  G  AL  A    +   +  L+  
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 170

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (196), Expect = 6e-17
 Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 6/136 (4%)

Query: 20  ATPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQA----AQFGHTRIVAYLVAK 74
           AT L  A  +GH++ + +L+   GAD    D+ G   +  A           I   L+  
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208

Query: 75  GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 134
           G +VN++   G T L+ +  K       RLL          D   G  AL  A+  K   
Sbjct: 209 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS-DGKTALLLAVELKLKK 267

Query: 135 AITTLVSHTSSLEIPN 150
               L    +S +  +
Sbjct: 268 IAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (186), Expect = 1e-15
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSV-VLLIQHGADPTLMDSEGSTCIHQA 59
               +  GA V+  G   + TPL  A  + HL  V  LL Q   +    DS+G T +  A
Sbjct: 202 THLLLDHGADVNVRGERGK-TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260

Query: 60  AQFGHTRIVAYLVAKGINVNLQD 82
            +    +I   L  +G + +  D
Sbjct: 261 VELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (179), Expect = 9e-15
 Identities = 29/237 (12%), Positives = 61/237 (25%), Gaps = 3/237 (1%)

Query: 374 KNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFIL 433
            + +  V  +              A  +            ++       +    + GF  
Sbjct: 49  MSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTA 108

Query: 434 LNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNF 493
                    +  L      +  ++ +    + +  R     A          H   L+  
Sbjct: 109 FMEAAVYGKVKAL-KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

Query: 494 VDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAA 553
           +D  G          R   +       +    +  +  ++ G DVN       T L  A 
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227

Query: 554 INNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMD 609
               + +++  + Q    ++    D + T L  A          LL + GA     D
Sbjct: 228 EKKHLGLVQRLLEQEHIEINDTDSDGK-TALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (151), Expect = 4e-11
 Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 8/150 (5%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           ++  +  GA V+    +   TPLH A +    D V LL++HGADP L    G+T    AA
Sbjct: 21  VQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAA 80

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF--------SLDPTRLLITFGAST 112
             G  +++   ++KG +VN  D  G TA M +A                   L       
Sbjct: 81  IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED 140

Query: 113 TIQDKIHGNVALHWAIYAKNHVAITTLVSH 142
             + +  G  AL  A    +   +  L+  
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDE 170

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 1e-06
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 51 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYK 95
          E +  + +A Q     +V  L+  G NVN Q+   G T L  +   
Sbjct: 4  EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM 49

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 1e-06
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 611 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYK 655
           E +  + +A Q     +V  L+  G NVN Q+   G T L  +   
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM 49

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.7 bits (216), Expect = 5e-20
 Identities = 55/196 (28%), Positives = 83/196 (42%), Gaps = 3/196 (1%)

Query: 528 KYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 587
           K   +         D ++ T LHWA      EI+++ +  G  V+        +PLH A 
Sbjct: 20  KESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAA 78

Query: 588 RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 647
             G  + V  L+  GA    ++  G T +H AA      I   L+  G N + +D    T
Sbjct: 79  SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEAT 138

Query: 648 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE 707
           A+  +A K   L    +L+ + AST IQD   GN  LH A   +       LVS  +S+ 
Sbjct: 139 AMHRAAAKGN-LKMIHILLYYKASTNIQDT-EGNTPLHLACDEERVEEAKLLVSQGASIY 196

Query: 708 IPNAQGLTPFMLLEEN 723
           I N +  TP  + +  
Sbjct: 197 IENKEEKTPLQVAKGG 212

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (205), Expect = 1e-18
 Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 1/156 (0%)

Query: 499 WSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRI 558
                    +         +             +  G  VN  +    T LH+AA  NR 
Sbjct: 57  LQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRH 116

Query: 559 EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ 618
           EI    +  GA  DA     +AT +H A  +G+L  + +L+ + A   + D+EG+T +H 
Sbjct: 117 EIAVMLLEGGANPDAKDHY-EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL 175

Query: 619 AAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 654
           A           LV++G ++ ++++   T L  +  
Sbjct: 176 ACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKG 211

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (194), Expect = 3e-17
 Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 5/136 (3%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +K  + +GA V+A+  +   TPLH+A  +   +  V+L++ GA+P   D   +T +H+AA
Sbjct: 86  VKALLGKGAQVNAVNQN-GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAA 144

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 120
             G+ +++  L+    + N+QD  G T L  +  +   ++  +LL++ GAS  I++K   
Sbjct: 145 AKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDE-ERVEEAKLLVSQGASIYIENK-EE 202

Query: 121 NVALHWAIYAKNHVAI 136
              L  A        I
Sbjct: 203 KTPLQVA--KGGLGLI 216

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (176), Expect = 8e-15
 Identities = 47/195 (24%), Positives = 72/195 (36%), Gaps = 36/195 (18%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDS--------------------------- 34
           +  ++  ++      D + T LHWA   GH +                            
Sbjct: 21  ESILADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS 79

Query: 35  ------VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA 88
                 V  L+  GA    ++  G T +H AA      I   L+  G N + +D    TA
Sbjct: 80  AGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATA 139

Query: 89  LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEI 148
           +  +A K   L    +L+ + AST IQD   GN  LH A   +       LVS  +S+ I
Sbjct: 140 MHRAAAKGN-LKMIHILLYYKASTNIQDT-EGNTPLHLACDEERVEEAKLLVSQGASIYI 197

Query: 149 PNAQGLTPFMLLEEN 163
            N +  TP  + +  
Sbjct: 198 ENKEEKTPLQVAKGG 212

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 1e-07
 Identities = 18/149 (12%), Positives = 38/149 (25%), Gaps = 34/149 (22%)

Query: 53  STCIHQAAQFGHTRIVA-YLVAKGINVNLQDRNGMTALMWSAYKVFSLDP---------- 101
           +  +   A  G    +   ++A        D++  TAL W+     +             
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 102 ----------------------TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL 139
                                  + L+  GA     ++ +G   LH+A     H     L
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNRHEIAVML 122

Query: 140 VSHTSSLEIPNAQGLTPFMLLEENIGAPW 168
           +   ++ +  +    T             
Sbjct: 123 LEGGANPDAKDHYEATAMHRAAAKGNLKM 151

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 1e-07
 Identities = 18/149 (12%), Positives = 38/149 (25%), Gaps = 34/149 (22%)

Query: 613 STCIHQAAQFGHTRIVA-YLVAKGINVNLQDRNGMTALMWSAYKVFSLDP---------- 661
           +  +   A  G    +   ++A        D++  TAL W+     +             
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 662 ----------------------TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL 699
                                  + L+  GA     ++ +G   LH+A     H     L
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNRHEIAVML 122

Query: 700 VSHTSSLEIPNAQGLTPFMLLEENIGAPW 728
           +   ++ +  +    T             
Sbjct: 123 LEGGANPDAKDHYEATAMHRAAAKGNLKM 151

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 90.0 bits (222), Expect = 7e-20
 Identities = 29/250 (11%), Positives = 62/250 (24%), Gaps = 28/250 (11%)

Query: 528 KYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA----IGGDLQA--- 580
           ++        +     +    +      N  ++ +      A  +     +  D      
Sbjct: 29  QHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGI 88

Query: 581 ---TPLHWATRQGHLDS---VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 634
                   A   G   +   + LL+       ++ +E       AA+ GH  ++  L   
Sbjct: 89  KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 148

Query: 635 GINVNLQDRN--GMTALMWSAYKVFSLDPTRLLITFGAS--TTIQDKIHGNVALHWAIYA 690
                +         A   +A     L     L     +  T +    +       A+  
Sbjct: 149 APTEIMAMIQAENYHAFRLAAENGH-LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR 207

Query: 691 KNHVAITTLVSHTSSLEIP-------NAQGLTPFMLLEENI---GAPWLGKATVDKITEL 740
            +H  I  L+     L            + + PF+    N           +  D + +L
Sbjct: 208 GHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDL 267

Query: 741 KDHYNTQQNI 750
                  Q  
Sbjct: 268 VTKSECLQGF 277

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 82.6 bits (203), Expect = 2e-17
 Identities = 26/187 (13%), Positives = 49/187 (26%), Gaps = 18/187 (9%)

Query: 21  TPLHWATRQGHLDS---VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 77
                A   G   +   + LL+       ++ +E       AA+ GH  ++  L      
Sbjct: 92  VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT 151

Query: 78  VNLQDRN--GMTALMWSAYKVFSLDPTRLLITFGAS--TTIQDKIHGNVALHWAIYAKNH 133
             +         A   +A     L     L     +  T +    +       A+   +H
Sbjct: 152 EIMAMIQAENYHAFRLAAENGH-LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH 210

Query: 134 VAITTLVSHTSSLEIP-------NAQGLTPFMLLEENI---GAPWLGKATVDKITELKDH 183
             I  L+     L            + + PF+    N           +  D + +L   
Sbjct: 211 NVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTK 270

Query: 184 YNTQQNI 190
               Q  
Sbjct: 271 SECLQGF 277

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 71.1 bits (173), Expect = 1e-13
 Identities = 22/197 (11%), Positives = 45/197 (22%), Gaps = 19/197 (9%)

Query: 548 LLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTL 607
           L+ W    N   + ++FIS   +        +A  +     +       LL  + A    
Sbjct: 18  LIPWILWEN---LFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNR 74

Query: 608 MDSEGSTCIHQAAQFGHT--------------RIVAYLVAKGINVNLQDRNGMTALMWSA 653
              +  +  H+                       +  L+     V +       A   +A
Sbjct: 75  NAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA 134

Query: 654 YKVFSLDPTRLLITFGASTTIQDK-IHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQ 712
                L     L     +  +         A   A    +   +  L     +      Q
Sbjct: 135 ENGH-LHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQ 193

Query: 713 GLTPFMLLEENIGAPWL 729
               +      +G    
Sbjct: 194 AENYYAFRWAAVGRGHH 210

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 70.7 bits (172), Expect = 1e-13
 Identities = 26/210 (12%), Positives = 51/210 (24%), Gaps = 31/210 (14%)

Query: 530 QFVEAGQDVNEPDSETV--TLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHW 585
           +  E          +         AA N  + ++              I  +        
Sbjct: 144 RLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 203

Query: 586 ATRQGHLDSVVLLIQHGADPTLMDSEGST---------CIHQAAQFGHTRIVAYLVAKGI 636
           A  +GH + +  L+         +                    +         L     
Sbjct: 204 AVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDG 263

Query: 637 NVNLQDRN-------GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH----GNVALH 685
             +L  ++        +  L+    +V  LD  R L++      +          N  L 
Sbjct: 264 VFDLVTKSECLQGFYMLRNLIRRNDEVL-LDDIRFLLSIPGIKALAPTATIPGDANELLR 322

Query: 686 WAIYAKNHVAITTLVSHTSSLEIPNAQGLT 715
            A+    +     L+     L IP+   LT
Sbjct: 323 LALR-LGNQGACALL-----LSIPSVLALT 346

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 70.7 bits (172), Expect = 2e-13
 Identities = 21/183 (11%), Positives = 41/183 (22%), Gaps = 16/183 (8%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE---------- 51
           ++FIS   +        +A  +     +       LL  + A       +          
Sbjct: 29  QHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGI 88

Query: 52  -GSTCIHQAAQFGHTRIVAY---LVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 107
                   AA  G +  +     L+     V +       A   +A     L     L  
Sbjct: 89  KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGH-LHVLNRLCE 147

Query: 108 FGASTTIQDK-IHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGA 166
              +  +         A   A    +   +  L     +      Q    +      +G 
Sbjct: 148 LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR 207

Query: 167 PWL 169
              
Sbjct: 208 GHH 210

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 58.4 bits (140), Expect = 2e-09
 Identities = 22/177 (12%), Positives = 43/177 (24%), Gaps = 29/177 (16%)

Query: 1   MKYFISQGAIVDA--IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST---- 54
           +              I  +        A  +GH + +  L+         +         
Sbjct: 177 LNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEK 236

Query: 55  -----CIHQAAQFGHTRIVAYLVAKGINVNLQDRN-------GMTALMWSAYKVFSLDPT 102
                      +         L       +L  ++        +  L+    +V  LD  
Sbjct: 237 YVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVL-LDDI 295

Query: 103 RLLITFGASTTIQDKIH----GNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLT 155
           R L++      +          N  L  A+    +     L+     L IP+   LT
Sbjct: 296 RFLLSIPGIKALAPTATIPGDANELLRLALR-LGNQGACALL-----LSIPSVLALT 346

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.5 bits (210), Expect = 1e-18
 Identities = 31/211 (14%), Positives = 61/211 (28%), Gaps = 28/211 (13%)

Query: 531 FVEAGQDVNEP-DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ 589
           F     ++N P D    T LHW      +E++K+ +  G+         + + L  A + 
Sbjct: 92  FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE-SCLVKAVKS 150

Query: 590 GHL-------DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV---------- 632
            +          +  L          DS   T +H           +             
Sbjct: 151 VNNYDSGTFEALLDYLYPCLILE---DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGW 207

Query: 633 ---AKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTI--QDKIHGNVALHWA 687
               +   +        +       +        L + +  +  +  QD  +G+  L+ A
Sbjct: 208 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS-NGDTCLNIA 266

Query: 688 IYAKNHVAITTLVSHTSSLEIPNAQGLTPFM 718
               N   +  L+ + +   I N  GL P  
Sbjct: 267 ARLGNISIVDALLDYGADPFIANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.7 bits (195), Expect = 1e-16
 Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 15/134 (11%)

Query: 535 GQDVNEPDSETVTLLHWAAINNRIE------------IMKYFISQGAIVDAIGGDLQATP 582
              +   DS   T+LH   I + +             +M + + +       G + + + 
Sbjct: 167 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 226

Query: 583 LHWATRQGHLDSVVLLIQH---GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 639
            +    +     +  L             DS G TC++ AA+ G+  IV  L+  G +  
Sbjct: 227 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 286

Query: 640 LQDRNGMTALMWSA 653
           + +++G+  + + A
Sbjct: 287 IANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.1 bits (183), Expect = 4e-15
 Identities = 36/231 (15%), Positives = 71/231 (30%), Gaps = 19/231 (8%)

Query: 508 ERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVN-EPDSETVTLLHWAAINNRIEIMKYFIS 566
           +++      +    P              + N E  S      H +  +   E+   F +
Sbjct: 35  QKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 94

Query: 567 QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR 626
               ++    +   TPLHW T   +L+ V  L++HG++    D+ G +C+ +A +  +  
Sbjct: 95  TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY 154

Query: 627 ----IVAYLVAKGINVNLQDRNGMTAL-----------MWSAYKVFSLDPTRLLITFGAS 671
                 A L      + L+D    T L             +A K +       ++     
Sbjct: 155 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR 214

Query: 672 TTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQ---GLTPFML 719
                        +     +    +  L        + NAQ   G T   +
Sbjct: 215 PIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNI 265

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.4 bits (176), Expect = 3e-14
 Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH---GADPTLMDSEGSTCIH 57
           M + + +       G + + +  +    +     +  L             DS G TC++
Sbjct: 205 MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN 264

Query: 58  QAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 93
            AA+ G+  IV  L+  G +  + +++G+  + + A
Sbjct: 265 IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.9 bits (172), Expect = 9e-14
 Identities = 29/157 (18%), Positives = 52/157 (33%), Gaps = 18/157 (11%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR----IVAYLVAKGI 76
           TPLHW T   +L+ V  L++HG++    D+ G +C+ +A +  +        A L     
Sbjct: 109 TPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP 168

Query: 77  NVNLQDRNGMTAL-----------MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALH 125
            + L+D    T L             +A K +       ++                  +
Sbjct: 169 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 228

Query: 126 WAIYAKNHVAITTLVSHTSSLEIPNAQ---GLTPFML 159
                +    +  L        + NAQ   G T   +
Sbjct: 229 DKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNI 265

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.4 bits (137), Expect = 3e-09
 Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 5/136 (3%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTL-MDSEGSTCIHQAA 60
               +  +  ++ GG       H +      +          +  + +D  G+T +H   
Sbjct: 56  TSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLT 115

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRL---LITFGASTTIQDK 117
              +  +V +LV  G N    D  G + L+ +   V + D       L        ++D 
Sbjct: 116 SIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS 175

Query: 118 IHGNVALHWAIYAKNH 133
           ++    LH  I     
Sbjct: 176 MN-RTILHHIIITSGM 190

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.7 bits (125), Expect = 7e-08
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 1/53 (1%)

Query: 534 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWA 586
               +N  DS   T L+ AA    I I+   +  GA            P+ + 
Sbjct: 248 IANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGL-RPVDFG 299

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 80.1 bits (196), Expect = 7e-17
 Identities = 29/198 (14%), Positives = 57/198 (28%), Gaps = 1/198 (0%)

Query: 462 NERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTE 521
           ++ ++  ++         Q  +                    L            E  T 
Sbjct: 83  DDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTP 142

Query: 522 PTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQAT 581
                ++        +VN    +              +  ++  S              T
Sbjct: 143 LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS-GGT 201

Query: 582 PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ 641
            LH A  +G+ + + LLIQ   D  + D +G T +H AA +G       LV    ++   
Sbjct: 202 ALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV 261

Query: 642 DRNGMTALMWSAYKVFSL 659
           ++ G TA   +   +   
Sbjct: 262 NKVGQTAFDVADEDILGY 279

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 75.5 bits (184), Expect = 2e-15
 Identities = 25/99 (25%), Positives = 43/99 (43%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
            + +++ G I D        T LH A  +G+ + + LLIQ   D  + D +G T +H AA
Sbjct: 181 ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA 240

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSL 99
            +G       LV    ++   ++ G TA   +   +   
Sbjct: 241 HWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGY 279

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 63.6 bits (153), Expect = 2e-11
 Identities = 61/249 (24%), Positives = 102/249 (40%), Gaps = 43/249 (17%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            +E G D+N  + + +T LH A I++ ++++K+ +  GA ++    +    PLH A   G
Sbjct: 59  LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE-GWIPLHAAASCG 117

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHT------------------------- 625
           +LD    LI  GA    ++SEG T +  A +                             
Sbjct: 118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM 177

Query: 626 --RIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVA 683
                 +L +  IN     ++G TAL  +A K    +  +LLI       I+D   G   
Sbjct: 178 LRDARQWLNSGHINDVRHAKSGGTALHVAAAK-GYTEVLKLLIQARYDVNIKDY-DGWTP 235

Query: 684 LHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDH 743
           LH A +     A   LV +   +E  N  G T F + +E+I         +  + EL+  
Sbjct: 236 LHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI---------LGYLEELQ-- 284

Query: 744 YNTQQNIIH 752
              +QN++H
Sbjct: 285 --KKQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.7 bits (130), Expect = 1e-08
 Identities = 41/198 (20%), Positives = 69/198 (34%), Gaps = 26/198 (13%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
            +   A  +   E +   + +GA ++    D   T LH A    ++D V  L+++GA+  
Sbjct: 42  AVFLAACSSGDTEEVLRLLERGADINYANVDGL-TALHQACIDDNVDMVKFLVENGANIN 100

Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 666
             D+EG   +H AA  G+  I  YL+++G +V   +  G T L  +  +         + 
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160

Query: 667 TFGASTTIQDK-------------------------IHGNVALHWAIYAKNHVAITTLVS 701
             G       K                           G  ALH A        +  L+ 
Sbjct: 161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ 220

Query: 702 HTSSLEIPNAQGLTPFML 719
               + I +  G TP   
Sbjct: 221 ARYDVNIKDYDGWTPLHA 238

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 2/104 (1%)

Query: 24  HWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDR 83
               R    D+   L     +       G T +H AA  G+T ++  L+    +VN++D 
Sbjct: 171 KEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY 230

Query: 84  NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA 127
           +G T L  +A+     +  R+L+         +K  G  A   A
Sbjct: 231 DGWTPLHAAAHW-GKEEACRILVENLCDMEAVNK-VGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 23/85 (27%), Positives = 36/85 (42%)

Query: 20  ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
                 A   G  + V+ L++ GAD    + +G T +HQA    +  +V +LV  G N+N
Sbjct: 41  GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN 100

Query: 80  LQDRNGMTALMWSAYKVFSLDPTRL 104
             D  G   L  +A   +      L
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYL 125

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 23/85 (27%), Positives = 36/85 (42%)

Query: 580 ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 639
                 A   G  + V+ L++ GAD    + +G T +HQA    +  +V +LV  G N+N
Sbjct: 41  GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN 100

Query: 640 LQDRNGMTALMWSAYKVFSLDPTRL 664
             D  G   L  +A   +      L
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYL 125

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.5 bits (119), Expect = 3e-07
 Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 15/138 (10%)

Query: 55  CIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTI 114
              +  +        +L +  IN     ++G TAL  +A K    +  +LLI       I
Sbjct: 169 ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK-GYTEVLKLLIQARYDVNI 227

Query: 115 QDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATV 174
           +D   G   LH A +     A   LV +   +E  N  G T F + +E+I         +
Sbjct: 228 KDY-DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI---------L 277

Query: 175 DKITELKDHYNTQQNIIH 192
             + EL+     +QN++H
Sbjct: 278 GYLEELQ----KKQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.2 bits (113), Expect = 2e-06
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 51 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 95
          +       A   G T  V  L+ +G ++N  + +G+TAL  +   
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID 83

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.2 bits (113), Expect = 2e-06
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 611 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 655
           +       A   G T  V  L+ +G ++N  + +G+TAL  +   
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID 83

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 39/184 (21%), Positives = 65/184 (35%), Gaps = 26/184 (14%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +   + +GA ++    D   T LH A    ++D V  L+++GA+    D+EG   +H AA
Sbjct: 56  VLRLLERGADINYANVDGL-TALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA 114

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK--- 117
             G+  I  YL+++G +V   +  G T L  +  +         +   G       K   
Sbjct: 115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEE 174

Query: 118 ----------------------IHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLT 155
                                   G  ALH A        +  L+     + I +  G T
Sbjct: 175 RIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWT 234

Query: 156 PFML 159
           P   
Sbjct: 235 PLHA 238

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 72.8 bits (177), Expect = 1e-14
 Identities = 24/103 (23%), Positives = 42/103 (40%)

Query: 529 YQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATR 588
               +     +    +  T LH+AA  + + I+KY + +         +   TP+  A +
Sbjct: 171 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ 230

Query: 589 QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 631
           +G ++ V+ LIQ GA    +D+   T    A    H  IV   
Sbjct: 231 EGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 64.4 bits (155), Expect = 1e-11
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 71
           TP+  A ++G ++ V+ LIQ GA    +D+   T    A    H  IV   
Sbjct: 223 TPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 61.7 bits (148), Expect = 7e-11
 Identities = 33/226 (14%), Positives = 67/226 (29%), Gaps = 18/226 (7%)

Query: 375 NHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILL 434
           N          +L +       +A   K+     + ++ E   +       D  +   +L
Sbjct: 68  NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYML 127

Query: 435 NAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFV 494
           N+      I           ++  M        ++        +      +     ++  
Sbjct: 128 NSTKLKGDIE----ELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE 183

Query: 495 DFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAI 554
            + G +            +              KY   E G + ++ D +  T +  AA 
Sbjct: 184 KYKGRTALHYAAQVSNMPI-------------VKYLVGEKGSNKDKQDEDGKTPIMLAAQ 230

Query: 555 NNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQ 600
             RIE++ Y I QGA V+A+      T    A    H + V +  +
Sbjct: 231 EGRIEVVMYLIQQGASVEAVDATDH-TARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 61.3 bits (147), Expect = 1e-10
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 21  TPLHWATRQGHLDSVVLLIQ-HGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
           T LH+A +  ++  V  L+   G++    D +G T I  AAQ G   +V YL+ +G +V 
Sbjct: 189 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE 248

Query: 80  LQDRNGMTALMWSAYK 95
             D    TA   +   
Sbjct: 249 AVDATDHTARQLAQAN 264

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 61.3 bits (147), Expect = 1e-10
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 581 TPLHWATRQGHLDSVVLLIQ-HGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 639
           T LH+A +  ++  V  L+   G++    D +G T I  AAQ G   +V YL+ +G +V 
Sbjct: 189 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE 248

Query: 640 LQDRNGMTALMWSAYK 655
             D    TA   +   
Sbjct: 249 AVDATDHTARQLAQAN 264

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 58.6 bits (140), Expect = 9e-10
 Identities = 50/244 (20%), Positives = 82/244 (33%), Gaps = 58/244 (23%)

Query: 536 QDVNEPDSET-VTLLHWAAINNRIEIMK--------YFISQGAIVDAIGGDLQATPLHWA 586
           + VN  D     T+LHW A N+  E  +          I+ GA V+A+  D   TPL  A
Sbjct: 23  ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN-TPLMLA 81

Query: 587 TRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI---------- 636
                   V  L++ GADPT+ +    + +HQAA      ++ Y++              
Sbjct: 82  VLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR 141

Query: 637 -------------------------------------NVNLQDRNGMTALMWSAYKVFSL 659
                                                  + +   G TAL ++A      
Sbjct: 142 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMP 201

Query: 660 DPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 719
               L+   G++   QD+  G   +  A        +  L+   +S+E  +A   T   L
Sbjct: 202 IVKYLVGEKGSNKDKQDE-DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL 260

Query: 720 LEEN 723
            + N
Sbjct: 261 AQAN 264

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.8 bits (125), Expect = 7e-08
 Identities = 23/109 (21%), Positives = 32/109 (29%), Gaps = 30/109 (27%)

Query: 544 ETVTLLHWAAINNRIEIMKYFISQGA-IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG 602
           E+   LH  A  +   I +    +   I+D        T LHW       +    LI H 
Sbjct: 1   ESPIKLHTEAAGS-YAITEPITRESVNIIDPRHNR---TVLHWIASNSSAEKSEDLIVHE 56

Query: 603 ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 651
           A                            +A G +VN  D +  T LM 
Sbjct: 57  AK-------------------------ECIAAGADVNAMDCDENTPLML 80

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 48.2 bits (113), Expect = 2e-06
 Identities = 22/154 (14%), Positives = 45/154 (29%), Gaps = 15/154 (9%)

Query: 24  HWATRQGHLDSVVLLIQHGADPTLMD--------------SEGSTCIHQAAQFGHTRIVA 69
           H A        +V ++        ++                       +A+    +   
Sbjct: 112 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK 171

Query: 70  YLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIY 129
                    + +   G TAL ++A          L+   G++   QD+  G   +  A  
Sbjct: 172 VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE-DGKTPIMLAAQ 230

Query: 130 AKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN 163
                 +  L+   +S+E  +A   T   L + N
Sbjct: 231 EGRIEVVMYLIQQGASVEAVDATDHTARQLAQAN 264

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 18/92 (19%), Positives = 25/92 (27%), Gaps = 29/92 (31%)

Query: 1  MKYFISQGA-IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 59
           +    +   I+D        T LHW       +    LI H A                
Sbjct: 17 TEPITRESVNIIDPRHNR---TVLHWIASNSSAEKSEDLIVHEAK--------------- 58

Query: 60 AQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 91
                      +A G +VN  D +  T LM 
Sbjct: 59 ----------ECIAAGADVNAMDCDENTPLML 80

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 10/86 (11%)

Query: 51  EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY-------KVFSLDPTR 103
           E    +H  A  G   I   +  + +N+    R+  T L W A        +   +   +
Sbjct: 1   ESPIKLHTEAA-GSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 104 LLITFGASTTIQDKIHGNVALHWAIY 129
             I  GA     D    N  L  A+ 
Sbjct: 59  ECIAAGADVNAMDC-DENTPLMLAVL 83

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 10/86 (11%)

Query: 611 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY-------KVFSLDPTR 663
           E    +H  A  G   I   +  + +N+    R+  T L W A        +   +   +
Sbjct: 1   ESPIKLHTEAA-GSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 664 LLITFGASTTIQDKIHGNVALHWAIY 689
             I  GA     D    N  L  A+ 
Sbjct: 59  ECIAAGADVNAMDC-DENTPLMLAVL 83

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.1 bits (157), Expect = 4e-12
 Identities = 26/105 (24%), Positives = 42/105 (40%)

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
             +    +   + +  T LH A I+   E+++     GA ++        TPLH A    
Sbjct: 144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ 203

Query: 591 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 635
               + LL++ GADPT     G T +  A    +  +   L A G
Sbjct: 204 AASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.2 bits (152), Expect = 2e-11
 Identities = 26/149 (17%), Positives = 43/149 (28%), Gaps = 2/149 (1%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAI--GGDLQATPLHWATRQGHLDSVVLLIQHGAD 604
           T LH A I+     + + +   A  + +    DL  T LH A   G   +V  L   GA 
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70

Query: 605 PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRL 664
             + +  G T +H A +         L+    +      +             S  P  +
Sbjct: 71  VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130

Query: 665 LITFGASTTIQDKIHGNVALHWAIYAKNH 693
                     + +         A     H
Sbjct: 131 DSQPNPENEEEPRDEDWRLQLEAENYDGH 159

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.7 bits (143), Expect = 2e-10
 Identities = 31/213 (14%), Positives = 55/213 (25%), Gaps = 49/213 (23%)

Query: 537 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 596
            ++  +    T LH AAI      ++   + GA V         T LH A R        
Sbjct: 37  YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG-GHTALHLACRVRAHTCAC 95

Query: 597 LLIQHGADPTLMDSEG--------------STCIHQAAQFGHTRIVAYLVAKGINVNLQD 642
           +L+Q         S+               +     +                + +  ++
Sbjct: 96  VLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN 155

Query: 643 RNGMTALMWSAY---------------------------------KVFSLDPTRLLITFG 669
            +G T L  +                                   +  +     LL+  G
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215

Query: 670 ASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 702
           A  T +    G   L  A+   N +    L +H
Sbjct: 216 ADPTARMY-GGRTPLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.9 bits (141), Expect = 4e-10
 Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 1/130 (0%)

Query: 541 PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQ 600
           PD+        +  N   E           ++A   D           +      +L   
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180

Query: 601 HGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLD 660
                    + G T +H A +     ++  L+  G +   +   G T L  +  +  +  
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR-PNPI 239

Query: 661 PTRLLITFGA 670
             RLL   GA
Sbjct: 240 LARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 18/55 (32%), Positives = 24/55 (43%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 75
           TPLH A        + LL++ GADPT     G T +  A    +  +   L A G
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 34/154 (22%), Positives = 48/154 (31%), Gaps = 17/154 (11%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLM---DSEGSTCIHQAAQFGHTRIVAYLVAKGIN 77
           T LH A    H   +  L+   A    +   +  G T +H AA  G    V  L A G  
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70

Query: 78  VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK---------IHGNVALHWAI 128
           V + +R G TAL   A +V +     +L+    S                  + +   A 
Sbjct: 71  VLVAERGGHTALHL-ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129

Query: 129 YA----KNHVAITTLVSHTSSLEIPNAQGLTPFM 158
                   +            LE  N  G TP  
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH 163

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 34/154 (22%), Positives = 48/154 (31%), Gaps = 17/154 (11%)

Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLM---DSEGSTCIHQAAQFGHTRIVAYLVAKGIN 637
           T LH A    H   +  L+   A    +   +  G T +H AA  G    V  L A G  
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70

Query: 638 VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK---------IHGNVALHWAI 688
           V + +R G TAL   A +V +     +L+    S                  + +   A 
Sbjct: 71  VLVAERGGHTALHL-ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129

Query: 689 YA----KNHVAITTLVSHTSSLEIPNAQGLTPFM 718
                   +            LE  N  G TP  
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH 163

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.8 bits (125), Expect = 5e-08
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD 604
           T LH A       +++  +  GA   A     + TPL  A  + +     LL  HGA 
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGR-TPLGSALLRPNPILARLLRAHGAP 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 5/111 (4%)

Query: 49  DSEGSTCIHQAAQFGHTRIVAYLVAKGIN---VNLQDRNGMTALMWSAYKVFSLDPTRLL 105
             +G T +H A    H   + +L+        ++LQ+  G TAL  +A    +    +L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 106 ITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 156
                    +   H  +  H A   + H     L+    S     +     
Sbjct: 66  AAGAGVLVAERGGHTAL--HLACRVRAHTCACVLLQPRPSHPRDASDTYLT 114

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 5/111 (4%)

Query: 609 DSEGSTCIHQAAQFGHTRIVAYLVAKGIN---VNLQDRNGMTALMWSAYKVFSLDPTRLL 665
             +G T +H A    H   + +L+        ++LQ+  G TAL  +A    +    +L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 666 ITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 716
                    +   H  +  H A   + H     L+    S     +     
Sbjct: 66  AAGAGVLVAERGGHTAL--HLACRVRAHTCACVLLQPRPSHPRDASDTYLT 114

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 1/110 (0%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
                     ++A   D           +      +L            + G T +H A 
Sbjct: 141 EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV 200

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
           +     ++  L+  G +   +   G T L  +  +  +    RLL   GA
Sbjct: 201 EAQAASVLELLLKAGADPTARMYGGRTPLGSALLR-PNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.7 bits (117), Expect = 5e-07
 Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 1/134 (0%)

Query: 9   AIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 68
              D       A     +      +               + +G T +H A       +V
Sbjct: 115 QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMV 174

Query: 69  AYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI 128
             L   G ++N  +       +  A +  +     LL+  GA  T +    G   L  A+
Sbjct: 175 RLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMY-GGRTPLGSAL 233

Query: 129 YAKNHVAITTLVSH 142
              N +    L +H
Sbjct: 234 LRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD 44
           ++  +  GA   A     + TPL  A  + +     LL  HGA 
Sbjct: 208 LELLLKAGADPTARMYGGR-TPLGSALLRPNPILARLLRAHGAP 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 19/194 (9%), Positives = 39/194 (20%), Gaps = 5/194 (2%)

Query: 381 GYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHA 440
           G  S++  +       +           L+           +LQ          + ++  
Sbjct: 56  GEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115

Query: 441 IW-ITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGW 499
               T   S     + S     NE    +         +           + +       
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR 175

Query: 500 SCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVE----AGQDVNEPDSETVTLLHWAAIN 555
                                     +     +E    AG D         T L  A + 
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR 235

Query: 556 NRIEIMKYFISQGA 569
               + +   + GA
Sbjct: 236 PNPILARLLRAHGA 249

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (146), Expect = 5e-11
 Identities = 32/187 (17%), Positives = 55/187 (29%), Gaps = 5/187 (2%)

Query: 451 LYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERI 510
           + Q+       N + N  +    +A    Q              +   +           
Sbjct: 22  IRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE 81

Query: 511 DWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI 570
                                      +   +    T LH A+I+  + I++  +S GA 
Sbjct: 82  QGCLASVGVLT-----QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD 136

Query: 571 VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAY 630
           V+A       T LH A    + D V LL++ GAD   +  +G +          TRI   
Sbjct: 137 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQ 196

Query: 631 LVAKGIN 637
           L    + 
Sbjct: 197 LGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (131), Expect = 5e-09
 Identities = 45/186 (24%), Positives = 72/186 (38%), Gaps = 10/186 (5%)

Query: 547 TLLHWAAINNRI----EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG 602
           + LH A I+       E+++      A ++      Q TPLH A      +    L+  G
Sbjct: 4   SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL-QQTPLHLAVITNQPEIAEALLGAG 62

Query: 603 ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA-----LMWSAYKVF 657
            DP L D  G+T +H A + G    V  L       +L      T       +  A    
Sbjct: 63  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 122

Query: 658 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPF 717
            L    LL++ GA    Q+  +G  ALH A+  +N   ++ L+   + +     QG +P+
Sbjct: 123 YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPY 182

Query: 718 MLLEEN 723
            L    
Sbjct: 183 QLTWGR 188

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 1e-08
 Identities = 21/77 (27%), Positives = 32/77 (41%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           ++  +S GA V+A       T LH A    + D V LL++ GAD   +  +G +      
Sbjct: 127 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW 186

Query: 61  QFGHTRIVAYLVAKGIN 77
               TRI   L    + 
Sbjct: 187 GRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 6e-06
 Identities = 27/185 (14%), Positives = 51/185 (27%), Gaps = 42/185 (22%)

Query: 21  TPLHWATRQGHLDSVVLLIQ----HGADPTLMDSEGSTCIHQAAQFGHTRIV-------- 68
           + LH A         + +I+      A     ++   T +H A       I         
Sbjct: 4   SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC 63

Query: 69  ------------------------------AYLVAKGINVNLQDRNGMTALMWSAYKVFS 98
                                         +       ++           +  A     
Sbjct: 64  DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 123

Query: 99  LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFM 158
           L    LL++ GA    Q+  +G  ALH A+  +N   ++ L+   + +     QG +P+ 
Sbjct: 124 LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ 183

Query: 159 LLEEN 163
           L    
Sbjct: 184 LTWGR 188

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 2e-05
 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 1/65 (1%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
           T LH A      +++   +  GA V+ +      +P      +        L Q   +  
Sbjct: 147 TALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY-SPYQLTWGRPSTRIQQQLGQLTLENL 205

Query: 607 LMDSE 611
            M  E
Sbjct: 206 QMLPE 210

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 4/45 (8%)

Query: 51 EGSTCIHQAAQFGHTRIVAYLV----AKGINVNLQDRNGMTALMW 91
          +G + +H A       +   ++         +N Q+    T L  
Sbjct: 1  DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHL 45

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 4/45 (8%)

Query: 611 EGSTCIHQAAQFGHTRIVAYLV----AKGINVNLQDRNGMTALMW 651
           +G + +H A       +   ++         +N Q+    T L  
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHL 45

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 5e-05
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 22  PLHWATRQGHLDSVVLLIQHGADP-TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
            LH A+  G+L  V LL+  GAD        G T +H A    +  +V+ L+  G +VN 
Sbjct: 114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 173

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGAS 111
               G +    +  +  S    + L      
Sbjct: 174 VTYQGYSPYQLTWGR-PSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 5e-05
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 582 PLHWATRQGHLDSVVLLIQHGADP-TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
            LH A+  G+L  V LL+  GAD        G T +H A    +  +V+ L+  G +VN 
Sbjct: 114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 173

Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGAS 671
               G +    +  +  S    + L      
Sbjct: 174 VTYQGYSPYQLTWGR-PSTRIQQQLGQLTLE 203

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 60.6 bits (145), Expect = 7e-11
 Identities = 32/167 (19%), Positives = 53/167 (31%), Gaps = 1/167 (0%)

Query: 465 MNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTS 524
           ++A    +   N     +                 +          D      +      
Sbjct: 43  LDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAI 102

Query: 525 LSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLH 584
                  + A  D+N  D+   T LHWAA  N  E +   +   A  DA     + TPL 
Sbjct: 103 EGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDE-TPLF 161

Query: 585 WATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 631
            A R+G  ++   L+ + A+  + D         A++  H  IV  L
Sbjct: 162 LAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 56.7 bits (135), Expect = 1e-09
 Identities = 35/194 (18%), Positives = 66/194 (34%), Gaps = 3/194 (1%)

Query: 531 FVEAGQDVNE-PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ 589
            +  G ++N   D    T LH AA   R +  K  +  GA  ++     +          
Sbjct: 8   LLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAAD 67

Query: 590 GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 649
                 +LL     +      +G+T +  AA+     +V  L+    ++N  D +G TAL
Sbjct: 68  AMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTAL 127

Query: 650 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIP 709
            W      +      ++    +            L  A    ++ A   L+ + ++ EI 
Sbjct: 128 HW--AAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREIT 185

Query: 710 NAQGLTPFMLLEEN 723
           +     P  +  E 
Sbjct: 186 DHMDRLPRDVASER 199

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.2 bits (118), Expect = 3e-07
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 71
           TPL  A R+G  ++   L+ + A+  + D         A++  H  IV  L
Sbjct: 158 TPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.4 bits (116), Expect = 4e-07
 Identities = 25/164 (15%), Positives = 54/164 (32%), Gaps = 1/164 (0%)

Query: 492 NFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHW 551
           +       +       +       +           +        ++N    +  T L  
Sbjct: 37  DAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLIL 96

Query: 552 AAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE 611
           AA      +++  I+  A ++A     + T LHWA    + ++V +L+ H A+    D +
Sbjct: 97  AARLAIEGMVEDLITADADINAADNSGK-TALHWAAAVNNTEAVNILLMHHANRDAQDDK 155

Query: 612 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 655
             T +  AA+ G       L+    N  + D         ++ +
Sbjct: 156 DETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASER 199

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.0 bits (115), Expect = 5e-07
 Identities = 35/197 (17%), Positives = 61/197 (30%), Gaps = 36/197 (18%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           +   ++QGA ++A       T LH A R    D+   L+  GAD    D+ G T +H A 
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 64

Query: 61  QFGHTRIVAY----------------------------------LVAKGINVNLQDRNGM 86
                 +                                     L+    ++N  D +G 
Sbjct: 65  AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGK 124

Query: 87  TALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSL 146
           TAL W      +      ++    +            L  A    ++ A   L+ + ++ 
Sbjct: 125 TALHW--AAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR 182

Query: 147 EIPNAQGLTPFMLLEEN 163
           EI +     P  +  E 
Sbjct: 183 EITDHMDRLPRDVASER 199

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 3/119 (2%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
           TPL  A R      V  LI   AD    D+ G T +H AA   +T  V  L+    N + 
Sbjct: 92  TPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDA 151

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL 139
           QD    T L  +  +  S + ++ L+   A+  I D     +    A   + H  I  L
Sbjct: 152 QDDKDETPLFLA-AREGSYEASKALLDNFANREITDH-MDRLPRDVASE-RLHHDIVRL 207

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 7e-04
 Identities = 10/190 (5%), Positives = 33/190 (17%), Gaps = 15/190 (7%)

Query: 374 KNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFIL 433
                    +                   +          +++                 
Sbjct: 33  FARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTT 92

Query: 434 LNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNF 493
                  + I  ++   +     +    N    A  +   + N              ++ 
Sbjct: 93  PLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAV-NNTEAVNILLMHHANRDA 151

Query: 494 VDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAA 553
            D    +   L   E      +                ++   +    D         A+
Sbjct: 152 QDDKDETPLFLAAREGSYEASKA--------------LLDNFANREITDHMDRLPRDVAS 197

Query: 554 INNRIEIMKY 563
                +I++ 
Sbjct: 198 ERLHHDIVRL 207

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 1e-10
 Identities = 26/182 (14%), Positives = 51/182 (28%), Gaps = 1/182 (0%)

Query: 447 LSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFK 506
           L+        + +      +                       L+  +D        L  
Sbjct: 46  LAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA 105

Query: 507 PERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFIS 566
                    +         + +                  + L  A  NN + +++  + 
Sbjct: 106 RNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ 165

Query: 567 QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR 626
            GA V+A       + LH A+ +G L  V  L++ GAD +L +    T +  A       
Sbjct: 166 HGANVNAQMYSGS-SALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVID 224

Query: 627 IV 628
           I+
Sbjct: 225 IL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 5e-10
 Identities = 33/109 (30%), Positives = 53/109 (48%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
           T LH A      E ++  + +GA +DA+      +PL  A     L  V LL+QHGA+  
Sbjct: 112 TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN 171

Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 655
                GS+ +H A+  G   +V  LV  G + +L++ +  T LM +  +
Sbjct: 172 AQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR 220

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 6e-09
 Identities = 28/95 (29%), Positives = 48/95 (50%)

Query: 1   MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 60
           ++  + +GA +DA+      +PL  A     L  V LL+QHGA+       GS+ +H A+
Sbjct: 126 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 185

Query: 61  QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 95
             G   +V  LV  G + +L++ +  T LM +  +
Sbjct: 186 GRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR 220

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 1e-07
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 22  PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 68
            LH A+ +G L  V  L++ GAD +L +    T +  A       I+
Sbjct: 180 ALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 6/198 (3%)

Query: 530 QFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ 589
            F + G++++  ++   T LH A I     +++  ++ GA   A+    Q    H A   
Sbjct: 25  LFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA-HLACEH 83

Query: 590 GHLDSVVLLIQHGADPTLMDS----EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 645
                +  L+   A  TL       +G T +H A        V  L+ +G +++  D   
Sbjct: 84  RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKS 143

Query: 646 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 705
             + +  A +  SL   +LL+  G +        G+ ALH A        + TLV   + 
Sbjct: 144 GRSPLIHAVENNSLSMVQLLLQHG-ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD 202

Query: 706 LEIPNAQGLTPFMLLEEN 723
             + N    TP M+    
Sbjct: 203 SSLKNCHNDTPLMVARSR 220

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 7e-06
 Identities = 20/185 (10%), Positives = 44/185 (23%), Gaps = 9/185 (4%)

Query: 411 HEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRY 470
               V+ ++         +      A   A         +     +   T +        
Sbjct: 51  TLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 110

Query: 471 HHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQ 530
              +            +  L+   D           P             +         
Sbjct: 111 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ--------L 162

Query: 531 FVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 590
            ++ G +VN       + LH A+    + +++  +  GA           TPL  A  + 
Sbjct: 163 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND-TPLMVARSRR 221

Query: 591 HLDSV 595
            +D +
Sbjct: 222 VIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 28/117 (23%), Positives = 42/117 (35%), Gaps = 5/117 (4%)

Query: 21  TPLHWATRQGHLDSVVLLI----QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI 76
           TPLH A  QG+L +V  L+    Q G +  + ++   T +H A       +V  LV  G 
Sbjct: 5   TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 64

Query: 77  NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH 133
           +               A +  S    R L+   A  T+  +      L     A N 
Sbjct: 65  SPM-ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 120

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 28/117 (23%), Positives = 42/117 (35%), Gaps = 5/117 (4%)

Query: 581 TPLHWATRQGHLDSVVLLI----QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI 636
           TPLH A  QG+L +V  L+    Q G +  + ++   T +H A       +V  LV  G 
Sbjct: 5   TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 64

Query: 637 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH 693
           +               A +  S    R L+   A  T+  +      L     A N 
Sbjct: 65  SPM-ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 120

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 51 EGSTCIHQAAQFGHTRIVAYLV----AKGINVNLQDRNGMTALMWSAYK 95
          +G T +H A   G+   V  LV      G  +++ +    T L  +   
Sbjct: 2  DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT 50

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 611 EGSTCIHQAAQFGHTRIVAYLV----AKGINVNLQDRNGMTALMWSAYK 655
           +G T +H A   G+   V  LV      G  +++ +    T L  +   
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT 50

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 4/117 (3%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDS-EGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
           T LH A      ++V LL++ GAD   +D   G + +  A +     +V  L+  G NVN
Sbjct: 112 TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN 171

Query: 80  LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 136
            Q  +G +AL  ++ +   L   R L+  GA +++++  H +  L  A   +  + I
Sbjct: 172 AQMYSGSSALHSASGR-GLLPLVRTLVRSGADSSLKNC-HNDTPLMVARS-RRVIDI 225

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.1 bits (139), Expect = 2e-10
 Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 12/155 (7%)

Query: 542 DSETVTLLHWAAINNRIEIMKYFISQGAIVDA-----IGGDLQATPLHWATR---QGHLD 593
            +  +  L  A     I  +    + G  +        G +   T LH A R   +  L 
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 594 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 653
            V  L+Q+  +      +GST +H      +   +  L+    ++ + + +G T L  + 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 654 YKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI 688
                     LL    +    +   H +V   W +
Sbjct: 123 RL-KHEHCEELLTQALSG---RFNSHVHVEYEWRL 153

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 2e-07
 Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 12/136 (8%)

Query: 1   MKYFISQGAIVDA-----IGGDLQATPLHWATR---QGHLDSVVLLIQHGADPTLMDSEG 52
           +    + G  +        G +   T LH A R   +  L  V  L+Q+  +      +G
Sbjct: 22  LLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKG 81

Query: 53  STCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAST 112
           ST +H      +   +  L+    ++ + + +G T L  +           LL    +  
Sbjct: 82  STALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL-KHEHCEELLTQALSG- 139

Query: 113 TIQDKIHGNVALHWAI 128
             +   H +V   W +
Sbjct: 140 --RFNSHVHVEYEWRL 153

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 5e-09
 Identities = 31/192 (16%), Positives = 61/192 (31%), Gaps = 4/192 (2%)

Query: 447 LSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFK 506
            S             ++  N N   +   +    F      G L+               
Sbjct: 40  WSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN 99

Query: 507 PERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFIS 566
                 +    +             +E G  V   D      LH AA    +++++    
Sbjct: 100 KITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 159

Query: 567 QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLI-QHGADPTLMDSEGSTCIHQAAQFGHT 625
            G            TPL  A  +GH D+ VLL+ ++GA+  L+D++G+     A    + 
Sbjct: 160 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NE 216

Query: 626 RIVAYLVAKGIN 637
           ++  + +   ++
Sbjct: 217 QVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 3e-08
 Identities = 28/209 (13%), Positives = 57/209 (27%), Gaps = 38/209 (18%)

Query: 549 LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM 608
           LH A + N    ++  +     +          PLHW+      +    L+    +  L 
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 63

Query: 609 DSEG--------------------------------------STCIHQAAQFGHTRIVAY 630
           D                                          TC+H A       +  +
Sbjct: 64  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 123

Query: 631 LVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYA 690
           L+  G +V ++D+     L  +A          L     ++   QDK       H     
Sbjct: 124 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 183

Query: 691 KNHVAITTLVSHTSSLEIPNAQGLTPFML 719
               A+  +  + +  ++ + +G     +
Sbjct: 184 HGDAAVLLVEKYGAEYDLVDNKGAKAEDV 212

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 4e-08
 Identities = 25/152 (16%), Positives = 44/152 (28%), Gaps = 4/152 (2%)

Query: 21  TPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 79
            PLH A  +     V  LL    +     D +G   +H +  F    I ++L++K  NVN
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 80  LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI--- 136
           L D    +            +   +   +            N  +     A         
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 137 TTLVSHTSSLEIPNAQGLTPFMLLEENIGAPW 168
             L+ + +S+ I +     P            
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKL 153

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 4e-08
 Identities = 25/152 (16%), Positives = 44/152 (28%), Gaps = 4/152 (2%)

Query: 581 TPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 639
            PLH A  +     V  LL    +     D +G   +H +  F    I ++L++K  NVN
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 640 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI--- 696
           L D    +            +   +   +            N  +     A         
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 697 TTLVSHTSSLEIPNAQGLTPFMLLEENIGAPW 728
             L+ + +S+ I +     P            
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKL 153

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 6e-06
 Identities = 33/126 (26%), Positives = 44/126 (34%), Gaps = 7/126 (5%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
           T LH A      E+ ++ I  GA V       Q  PLH A   G L  + LL   G    
Sbjct: 107 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQ-IPLHRAASVGSLKLIELLCGLGKSAV 165

Query: 607 LM-DSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAYKVFSLDPTRL 664
              D +G T +  A   GH      LV K G   +L D  G  A   +  +       + 
Sbjct: 166 NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE----QVKKF 221

Query: 665 LITFGA 670
            +    
Sbjct: 222 FLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 6e-06
 Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 6/92 (6%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLM-DSEGSTCIHQAAQFGHTRIVAYLVAK-GINV 78
            PLH A   G L  + LL   G       D +G T +  A   GH      LV K G   
Sbjct: 140 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY 199

Query: 79  NLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 110
           +L D  G  A   +  +       +  +    
Sbjct: 200 DLVDNKGAKAEDVALNE----QVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 21  TPLHWATRQGHLDSVVLLI-QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 77
           TPL  A  +GH D+ VLL+ ++GA+  L+D++G+     A    + ++  + +   ++
Sbjct: 174 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 26/196 (13%), Positives = 58/196 (29%), Gaps = 39/196 (19%)

Query: 2   KYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM------------- 48
           +   S+ +++     D +  PLHW+      +    L+    +  L              
Sbjct: 18  ELLHSKPSLLLQKDQDGR-IPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHI 76

Query: 49  -------------------------DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDR 83
                                     ++G TC+H A       +  +L+  G +V ++D+
Sbjct: 77  ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 136

Query: 84  NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT 143
                L  +A          L     ++   QDK       H         A+  +  + 
Sbjct: 137 FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG 196

Query: 144 SSLEIPNAQGLTPFML 159
           +  ++ + +G     +
Sbjct: 197 AEYDLVDNKGAKAEDV 212

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 5/127 (3%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 606
            LL  +++    ++++  I +         +   T LH A   GH + V  L+Q G +  
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDE-GITALHNAVCAGHTEIVKFLVQFGVNVN 61

Query: 607 LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGM---TALMWSAYKVFSLDPTR 663
             DS+G T +H AA   + ++  +LV  G  V     + M           + +    ++
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGY-TQCSQ 120

Query: 664 LLITFGA 670
            L     
Sbjct: 121 FLYGVQE 127

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 3e-06
 Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
             L  ++ +G  D V  +I    DP+L + EG T +H A   GHT IV +LV  G+NVN 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN-HVAITTL 139
            D +G T L  +A         + L+  GA+           A       +  +   +  
Sbjct: 63  ADSDGWTPLHCAASCNNV-QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 3e-06
 Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
             L  ++ +G  D V  +I    DP+L + EG T +H A   GHT IV +LV  G+NVN 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN-HVAITTL 699
            D +G T L  +A         + L+  GA+           A       +  +   +  
Sbjct: 63  ADSDGWTPLHCAASCNNV-QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.2 bits (105), Expect = 5e-06
 Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 3/143 (2%)

Query: 21  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 80
             L  A R G  D V +L+ +GA  T  D  G++ +H AAQ+GH      L+  G++ + 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 81  QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 140
           + +   T                 ++    +      +    ALHWA    +   +  L+
Sbjct: 63  RTKVDRT--PLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120

Query: 141 SHTSSLEIPNAQGLTPFMLLEEN 163
            + + +   +    T F +  +N
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDN 143

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.2 bits (105), Expect = 5e-06
 Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 3/143 (2%)

Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 640
             L  A R G  D V +L+ +GA  T  D  G++ +H AAQ+GH      L+  G++ + 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 700
           + +   T                 ++    +      +    ALHWA    +   +  L+
Sbjct: 63  RTKVDRT--PLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120

Query: 701 SHTSSLEIPNAQGLTPFMLLEEN 723
            + + +   +    T F +  +N
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDN 143

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 31/140 (22%)

Query: 547 TLLHWAAINNRIEIMKYFISQGAIVDAIG------------------------------- 575
             L  AA   + + ++  ++ GA                                     
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 576 GDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 635
             +  TPLH A  +GH + V +L++HGAD    D    T +H A +  H  +V  L+  G
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 636 INVNLQDRNGMTALMWSAYK 655
            +V+ Q +   TA   S   
Sbjct: 124 ADVHTQSKFCKTAFDISIDN 143

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 16/49 (32%), Positives = 22/49 (44%)

Query: 23  LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 71
           LHWAT   H + V LLI++GAD         T    +   G+  +   L
Sbjct: 104 LHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 16/49 (32%), Positives = 22/49 (44%)

Query: 583 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 631
           LHWAT   H + V LLI++GAD         T    +   G+  +   L
Sbjct: 104 LHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 30/155 (19%), Positives = 59/155 (38%), Gaps = 6/155 (3%)

Query: 549 LHWAAINNRIEIMKYFI-SQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTL 607
           L  AA    ++ ++  +  +    DA+  +            G     + L++ GA P +
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDAL--NRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 608 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 667
            D+ G++ +H AA+ G    +  LV  G +VN+ D  G   +  +  +  +   + L   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

Query: 668 FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 702
             +    +D   G   L  A+       +  L  H
Sbjct: 124 --SDLHRRDA-RGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 23/155 (14%), Positives = 41/155 (26%), Gaps = 36/155 (23%)

Query: 21  TPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAY--------- 70
             L  A  +G +  V  LL +    P  ++  G T +           +           
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 71  -----------------------LVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 107
                                  LV  G +VN+ D  G   +  +  +  +   + L   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

Query: 108 FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 142
             +    +D   G   L  A+       +  L  H
Sbjct: 124 --SDLHRRDA-RGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 23/105 (21%), Positives = 34/105 (32%), Gaps = 6/105 (5%)

Query: 499 WSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRI 558
                    +                L      VE G DVN PD      +H A      
Sbjct: 55  LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT 114

Query: 559 EIMKYFISQGAI--VDAIGGDLQATPLHWATRQGHLDSVVLLIQH 601
            ++ +  ++  +   DA G     TPL  A ++G  D V +L  H
Sbjct: 115 AVVSFLAAESDLHRRDARG----LTPLELALQRGAQDLVDILQGH 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 3/154 (1%)

Query: 549 LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM 608
           L  AA    +E +   +     V+A  G  +            +   +  +  GA+P L 
Sbjct: 5   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRL--LLRGANPDLK 62

Query: 609 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 668
           D  G   IH AA+ G    +  L+    +VN++D  G   L  +A +        L+   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 669 GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 702
            ++   ++   G+ A   A     +  ++ + ++
Sbjct: 123 ASNVGHRNH-KGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 4e-04
 Identities = 8/44 (18%), Positives = 16/44 (36%)

Query: 21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH 64
            L  A  +G L+ +  L+Q+  +    +  G T +        
Sbjct: 3  NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP 46

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 4e-04
 Identities = 8/44 (18%), Positives = 16/44 (36%)

Query: 581 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH 624
             L  A  +G L+ +  L+Q+  +    +  G T +        
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	923
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.82

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-49  Score=442.25  Aligned_cols=375  Identities=26%  Similarity=0.338  Sum_probs=343.4

Q ss_pred             ccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCC
Q psy3899          20 ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSL   99 (923)
Q Consensus        20 ~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~   99 (923)
                      .||||+||+.|+.++|+.|+++|+++|.+|.+|+||||+|+..|+.++|++|+++|++++.+|.+|.||||+|+..| ..
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g-~~   79 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIG-HT   79 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHT-CH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcC-CH
Confidence            49999999999999999999999999999999999999999999999999999999999999999999999999999 49


Q ss_pred             chhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899         100 DPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  179 (923)
Q Consensus       100 ~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~  179 (923)
                      +++++|++.+.++..... ...+++..+...+...........+...+..+..|.++++.|...++.+     +++.|++
T Consensus        80 ~~~~~Ll~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~-----~v~~ll~  153 (408)
T d1n11a_          80 NMVKLLLENNANPNLATT-AGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR-----VAELLLE  153 (408)
T ss_dssp             HHHHHHHHHTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH-----HHHHHHH
T ss_pred             HHHHHHHHhhhccccccc-cccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHH-----HHHHHHH
Confidence            999999999999988887 8899999999999999999999999988999999999999999999888     7777765


Q ss_pred             HHhhhhhhhhhHhhhcccchhhhhHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhccccccccccchh
Q psy3899         180 LKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLP  259 (923)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (923)
                      ...                                                                             
T Consensus       154 ~~~-----------------------------------------------------------------------------  156 (408)
T d1n11a_         154 RDA-----------------------------------------------------------------------------  156 (408)
T ss_dssp             TTC-----------------------------------------------------------------------------
T ss_pred             cCC-----------------------------------------------------------------------------
Confidence            000                                                                             


Q ss_pred             hhhhhHHHhhhhHHHhhhhhhhHHHHHhhhhhhhHHHHhhhhhccCCCccccCChhhHHHHHHHHHhcCCCCCCcccccc
Q psy3899         260 VYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTC  339 (923)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  339 (923)
                                                                    ++..                              
T Consensus       157 ----------------------------------------------~~~~------------------------------  160 (408)
T d1n11a_         157 ----------------------------------------------HPNA------------------------------  160 (408)
T ss_dssp             ----------------------------------------------CTTC------------------------------
T ss_pred             ----------------------------------------------CCCc------------------------------
Confidence                                                          0000                              


Q ss_pred             ccccCCcCcCccchhhHhhccCCCCccccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHH
Q psy3899         340 LVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVV  419 (923)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~l  419 (923)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (408)
T d1n11a_         161 --------------------------------------------------------------------------------  160 (408)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhccccccccCCCCCCCCcccccccccccccccc
Q psy3899         420 WDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGW  499 (923)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  499 (923)
                                                                               ....+.+||+.|+..+.      
T Consensus       161 ---------------------------------------------------------~~~~~~~~L~~A~~~~~------  177 (408)
T d1n11a_         161 ---------------------------------------------------------AGKNGLTPLHVAVHHNN------  177 (408)
T ss_dssp             ---------------------------------------------------------CCSSCCCHHHHHHHTTC------
T ss_pred             ---------------------------------------------------------CCCcCchHHHHHHHcCC------
Confidence                                                                     01224577777776554      


Q ss_pred             ccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCC
Q psy3899         500 SCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQ  579 (923)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g  579 (923)
                                               .+.++.|+.+|++++..+..|.||||.++...+.+....++..+......... |
T Consensus       178 -------------------------~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~  231 (408)
T d1n11a_         178 -------------------------LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ-G  231 (408)
T ss_dssp             -------------------------HHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-C
T ss_pred             -------------------------HHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCC-C
Confidence                                     67888999999999999999999999999999999999999988877765544 8


Q ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCc
Q psy3899         580 ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSL  659 (923)
Q Consensus       580 ~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~  659 (923)
                      .||||+|+..++.++++.+++.+.+.+..|..|.|||+.|++.++.+++++|+++|++++..+..+.||||.++..+ ..
T Consensus       232 ~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~-~~  310 (408)
T d1n11a_         232 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYG-NI  310 (408)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSS-CS
T ss_pred             CCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccC-cc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888 88


Q ss_pred             chHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhccC
Q psy3899         660 DPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIG  725 (923)
Q Consensus       660 ~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~~~  725 (923)
                      ++++.+++.|++++.+|. .|+||||+|+++|+.++|++|+++|||++.+|.+|+||||+|+++++
T Consensus       311 ~~~~~ll~~g~~in~~d~-~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~  375 (408)
T d1n11a_         311 KLVKFLLQHQADVNAKTK-LGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY  375 (408)
T ss_dssp             HHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTC
T ss_pred             eeeeeeccccccccccCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            999999999999999998 99999999999999999999999999999999999999999999865

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-46  Score=423.62  Aligned_cols=379  Identities=25%  Similarity=0.304  Sum_probs=332.0

Q ss_pred             CccccccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccc
Q psy3899           1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL   80 (923)
Q Consensus         1 v~~Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~   80 (923)
                      |++|+++|+++|.+|.. |+||||+||..|+.++|++||++|++++.+|.+|+||||+|+..|+.+++++|++.+.+...
T Consensus        16 v~~Ll~~g~~in~~d~~-g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~   94 (408)
T d1n11a_          16 VKNLLQRGASPNVSNVK-VETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL   94 (408)
T ss_dssp             HHHHHHTTCCSCCSSSC-CCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred             HHHHHHCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcccc
Confidence            57899999999999876 99999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHH
Q psy3899          81 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLL  160 (923)
Q Consensus        81 ~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A  160 (923)
                      ......+++..+...+ ...........+...+..+. .+.++|+.|+..|+.++|+.|+++|++++..+..|.+|||+|
T Consensus        95 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A  172 (408)
T d1n11a_          95 ATTAGHTPLHIAAREG-HVETVLALLEKEASQACMTK-KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVA  172 (408)
T ss_dssp             CCTTCCCHHHHHHHHT-CHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHH
T ss_pred             ccccccchhhhhhhhc-cccccccccccccccccccc-ccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHH
Confidence            9999999999999888 47777778888999999988 999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCchhhhhHHHHHHhhhhhhhhhHhhhcccchhhhhHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy3899         161 EENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVM  240 (923)
Q Consensus       161 ~~~g~~~~~~~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (923)
                      +..|+.+     ++++|++.   +.                                                       
T Consensus       173 ~~~~~~~-----~~~~Ll~~---g~-------------------------------------------------------  189 (408)
T d1n11a_         173 VHHNNLD-----IVKLLLPR---GG-------------------------------------------------------  189 (408)
T ss_dssp             HHTTCHH-----HHHHHGGG---TC-------------------------------------------------------
T ss_pred             HHcCCHH-----HHHHHHhc---CC-------------------------------------------------------
Confidence            9999988     88877650   00                                                       


Q ss_pred             HHhhhhccccccccccchhhhhhhHHHhhhhHHHhhhhhhhHHHHHhhhhhhhHHHHhhhhhccCCCccccCChhhHHHH
Q psy3899         241 QVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRY  320 (923)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (923)
                                                                                       ++.            
T Consensus       190 -----------------------------------------------------------------~~~------------  192 (408)
T d1n11a_         190 -----------------------------------------------------------------SPH------------  192 (408)
T ss_dssp             -----------------------------------------------------------------CSC------------
T ss_pred             -----------------------------------------------------------------ccc------------
Confidence                                                                             000            


Q ss_pred             HHHHHhcCCCCCCccccccccccCCcCcCccchhhHhhccCCCCccccccccCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3899         321 IIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKY  400 (923)
Q Consensus       321 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  400 (923)
                                                                                                      
T Consensus       193 --------------------------------------------------------------------------------  192 (408)
T d1n11a_         193 --------------------------------------------------------------------------------  192 (408)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhccccccchhhHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhhccccccccCCCCC
Q psy3899         401 WKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQ  480 (923)
Q Consensus       401 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (923)
                              .                                                                   ....
T Consensus       193 --------~-------------------------------------------------------------------~~~~  197 (408)
T d1n11a_         193 --------S-------------------------------------------------------------------PAWN  197 (408)
T ss_dssp             --------C-------------------------------------------------------------------CCTT
T ss_pred             --------c-------------------------------------------------------------------cCCC
Confidence                    0                                                                   0111


Q ss_pred             CCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCcHHH
Q psy3899         481 FISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEI  560 (923)
Q Consensus       481 ~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~  560 (923)
                      +.||+|.++....                               .+....++..+......+..|.||||+|+..++.++
T Consensus       198 ~~t~l~~~~~~~~-------------------------------~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  246 (408)
T d1n11a_         198 GYTPLHIAAKQNQ-------------------------------VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEM  246 (408)
T ss_dssp             CCCHHHHHHHTTC-------------------------------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             CCCcchhhhccch-------------------------------hhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhH
Confidence            2344444433322                               455666677777788888899999999999999999


Q ss_pred             HHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCc
Q psy3899         561 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL  640 (923)
Q Consensus       561 v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~  640 (923)
                      ++.+++.+...+..+.. |.|||+.|+..++.+++++|+++|++++..+..+.||||.|+..++.++++++++.|+++|.
T Consensus       247 ~~~~~~~~~~~~~~~~~-g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~  325 (408)
T d1n11a_         247 VALLLSKQANGNLGNKS-GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA  325 (408)
T ss_dssp             HHHHHTTTCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTC
T ss_pred             hhhhhccccccccccCC-CCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccc
Confidence            99999999988876544 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHH---HHCCCCCCCCCC
Q psy3899         641 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL---VSHTSSLEIPNA  711 (923)
Q Consensus       641 ~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~L---l~~gad~~~~d~  711 (923)
                      +|..|+||||+|+..| +.+++++|+++|||++.+|. .|.||||+|++.|+.++|++|   ++++++....|+
T Consensus       326 ~d~~G~T~Lh~A~~~g-~~~iv~~Ll~~GAd~n~~d~-~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~~~  397 (408)
T d1n11a_         326 KTKLGYSPLHQAAQQG-HTDIVTLLLKNGASPNEVSS-DGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK  397 (408)
T ss_dssp             CCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCSCCCCS-SSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC----
T ss_pred             cCCCCCCHHHHHHHcC-CHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHHHhcccccccccc
Confidence            9999999999999988 99999999999999999998 999999999999999999865   455666665554

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-34  Score=302.56  Aligned_cols=103  Identities=25%  Similarity=0.276  Sum_probs=97.9

Q ss_pred             cCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCh
Q psy3899         535 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST  614 (923)
Q Consensus       535 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t  614 (923)
                      +.+++.+|..|.||||+|+..|+.+++++|++.+++.+..++..|.||||+|++.|+.+++++|+++|+|++.+|..|+|
T Consensus       148 ~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t  227 (255)
T d1oy3d_         148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRT  227 (255)
T ss_dssp             GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCC
Confidence            44678889999999999999999999999999999999887778999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCC
Q psy3899         615 CIHQAAQFGHTRIVAYLVAKGIN  637 (923)
Q Consensus       615 ~Lh~A~~~~~~~~v~~Ll~~g~~  637 (923)
                      |||+|+..++.+++++|+++|++
T Consensus       228 ~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         228 PLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCC
Confidence            99999999999999999999996

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-32  Score=292.81  Aligned_cols=127  Identities=24%  Similarity=0.285  Sum_probs=115.6

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcC
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADPTLMD-SEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF   97 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d-~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~   97 (923)
                      ++|+||.|++.|+.|+|++|+++|+++|.++ ..|+||||+|+..|+.+++++|++.|.+.+..+..+.+|.++|+..+ 
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~-   83 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG-   83 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT-
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC-
Confidence            5799999999999999999999999999865 47999999999999999999999999999999999999999999998 


Q ss_pred             CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCC
Q psy3899          98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE  147 (923)
Q Consensus        98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~  147 (923)
                      ..+....+++...+....+. .|.|+++.|+..|+...++.+++...+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~~~~~~~~~~  132 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDF-YGFTAFMEAAVYGKVKALKFLYKRGANVN  132 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             Cccccchhhhhccccccccc-CCCchhHHHHHhcchhhhhhhhhhccccc
Confidence            48899999998888877777 89999999999999999999998876543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-32  Score=291.15  Aligned_cols=165  Identities=24%  Similarity=0.274  Sum_probs=132.9

Q ss_pred             CCcHhHHHHHcCcHHHHHHHHhCCCccccc---------CCCCCchHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCh
Q psy3899         545 TVTLLHWAAINNRIEIMKYFISQGAIVDAI---------GGDLQATPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGST  614 (923)
Q Consensus       545 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~---------~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t  614 (923)
                      +.|++++|+..|+...++.+++...+++..         ....|.||||+|++.|+.+++++|+++ |++++..+..|.+
T Consensus       105 ~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~  184 (285)
T d1wdya_         105 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN  184 (285)
T ss_dssp             CCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCC
T ss_pred             CCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCc
Confidence            444444444444444444444433332221         233488999999999999999999975 8999999999998


Q ss_pred             HHHHHHHc----CcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHh-cCCCCcccccCCCChHHHHHHH
Q psy3899         615 CIHQAAQF----GHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT-FGASTTIQDKIHGNVALHWAIY  689 (923)
Q Consensus       615 ~Lh~A~~~----~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~-~ga~~~~~d~~~g~TpLh~A~~  689 (923)
                      +++.+...    +..+++++|+++|++++.+|..|.||||+|+..+ +.+++++|++ .|++++.+|. .|+||||+|++
T Consensus       185 ~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~-~~~~v~~lL~~~g~din~~d~-~G~TpL~~A~~  262 (285)
T d1wdya_         185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK-HLGLVQRLLEQEHIEINDTDS-DGKTALLLAVE  262 (285)
T ss_dssp             HHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT-CHHHHHHHHHSSSCCTTCCCT-TSCCHHHHHHH
T ss_pred             ccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcC-cHHHHHHHHHcCCCCCcCCCC-CCCCHHHHHHH
Confidence            88876544    3457899999999999999999999999999888 8899999997 5899999998 99999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCC
Q psy3899         690 AKNHVAITTLVSHTSSLEIPNA  711 (923)
Q Consensus       690 ~~~~~~v~~Ll~~gad~~~~d~  711 (923)
                      +|+.++|++||++|||+|++|.
T Consensus       263 ~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         263 LKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             TTCHHHHHHHHHHSSCSCCSSC
T ss_pred             cCCHHHHHHHHHCCCCCCcccC
Confidence            9999999999999999999984

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-33  Score=284.93  Aligned_cols=197  Identities=28%  Similarity=0.377  Sum_probs=185.7

Q ss_pred             CCChhhHHHHH-HhcCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHH
Q psy3899         522 PTSLSDKYQFV-EAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQ  600 (923)
Q Consensus       522 ~~~~~~~~~ll-~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  600 (923)
                      .++.+.++.++ ..+.+++.+|.+|+||||+|+..|+.++++++++.+......... +.++++.|+..|+.+++++|++
T Consensus        13 ~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~Ll~   91 (223)
T d1uoha_          13 SGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGRDEIVKALLG   91 (223)
T ss_dssp             TTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTT-CCCHHHHHHHHTCHHHHHHHHH
T ss_pred             hCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccccc-ccccccccccccccchhHHHhc
Confidence            34477787776 567799999999999999999999999999999999888876555 8999999999999999999999


Q ss_pred             CCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCC
Q psy3899         601 HGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG  680 (923)
Q Consensus       601 ~g~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g  680 (923)
                      +|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+ ..+++++|...|.+++.+|. .|
T Consensus        92 ~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~-~~~~~~~L~~~~~~i~~~d~-~g  169 (223)
T d1uoha_          92 KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG-NLKMIHILLYYKASTNIQDT-EG  169 (223)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCSCCCCT-TC
T ss_pred             cCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcC-CcchhhhhccccceeeeccC-CC
Confidence            99999999999999999999999999999999999999999999999999999998 88999999999999999998 99


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q psy3899         681 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLE  721 (923)
Q Consensus       681 ~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~  721 (923)
                      +||||+|+..|+.++|++|+++|+|++.+|.+|+||||+|+
T Consensus       170 ~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~  210 (223)
T d1uoha_         170 NTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK  210 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC
T ss_pred             CceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999984

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-33  Score=282.30  Aligned_cols=147  Identities=21%  Similarity=0.224  Sum_probs=131.1

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcC
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF   97 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~-ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~   97 (923)
                      .++.|+.+|..|+.+.|+.+++. +.+++.+|.+|+||||+||..|+.+++++|++.+.+....+..+.++++.|+..|+
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR   82 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccc
Confidence            46889999999999998777644 78899999999999999999999999999999999999889999999999999985


Q ss_pred             CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCC
Q psy3899          98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAP  167 (923)
Q Consensus        98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~  167 (923)
                       .+++++|+++|++++.+|. .|.||||+|+.+|+.+++++|+++|++++..|..|.||||+|+..++..
T Consensus        83 -~~i~~~Ll~~~~d~~~~d~-~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~  150 (223)
T d1uoha_          83 -DEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK  150 (223)
T ss_dssp             -HHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             -cchhHHHhccCceeEeeCC-CCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcc
Confidence             8999999999999999998 9999999999999999999999999999888888888888888765433

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=3.7e-33  Score=295.44  Aligned_cols=145  Identities=22%  Similarity=0.273  Sum_probs=117.5

Q ss_pred             ccHHHHHHH-cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHH--------HHCCCcccccCCCCCcHHH
Q psy3899          20 ATPLHWATR-QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL--------VAKGINVNLQDRNGMTALM   90 (923)
Q Consensus        20 ~T~Lh~Aa~-~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~L--------l~~ga~vn~~d~~g~TpL~   90 (923)
                      +||||+|++ .|+.++++.|.+.++++.. +..|+||||+||..|+.++|++|        ++.|+++|.+|.+|+||||
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh   79 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM   79 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcCC-CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeec
Confidence            488886654 4677777777777766543 24699999999999999988877        4568999999999999999


Q ss_pred             HHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcC---CCCCCCCCCCCChHHHHHhhcCCC
Q psy3899          91 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT---SSLEIPNAQGLTPFMLLEENIGAP  167 (923)
Q Consensus        91 ~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~g---a~~~~~~~~g~t~L~~A~~~g~~~  167 (923)
                      +|+..| +.+++++|+++|++++.+|. .|.|||++|+..|+.++++.+...+   ..++..+..+.++.+.+...+..+
T Consensus        80 ~A~~~g-~~~iv~~Ll~~Gad~n~~~~-~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (277)
T d2fo1e1          80 LAVLAR-RRRLVAYLMKAGADPTIYNK-SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD  157 (277)
T ss_dssp             HHHHHT-CHHHHHHHHHTTCCSCCCCT-TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTT
T ss_pred             cccccc-cccccccccccccccccccc-cccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccc
Confidence            999998 49999999999999999988 8999999999999999999888764   356667777888877777665444

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=9.6e-32  Score=280.84  Aligned_cols=199  Identities=18%  Similarity=0.092  Sum_probs=97.1

Q ss_pred             hhhHHHHHHhcCC---CCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHC
Q psy3899         525 LSDKYQFVEAGQD---VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH  601 (923)
Q Consensus       525 ~~~~~~ll~~~~~---~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  601 (923)
                      .+.++.|++.|++   ++.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|++.
T Consensus        22 ~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~-g~tpL~~A~~~~~~~~~~~Ll~~  100 (255)
T d1oy3d_          22 EPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG-GHTALHLACRVRAHTCACVLLQP  100 (255)
T ss_dssp             HHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTT-SCCHHHHHTTTTCHHHHHHHSSS
T ss_pred             HHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccc-cchhhhhhhccCchHHHHHHHhh
Confidence            4555555555554   4445555566666666666666666666666655554333 55666666666666665555543


Q ss_pred             CCCCCCCC----------CCCChH---HHHHHHcCcHHH-HHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHh
Q psy3899         602 GADPTLMD----------SEGSTC---IHQAAQFGHTRI-VAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT  667 (923)
Q Consensus       602 g~~~~~~d----------~~g~t~---Lh~A~~~~~~~~-v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~  667 (923)
                      +.......          ..+.+.   +........... .......+.+++.+|..|.||||+|+..+ +.+++++|++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~-~~~~v~~Ll~  179 (255)
T d1oy3d_         101 RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHK-DAEMVRLLRD  179 (255)
T ss_dssp             CCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTT-CHHHHHHHHH
T ss_pred             ccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccccccc-ccccccchhc
Confidence            22110000          000000   000000000000 00000011223445566666666666555 5666666666


Q ss_pred             cCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhccC
Q psy3899         668 FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIG  725 (923)
Q Consensus       668 ~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~~~  725 (923)
                      .+++.+..++..|.||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+.+++
T Consensus       180 ~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~  237 (255)
T d1oy3d_         180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN  237 (255)
T ss_dssp             HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSC
T ss_pred             ccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
Confidence            6666555444356666666666666666666666666666666666666666665544

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=4.4e-31  Score=281.67  Aligned_cols=144  Identities=22%  Similarity=0.242  Sum_probs=120.9

Q ss_pred             cCCHHHHHHHHHcCCCCCcc---------CCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCC
Q psy3899          29 QGHLDSVVLLIQHGADPTLM---------DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSL   99 (923)
Q Consensus        29 ~g~~~~V~~Ll~~ga~~~~~---------d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~   99 (923)
                      ....+.++.++....+.+..         +.+|.||||.||..|+.++|++|+++|+++|.+|.+|.||||+|+..|+ .
T Consensus         8 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~-~   86 (291)
T d1s70b_           8 QKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDN-V   86 (291)
T ss_dssp             HHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTC-H
T ss_pred             HhhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCC-c
Confidence            33456677777665444321         1245699999999999999999999999999999999999999999995 9


Q ss_pred             chhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899         100 DPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  179 (923)
Q Consensus       100 ~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~  179 (923)
                      +++++|+++|++++..+. .+.|||+.|+..|+.++++.|+++|++.+..|..|.+|+++|+..+..+     .++.+++
T Consensus        87 eiv~~Ll~~~~~~~~~~~-~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----~~~~ll~  160 (291)
T d1s70b_          87 DMVKFLVENGANINQPDN-EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE-----LLQNEVN  160 (291)
T ss_dssp             HHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHH-----HHHHHHH
T ss_pred             eeeeeecccccccccccc-cccccccccccccccchhhcccccCcccccccccCccccccccccccch-----hcccccc
Confidence            999999999999988888 8999999999999999999999999999999999999999998887766     5555554

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=3.5e-31  Score=280.16  Aligned_cols=118  Identities=19%  Similarity=0.190  Sum_probs=101.3

Q ss_pred             ChHHHHHHH-hCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHH--------HhcCCCcccccccCCCcH
Q psy3899          53 STCIHQAAQ-FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLL--------ITFGASTTIQDKIHGNVA  123 (923)
Q Consensus        53 ~TpLh~Aa~-~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lL--------l~~ga~~~~~d~~~g~T~  123 (923)
                      .||||+|+. .|+.++++.|.+.++++.. ++.|+||||+||..| +.++|++|        ++.|+|+|.+|. +|+||
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~~-~~~g~T~Lh~A~~~g-~~~~v~~Ll~~~~~~~l~~Gadvn~~d~-~G~Tp   77 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNS-SAEKSEDLIVHEAKECIAAGADVNAMDC-DENTP   77 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTCC-CSSCCCHHHHHHCTT-CCSCCTTHHHHHHHHHHHTCCCTTCCCT-TSCCH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcCC-CCCCccHHHHHHHcC-CHHHHHHHHhcchhHHHHcCCCccccCC-CCCee
Confidence            489886554 6788888888888766533 245999999999999 49999887        567999999999 99999


Q ss_pred             HHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHH
Q psy3899         124 LHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKIT  178 (923)
Q Consensus       124 L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~  178 (923)
                      ||+|+.+|+.++|++|+++|++++.+|..|.||++.|...++.+     ++..+.
T Consensus        78 Lh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~-----~~~~l~  127 (277)
T d2fo1e1          78 LMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFG-----MMVYML  127 (277)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHH-----HHHHHT
T ss_pred             eccccccccccccccccccccccccccccccccccchhhhcchh-----hhhhhh
Confidence            99999999999999999999999999999999999999998777     555543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.1e-30  Score=267.89  Aligned_cols=146  Identities=21%  Similarity=0.207  Sum_probs=102.4

Q ss_pred             ccHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccc---cCCCCCcHHHHHHHh
Q psy3899          20 ATPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL---QDRNGMTALMWSAYK   95 (923)
Q Consensus        20 ~T~Lh~Aa~~g~~~~V~~Ll~~-ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~---~d~~g~TpL~~Aa~~   95 (923)
                      +||||+||..|+.+.|+.|++. +.+++.+|.+|+||||+|+..|+.+++++|+++|++++.   .+..|.||+|+|+..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            4788888888888888877764 577888888888888888888888888888888887653   455667777777766


Q ss_pred             cCCCchhHHHHhcCCCcc--cccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCC
Q psy3899          96 VFSLDPTRLLITFGASTT--IQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAP  167 (923)
Q Consensus        96 g~~~~vv~lLl~~ga~~~--~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~  167 (923)
                      + ..++++.++..+...+  ..+. .+.||++.++..++.+++++|++.|.+.+.+|..|+||||+|+..|+.+
T Consensus        81 ~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~  152 (229)
T d1ixva_          81 G-NLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK  152 (229)
T ss_dssp             T-CHHHHHHHHSSSSCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH
T ss_pred             c-cccccccccccccccccccccc-ccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccc
Confidence            6 3667777666665433  2344 5667777777777777777777666666666666666666666555444

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=5.5e-31  Score=280.89  Aligned_cols=197  Identities=27%  Similarity=0.364  Sum_probs=182.7

Q ss_pred             ChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCC
Q psy3899         524 SLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA  603 (923)
Q Consensus       524 ~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~  603 (923)
                      +.+.++.|+++|+|+|.+|.+|.||||+|+.+|+.+++++|+++|++....... +.|||++|+..++.++++.|+++|+
T Consensus        52 ~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~-~~~~L~~a~~~~~~~~~~~l~~~~~  130 (291)
T d1s70b_          52 DTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE-GWIPLHAAASCGYLDIAEYLISQGA  130 (291)
T ss_dssp             CHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccc-ccccccccccccccchhhcccccCc
Confidence            389999999999999999999999999999999999999999999998776544 8999999999999999999999999


Q ss_pred             CCCCCCCCCChHHHHHHHcCcHHHHHHHHHc-CCC--------------------------CCccCCCCCcHHHHHHHhh
Q psy3899         604 DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GIN--------------------------VNLQDRNGMTALMWSAYKV  656 (923)
Q Consensus       604 ~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~-g~~--------------------------~~~~d~~g~t~Lh~a~~~~  656 (923)
                      +.+..|..|.+|+++|+..+..+.++.++.. +.+                          ....+..|.||||+|+..+
T Consensus       131 ~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~  210 (291)
T d1s70b_         131 HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKG  210 (291)
T ss_dssp             CTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             ccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcC
Confidence            9999999999999999999998888888754 333                          3556789999999999998


Q ss_pred             CCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhc
Q psy3899         657 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN  723 (923)
Q Consensus       657 ~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~  723 (923)
                       +.++++.|++.|++++.++. .|+||||+|+..|+.++|++|+++|+|++.+|.+|+||||+|+++
T Consensus       211 -~~~~~~~Ll~~g~din~~~~-~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e~  275 (291)
T d1s70b_         211 -YTEVLKLLIQARYDVNIKDY-DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED  275 (291)
T ss_dssp             -CHHHHHHHHTTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG
T ss_pred             -Chhhhcccccceeccccccc-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHH
Confidence             89999999999999999998 999999999999999999999999999999999999999999763

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=8.4e-30  Score=261.22  Aligned_cols=208  Identities=23%  Similarity=0.309  Sum_probs=189.4

Q ss_pred             CccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHH-hcCCCCCCCCCCCcHhHHHHHcCcHHHH
Q psy3899         483 SPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVE-AGQDVNEPDSETVTLLHWAAINNRIEIM  561 (923)
Q Consensus       483 t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v  561 (923)
                      ||||.||..+.                               .+.++.|++ .+.+++.+|.+|.||||+|+..|+.+++
T Consensus         2 ~pLh~A~~~g~-------------------------------~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv   50 (229)
T d1ixva_           2 YPLHQACMENE-------------------------------FFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEIT   50 (229)
T ss_dssp             CHHHHHHHHTC-------------------------------HHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HhHHHHHHcCC-------------------------------HHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCcccc
Confidence            79999998876                               677777776 5689999999999999999999999999


Q ss_pred             HHHHhCCCcccc--cCCCCCchHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCChHHHHHHHcCcHHHHHHHHHcCCC
Q psy3899         562 KYFISQGAIVDA--IGGDLQATPLHWATRQGHLDSVVLLIQHGADP--TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN  637 (923)
Q Consensus       562 ~~Ll~~g~~~~~--~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~--~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  637 (923)
                      ++|+++|++++.  ..+..|.+|+|+|+..+..++++.++..+.+.  ...+..+.||++.++..++.+++++|++.|.+
T Consensus        51 ~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~  130 (229)
T d1ixva_          51 SFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS  130 (229)
T ss_dssp             HHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             chhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccc
Confidence            999999998864  34556999999999999999999999987754  45678899999999999999999999999999


Q ss_pred             CCccCCCCCcHHHHHHHhhCCcchHHHHHhcC-CCCcccccCCCChHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCC
Q psy3899         638 VNLQDRNGMTALMWSAYKVFSLDPTRLLITFG-ASTTIQDKIHGNVALHWAIYAKNHVAITTLVS-HTSSLEIPNAQGLT  715 (923)
Q Consensus       638 ~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~g-a~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t  715 (923)
                      .+..|..|+||||+|+..+ +.++++.|++.| .+++.+|. .|+||||+|+.+|+.++|++|++ .|+|++.+|.+|+|
T Consensus       131 ~~~~~~~g~t~l~~a~~~~-~~~~~~~Ll~~~~~~in~~d~-~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t  208 (229)
T d1ixva_         131 VRIKDKFNQIPLHRAASVG-SLKLIELLCGLGKSAVNWQDK-QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAK  208 (229)
T ss_dssp             SCCCCTTSCCHHHHHHHHT-CHHHHHHHHTTTCCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCC
T ss_pred             ccccCCCCCCccchhhhcc-ccccccccccccccccccccc-ccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCC
Confidence            9999999999999999998 899999999987 68899988 99999999999999999999997 59999999999999


Q ss_pred             HHHHHHhc
Q psy3899         716 PFMLLEEN  723 (923)
Q Consensus       716 pl~~a~~~  723 (923)
                      ||++|.++
T Consensus       209 ~l~~A~~~  216 (229)
T d1ixva_         209 AEDVALNE  216 (229)
T ss_dssp             TGGGCSCH
T ss_pred             HHHHHhhH
Confidence            99999753

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.7e-29  Score=255.91  Aligned_cols=180  Identities=26%  Similarity=0.343  Sum_probs=160.0

Q ss_pred             CCCcHhHHHHHcCcH----HHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q psy3899         544 ETVTLLHWAAINNRI----EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA  619 (923)
Q Consensus       544 ~g~t~Lh~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A  619 (923)
                      +|.||||+|+..|+.    ++++.+...|+++|..+. .|+||||+|+..|+.+++++|+++|+|++.+|..|.||||.|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~-~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-LQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCT-TCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCC-CCCccccccccccccccccccccccccccccccccccccccc
Confidence            699999999999985    455667778999987665 599999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHHcCCCC------CccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCH
Q psy3899         620 AQFGHTRIVAYLVAKGINV------NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH  693 (923)
Q Consensus       620 ~~~~~~~~v~~Ll~~g~~~------~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~  693 (923)
                      +..++.++++.|++.+.+.      ......|.||||.|+..+ +.+++++|+..|++++.+++..|+||||+|+..|+.
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~  158 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG-YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP  158 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTT-CHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             cccccccccchhhhhcccccccccccccccccchhhhHHhhcC-ChhheeeecccCcccccccccCCCCccccccccccH
Confidence            9999999999999986553      334557899999999888 899999999999999998876899999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHhccC
Q psy3899         694 VAITTLVSHTSSLEIPNAQGLTPFMLLEENIG  725 (923)
Q Consensus       694 ~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~~~  725 (923)
                      +++++|+++|+|++.+|.+|+||+|+|+..+.
T Consensus       159 ~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~  190 (221)
T d1iknd_         159 DLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS  190 (221)
T ss_dssp             HHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSC
T ss_pred             HHHHHHHhcCCcccccCCCCCCHHHHHHHCCC
Confidence            99999999999999999999999999998753

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=1.3e-28  Score=248.28  Aligned_cols=170  Identities=25%  Similarity=0.314  Sum_probs=156.9

Q ss_pred             CccccccCcccccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcH---------------
Q psy3899           1 MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHT---------------   65 (923)
Q Consensus         1 v~~Li~~g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~---------------   65 (923)
                      |++|+++|+|+|...+..|+||||+||+.|+.|+|++|++.|++++.++..+.|+++.++..++.               
T Consensus         5 v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (209)
T d1ot8a_           5 ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLN   84 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTT
T ss_pred             HHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            57899999999985334499999999999999999999999999999999999998877766444               


Q ss_pred             -------------------HHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHH
Q psy3899          66 -------------------RIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW  126 (923)
Q Consensus        66 -------------------~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~  126 (923)
                                         .+.+.|.+.+++++.++..|.|||++|+..+ ..++++.|++.+.+++..|. .|.||||+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~-~~~~~~~l~~~~~~~~~~d~-~g~TpL~~  162 (209)
T d1ot8a_          85 ARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVN-NTEAVNILLMHHANRDAQDD-KDETPLFL  162 (209)
T ss_dssp             CCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TCCCHHHH
T ss_pred             cccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccC-cceeeeeecccccccccccc-ccccccch
Confidence                               5667777789999999999999999999999 59999999999999999999 99999999


Q ss_pred             HHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHH
Q psy3899         127 AIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI  177 (923)
Q Consensus       127 A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L  177 (923)
                      |+..|+.++|++|+++|+|++.+|..|+||||+|++.|+.+     +|++|
T Consensus       163 A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~-----iv~lL  208 (209)
T d1ot8a_         163 AAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHD-----IVRLL  208 (209)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH-----HHHHH
T ss_pred             hccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHH-----HHhhc
Confidence            99999999999999999999999999999999999999999     99876

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.6e-28  Score=247.40  Aligned_cols=196  Identities=28%  Similarity=0.239  Sum_probs=171.7

Q ss_pred             CCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCcHH
Q psy3899         480 QFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIE  559 (923)
Q Consensus       480 ~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~  559 (923)
                      .|.||||+|+..+..+.+.                           ++++.+...|+++|.+|.+|.||||+|+..|+.+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~---------------------------~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~   53 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTM---------------------------EVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPE   53 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSS---------------------------CCCC-----CCCCCCCCTTCCCHHHHHHHTTCHH
T ss_pred             CCChHHHHHHHcCCHHHHH---------------------------HHHHHHHhCCCCcccCCCCCCccccccccccccc
Confidence            3789999999988765433                           3445667789999999999999999999999999


Q ss_pred             HHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCC------CCCCCChHHHHHHHcCcHHHHHHHHH
Q psy3899         560 IMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTL------MDSEGSTCIHQAAQFGHTRIVAYLVA  633 (923)
Q Consensus       560 ~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~------~d~~g~t~Lh~A~~~~~~~~v~~Ll~  633 (923)
                      ++++|+++|++++..+.. |.||||+|+..|+.++++.|++.+.+...      ....|.||||.|+..++.+++++|++
T Consensus        54 iv~~L~~~g~d~~~~d~~-g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~  132 (221)
T d1iknd_          54 IAEALLGAGCDPELRDFR-GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS  132 (221)
T ss_dssp             HHHCCCSCCCCSCCCCTT-CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccccccccccc-cccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecc
Confidence            999999999999876555 99999999999999999999998766432      44568999999999999999999999


Q ss_pred             cCCCCCccC-CCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCC
Q psy3899         634 KGINVNLQD-RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS  705 (923)
Q Consensus       634 ~g~~~~~~d-~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad  705 (923)
                      .|.+++..+ .+|.||||+|+..| +.+++++|+++|+|++.+|. .|+||||+|+..++.+++++|++.+.+
T Consensus       133 ~~~~~~~~~~~~G~T~L~~A~~~g-~~~~v~~Ll~~gad~~~~~~-~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         133 LGADVNAQEPCNGRTALHLAVDLQ-NPDLVSLLLKCGADVNRVTY-QGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             HTCCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHTTTCCSCCCCT-TCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             cCcccccccccCCCCccccccccc-cHHHHHHHHhcCCcccccCC-CCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            999988776 57999999999998 99999999999999999998 999999999999999999999999764

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.8e-27  Score=239.58  Aligned_cols=117  Identities=29%  Similarity=0.360  Sum_probs=69.6

Q ss_pred             CCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCc
Q psy3899         545 TVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH  624 (923)
Q Consensus       545 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~  624 (923)
                      ..++||.+.........+.|.....+........|.+||+.|+..+..++++.++++|.+++.+|..|.||||+|+..|+
T Consensus       110 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~  189 (228)
T d1k1aa_         110 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL  189 (228)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTC
T ss_pred             cccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCC
Confidence            44555555555555555556555555444444445666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchH
Q psy3899         625 TRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPT  662 (923)
Q Consensus       625 ~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~  662 (923)
                      .+++++|+++|+|++.+|.+|+||||+|+.+| +.+++
T Consensus       190 ~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~-~~div  226 (228)
T d1k1aa_         190 LPLVRTLVRSGADSSLKNCHNDTPLMVARSRR-VIDIL  226 (228)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHH-HHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCC-Ccccc
Confidence            66666666666666666666666666665555 44433

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=6e-27  Score=236.04  Aligned_cols=199  Identities=23%  Similarity=0.272  Sum_probs=182.5

Q ss_pred             hhhHHHHHHhcCCCCC-CCCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCC
Q psy3899         525 LSDKYQFVEAGQDVNE-PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA  603 (923)
Q Consensus       525 ~~~~~~ll~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~  603 (923)
                      .|+++.|+++|+|+|. .|.+|.||||+||..|+.+++++|++.|++++..+.. +.++++.++..++............
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNT-GRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccc-ccccccccccccccccccccccccc
Confidence            5889999999999997 5899999999999999999999999999999987655 8999999999999988877776543


Q ss_pred             C-CCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCCh
Q psy3899         604 D-PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNV  682 (923)
Q Consensus       604 ~-~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~T  682 (923)
                      . .......|.++.+.+.........+.|.+.+++++.+|..|.|||++++..+ ..++++.++..+.+++..|. .|.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~-~~~~~~~l~~~~~~~~~~d~-~g~T  158 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVN-NTEAVNILLMHHANRDAQDD-KDET  158 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TCCC
T ss_pred             cccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccC-cceeeeeecccccccccccc-cccc
Confidence            3 3345667889999999999999999999999999999999999999999888 88999999999999999998 8999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhccCC
Q psy3899         683 ALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGA  726 (923)
Q Consensus       683 pLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~~~~~~  726 (923)
                      |||+|+..|+.++|++|+++|+|++.+|.+|+||||+|+++++.
T Consensus       159 pL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~  202 (209)
T d1ot8a_         159 PLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHH  202 (209)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            99999999999999999999999999999999999999998653

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=1.1e-29  Score=276.52  Aligned_cols=150  Identities=14%  Similarity=0.018  Sum_probs=118.8

Q ss_pred             CcccccccCCCCccHHHHHHHcCCHHHHHH---HHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccC--
Q psy3899           8 GAIVDAIGGDLQATPLHWATRQGHLDSVVL---LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD--   82 (923)
Q Consensus         8 g~~~n~~~~~~g~T~Lh~Aa~~g~~~~V~~---Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d--   82 (923)
                      +.+++.++.. |.||||+||+.|+.++|+.   |++.|++++.+|.+|+||||+||++||.++|++|+++|++++..+  
T Consensus        80 ~~~~~~~~~~-~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~  158 (346)
T d2ajaa1          80 WSDAHKKGIK-SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ  158 (346)
T ss_dssp             HHHHHHHTCC-HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHS
T ss_pred             hhHHHhccCC-CCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccc
Confidence            3455666655 8999999999999877655   788899999999999999999999999999999999999988875  


Q ss_pred             CCCCcHHHHHHHhcCCCchhHHHHhcCCCccc---ccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHH
Q psy3899          83 RNGMTALMWSAYKVFSLDPTRLLITFGASTTI---QDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML  159 (923)
Q Consensus        83 ~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~---~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~  159 (923)
                      .+|.||||+||.+|| .++|++|++.|+++..   .+. +|.||++.|+.+|+.++|++|+++|++++       ++.+.
T Consensus       159 ~~g~t~L~~Aa~~g~-~~iv~~Ll~~~~~~~~~~~~~~-~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~-------~~~~~  229 (346)
T d2ajaa1         159 AENYHAFRLAAENGH-LHVLNRLCELAPTEATAMIQAE-NYYAFRWAAVGRGHHNVINFLLDCPVMLA-------YAEIH  229 (346)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHSCGGGHHHHHHHH-HHHHHHHHHSTTCCHHHHHHHTTSHHHHH-------HHHHC
T ss_pred             cCCCChhHHHHHHhh-HHHHHHHHHcCCcccccccccC-CCcchhhHHhhcCHHHHHHHHHhCCCCcc-------hHHHH
Confidence            458999999999995 9999999999877633   334 56788888889999999999999887653       35566


Q ss_pred             HHhhcCCC
Q psy3899         160 LEENIGAP  167 (923)
Q Consensus       160 A~~~g~~~  167 (923)
                      +...++..
T Consensus       230 ~~~~~~~~  237 (346)
T d2ajaa1         230 EFEYGEKY  237 (346)
T ss_dssp             TTTTTTTT
T ss_pred             HHHcCcHh
Confidence            66666655

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-26  Score=234.46  Aligned_cols=215  Identities=22%  Similarity=0.259  Sum_probs=187.0

Q ss_pred             CCCCccccccccccccccccccccCCCcchhhhhHhhcccCCCCChhhHHHHHHhcCCCCCCCCCCCcHhHHHHHcCcHH
Q psy3899         480 QFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFVEAGQDVNEPDSETVTLLHWAAINNRIE  559 (923)
Q Consensus       480 ~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~  559 (923)
                      .|+||||.||..++.+.++                           ..++.+.+.|++++.+|.+|.||||+|+..|+.+
T Consensus         2 dG~TpLh~A~~~g~~~~v~---------------------------~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~   54 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVH---------------------------RLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS   54 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHH---------------------------HHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCccHHHHHHHcCCHHHHH---------------------------HHHHHHHHCCCCCCccCCCCCccceehhcccccc
Confidence            4899999999988744321                           2233444689999999999999999999999999


Q ss_pred             HHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCChHHHHHHHcCcHHHHHHHHHcC
Q psy3899         560 IMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA----DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG  635 (923)
Q Consensus       560 ~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~----~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g  635 (923)
                      ++++|+++|++.+..... |.++++.|...++.++++.+.....    ..+.....+.++|+.+.........+.|....
T Consensus        55 iv~~Ll~~ga~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~  133 (228)
T d1k1aa_          55 VVRLLVTAGASPMALDRH-GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG  133 (228)
T ss_dssp             HHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             cccccccccccccccccc-cccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccc
Confidence            999999999999877655 8999999999999999998876432    24455677889999999999999999999886


Q ss_pred             CCC-CccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Q psy3899         636 INV-NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGL  714 (923)
Q Consensus       636 ~~~-~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~  714 (923)
                      .+. ...+..|.+||+.|+..+ ...+++.+++.|.+.+.+|. .|+||||+|+..|+.+++++|+++|+|++.+|.+|+
T Consensus       134 ~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~  211 (228)
T d1k1aa_         134 ADIDAVDIKSGRSPLIHAVENN-SLSMVQLLLQHGANVNAQMY-SGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND  211 (228)
T ss_dssp             CCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCBCT-TSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             cccccccccchhhHHHHHHHhh-hhhhhhhhhhhccccccccc-cCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence            654 455668999999999887 88999999999999999998 999999999999999999999999999999999999


Q ss_pred             CHHHHHHhcc
Q psy3899         715 TPFMLLEENI  724 (923)
Q Consensus       715 tpl~~a~~~~  724 (923)
                      |||++|++++
T Consensus       212 TpL~~A~~~~  221 (228)
T d1k1aa_         212 TPLMVARSRR  221 (228)
T ss_dssp             CTTTTCSSHH
T ss_pred             CHHHHHHhCC
Confidence            9999998764

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.5e-26  Score=219.65  Aligned_cols=155  Identities=23%  Similarity=0.270  Sum_probs=146.1

Q ss_pred             CCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q psy3899         544 ETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG  623 (923)
Q Consensus       544 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~  623 (923)
                      +| +|||+||..|+.++|++|+++|++++..+.. |.||||+|+ .|+.+++++|+++|++++.++..|.++++.++..+
T Consensus         1 ~~-~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~-g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~   77 (156)
T d1ihba_           1 WG-NELASAAARGDLEQLTSLLQNNVNVNAQNGF-GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG   77 (156)
T ss_dssp             CH-HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTT-SCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             Ch-HHHHHHHHcCCHHHHHHHHHCCCCcCccCCc-ccccccccc-cccccccccccccccccccccccCccccccccccc
Confidence            35 8999999999999999999999999987654 999999886 78999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCC-CCcccccCCCChHHHHHHHcCCHHHHHHHHHC
Q psy3899         624 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA-STTIQDKIHGNVALHWAIYAKNHVAITTLVSH  702 (923)
Q Consensus       624 ~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga-~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~  702 (923)
                      ..+.++.|++.+.+++..|..|.+|||+|+..+ +.+++++|+++++ +.+.+|. .|+||||+|+..|+.+++++|+++
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~Ll~~~~~~~~~~d~-~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_          78 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG-HLRVVEFLVKHTASNVGHRNH-KGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHHSCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccc-cccccccccccccccccccCC-CCCCHHHHHHHcCCHHHHHHHHhc
Confidence            999999999999999999999999999999888 8899999999886 7888888 999999999999999999999998


Q ss_pred             C
Q psy3899         703 T  703 (923)
Q Consensus       703 g  703 (923)
                      |
T Consensus       156 G  156 (156)
T d1ihba_         156 G  156 (156)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-26  Score=221.73  Aligned_cols=152  Identities=26%  Similarity=0.338  Sum_probs=146.5

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCC
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS   98 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~   98 (923)
                      | +|||+||..|+.++|+.|+++|++++.+|.+|+||||+|+ .||.+++++|+++|++++.++..|.|||+.++..+ .
T Consensus         2 ~-~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~-~   78 (156)
T d1ihba_           2 G-NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG-F   78 (156)
T ss_dssp             H-HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT-C
T ss_pred             h-HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccc-c
Confidence            5 8999999999999999999999999999999999999886 79999999999999999999999999999999999 5


Q ss_pred             CchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCC-CCCCCCCCCCChHHHHHhhcCCCCCchhhhhHH
Q psy3899          99 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS-SLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI  177 (923)
Q Consensus        99 ~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga-~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L  177 (923)
                      .+.++.|++.+.+++..|. .|.+|||+|+..|+.+++++|+++++ +++.+|..|+||||+|+..|+.+     ++++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~-----iv~~L  152 (156)
T d1ihba_          79 LDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE-----VVSLM  152 (156)
T ss_dssp             HHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH-----HHHHH
T ss_pred             ccccccccccccccccccc-ccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHH-----HHHHH
Confidence            9999999999999999998 99999999999999999999999986 88999999999999999999999     99999


Q ss_pred             HH
Q psy3899         178 TE  179 (923)
Q Consensus       178 ~~  179 (923)
                      ++
T Consensus       153 l~  154 (156)
T d1ihba_         153 QA  154 (156)
T ss_dssp             HH
T ss_pred             Hh
Confidence            86

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.7e-26  Score=219.37  Aligned_cols=151  Identities=25%  Similarity=0.356  Sum_probs=143.2

Q ss_pred             ccHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCC
Q psy3899          20 ATPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS   98 (923)
Q Consensus        20 ~T~Lh~Aa~~g~~~~V~~Ll~~-ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~   98 (923)
                      .+.||.||..|+.++|+.||+. +++++.+|..|+||||+|+. |+.+++++|++++++++..+..|.+||+.|+..+ .
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~-~   80 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTG-F   80 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-C
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-cccccccccccccccccccccccccccccccccc-c
Confidence            3569999999999999999986 89999999999999999875 8899999999999999999999999999999999 4


Q ss_pred             CchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHH
Q psy3899          99 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKIT  178 (923)
Q Consensus        99 ~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~  178 (923)
                      .+++++++++|++++.+|. .|.||||+|+..|+.+++++|+ .|++++.+|..|+||||+|++.|+.+     ++++|+
T Consensus        81 ~~~~~~~l~~~~~~n~~~~-~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~-----iv~~Ll  153 (156)
T d1bd8a_          81 LDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQD-----LVDILQ  153 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHH-----HHHHHH
T ss_pred             ccccccccccccccccccC-CCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHH-----HHHHHH
Confidence            9999999999999999998 9999999999999999999888 68999999999999999999999999     999998


Q ss_pred             H
Q psy3899         179 E  179 (923)
Q Consensus       179 ~  179 (923)
                      +
T Consensus       154 ~  154 (156)
T d1bd8a_         154 G  154 (156)
T ss_dssp             T
T ss_pred             h
Confidence            5

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1e-25  Score=214.57  Aligned_cols=150  Identities=24%  Similarity=0.308  Sum_probs=144.1

Q ss_pred             ccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCC
Q psy3899          20 ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSL   99 (923)
Q Consensus        20 ~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~   99 (923)
                      .||||.||+.|+.++|++||++|++++ .|..|+||||+|+..++.++++.++......+..+..+.++++.++... ..
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   80 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG-HA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT-CH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence            499999999999999999999999987 6999999999999999999999999998888888999999999999988 59


Q ss_pred             chhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHH
Q psy3899         100 DPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI  177 (923)
Q Consensus       100 ~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L  177 (923)
                      +.++++.++|++++.+|. .|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.+|+.+     ++++|
T Consensus        81 ~~~~~l~~~~~~~~~~~~-~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~e-----iv~lL  152 (153)
T d1awcb_          81 NIVEVLLKHGADVNAKDM-LKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNED-----LAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH-----HHHHH
T ss_pred             eeeecccccCCccccccc-cCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHH-----HHHhC
Confidence            999999999999999999 9999999999999999999999999999999999999999999999999     99876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.7e-25  Score=210.00  Aligned_cols=151  Identities=21%  Similarity=0.287  Sum_probs=140.4

Q ss_pred             cHhHHHHHcCcHHHHHHHHhC-CCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcH
Q psy3899         547 TLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHT  625 (923)
Q Consensus       547 t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~  625 (923)
                      +.||.||..|+.++|+.|++. +++++..+. .|+||||+|+ .|+.+++++|++++++++..+..|.+|++.|++.++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~-~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNR-FGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCT-TSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCC-CCCccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            459999999999999999975 778887654 5999999987 4889999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHC
Q psy3899         626 RIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH  702 (923)
Q Consensus       626 ~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~  702 (923)
                      +++++++++|++++.+|..|.||||+|+..| +.+++++|+ .|++++.+|. .|+||||+|+..|+.+++++|++|
T Consensus        82 ~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~-~~~i~~~L~-~~~~~~~~d~-~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEG-HTAVVSFLA-AESDLHRRDA-RGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT-CHHHHHHHH-TTSCTTCCCT-TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccccCCCCeeeccccccc-ccccccccc-ccccccccCC-CCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999999999999999999988 889999887 6899999998 999999999999999999999986

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.3e-24  Score=206.73  Aligned_cols=150  Identities=29%  Similarity=0.365  Sum_probs=131.0

Q ss_pred             CcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcH
Q psy3899         546 VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHT  625 (923)
Q Consensus       546 ~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~~~~  625 (923)
                      .||||.|++.|+.++|++|+++|++++.  +..|+||||+|+..++.++++.++.........+..+.++++.++...+.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~~--~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCCC--CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCccc--ccCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4889999999999999999999987762  45589999999999999999988888888777888888899999999999


Q ss_pred             HHHHHHHHcCCCCCccCCCCCcHHHHHHHhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHH
Q psy3899         626 RIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL  699 (923)
Q Consensus       626 ~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~L  699 (923)
                      ++++++...|++.+.+|..|.||||+|+..| +.+++++|++.|+|++..|. .|.||||+|+.+|+.+++++|
T Consensus        81 ~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g-~~~iv~~ll~~gad~~~~d~-~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          81 NIVEVLLKHGADVNAKDMLKMTALHWATEHN-HQEVVELLIKYGADVHTQSK-FCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeecccccCCccccccccCchHHHhhhhcc-hhheeeeccccccCCcccCC-CCCCHHHHHHHcCCHHHHHhC
Confidence            9999999888898888999999999998887 88899999999999998887 899999999999999998866

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=4.4e-27  Score=255.71  Aligned_cols=153  Identities=10%  Similarity=-0.026  Sum_probs=124.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCC-----------ccCCCCChHHHHHHHhCcHHHHHH---HHHCCCcccccCCCCC
Q psy3899          21 TPLHWATRQGHLDSVVLLIQHGADPT-----------LMDSEGSTCIHQAAQFGHTRIVAY---LVAKGINVNLQDRNGM   86 (923)
Q Consensus        21 T~Lh~Aa~~g~~~~V~~Ll~~ga~~~-----------~~d~~g~TpLh~Aa~~g~~~iv~~---Ll~~ga~vn~~d~~g~   86 (923)
                      +.++.+...+..++++++...+++.+           .++.+|.||||+||++||.+++++   |++.|+++|.+|.+|.
T Consensus        48 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~  127 (346)
T d2ajaa1          48 IHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENY  127 (346)
T ss_dssp             HHHCCCCSSHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHcchhhccchhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCC
Confidence            44444555555677777766644333           456789999999999999887766   7899999999999999


Q ss_pred             cHHHHHHHhcCCCchhHHHHhcCCCcccccc-cCCCcHHHHHHHhCcHHHHHHHHhcCCCC---CCCCCCCCChHHHHHh
Q psy3899          87 TALMWSAYKVFSLDPTRLLITFGASTTIQDK-IHGNVALHWAIYAKNHVAITTLVSHTSSL---EIPNAQGLTPFMLLEE  162 (923)
Q Consensus        87 TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~-~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~---~~~~~~g~t~L~~A~~  162 (923)
                      ||||+||.+|| .++|++|++.|++++..+. ..|.||||+||.+|+.++|++|++.|++.   +..+..|.||++.|++
T Consensus       128 taL~~Aa~~G~-~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~  206 (346)
T d2ajaa1         128 QAFRLAAENGH-LHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG  206 (346)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHCCC-HHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhh
Confidence            99999999996 9999999999999998763 15899999999999999999999999764   3445667888999999


Q ss_pred             hcCCCCCchhhhhHHHH
Q psy3899         163 NIGAPWLGKATVDKITE  179 (923)
Q Consensus       163 ~g~~~~~~~~~v~~L~~  179 (923)
                      +|+.+     ++++|++
T Consensus       207 ~g~~~-----iv~~Ll~  218 (346)
T d2ajaa1         207 RGHHN-----VINFLLD  218 (346)
T ss_dssp             TCCHH-----HHHHHTT
T ss_pred             cCHHH-----HHHHHHh
Confidence            99999     9999987

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.4e-25  Score=203.21  Aligned_cols=120  Identities=24%  Similarity=0.297  Sum_probs=113.4

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCC-cHHHHHHHhcC
Q psy3899          19 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGM-TALMWSAYKVF   97 (923)
Q Consensus        19 g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~-TpL~~Aa~~g~   97 (923)
                      +.++||+||+.|+.|+|++|+++|++++.+|..|.||||+|+ .||.+++++|+++|+++|.+|..|. ||||+|+..|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            569999999999999999999999999999999999999775 7999999999999999999998876 69999999994


Q ss_pred             CCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHh
Q psy3899          98 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVS  141 (923)
Q Consensus        98 ~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~  141 (923)
                       .+++++|+++|++++.+|. .|.||||+|+++|+.++|++|++
T Consensus        82 -~~~v~~Ll~~ga~~~~~d~-~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 -LDTLVVLHRAGARLDVRDA-WGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             -HHHHHHHHHHTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             -ccccccccccccccccccC-CCCCHHHHHHHcCCHHHHHHHHh
Confidence             9999999999999999998 99999999999999999999985

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.1e-25  Score=203.19  Aligned_cols=105  Identities=29%  Similarity=0.480  Sum_probs=62.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCc
Q psy3899          21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLD  100 (923)
Q Consensus        21 T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~  100 (923)
                      |||++||+.|+.++|+.|+++|++++.+|.+|+||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+.+| +.+
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~-~~~   82 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG-HVS   82 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTT-CCH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcC-chh
Confidence            5666666666666666666666666666666666666666666666666666666655555555555555555555 355


Q ss_pred             hhHHHHhcCCCcccccccCCCcHHHHH
Q psy3899         101 PTRLLITFGASTTIQDKIHGNVALHWA  127 (923)
Q Consensus       101 vv~lLl~~ga~~~~~d~~~g~T~L~~A  127 (923)
                      ++++|+++|++++.+|. .|.||||+|
T Consensus        83 ~v~~Ll~~Gad~~~~d~-~G~t~l~~a  108 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGP-DGLTALEAT  108 (118)
T ss_dssp             HHHHHHTTCCCSSSSSS-STCCCCCTC
T ss_pred             hhhhhhcccccceeeCC-CCCCHHHHH
Confidence            55555555555555555 555555555

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.8e-24  Score=230.68  Aligned_cols=152  Identities=22%  Similarity=0.267  Sum_probs=127.0

Q ss_pred             ccCcccccc-cCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcH-------HHHHHHHHCCCc
Q psy3899           6 SQGAIVDAI-GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHT-------RIVAYLVAKGIN   77 (923)
Q Consensus         6 ~~g~~~n~~-~~~~g~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~-------~iv~~Ll~~ga~   77 (923)
                      ..++|+|.. |.+ |+||||+||..|+.++|++||++|++++.+|..|+||||.|+..||.       +++++|.   ..
T Consensus        94 ~~~~dvn~~~D~~-G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~  169 (301)
T d1sw6a_          94 NTQLNLNIPVDEH-GNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PC  169 (301)
T ss_dssp             TSCCCSCSCCSTT-CCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GG
T ss_pred             ccCCCcCcCcCCC-CCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hh
Confidence            467889976 554 99999999999999999999999999999999999999999998873       4444443   35


Q ss_pred             ccccCCCCCcHHHHHHHhcCCC---c--------hhHHHHhcCCC-----------------------------------
Q psy3899          78 VNLQDRNGMTALMWSAYKVFSL---D--------PTRLLITFGAS-----------------------------------  111 (923)
Q Consensus        78 vn~~d~~g~TpL~~Aa~~g~~~---~--------vv~lLl~~ga~-----------------------------------  111 (923)
                      ++.+|..|+||||+|+..+...   .        ++.++.+.+..                                   
T Consensus       170 ~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (301)
T d1sw6a_         170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA  249 (301)
T ss_dssp             GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH
T ss_pred             hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh
Confidence            7788999999999999876421   1        23344443322                                   


Q ss_pred             --cccccccCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHh
Q psy3899         112 --TTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEE  162 (923)
Q Consensus       112 --~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~  162 (923)
                        +|.+|. .|+||||+|+++|+.++|++|+++|++++.+|..|.|||++|+.
T Consensus       250 ~~in~~D~-~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~~  301 (301)
T d1sw6a_         250 NMLNAQDS-NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG  301 (301)
T ss_dssp             HTTTCCCT-TSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC
T ss_pred             cCccCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcCC
Confidence              578888 99999999999999999999999999999999999999999973

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=2.4e-24  Score=229.62  Aligned_cols=181  Identities=18%  Similarity=0.143  Sum_probs=102.5

Q ss_pred             cCCCCCC-CCCCCcHhHHHHHcCcHHHHHHHHhCCCcccccCCCCCchHHHHHHHcCCH-------HHHHHHHHCCCCCC
Q psy3899         535 GQDVNEP-DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL-------DSVVLLIQHGADPT  606 (923)
Q Consensus       535 ~~~~~~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~g~~-------~~v~~Ll~~g~~~~  606 (923)
                      +.++|.. |..|.||||+||..|+.++|++|+++|++++..+.. |+||||.|+..++.       ++++++.+   +++
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~-G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~  171 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNM-GESCLVKAVKSVNNYDSGTFEALLDYLYP---CLI  171 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTT-CCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGG
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcc-cccHHHHhhhcccchhhhhHHHHHHHHhh---hhh
Confidence            4455544 566666666666666666666666666666654433 66666666655431       23333322   344


Q ss_pred             CCCCCCChHHHHHHHcCc----HH--------HHHHHHHcC-CCCCccCCCCCcHHHHHHHhhCCcchHHHH-H--hcCC
Q psy3899         607 LMDSEGSTCIHQAAQFGH----TR--------IVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLL-I--TFGA  670 (923)
Q Consensus       607 ~~d~~g~t~Lh~A~~~~~----~~--------~v~~Ll~~g-~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~L-l--~~ga  670 (923)
                      .+|..|+||||.++..+.    ..        ++.++.+.+ .+.......+.++++.+.... .......+ +  ..+.
T Consensus       172 ~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  250 (301)
T d1sw6a_         172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER-KDSILENLDLKWIIAN  250 (301)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCSHHHHHHH
T ss_pred             hcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcc-hHHHHHHHhhHHHHhc
Confidence            455666666666654332    11        223333332 223333444444444433322 11111110 0  0122


Q ss_pred             CCcccccCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q psy3899         671 STTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLE  721 (923)
Q Consensus       671 ~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~a~  721 (923)
                      .+|.+|. .|+||||+|++.|+.++|++|+++|||++++|++|+|||++|+
T Consensus       251 ~in~~D~-~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         251 MLNAQDS-NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTTCCCT-TSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CccCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            3788898 9999999999999999999999999999999999999999985

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.2e-24  Score=198.16  Aligned_cols=121  Identities=28%  Similarity=0.314  Sum_probs=100.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCc
Q psy3899          21 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLD  100 (923)
Q Consensus        21 T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~  100 (923)
                      ++||.||..|+.++|+.|+++|++++.+|.+|+||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+..| +.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g-~~~   81 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN-NVQ   81 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT-CHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhh-HHH
Confidence            6788888888888888888888888888888888888888888888888888888888888888888888888888 488


Q ss_pred             hhHHHHhcCCCcccccccCCCcHHHHH--HHhCcHHHHHHHHhc
Q psy3899         101 PTRLLITFGASTTIQDKIHGNVALHWA--IYAKNHVAITTLVSH  142 (923)
Q Consensus       101 vv~lLl~~ga~~~~~d~~~g~T~L~~A--~~~g~~~iv~~Ll~~  142 (923)
                      ++++|+++|++++..+..+|.||+++|  +..|+.++|++|++.
T Consensus        82 ~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          82 VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            888888888888877653577776654  566888888888764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=2.6e-24  Score=194.01  Aligned_cols=107  Identities=25%  Similarity=0.251  Sum_probs=104.2

Q ss_pred             ChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCc
Q psy3899          53 STCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN  132 (923)
Q Consensus        53 ~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~  132 (923)
                      .|||++|++.|+.++|++|+++|+++|.+|.+|+||||+|+..|+ .+++++|+++|++++.+|. .|.||||+|+.+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~-~~~~~~ll~~g~din~~d~-~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQ-LEILEFLLLKGADINAPDK-HHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHST-TTHHHHHHHSSCTTTCCSS-SCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccc-cccccccccccceeeeccc-ccccchhhhhhcCc
Confidence            489999999999999999999999999999999999999999995 9999999999999999999 99999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCChHHHHH
Q psy3899         133 HVAITTLVSHTSSLEIPNAQGLTPFMLLE  161 (923)
Q Consensus       133 ~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~  161 (923)
                      .++|++|+++|+|++.+|.+|.||||+|.
T Consensus        81 ~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          81 VSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             CHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            99999999999999999999999999984

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.2e-24  Score=194.28  Aligned_cols=121  Identities=21%  Similarity=0.161  Sum_probs=113.4

Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCC-CcHHHHHHH
Q psy3899          51 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG-NVALHWAIY  129 (923)
Q Consensus        51 ~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g-~T~L~~A~~  129 (923)
                      .+.++||+||+.|+.++|++|+++|+++|.+|..|.||||+|+ .| +.+++++|+++|++++.+|. .| .||||+|++
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g-~~~~v~~Ll~~ga~~~~~~~-~~~~~~L~~A~~   78 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MG-SARVAELLLLHGAEPNCADP-ATLTRPVHDAAR   78 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TT-CHHHHHHHHTTTCCCCCCCT-TTCCCHHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cc-cccccccccccccccccccc-cccccccccccc
Confidence            4679999999999999999999999999999999999999664 67 49999999999999999998 55 579999999


Q ss_pred             hCcHHHHHHHHhcCCCCCCCCCCCCChHHHHHhhcCCCCCchhhhhHHHH
Q psy3899         130 AKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  179 (923)
Q Consensus       130 ~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~~~~~~v~~L~~  179 (923)
                      .|+.++|++|+++|++++.+|..|+||||+|+++|+.+     ++++|+.
T Consensus        79 ~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~-----~v~~Lls  123 (125)
T d1bi7b_          79 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRD-----VARYLRA  123 (125)
T ss_dssp             HTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHH-----HHHHHSS
T ss_pred             cccccccccccccccccccccCCCCCHHHHHHHcCCHH-----HHHHHHh
Confidence            99999999999999999999999999999999999999     9999864

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1e-22  Score=186.93  Aligned_cols=121  Identities=17%  Similarity=0.133  Sum_probs=112.8

Q ss_pred             hHHHHHHHhCcHHHHHHHHHCCCcccccCCCCCcHHHHHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcH
Q psy3899          54 TCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH  133 (923)
Q Consensus        54 TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~d~~g~TpL~~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~  133 (923)
                      ++||.||..|+.++|++|+++|+++|.+|.+|+||||+|+..|+ .+++++|+++|++++.+|. .|+||||+|+.+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~-~~~~~~ll~~g~~~~~~d~-~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH-TEIVKFLVQFGVNVNAADS-DGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTC-HHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccc-ccccccccccccccccccc-cCcccccccchhhHH
Confidence            68999999999999999999999999999999999999999995 9999999999999999999 999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCC-CCCChHHHH--HhhcCCCCCchhhhhHHHHHH
Q psy3899         134 VAITTLVSHTSSLEIPNA-QGLTPFMLL--EENIGAPWLGKATVDKITELK  181 (923)
Q Consensus       134 ~iv~~Ll~~ga~~~~~~~-~g~t~L~~A--~~~g~~~~~~~~~v~~L~~~~  181 (923)
                      ++|++|+++|++++..+. .|+||++++  .+.|+.+     ++++|++..
T Consensus        81 ~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~e-----iv~~L~~~~  126 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQ-----CSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCC-----HHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHH-----HHHHHHhHH
Confidence            999999999999998774 588987766  5678899     999998743

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=2.6e-22  Score=189.01  Aligned_cols=124  Identities=23%  Similarity=0.229  Sum_probs=114.3

Q ss_pred             ccHHHHHHHcCCHHHHHHHHHcCCCCCcc------CCCCChHHHHHHHh---CcHHHHHHHHHCCCcccccCCCCCcHHH
Q psy3899          20 ATPLHWATRQGHLDSVVLLIQHGADPTLM------DSEGSTCIHQAAQF---GHTRIVAYLVAKGINVNLQDRNGMTALM   90 (923)
Q Consensus        20 ~T~Lh~Aa~~g~~~~V~~Ll~~ga~~~~~------d~~g~TpLh~Aa~~---g~~~iv~~Ll~~ga~vn~~d~~g~TpL~   90 (923)
                      ...|..|++.++++.|..++..|++++..      +..|+||||+|++.   |+.++|++|+++|+++|.+|.+|+||||
T Consensus         7 l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh   86 (154)
T d1dcqa1           7 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccc
Confidence            34566888999999999999999988765      77899999999985   6789999999999999999999999999


Q ss_pred             HHHHhcCCCchhHHHHhcCCCcccccccCCCcHHHHHHHhCcHHHHHHHHhcCCC
Q psy3899          91 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS  145 (923)
Q Consensus        91 ~Aa~~g~~~~vv~lLl~~ga~~~~~d~~~g~T~L~~A~~~g~~~iv~~Ll~~ga~  145 (923)
                      +||..| +.+++++|+++|++++.+|. .|.||||+|++.|+.+++++|++.++.
T Consensus        87 ~A~~~~-~~~~v~~Ll~~gad~~~~d~-~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          87 YCCLTD-NAECLKLLLRGKASIEIANE-SGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cccccc-cccccccccccCccccccCC-CCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999 59999999999999999999 999999999999999999999998753

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=5e-20  Score=173.20  Aligned_cols=120  Identities=24%  Similarity=0.238  Sum_probs=88.3

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCC------CCCCChHHHHHHHc---CcHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Q psy3899         583 LHWATRQGHLDSVVLLIQHGADPTLM------DSEGSTCIHQAAQF---GHTRIVAYLVAKGINVNLQDRNGMTALMWSA  653 (923)
Q Consensus       583 Lh~A~~~g~~~~v~~Ll~~g~~~~~~------d~~g~t~Lh~A~~~---~~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~a~  653 (923)
                      |..|++.+++..+..++..|+|++..      +..|+||||+|++.   +..+++++|+++|++++.+|..|+||||+|+
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~   89 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC   89 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccccc
Confidence            34556667766666666666665543      55677777777764   4567777777777777777777888888777


Q ss_pred             HhhCCcchHHHHHhcCCCCcccccCCCChHHHHHHHcCCHHHHHHHHHCCC
Q psy3899         654 YKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS  704 (923)
Q Consensus       654 ~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~~~~~~v~~Ll~~ga  704 (923)
                      ..| +.+++++|+++|++++.+|. .|+||||+|+..|+.+++++|++.++
T Consensus        90 ~~~-~~~~v~~Ll~~gad~~~~d~-~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          90 LTD-NAECLKLLLRGKASIEIANE-SGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ccc-cccccccccccCccccccCC-CCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            776 77778888888888877777 78888888888888888888877765