Psyllid ID: psy3926

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510--
Protein Sequence
MTEELNAAKELSELNAKLNPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPDVEREESRKQPKNPVFSNIDFSGPRDSDSKNVESSNGSDSDSTPNLFPSANKSSNIFPSADKSSNLFPTADKSSHLFPIADKSSNLFPSADKSSNIFSSSSKPRNVFPSGLFPSANVSSNIFASSDRTLPEPHISWSFPAIPLSSIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKELSELNAKLNPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPDVEREESRKQPKNPVFSNIDFSGPR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHcccccccEEEEEEEEcccccccccHHHHHHHHHHHccEEEEEEcccccccEEEEEccHHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccccccHHHHHHHHHccccccEEEEccccccEEEEEEccHHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcccccccccccEEEEEEEEcccccccccHHHHHHHHHHcccEEEEEEEcccccEEEEEEccHHHHHHHHHHHccccccccEEEEEcccccccccccccccccEEEcEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccEEHHHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHcEEEEEEEccccccccccHHHHHHHHHHHccEEEEEEEcccccEEEEEEccHHHHHHHHHHHcccccccEEEEEccccccccccccccccccccccEEcccc
Coil and Loop (DISEMBL)
MTEELNAAKELSELNaklnpenyrlrirwkssstdtdvytRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYelglpncpltlnylnpdvereesrkqpknpvfsnidfsgprdsdsknvessngsdsdstpnlfpsankssnifpsadkssnlfptadksshlfpiadkssnlfpsadkssnifsssskprnvfpsglfpsanvssnifassdrtlpephiswsfpaiplssimadikdldLYGLLELTIDCSEQDIRSAYRKKAlkchpdknpddkkAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENerykgykvnksEEEILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKELSELNaklnpenyrlrirwkssstdtdvytRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYelglpncpltlnylnpdvereesrkqpknpvfsnidfsgpr
Flexible Loop (DISEMBL)
MTEELNAAKELSelnaklnpenyrlrirwkssstdtdvytrESLTKifskygkinilvispkKRGSALLEFEHADSARRAKLYelglpncpltLNYLNPDVEreesrkqpknpvfsnidfsgprdsdSKNVEssngsdsdstpnlfPSANKSSNIFPSADKSSNLFPTADKSSHLFPIADKSSNLFPSADKSSNIFSSSSKPRNVFPSGLFPSANVSSNIFASSDRTLPEPHISWSFPAIPLSSIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKalkchpdknpddkKAIETFHLLSKAIEVLLDKSARAaydsvirrkeevkirnskldatrkkfkedlerrekeaenerykgykvnkseeeiLQQEIDRLRKEGSIRLQEEIKLMTEELNAAKELSelnaklnpenyrlrirwkssstdtdvytrESLTKifskygkinilvispkKRGSALLEFEHADSARRAKLYelglpncpltLNYLNPDVEreesrkqpknpvfsnidfsgpr
Low Complexity Region (SEG)
MTEELNAAKELSELNAKLNPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPDVEREESRKQPKNPVFSNIDFSGPRDSDSKNVESSNGSDSDSTPNLFPSANKSSNIFPSADKSSNLFPTADKSSHLFPIADKSSNLFPsadkssnifssssKPRNVFPSGLFPSANVSSNIFASSDRTLPEPHISWSFPAIPLSSIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKELSELNAKLNPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPDVEREESRKQPKNPVFSNIDFSGPR
Disordered region (IsUnstruct)
**********************YRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLN************************************************************************************************************************************PHISWSFPAIPLSSIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALK***********AIETFHLLSKAIEVLLDKSARAAYDSVI*******************************************************************************************NYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLN**************************
Disordered Region (DISOPRED)
*************************RIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLN******************************************************************************H*****************************************V***********************IPLSSIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDS************************************************************************************************LRIRWKSSS****VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLN*****************************
Disordered Region (DISEMBL)
********KELSELNAKLNPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPD**********KNPVFSNIDFSG********************PNLFPSANKSSNIFPSADKSSNLFPTADKSSHLFPIADKSSNLFPSADKSSNIFSSSSKPRNVFPSGLFPSANVSSNIFASSDRTLPEPHISWSFPAIPLSSIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFK**************YKGYKVNKSEEEILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKELSELNAKLNPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPD**********KNPVFSNIDFSGPR
Disordered Region (DISPRO)
***************AKLNPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPD**************FSNI**SGPRD******************************************************************************NVFPSGLFPSANVSSNIFASSDRTLPEPHISWSFPAIPLSSIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENER*******KSEEEILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKELS****KLNPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNP*************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTEELNAAKELSELNAKLNPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPDVEREESRKQPKNPVFSNIDFSGPRDSDSKNVESSNGSDSDSTPNLFPSANKSSNIFPSADKSSNLFPTADKSSHLFPIADKSSNLFPSADKSSNIFSSSSKPRNVFPSGLFPSANVSSNIFASSDRTLPEPHISWSFPAIPLSSIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEVKIRxxxxxxxxxxxxxxxxxxxxxxxxxxxxGxxxxxxxxxxxxxxxxxxxxxGxxxxxxxxxxxxxxxxxxxxxSELNAKLNPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPDVEREESRKQPKNPVFSNIDFSGPR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	512	2.2.26 [Sep-21-2011]
Q2KI83	304	DnaJ homolog subfamily C	yes	N/A	0.470	0.792	0.392	7e-40
Q91WT4	303	DnaJ homolog subfamily C	yes	N/A	0.443	0.749	0.356	2e-37
Q9NVM6	304	DnaJ homolog subfamily C	yes	N/A	0.443	0.746	0.356	3e-36
Q9P7C6	289	Pre-mRNA-splicing factor	yes	N/A	0.402	0.712	0.336	4e-19
Q5FGQ8	382	Chaperone protein DnaJ OS	yes	N/A	0.123	0.164	0.571	2e-11
Q5HCG4	382	Chaperone protein DnaJ OS	yes	N/A	0.123	0.164	0.571	2e-11
C5BQ32	376	Chaperone protein DnaJ OS	yes	N/A	0.123	0.167	0.571	3e-11
A6QBG7	377	Chaperone protein DnaJ OS	yes	N/A	0.130	0.177	0.462	5e-11
A6Q486	373	Chaperone protein DnaJ OS	yes	N/A	0.128	0.176	0.5	5e-10
Q2GI75	380	Chaperone protein DnaJ OS	yes	N/A	0.123	0.165	0.523	5e-10

>sp|Q2KI83|DJC17_BOVIN DnaJ homolog subfamily C member 17 OS=Bos taurus GN=DNAJC17 PE=2 SV=1

 Score =  165 bits (418), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 97/247 (39%), Positives = 152/247 (61%), Gaps = 6/247 (2%)

Query: 244 SIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIE 303
           ++  ++  +DLY LL +     +++++ AYR+KAL CHPDKNPD+ +A E FH LS+A+E
Sbjct: 2   AVTKELLQMDLYALLGIEEKAEDKEVKKAYRQKALSCHPDKNPDNPRAAELFHQLSQALE 61

Query: 304 VLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSE 363
           VL D +ARAAYD V + K++   R  KLD  RKK K DLE RE++A+       +     
Sbjct: 62  VLTDAAARAAYDKVRKAKKQAAERTQKLDERRKKVKLDLEARERQAQA-LGSEEEEESGS 120

Query: 364 EEILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKELSELNAKLNPEN-----YRLRIRWK 418
              L+QEI+RLR+EGS +L+E+ +L+ E++   +E        NPEN      +L+ + K
Sbjct: 121 ARTLEQEIERLREEGSRQLEEQQRLIREQIRQEQEQRLTGMAKNPENKETPKLKLKWKSK 180

Query: 419 SSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNC 478
             +     Y+R+ L ++F KYG++  LV+S KK G+A++EF    +A  A   E+GL + 
Sbjct: 181 KEAESQGGYSRDVLLQLFQKYGEVLNLVLSSKKAGTAVVEFATVKAAELAVQNEVGLVDN 240

Query: 479 PLTLNYL 485
           PL +++L
Sbjct: 241 PLKISWL 247

Bos taurus (taxid: 9913)

>sp|Q91WT4|DJC17_MOUSE DnaJ homolog subfamily C member 17 OS=Mus musculus GN=Dnajc17 PE=2 SV=2

 Score =  157 bits (397), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/261 (35%), Positives = 153/261 (58%), Gaps = 34/261 (13%)

Query: 244 SIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIE 303
           ++  ++  +DLY LL +    ++++++ AYR+KAL CHPDKNPD+ +A E FH LS+A+E
Sbjct: 2   AVTKELLQMDLYALLGIEEKAADKEVKKAYRQKALSCHPDKNPDNPRAAELFHQLSQALE 61

Query: 304 VLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSE 363
           VL D +ARAAYD V + K++   R  +LD  RKK K DLE RE++A+    +  + ++S 
Sbjct: 62  VLTDAAARAAYDKVRKAKKQAAERTQRLDENRKKVKLDLEARERQAQAHGSEEEEESRS- 120

Query: 364 EEILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKELSELNAKLNPENYRLRIRWKSSSTD 423
              L+QEI RLR+EGS +L+E+ +L+ E++   +E               R+R ++ +T+
Sbjct: 121 ATTLEQEIARLREEGSRQLEEQQRLIQEQIRQDRE--------------QRLRGRTENTE 166

Query: 424 -------------------TDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADS 464
                                 Y+R+ L ++  KYG++  LV+S KK G+A++EF    +
Sbjct: 167 GKGTPKLKLKWKCKKEDESQGGYSRDVLLRLLQKYGEVLNLVLSRKKAGNAIVEFATVRA 226

Query: 465 ARRAKLYELGLPNCPLTLNYL 485
           A  A   E+GL + PL +++L
Sbjct: 227 AELAVRNEVGLADNPLKVSWL 247

Mus musculus (taxid: 10090)

>sp|Q9NVM6|DJC17_HUMAN DnaJ homolog subfamily C member 17 OS=Homo sapiens GN=DNAJC17 PE=1 SV=1

 Score =  153 bits (386), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/261 (35%), Positives = 155/261 (59%), Gaps = 34/261 (13%)

Query: 244 SIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIE 303
           ++  ++  +DLY LL +    ++++++ AYR+KAL CHPDKNPD+ +A E FH LS+A+E
Sbjct: 2   AVTKELLQMDLYALLGIEEKAADKEVKKAYRQKALSCHPDKNPDNPRAAELFHQLSQALE 61

Query: 304 VLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSE 363
           VL D +ARAAYD V + K++   R  KLD  RKK K DLE RE++A+ +  +  + ++S 
Sbjct: 62  VLTDAAARAAYDKVRKAKKQAAERTQKLDEKRKKVKLDLEARERQAQAQESEEEEESRS- 120

Query: 364 EEILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKELSELNAKLNPENYRLRIRWKSSSTD 423
              L+QEI+RLR+EGS +L+E+ +L+ E++   ++               R+R K+ +T+
Sbjct: 121 TRTLEQEIERLREEGSRQLEEQQRLIREQIRQERD--------------QRLRGKAENTE 166

Query: 424 TD-------------------VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADS 464
                                 Y+++ L ++  KYG++  LV+S KK G+A++EF    +
Sbjct: 167 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKA 226

Query: 465 ARRAKLYELGLPNCPLTLNYL 485
           A  A   E+GL + PL +++L
Sbjct: 227 AELAVQNEVGLVDNPLKISWL 247

Homo sapiens (taxid: 9606)

>sp|Q9P7C6|CWC23_SCHPO Pre-mRNA-splicing factor cwf23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf23 PE=1 SV=2

 Score = 96.7 bits (239), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 17/223 (7%)

Query: 252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSAR 311
           +D Y LL +  D  +Q+I  A+RK +LK HPDKNP+D KA E FH+L  A   L+D   R
Sbjct: 8   IDYYELLGINEDAQDQEIHRAWRKTSLKYHPDKNPNDPKAAEKFHMLQLAYNALIDVQLR 67

Query: 312 AAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEI 371
            AYDS    K   K R    +  RK   +DL  RE++     Y   +  ++E + LQ+++
Sbjct: 68  KAYDSERFAKLARKRREEAFNFQRKSMVDDLRERERQF----YDSLEKKENERDRLQEKL 123

Query: 372 DRLRKE-GSIRLQEEIKLMTEELNAAKELSEL-NAKLNPENYRLRIRWKSSSTDT--DVY 427
             L++E  ++R Q E +L  E+  + +   E  ++K++  +  +RIRWK    D   D Y
Sbjct: 124 RALQEESANLRRQRENRLREEQEQSKRRKQETPSSKISELDRSIRIRWKRKYADQVNDAY 183

Query: 428 TRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSA 465
            R     I+S +G +  +VI       KK   +++ FE   SA
Sbjct: 184 LR----SIYSSFGTLQNVVIQKDISKEKKYVYSIIVFETLSSA 222

Involved in pre-mRNA splicing. May be involved in endoplasmic reticulum-associated protein degradation (ERAD) and required for growth at low and high temperatures.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5FGQ8|DNAJ_EHRRG Chaperone protein DnaJ OS=Ehrlichia ruminantium (strain Gardel) GN=dnaJ PE=3 SV=1

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 45/63 (71%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y LL L+ + + ++I+ AYRK ALK HPDKNP DK A E F  LS+A +VL+DK  RA
Sbjct: 5   DYYDLLGLSKNATPEEIKKAYRKMALKYHPDKNPGDKAAEEKFKELSEAYDVLIDKDKRA 64

Query: 313 AYD 315
           AYD
Sbjct: 65  AYD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Ehrlichia ruminantium (strain Gardel) (taxid: 302409)

>sp|Q5HCG4|DNAJ_EHRRW Chaperone protein DnaJ OS=Ehrlichia ruminantium (strain Welgevonden) GN=dnaJ PE=3 SV=1

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 45/63 (71%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y LL L+ + + ++I+ AYRK ALK HPDKNP DK A E F  LS+A +VL+DK  RA
Sbjct: 5   DYYDLLGLSKNATPEEIKKAYRKMALKYHPDKNPGDKAAEEKFKELSEAYDVLIDKDKRA 64

Query: 313 AYD 315
           AYD
Sbjct: 65  AYD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Ehrlichia ruminantium (strain Welgevonden) (taxid: 254945)

>sp|C5BQ32|DNAJ_TERTT Chaperone protein DnaJ OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=dnaJ PE=3 SV=1

 Score = 70.5 bits (171), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 43/63 (68%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L +  D SEQD++ AYRK A+K HPD+NPDD  A E F   S+A EVL DK  RA
Sbjct: 5   DYYEVLGVARDVSEQDLKKAYRKVAMKFHPDRNPDDASAEEKFKEASEAYEVLSDKQKRA 64

Query: 313 AYD 315
           AYD
Sbjct: 65  AYD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Teredinibacter turnerae (strain ATCC 39867 / T7901) (taxid: 377629)

>sp|A6QBG7|DNAJ_SULNB Chaperone protein DnaJ OS=Sulfurovum sp. (strain NBC37-1) GN=dnaJ PE=3 SV=1

 Score = 69.7 bits (169), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 48/67 (71%)

Query: 249 IKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDK 308
           + ++D Y +LE++ DCS  +++ AYRK ALK HPD+NPDD++A E F ++++A +VL D 
Sbjct: 1   MSEMDYYEVLEVSRDCSGAELKKAYRKLALKYHPDRNPDDQEAEEKFKIVNEAYQVLSDD 60

Query: 309 SARAAYD 315
             R  YD
Sbjct: 61  EKRTIYD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Sulfurovum sp. (strain NBC37-1) (taxid: 387093)

>sp|A6Q486|DNAJ_NITSB Chaperone protein DnaJ OS=Nitratiruptor sp. (strain SB155-2) GN=dnaJ PE=3 SV=1

 Score = 66.6 bits (161), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 47/66 (71%)

Query: 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSA 310
           D+D Y LLE+  + S ++I+ AYRK ALK HPD+NPD+ +A E F L+++A +VL D+  
Sbjct: 3   DIDYYELLEVDRNASFEEIKKAYRKLALKYHPDRNPDNPEAEEKFKLINEAYQVLSDEEK 62

Query: 311 RAAYDS 316
           RA YD 
Sbjct: 63  RALYDQ 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Nitratiruptor sp. (strain SB155-2) (taxid: 387092)

>sp|Q2GI75|DNAJ_EHRCR Chaperone protein DnaJ OS=Ehrlichia chaffeensis (strain Arkansas) GN=dnaJ PE=3 SV=1

 Score = 66.2 bits (160), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 45/63 (71%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y LL ++   + ++I+ AYRK ALK HPDKNP +K+A E F  LS+A +VL+D+  RA
Sbjct: 5   DYYDLLGVSKSATPEEIKKAYRKMALKYHPDKNPGNKEAEEKFKELSEAYDVLIDQDKRA 64

Query: 313 AYD 315
           AYD
Sbjct: 65  AYD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Ehrlichia chaffeensis (strain Arkansas) (taxid: 205920)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	512
157103359	300	hypothetical protein AaeL_AAEL000042 [Ae	0.470	0.803	0.477	3e-57
312378028	305	hypothetical protein AND_10507 [Anophele	0.470	0.790	0.504	2e-55
118780738	308	AGAP003825-PA [Anopheles gambiae str. PE	0.466	0.775	0.468	7e-54
378466099	289	DnaJ-15 [Bombyx mori]	0.457	0.809	0.477	4e-51
357610892	293	hypothetical protein KGM_10805 [Danaus p	0.451	0.788	0.477	4e-50
91079022	286	PREDICTED: similar to DnaJ (Hsp40) homol	0.455	0.814	0.458	5e-50
170044161	305	conserved hypothetical protein [Culex qu	0.470	0.790	0.460	3e-49
242024720	294	conserved hypothetical protein [Pediculu	0.447	0.778	0.461	3e-47
340714558	291	PREDICTED: dnaJ homolog subfamily C memb	0.441	0.776	0.470	5e-47
194902094	299	GG17232 [Drosophila erecta] gi|190652289	0.458	0.785	0.422	2e-46

>gi|157103359|ref|XP_001647945.1| hypothetical protein AaeL_AAEL000042 [Aedes aegypti] gi|108884777|gb|EAT49002.1| AAEL000042-PA [Aedes aegypti]

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 118/247 (47%), Positives = 169/247 (68%), Gaps = 6/247 (2%)

Query: 246 MADIK---DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAI 302
           M D+K   ++DLYGLL + I  +E ++R AYRKKAL+CHPDKNPD+ KA E F  LSKA+
Sbjct: 1   MVDVKKFSEIDLYGLLGIEIGATEAEVRKAYRKKALQCHPDKNPDNPKAAELFQELSKAL 60

Query: 303 EVLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKS 362
           E+L+D SARAAYD ++  K+  ++R  +LD+ R+K KEDLE RE++A      GYKV K+
Sbjct: 61  EILIDASARAAYDKLLSAKKAAQLRTQQLDSKRQKLKEDLEERERKAREAAKGGYKVQKT 120

Query: 363 EEEILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKEL-SELNAKLNPENYRLRIRWKSSS 421
            EE+ Q+E +RLRKEGS  ++EE +LM ++L   K +  +  +  +P  +R++I+WK+  
Sbjct: 121 PEELFQEEFERLRKEGSKLIEEEQELMRQQLREEKAMQGKGQSSWDPSKHRIKIKWKAGK 180

Query: 422 TDTD--VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCP 479
            D +   YT+E L K  SKYG IN+LV+SPKK GSAL+EF+  D+A  A  YE G  + P
Sbjct: 181 DDPENGGYTQEILNKFLSKYGDINVLVMSPKKNGSALVEFKTQDAAEMAVSYEQGRLDNP 240

Query: 480 LTLNYLN 486
            +L ++ 
Sbjct: 241 CSLEWIG 247

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312378028|gb|EFR24710.1| hypothetical protein AND_10507 [Anopheles darlingi]

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 126/250 (50%), Positives = 165/250 (66%), Gaps = 9/250 (3%)

Query: 246 MADIK---DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAI 302
           M D+K   D DLYGL E+ I  +EQ+IR AYRKKAL+CHPDKNPD+ KA + F  LSKA+
Sbjct: 1   MVDVKKFSDTDLYGLFEVDIGATEQEIRKAYRKKALQCHPDKNPDNPKAAQLFQELSKAL 60

Query: 303 EVLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKV--N 360
           E+LLD SARAAYD ++  K+  K+R  +LD  R+K K DLE RE+ A  E   GYK   N
Sbjct: 61  EILLDTSARAAYDKLLNAKKAAKLRTKQLDGKRQKLKADLEERERRAREEATGGYKTASN 120

Query: 361 KSEEEILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKELSELNAK--LNPENYRLRIRWK 418
           K+ EE+ Q+E DRLRKEGS  +QEE +LM ++L     L +  A    +P  +R++IRWK
Sbjct: 121 KTPEELFQEEFDRLRKEGSKLIQEEQELMRQQLQEELRLIQTAAAPSWDPSQHRVKIRWK 180

Query: 419 SSSTDT--DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLP 476
           +  TDT    YT E L K  +KYG +N LV+SP+K GSAL+EF+  D+A  A  YE G  
Sbjct: 181 ADKTDTGNGGYTEEILRKFLNKYGDLNALVMSPRKNGSALVEFKQKDAAEMAVTYEKGRL 240

Query: 477 NCPLTLNYLN 486
           + P TL ++ 
Sbjct: 241 DNPCTLEWVG 250

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118780738|ref|XP_310387.5| AGAP003825-PA [Anopheles gambiae str. PEST] gi|116131006|gb|EAA06109.3| AGAP003825-PA [Anopheles gambiae str. PEST]

 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 118/252 (46%), Positives = 165/252 (65%), Gaps = 13/252 (5%)

Query: 246 MADIK---DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAI 302
           M D+K   D+D+YGLLE+ I  +EQ+IR AYRKKAL+CHPDKNPD+ KA + F  LSKA+
Sbjct: 1   MVDVKKFSDIDIYGLLEVDIAATEQEIRKAYRKKALQCHPDKNPDNPKAAQLFQELSKAL 60

Query: 303 EVLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKV--N 360
           E+L+D SARAAYD ++  K+  ++R  +LD+ R+K K DLE RE++A+     GYK   +
Sbjct: 61  EILMDVSARAAYDRLLNAKKAAQLRTKQLDSKRQKLKADLEERERQAKEAASGGYKTASS 120

Query: 361 KSEEEILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKELSELNAK----LNPENYRLRIR 416
           K+ EE+ Q+E  RLRKEGS  +QEE +LM  +L   +EL  +        +P  +R++IR
Sbjct: 121 KTPEELFQEEFKRLRKEGSKLIQEEQELMRRQLQ--EELRMMQTATAPSWDPAQHRIKIR 178

Query: 417 WKSSSTDT--DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG 474
           WK+   D     YT + L K  SKYG +N LV+SP+K GSAL+EF   D+A  A  +E G
Sbjct: 179 WKADRGDAANGGYTEDVLRKFLSKYGDLNALVMSPRKNGSALVEFRAKDAAEMAVTFEKG 238

Query: 475 LPNCPLTLNYLN 486
             + P TL ++ 
Sbjct: 239 RLDNPCTLEWVG 250

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|378466099|gb|AFC01229.1| DnaJ-15 [Bombyx mori]

 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 160/241 (66%), Gaps = 7/241 (2%)

Query: 248 DIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLD 307
           +I+++DLY +L+L I  +E +I+ AYRKKAL+CHPDKNPDD KA ETFH LS+A+E+L D
Sbjct: 5   NIEEIDLYAVLDLQITATESEIKKAYRKKALQCHPDKNPDDPKAAETFHELSQALEILTD 64

Query: 308 KSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEIL 367
            SARAAYD V+R K   K+R+ +LD+ R+K KEDLE+RE+EA +    G   N ++ + L
Sbjct: 65  TSARAAYDKVLRAKASAKLRHQELDSKRQKLKEDLEKREREAAS----GTHTNLTDSQRL 120

Query: 368 QQEIDRLRKEGSIRLQEEIKLMTEELNAAKELSELNAKLNPENYRLRIRWKSSSTDTD-- 425
            +EI+RL++EGS  L EE + M  E+  + E  +     +P   R++I+WK   TD +  
Sbjct: 121 AKEIERLQREGSRLLLEEQQRMKNEIQKSVERMK-EPVWDPSLNRIKIKWKVDKTDQNNS 179

Query: 426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYL 485
            Y   +L K   KYG I  LVIS K RGSAL+EF   ++A  A   E GLP+ PLTL ++
Sbjct: 180 TYDEATLRKFLKKYGDIVALVISSKSRGSALIEFATKEAAEMAVQLEKGLPDNPLTLKWV 239

Query: 486 N 486
           N
Sbjct: 240 N 240

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357610892|gb|EHJ67197.1| hypothetical protein KGM_10805 [Danaus plexippus]

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 116/243 (47%), Positives = 163/243 (67%), Gaps = 12/243 (4%)

Query: 249 IKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDK 308
           I+D+DLY +L++ I  ++ +I+ AYRKKAL+CHPDKNPD+ KA ETFH LS A+E+L DK
Sbjct: 6   IEDVDLYAILDIQITATDSEIKKAYRKKALQCHPDKNPDNPKAAETFHELSHALEILTDK 65

Query: 309 SARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQ 368
           +ARAAYD V+R K   K+R+ +LD+ R+K KEDLERRE+EA      G K N ++E+ L 
Sbjct: 66  AARAAYDKVLRAKAAAKLRHQELDSKRQKLKEDLERREREAA---LGGSKDNLTDEQKLA 122

Query: 369 QEIDRLRKEGSIRLQEEIKLMTEELN-AAKELSE--LNAKLNPENYRLRIRWKSSSTD-- 423
           +EI RL++EGS  LQEE + M EE+  + K LSE   ++ LN    R++I WK+  +D  
Sbjct: 123 EEIKRLQREGSRLLQEEQQRMKEEIQKSMKNLSEPVWDSSLN----RIKISWKAEKSDPG 178

Query: 424 TDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLN 483
              Y   +L     KYG I  L++SP K+GSAL+EF   +++  A  +E GL   PLTL 
Sbjct: 179 NGGYNETNLRTFLKKYGPITALIMSPAKKGSALVEFGTKEASEMAVEFEKGLQENPLTLK 238

Query: 484 YLN 486
           +L+
Sbjct: 239 WLH 241

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079022|ref|XP_974891.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 17 [Tribolium castaneum] gi|270003671|gb|EFA00119.1| hypothetical protein TcasGA2_TC002935 [Tribolium castaneum]

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 111/242 (45%), Positives = 169/242 (69%), Gaps = 9/242 (3%)

Query: 249 IKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDK 308
           I+DLDLY +LE+    +  DI+ AYRKKAL+CHPDKNPD+  A + FH LS+ +EVL+D 
Sbjct: 6   IEDLDLYEILEIETTSTVADIKKAYRKKALQCHPDKNPDNPNAAKEFHQLSRILEVLIDA 65

Query: 309 SARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQ 368
           +AR AYD+V++ ++E  IR+ +LD+ R+K KEDLE RE+ A       YK  KS +E L+
Sbjct: 66  TARKAYDAVLKGRKEAAIRHKELDSKRRKLKEDLEARERRA----AANYKT-KSADEKLK 120

Query: 369 QEIDRLRKEGSIRLQEEIKLMTEELNAAKELSELNA-KLNPENYRLRIRWKSSSTDT--D 425
           +EI+RLRKEGS +++EE++ + +E+   ++ ++L+A K +  NYR++I+W  +  DT   
Sbjct: 121 EEIERLRKEGSKQVEEELERIRQEV-LEEQKAQLDANKCSGANYRIKIKWNVAKDDTTNG 179

Query: 426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYL 485
            Y+ E+L +  SKYG +  LV+S K+ G+AL+EFE  ++A  A   E+GLP+ PL L ++
Sbjct: 180 GYSHENLHRFLSKYGNVTALVLSQKRMGTALVEFEARNAAEMAVEMEVGLPSNPLKLEWV 239

Query: 486 NP 487
           NP
Sbjct: 240 NP 241

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170044161|ref|XP_001849725.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167867422|gb|EDS30805.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 116/252 (46%), Positives = 162/252 (64%), Gaps = 11/252 (4%)

Query: 246 MADIK---DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAI 302
           M D+K   ++DLYGLL   I  +E +IR AYRKKAL+CHPDKNPD+ KA E F  LSKA+
Sbjct: 1   MVDVKKFSEIDLYGLLGAEISATEAEIRKAYRKKALQCHPDKNPDNPKAAELFQELSKAL 60

Query: 303 EVLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENE-RYKGYKVNK 361
           E+LLD SAR+AYD ++  K+  ++R  +LD+ R+K K DLE RE+ A      K YKVNK
Sbjct: 61  EILLDASARSAYDKLLNAKKAAQLRTQQLDSKRQKLKNDLEERERRAREAGSGKAYKVNK 120

Query: 362 SEEEILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKELSELNAKLNP----ENYRLRIRW 417
           + EE+ Q+E +RLRKEGS  ++EE +LM ++L   ++  +  +   P      +R++I+W
Sbjct: 121 TPEELFQEEFERLRKEGSKLIEEEQELMRQQLREERDEMQKGSGGKPSWDSSQHRIKIKW 180

Query: 418 KSSSTD---TDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG 474
           K    D      Y++E L K  SKYG IN+LV+SPKK GSAL+EF   ++A  A  YE G
Sbjct: 181 KVEKGDEANNGGYSQEVLQKFLSKYGDINVLVMSPKKSGSALVEFRTQEAAEMAVSYEQG 240

Query: 475 LPNCPLTLNYLN 486
             + P  L ++ 
Sbjct: 241 RLDNPCKLEWIG 252

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242024720|ref|XP_002432774.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212518283|gb|EEB20036.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 113/245 (46%), Positives = 154/245 (62%), Gaps = 16/245 (6%)

Query: 252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSAR 311
           +DLY L  LTI+ S  +IR+AYRKKALKCHPDKNPD+ KA E F  L+ A+E+LLD+SAR
Sbjct: 9   VDLYELFGLTINASLNEIRTAYRKKALKCHPDKNPDNPKAAELFVQLTDALEILLDESAR 68

Query: 312 AAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEI 371
           AAY+ ++  KE  +IR+  LD  RKKFKEDLE R    E   +   K  K+EEE L+ EI
Sbjct: 69  AAYNKLLEAKEAARIRHQHLDEKRKKFKEDLEAR----ETAHFAKIKKQKTEEEKLKDEI 124

Query: 372 DRLRKEGSIRLQEEIKLMTEELNAAKELSELNAKLN-----PENYRLRIRWKSSSTDTD- 425
            RL+KEG+  +QEEIKL+ EE++      EL + +N        Y++ I WK    D + 
Sbjct: 125 ARLQKEGAKLVQEEIKLLQEEIS-----RELGSDVNNLTEDGSRYKIIIEWKGEKNDGEN 179

Query: 426 -VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNY 484
             Y  + L +IF KYG +  +V+S KK+G  L+EF+   +A  A   ELG  N PL L +
Sbjct: 180 GGYNEDVLNRIFKKYGDVVAVVVSTKKKGQGLIEFKEKRAAELAMKIELGFMNNPLKLKW 239

Query: 485 LNPDV 489
           L+ ++
Sbjct: 240 LDKNM 244

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714558|ref|XP_003395794.1| PREDICTED: dnaJ homolog subfamily C member 17-like [Bombus terrestris]

 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 111/236 (47%), Positives = 148/236 (62%), Gaps = 10/236 (4%)

Query: 252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSAR 311
           +DLY L+ +    S Q+I+ AYRKKAL CHPDKNPD+ KA E FH LS+A+E+L+D SAR
Sbjct: 1   MDLYELIGIERTASVQEIKKAYRKKALHCHPDKNPDNPKAAELFHELSRALEILIDTSAR 60

Query: 312 AAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEI 371
           AAYD VI  K + K+R  + D  RKK KEDLE RE       +    +N ++ E LQ EI
Sbjct: 61  AAYDKVINAKYQQKLRAKEFDLNRKKLKEDLEARE-------FAEKSLN-TDNEKLQAEI 112

Query: 372 DRLRKEGSIRLQEEIKLMTEELNAAKELSELNAKLNPENYRLRIRWKS--SSTDTDVYTR 429
           +RLRKEGS ++QEEI LM        +     ++ N ++YRL+++WKS  + T+   Y  
Sbjct: 113 ERLRKEGSKQVQEEIALMNRHFEKQSKAVYKESQTNSDSYRLKVKWKSHKNQTNNGGYDY 172

Query: 430 ESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYL 485
            +L +IFSKYGKI  LVIS  + G AL+E++    A  A  YE+GL   PL L  L
Sbjct: 173 NTLYRIFSKYGKIIALVISSTREGRALVEYQKRSDAEMALNYEIGLVQYPLKLQKL 228

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194902094|ref|XP_001980586.1| GG17232 [Drosophila erecta] gi|190652289|gb|EDV49544.1| GG17232 [Drosophila erecta]

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 103/244 (42%), Positives = 161/244 (65%), Gaps = 9/244 (3%)

Query: 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSA 310
           D++LY LL ++++  + +IR AYRKKAL CHPDKNPD  +A+E+FH LSKA+E+L D+SA
Sbjct: 8   DVNLYDLLGISLEADQNEIRKAYRKKALDCHPDKNPDSPQAVESFHELSKALEILTDESA 67

Query: 311 RAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGY---KVNKSEEEIL 367
           RAAYD V++ K+  ++R+ +LD  R+K K++LE RE+ A ++  K      V KS+EE+L
Sbjct: 68  RAAYDKVLKAKKAAELRSRQLDGKRQKLKQELEERERAALHKLAKSQPYSTVAKSDEEVL 127

Query: 368 QQEIDRLRKEGSIRLQEEIKLMTEEL---NAAKE-LSELNAKLNPENYRLRIRWKSSSTD 423
           Q++I+RLR+EGS  L+EE + M E+    +A K+ L +  A+ +   +R++++WK+ S  
Sbjct: 128 QEQIERLRREGSRLLEEEQRAMQEQFRRNHAEKQKLQQQPAQFDSAQHRIKMKWKAESGQ 187

Query: 424 TDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLN 483
              YT+E L K   KYG +  LV++ K+RG A++E    ++      YE G P  PL   
Sbjct: 188 D--YTQEELLKYLKKYGDVVALVVNSKRRGRAMVELSTREACDMVLAYEKGDPAKPLHFE 245

Query: 484 YLNP 487
           ++ P
Sbjct: 246 WVTP 249

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	512
FB|FBgn0037882	299	CG17187 [Drosophila melanogast	0.476	0.816	0.403	5.4e-47
UNIPROTKB|E2RGH7	304	DNAJC17 "Uncharacterized prote	0.468	0.789	0.407	1.2e-44
UNIPROTKB|Q2KI83	304	DNAJC17 "DnaJ homolog subfamil	0.470	0.792	0.404	3.9e-44
ZFIN|ZDB-GENE-040426-894	307	dnajc17 "DnaJ (Hsp40) homolog,	0.457	0.762	0.414	1.7e-43
UNIPROTKB|F1SST1	304	DNAJC17 "Uncharacterized prote	0.496	0.835	0.384	2.2e-43
UNIPROTKB|Q9NVM6	304	DNAJC17 "DnaJ homolog subfamil	0.513	0.865	0.372	2.2e-43
UNIPROTKB|E1C0R0	304	DNAJC17 "Uncharacterized prote	0.488	0.822	0.399	5.7e-43
MGI|MGI:1916658	303	Dnajc17 "DnaJ (Hsp40) homolog,	0.515	0.871	0.373	1.5e-42
RGD|1308015	303	Dnajc17 "DnaJ (Hsp40) homolog,	0.515	0.871	0.366	3.2e-42
RGD|1565752	303	RGD1565752 "similar to RIKEN c	0.519	0.877	0.349	9.9e-39

FB|FBgn0037882 CG17187 [Drosophila melanogaster (taxid:7227)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 102/253 (40%), Positives = 163/253 (64%)

Query:   251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSA 310
             D++LY LL ++++  + +IR AYRKKAL+CHPDKNPD+ KA+E FH LSKA+E+L D+SA
Sbjct:     8 DVNLYDLLGISLESDQNEIRKAYRKKALECHPDKNPDNPKAVERFHELSKALEILTDESA 67

Query:   311 RAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKG--YK-VNKSEEEIL 367
             RAAYD V++ K+  ++R+ +LD  R+K K +LE RE+ A ++  K   Y  V KS+EE+L
Sbjct:    68 RAAYDKVLKAKKAAELRSRQLDGKRQKLKLELEERERAALHKLAKSQPYSTVAKSDEEVL 127

Query:   368 QQEIDRLRKEGSIRLQEEIKLMTEEL--NAAKE--LSELNAKLNPENYRLRIRWKSSSTD 423
              ++I+RLR+EGS  L+EE + M E+   N A++  L +   + +   +R++++WK+    
Sbjct:   128 HEQIERLRREGSRLLEEEQRAMQEQFRRNHAEQQKLQQQPVQFDSAQHRIKMKWKAEPGQ 187

Query:   424 TDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLN 483
                YT++ L K   KYG +  LV++ K+RG A++E    ++      YE G P  PL   
Sbjct:   188 D--YTQQELLKYLKKYGDVVALVVNSKRRGRAMVELATREACDMVLAYEKGDPAKPLHFE 245

Query:   484 YLNPDVEREESRK 496
             ++ P    +++ K
Sbjct:   246 WVTPPAADKQTTK 258

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

UNIPROTKB|E2RGH7 DNAJC17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 101/248 (40%), Positives = 160/248 (64%)

Query:   244 SIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIE 303
             ++  ++  +DLY LL +    ++++++ AYR+KAL CHPDKNPD+ +A E FH LS+A+E
Sbjct:     2 AVAKELLQMDLYALLGIEEKAADKEVKKAYRQKALSCHPDKNPDNPRAAELFHQLSQALE 61

Query:   304 VLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSE 363
             VL D +ARAAYD V + K++   R  KLD  RKK K DLE RE++A+       + ++S 
Sbjct:    62 VLTDTAARAAYDKVRKAKKQAAERTQKLDERRKKVKLDLEARERQAQAHGSDDEEESRST 121

Query:   364 EEILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKELSELNAKL-NPENY---RLRIRWKS 419
                L+QEI+RLR+EGS +L+E+ +L+ E++   +E   L  K  NPE+    +L+++WK 
Sbjct:   122 RT-LEQEIERLREEGSRQLEEQQRLIQEQIRQERE-QRLRGKAENPEDRGTPKLKLKWKC 179

Query:   420 SSTDTDV--YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPN 477
                D     Y+R+ L ++F KYG++  LV+S KK G+A++EF    +A  A   E+GL +
Sbjct:   180 KKEDESKGGYSRDVLLQLFQKYGEVLNLVLSSKKAGTAVVEFATIKAAELAVQNEVGLVD 239

Query:   478 CPLTLNYL 485
              PL +++L
Sbjct:   240 NPLKISWL 247

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q2KI83 DNAJC17 "DnaJ homolog subfamily C member 17" [Bos taurus (taxid:9913)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 100/247 (40%), Positives = 158/247 (63%)

Query:   244 SIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIE 303
             ++  ++  +DLY LL +     +++++ AYR+KAL CHPDKNPD+ +A E FH LS+A+E
Sbjct:     2 AVTKELLQMDLYALLGIEEKAEDKEVKKAYRQKALSCHPDKNPDNPRAAELFHQLSQALE 61

Query:   304 VLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSE 363
             VL D +ARAAYD V + K++   R  KLD  RKK K DLE RE++A+    +  + + S 
Sbjct:    62 VLTDAAARAAYDKVRKAKKQAAERTQKLDERRKKVKLDLEARERQAQALGSEEEEESGSA 121

Query:   364 EEILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKELSELNAKLNPENY---RLRIRWKSS 420
                L+QEI+RLR+EGS +L+E+ +L+ E++   +E        NPEN    +L+++WKS 
Sbjct:   122 RT-LEQEIERLREEGSRQLEEQQRLIREQIRQEQEQRLTGMAKNPENKETPKLKLKWKSK 180

Query:   421 --STDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNC 478
               +     Y+R+ L ++F KYG++  LV+S KK G+A++EF    +A  A   E+GL + 
Sbjct:   181 KEAESQGGYSRDVLLQLFQKYGEVLNLVLSSKKAGTAVVEFATVKAAELAVQNEVGLVDN 240

Query:   479 PLTLNYL 485
             PL +++L
Sbjct:   241 PLKISWL 247

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-040426-894 dnajc17 "DnaJ (Hsp40) homolog, subfamily C, member 17" [Danio rerio (taxid:7955)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 102/246 (41%), Positives = 152/246 (61%)

Query:   248 DIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLD 307
             ++ ++DLY LL +    +E+ I+ AYR++AL CHPDKNPD+ KA E FH LS+A+EVL D
Sbjct:     6 ELLEMDLYALLGVESTSTEKQIKKAYRQRALSCHPDKNPDNPKAAELFHQLSQALEVLTD 65

Query:   308 KSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEIL 367
              +A+AAYD V   K++ + RN KLD  RKK K DLE RE+ AEN + +  K+ ++    L
Sbjct:    66 AAAKAAYDKVRAAKKQAEERNRKLDDKRKKIKLDLEARERRAENVKAEEVKITRT----L 121

Query:   368 QQEIDRLRKEGSIRLQEEIKLMTEELNAAKEL------SELNAKLNPENYRLRIRWKSSS 421
             ++EI RLR+EGS  LQE+ +L+ E++   ++       S +    N    +L+++WK   
Sbjct:   122 EEEIARLREEGSRELQEQQRLIREQIERERDAHTNTDSSAVQQGSNNVTPKLKLKWKCKK 181

Query:   422 TDTDV--YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCP 479
              D     Y+ E L  +F KYG +  ++IS KK+GSA++EF  A +A  A   E GL   P
Sbjct:   182 EDESNAGYSHECLQNLFQKYGDVLNILISSKKKGSAVVEFASAKAAELACKNESGLTGNP 241

Query:   480 LTLNYL 485
             L + +L
Sbjct:   242 LKIMWL 247

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1SST1 DNAJC17 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 101/263 (38%), Positives = 165/263 (62%)

Query:   244 SIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIE 303
             ++  ++  +DLY LL +    ++++++ AYR+KAL CHPDKNPD+ +A E FH LS+A+E
Sbjct:     2 AVTKELLQMDLYALLGIGEKAADKEVKKAYRQKALSCHPDKNPDNPRAAELFHQLSQALE 61

Query:   304 VLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSE 363
             VL D +ARAAYD V + K++   R  KLD  RKK K DLE RE +A+    +  + ++S 
Sbjct:    62 VLTDAAARAAYDKVRKAKKQAAERTQKLDERRKKVKLDLEARELQAQTHGSEEEEESRSA 121

Query:   364 EEILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKE--LSELNAKLNPENY-RLRIRWKSS 420
                L+QEI+RLR+EGS +L+E+ +L+ E++   +E  L  +   L  +   +L+++WKS+
Sbjct:   122 RT-LEQEIERLREEGSRQLEEQQRLIQEQIRQEREQRLRGMTENLESKGTPKLKLKWKST 180

Query:   421 --STDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNC 478
               S     Y+++ L ++  KYG++  LV+S KK G+A++EF    +A  A   E+GL + 
Sbjct:   181 KESESQGGYSKDVLLRLLQKYGEVLNLVLSSKKAGTAVVEFATVRAAELAVQNEVGLVDN 240

Query:   479 PLTLNYLNPDVEREESRKQPKNP 501
             PL +++L     R +S   P +P
Sbjct:   241 PLKISWLEG---RPQSSMGPSHP 260

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q9NVM6 DNAJC17 "DnaJ homolog subfamily C member 17" [Homo sapiens (taxid:9606)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 102/274 (37%), Positives = 166/274 (60%)

Query:   244 SIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIE 303
             ++  ++  +DLY LL +    ++++++ AYR+KAL CHPDKNPD+ +A E FH LS+A+E
Sbjct:     2 AVTKELLQMDLYALLGIEEKAADKEVKKAYRQKALSCHPDKNPDNPRAAELFHQLSQALE 61

Query:   304 VLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSE 363
             VL D +ARAAYD V + K++   R  KLD  RKK K DLE RE++A+ +  +  + ++S 
Sbjct:    62 VLTDAAARAAYDKVRKAKKQAAERTQKLDEKRKKVKLDLEARERQAQAQESEEEEESRST 121

Query:   364 EEILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKELSELNAKL-NPENY---RLRIRWKS 419
                L+QEI+RLR+EGS +L+E+ +L+ E++   ++   L  K  N E     +L+++WK 
Sbjct:   122 RT-LEQEIERLREEGSRQLEEQQRLIREQIRQERD-QRLRGKAENTEGQGTPKLKLKWKC 179

Query:   420 SSTDTDV--YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPN 477
                D     Y+++ L ++  KYG++  LV+S KK G+A++EF    +A  A   E+GL +
Sbjct:   180 KKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVD 239

Query:   478 CPLTLNYLNPDVEREESRKQP---KNPVFSNIDF 508
              PL +++L    +    R      K  V S  D+
Sbjct:   240 NPLKISWLEGQPQDAVGRSHSGLSKGSVLSERDY 273

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E1C0R0 DNAJC17 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 103/258 (39%), Positives = 156/258 (60%)

Query:   248 DIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLD 307
             D+  LDLYGLL +    SE++++ AYR+KAL CHPDKNPD+ +A E FH LS+A+ VL D
Sbjct:     6 DLLQLDLYGLLGVGEKASEKEVKKAYRQKALTCHPDKNPDNPQAAEVFHQLSQALAVLTD 65

Query:   308 KSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEIL 367
              +ARAAYD V + K++   R  KLD  RKK K DLE RE+EA+    +  ++  +    L
Sbjct:    66 AAARAAYDKVRKAKKQAAERTQKLDEKRKKVKLDLEAREREAQARDNEEEEIRITRT--L 123

Query:   368 QQEIDRLRKEGSIRLQEEIKLMTEELNAAKEL---SELNAKLNPE-NYRLRIRWKSSSTD 423
             +QEI RLR+EGS +L+E+ +L+ E++   ++     E+ +        +L+++WK    D
Sbjct:   124 EQEIIRLREEGSRQLEEQQRLIREQIQLERQQRIQGEIGSGAEGRVTPKLKLKWKCRKED 183

Query:   424 TDV--YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLT 481
                  Y++E L +I  KYG +  L+IS +K GSA++EF    +A  A   E+GL + PL 
Sbjct:   184 ETGGGYSKEVLLRILQKYGDVLNLLISSRKAGSAVVEFATVKAAEMAVKNEVGLTDNPLK 243

Query:   482 LNYLNPDVEREESRKQPK 499
             +++L        S  QP+
Sbjct:   244 ISWLEGQPRNNPSSGQPR 261

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1916658 Dnajc17 "DnaJ (Hsp40) homolog, subfamily C, member 17" [Mus musculus (taxid:10090)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 102/273 (37%), Positives = 162/273 (59%)

Query:   244 SIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIE 303
             ++  ++  +DLY LL +    ++++++ AYR+KAL CHPDKNPD+ +A E FH LS+A+E
Sbjct:     2 AVTKELLQMDLYALLGIEEKAADKEVKKAYRQKALSCHPDKNPDNPRAAELFHQLSQALE 61

Query:   304 VLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSE 363
             VL D +ARAAYD V + K++   R  +LD  RKK K DLE RE++A+    +  + ++S 
Sbjct:    62 VLTDAAARAAYDKVRKAKKQAAERTQRLDENRKKVKLDLEARERQAQAHGSEEEEESRSA 121

Query:   364 EEILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKELSELNAKLNPENY---RLRIRWKSS 420
                L+QEI RLR+EGS +L+E+ +L+ E++   +E        N E     +L+++WK  
Sbjct:   122 TT-LEQEIARLREEGSRQLEEQQRLIQEQIRQDREQRLRGRTENTEGKGTPKLKLKWKCK 180

Query:   421 STDTDV--YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNC 478
               D     Y+R+ L ++  KYG++  LV+S KK G+A++EF    +A  A   E+GL + 
Sbjct:   181 KEDESQGGYSRDVLLRLLQKYGEVLNLVLSRKKAGNAIVEFATVRAAELAVRNEVGLADN 240

Query:   479 PLTLNYLNPDVEREESRKQP---KNPVFSNIDF 508
             PL +++L    +       P   K  V S  DF
Sbjct:   241 PLKVSWLEGQPQSTVDPGPPGLSKGSVLSERDF 273

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1308015 Dnajc17 "DnaJ (Hsp40) homolog, subfamily C, member 17" [Rattus norvegicus (taxid:10116)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 100/273 (36%), Positives = 163/273 (59%)

Query:   244 SIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIE 303
             ++  ++  +DLY LL +    ++++++ AYR+KAL CHPDKNPD+ +A E FH LS+A+E
Sbjct:     2 AVTKELLQMDLYALLGIEEKAADKEVKKAYRQKALSCHPDKNPDNPRAAELFHQLSQALE 61

Query:   304 VLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSE 363
             VL D +ARAAYD V + +++   R  +LD  RKK K DLE RE++A+ +  +  + ++S 
Sbjct:    62 VLTDAAARAAYDKVRKARKQAAERTQRLDEKRKKVKLDLEARERQAQAQGTEEEEESRST 121

Query:   364 EEILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKELSELNAKLNPENY---RLRIRWKSS 420
                L+QEI RLR+EGS +L+E+ +L+ E++   +E        N E     +L+++WK  
Sbjct:   122 TT-LEQEIARLREEGSRQLEEQQRLIQEQIRQDREQRLRGRTENTEGKGTPKLKLKWKCK 180

Query:   421 STDTDV--YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNC 478
               D     Y+R+ L ++  KYG++  LV+S KK G+A++EF    +A  A   E+GL + 
Sbjct:   181 KEDESQGGYSRDILLRLLQKYGEVLNLVLSKKKAGNAIVEFATVRAAELAVRNEVGLADN 240

Query:   479 PLTLNYLNPDVEREESRKQP---KNPVFSNIDF 508
             PL +++L    +       P   K  V S  D+
Sbjct:   241 PLKVSWLEGQPQGTVDPSPPGLSKGSVLSERDY 273

GO:0000166 "nucleotide binding" evidence=IEA

RGD|1565752 RGD1565752 "similar to RIKEN cDNA 1700025B16" [Rattus norvegicus (taxid:10116)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 96/275 (34%), Positives = 158/275 (57%)

Query:   244 SIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIE 303
             ++  +   +DLY LL +    ++++++ AYR+KAL CHPDKNPD+ +A E FH LS+A+E
Sbjct:     2 ALTKEFLQMDLYTLLGIEEKATDKEVKKAYRQKALSCHPDKNPDNLRAAELFHQLSQALE 61

Query:   304 VLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSE 363
             VL D +AR AYD   + ++    R  +LD  RKK K DLE RE++A+ +  +  + ++S 
Sbjct:    62 VLTDAAARTAYDKERKARKRAAERTQRLDENRKKLKLDLEARERQAQAQGTEEEEESRST 121

Query:   364 EEILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKELSELNAKLNPENYR---LRIRWKSS 420
                L+Q+I RL++EGS +L+E+ +L+ E+    ++        N E  R   L+++W   
Sbjct:   122 TT-LEQKIARLQEEGSRQLEEQQRLIQEQTRQDRKQRLRGRAENREGKRTPKLKLKWTCK 180

Query:   421 STDTDV--YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNC 478
               D     Y+R+ L K+  KYG++  LV+S +K G+A++EF    +A  A   E+GL + 
Sbjct:   181 KEDKSQGGYSRDVLLKLLHKYGEVLNLVVSGRKPGNAIVEFATVRAAELAVRNEVGLTDN 240

Query:   479 PLTLNYLNPDVEREESRKQP---KNPVFSNIDFSG 510
             PL +++L    +       P   K  V S  D+ G
Sbjct:   241 PLKVSWLEGQPQGTVDPSPPGLTKGSVSSERDYEG 275

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	512
pfam00226	63	pfam00226, DnaJ, DnaJ domain	5e-20
cd12429	74	cd12429, RRM_DNAJC17, RNA recognition motif in the	9e-20
cd12429	74	cd12429, RRM_DNAJC17, RNA recognition motif in the	9e-20
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	2e-18
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	7e-17
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	2e-15
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	4e-14
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	2e-13
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	4e-13
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	1e-12
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	5e-12
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	8e-12
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	2e-11
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	2e-11
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	3e-11
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	5e-11
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	1e-10
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	2e-10
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	6e-10
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	1e-09
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	2e-09
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	3e-09
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	3e-09
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	5e-09
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	5e-09
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	6e-09
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	2e-08
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	5e-08
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	8e-08
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	1e-07
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	4e-07
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	4e-07
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	2e-06
pfam13893	56	pfam13893, RRM_5, RNA recognition motif	3e-05
pfam13893	56	pfam13893, RRM_5, RNA recognition motif	3e-05
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	6e-05
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	8e-05
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	8e-05
cd12317	72	cd12317, RRM4_RBM19_RRM3_MRD1, RNA recognition mot	2e-04
cd12317	72	cd12317, RRM4_RBM19_RRM3_MRD1, RNA recognition mot	2e-04
cd12341	68	cd12341, RRM_hnRNPC_like, RNA recognition motif in	2e-04
cd12341	68	cd12341, RRM_hnRNPC_like, RNA recognition motif in	2e-04
cd00590	72	cd00590, RRM_SF, RNA recognition motif (RRM) super	2e-04
cd00590	72	cd00590, RRM_SF, RNA recognition motif (RRM) super	2e-04
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	3e-04
smart00360	73	smart00360, RRM, RNA recognition motif	3e-04
smart00360	73	smart00360, RRM, RNA recognition motif	3e-04
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	3e-04
PHA03102	153	PHA03102, PHA03102, Small T antigen; Reviewed	3e-04
pfam14259	69	pfam14259, RRM_6, RNA recognition motif (a	4e-04
pfam14259	69	pfam14259, RRM_6, RNA recognition motif (a	4e-04
pfam00076	70	pfam00076, RRM_1, RNA recognition motif	5e-04
pfam00076	70	pfam00076, RRM_1, RNA recognition motif	5e-04
cd12310	72	cd12310, RRM3_Spen, RNA recognition motif 3 in the	0.001
cd12310	72	cd12310, RRM3_Spen, RNA recognition motif 3 in the	0.001
cd12422	85	cd12422, RRM2_PTBP1_hnRNPL_like, RNA recognition m	0.003
cd12422	85	cd12422, RRM2_PTBP1_hnRNPL_like, RNA recognition m	0.003

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 83.3 bits (207), Expect = 5e-20
 Identities = 32/63 (50%), Positives = 41/63 (65%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L +  D S+++I+ AYRK ALK HPDKNP D  A E F  +++A EVL D   RA
Sbjct: 1   DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60

Query: 313 AYD 315
            YD
Sbjct: 61  IYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|240875 cd12429, RRM_DNAJC17, RNA recognition motif in the DnaJ homolog subfamily C member 17

 Score = 83.1 bits (206), Expect = 9e-20
 Identities = 32/74 (43%), Positives = 50/74 (67%), Gaps = 1/74 (1%)

Query: 24 RLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY 83
          RL+++WK    + D Y+ + L KIFSKYG ++ +V+S KK+GSA++EF    +A  A   
Sbjct: 2  RLKVKWKRKKGNGD-YSEDELRKIFSKYGDVSDVVVSSKKKGSAIVEFASKKAAEAAVEN 60

Query: 84 ELGLPNCPLTLNYL 97
          E GLP+ PL +++L
Sbjct: 61 ECGLPSNPLLVSWL 74

The CD corresponds to the RRM of some eukaryotic DnaJ homolog subfamily C member 17 and similar proteins. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Members in this family contains an N-terminal DnaJ domain or J-domain, which mediates the interaction with Hsp70. They also contains a RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), at the C-terminus, which may play an essential role in RNA binding. . Length = 74

>gnl|CDD|240875 cd12429, RRM_DNAJC17, RNA recognition motif in the DnaJ homolog subfamily C member 17

 Score = 83.1 bits (206), Expect = 9e-20
 Identities = 32/74 (43%), Positives = 50/74 (67%), Gaps = 1/74 (1%)

Query: 412 RLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY 471
           RL+++WK    + D Y+ + L KIFSKYG ++ +V+S KK+GSA++EF    +A  A   
Sbjct: 2   RLKVKWKRKKGNGD-YSEDELRKIFSKYGDVSDVVVSSKKKGSAIVEFASKKAAEAAVEN 60

Query: 472 ELGLPNCPLTLNYL 485
           E GLP+ PL +++L
Sbjct: 61  ECGLPSNPLLVSWL 74

The CD corresponds to the RRM of some eukaryotic DnaJ homolog subfamily C member 17 and similar proteins. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Members in this family contains an N-terminal DnaJ domain or J-domain, which mediates the interaction with Hsp70. They also contains a RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), at the C-terminus, which may play an essential role in RNA binding. . Length = 74

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 86.4 bits (215), Expect = 2e-18
 Identities = 32/63 (50%), Positives = 43/63 (68%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L ++ + SE +I+ AYRK A+K HPD+NP DK+A E F  + +A EVL D   RA
Sbjct: 5   DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRA 64

Query: 313 AYD 315
           AYD
Sbjct: 65  AYD 67

Length = 371

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 74.1 bits (183), Expect = 7e-17
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLD 307
           D Y +L +  D S+++I+ AYRK ALK HPDKNPDD +A E F  +++A EVL D
Sbjct: 1   DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 77.7 bits (192), Expect = 2e-15
 Identities = 33/63 (52%), Positives = 44/63 (69%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L ++ D SE++I+ AYRK A K HPD+NP DK+A E F  +++A EVL D   RA
Sbjct: 5   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRA 64

Query: 313 AYD 315
           AYD
Sbjct: 65  AYD 67

Length = 371

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 66.5 bits (163), Expect = 4e-14
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKK-AIETFHLLSKAIEVLLDK 308
           D Y +L +  D S  +I+ AYRK ALK HPDKNP DK+ A E F  +++A EVL D 
Sbjct: 2   DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDP 58

Length = 60

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 71.1 bits (175), Expect = 2e-13
 Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L ++ D SE++I+ AYRK A K HPD+N  DK+A E F  +++A EVL D   RA
Sbjct: 1   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRA 59

Query: 313 AYD 315
            YD
Sbjct: 60  QYD 62

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 70.6 bits (173), Expect = 4e-13
 Identities = 31/63 (49%), Positives = 42/63 (66%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L +T D SE++I+ +YRK A+K HPD+NP DK+A E F   ++A EVL D   R 
Sbjct: 5   DYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRG 64

Query: 313 AYD 315
            YD
Sbjct: 65  IYD 67

Length = 366

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 30/63 (47%), Positives = 42/63 (66%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L ++ D SE +I+ AYRK AL+ HPD+NPD+ +A + F   ++A EVL D   RA
Sbjct: 5   DYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRA 64

Query: 313 AYD 315
            YD
Sbjct: 65  RYD 67

Length = 373

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 67.1 bits (164), Expect = 5e-12
 Identities = 27/63 (42%), Positives = 40/63 (63%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L L    S+ +I+ A+RK A+K HPDKN  +K+A E F  +++A +VL D   +A
Sbjct: 5   DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKA 64

Query: 313 AYD 315
            YD
Sbjct: 65  QYD 67

Length = 380

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 66.4 bits (162), Expect = 8e-12
 Identities = 28/63 (44%), Positives = 41/63 (65%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L ++   +  +I+ AYRKKA++ HPDKNP DK+A E F   ++A +VL D   R+
Sbjct: 6   DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRS 65

Query: 313 AYD 315
            YD
Sbjct: 66  RYD 68

Length = 386

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 28/63 (44%), Positives = 38/63 (60%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y  L ++ D S ++I+ AYRK A + HPD NP D  A E F  +S+A +VL D + R 
Sbjct: 10  DFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRK 69

Query: 313 AYD 315
            YD
Sbjct: 70  EYD 72

Length = 392

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 29/64 (45%), Positives = 42/64 (65%)

Query: 252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSAR 311
           +D Y +L ++   S ++I+ AYRK A+K HPDKNP D +A + F  +S+A EVL D   R
Sbjct: 1   MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKR 60

Query: 312 AAYD 315
            +YD
Sbjct: 61  ESYD 64

Length = 391

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D YGLL ++ + S+ +I+ AYRK A + HPD NPD+ +A E F  +S A EVL D   R 
Sbjct: 4   DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDE-EAQEKFKEISVAYEVLSDPEKRR 62

Query: 313 AYD 315
             D
Sbjct: 63  IVD 65

Length = 378

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 64.1 bits (156), Expect = 5e-11
 Identities = 29/63 (46%), Positives = 41/63 (65%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L ++    + +I+ AYRK ALK HPDKNPD+K+A E F  +++A EVL +   R 
Sbjct: 4   DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRR 63

Query: 313 AYD 315
            YD
Sbjct: 64  RYD 66

Length = 397

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSAR 311
           +D Y LL ++   S  +I+SAYRK ALK HPD+N  +K A E F  +++A  VL D   R
Sbjct: 2   MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKR 60

Query: 312 AAYD 315
           A YD
Sbjct: 61  AHYD 64

Length = 371

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 2/70 (2%)

Query: 246 MADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVL 305
           MA  KD   Y +L +  + +E++I+ AYR+ A K HPD NP DK+A + F  +++A E+L
Sbjct: 1   MAAKKDY--YEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEIL 58

Query: 306 LDKSARAAYD 315
            D   RA YD
Sbjct: 59  SDPQKRAQYD 68

Length = 386

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 60.6 bits (147), Expect = 6e-10
 Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L L+ D S +DI+ AYRK A+K HPDKN  +  A E F  +S+A  VL D   RA
Sbjct: 6   DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKN-KEPDAEEKFKEISEAYAVLSDAEKRA 64

Query: 313 AYD 315
            YD
Sbjct: 65  QYD 67

Length = 377

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 254 LYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAA 313
           LY +L L+ DC+  +I+ AYRK A+K HPDK  D +K    F  +S+A EVL D   R  
Sbjct: 30  LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEK----FKEISRAYEVLSDPEKRKI 85

Query: 314 YD 315
           YD
Sbjct: 86  YD 87

Length = 421

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 59.2 bits (143), Expect = 2e-09
 Identities = 26/67 (38%), Positives = 43/67 (64%)

Query: 249 IKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDK 308
           + +   Y +L ++   ++++I+SAYRK A+K HPDKN  +K++ E F   ++A E+L D 
Sbjct: 1   MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDP 60

Query: 309 SARAAYD 315
             R AYD
Sbjct: 61  KKRQAYD 67

Length = 372

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 28/63 (44%), Positives = 38/63 (60%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L +  D +E +I+ AYRK A + HPD N  D KA E F  +S+A +VL D+  R 
Sbjct: 10  DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRK 69

Query: 313 AYD 315
            YD
Sbjct: 70  EYD 72

Length = 389

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 57.1 bits (137), Expect = 3e-09
 Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKK-AIETFHLLSKAIEVLLDK 308
             LD Y +L +  + S ++I+ AYRK ALK HPD+NP D K A E F  +++A E+L D 
Sbjct: 4   DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDP 63

Query: 309 SARAAYD 315
             RA YD
Sbjct: 64  ERRAEYD 70

Length = 237

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           + Y  L ++ D S+ +I+ AYRK + K HPD N  +  A E +  + +A E L D   RA
Sbjct: 5   EYYDRLGVSKDASQDEIKKAYRKLSKKYHPDIN-KEPGAEEKYKEVQEAYETLSDPQKRA 63

Query: 313 AYD 315
           AYD
Sbjct: 64  AYD 66

Length = 380

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 57.7 bits (139), Expect = 5e-09
 Identities = 29/63 (46%), Positives = 41/63 (65%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L L+   S+ +I+ AYRK A+K HPDKN  +K+A   F   ++A EVL+D + RA
Sbjct: 4   DYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRA 63

Query: 313 AYD 315
            YD
Sbjct: 64  QYD 66

Length = 365

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 57.4 bits (138), Expect = 6e-09
 Identities = 29/65 (44%), Positives = 43/65 (66%)

Query: 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSA 310
           +L  Y +LE+    +++ I+ +YRK ALK HPD+N  DK+A E F L+++A  VL D+  
Sbjct: 2   ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKK 61

Query: 311 RAAYD 315
           RA YD
Sbjct: 62  RALYD 66

Length = 369

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L ++ D  + +++ AYR+ A K HPD N  +  A + F  +++A EVL D   RA
Sbjct: 4   DYYEILGVSRDADKDELKRAYRRLARKYHPDVN-KEPGAEDRFKEINRAYEVLSDPETRA 62

Query: 313 AYD 315
            YD
Sbjct: 63  RYD 65

Length = 374

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 22/64 (34%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKK-AIETFHLLSKAIEVLLDKSAR 311
           D Y +L ++ + ++++I+ AY++   + HPD++P+++K A + F  + +A EVL D   R
Sbjct: 5   DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKR 64

Query: 312 AAYD 315
           A YD
Sbjct: 65  AMYD 68

Length = 369

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 53.8 bits (129), Expect = 8e-08
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDK-KAIETFHLLSKAIEVLLDKSAR 311
           D Y +L +  + S++DI+ A+R+ A K HPD +P +K +A E F  +S+A EVL D   R
Sbjct: 4   DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKR 63

Query: 312 AAYD 315
             YD
Sbjct: 64  RQYD 67

Length = 365

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L ++   S+ +I+ AYRK + K HPD N  ++ A E F  +S+A EVL D   RA
Sbjct: 5   DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDIN-KEEGADEKFKEISEAYEVLSDDQKRA 63

Query: 313 AYD 315
            YD
Sbjct: 64  QYD 66

Length = 376

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 51.9 bits (124), Expect = 4e-07
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 249 IKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDK 308
           +K  D Y +L ++   SEQ+IR AYRK A + HPD N     A +    +++A +VLLDK
Sbjct: 1   MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLN-KSPDAHDKMVEINEAADVLLDK 59

Query: 309 SARAAYD 315
             R  YD
Sbjct: 60  DKRKQYD 66

Length = 372

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L +  +  +++I+ AYRK A K HPD + +++ A E F  +S+A  VL D   R 
Sbjct: 6   DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVS-EEEGAEEKFKEISEAYAVLSDDEKRQ 64

Query: 313 AYD 315
            YD
Sbjct: 65  RYD 67

Length = 378

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L ++ + ++++I+ AYR+ A K HPD N  + +A E F  +++A +VL D   R 
Sbjct: 4   DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNK-NPEAEEKFKEINEAYQVLSDPEKRK 62

Query: 313 AYD 315
            YD
Sbjct: 63  LYD 65

Length = 382

>gnl|CDD|206064 pfam13893, RRM_5, RNA recognition motif

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 44 LTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPL 92
          L K+FS +G +  + +  KK G A +EF   ++A +A  Y   L     
Sbjct: 1  LYKLFSPFGNVEKIKLLKKKPGFAFVEFSTEEAAEKAVQY---LNGVLF 46

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. Length = 56

>gnl|CDD|206064 pfam13893, RRM_5, RNA recognition motif

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 432 LTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPL 480
           L K+FS +G +  + +  KK G A +EF   ++A +A  Y   L     
Sbjct: 1   LYKLFSPFGNVEKIKLLKKKPGFAFVEFSTEEAAEKAVQY---LNGVLF 46

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. Length = 56

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 45.0 bits (106), Expect = 6e-05
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L ++   S+ D++ AY K A + HPD   D K A + F  ++ A +VL D+  RA
Sbjct: 4   DYYQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDAEKKFKEINAAYDVLKDEQKRA 62

Query: 313 AYD 315
           AYD
Sbjct: 63  AYD 65

Length = 372

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 45.2 bits (106), Expect = 8e-05
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L +  D  EQ+I+ A+RK A K HPD+N     A   F  +++A +VL +   RA
Sbjct: 3   DYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRN-KAPDAASIFAEINEANDVLSNPKKRA 61

Query: 313 AYD 315
            YD
Sbjct: 62  NYD 64

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 44.4 bits (105), Expect = 8e-05
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPD--KNPDDKKAIETFHLLSKAIEVLLDKSA 310
           D Y ++ +      + I++AYR+ A K HPD  K PD   A   F  +++A EVL D+  
Sbjct: 5   DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPD---AEARFKEVAEAWEVLSDEQR 61

Query: 311 RAAYD 315
           RA YD
Sbjct: 62  RAEYD 66

Length = 306

>gnl|CDD|240763 cd12317, RRM4_RBM19_RRM3_MRD1, RNA recognition motif 4 in RNA-binding protein 19 (RBM19) and RNA recognition motif 3 in multiple RNA-binding domain-containing protein 1 (MRD1)

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 11/61 (18%)

Query: 40 TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRA------KLYELGLPNCPLT 93
          T E L ++F K+G +  L++ P  R  AL+EF     AR+A      K ++    + PL 
Sbjct: 13 TEEELRELFEKFGSLGRLLLPPS-RTIALVEFLEPSDARKAFKSLAYKRFK----HVPLY 67

Query: 94 L 94
          L
Sbjct: 68 L 68

This subfamily corresponds to the RRM4 of RBM19 and the RRM3 of MRD1. RBM19, also termed RNA-binding domain-1 (RBD-1), is a nucleolar protein conserved in eukaryotes involved in ribosome biogenesis by processing rRNA and is essential for preimplantation development. It has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). MRD1 is encoded by a novel yeast gene MRD1 (multiple RNA-binding domain). It is well conserved in yeast and its homologues exist in all eukaryotes. MRD1 is present in the nucleolus and the nucleoplasm. It interacts with the 35 S precursor rRNA (pre-rRNA) and U3 small nucleolar RNAs (snoRNAs). MRD1 is essential for the initial processing at the A0-A2 cleavage sites in the 35 S pre-rRNA. MRD1 contains 5 conserved RRMs, which may play an important structural role in organizing specific rRNA processing events. . Length = 72

>gnl|CDD|240763 cd12317, RRM4_RBM19_RRM3_MRD1, RNA recognition motif 4 in RNA-binding protein 19 (RBM19) and RNA recognition motif 3 in multiple RNA-binding domain-containing protein 1 (MRD1)

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 11/61 (18%)

Query: 428 TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRA------KLYELGLPNCPLT 481
           T E L ++F K+G +  L++ P  R  AL+EF     AR+A      K ++    + PL 
Sbjct: 13  TEEELRELFEKFGSLGRLLLPPS-RTIALVEFLEPSDARKAFKSLAYKRFK----HVPLY 67

Query: 482 L 482
           L
Sbjct: 68  L 68

This subfamily corresponds to the RRM4 of RBM19 and the RRM3 of MRD1. RBM19, also termed RNA-binding domain-1 (RBD-1), is a nucleolar protein conserved in eukaryotes involved in ribosome biogenesis by processing rRNA and is essential for preimplantation development. It has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). MRD1 is encoded by a novel yeast gene MRD1 (multiple RNA-binding domain). It is well conserved in yeast and its homologues exist in all eukaryotes. MRD1 is present in the nucleolus and the nucleoplasm. It interacts with the 35 S precursor rRNA (pre-rRNA) and U3 small nucleolar RNAs (snoRNAs). MRD1 is essential for the initial processing at the A0-A2 cleavage sites in the 35 S pre-rRNA. MRD1 contains 5 conserved RRMs, which may play an important structural role in organizing specific rRNA processing events. . Length = 72

>gnl|CDD|240787 cd12341, RRM_hnRNPC_like, RNA recognition motif in heterogeneous nuclear ribonucleoprotein C (hnRNP C)-related proteins

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 36 TDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG 86
          TD  ++E L +IFSKYGK  IL IS  K G   ++F++ + AR A   E G
Sbjct: 10 TDKVSKEDLEEIFSKYGK--ILGISLHK-GYGFVQFDNEEDARAAVAGENG 57

This subfamily corresponds to the RRM in the hnRNP C-related protein family, including hnRNP C proteins, Raly, and Raly-like protein (RALYL). hnRNP C proteins, C1 and C2, are produced by a single coding sequence. They are the major constituents of the heterogeneous nuclear RNA (hnRNA) ribonucleoprotein (hnRNP) complex in vertebrates. They bind hnRNA tightly, suggesting a central role in the formation of the ubiquitous hnRNP complex; they are involved in the packaging of the hnRNA in the nucleus and in processing of pre-mRNA such as splicing and 3'-end formation. Raly, also termed autoantigen p542, is an RNA-binding protein that may play a critical role in embryonic development. The biological role of RALYL remains unclear. It shows high sequence homology with hnRNP C proteins and Raly. Members of this family are characterized by an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal auxiliary domain. The Raly proteins contain a glycine/serine-rich stretch within the C-terminal regions, which is absent in the hnRNP C proteins. Thus, the Raly proteins represent a newly identified class of evolutionarily conserved autoepitopes. . Length = 68

>gnl|CDD|240787 cd12341, RRM_hnRNPC_like, RNA recognition motif in heterogeneous nuclear ribonucleoprotein C (hnRNP C)-related proteins

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 424 TDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG 474
           TD  ++E L +IFSKYGK  IL IS  K G   ++F++ + AR A   E G
Sbjct: 10  TDKVSKEDLEEIFSKYGK--ILGISLHK-GYGFVQFDNEEDARAAVAGENG 57

This subfamily corresponds to the RRM in the hnRNP C-related protein family, including hnRNP C proteins, Raly, and Raly-like protein (RALYL). hnRNP C proteins, C1 and C2, are produced by a single coding sequence. They are the major constituents of the heterogeneous nuclear RNA (hnRNA) ribonucleoprotein (hnRNP) complex in vertebrates. They bind hnRNA tightly, suggesting a central role in the formation of the ubiquitous hnRNP complex; they are involved in the packaging of the hnRNA in the nucleus and in processing of pre-mRNA such as splicing and 3'-end formation. Raly, also termed autoantigen p542, is an RNA-binding protein that may play a critical role in embryonic development. The biological role of RALYL remains unclear. It shows high sequence homology with hnRNP C proteins and Raly. Members of this family are characterized by an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal auxiliary domain. The Raly proteins contain a glycine/serine-rich stretch within the C-terminal regions, which is absent in the hnRNP C proteins. Thus, the Raly proteins represent a newly identified class of evolutionarily conserved autoepitopes. . Length = 68

>gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 4/45 (8%)

Query: 40 TRESLTKIFSKYGKI-NILVI---SPKKRGSALLEFEHADSARRA 80
          T E L ++FSK+G+I ++ ++     K +G A +EFE  + A +A
Sbjct: 11 TEEDLRELFSKFGEIESVRIVRDKDGKSKGFAFVEFESPEDAEKA 55

RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72

>gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 4/45 (8%)

Query: 428 TRESLTKIFSKYGKI-NILVI---SPKKRGSALLEFEHADSARRA 468
           T E L ++FSK+G+I ++ ++     K +G A +EFE  + A +A
Sbjct: 11  TEEDLRELFSKFGEIESVRIVRDKDGKSKGFAFVEFESPEDAEKA 55

RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 10/83 (12%)

Query: 242 LSSIMADIKDL-----DLYGLLELTIDCSEQDIRSAYRKKALKCHPDK----NPDDKKAI 292
           L S +  +K       D Y +L +  D SE+DI+  YR  ++K HPDK      + +   
Sbjct: 83  LISNIRTLKIEYRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEY 142

Query: 293 E-TFHLLSKAIEVLLDKSARAAY 314
           E  +  ++KA  +L DK  R  Y
Sbjct: 143 EEKYKTITKAYGLLTDKKRRENY 165

Length = 610

>gnl|CDD|214636 smart00360, RRM, RNA recognition motif

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 5/47 (10%)

Query: 40 TRESLTKIFSKYGKI-NILVISPKK----RGSALLEFEHADSARRAK 81
          T E L ++FSK+GK+ ++ ++  K+    +G A +EFE  + A +A 
Sbjct: 12 TEEELRELFSKFGKVESVRLVRDKETGKSKGFAFVEFESEEDAEKAL 58

Length = 73

>gnl|CDD|214636 smart00360, RRM, RNA recognition motif

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 5/47 (10%)

Query: 428 TRESLTKIFSKYGKI-NILVISPKK----RGSALLEFEHADSARRAK 469
           T E L ++FSK+GK+ ++ ++  K+    +G A +EFE  + A +A 
Sbjct: 12  TEEELRELFSKFGKVESVRLVRDKETGKSKGFAFVEFESEEDAEKAL 58

Length = 73

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L +  + S+ +I+ A++K A K HPD N     A E F  +++A  VL D   R 
Sbjct: 5   DYYAILGVPKNASQDEIKKAFKKLARKYHPDVN-KSPGAEEKFKEINEAYTVLSDPEKRR 63

Query: 313 AYDS 316
            YD+
Sbjct: 64  IYDT 67

Length = 291

>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 257 LLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKA 301
           LL L      +   +R AY +K L+ HPDK  D++K  E   L  K 
Sbjct: 10  LLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKF 56

Length = 153

>gnl|CDD|222631 pfam14259, RRM_6, RNA recognition motif (a

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 40 TRESLTKIFSKYGKINILVISPKK---RGSALLEFEHADSARRA 80
          T E L + FS YGK+  + +   K   RG A +EF   + A  A
Sbjct: 11 TEEDLREFFSPYGKVEGVRLVRNKDRPRGFAFVEFASPEDAEAA 54

k.a. RRM, RBD, or RNP domain). Length = 69

>gnl|CDD|222631 pfam14259, RRM_6, RNA recognition motif (a

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 428 TRESLTKIFSKYGKINILVISPKK---RGSALLEFEHADSARRA 468
           T E L + FS YGK+  + +   K   RG A +EF   + A  A
Sbjct: 11  TEEDLREFFSPYGKVEGVRLVRNKDRPRGFAFVEFASPEDAEAA 54

k.a. RRM, RBD, or RNP domain). Length = 69

>gnl|CDD|215696 pfam00076, RRM_1, RNA recognition motif

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 39 YTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAK--LYELGLPNCPL 92
           T E L  +FSK+G I  + I      + +G A +EFE  + A +A   L    L    L
Sbjct: 10 TTEEDLKDLFSKFGPIESIRIVRDETGRSKGFAFVEFEDEEDAEKALEALNGKELGGREL 69

Query: 93 T 93
           
Sbjct: 70 R 70

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. Length = 70

>gnl|CDD|215696 pfam00076, RRM_1, RNA recognition motif

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 427 YTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAK--LYELGLPNCPL 480
            T E L  +FSK+G I  + I      + +G A +EFE  + A +A   L    L    L
Sbjct: 10  TTEEDLKDLFSKFGPIESIRIVRDETGRSKGFAFVEFEDEEDAEKALEALNGKELGGREL 69

Query: 481 T 481
            
Sbjct: 70  R 70

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. Length = 70

>gnl|CDD|240756 cd12310, RRM3_Spen, RNA recognition motif 3 in the Spen (split end) protein family

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 40 TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAK 81
          +   L + F ++G I   +     R  A +E+E  ++A+ AK
Sbjct: 11 SLAELEREFDRFGAIR-RIDYDPGRNYAYIEYESIEAAQAAK 51

This subfamily corresponds to the RRM3 domain in the Spen (split end) protein family which includes RNA binding motif protein 15 (RBM15), putative RNA binding motif protein 15B (RBM15B) and similar proteins found in Metazoa. RBM15, also termed one-twenty two protein 1 (OTT1), conserved in eukaryotes, is a novel mRNA export factor and is a novel component of the NXF1 pathway. It binds to NXF1 and serves as receptor for the RNA export element RTE. It also possess mRNA export activity and can facilitate the access of DEAD-box protein DBP5 to mRNA at the nuclear pore complex (NPC). RNA-binding protein 15B (RBM15B), also termed one twenty-two 3 (OTT3), is a paralog of RBM15 and therefore has post-transcriptional regulatory activity. It is a nuclear protein sharing with RBM15 the association with the splicing factor compartment and the nuclear envelope as well as the binding to mRNA export factors NXF1 and Aly/REF. Members in this family belong to the Spen (split end) protein family, which shares a domain architecture comprising of three N-terminal RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. . Length = 72

>gnl|CDD|240756 cd12310, RRM3_Spen, RNA recognition motif 3 in the Spen (split end) protein family

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 428 TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAK 469
           +   L + F ++G I   +     R  A +E+E  ++A+ AK
Sbjct: 11  SLAELEREFDRFGAIR-RIDYDPGRNYAYIEYESIEAAQAAK 51

This subfamily corresponds to the RRM3 domain in the Spen (split end) protein family which includes RNA binding motif protein 15 (RBM15), putative RNA binding motif protein 15B (RBM15B) and similar proteins found in Metazoa. RBM15, also termed one-twenty two protein 1 (OTT1), conserved in eukaryotes, is a novel mRNA export factor and is a novel component of the NXF1 pathway. It binds to NXF1 and serves as receptor for the RNA export element RTE. It also possess mRNA export activity and can facilitate the access of DEAD-box protein DBP5 to mRNA at the nuclear pore complex (NPC). RNA-binding protein 15B (RBM15B), also termed one twenty-two 3 (OTT3), is a paralog of RBM15 and therefore has post-transcriptional regulatory activity. It is a nuclear protein sharing with RBM15 the association with the splicing factor compartment and the nuclear envelope as well as the binding to mRNA export factors NXF1 and Aly/REF. Members in this family belong to the Spen (split end) protein family, which shares a domain architecture comprising of three N-terminal RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. . Length = 72

>gnl|CDD|240868 cd12422, RRM2_PTBP1_hnRNPL_like, RNA recognition motif in polypyrimidine tract-binding protein 1 (PTB or hnRNP I), heterogeneous nuclear ribonucleoprotein L (hnRNP-L), and similar proteins

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 40 TRESLTKIFSKYGKINILVISPKKRG-SALLEFEHADSARRAK 81
          T + L ++FS YG +  ++I  K  G  AL++F+  +SA  AK
Sbjct: 14 TVDVLHQVFSPYGAVEKILIFEKNTGVQALVQFDSVESAENAK 56

This subfamily corresponds to the RRM2 of polypyrimidine tract-binding protein 1 (PTB or hnRNP I), polypyrimidine tract-binding protein 2 (PTBP2 or nPTB), regulator of differentiation 1 (Rod1), heterogeneous nuclear ribonucleoprotein L (hnRNP-L), heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL), polypyrimidine tract-binding protein homolog 3 (PTBPH3), polypyrimidine tract-binding protein homolog 1 and 2 (PTBPH1 and PTBPH2), and similar proteins, and RRM3 of PTBPH1 and PTBPH2. PTB is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTBP2 is highly homologous to PTB and is perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. Rod1 is a mammalian polypyrimidine tract binding protein (PTB) homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It might play a role controlling differentiation in mammals. hnRNP-L is a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both, nuclear and cytoplasmic, roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-LL protein plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. This family also includes polypyrimidine tract binding protein homolog 3 (PTBPH3) found in plant. Although its biological roles remain unclear, PTBPH3 shows significant sequence similarity to other family members, all of which contain four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). Although their biological roles remain unclear, both PTBPH1 and PTBPH2 show significant sequence similarity to PTB. However, in contrast to PTB, they have three RRMs. . Length = 85

>gnl|CDD|240868 cd12422, RRM2_PTBP1_hnRNPL_like, RNA recognition motif in polypyrimidine tract-binding protein 1 (PTB or hnRNP I), heterogeneous nuclear ribonucleoprotein L (hnRNP-L), and similar proteins

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 428 TRESLTKIFSKYGKINILVISPKKRG-SALLEFEHADSARRAK 469
           T + L ++FS YG +  ++I  K  G  AL++F+  +SA  AK
Sbjct: 14  TVDVLHQVFSPYGAVEKILIFEKNTGVQALVQFDSVESAENAK 56

This subfamily corresponds to the RRM2 of polypyrimidine tract-binding protein 1 (PTB or hnRNP I), polypyrimidine tract-binding protein 2 (PTBP2 or nPTB), regulator of differentiation 1 (Rod1), heterogeneous nuclear ribonucleoprotein L (hnRNP-L), heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL), polypyrimidine tract-binding protein homolog 3 (PTBPH3), polypyrimidine tract-binding protein homolog 1 and 2 (PTBPH1 and PTBPH2), and similar proteins, and RRM3 of PTBPH1 and PTBPH2. PTB is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTBP2 is highly homologous to PTB and is perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. Rod1 is a mammalian polypyrimidine tract binding protein (PTB) homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It might play a role controlling differentiation in mammals. hnRNP-L is a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both, nuclear and cytoplasmic, roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-LL protein plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. This family also includes polypyrimidine tract binding protein homolog 3 (PTBPH3) found in plant. Although its biological roles remain unclear, PTBPH3 shows significant sequence similarity to other family members, all of which contain four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). Although their biological roles remain unclear, both PTBPH1 and PTBPH2 show significant sequence similarity to PTB. However, in contrast to PTB, they have three RRMs. . Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	512
KOG0721|consensus	230		99.91
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.85
KOG0691|consensus	296		99.84
KOG0713|consensus	336		99.84
PRK14288	369	chaperone protein DnaJ; Provisional	99.74
PRK14279	392	chaperone protein DnaJ; Provisional	99.72
PRK14296	372	chaperone protein DnaJ; Provisional	99.71
KOG0712|consensus	337		99.7
PRK14286	372	chaperone protein DnaJ; Provisional	99.7
KOG0716|consensus	279		99.68
KOG0717|consensus	508		99.68
KOG0718|consensus	546		99.67
PRK14294	366	chaperone protein DnaJ; Provisional	99.66
PRK14282	369	chaperone protein DnaJ; Provisional	99.66
PRK14285	365	chaperone protein DnaJ; Provisional	99.66
PRK14295	389	chaperone protein DnaJ; Provisional	99.66
PRK14277	386	chaperone protein DnaJ; Provisional	99.66
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.66
PRK14297	380	chaperone protein DnaJ; Provisional	99.65
PRK14301	373	chaperone protein DnaJ; Provisional	99.65
PRK14287	371	chaperone protein DnaJ; Provisional	99.65
PRK14283	378	chaperone protein DnaJ; Provisional	99.65
PRK14284	391	chaperone protein DnaJ; Provisional	99.64
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.64
PRK14276	380	chaperone protein DnaJ; Provisional	99.64
PRK14299	291	chaperone protein DnaJ; Provisional	99.64
PRK10767	371	chaperone protein DnaJ; Provisional	99.63
PRK14278	378	chaperone protein DnaJ; Provisional	99.62
PRK14291	382	chaperone protein DnaJ; Provisional	99.62
PRK14281	397	chaperone protein DnaJ; Provisional	99.62
PRK14298	377	chaperone protein DnaJ; Provisional	99.62
PRK14280	376	chaperone protein DnaJ; Provisional	99.62
PRK14289	386	chaperone protein DnaJ; Provisional	99.61
KOG0715|consensus	288		99.59
PRK14290	365	chaperone protein DnaJ; Provisional	99.58
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.57
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.56
PRK14300	372	chaperone protein DnaJ; Provisional	99.55
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.55
KOG0719|consensus	264		99.55
PRK14292	371	chaperone protein DnaJ; Provisional	99.55
PRK14293	374	chaperone protein DnaJ; Provisional	99.54
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.53
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.51
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.51
KOG1150|consensus	250		99.49
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.47
PRK05014	171	hscB co-chaperone HscB; Provisional	99.44
PRK03578	176	hscB co-chaperone HscB; Provisional	99.4
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.4
PRK00294	173	hscB co-chaperone HscB; Provisional	99.38
PRK01356	166	hscB co-chaperone HscB; Provisional	99.37
KOG0720|consensus	490		99.35
PHA03102	153	Small T antigen; Reviewed	99.35
KOG0722|consensus	329		99.25
KOG0624|consensus	504		99.2
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	99.2
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	99.14
KOG0714|consensus	306		99.09
KOG0550|consensus	486		99.06
PTZ00100	116	DnaJ chaperone protein; Provisional	99.03
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	98.99
PRK01773	173	hscB co-chaperone HscB; Provisional	98.95
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.95
PHA02624	647	large T antigen; Provisional	98.9
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	98.8
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	98.71
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	98.67
KOG0122|consensus	270		98.63
KOG0130|consensus	170		98.62
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.62
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	98.53
KOG0144|consensus	510		98.45
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	98.3
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	98.27
KOG0144|consensus	510		98.24
PLN03120	260	nucleic acid binding protein; Provisional	98.22
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	98.21
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	98.21
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	98.09
smart00360	71	RRM RNA recognition motif.	98.09
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	98.06
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	98.04
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	98.02
KOG0114|consensus	124		98.01
smart00362	72	RRM_2 RNA recognition motif.	98.0
KOG0148|consensus	321		97.99
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	97.94
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	97.93
KOG0146|consensus	371		97.93
KOG4206|consensus	221		97.92
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	97.92
PLN03121	243	nucleic acid binding protein; Provisional	97.91
KOG1789|consensus	2235		97.9
KOG0117|consensus	506		97.89
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	97.89
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	97.88
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	97.87
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	97.84
KOG0113|consensus	335		97.83
smart00361	70	RRM_1 RNA recognition motif.	97.78
KOG0107|consensus	195		97.78
smart00360	71	RRM RNA recognition motif.	97.77
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	97.72
KOG0132|consensus	894		97.72
KOG4207|consensus	256		97.71
KOG0149|consensus	247		97.7
KOG0145|consensus	360		97.67
smart00362	72	RRM_2 RNA recognition motif.	97.67
KOG0121|consensus	153		97.66
KOG0568|consensus	342		97.65
PLN03213	759	repressor of silencing 3; Provisional	97.65
PF15023	166	DUF4523: Protein of unknown function (DUF4523)	97.64
KOG0145|consensus	360		97.62
COG0724	306	RNA-binding proteins (RRM domain) [General functio	97.61
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	97.57
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	97.53
KOG0125|consensus	376		97.44
KOG0111|consensus	298		97.44
PLN03120	260	nucleic acid binding protein; Provisional	97.42
KOG0127|consensus	678		97.41
KOG0105|consensus	241		97.4
KOG0153|consensus	377		97.38
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	97.32
KOG0415|consensus	479		97.2
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	97.19
PLN03121	243	nucleic acid binding protein; Provisional	97.17
KOG0148|consensus	321		97.14
smart00361	70	RRM_1 RNA recognition motif.	97.05
KOG0108|consensus	435		96.99
KOG3192|consensus	168		96.91
KOG0131|consensus	203		96.83
KOG0723|consensus	112		96.82
KOG0124|consensus	544		96.76
KOG0107|consensus	195		96.69
KOG4206|consensus	221		96.69
KOG0123|consensus	369		96.62
KOG0123|consensus	369		96.6
KOG1190|consensus	492		96.5
KOG0147|consensus	549		96.47
KOG0130|consensus	170		96.42
KOG0127|consensus	678		96.4
KOG4207|consensus	256		96.37
KOG0153|consensus	377		96.32
KOG0109|consensus	346		96.22
COG0724	306	RNA-binding proteins (RRM domain) [General functio	96.13
KOG0131|consensus	203		96.12
KOG0149|consensus	247		96.09
KOG0110|consensus	725		96.09
KOG0122|consensus	270		96.06
KOG0117|consensus	506		96.0
KOG4208|consensus	214		95.95
KOG0126|consensus	219		95.87
KOG0113|consensus	335		95.81
KOG1456|consensus	494		95.54
KOG0110|consensus	725		95.49
KOG0114|consensus	124		95.46
PF15023	166	DUF4523: Protein of unknown function (DUF4523)	95.39
KOG4661|consensus	940		95.28
KOG0124|consensus	544		95.07
KOG1456|consensus	494		95.03
KOG0431|consensus	453		94.98
KOG0121|consensus	153		94.93
KOG4212|consensus	608		94.9
PF14605	53	Nup35_RRM_2: Nup53/35/40-type RNA recognition moti	94.81
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	94.69
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	94.67
KOG4205|consensus	311		94.25
KOG0533|consensus	243		94.08
KOG0132|consensus	894		94.05
KOG4209|consensus	231		93.92
KOG0146|consensus	371		93.76
KOG4454|consensus	267		93.66
PLN03213	759	repressor of silencing 3; Provisional	93.36
KOG0109|consensus	346		93.19
KOG1029|consensus	1118		93.15
KOG4660|consensus	549		93.07
KOG0125|consensus	376		92.93
KOG0151|consensus	877		92.87
KOG0106|consensus	216		92.83
KOG4660|consensus	549		92.69
KOG0105|consensus	241		92.6
PF14605	53	Nup35_RRM_2: Nup53/35/40-type RNA recognition moti	92.41
COG5175	480	MOT2 Transcriptional repressor [Transcription]	92.25
KOG0108|consensus	435		92.16
KOG0116|consensus	419		91.71
KOG1190|consensus	492		91.65
KOG1855|consensus	484		91.3
KOG0147|consensus	549		90.99
KOG4205|consensus	311		90.78
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	90.73
KOG2314|consensus	698		90.7
KOG1855|consensus	484		88.86
KOG0106|consensus	216		88.6
KOG0533|consensus	243		88.59
KOG0415|consensus	479		87.55
KOG2135|consensus	526		87.18
KOG4208|consensus	214		86.88
KOG0111|consensus	298		86.72
KOG4211|consensus	510		85.85
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	84.57
KOG0126|consensus	219		84.5
KOG4212|consensus	608		83.85
KOG2314|consensus	698		83.07
PF05172	100	Nup35_RRM: Nup53/35/40-type RNA recognition motif;	82.69
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	81.95
KOG2202|consensus	260		81.27
KOG0120|consensus	500		81.27
KOG1548|consensus	382		80.3

>KOG0721|consensus

Probab=99.91  E-value=1.1e-25  Score=216.09  Aligned_cols=155  Identities=19%  Similarity=0.222  Sum_probs=127.0

Q ss_pred             CCcccccCCCceeeecccccc-ccccccccccccCCCCCCCCCCCCCCCCCCcccccccc------cCCCCCCccccccc
Q psy3926         164 NLFPTADKSSHLFPIADKSSN-LFPSADKSSNIFSSSSKPRNVFPSGLFPSANVSSNIFA------SSDRTLPEPHISWS  236 (512)
Q Consensus       164 ~~f~~~~s~~~f~~~~~~~~~-ll~~~t~~~~p~~~~~~~r~~~~~~~~p~~~~~~~~~~------~s~~~~~~~~~~w~  236 (512)
                      .-|+|||+|+||+||+.++.+ ++.|.|++.+|+...  +......|.|..|..+++.+.      .+.++.+.++++|.
T Consensus         3 ~~~eYDE~g~tf~yflls~~~~i~~P~Ty~~i~~~~~--~~~~~~~c~c~~c~~~r~~~~~~~~k~~~~~~~i~lv~~W~   80 (230)
T KOG0721|consen    3 QDYEYDESGNTFPYFLLSFLAIILLPMTYLLIPRNPE--PPKRKEECQCHGCDKKRRKKAKVSPKSISTKRKVFLVVGWA   80 (230)
T ss_pred             cccccccccCccHHHHHHHHHHHHHHHHHHHhccccc--hhhhhhHHhhhhhhhhhhhhcccCcccchhHHHHHHHHHHH
Confidence            359999999999999999999 999999999995222  222334577877766555333      12355677789999


Q ss_pred             cccchhhh---hcccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhH
Q psy3926         237 FPAIPLSS---IMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAA  313 (512)
Q Consensus       237 ~~~~~~~~---~~~~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~  313 (512)
                      +..+++..   ...+....|||+||||+++++..|||+|||+|+++|||||++...+.++.|..|.+||+.|+|+..|.+
T Consensus        81 v~~fL~y~i~~~~~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN  160 (230)
T KOG0721|consen   81 VIAFLIYKIMNSRRERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSREN  160 (230)
T ss_pred             HHHHHHHHHhhhhHHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHH
Confidence            99888544   456667899999999999999999999999999999999998645677899999999999999999999


Q ss_pred             HHHHHHH
Q psy3926         314 YDSVIRR  320 (512)
Q Consensus       314 YD~~~~~  320 (512)
                      |..+++.
T Consensus       161 ~ekYG~P  167 (230)
T KOG0721|consen  161 WEKYGNP  167 (230)
T ss_pred             HHHhCCC
Confidence            9999764

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=7.7e-22  Score=204.91  Aligned_cols=74  Identities=45%  Similarity=0.636  Sum_probs=70.1

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHHHH
Q psy3926         250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEE  323 (512)
Q Consensus       250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~~~  323 (512)
                      ...|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||++|+.||+++.+..+
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~   75 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK   75 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence            35799999999999999999999999999999999998899999999999999999999999999999987543

>KOG0691|consensus

Probab=99.84  E-value=3.5e-21  Score=195.47  Aligned_cols=104  Identities=45%  Similarity=0.646  Sum_probs=98.9

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHHHHHHHHhHh
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEVKIRNSK  330 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~~~~~~r~~~  330 (512)
                      ..|||.||||+.+|+..+|++|||..+++|||||||+||.|.+.|+.|.+||+||+|+.+|..||.++........+...
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~~~~d~   83 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQGREDQ   83 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccchhhhhH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999998888888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Q psy3926         331 LDATRKKFKEDLERREKEAENERY  354 (512)
Q Consensus       331 ~~~~rrk~~eeLe~rE~e~~~~~~  354 (512)
                      .+..++.+..++++++..+.....
T Consensus        84 ~~~~r~~f~~dl~~~~~~~~a~~~  107 (296)
T KOG0691|consen   84 ADGFRKKFGSDLFERERGALALLK  107 (296)
T ss_pred             HHHHHHHhhhhhhhhHHHHHhHHh
Confidence            999999999999999998876654

>KOG0713|consensus

Probab=99.84  E-value=1.9e-21  Score=197.72  Aligned_cols=80  Identities=43%  Similarity=0.590  Sum_probs=72.9

Q ss_pred             hhcccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHHHH
Q psy3926         244 SIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEE  323 (512)
Q Consensus       244 ~~~~~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~~~  323 (512)
                      +.......+|||+||||+++|+..|||+|||+||++|||||||++|.|.+.|+.|+.||+||+||++|+.||.+|.....
T Consensus         8 ~~~~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~   87 (336)
T KOG0713|consen    8 GAEAVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLK   87 (336)
T ss_pred             hhhhhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhc
Confidence            33334457899999999999999999999999999999999999999999999999999999999999999999966543

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=2e-18  Score=181.46  Aligned_cols=70  Identities=41%  Similarity=0.684  Sum_probs=66.6

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      +.|||+||||+++||.+|||+|||+||++||||+|+++++|.++|+.|++||+||+||.+|+.||+++..
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~   71 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK   71 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence            4699999999999999999999999999999999987788999999999999999999999999999864

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.72  E-value=8.2e-18  Score=178.08  Aligned_cols=69  Identities=42%  Similarity=0.631  Sum_probs=66.3

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIR  319 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~  319 (512)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+++++|.++|+.|++||+||+||++|+.||+++.
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~   76 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR   76 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence            469999999999999999999999999999999998888899999999999999999999999999975

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1e-17  Score=176.23  Aligned_cols=69  Identities=39%  Similarity=0.555  Sum_probs=65.3

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+ ++.|.++|++|++||+||+||.+|+.||+++..
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~   71 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQFGHA   71 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CchHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence            469999999999999999999999999999999997 478999999999999999999999999998864

>KOG0712|consensus

Probab=99.70  E-value=1.7e-17  Score=170.66  Aligned_cols=69  Identities=48%  Similarity=0.678  Sum_probs=64.8

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKE  322 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~~  322 (512)
                      +..||+||||+++||.+|||+|||+||++|||||||+   |.++|++|..||+||+||++|..||+++....
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~   71 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGL   71 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence            5689999999999999999999999999999999985   78999999999999999999999999996543

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=1.9e-17  Score=174.22  Aligned_cols=70  Identities=37%  Similarity=0.615  Sum_probs=66.5

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+++++|.++|++|++||+||+||.+|+.||+++..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   72 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKA   72 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCch
Confidence            4699999999999999999999999999999999987788999999999999999999999999998864

>KOG0716|consensus

Probab=99.68  E-value=4.7e-17  Score=161.43  Aligned_cols=74  Identities=38%  Similarity=0.592  Sum_probs=69.7

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEV  324 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~~~~  324 (512)
                      .+|+|+||||+++|+.++|||+||+|+++||||+++++|++.++|+.|+.||+||+||.+|..||.++......
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l  103 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKL  103 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHH
Confidence            56999999999999999999999999999999999999999999999999999999999999999998765433

>KOG0717|consensus

Probab=99.68  E-value=1e-15  Score=160.71  Aligned_cols=69  Identities=42%  Similarity=0.643  Sum_probs=64.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-KKAIETFHLLSKAIEVLLDKSARAAYDSVIR  319 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~-~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~  319 (512)
                      .++||+||||.++|+..+||++||+|||+|||||||+. .+|.++|+.|+.||+|||||..|+.||.+..
T Consensus         7 ~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre   76 (508)
T KOG0717|consen    7 KRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE   76 (508)
T ss_pred             hhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence            46999999999999999999999999999999998865 5789999999999999999999999998744

>KOG0718|consensus

Probab=99.67  E-value=5.7e-17  Score=170.08  Aligned_cols=75  Identities=37%  Similarity=0.626  Sum_probs=68.0

Q ss_pred             cCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hHHHHHHHHHHHHHHHccChhhhhHHHHHHHHHH
Q psy3926         248 DIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD---KKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKE  322 (512)
Q Consensus       248 ~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~---~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~~  322 (512)
                      ++.+.|||.+|||+++||.+||++|||++++.|||||..+.   ..|++.|+.|..|||||+||.+|+.||.+|....
T Consensus         5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL   82 (546)
T KOG0718|consen    5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGL   82 (546)
T ss_pred             ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccc
Confidence            55677999999999999999999999999999999998642   2488999999999999999999999999997654

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=1.1e-16  Score=168.22  Aligned_cols=70  Identities=44%  Similarity=0.663  Sum_probs=66.6

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ..|||+||||+++|+.+|||+|||+||++||||+++++++|.++|..|++||++|+||.+|+.||+++..
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~   72 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHE   72 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccc
Confidence            4699999999999999999999999999999999987788999999999999999999999999999864

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=9.6e-17  Score=168.71  Aligned_cols=70  Identities=31%  Similarity=0.572  Sum_probs=65.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-KKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~-~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ..|||+||||+++||.+|||+|||+||++||||+|+++ +.|.++|+.|++||++|+||.+|+.||.++..
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~   73 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV   73 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence            46999999999999999999999999999999999864 67889999999999999999999999998754

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=8.8e-17  Score=168.81  Aligned_cols=69  Identities=42%  Similarity=0.631  Sum_probs=66.1

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      .|||+||||+++||.+|||+|||+|+++||||+|++++.|.++|++|++||++|+||.+|..||.++..
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~   71 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHT   71 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence            599999999999999999999999999999999988888999999999999999999999999998764

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=1e-16  Score=169.61  Aligned_cols=66  Identities=42%  Similarity=0.649  Sum_probs=63.8

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDS  316 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~  316 (512)
                      ..|||+||||+++|+.+|||+|||+||++||||++++++.|.++|+.|++||++|+||.+|+.||+
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~   73 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE   73 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence            569999999999999999999999999999999998778899999999999999999999999998

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=1.3e-16  Score=168.80  Aligned_cols=70  Identities=39%  Similarity=0.621  Sum_probs=66.5

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ..|||+||||+++|+.+|||+|||+||++||||++++++.|.++|+.|++||++|+||.+|+.||.++..
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~   73 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHA   73 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccc
Confidence            4699999999999999999999999999999999987788999999999999999999999999998854

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.66  E-value=1.6e-16  Score=125.86  Aligned_cols=63  Identities=40%  Similarity=0.669  Sum_probs=59.9

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHHHHHHHccChhhhhHHH
Q psy3926         253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDK-KAIETFHLLSKAIEVLLDKSARAAYD  315 (512)
Q Consensus       253 d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~-~a~~~F~~I~~AYevLsDp~~R~~YD  315 (512)
                      |||+||||+++++.++|+++|+++++.+|||+++++. .+.+.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            6899999999999999999999999999999987655 58899999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.65  E-value=1.4e-16  Score=168.17  Aligned_cols=70  Identities=39%  Similarity=0.589  Sum_probs=66.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ..|||+||||+++|+.++||+|||+||++||||+++++++|+++|+.|++||++|+||.+|+.||+++..
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~   72 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTA   72 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence            3599999999999999999999999999999999987788999999999999999999999999998754

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.65  E-value=1.5e-16  Score=167.61  Aligned_cols=70  Identities=43%  Similarity=0.655  Sum_probs=66.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ..|||+||||+++|+.++||+|||+||++||||+++++++|.++|+.|++||+||+||.+|+.||.++..
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~   72 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA   72 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence            4699999999999999999999999999999999987788999999999999999999999999998854

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.65  E-value=1.7e-16  Score=166.95  Aligned_cols=69  Identities=32%  Similarity=0.478  Sum_probs=64.9

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+ +++|.++|+.|++||++|+||.+|+.||+++..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~   71 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK-APDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT   71 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence            359999999999999999999999999999999997 478889999999999999999999999998853

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.65  E-value=1.7e-16  Score=167.42  Aligned_cols=69  Identities=35%  Similarity=0.518  Sum_probs=65.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ..|||+||||+++|+.+|||+|||+||++||||+|++ +.|.++|++|++||++|+||.+|+.||+++..
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~   72 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHA   72 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhccc
Confidence            5699999999999999999999999999999999984 78999999999999999999999999998854

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=2.1e-16  Score=167.41  Aligned_cols=69  Identities=42%  Similarity=0.660  Sum_probs=65.9

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      .|||+||||+++|+.+|||+|||+||++||||+|++++.|.++|+.|++||++|+||.+|+.||+++..
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   69 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKD   69 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence            389999999999999999999999999999999998888999999999999999999999999999864

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.64  E-value=2e-16  Score=168.76  Aligned_cols=66  Identities=44%  Similarity=0.687  Sum_probs=61.8

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ..|||+||||+++||.+|||+|||+||++||||+|++    .++|++|++||++|+||.+|+.||.++..
T Consensus        27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~   92 (421)
T PTZ00037         27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEE   92 (421)
T ss_pred             chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcch
Confidence            5699999999999999999999999999999999863    37999999999999999999999998864

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=2.2e-16  Score=166.68  Aligned_cols=69  Identities=36%  Similarity=0.519  Sum_probs=64.9

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ..|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|+.|++||++|+||.+|+.||+++..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   71 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINK-EPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAA   71 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence            469999999999999999999999999999999998 477899999999999999999999999998753

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=2.9e-16  Score=160.23  Aligned_cols=69  Identities=33%  Similarity=0.479  Sum_probs=65.1

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ..|||+||||+++||.+|||+|||+||++||||+++ ++.+.++|+.|++||++|+||.+|+.||.++..
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~   71 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT   71 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence            469999999999999999999999999999999997 578899999999999999999999999998754

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.63  E-value=3.5e-16  Score=164.55  Aligned_cols=70  Identities=46%  Similarity=0.684  Sum_probs=66.3

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ..|||+||||+++|+.+|||+|||+||++||||+|++++.|.++|..|++||++|+||.+|+.||.++..
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~   72 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA   72 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence            4699999999999999999999999999999999987788999999999999999999999999998753

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=3.3e-16  Score=165.15  Aligned_cols=67  Identities=43%  Similarity=0.578  Sum_probs=64.2

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926         252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIR  319 (512)
Q Consensus       252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~  319 (512)
                      .|||+||||+++|+.+|||+|||+||++||||+|+ +++|.++|+.|++||++|+||.+|+.||+++.
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~   69 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGD   69 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccCC
Confidence            59999999999999999999999999999999998 57899999999999999999999999999875

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=3.8e-16  Score=164.95  Aligned_cols=69  Identities=33%  Similarity=0.535  Sum_probs=65.1

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ..|||+||||+++|+.++||+|||+||++||||+|++ +.|.++|+.|++||++|+||.+|+.||.++..
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~   70 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA   70 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence            3599999999999999999999999999999999984 77889999999999999999999999998864

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=3.8e-16  Score=165.67  Aligned_cols=69  Identities=42%  Similarity=0.651  Sum_probs=66.0

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      .|||+||||+++|+.+|||+|||+||++||||++++++.|.++|+.|++||++|+||.+|+.||.++..
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~   71 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHA   71 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccch
Confidence            599999999999999999999999999999999987788899999999999999999999999998864

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=3.6e-16  Score=164.84  Aligned_cols=69  Identities=45%  Similarity=0.624  Sum_probs=64.8

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+ ++.|.++|+.|++||++|+||.+|+.||+++..
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   72 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHA   72 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccC-ChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence            359999999999999999999999999999999997 477889999999999999999999999998853

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=4.9e-16  Score=163.76  Aligned_cols=69  Identities=39%  Similarity=0.556  Sum_probs=64.8

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ..|||+||||+++|+.+|||+|||+||++||||++++ +.|.++|++|++||++|+||.+|+.||+++..
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~   71 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFGHA   71 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence            3599999999999999999999999999999999974 67899999999999999999999999998753

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=7.6e-16  Score=162.80  Aligned_cols=70  Identities=40%  Similarity=0.634  Sum_probs=66.8

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ..|||+||||+++|+.+|||+|||+||++||||+++++++|.++|+.|++||++|+||.+|+.||.++..
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~   73 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA   73 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence            4699999999999999999999999999999999998888999999999999999999999999998764

>KOG0715|consensus

Probab=99.59  E-value=1.4e-15  Score=155.04  Aligned_cols=70  Identities=37%  Similarity=0.536  Sum_probs=66.1

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRK  321 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~  321 (512)
                      ..|||+||||+++|+..|||+||++||++||||.|.+ .+|.+.|++|.+||++|+|+++|..||..+...
T Consensus        42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~  111 (288)
T KOG0715|consen   42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ  111 (288)
T ss_pred             CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence            3499999999999999999999999999999999985 589999999999999999999999999998764

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=1.8e-15  Score=158.97  Aligned_cols=69  Identities=39%  Similarity=0.574  Sum_probs=64.9

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDK-KAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~-~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      .|||+||||+++|+.+|||+|||+|+++||||++++++ .|.++|+.|++||++|+||.+|+.||.++..
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~   72 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV   72 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence            59999999999999999999999999999999998664 7889999999999999999999999998753

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.57  E-value=2.5e-15  Score=157.04  Aligned_cols=67  Identities=46%  Similarity=0.678  Sum_probs=63.6

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       253 d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      |||+||||+++|+.++||+|||+||++||||+++ ++.+.++|+.|++||++|+|+.+|..||.++..
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~   67 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHA   67 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccc
Confidence            7999999999999999999999999999999997 567889999999999999999999999998754

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.56  E-value=4.1e-15  Score=167.71  Aligned_cols=71  Identities=20%  Similarity=0.331  Sum_probs=66.3

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHH
Q psy3926         250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRK  321 (512)
Q Consensus       250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~  321 (512)
                      .+.+||+||||+++||..+||+|||+||++||||+++++ .|.+.|+.|.+||+||+||.+|+.||.+|...
T Consensus       571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~G  641 (1136)
T PTZ00341        571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDG  641 (1136)
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence            467999999999999999999999999999999999874 68899999999999999999999999987654

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=3.6e-15  Score=157.05  Aligned_cols=68  Identities=35%  Similarity=0.519  Sum_probs=64.1

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      .|||+||||+++||.+|||+|||+|+++||||+++ ++.+.++|..|++||++|+|+.+|+.||.++..
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~   70 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD   70 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccc
Confidence            59999999999999999999999999999999997 467889999999999999999999999998753

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.55  E-value=5.4e-15  Score=151.90  Aligned_cols=67  Identities=33%  Similarity=0.507  Sum_probs=63.4

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926         252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIR  319 (512)
Q Consensus       252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~  319 (512)
                      .|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|..|++||++|+||.+|+.||.++.
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~-~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~   70 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ   70 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            59999999999999999999999999999999987 46789999999999999999999999999873

>KOG0719|consensus

Probab=99.55  E-value=3.6e-15  Score=145.13  Aligned_cols=73  Identities=41%  Similarity=0.630  Sum_probs=66.2

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHH
Q psy3926         249 IKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNP--DDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRK  321 (512)
Q Consensus       249 ~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~--~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~  321 (512)
                      ....|+|+||||.++|+..+|++||++|+++||||+++  +..+|.+.|++|+.||+||+|.++|+.||..|...
T Consensus        11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id   85 (264)
T KOG0719|consen   11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID   85 (264)
T ss_pred             ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence            34569999999999999999999999999999999994  34578899999999999999999999999987654

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=4.3e-15  Score=156.31  Aligned_cols=68  Identities=44%  Similarity=0.643  Sum_probs=64.4

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      +|||+||||+++|+.++||+|||+|+++||||+++ ++.|.++|+.|++||++|+||.+|+.||.++..
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~   69 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA   69 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence            49999999999999999999999999999999997 578899999999999999999999999998753

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=6.1e-15  Score=155.42  Aligned_cols=68  Identities=35%  Similarity=0.569  Sum_probs=64.2

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      .|||+||||+++|+.++||+|||+|+++||||+++ ++.|.++|+.|++||++|+||.+|+.||.++..
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~   70 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNK-EPGAEDRFKEINRAYEVLSDPETRARYDQFGEA   70 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CcCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence            59999999999999999999999999999999997 467889999999999999999999999998753

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.53  E-value=1.4e-14  Score=112.92  Aligned_cols=58  Identities=47%  Similarity=0.689  Sum_probs=54.3

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ChHHHHHHHHHHHHHHHccChh
Q psy3926         252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPD-DKKAIETFHLLSKAIEVLLDKS  309 (512)
Q Consensus       252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~-~~~a~~~F~~I~~AYevLsDp~  309 (512)
                      .|||+||||+++++.++|+++|+++++.||||++++ .+.+.+.|..|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            389999999999999999999999999999999986 5678899999999999999985

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.51  E-value=2.9e-14  Score=109.14  Aligned_cols=55  Identities=53%  Similarity=0.822  Sum_probs=51.9

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccC
Q psy3926         253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLD  307 (512)
Q Consensus       253 d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsD  307 (512)
                      |||+||||+++++.++|+++||+|+++||||++++...+.+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999999997546788999999999999987

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.51  E-value=3.6e-15  Score=155.92  Aligned_cols=151  Identities=21%  Similarity=0.203  Sum_probs=110.5

Q ss_pred             CCcccccCCCceeeecccccc-ccccccccccccCCCCCCCCCCCCCCCCCCccc------ccccccCCCCCCccccccc
Q psy3926         164 NLFPTADKSSHLFPIADKSSN-LFPSADKSSNIFSSSSKPRNVFPSGLFPSANVS------SNIFASSDRTLPEPHISWS  236 (512)
Q Consensus       164 ~~f~~~~s~~~f~~~~~~~~~-ll~~~t~~~~p~~~~~~~r~~~~~~~~p~~~~~------~~~~~~s~~~~~~~~~~w~  236 (512)
                      .-|.|||+|-++-||+.+... ...|-|| .....++.+-....-+|.|..|...      ..+|   .++.+..++||.
T Consensus         3 ~~YeYDE~g~~~p~fvL~gl~~vvlpmTY-~~i~gpsaSKe~~~vr~~~q~~Rpkdknv~rKSIf---~lR~If~ivgWl   78 (610)
T COG5407           3 YDYEYDESGLASPYFVLSGLVPVVLPMTY-DLIEGPSASKELRRVRCACQGCRPKDKNVSRKSIF---KLRKIFTIVGWL   78 (610)
T ss_pred             cccccccccccchHHHHhhhhheeeeeeh-hheeCCcccchhhcchhhhhhcCccccchhhhHHH---hhhHHHHHHHHH
Confidence            348999999999887776665 5555554 3333321111111223445554321      1133   457788899999


Q ss_pred             cccchhhhhc----ccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-----hHHHHHHHHHHHHHHHccC
Q psy3926         237 FPAIPLSSIM----ADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-----KKAIETFHLLSKAIEVLLD  307 (512)
Q Consensus       237 ~~~~~~~~~~----~~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~-----~~a~~~F~~I~~AYevLsD  307 (512)
                      ...++++.+.    ......|||+||||+.+++..+||++||+|+.+|||||.+.-     .+-++.+.+|++||..|+|
T Consensus        79 ~i~~L~~~I~~~k~~~~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd  158 (610)
T COG5407          79 VISYLISNIRTLKIEYRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTD  158 (610)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhh
Confidence            9988865543    244578999999999999999999999999999999998751     3567899999999999999


Q ss_pred             hhhhhHHHHHH
Q psy3926         308 KSARAAYDSVI  318 (512)
Q Consensus       308 p~~R~~YD~~~  318 (512)
                      ...|.+|-.+|
T Consensus       159 ~k~renyl~yG  169 (610)
T COG5407         159 KKRRENYLNYG  169 (610)
T ss_pred             HHHHHHHHhcC
Confidence            99999998884

>KOG1150|consensus

Probab=99.49  E-value=1e-12  Score=125.50  Aligned_cols=91  Identities=27%  Similarity=0.516  Sum_probs=74.6

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHccChhhhhHHHHHHHHHHHHHHH
Q psy3926         249 IKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-KKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEVKIR  327 (512)
Q Consensus       249 ~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~-~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~~~~~~r  327 (512)
                      +-++|+|+||.|.++.+.++||+.||+|++..|||||+++ +.|..+|..+.+||.+|-|+..|...+....+...+  -
T Consensus        50 yfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~~y~~ak~~--~  127 (250)
T KOG1150|consen   50 YFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLDVYTAAKNR--L  127 (250)
T ss_pred             ccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--H
Confidence            3477999999999999999999999999999999999998 679999999999999999999888777665543322  2


Q ss_pred             hHhHHHHHHHHHHH
Q psy3926         328 NSKLDATRKKFKED  341 (512)
Q Consensus       328 ~~~~~~~rrk~~ee  341 (512)
                      ...|.+++++++.+
T Consensus       128 ~~~~~ekkkklkKe  141 (250)
T KOG1150|consen  128 EKVMSEKKKKLKKE  141 (250)
T ss_pred             HHHHHHHHHHHHhc
Confidence            34455666666553

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=6.4e-14  Score=132.24  Aligned_cols=68  Identities=46%  Similarity=0.689  Sum_probs=64.7

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChH-HHHHHHHHHHHHHHccChhhhhHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKK-AIETFHLLSKAIEVLLDKSARAAYDSVI  318 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~-a~~~F~~I~~AYevLsDp~~R~~YD~~~  318 (512)
                      ..|||+||||+++|+..+|++|||+++++||||++++++. +.+.|..|++||++|+|+..|..||..+
T Consensus         5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            4599999999999999999999999999999999998885 9999999999999999999999999975

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.44  E-value=5.8e-13  Score=126.40  Aligned_cols=70  Identities=23%  Similarity=0.319  Sum_probs=61.2

Q ss_pred             CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHccChhhhhHHHHHHHHH
Q psy3926         252 LDLYGLLELTID--CSEQDIRSAYRKKALKCHPDKNPDDKK-----AIETFHLLSKAIEVLLDKSARAAYDSVIRRK  321 (512)
Q Consensus       252 ~d~YeiLgv~~~--As~~eIKkAYRkLa~k~HPDk~~~~~~-----a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~  321 (512)
                      .|||+||||++.  ++..+|+++||+|+++||||+..+.+.     +.+.|..|++||++|+||.+|+.|+..+.+.
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g~   77 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGF   77 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcCC
Confidence            389999999996  788999999999999999999765432     5678999999999999999999999876643

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.40  E-value=1.5e-12  Score=124.04  Aligned_cols=71  Identities=25%  Similarity=0.312  Sum_probs=61.2

Q ss_pred             CCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChHH-----HHHHHHHHHHHHHccChhhhhHHHHHHHHH
Q psy3926         251 DLDLYGLLELTID--CSEQDIRSAYRKKALKCHPDKNPDDKKA-----IETFHLLSKAIEVLLDKSARAAYDSVIRRK  321 (512)
Q Consensus       251 ~~d~YeiLgv~~~--As~~eIKkAYRkLa~k~HPDk~~~~~~a-----~~~F~~I~~AYevLsDp~~R~~YD~~~~~~  321 (512)
                      ..|||+||||++.  ++..+|+++||+|+++||||++++.+.+     .+.+..|++||++|+||.+|+.|+..+.+.
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~   82 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGV   82 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCC
Confidence            3699999999996  6899999999999999999998765543     345689999999999999999999876543

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.40  E-value=3e-13  Score=149.92  Aligned_cols=69  Identities=36%  Similarity=0.522  Sum_probs=64.8

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHH
Q psy3926         252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRK  321 (512)
Q Consensus       252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~  321 (512)
                      .|||+||||+++|+..+||+|||+|+++||||++++ +.+..+|+.|++||++|+||.+|+.||.++...
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG   70 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDG   70 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence            499999999999999999999999999999999975 778899999999999999999999999987643

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.38  E-value=3.2e-12  Score=121.50  Aligned_cols=71  Identities=24%  Similarity=0.325  Sum_probs=63.2

Q ss_pred             CCCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         250 KDLDLYGLLELTID--CSEQDIRSAYRKKALKCHPDKNPDDKK-----AIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       250 ~~~d~YeiLgv~~~--As~~eIKkAYRkLa~k~HPDk~~~~~~-----a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      +..|||++|||++.  .+..+|+++||+|+++||||++.+.+.     +.+.|..|++||++|+||.+|+.|+..+.+
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g   79 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSG   79 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcC
Confidence            46799999999997  678999999999999999999876543     567899999999999999999999987764

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.37  E-value=2.4e-12  Score=121.59  Aligned_cols=69  Identities=23%  Similarity=0.301  Sum_probs=60.0

Q ss_pred             CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH---HHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         252 LDLYGLLELTID--CSEQDIRSAYRKKALKCHPDKNPDDKK---AIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       252 ~d~YeiLgv~~~--As~~eIKkAYRkLa~k~HPDk~~~~~~---a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      .|||++|||++.  ++..+|+++||+|+++||||++.+..+   +...+..|++||++|+||.+|+.|+..+.+
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g   75 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQN   75 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccC
Confidence            489999999997  789999999999999999999865322   335688999999999999999999887754

>KOG0720|consensus

Probab=99.35  E-value=2.6e-12  Score=135.39  Aligned_cols=74  Identities=41%  Similarity=0.641  Sum_probs=68.6

Q ss_pred             ccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHH
Q psy3926         247 ADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRK  321 (512)
Q Consensus       247 ~~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~  321 (512)
                      .+....|+|.+|||+.+++.++|||.||++|...|||||. .+.|++.|+.|+.||++|+|+.+|..||..+...
T Consensus       230 re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ke  303 (490)
T KOG0720|consen  230 RELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKE  303 (490)
T ss_pred             hhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence            3445789999999999999999999999999999999998 7899999999999999999999999999987654

>PHA03102 Small T antigen; Reviewed

Probab=99.35  E-value=5.3e-13  Score=124.28  Aligned_cols=64  Identities=25%  Similarity=0.270  Sum_probs=59.5

Q ss_pred             CcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         253 DLYGLLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       253 d~YeiLgv~~~A--s~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      .+|+||||+++|  |..+||+|||++++++|||++++    .+.|+.|++||++|+|+.+|..||.++..
T Consensus         6 ~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~   71 (153)
T PHA03102          6 ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEED   71 (153)
T ss_pred             HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence            589999999999  99999999999999999999863    37999999999999999999999998854

>KOG0722|consensus

Probab=99.25  E-value=5.8e-12  Score=124.25  Aligned_cols=74  Identities=27%  Similarity=0.477  Sum_probs=67.4

Q ss_pred             cCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHHH
Q psy3926         248 DIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKE  322 (512)
Q Consensus       248 ~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~~  322 (512)
                      ..+..|+|+||||.++++..+|.+|||+||++||||++++ +++.+.|..|..||++|.|.+.|..||-.++.-.
T Consensus        29 YCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydyaldhpd  102 (329)
T KOG0722|consen   29 YCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYALDHPD  102 (329)
T ss_pred             cccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccchhhHHhHHHHhcCch
Confidence            3456899999999999999999999999999999999985 7777999999999999999999999998876543

>KOG0624|consensus

Probab=99.20  E-value=1.1e-11  Score=127.14  Aligned_cols=71  Identities=37%  Similarity=0.492  Sum_probs=64.1

Q ss_pred             ccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---HHHHHHHHHHHHHHHccChhhhhHHHHH
Q psy3926         247 ADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDK---KAIETFHLLSKAIEVLLDKSARAAYDSV  317 (512)
Q Consensus       247 ~~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~---~a~~~F~~I~~AYevLsDp~~R~~YD~~  317 (512)
                      .....+|||.||||.++|+..||.||||++|.+||||...+..   .|+.+|.-|..|-+||+||++|+.||.-
T Consensus       389 kqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG  462 (504)
T KOG0624|consen  389 KQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG  462 (504)
T ss_pred             HHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence            3445789999999999999999999999999999999987543   3889999999999999999999999974

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=99.20  E-value=4.2e-09  Score=114.54  Aligned_cols=76  Identities=18%  Similarity=0.205  Sum_probs=64.5

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecC
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN  486 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~  486 (512)
                      ...+|-|..=..    ..+|++.|+++|+.||.|..|.|..+++|+|||+|.+.++|..|+.+  +..+.+.+|.|.++.
T Consensus       274 ~~~~l~v~nL~~----~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~  349 (481)
T TIGR01649       274 PGSVLMVSGLHQ----EKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK  349 (481)
T ss_pred             CCCEEEEeCCCC----CCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence            445777765532    14899999999999999999999888899999999999999999974  677788999999986


Q ss_pred             CC
Q psy3926         487 PD  488 (512)
Q Consensus       487 ~~  488 (512)
                      .+
T Consensus       350 ~~  351 (481)
T TIGR01649       350 QQ  351 (481)
T ss_pred             cc
Confidence            54

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=99.14  E-value=2e-10  Score=126.59  Aligned_cols=67  Identities=27%  Similarity=0.345  Sum_probs=58.6

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r  491 (512)
                      ..+|++.|+++|+.||.|.+|.|..+    .+|+|||+|.+.++|.+|+.  ++..+.+.+|.|.||..+..|
T Consensus       295 ~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~  367 (562)
T TIGR01628       295 DTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR  367 (562)
T ss_pred             CccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence            36999999999999999999988754    37999999999999999997  466777899999999876555

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>KOG0714|consensus

Probab=99.09  E-value=5.7e-11  Score=117.64  Aligned_cols=69  Identities=43%  Similarity=0.623  Sum_probs=63.0

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-KKAIETFHLLSKAIEVLLDKSARAAYDSVIR  319 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~-~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~  319 (512)
                      ..|+|.||||.++|+..+|++||++++++||||+++.. ..+..+|.+|.+||++|+|+.+|..||.++.
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence            35999999999999999999999999999999998865 2455589999999999999999999999986

>KOG0550|consensus

Probab=99.06  E-value=1.1e-10  Score=122.37  Aligned_cols=68  Identities=37%  Similarity=0.550  Sum_probs=64.5

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHccChhhhhHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-KKAIETFHLLSKAIEVLLDKSARAAYDSVI  318 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~-~~a~~~F~~I~~AYevLsDp~~R~~YD~~~  318 (512)
                      ..|||.||||.++++..+|++|||++++.||||++.++ .+++..|+.+.+||.+|+||.+|..||.-.
T Consensus       372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~  440 (486)
T KOG0550|consen  372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ  440 (486)
T ss_pred             hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence            67999999999999999999999999999999999887 689999999999999999999999999743

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.03  E-value=2.1e-10  Score=102.17  Aligned_cols=52  Identities=25%  Similarity=0.407  Sum_probs=47.0

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHcc
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLL  306 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLs  306 (512)
                      ..++|+||||++++|.+||+++||+|++++|||+.+ +   .+.|.+|++||++|.
T Consensus        64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG-s---~~~~~kIneAyevL~  115 (116)
T PTZ00100         64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG-S---TYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHHh
Confidence            459999999999999999999999999999999964 3   368899999999985

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=98.99  E-value=4.6e-10  Score=113.64  Aligned_cols=56  Identities=30%  Similarity=0.369  Sum_probs=50.4

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--C-----hHHHHHHHHHHHHHHHccC
Q psy3926         252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPD--D-----KKAIETFHLLSKAIEVLLD  307 (512)
Q Consensus       252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~--~-----~~a~~~F~~I~~AYevLsD  307 (512)
                      .|+|+||||++++|.++||++||+|+++||||++.+  .     +.|.++|+.|++||++|+.
T Consensus       200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999999999999642  1     3478999999999999975

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.95  E-value=5.5e-09  Score=99.50  Aligned_cols=68  Identities=19%  Similarity=0.286  Sum_probs=60.2

Q ss_pred             CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926         252 LDLYGLLELTID--CSEQDIRSAYRKKALKCHPDKNPDDKK-----AIETFHLLSKAIEVLLDKSARAAYDSVIR  319 (512)
Q Consensus       252 ~d~YeiLgv~~~--As~~eIKkAYRkLa~k~HPDk~~~~~~-----a~~~F~~I~~AYevLsDp~~R~~YD~~~~  319 (512)
                      .|||++|||++.  .+...+++.|+.|.+.+|||+..+...     +.+.-..|++||.+|.||-+|+.|-..+.
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~   76 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN   76 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence            499999999997  899999999999999999999765432     44577899999999999999999998777

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.95  E-value=4.7e-09  Score=98.45  Aligned_cols=58  Identities=24%  Similarity=0.297  Sum_probs=50.3

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCh-----HHHHHHHHHHHHHHHccChhhhhHHHHHHHHH
Q psy3926         264 CSEQDIRSAYRKKALKCHPDKNPDDK-----KAIETFHLLSKAIEVLLDKSARAAYDSVIRRK  321 (512)
Q Consensus       264 As~~eIKkAYRkLa~k~HPDk~~~~~-----~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~  321 (512)
                      .+..+|+++||+|+++||||+.++..     .+...|..|++||++|+||.+|+.|+..+.+.
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g~   65 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHGI   65 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCC
Confidence            57889999999999999999965432     26689999999999999999999999988743

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>PHA02624 large T antigen; Provisional

Probab=98.90  E-value=1.3e-09  Score=120.04  Aligned_cols=59  Identities=29%  Similarity=0.362  Sum_probs=55.3

Q ss_pred             CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHH
Q psy3926         252 LDLYGLLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAY  314 (512)
Q Consensus       252 ~d~YeiLgv~~~A--s~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~Y  314 (512)
                      .++|++|||+++|  +..+||+|||+++++||||+++ +   .+.|+.|+.||++|+|+.+|..|
T Consensus        11 ~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG-d---eekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG-D---EEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC-c---HHHHHHHHHHHHHHhcHHHhhhc
Confidence            4899999999999  9999999999999999999974 3   47999999999999999999998

>PF13893 RRM_5: RNA recognition motif

Probab=98.80  E-value=9.2e-09  Score=79.13  Aligned_cols=54  Identities=35%  Similarity=0.560  Sum_probs=48.4

Q ss_pred             HHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEec
Q psy3926         432 LTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYL  485 (512)
Q Consensus       432 L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa  485 (512)
                      |.++|++||+|..|.+..+++|+|+|+|.+.++|..|+.  ++..+.+.+|.|.|+
T Consensus         1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a   56 (56)
T PF13893_consen    1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA   56 (56)
T ss_dssp             HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred             ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence            678999999999999988767999999999999999997  577788899999996

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>PF13893 RRM_5: RNA recognition motif

Probab=98.71  E-value=2.1e-08  Score=77.16  Aligned_cols=53  Identities=36%  Similarity=0.577  Sum_probs=44.9

Q ss_pred             HHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEee
Q psy3926          44 LTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNY   96 (512)
Q Consensus        44 l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~   96 (512)
                      |.++|++||+|..|.+..+++|.|+|||.+.++|..|++.  ..-.-++||+|+|
T Consensus         1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~   55 (56)
T PF13893_consen    1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY   55 (56)
T ss_dssp             HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred             ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence            7899999999999999887789999999999999999983  3334567888887

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=98.67  E-value=1.1e-07  Score=87.80  Aligned_cols=66  Identities=18%  Similarity=0.164  Sum_probs=57.6

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE  490 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~  490 (512)
                      -.+|+++|+++|++||.|.+|.|..+     .+|+|||+|++.++|..|+.  ++..+.+.+|+|+|+.+++.
T Consensus        44 ~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~~  116 (144)
T PLN03134         44 WGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS  116 (144)
T ss_pred             CCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCCC
Confidence            36999999999999999999998764     38999999999999999997  35667789999999986554

>KOG0122|consensus

Probab=98.63  E-value=5.9e-08  Score=95.74  Aligned_cols=76  Identities=24%  Similarity=0.431  Sum_probs=65.9

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLT  481 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~  481 (512)
                      .+++|+|.     +...+++|++|+++|..||.|..|.|..++     +|+|||.|.+.++|.+||.  ++.|+....|.
T Consensus       188 D~~tvRvt-----NLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILr  262 (270)
T KOG0122|consen  188 DEATVRVT-----NLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILR  262 (270)
T ss_pred             ccceeEEe-----cCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEE
Confidence            45677775     223579999999999999999999998765     8999999999999999997  58999999999


Q ss_pred             EEecCCCc
Q psy3926         482 LNYLNPDV  489 (512)
Q Consensus       482 V~wa~~~~  489 (512)
                      |.|+.|.+
T Consensus       263 vEwskP~~  270 (270)
T KOG0122|consen  263 VEWSKPSN  270 (270)
T ss_pred             EEecCCCC
Confidence            99998753

>KOG0130|consensus

Probab=98.62  E-value=4.7e-08  Score=88.90  Aligned_cols=76  Identities=25%  Similarity=0.347  Sum_probs=65.0

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCC-Ccccccc--c
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNP-DVEREES--R  495 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~-~~~r~~~--~  495 (512)
                      ..||+++.+.|..||+|.+|.+..++     ||||+|+|++.+.|.+||.  ++..+.+.++.|.|+.- .|++.++  +
T Consensus        83 EatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~gp~~g~r~rr  162 (170)
T KOG0130|consen   83 EATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKGPERGKRTRR  162 (170)
T ss_pred             chhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecCCccCccccc
Confidence            48999999999999999999998776     7999999999999999997  46788999999999985 4545554  5


Q ss_pred             CCCCCC
Q psy3926         496 KQPKNP  501 (512)
Q Consensus       496 ~~s~~~  501 (512)
                      ++||.+
T Consensus       163 k~S~~r  168 (170)
T KOG0130|consen  163 KQSPER  168 (170)
T ss_pred             cccccc
Confidence            777763

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=2.2e-08  Score=99.94  Aligned_cols=76  Identities=39%  Similarity=0.494  Sum_probs=66.3

Q ss_pred             hhhhcccCCCCCcccccCCCC---CCCHHHHHHHHHHHHHHhCCCCC--CCChHHHHHHHHHHHHHHHccChhhhhHHHH
Q psy3926         242 LSSIMADIKDLDLYGLLELTI---DCSEQDIRSAYRKKALKCHPDKN--PDDKKAIETFHLLSKAIEVLLDKSARAAYDS  316 (512)
Q Consensus       242 ~~~~~~~~~~~d~YeiLgv~~---~As~~eIKkAYRkLa~k~HPDk~--~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~  316 (512)
                      +..-..+++..|+|.+|||+.   -+++.+|.++.++...+||||+.  +|+.+..+.|..|+.||++|+|+..|..||.
T Consensus        33 ~~~d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS  112 (379)
T COG5269          33 TREDFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDS  112 (379)
T ss_pred             HhhhhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccc
Confidence            445567788899999999996   58999999999999999999996  3445567899999999999999999999986


Q ss_pred             H
Q psy3926         317 V  317 (512)
Q Consensus       317 ~  317 (512)
                      .
T Consensus       113 ~  113 (379)
T COG5269         113 N  113 (379)
T ss_pred             c
Confidence            4

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=98.53  E-value=1.9e-07  Score=96.35  Aligned_cols=67  Identities=19%  Similarity=0.250  Sum_probs=60.2

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r  491 (512)
                      ..+|+++|+++|++||.|.+|.|+.+.     +|+|||+|.+.++|.+||.  ++..+.+.+|+|.|+..++.|
T Consensus       279 ~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~~  352 (352)
T TIGR01661       279 PDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAYR  352 (352)
T ss_pred             CCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCCC
Confidence            368999999999999999999998764     8999999999999999997  477788899999999887654

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>KOG0144|consensus

Probab=98.45  E-value=1.9e-07  Score=98.13  Aligned_cols=68  Identities=22%  Similarity=0.370  Sum_probs=58.8

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHHh-----hcCCCCCceEEEecCCCccccc
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKLY-----ELGLPNCPLTLNYLNPDVEREE  493 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~~-----~~~~~~~pL~V~wa~~~~~r~~  493 (512)
                      ..||.++++||++||.|++|.|+.+    .+|||||.|.+.+-|..||+.     ..+.-+.||.|+||.++.++..
T Consensus       135 ~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~  211 (510)
T KOG0144|consen  135 QCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDG  211 (510)
T ss_pred             cccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchH
Confidence            4899999999999999999999874    499999999999999999973     3455668999999998776653

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=98.30  E-value=8.8e-06  Score=90.89  Aligned_cols=75  Identities=17%  Similarity=0.193  Sum_probs=60.1

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLT  481 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~  481 (512)
                      ..++|-|.   +  ....++++.|+++|+.||.|.+|.|..+     .+|||||+|.+.++|.+|+.  ++..+.+.+|.
T Consensus       106 ~~~rLfVG---n--Lp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~Ik  180 (612)
T TIGR01645       106 IMCRVYVG---S--ISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIK  180 (612)
T ss_pred             CCCEEEEc---C--CCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceee
Confidence            44566554   2  1236899999999999999999998754     48999999999999999997  46667788999


Q ss_pred             EEecCCC
Q psy3926         482 LNYLNPD  488 (512)
Q Consensus       482 V~wa~~~  488 (512)
                      |.+....
T Consensus       181 V~rp~~~  187 (612)
T TIGR01645       181 VGRPSNM  187 (612)
T ss_pred             ecccccc
Confidence            9876543

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=98.27  E-value=1.8e-06  Score=89.15  Aligned_cols=65  Identities=20%  Similarity=0.384  Sum_probs=57.3

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~  489 (512)
                      ..+||++|+++|+.||+|.+|.|+.+     .+|||||+|.+.++|.+||.  ++..+.+.+|.|.|+.+..
T Consensus        13 ~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~   84 (352)
T TIGR01661        13 QTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSS   84 (352)
T ss_pred             CCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccc
Confidence            46999999999999999999998764     36999999999999999996  4677788999999997654

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>KOG0144|consensus

Probab=98.24  E-value=1.6e-06  Score=91.30  Aligned_cols=68  Identities=21%  Similarity=0.363  Sum_probs=59.5

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-----hcCCCCCceEEEecCCCcccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-----ELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-----~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      ..++|.+|+++|.+||.|.+|.|++||     +|||||.|.+.++|.+|+..     .....-.|++|+||.++.+|.
T Consensus        44 rt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~  121 (510)
T KOG0144|consen   44 RTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERI  121 (510)
T ss_pred             ccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhcc
Confidence            479999999999999999999999876     89999999999999999863     233344799999999998885

>PLN03120 nucleic acid binding protein; Provisional

Probab=98.22  E-value=3.3e-06  Score=85.04  Aligned_cols=63  Identities=17%  Similarity=0.209  Sum_probs=56.7

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC--CceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEecCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK--RGSALLEFEHADSARRAKL-YELGLPNCPLTLNYLNP  487 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k--kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa~~  487 (512)
                      ...||++|+++|+.||.|++|.|+.++  +|+|||+|.+.++|..|+. ++..+.+.+|.|+++..
T Consensus        14 ~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~   79 (260)
T PLN03120         14 LKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED   79 (260)
T ss_pred             CCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence            368999999999999999999998764  7999999999999999997 46778889999999973

>PF00076 RRM_1: RNA recognition motif

Probab=98.21  E-value=1.9e-06  Score=67.45  Aligned_cols=47  Identities=32%  Similarity=0.497  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHHh
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKLY  471 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~~  471 (512)
                      .++|+++|+++|+.||.|..+.|..+    .+|+|+|+|.+.++|..|+..
T Consensus         8 ~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~   58 (70)
T PF00076_consen    8 PDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEE   58 (70)
T ss_dssp             TTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHH
Confidence            47999999999999999999988864    489999999999999999973

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=98.21  E-value=2.9e-06  Score=89.13  Aligned_cols=64  Identities=25%  Similarity=0.330  Sum_probs=56.4

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~  489 (512)
                      .+|+++|+++|+.||+|.+|.|+.+     .+|+|||+|.+.++|..||.  ++..+.+.+|+|.|+.+..
T Consensus       118 ~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~  188 (346)
T TIGR01659       118 DMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGG  188 (346)
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccc
Confidence            5999999999999999999998764     36999999999999999996  4677788999999997643

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=98.09  E-value=9.6e-06  Score=85.24  Aligned_cols=66  Identities=29%  Similarity=0.372  Sum_probs=54.8

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hcCC--CCCceEEEecCCCcc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY--ELGL--PNCPLTLNYLNPDVE  490 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~~~--~~~pL~V~wa~~~~~  490 (512)
                      ..+|+++|+++|++||.|..|.|..++     +|+|||+|++.++|.+||..  ++.+  ...+|+|.|+.....
T Consensus       203 ~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~  277 (346)
T TIGR01659       203 RTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK  277 (346)
T ss_pred             CcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence            469999999999999999999888654     69999999999999999974  3332  336999999986433

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>smart00360 RRM RNA recognition motif

Probab=98.09  E-value=1.1e-05  Score=61.62  Aligned_cols=58  Identities=34%  Similarity=0.499  Sum_probs=47.9

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hcCCCCCceEE
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY--ELGLPNCPLTL  482 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V  482 (512)
                      ..+++++|+.+|..||.|..|.|..++     +|+|+|+|.+.++|..|+..  +..+.+..|.|
T Consensus         6 ~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v   70 (71)
T smart00360        6 PDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV   70 (71)
T ss_pred             cccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence            358999999999999999999988754     58999999999999999963  34445566655

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=98.06  E-value=1.1e-05  Score=90.24  Aligned_cols=68  Identities=13%  Similarity=0.204  Sum_probs=59.7

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      ..+++++|+++|+.||.|.+|.|..+     .+|||||+|.+.++|..||.  ++..+.+..|.|.|+.++|...
T Consensus       214 ~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~~  288 (612)
T TIGR01645       214 PDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDAL  288 (612)
T ss_pred             CCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCcccc
Confidence            36899999999999999999998753     48999999999999999997  4677788999999999876654

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=98.04  E-value=8.8e-06  Score=75.29  Aligned_cols=63  Identities=19%  Similarity=0.220  Sum_probs=52.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|.++.|.     .+.+|.|+|+|++.++|+.|+..  ..-+...+|+|.|-.+.
T Consensus        45 ~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~  114 (144)
T PLN03134         45 GTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR  114 (144)
T ss_pred             CCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcC
Confidence            58999999999999999999764     25689999999999999999963  23345678999998654

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=98.02  E-value=1.2e-05  Score=87.86  Aligned_cols=63  Identities=21%  Similarity=0.410  Sum_probs=55.2

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh----hcCCCCCceEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY----ELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~----~~~~~~~pL~V~wa~~~  488 (512)
                      ..+|+++|+++|+.||.|.+|.|..+ +|+|||+|.+.++|.+||+.    ...+.+.+|.|.|+..+
T Consensus        12 ~~~te~~L~~~f~~fG~V~~v~i~~~-k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~   78 (481)
T TIGR01649        12 QDVVEADLVEALIPFGPVSYVMMLPG-KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ   78 (481)
T ss_pred             CCCCHHHHHHHHHhcCCeeEEEEECC-CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence            46999999999999999999988764 69999999999999999973    35567789999999754

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>KOG0114|consensus

Probab=98.01  E-value=1.9e-05  Score=69.30  Aligned_cols=64  Identities=30%  Similarity=0.428  Sum_probs=55.3

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC--CceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK--RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k--kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~  488 (512)
                      -.+|.+...+||.+||.|..|.|...+  +|+|||+|+++.+|.+|+.+  +....+..|.|-|..+.
T Consensus        28 ~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~   95 (124)
T KOG0114|consen   28 FKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE   95 (124)
T ss_pred             ccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence            469999999999999999999998654  89999999999999999986  55566678999887653

>smart00362 RRM_2 RNA recognition motif

Probab=98.00  E-value=1.6e-05  Score=60.90  Aligned_cols=58  Identities=33%  Similarity=0.477  Sum_probs=47.7

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC---CceEEEEEcCHHHHHHHHHh--hcCCCCCceEE
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK---RGSALLEFEHADSARRAKLY--ELGLPNCPLTL  482 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k---kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V  482 (512)
                      ..+++++|+++|..||.|..+.+..+.   +|+|+|+|.+.++|..|+..  +..+.+.++.|
T Consensus         9 ~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v   71 (72)
T smart00362        9 PDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV   71 (72)
T ss_pred             CcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence            368999999999999999999888664   79999999999999999963  34444555555

>KOG0148|consensus

Probab=97.99  E-value=9.5e-06  Score=81.44  Aligned_cols=61  Identities=18%  Similarity=0.284  Sum_probs=55.2

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCC
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNP  487 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~  487 (512)
                      ..||+.|+..|+.||+|.+|.|-++ +|+|||.|.+.++|..||-  ++....+.++++.|-+.
T Consensus       175 ~lte~~mr~~Fs~fG~I~EVRvFk~-qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe  237 (321)
T KOG0148|consen  175 GLTEDLMRQTFSPFGPIQEVRVFKD-QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE  237 (321)
T ss_pred             cccHHHHHHhcccCCcceEEEEecc-cceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence            5899999999999999999999876 7999999999999999996  46778889999999764

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=97.94  E-value=1.7e-05  Score=87.81  Aligned_cols=64  Identities=19%  Similarity=0.271  Sum_probs=55.4

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~  488 (512)
                      ..+||++|+++|+.||.|.+|.|+.++     +|+|||+|.+.++|.+|+..  ...+.+.+|.|.|+...
T Consensus        10 ~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~   80 (562)
T TIGR01628        10 PDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD   80 (562)
T ss_pred             CCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence            479999999999999999999998653     69999999999999999963  34467899999998643

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=97.93  E-value=2.7e-05  Score=86.79  Aligned_cols=63  Identities=24%  Similarity=0.315  Sum_probs=55.3

Q ss_pred             CCCCHHHHHHHhhcc--CCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcc
Q psy3926         425 DVYTRESLTKIFSKY--GKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE  490 (512)
Q Consensus       425 ~~~te~~L~~iFs~f--G~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~  490 (512)
                      ..+|++.|+++|+.|  |.|+.|.+.   +++|||+|++.++|.+|+.  ++..+.+..|.|.|+.++..
T Consensus       243 ~~~tee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~  309 (578)
T TIGR01648       243 TTTTEEIIEKSFSEFKPGKVERVKKI---RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK  309 (578)
T ss_pred             CCCCHHHHHHHHHhcCCCceEEEEee---cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence            368999999999999  999999775   5699999999999999996  46777889999999987544

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>KOG0146|consensus

Probab=97.93  E-value=1.2e-05  Score=80.51  Aligned_cols=69  Identities=19%  Similarity=0.372  Sum_probs=59.2

Q ss_pred             CCHHHHHHHhhccCCeeEEEEcc----CCCceEEEEEcCHHHHHHHHHh-----hcCCCCCceEEEecCCCccccccc
Q psy3926         427 YTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLY-----ELGLPNCPLTLNYLNPDVEREESR  495 (512)
Q Consensus       427 ~te~~L~~iFs~fG~I~~V~i~~----~kkg~A~V~F~s~~~A~~Ai~~-----~~~~~~~pL~V~wa~~~~~r~~~~  495 (512)
                      -+||+++.+|..||.|+++.++.    ..||||||.|.+..+|..||..     .....+.-|.|+|+..+.+|.-+|
T Consensus        31 q~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdkER~lRR  108 (371)
T KOG0146|consen   31 QSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTLRR  108 (371)
T ss_pred             ccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEeccchHHHHHHH
Confidence            57999999999999999999885    4599999999999999999973     233445789999999999998654

>KOG4206|consensus

Probab=97.92  E-value=1.9e-05  Score=77.51  Aligned_cols=63  Identities=25%  Similarity=0.444  Sum_probs=55.2

Q ss_pred             CCCHHHHHH----HhhccCCeeEEEEcc--CCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCC
Q psy3926         426 VYTRESLTK----IFSKYGKINILVISP--KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       426 ~~te~~L~~----iFs~fG~I~~V~i~~--~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~  488 (512)
                      .+..+.|+.    +|++||.|.+|++++  +.+|.|+|+|.+.++|-.|+..  +..+.+.|++|.||..+
T Consensus        20 kI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~   90 (221)
T KOG4206|consen   20 KIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSD   90 (221)
T ss_pred             cccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCc
Confidence            466677776    999999999999996  5689999999999999999974  78888999999999765

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=97.92  E-value=4.3e-05  Score=58.88  Aligned_cols=60  Identities=33%  Similarity=0.515  Sum_probs=50.5

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEe
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNY  484 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~w  484 (512)
                      ...+++.|+++|..||.|..+.+..+.    +|+|+|+|.+.++|..|+..  +..+.+..++|.|
T Consensus         9 ~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~   74 (74)
T cd00590           9 PDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF   74 (74)
T ss_pred             CccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence            358899999999999999999988754    79999999999999999974  3435667777765

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>PLN03121 nucleic acid binding protein; Provisional

Probab=97.91  E-value=2.9e-05  Score=77.40  Aligned_cols=62  Identities=18%  Similarity=0.180  Sum_probs=55.1

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC--CceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEecC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK--RGSALLEFEHADSARRAKL-YELGLPNCPLTLNYLN  486 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k--kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa~  486 (512)
                      ...||++|+++|+.||+|.+|.|..+.  +|+|||+|.+.++|..|+. ++..+.+.+|.|+-..
T Consensus        15 ~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~   79 (243)
T PLN03121         15 PKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG   79 (243)
T ss_pred             CCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence            368999999999999999999998754  6899999999999999997 5788889999998655

>KOG1789|consensus

Probab=97.90  E-value=1.1e-05  Score=92.20  Aligned_cols=54  Identities=35%  Similarity=0.423  Sum_probs=46.8

Q ss_pred             CCCCcccccCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHcc
Q psy3926         250 KDLDLYGLLELTID----CSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLL  306 (512)
Q Consensus       250 ~~~d~YeiLgv~~~----As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLs  306 (512)
                      ..-+-|+||.|+.+    -..+.||++|++||.+|||||||   +..++|..+++||+.|.
T Consensus      1279 S~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP---EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1279 SVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP---EGREMFERVNKAYELLS 1336 (2235)
T ss_pred             chHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHHHHHHHH
Confidence            34578999999864    34578999999999999999996   57899999999999998

>KOG0117|consensus

Probab=97.89  E-value=2.6e-05  Score=82.76  Aligned_cols=80  Identities=18%  Similarity=0.336  Sum_probs=68.9

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecC
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN  486 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~  486 (512)
                      .+.+|||=+-++.-  ..+||+.|.++|+.||.|+.|+.++|   +|||.|.+.++|.+|++.  +..+.+.+|.|+.|.
T Consensus       255 ~ms~VKvLYVRNL~--~~tTeE~lk~~F~~~G~veRVkk~rD---YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK  329 (506)
T KOG0117|consen  255 TMSKVKVLYVRNLM--ESTTEETLKKLFNEFGKVERVKKPRD---YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK  329 (506)
T ss_pred             hhhheeeeeeeccc--hhhhHHHHHHHHHhccceEEeecccc---eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence            56678888877642  47999999999999999999998866   999999999999999984  677888999999999


Q ss_pred             CCccccc
Q psy3926         487 PDVEREE  493 (512)
Q Consensus       487 ~~~~r~~  493 (512)
                      ++.+...
T Consensus       330 P~~k~k~  336 (506)
T KOG0117|consen  330 PVDKKKK  336 (506)
T ss_pred             Chhhhcc
Confidence            8766654

>PF00076 RRM_1: RNA recognition motif

Probab=97.89  E-value=2.1e-05  Score=61.47  Aligned_cols=49  Identities=35%  Similarity=0.503  Sum_probs=43.0

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHhhhC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLYELG   86 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g   86 (512)
                      ++|++.|+++|++||.|..+.|..    +.+|.|+|+|.+.++|+.|+..=-|
T Consensus         9 ~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g   61 (70)
T PF00076_consen    9 DVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNG   61 (70)
T ss_dssp             TSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCC
Confidence            699999999999999999997654    5789999999999999999975433

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=97.88  E-value=3.2e-05  Score=83.00  Aligned_cols=65  Identities=22%  Similarity=0.412  Sum_probs=56.6

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~  489 (512)
                      ..+|+++|+++|+.||.|..|.|..+     .+|+|||+|.+.++|..|+.  ++..+.+.+|.|.|+....
T Consensus       196 ~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~  267 (457)
T TIGR01622       196 FNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDST  267 (457)
T ss_pred             CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCC
Confidence            47999999999999999999998853     37999999999999999996  4666778999999987543

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>PF14259 RRM_6: RNA recognition motif (a

Probab=97.87  E-value=3e-05  Score=61.52  Aligned_cols=46  Identities=33%  Similarity=0.541  Sum_probs=40.9

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHHh
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKLY  471 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~~  471 (512)
                      .+|+++|+++|+.||.|..|.+..++    +|+|||+|.+.++|.+|+..
T Consensus         9 ~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~   58 (70)
T PF14259_consen    9 STTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALEL   58 (70)
T ss_dssp             T--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHH
Confidence            58999999999999999999998865    79999999999999999975

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=97.84  E-value=4.4e-05  Score=81.95  Aligned_cols=67  Identities=22%  Similarity=0.254  Sum_probs=57.0

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~~~~r  491 (512)
                      ..+|+++|+++|+.||.|.+|.|+.+     .+|+|||+|.+.++|.+||.. +..+.+.+|.|.+...+..+
T Consensus        99 ~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~~~  171 (457)
T TIGR01622        99 LKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAEKNR  171 (457)
T ss_pred             CCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchhhhh
Confidence            36999999999999999999999864     379999999999999999973 56677889999987654433

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>KOG0113|consensus

Probab=97.83  E-value=9.1e-05  Score=75.37  Aligned_cols=62  Identities=19%  Similarity=0.327  Sum_probs=52.3

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCC
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNP  487 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~  487 (512)
                      +.+|+.|+..|+.||+|+.|.|..+     .+|||||+|++..+...|-++  +..+.+..|.|.+-++
T Consensus       112 dT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERg  180 (335)
T KOG0113|consen  112 DTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERG  180 (335)
T ss_pred             cccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccc
Confidence            4789999999999999999998864     489999999999999999874  5666667788876544

>smart00361 RRM_1 RNA recognition motif

Probab=97.78  E-value=4.5e-05  Score=61.55  Aligned_cols=54  Identities=22%  Similarity=0.357  Sum_probs=41.4

Q ss_pred             HHHHHHHhh----ccCCeeEEE--Ec-c-----CCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEE
Q psy3926         429 RESLTKIFS----KYGKINILV--IS-P-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTL  482 (512)
Q Consensus       429 e~~L~~iFs----~fG~I~~V~--i~-~-----~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V  482 (512)
                      +++|+++|+    .||.|.+|.  +. .     ..+|+|||.|.+.++|.+|+..  +..+.+.+|++
T Consensus         2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~   69 (70)
T smart00361        2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA   69 (70)
T ss_pred             chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence            577888888    999999984  32 2     2489999999999999999974  44444555554

>KOG0107|consensus

Probab=97.78  E-value=4.9e-05  Score=72.23  Aligned_cols=66  Identities=23%  Similarity=0.345  Sum_probs=58.6

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCCcc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE  490 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~~~  490 (512)
                      ...++.+|..+|+.||+|-+|.|.....|+|||+|++.-+|..|+..  +..+-+.-++|+...+.+.
T Consensus        20 ~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r   87 (195)
T KOG0107|consen   20 SRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR   87 (195)
T ss_pred             CCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence            46899999999999999999999998899999999999999999974  5556678899999887666

>smart00360 RRM RNA recognition motif

Probab=97.77  E-value=7.5e-05  Score=56.86  Aligned_cols=46  Identities=37%  Similarity=0.551  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCC-----CceEEEEeccHHHHHHHHHh
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY   83 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~-----~g~A~vef~~~~aa~~a~~~   83 (512)
                      +++++.|+.+|+.||.|..+.|...+     +|.|+|+|.+.++|..|+..
T Consensus         7 ~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~   57 (71)
T smart00360        7 DVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEA   57 (71)
T ss_pred             ccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHH
Confidence            58999999999999999999876543     69999999999999999853

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=97.72  E-value=6.7e-05  Score=81.58  Aligned_cols=63  Identities=10%  Similarity=0.172  Sum_probs=55.5

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNP  487 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~  487 (512)
                      ..+|++.|+++|+.||.|..|.|+.+     .+|+|||+|.+.++|..||.  ++..+.+..|.|.|+..
T Consensus       305 ~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~  374 (509)
T TIGR01642       305 LYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV  374 (509)
T ss_pred             CCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence            46999999999999999999988754     48999999999999999997  46777788999999864

Members of this subfamily are found in plants, metazoa and fungi.

>KOG0132|consensus

Probab=97.72  E-value=6.7e-05  Score=84.07  Aligned_cols=67  Identities=16%  Similarity=0.394  Sum_probs=60.5

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCCcccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      .+++|.+|..+|..||.|++|.++.. +|||||++....+|++|++.  +++..+..++|.|+.++..+.
T Consensus       431 k~v~e~dL~~~feefGeiqSi~li~~-R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks  499 (894)
T KOG0132|consen  431 KNVTEQDLANLFEEFGEIQSIILIPP-RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS  499 (894)
T ss_pred             chhhHHHHHHHHHhcccceeEeeccC-CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence            36999999999999999999988764 89999999999999999974  788888999999999887765

>KOG4207|consensus

Probab=97.71  E-value=5.5e-05  Score=73.54  Aligned_cols=74  Identities=20%  Similarity=0.281  Sum_probs=59.7

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hcCCCCCce
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY--ELGLPNCPL  480 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL  480 (512)
                      ..+.+|||.=-.-     -.|.++|+.+|.+||.|-+|.|+.++     +|+|||-|....+|+.|+..  +..+.+.-|
T Consensus        11 ~gm~SLkVdNLTy-----RTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRel   85 (256)
T KOG4207|consen   11 EGMTSLKVDNLTY-----RTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGREL   85 (256)
T ss_pred             ccceeEEecceec-----cCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecccee
Confidence            3556677643222     36789999999999999999999764     79999999999999999974  566677889


Q ss_pred             EEEecC
Q psy3926         481 TLNYLN  486 (512)
Q Consensus       481 ~V~wa~  486 (512)
                      .|+.|+
T Consensus        86 rVq~ar   91 (256)
T KOG4207|consen   86 RVQMAR   91 (256)
T ss_pred             eehhhh
Confidence            998886

>KOG0149|consensus

Probab=97.70  E-value=4.8e-05  Score=75.11  Aligned_cols=50  Identities=26%  Similarity=0.412  Sum_probs=42.0

Q ss_pred             CCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHhhcCCC
Q psy3926         427 YTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLYELGLP  476 (512)
Q Consensus       427 ~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~~~~~~  476 (512)
                      ...+.|+++|.+||+|++.+|+.|+     ||++||+|.+.++|.+|.++-+...
T Consensus        24 T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piI   78 (247)
T KOG0149|consen   24 THKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPII   78 (247)
T ss_pred             cchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcc
Confidence            4578999999999999887777654     8999999999999999998644433

>KOG0145|consensus

Probab=97.67  E-value=6.7e-05  Score=75.09  Aligned_cols=74  Identities=20%  Similarity=0.367  Sum_probs=62.7

Q ss_pred             eEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEec
Q psy3926         413 LRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYL  485 (512)
Q Consensus       413 lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa  485 (512)
                      |.|.+-..     ++|+|+|+.+|+.-|.|+++.+..||     -||+||-|-+.++|++||.  ++..+-...|+|+||
T Consensus        44 LIvNYLPQ-----~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA  118 (360)
T KOG0145|consen   44 LIVNYLPQ-----NMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA  118 (360)
T ss_pred             eeeeeccc-----ccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence            55555432     69999999999999999999998876     6999999999999999997  467777889999999


Q ss_pred             CCCccc
Q psy3926         486 NPDVER  491 (512)
Q Consensus       486 ~~~~~r  491 (512)
                      +|-...
T Consensus       119 RPSs~~  124 (360)
T KOG0145|consen  119 RPSSDS  124 (360)
T ss_pred             cCChhh
Confidence            876443

>smart00362 RRM_2 RNA recognition motif

Probab=97.67  E-value=0.00012  Score=56.05  Aligned_cols=45  Identities=36%  Similarity=0.557  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCC---CceEEEEeccHHHHHHHHH
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKK---RGSALLEFEHADSARRAKL   82 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~---~g~A~vef~~~~aa~~a~~   82 (512)
                      +.+.+.|+++|++||.|..+.+...+   +|.|+|+|.+..+|..|+.
T Consensus        10 ~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~   57 (72)
T smart00362       10 DVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIE   57 (72)
T ss_pred             cCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHH
Confidence            58999999999999999999876554   7999999999999999985

>KOG0121|consensus

Probab=97.66  E-value=8.5e-05  Score=67.49  Aligned_cols=61  Identities=25%  Similarity=0.431  Sum_probs=55.2

Q ss_pred             CCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCC
Q psy3926         427 YTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNP  487 (512)
Q Consensus       427 ~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~  487 (512)
                      .+|+.|-++|++-|+|..|+|.-++     =|+|||+|-+.++|..|+++  ++.+.+.||.|.|--+
T Consensus        48 ttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~G  115 (153)
T KOG0121|consen   48 TTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAG  115 (153)
T ss_pred             ecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecccc
Confidence            6799999999999999999998765     39999999999999999985  7888999999999765

>KOG0568|consensus

Probab=97.65  E-value=5.2e-05  Score=74.70  Aligned_cols=55  Identities=20%  Similarity=0.459  Sum_probs=48.6

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHH-HccC
Q psy3926         252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIE-VLLD  307 (512)
Q Consensus       252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYe-vLsD  307 (512)
                      +.||.||||..+|+.++++.||..|++++|||.... ....+.|.+|.+||. +|+.
T Consensus        47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~-~adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE-EADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc-cccHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999999999999998753 445689999999998 6653

>PLN03213 repressor of silencing 3; Provisional

Probab=97.65  E-value=8.4e-05  Score=79.73  Aligned_cols=64  Identities=20%  Similarity=0.245  Sum_probs=56.2

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-CCceEEEEEcCH--HHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-KRGSALLEFEHA--DSARRAKL--YELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-kkg~A~V~F~s~--~~A~~Ai~--~~~~~~~~pL~V~wa~~~  488 (512)
                      -.+|+++|+.+|+.||.|.+|.|+.. -+|+|||+|.+.  .++.+||.  +++.+.+..|+|.-|++-
T Consensus        20 ydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~   88 (759)
T PLN03213         20 ESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH   88 (759)
T ss_pred             CCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence            46899999999999999999998853 389999999987  78899997  589999999999988653

>PF15023 DUF4523: Protein of unknown function (DUF4523)

Probab=97.64  E-value=0.00014  Score=67.11  Aligned_cols=78  Identities=19%  Similarity=0.277  Sum_probs=60.5

Q ss_pred             CCCCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEe
Q psy3926         406 LNPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNY  484 (512)
Q Consensus       406 ~~~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~w  484 (512)
                      .++.+.||.|+|-++. -....|-..+..-++.||+|++|.+|+  +-+|+|+|.+..+|=+||.+ ....++..+++.|
T Consensus        82 kepPMsTIVVRWlkkn-m~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s~~pgtm~qCsW  158 (166)
T PF15023_consen   82 KEPPMSTIVVRWLKKN-MQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQSRAPGTMFQCSW  158 (166)
T ss_pred             CCCCceeEEeehhhhc-CChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcCCCCCceEEeec
Confidence            3567889999997663 222333344555579999999999997  46999999999999999975 4566788899999


Q ss_pred             cC
Q psy3926         485 LN  486 (512)
Q Consensus       485 a~  486 (512)
                      -.
T Consensus       159 qq  160 (166)
T PF15023_consen  159 QQ  160 (166)
T ss_pred             cc
Confidence            64

>KOG0145|consensus

Probab=97.62  E-value=0.0001  Score=73.85  Aligned_cols=102  Identities=22%  Similarity=0.331  Sum_probs=70.3

Q ss_pred             cceeEEEeecCCCC------------CCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHhh
Q psy3926         410 NYRLRIRWKSSSTD------------TDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLYE  472 (512)
Q Consensus       410 ~~~lkVKWk~~~~~------------~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~~  472 (512)
                      +.+|||.+.+-..+            +..+|..+|..||+.||.|..-.|+-+     .+|-+||.|.-..+|+.||..-
T Consensus       110 ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~l  189 (360)
T KOG0145|consen  110 NKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGL  189 (360)
T ss_pred             cceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhc
Confidence            34777777665422            146899999999999999977666644     4899999999999999999853


Q ss_pred             cCC----CCCceEEEecCCCcccccccCCCCCCcccCCCCCCC
Q psy3926         473 LGL----PNCPLTLNYLNPDVEREESRKQPKNPVFSNIDFSGP  511 (512)
Q Consensus       473 ~~~----~~~pL~V~wa~~~~~r~~~~~~s~~~~~~~~d~~~~  511 (512)
                      .|.    ...||+|+|+..|.-...-.-+++.-.-|.+-|.||
T Consensus       190 NG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp  232 (360)
T KOG0145|consen  190 NGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGP  232 (360)
T ss_pred             cCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCc
Confidence            332    237999999987733322122233333445666665

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=97.61  E-value=0.00014  Score=69.25  Aligned_cols=63  Identities=30%  Similarity=0.454  Sum_probs=55.8

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNP  487 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~  487 (512)
                      ..+|++.|+++|..||.|..|.|..++     +|+|||+|.+.++|..|+..  +..+.+.+|.|.++..
T Consensus       125 ~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~  194 (306)
T COG0724         125 YDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP  194 (306)
T ss_pred             CCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence            469999999999999999999887653     79999999999999999974  5778889999999754

>PF14259 RRM_6: RNA recognition motif (a

Probab=97.57  E-value=0.00013  Score=57.89  Aligned_cols=47  Identities=32%  Similarity=0.510  Sum_probs=40.4

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCC----CceEEEEeccHHHHHHHHHhh
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKLYE   84 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~----~g~A~vef~~~~aa~~a~~~e   84 (512)
                      +.+++.|+.+|+.||.|..|.+...+    +|.|+|+|.+.+.|..|+..-
T Consensus         9 ~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~   59 (70)
T PF14259_consen    9 STTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELL   59 (70)
T ss_dssp             T--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHC
Confidence            57899999999999999999886654    799999999999999999763

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=97.53  E-value=0.00034  Score=53.72  Aligned_cols=59  Identities=34%  Similarity=0.519  Sum_probs=47.1

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCC----CceEEEEeccHHHHHHHHHhhhCC--CCCCcEEee
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKLYELGL--PNCPLTLNY   96 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~----~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~   96 (512)
                      +.+++.|+.+|+.||+|..+.+....    +|.|+|+|.+.++|..|+..--|.  .+.+++|.|
T Consensus        10 ~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~   74 (74)
T cd00590          10 DVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF   74 (74)
T ss_pred             ccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence            57899999999999999999876544    799999999999999999754443  233455543

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>KOG0125|consensus

Probab=97.44  E-value=0.00019  Score=73.83  Aligned_cols=71  Identities=18%  Similarity=0.296  Sum_probs=59.7

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccC---CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcccccccC
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPK---KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVEREESRK  496 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~---kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~~~~~  496 (512)
                      -|-|-+|+.+|.+||+|.+|.|+-+   .||++||+|++.++|++|-.  +++...++.|.|.-|-.+....+..+
T Consensus       107 rFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV~n~K~~v  182 (376)
T KOG0125|consen  107 RFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARVHNKKKKV  182 (376)
T ss_pred             cccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhhccCCccc
Confidence            4778999999999999999998853   48999999999999999975  57778889999999877765554333

>KOG0111|consensus

Probab=97.44  E-value=9e-05  Score=72.64  Aligned_cols=64  Identities=31%  Similarity=0.411  Sum_probs=57.5

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEcc-----CCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~-----~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~  488 (512)
                      +.+||..|..-|-.||.|.+|.|+-     +.+|+|||+|.-.++|.+||.+  +..+.+..|+|.+|.|+
T Consensus        20 deVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~   90 (298)
T KOG0111|consen   20 DEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPE   90 (298)
T ss_pred             HHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCc
Confidence            4689999999999999999999985     4699999999999999999974  78888999999999875

>PLN03120 nucleic acid binding protein; Provisional

Probab=97.42  E-value=0.00029  Score=71.17  Aligned_cols=61  Identities=18%  Similarity=0.262  Sum_probs=49.5

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc--CCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeecC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP--KKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLN   98 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~--k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l~   98 (512)
                      .-|++.|+++|+.||.|.+|.|..  ..+|.|.|+|.+.++|+.|+.. -.-+.+.+|+|+|-.
T Consensus        15 ~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~   78 (260)
T PLN03120         15 KATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAE   78 (260)
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEecc
Confidence            468999999999999999998743  3579999999999999999953 233456678888754

>KOG0127|consensus

Probab=97.41  E-value=0.00022  Score=77.52  Aligned_cols=61  Identities=25%  Similarity=0.423  Sum_probs=54.3

Q ss_pred             HHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926         429 RESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       429 e~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~  489 (512)
                      +++|..+|+.||.|..|+|+.+.    .|+|||.|....+|..|+.  ++..+.+.|+-|.||.++.
T Consensus       131 ~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd  197 (678)
T KOG0127|consen  131 KPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD  197 (678)
T ss_pred             cHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence            45999999999999999999643    6999999999999999998  4777889999999998763

>KOG0105|consensus

Probab=97.40  E-value=0.00022  Score=68.40  Aligned_cols=66  Identities=20%  Similarity=0.334  Sum_probs=56.1

Q ss_pred             CCCCCCHHHHHHHhhccCCeeEEEEccCC--CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926         423 DTDVYTRESLTKIFSKYGKINILVISPKK--RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       423 ~~~~~te~~L~~iFs~fG~I~~V~i~~~k--kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~  488 (512)
                      .++++-|.+|.+||.+||.|..|.+....  ..+|||+|++.-+|+.||.  ++..+....|.|+++++-
T Consensus        14 LP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg   83 (241)
T KOG0105|consen   14 LPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG   83 (241)
T ss_pred             CCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence            34679999999999999999998874322  5799999999999999996  578888899999999754

>KOG0153|consensus

Probab=97.38  E-value=0.00042  Score=71.88  Aligned_cols=61  Identities=23%  Similarity=0.452  Sum_probs=52.7

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh---hcCCCCCceEEEecCC
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY---ELGLPNCPLTLNYLNP  487 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~---~~~~~~~pL~V~wa~~  487 (512)
                      .++|.+|++.|-+||.|.+|++.. ++|||||.|.+..+|+.|...   .+-..+..|.|.|.++
T Consensus       239 ~v~e~dIrdhFyqyGeirsi~~~~-~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~  302 (377)
T KOG0153|consen  239 EVLEQDIRDHFYQYGEIRSIRILP-RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP  302 (377)
T ss_pred             chhHHHHHHHHhhcCCeeeEEeec-ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence            599999999999999999998865 467999999999999999864   3444556799999988

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=97.32  E-value=0.00038  Score=75.74  Aligned_cols=57  Identities=25%  Similarity=0.363  Sum_probs=49.5

Q ss_pred             HHHHHHhhccCCeeEEEEccCC--------CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926         430 ESLTKIFSKYGKINILVISPKK--------RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN  486 (512)
Q Consensus       430 ~~L~~iFs~fG~I~~V~i~~~k--------kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~  486 (512)
                      +.|+++|++||.|++|.|....        .|+|||+|++.++|.+||.  ++..+.+.+|.|.|..
T Consensus       434 edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~  500 (509)
T TIGR01642       434 EDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYG  500 (509)
T ss_pred             HHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeC
Confidence            6789999999999999997531        5899999999999999997  4667788999999874

Members of this subfamily are found in plants, metazoa and fungi.

>KOG0415|consensus

Probab=97.20  E-value=0.0013  Score=68.44  Aligned_cols=61  Identities=26%  Similarity=0.407  Sum_probs=49.8

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN  486 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~  486 (512)
                      ..|.++|.-|||.||+|.++.|+.++     --+|||+|++.++|++|.-  .++-..+..|.|.|..
T Consensus       250 VTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ  317 (479)
T KOG0415|consen  250 VTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ  317 (479)
T ss_pred             cccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence            46789999999999999999988765     3789999999999999963  2444556778887764

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=97.19  E-value=0.00066  Score=75.86  Aligned_cols=61  Identities=23%  Similarity=0.286  Sum_probs=48.7

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHHh--hcCC-CCCceEEEec
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKLY--ELGL-PNCPLTLNYL  485 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~~--~~~~-~~~pL~V~wa  485 (512)
                      ..+||++|+++|++||.|.+|.|..+    .+|+|||+|.+.++|.+||..  +..+ .+..|.|.++
T Consensus        68 ~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S  135 (578)
T TIGR01648        68 RDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS  135 (578)
T ss_pred             CCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence            36999999999999999999988753    489999999999999999974  3333 2345666554

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>PLN03121 nucleic acid binding protein; Provisional

Probab=97.17  E-value=0.00082  Score=67.18  Aligned_cols=61  Identities=18%  Similarity=0.194  Sum_probs=48.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec--cCCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeecC
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS--PKKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLN   98 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~--~k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l~   98 (512)
                      .-|++.|+++|+.||+|.+|.|.  ...+|.|.|+|.+.++|+.|+.. -.=+.+.|+.|+-.+
T Consensus        16 ~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~   79 (243)
T PLN03121         16 KATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG   79 (243)
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence            36899999999999999999764  35568999999999999999953 223455677777554

>KOG0148|consensus

Probab=97.14  E-value=0.00058  Score=68.88  Aligned_cols=67  Identities=15%  Similarity=0.230  Sum_probs=56.1

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCCcccc
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      .++-+.|++-|.+||.|.+..|++|     .|||+||.|-+.++|++||..  +.=+..+.|+..||--+|.+.
T Consensus        73 eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~  146 (321)
T KOG0148|consen   73 EIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEM  146 (321)
T ss_pred             hcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCcccc
Confidence            5788999999999999999988864     599999999999999999985  333455789999997666443

>smart00361 RRM_1 RNA recognition motif

Probab=97.05  E-value=0.0012  Score=53.21  Aligned_cols=47  Identities=30%  Similarity=0.505  Sum_probs=39.6

Q ss_pred             HHHHHHHHh----hcCcccEE---Eec-----cCCCceEEEEeccHHHHHHHHHhhhCC
Q psy3926          41 RESLTKIFS----KYGKINIL---VIS-----PKKRGSALLEFEHADSARRAKLYELGL   87 (512)
Q Consensus        41 ~~~l~~~f~----kyG~v~~~---v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g~   87 (512)
                      ++.|+.+|+    +||.|..|   ++.     .+.+|.|.|+|.+.++|..|+..-.|.
T Consensus         2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~   60 (70)
T smart00361        2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGR   60 (70)
T ss_pred             chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence            578899999    99999988   343     346899999999999999999876665

>KOG0108|consensus

Probab=96.99  E-value=0.0015  Score=70.62  Aligned_cols=68  Identities=24%  Similarity=0.284  Sum_probs=60.2

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCCcccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      ..++|+.|.+||+..|.|.++.+..|+     +|+||++|.+.+.|..|+..  +..+.+.+|+|.|+.....+.
T Consensus        28 ~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~~~  102 (435)
T KOG0108|consen   28 YEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKNAE  102 (435)
T ss_pred             CcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccchhH
Confidence            468999999999999999999988654     89999999999999999984  678888999999998766554

>KOG3192|consensus

Probab=96.91  E-value=0.006  Score=57.20  Aligned_cols=70  Identities=24%  Similarity=0.359  Sum_probs=55.9

Q ss_pred             CCCcccccCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC----C-hHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         251 DLDLYGLLELTI--DCSEQDIRSAYRKKALKCHPDKNPD----D-KKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       251 ~~d~YeiLgv~~--~As~~eIKkAYRkLa~k~HPDk~~~----~-~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ..+||.++|...  ...+.-+..-|.-.+++.|||+...    + .-|.+.-..|++||.+|.||-+|+.|-..+.+
T Consensus         7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g   83 (168)
T KOG3192|consen    7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKG   83 (168)
T ss_pred             HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence            458999998654  3566666768999999999998421    1 24778899999999999999999999887765

>KOG0131|consensus

Probab=96.83  E-value=0.0015  Score=62.64  Aligned_cols=61  Identities=23%  Similarity=0.297  Sum_probs=55.5

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN  486 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~  486 (512)
                      -++++.|.++|-+-|+|.+|.|++++     .|+|||+|.+.++|+=||+  +.+.+.+.||+|.-+.
T Consensus        20 kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas   87 (203)
T KOG0131|consen   20 KVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS   87 (203)
T ss_pred             HHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence            47889999999999999999999864     7999999999999999997  5788889999999887

>KOG0723|consensus

Probab=96.82  E-value=0.002  Score=56.69  Aligned_cols=54  Identities=20%  Similarity=0.236  Sum_probs=45.2

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccCh
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDK  308 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp  308 (512)
                      ...--.||||.++++.+.||.|+|++-+.-|||+..+ |   -.-.+|++|+++|...
T Consensus        55 r~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS-P---YlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   55 RREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS-P---YLASKINEAKDLLEGT  108 (112)
T ss_pred             hHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC-H---HHHHHHHHHHHHHhcc
Confidence            3345679999999999999999999999999999965 4   3445799999999754

>KOG0124|consensus

Probab=96.76  E-value=0.0058  Score=63.95  Aligned_cols=58  Identities=21%  Similarity=0.321  Sum_probs=49.7

Q ss_pred             CCHHHHHHHhhccCCeeEEEEcc-----CCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEe
Q psy3926         427 YTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNY  484 (512)
Q Consensus       427 ~te~~L~~iFs~fG~I~~V~i~~-----~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~w  484 (512)
                      .-||.||.-|..||+|++|.|.=     +.||+|||+|+-.++|..|+..  +.-+.+..|+|.-
T Consensus       125 l~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr  189 (544)
T KOG0124|consen  125 LREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR  189 (544)
T ss_pred             echHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence            66899999999999999999873     5699999999999999999974  5556667788863

>KOG0107|consensus

Probab=96.69  E-value=0.0019  Score=61.65  Aligned_cols=61  Identities=28%  Similarity=0.433  Sum_probs=50.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCCCCC--CcEEeecC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNC--PLTLNYLN   98 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~~~n--Pl~~~~l~   98 (512)
                      .-++..|..+|.+||.|-.|+|-....|-|+|||++..+|+-|+.+=-|.-=+  -++|+--.
T Consensus        21 ~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~   83 (195)
T KOG0107|consen   21 RATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST   83 (195)
T ss_pred             CcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence            57899999999999999999999999999999999999999999876665422  25555433

>KOG4206|consensus

Probab=96.69  E-value=0.003  Score=62.30  Aligned_cols=60  Identities=28%  Similarity=0.507  Sum_probs=50.1

Q ss_pred             CCCHHHHHH----HHhhcCcccEEEecc--CCCceEEEEeccHHHHHHHHHhhhCCC--CCCcEEeec
Q psy3926          38 VYTRESLTK----IFSKYGKINILVISP--KKRGSALLEFEHADSARRAKLYELGLP--NCPLTLNYL   97 (512)
Q Consensus        38 ~Y~~~~l~~----~f~kyG~v~~~v~~~--k~~g~A~vef~~~~aa~~a~~~e~g~~--~nPl~~~~l   97 (512)
                      ....+.|++    ||+.||.|++|++.+  |.+|.|.|.|.+..+|-.|+..=.|.+  +.|+.|.+-
T Consensus        20 kI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA   87 (221)
T KOG4206|consen   20 KIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA   87 (221)
T ss_pred             cccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence            466788887    999999999999864  889999999999999999998877774  456666544

>KOG0123|consensus

Probab=96.62  E-value=0.0043  Score=66.00  Aligned_cols=82  Identities=23%  Similarity=0.387  Sum_probs=63.2

Q ss_pred             cceeEEEeecCC-------CCCCCCCHHHHHHHhhccCCeeEEEEccCC---CceEEEEEcCHHHHHHHHHh--hcCCCC
Q psy3926         410 NYRLRIRWKSSS-------TDTDVYTRESLTKIFSKYGKINILVISPKK---RGSALLEFEHADSARRAKLY--ELGLPN  477 (512)
Q Consensus       410 ~~~lkVKWk~~~-------~~~~~~te~~L~~iFs~fG~I~~V~i~~~k---kg~A~V~F~s~~~A~~Ai~~--~~~~~~  477 (512)
                      ...++|-|..+-       +.+..+|...|.++|+.||.|.++.+-.+.   +|+ ||+|++.++|.+||..  +.-+.+
T Consensus        64 ~~~~rim~s~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~  142 (369)
T KOG0123|consen   64 GKPIRIMWSQRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNG  142 (369)
T ss_pred             CcEEEeehhccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCC
Confidence            345666665542       223578999999999999999999887653   789 9999999999999974  444566


Q ss_pred             CceEEEecCCCcccc
Q psy3926         478 CPLTLNYLNPDVERE  492 (512)
Q Consensus       478 ~pL~V~wa~~~~~r~  492 (512)
                      ..+-|.-...+.+|.
T Consensus       143 kki~vg~~~~~~er~  157 (369)
T KOG0123|consen  143 KKIYVGLFERKEERE  157 (369)
T ss_pred             CeeEEeeccchhhhc
Confidence            788888777766665

>KOG0123|consensus

Probab=96.60  E-value=0.0043  Score=66.00  Aligned_cols=65  Identities=22%  Similarity=0.192  Sum_probs=56.7

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCC--CceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCCcc
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKK--RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE  490 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~k--kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~~~  490 (512)
                      .+||..|.++|+.+|+|.+|.||.+.  -|+|+|.|.+..+|.+|+..  -..+.+.|+.|-|....|.
T Consensus         9 ~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~   77 (369)
T KOG0123|consen    9 DVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS   77 (369)
T ss_pred             cCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence            58999999999999999999999764  68999999999999999973  4556789999999976544

>KOG1190|consensus

Probab=96.50  E-value=0.013  Score=62.34  Aligned_cols=75  Identities=17%  Similarity=0.189  Sum_probs=63.5

Q ss_pred             ceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCC
Q psy3926         411 YRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       411 ~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~  488 (512)
                      +.|.+-=+..+   ..+|.|.|-.+|+-||.|..|.|+.+|+-.|+|.|.+...|..|+.+  +..+.+.+|+|++.+..
T Consensus       297 n~vllvsnln~---~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~  373 (492)
T KOG1190|consen  297 NVVLLVSNLNE---EAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT  373 (492)
T ss_pred             ceEEEEecCch---hccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence            44444444333   47999999999999999999999999999999999999999999975  77788899999998753

>KOG0147|consensus

Probab=96.47  E-value=0.0038  Score=68.14  Aligned_cols=62  Identities=21%  Similarity=0.355  Sum_probs=53.5

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN  486 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~  486 (512)
                      -++|++.|+.||..||.|+.|.+..+     .+|++||+|.+.+.|.+|..  +++.+.+.+|+|.-..
T Consensus       288 fNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~  356 (549)
T KOG0147|consen  288 FNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT  356 (549)
T ss_pred             cCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence            47999999999999999999998765     38999999999999999965  4677788888886543

>KOG0130|consensus

Probab=96.42  E-value=0.0048  Score=56.80  Aligned_cols=60  Identities=23%  Similarity=0.321  Sum_probs=50.2

Q ss_pred             CCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecC
Q psy3926          39 YTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN   98 (512)
Q Consensus        39 Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~   98 (512)
                      -++|.+...|.-||+|.||-+.-     =-||-|||||+|.+.|..|+..  -.-+..-++.|-|--
T Consensus        84 atEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F  150 (170)
T KOG0130|consen   84 ATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF  150 (170)
T ss_pred             hhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence            58999999999999999997642     3469999999999999999864  344677889999864

>KOG0127|consensus

Probab=96.40  E-value=0.0046  Score=67.58  Aligned_cols=68  Identities=25%  Similarity=0.306  Sum_probs=55.5

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-----h---cCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-----E---LGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-----~---~~~~~~pL~V~wa~~~~~r  491 (512)
                      -+.||+.|.+.|++||.|..+.|+.++     +|+|||.|.+..+|.++|..     +   +-+.+.-|.|+-|-++.+.
T Consensus       302 fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA  381 (678)
T KOG0127|consen  302 FDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEA  381 (678)
T ss_pred             ccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHH
Confidence            368899999999999999999888643     89999999999999999974     2   2345577888888776554


Q ss_pred             c
Q psy3926         492 E  492 (512)
Q Consensus       492 ~  492 (512)
                      .
T Consensus       382 ~  382 (678)
T KOG0127|consen  382 A  382 (678)
T ss_pred             H
Confidence            3

>KOG4207|consensus

Probab=96.37  E-value=0.0043  Score=60.70  Aligned_cols=49  Identities=27%  Similarity=0.431  Sum_probs=42.6

Q ss_pred             CCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhhhCC
Q psy3926          39 YTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYELGL   87 (512)
Q Consensus        39 Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g~   87 (512)
                      =+.|.|+.+|.|||.|-||-|.     ...+|-|+|-|..+.+|+-|+..--|.
T Consensus        25 Tspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~   78 (256)
T KOG4207|consen   25 TSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGA   78 (256)
T ss_pred             CCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcce
Confidence            5899999999999999999874     467899999999999999998764443

>KOG0153|consensus

Probab=96.32  E-value=0.016  Score=60.48  Aligned_cols=59  Identities=22%  Similarity=0.455  Sum_probs=47.5

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCCC-----CCCcEEeecCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLP-----NCPLTLNYLNP   99 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~~-----~nPl~~~~l~~   99 (512)
                      +.++-+|+.-|-+||+|..|+|... +|+|+|.|.|+.||+.|..  .+.-     .-=|+|.|=.|
T Consensus       239 ~v~e~dIrdhFyqyGeirsi~~~~~-~~CAFv~ftTR~aAE~Aae--~~~n~lvI~G~Rl~i~Wg~~  302 (377)
T KOG0153|consen  239 EVLEQDIRDHFYQYGEIRSIRILPR-KGCAFVTFTTREAAEKAAE--KSFNKLVINGFRLKIKWGRP  302 (377)
T ss_pred             chhHHHHHHHHhhcCCeeeEEeecc-cccceeeehhhHHHHHHHH--hhcceeeecceEEEEEeCCC
Confidence            6899999999999999999988765 5799999999999998874  3321     11377787666

>KOG0109|consensus

Probab=96.22  E-value=0.0086  Score=61.20  Aligned_cols=61  Identities=18%  Similarity=0.225  Sum_probs=52.7

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~  488 (512)
                      ...++..|+.+|.+||+|..+.|++   +++||..++...|..||++  +..+.+..|.|+=+..+
T Consensus        12 ~~~~~~elr~lFe~ygkVlECDIvK---NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK   74 (346)
T KOG0109|consen   12 REATEQELRSLFEQYGKVLECDIVK---NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK   74 (346)
T ss_pred             cccchHHHHHHHHhhCceEeeeeec---ccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence            5789999999999999999999875   5999999999999999985  66677778888776554

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=96.13  E-value=0.014  Score=55.32  Aligned_cols=63  Identities=32%  Similarity=0.442  Sum_probs=52.0

Q ss_pred             CCCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCC
Q psy3926          37 DVYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLNP   99 (512)
Q Consensus        37 ~~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~   99 (512)
                      ..++++.|+.+|++||.|..+.|.     .+.+|-|+|+|.+.+.|..|+..-.|.  ...||.|.|..+
T Consensus       125 ~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~  194 (306)
T COG0724         125 YDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP  194 (306)
T ss_pred             CCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence            369999999999999999887653     367899999999999999999875543  455688888754

>KOG0131|consensus

Probab=96.12  E-value=0.0075  Score=57.96  Aligned_cols=65  Identities=17%  Similarity=0.217  Sum_probs=51.6

Q ss_pred             CCCCHHHHHHHhhccCCeeEE--EEc----cCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCCc
Q psy3926         425 DVYTRESLTKIFSKYGKINIL--VIS----PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V--~i~----~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~~  489 (512)
                      ..+||..|-.+|+.||.|...  +|.    .+.+|+|+|.|++.+++.+||..  +.-+.+.|++|.++..+.
T Consensus       106 ~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~  178 (203)
T KOG0131|consen  106 PEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKD  178 (203)
T ss_pred             cchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecC
Confidence            369999999999999998542  111    24589999999999999999985  444566899999997653

>KOG0149|consensus

Probab=96.09  E-value=0.0075  Score=59.97  Aligned_cols=44  Identities=27%  Similarity=0.525  Sum_probs=38.0

Q ss_pred             CHHHHHHHHhhcCcccEEEe-c----cCCCceEEEEeccHHHHHHHHHh
Q psy3926          40 TRESLTKIFSKYGKINILVI-S----PKKRGSALLEFEHADSARRAKLY   83 (512)
Q Consensus        40 ~~~~l~~~f~kyG~v~~~v~-~----~k~~g~A~vef~~~~aa~~a~~~   83 (512)
                      ..|.|+++|.+||+|+..|| +    .+.||-.+|-|.+.++|..|.++
T Consensus        25 ~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d   73 (247)
T KOG0149|consen   25 HKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD   73 (247)
T ss_pred             chHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC
Confidence            46789999999999987654 3    47889999999999999999864

>KOG0110|consensus

Probab=96.09  E-value=0.005  Score=69.01  Aligned_cols=74  Identities=20%  Similarity=0.323  Sum_probs=61.8

Q ss_pred             cceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh--hcCCCCCceEE
Q psy3926         410 NYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY--ELGLPNCPLTL  482 (512)
Q Consensus       410 ~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V  482 (512)
                      ...|.|+--.-     .-+...++.||..||.|.+|.|+++     .+|+|||+|-+..+|.+|+.+  .+.+.+..|.+
T Consensus       613 ~tKIlVRNipF-----eAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVL  687 (725)
T KOG0110|consen  613 GTKILVRNIPF-----EATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVL  687 (725)
T ss_pred             cceeeeeccch-----HHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhhe
Confidence            34566665544     3688999999999999999999975     279999999999999999864  68888899999


Q ss_pred             EecCCC
Q psy3926         483 NYLNPD  488 (512)
Q Consensus       483 ~wa~~~  488 (512)
                      .||...
T Consensus       688 EwA~~d  693 (725)
T KOG0110|consen  688 EWAKSD  693 (725)
T ss_pred             ehhccc
Confidence            999864

>KOG0122|consensus

Probab=96.06  E-value=0.012  Score=58.83  Aligned_cols=63  Identities=25%  Similarity=0.433  Sum_probs=52.5

Q ss_pred             CCCHHHHHHHHhhcCcccEEEe-----ccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVI-----SPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~-----~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      .-+++.|++||.+||.|.-|-|     ....||-|+|=|.+.+.|..|+..  -.|+-+.=|.|+|-.|.
T Consensus       200 d~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP~  269 (270)
T KOG0122|consen  200 DMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKPS  269 (270)
T ss_pred             ccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCCC
Confidence            5789999999999999998854     236789999999999999999974  56665555999998775

>KOG0117|consensus

Probab=96.00  E-value=0.013  Score=62.93  Aligned_cols=59  Identities=25%  Similarity=0.312  Sum_probs=47.8

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEcc-----CCCceEEEEEcCHHHHHHHHHh--hcCC-CCCceEEE
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGL-PNCPLTLN  483 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~-----~kkg~A~V~F~s~~~A~~Ai~~--~~~~-~~~pL~V~  483 (512)
                      .++.||+|..+|.+-|+|-++.|..     +.+|+|||.|.+.+.|..||+.  +.++ .+.+|.|.
T Consensus        93 rD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc  159 (506)
T KOG0117|consen   93 RDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC  159 (506)
T ss_pred             ccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence            3688999999999999999998764     4699999999999999999973  2322 44566664

>KOG4208|consensus

Probab=95.95  E-value=0.015  Score=56.85  Aligned_cols=63  Identities=21%  Similarity=0.360  Sum_probs=51.3

Q ss_pred             CCCHHHHHHHhhcc-CCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926         426 VYTRESLTKIFSKY-GKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       426 ~~te~~L~~iFs~f-G~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~  488 (512)
                      ++.+..+..+|.+| |.|..+++..+     .+|||||+|++.+-|.=|-.  +++-+...-|.|.+..+.
T Consensus        60 g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe  130 (214)
T KOG4208|consen   60 GFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE  130 (214)
T ss_pred             chhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence            57888899999988 77777777653     48999999999999987764  466677788999998665

>KOG0126|consensus

Probab=95.87  E-value=0.0012  Score=63.22  Aligned_cols=62  Identities=21%  Similarity=0.266  Sum_probs=53.8

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN  486 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~  486 (512)
                      -..||.+|--.||+||.|.+|.+..++     +|+||+.|++.-+-..||.+  +..+.+..|+|....
T Consensus        45 ~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~  113 (219)
T KOG0126|consen   45 YELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS  113 (219)
T ss_pred             ccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence            357899999999999999999988654     89999999999999999964  677788999997664

>KOG0113|consensus

Probab=95.81  E-value=0.016  Score=59.36  Aligned_cols=49  Identities=29%  Similarity=0.498  Sum_probs=42.9

Q ss_pred             CCHHHHHHHHhhcCcccEEE-----eccCCCceEEEEeccHHHHHHHHHhhhCC
Q psy3926          39 YTRESLTKIFSKYGKINILV-----ISPKKRGSALLEFEHADSARRAKLYELGL   87 (512)
Q Consensus        39 Y~~~~l~~~f~kyG~v~~~v-----~~~k~~g~A~vef~~~~aa~~a~~~e~g~   87 (512)
                      =++..|++.|++||.|..|.     |..|.+|=|+|||.+..+-.+|.+.--|+
T Consensus       113 T~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~  166 (335)
T KOG0113|consen  113 TSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGI  166 (335)
T ss_pred             ccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCc
Confidence            37999999999999999995     35689999999999999999998765555

>KOG1456|consensus

Probab=95.54  E-value=0.023  Score=59.84  Aligned_cols=63  Identities=30%  Similarity=0.444  Sum_probs=54.0

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCC--CceEEEecCCC
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPN--CPLTLNYLNPD  488 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~--~pL~V~wa~~~  488 (512)
                      .+|.|.|..|.-.-|+|..|+|.++.--+|.|||++.+.|.+|..+  +...-+  +.|+|+||++.
T Consensus       133 pItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~  199 (494)
T KOG1456|consen  133 PITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT  199 (494)
T ss_pred             ccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence            6999999999999999999999998888999999999999999864  222222  68999999765

>KOG0110|consensus

Probab=95.49  E-value=0.036  Score=62.35  Aligned_cols=61  Identities=33%  Similarity=0.333  Sum_probs=54.1

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCC--------CceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecC
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKK--------RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN  486 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~k--------kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~  486 (512)
                      ..|.+.|...|..+|.|.+|.|..++        .|+|||+|.+.++|.+|++.  ++.+.++.|.|++..
T Consensus       526 ~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~  596 (725)
T KOG0110|consen  526 DTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE  596 (725)
T ss_pred             ccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence            46689999999999999999998643        29999999999999999986  688888999999988

>KOG0114|consensus

Probab=95.46  E-value=0.046  Score=48.40  Aligned_cols=63  Identities=29%  Similarity=0.413  Sum_probs=51.6

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec--cCCCceEEEEeccHHHHHHHHHhhhCCCCC--CcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS--PKKRGSALLEFEHADSARRAKLYELGLPNC--PLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~--~k~~g~A~vef~~~~aa~~a~~~e~g~~~n--Pl~~~~l~~~  100 (512)
                      ..|.|..-.||.+||.|.-|-|.  +.-+|+|+|+|.+..+|..|+.-=.|.--.  +|.+-...|.
T Consensus        29 ~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~   95 (124)
T KOG0114|consen   29 KITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE   95 (124)
T ss_pred             cccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence            47899999999999999999874  466899999999999999999877776444  4777665543

>PF15023 DUF4523: Protein of unknown function (DUF4523)

Probab=95.39  E-value=0.045  Score=50.92  Aligned_cols=77  Identities=18%  Similarity=0.281  Sum_probs=60.8

Q ss_pred             CCCCcceEEEEeecCCCCCCCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeec
Q psy3926          19 NPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYL   97 (512)
Q Consensus        19 ~~~~~~lk~~Wk~~~~~~~~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l   97 (512)
                      ++-..-|-|+|-..- -..-++...+..-+++||.|..|-++.+  -+|||.|.+..+|=.|+.. ..+-|.+=+.++|.
T Consensus        83 epPMsTIVVRWlkkn-m~~~edl~sV~~~Ls~fGpI~SVT~cGr--qsavVvF~d~~SAC~Av~Af~s~~pgtm~qCsWq  159 (166)
T PF15023_consen   83 EPPMSTIVVRWLKKN-MQPTEDLKSVIQRLSVFGPIQSVTLCGR--QSAVVVFKDITSACKAVSAFQSRAPGTMFQCSWQ  159 (166)
T ss_pred             CCCceeEEeehhhhc-CChHHHHHHHHHHHHhcCCcceeeecCC--ceEEEEehhhHHHHHHHHhhcCCCCCceEEeecc
Confidence            566677889996422 2234677777888899999999999876  4999999999999888853 66777888999997


Q ss_pred             C
Q psy3926          98 N   98 (512)
Q Consensus        98 ~   98 (512)
                      .
T Consensus       160 q  160 (166)
T PF15023_consen  160 Q  160 (166)
T ss_pred             c
Confidence            5

>KOG4661|consensus

Probab=95.28  E-value=0.027  Score=62.00  Aligned_cols=62  Identities=16%  Similarity=0.217  Sum_probs=52.6

Q ss_pred             HHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCCcc
Q psy3926         429 RESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE  490 (512)
Q Consensus       429 e~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~~~  490 (512)
                      -.+|..||++||.|....|..+     -+.|+||++.+.++|.++|.+  .+.+.+..|.|.-+.-+|-
T Consensus       419 AtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNEp~  487 (940)
T KOG4661|consen  419 ATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNEPG  487 (940)
T ss_pred             hhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccCcc
Confidence            5789999999999988766543     278999999999999999974  7889999999988875543

>KOG0124|consensus

Probab=95.07  E-value=0.035  Score=58.28  Aligned_cols=66  Identities=14%  Similarity=0.221  Sum_probs=53.0

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEcc-----CCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCCccc
Q psy3926         426 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~-----~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~~~r  491 (512)
                      +.+|++|+..|..||+|..+.+..     ..+||+||+|.+..+...||..  -+.+.+.-|+|--.-.||..
T Consensus       221 DLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~a  293 (544)
T KOG0124|consen  221 DLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDA  293 (544)
T ss_pred             CccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCch
Confidence            589999999999999999998864     4699999999999999999963  35555566777666555443

>KOG1456|consensus

Probab=95.03  E-value=0.082  Score=55.83  Aligned_cols=75  Identities=17%  Similarity=0.212  Sum_probs=60.5

Q ss_pred             cceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCC
Q psy3926         410 NYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNP  487 (512)
Q Consensus       410 ~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~  487 (512)
                      .-.|..-+-...   +.++-|.|-.||=.||.|+.|.+.+.+.|+|+|++.+..+.++||.+  +..+.+..|.|.....
T Consensus       286 ~g~VmMVyGLdh---~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ  362 (494)
T KOG1456|consen  286 PGCVMMVYGLDH---GKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ  362 (494)
T ss_pred             CCcEEEEEeccc---cccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence            334554454432   46889999999999999999999999999999999999999999975  5666777777776654

>KOG0431|consensus

Probab=94.98  E-value=0.03  Score=61.20  Aligned_cols=46  Identities=35%  Similarity=0.409  Sum_probs=34.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-------HHHHHHHHHHHHHHH
Q psy3926         259 ELTIDCSEQDIRSAYRKKALKCHPDKNPDDK-------KAIETFHLLSKAIEV  304 (512)
Q Consensus       259 gv~~~As~~eIKkAYRkLa~k~HPDk~~~~~-------~a~~~F~~I~~AYev  304 (512)
                      +|..=.+.++|||+|||..+..||||.++.+       -|++.|..+++|+..
T Consensus       395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~  447 (453)
T KOG0431|consen  395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK  447 (453)
T ss_pred             chhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence            3444579999999999999999999976542       245666666666654

>KOG0121|consensus

Probab=94.93  E-value=0.061  Score=49.31  Aligned_cols=61  Identities=28%  Similarity=0.447  Sum_probs=51.2

Q ss_pred             CHHHHHHHHhhcCcccEEEec--c-C--CCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926          40 TRESLTKIFSKYGKINILVIS--P-K--KRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        40 ~~~~l~~~f~kyG~v~~~v~~--~-k--~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~  100 (512)
                      +||.+-+||++-|+|--|||.  + |  -=|-.+|||-+.++|+.|+++=.|  +-+-||.+-|=.+=
T Consensus        49 tEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF  116 (153)
T KOG0121|consen   49 TEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGF  116 (153)
T ss_pred             cHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccc
Confidence            689999999999999999984  2 2  228899999999999999997554  67889999996633

>KOG4212|consensus

Probab=94.90  E-value=0.057  Score=57.93  Aligned_cols=62  Identities=19%  Similarity=0.349  Sum_probs=51.4

Q ss_pred             CCHHHHHHHh-hccCCeeEEEEcc----CCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926         427 YTRESLTKIF-SKYGKINILVISP----KKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       427 ~te~~L~~iF-s~fG~I~~V~i~~----~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~  488 (512)
                      |-=.+|+++| .+-|.|+-|.++-    +.+|||+|+|++.+++++|++  +.+.+...+|.|+...+.
T Consensus        56 ~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~  124 (608)
T KOG4212|consen   56 YRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDE  124 (608)
T ss_pred             hhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCch
Confidence            3346788888 5789999998875    458999999999999999997  478888999999987653

>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif

Probab=94.81  E-value=0.054  Score=41.91  Aligned_cols=40  Identities=18%  Similarity=0.351  Sum_probs=34.3

Q ss_pred             HHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHH
Q psy3926         429 RESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAK  469 (512)
Q Consensus       429 e~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai  469 (512)
                      .+.+...|..||.|.++.+. +....++|.|++..+|+.|+
T Consensus        14 ~~~vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al   53 (53)
T PF14605_consen   14 AEEVLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL   53 (53)
T ss_pred             HHHHHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence            35677789999999998886 45789999999999999985

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.69  E-value=0.019  Score=54.84  Aligned_cols=61  Identities=26%  Similarity=0.360  Sum_probs=49.0

Q ss_pred             hcccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--C-----hHHHHHHHHHHHHHHHc
Q psy3926         245 IMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPD--D-----KKAIETFHLLSKAIEVL  305 (512)
Q Consensus       245 ~~~~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~--~-----~~a~~~F~~I~~AYevL  305 (512)
                      +.......+.|.+||+...++..+|+++|+++...+|||+..+  .     ..+.+.+..|++||+.+
T Consensus       106 ~~~~~~~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         106 AREQLDREDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             HHHcccchhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            3333444799999999999999999999999999999998432  2     24678888999998753

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.67  E-value=0.13  Score=49.04  Aligned_cols=67  Identities=22%  Similarity=0.275  Sum_probs=53.2

Q ss_pred             CcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926         253 DLYGLLELTIDCS--EQDIRSAYRKKALKCHPDKNPDDKK-----AIETFHLLSKAIEVLLDKSARAAYDSVIR  319 (512)
Q Consensus       253 d~YeiLgv~~~As--~~eIKkAYRkLa~k~HPDk~~~~~~-----a~~~F~~I~~AYevLsDp~~R~~YD~~~~  319 (512)
                      |++.++|+++.+.  .+.++..|+.+.+.||||+....+.     +...+..++.||.+|.||-.|..|-....
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~   75 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA   75 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence            4556666666543  4558899999999999999865433     34688999999999999999999987766

>KOG4205|consensus

Probab=94.25  E-value=0.033  Score=58.08  Aligned_cols=66  Identities=18%  Similarity=0.250  Sum_probs=51.4

Q ss_pred             CCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHhh-cCCCCCceEEEecCCCcccc
Q psy3926         427 YTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLYE-LGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       427 ~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~~-~~~~~~pL~V~wa~~~~~r~  492 (512)
                      .|++.|++.|++||.|.++++.++     .+|++||+|++.+...+++... ..+.+..+.++-+.++.+..
T Consensus        18 ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~   89 (311)
T KOG4205|consen   18 TTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQT   89 (311)
T ss_pred             ccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCccccc
Confidence            678999999999999999887764     3899999999999999998653 33455666666666554443

>KOG0533|consensus

Probab=94.08  E-value=0.12  Score=52.12  Aligned_cols=66  Identities=18%  Similarity=0.359  Sum_probs=54.7

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE  490 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~  490 (512)
                      -.+++++|+++|..||.+..|.|.-+    ..|+|-|.|...++|..||+  +++.+.+.++++.-+.++..
T Consensus        93 ~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~~  164 (243)
T KOG0533|consen   93 YGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPSQ  164 (243)
T ss_pred             cCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCccc
Confidence            46889999999999999988888744    47999999999999999997  36777778888877765533

>KOG0132|consensus

Probab=94.05  E-value=0.093  Score=59.76  Aligned_cols=63  Identities=17%  Similarity=0.403  Sum_probs=51.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDV  101 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~  101 (512)
                      ..++.+|..+|..||+|..|+|.-. +|||.|.|-...+|+.|+++  +++..+.=++|.|--...
T Consensus       432 ~v~e~dL~~~feefGeiqSi~li~~-R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G  496 (894)
T KOG0132|consen  432 NVTEQDLANLFEEFGEIQSIILIPP-RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG  496 (894)
T ss_pred             hhhHHHHHHHHHhcccceeEeeccC-CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence            4789999999999999999987654 68999999999999999986  555544446779965433

>KOG4209|consensus

Probab=93.92  E-value=0.12  Score=51.72  Aligned_cols=75  Identities=17%  Similarity=0.239  Sum_probs=59.8

Q ss_pred             eeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEec
Q psy3926         412 RLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL-YELGLPNCPLTLNYL  485 (512)
Q Consensus       412 ~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa  485 (512)
                      ..+..|-.+-+  -+.|-+.+...|..+|.|..|.|+.++     +|+|+|+|.+.+.+..|+. ++..+.+.++.|+|.
T Consensus       100 d~~sv~v~nvd--~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~  177 (231)
T KOG4209|consen  100 DAPSVWVGNVD--FLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK  177 (231)
T ss_pred             CCceEEEeccc--cccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence            44566665533  345656699999999999988888754     7899999999999999998 566677788999998


Q ss_pred             CCC
Q psy3926         486 NPD  488 (512)
Q Consensus       486 ~~~  488 (512)
                      +..
T Consensus       178 r~~  180 (231)
T KOG4209|consen  178 RTN  180 (231)
T ss_pred             eee
Confidence            765

>KOG0146|consensus

Probab=93.76  E-value=0.12  Score=52.65  Aligned_cols=65  Identities=15%  Similarity=0.229  Sum_probs=51.8

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHhh--cCCCCCceEEEecCCCcc
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLYE--LGLPNCPLTLNYLNPDVE  490 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~~--~~~~~~pL~V~wa~~~~~  490 (512)
                      .+.+.+|..+|-.||.|.+..+.-|+     |.++||.|.+..+|.+||..-  +.+.-..|+|..-+++..
T Consensus       296 EFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda  367 (371)
T KOG0146|consen  296 EFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA  367 (371)
T ss_pred             hhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence            48899999999999999887766543     899999999999999999853  333335688877666543

>KOG4454|consensus

Probab=93.66  E-value=0.069  Score=52.91  Aligned_cols=63  Identities=16%  Similarity=0.089  Sum_probs=52.6

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC---CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK---RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNP  487 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k---kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~  487 (512)
                      ..+||+.|.|+|-+-|+|..|.|.+++   -.+|+|.|.+.-+..-|++  ++..+.+.+++|++-.+
T Consensus        19 ~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G   86 (267)
T KOG4454|consen   19 SGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG   86 (267)
T ss_pred             hhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence            358999999999999999999998754   2389999999999999997  46667778888876544

>PLN03213 repressor of silencing 3; Provisional

Probab=93.36  E-value=0.14  Score=55.92  Aligned_cols=45  Identities=27%  Similarity=0.398  Sum_probs=37.1

Q ss_pred             CCCHHHHHHHHhhcCcccEEEe-ccCCCceEEEEeccH--HHHHHHHH
Q psy3926          38 VYTRESLTKIFSKYGKINILVI-SPKKRGSALLEFEHA--DSARRAKL   82 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~-~~k~~g~A~vef~~~--~aa~~a~~   82 (512)
                      .-+++.|+.+|+.||.|.+|-| ..+-||-|.|||.+-  .++..|+.
T Consensus        21 dVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAIS   68 (759)
T PLN03213         21 SVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFS   68 (759)
T ss_pred             CCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHH
Confidence            4689999999999999999954 445689999999987  45666664

>KOG0109|consensus

Probab=93.19  E-value=0.12  Score=53.15  Aligned_cols=60  Identities=20%  Similarity=0.268  Sum_probs=51.0

Q ss_pred             CCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926         427 YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       427 ~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~  489 (512)
                      -+-++|+..|.+||+|....|.   +++|||.|.-.++|..||+  +++.+.+.+++|+-.-.+.
T Consensus        90 ctn~ElRa~fe~ygpviecdiv---kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl  151 (346)
T KOG0109|consen   90 CTNQELRAKFEKYGPVIECDIV---KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL  151 (346)
T ss_pred             ccCHHHhhhhcccCCceeeeee---cceeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence            3468999999999999888886   5699999999999999996  5788888999998765443

>KOG1029|consensus

Probab=93.15  E-value=0.63  Score=53.34  Aligned_cols=48  Identities=21%  Similarity=0.248  Sum_probs=22.7

Q ss_pred             CCCHHHHHHHHhhcCcccEE---E--ec--cCCCceEEEEeccHHHHHHHHHhhhCC
Q psy3926          38 VYTRESLTKIFSKYGKINIL---V--IS--PKKRGSALLEFEHADSARRAKLYELGL   87 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~---v--~~--~k~~g~A~vef~~~~aa~~a~~~e~g~   87 (512)
                      -.|-+.-|-+|-.-|==.-|   |  ++  -|.-..-|+||.  =|+.++...=-|.
T Consensus        31 fitg~qArnfflqS~LP~~VLaqIWALsDldkDGrmdi~EfS--IAmkLi~lkLqG~   85 (1118)
T KOG1029|consen   31 FITGDQARNFFLQSGLPTPVLAQIWALSDLDKDGRMDIREFS--IAMKLIKLKLQGI   85 (1118)
T ss_pred             ccchHhhhhhHHhcCCChHHHHHHHHhhhcCccccchHHHHH--HHHHHHHHHhcCC
Confidence            35666666666654422211   1  11  122234577775  3555555444454

>KOG4660|consensus

Probab=93.07  E-value=0.094  Score=57.70  Aligned_cols=46  Identities=33%  Similarity=0.538  Sum_probs=43.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY   83 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~   83 (512)
                      -.+.+.|+.||++||+|-.|-+...++|-.+|||=++..|+.|++.
T Consensus        86 ~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~  131 (549)
T KOG4660|consen   86 SVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKA  131 (549)
T ss_pred             cCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHH
Confidence            4899999999999999999888889999999999999999999974

>KOG0125|consensus

Probab=92.93  E-value=0.13  Score=53.57  Aligned_cols=58  Identities=22%  Similarity=0.330  Sum_probs=45.8

Q ss_pred             CCcceEEEEeecCCCCCCCCHHHHHHHHhhcCcccEEEe---ccCCCceEEEEeccHHHHHHHHHh
Q psy3926          21 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVI---SPKKRGSALLEFEHADSARRAKLY   83 (512)
Q Consensus        21 ~~~~lk~~Wk~~~~~~~~Y~~~~l~~~f~kyG~v~~~v~---~~k~~g~A~vef~~~~aa~~a~~~   83 (512)
                      +..||-|+=.-     =-|-+-+|+.+|.|||.|+||-|   .+..||-.+|-|.+.++|+.|-+.
T Consensus        95 ~pkRLhVSNIP-----FrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~  155 (376)
T KOG0125|consen   95 TPKRLHVSNIP-----FRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAE  155 (376)
T ss_pred             CCceeEeecCC-----ccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHH
Confidence            44566665322     13777889999999999999965   457789999999999999999864

>KOG0151|consensus

Probab=92.87  E-value=0.36  Score=54.70  Aligned_cols=61  Identities=16%  Similarity=0.244  Sum_probs=50.0

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccC--------CCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecC
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPK--------KRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN  486 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~--------kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~  486 (512)
                      .++|+.|-..|..||+|-+|.|.=-        -+.|+||-|.+..+|++|++.  +.-....++++-|..
T Consensus       185 sv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk  255 (877)
T KOG0151|consen  185 SVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGK  255 (877)
T ss_pred             cccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecccc
Confidence            4899999999999999999987621        278999999999999999975  333455677888874

>KOG0106|consensus

Probab=92.83  E-value=0.069  Score=52.90  Aligned_cols=59  Identities=24%  Similarity=0.249  Sum_probs=49.3

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCC
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNP  487 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~  487 (512)
                      ...+.+|.++|..||.|.+|.|   +.|++||+|.+.-+|..||..  ...+...-+.|.|+.+
T Consensus        12 ~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~   72 (216)
T KOG0106|consen   12 RARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG   72 (216)
T ss_pred             ccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence            3568899999999999999988   678999999999999999964  3444444589999984

>KOG4660|consensus

Probab=92.69  E-value=0.11  Score=57.09  Aligned_cols=60  Identities=27%  Similarity=0.439  Sum_probs=49.2

Q ss_pred             CCCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh
Q psy3926         407 NPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY  471 (512)
Q Consensus       407 ~~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~  471 (512)
                      +..+.+|-| .+..    ..+++++|..||+.||.|..|.+...++|-.||+|=++-+|+.|++.
T Consensus        72 ~~~~~~L~v-~nl~----~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~  131 (549)
T KOG4660|consen   72 DMNQGTLVV-FNLP----RSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKA  131 (549)
T ss_pred             cCccceEEE-EecC----CcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHH
Confidence            344455544 3333    36999999999999999999998888999999999999999999973

>KOG0105|consensus

Probab=92.60  E-value=0.11  Score=50.44  Aligned_cols=60  Identities=23%  Similarity=0.401  Sum_probs=45.6

Q ss_pred             CCCCHHHHHHHHhhcCcccEEEecc--CCCceEEEEeccHHHHHHHHHhhhCCC--CCCcEEee
Q psy3926          37 DVYTRESLTKIFSKYGKINILVISP--KKRGSALLEFEHADSARRAKLYELGLP--NCPLTLNY   96 (512)
Q Consensus        37 ~~Y~~~~l~~~f~kyG~v~~~v~~~--k~~g~A~vef~~~~aa~~a~~~e~g~~--~nPl~~~~   96 (512)
                      ++.-+..+..||.|||.|..|-+..  .-.+-|+|||++..+|+-|+.---|+-  .+-|.|++
T Consensus        16 ~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf   79 (241)
T KOG0105|consen   16 GDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF   79 (241)
T ss_pred             cchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence            3477888999999999999997743  335789999999999999995444432  23455554

>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif

Probab=92.41  E-value=0.25  Score=38.15  Aligned_cols=43  Identities=16%  Similarity=0.339  Sum_probs=34.6

Q ss_pred             CCCH---HHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHH
Q psy3926          38 VYTR---ESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAK   81 (512)
Q Consensus        38 ~Y~~---~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~   81 (512)
                      ||+.   +.+++.|..||+|+++-+. .+.-.+.|.|++..+|+.|+
T Consensus         8 Gf~~~~~~~vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al   53 (53)
T PF14605_consen    8 GFPPDLAEEVLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL   53 (53)
T ss_pred             eECchHHHHHHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence            5654   4466789999999998887 23458999999999999985

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=92.25  E-value=0.69  Score=48.53  Aligned_cols=52  Identities=25%  Similarity=0.382  Sum_probs=39.2

Q ss_pred             HHHhhccCCeeEEEEccCC------CceE--EEEEcCHHHHHHHHHh--hcCCCCCceEEEe
Q psy3926         433 TKIFSKYGKINILVISPKK------RGSA--LLEFEHADSARRAKLY--ELGLPNCPLTLNY  484 (512)
Q Consensus       433 ~~iFs~fG~I~~V~i~~~k------kg~A--~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~w  484 (512)
                      .++|.+||.|..|+|.++-      .+-+  +|.|.+.++|.++|..  +.-+.+..|+..|
T Consensus       138 ~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatY  199 (480)
T COG5175         138 HEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATY  199 (480)
T ss_pred             hhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeec
Confidence            3889999999999997642      1223  9999999999999974  4444556666654

>KOG0108|consensus

Probab=92.16  E-value=0.86  Score=49.72  Aligned_cols=65  Identities=26%  Similarity=0.277  Sum_probs=55.0

Q ss_pred             CCCCHHHHHHHHhhcCcccEEEe-----ccCCCceEEEEeccHHHHHHHHHhhhCCCCCC--cEEeecCCCc
Q psy3926          37 DVYTRESLTKIFSKYGKINILVI-----SPKKRGSALLEFEHADSARRAKLYELGLPNCP--LTLNYLNPDV  101 (512)
Q Consensus        37 ~~Y~~~~l~~~f~kyG~v~~~v~-----~~k~~g~A~vef~~~~aa~~a~~~e~g~~~nP--l~~~~l~~~~  101 (512)
                      ...++|.|..||+.+|.|.++-+     +.+-+|-|.+||.+.+.|..|+++=.|.--++  |+|.|=.-..
T Consensus        28 ~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~   99 (435)
T KOG0108|consen   28 YEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRK   99 (435)
T ss_pred             CcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccc
Confidence            35899999999999999999954     45888999999999999999999877766665  9999877443

>KOG0116|consensus

Probab=91.71  E-value=0.22  Score=53.94  Aligned_cols=63  Identities=24%  Similarity=0.275  Sum_probs=49.2

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEcc-----CCCceEEEEEcCHHHHHHHHHhh-cCCCCCceEEEecCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYE-LGLPNCPLTLNYLNP  487 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~-----~kkg~A~V~F~s~~~A~~Ai~~~-~~~~~~pL~V~wa~~  487 (512)
                      -+.+++.|.+.|..||.|+..-|.-     +..++|||+|.+.+++..||+.. ..+.+..|.|+.-++
T Consensus       298 ~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~  366 (419)
T KOG0116|consen  298 PDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP  366 (419)
T ss_pred             CCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence            4689999999999999998876543     22489999999999999999853 444556677765544

>KOG1190|consensus

Probab=91.65  E-value=0.27  Score=52.56  Aligned_cols=59  Identities=22%  Similarity=0.268  Sum_probs=50.4

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEee
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNY   96 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~   96 (512)
                      -.|.|.|.-+|.-||+|.-|-|--+|+-.|||.|++...|.+|+..=-|.  -+.||.|..
T Consensus       309 ~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~  369 (492)
T KOG1190|consen  309 AVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTL  369 (492)
T ss_pred             ccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEee
Confidence            48999999999999999999988888899999999999999999764443  346677664

>KOG1855|consensus

Probab=91.30  E-value=0.16  Score=54.44  Aligned_cols=45  Identities=36%  Similarity=0.547  Sum_probs=39.4

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccC-----------C-------CceEEEEEcCHHHHHHHHH
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPK-----------K-------RGSALLEFEHADSARRAKL  470 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~-----------k-------kg~A~V~F~s~~~A~~Ai~  470 (512)
                      +..-+.|.+||+.+|.|.+|.||+-           +       +-||+|+|...++|.+|..
T Consensus       242 Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e  304 (484)
T KOG1855|consen  242 DHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE  304 (484)
T ss_pred             chHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence            4555999999999999999999963           1       6799999999999999986

>KOG0147|consensus

Probab=90.99  E-value=0.38  Score=53.08  Aligned_cols=59  Identities=17%  Similarity=0.220  Sum_probs=48.2

Q ss_pred             CCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecC
Q psy3926         427 YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN  486 (512)
Q Consensus       427 ~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~  486 (512)
                      +-+|.+.++ ++||.|.+|.|-+..-||.+|-|.+.+.|..|+..  +.=+.+..|+.+|..
T Consensus       466 I~edV~Eec-~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~  526 (549)
T KOG0147|consen  466 IREDVIEEC-GKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP  526 (549)
T ss_pred             HHHHHHHHH-HhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence            445566666 99999999999887779999999999999999974  555666788888874

>KOG4205|consensus

Probab=90.78  E-value=0.27  Score=51.33  Aligned_cols=68  Identities=21%  Similarity=0.295  Sum_probs=55.3

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCCCcccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      .++++.+|++.|.+||.|..+++..+     .+|+++|.|.+.+++..++.. -..+....+.|.=|.++....
T Consensus       107 ~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk~~~~  180 (311)
T KOG4205|consen  107 PDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPKEVMQ  180 (311)
T ss_pred             CCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccchhhcc
Confidence            47999999999999999999887653     489999999999999999864 355666778888777765544

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=90.73  E-value=0.38  Score=42.40  Aligned_cols=45  Identities=20%  Similarity=0.380  Sum_probs=30.1

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY  471 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~  471 (512)
                      ..+-++|++.|+.||.|.-|.+... -..|+|-|.+.++|..|+..
T Consensus        12 ~~~re~iK~~f~~~g~V~yVD~~~G-~~~g~VRf~~~~~A~~a~~~   56 (105)
T PF08777_consen   12 PTSREDIKEAFSQFGEVAYVDFSRG-DTEGYVRFKTPEAAQKALEK   56 (105)
T ss_dssp             S--HHHHHHHT-SS--EEEEE--TT--SEEEEEESS---HHHHHHH
T ss_pred             CcCHHHHHHHHHhcCCcceEEecCC-CCEEEEEECCcchHHHHHHH
Confidence            5779999999999999999988753 35899999999999999973

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>KOG2314|consensus

Probab=90.70  E-value=0.33  Score=53.80  Aligned_cols=47  Identities=30%  Similarity=0.389  Sum_probs=41.0

Q ss_pred             HHHHHHHHhhcCcccEEEec----cCCCceEEEEeccHHHHHHHHHhhhCC
Q psy3926          41 RESLTKIFSKYGKINILVIS----PKKRGSALLEFEHADSARRAKLYELGL   87 (512)
Q Consensus        41 ~~~l~~~f~kyG~v~~~v~~----~k~~g~A~vef~~~~aa~~a~~~e~g~   87 (512)
                      +-.|.++|+|||.|+++.+.    .+-+|-+++||++...|..|+++=-|.
T Consensus        78 k~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~  128 (698)
T KOG2314|consen   78 KKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGK  128 (698)
T ss_pred             HHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccc
Confidence            45678999999999999985    467899999999999999999976664

>KOG1855|consensus

Probab=88.86  E-value=0.26  Score=52.98  Aligned_cols=60  Identities=30%  Similarity=0.408  Sum_probs=44.1

Q ss_pred             CCHHHHHHHHhhcCcccEEEeccC-----------C-------CceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecC
Q psy3926          39 YTRESLTKIFSKYGKINILVISPK-----------K-------RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN   98 (512)
Q Consensus        39 Y~~~~l~~~f~kyG~v~~~v~~~k-----------~-------~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~   98 (512)
                      -..+.|++||+.+|.|.+|-|+.-           +       +=+|||||.+.++|.-|...  +-+.--+=|++.-|.
T Consensus       243 h~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~~wr~glkvkLl~  322 (484)
T KOG1855|consen  243 HSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQNWRMGLKVKLLG  322 (484)
T ss_pred             hHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhhhhhhcchhhhhh
Confidence            345999999999999999987653           2       57899999999999998763  333333334444444

>KOG0106|consensus

Probab=88.60  E-value=0.26  Score=48.95  Aligned_cols=58  Identities=19%  Similarity=0.251  Sum_probs=48.5

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN  486 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~  486 (512)
                      -+...+|.++|..||.+..+++   +.+.|||+|++..+|..|+.  ++..+.+.+|++....
T Consensus       110 r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~  169 (216)
T KOG0106|consen  110 RVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNS  169 (216)
T ss_pred             hhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccchhhcCceeeecccC
Confidence            4667899999999999955554   78999999999999999996  4778888999994443

>KOG0533|consensus

Probab=88.59  E-value=1.1  Score=45.37  Aligned_cols=65  Identities=20%  Similarity=0.391  Sum_probs=52.3

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec----cCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS----PKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~----~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~  102 (512)
                      ||+.++|+++|..||++.-+.|.    ....|+|-|-|.....|++|++.=-|  +-.-|+++.-++++..
T Consensus        94 ~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~~  164 (243)
T KOG0533|consen   94 GVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPSQ  164 (243)
T ss_pred             CcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCccc
Confidence            79999999999999988888773    46679999999999999999985333  3344688887776533

>KOG0415|consensus

Probab=87.55  E-value=0.48  Score=49.95  Aligned_cols=53  Identities=38%  Similarity=0.543  Sum_probs=40.7

Q ss_pred             EEEeecCCCCCCCCHHHHHHHHhhcCcccEE-EeccCCCc----eEEEEeccHHHHHHHH
Q psy3926          27 IRWKSSSTDTDVYTRESLTKIFSKYGKINIL-VISPKKRG----SALLEFEHADSARRAK   81 (512)
Q Consensus        27 ~~Wk~~~~~~~~Y~~~~l~~~f~kyG~v~~~-v~~~k~~g----~A~vef~~~~aa~~a~   81 (512)
                      |=+-|+-+.  .-+.|+|.-|||.||.|..- ||.-.|-|    -|+|||.++++|+.|.
T Consensus       241 VLFVCKLNP--VTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~Ay  298 (479)
T KOG0415|consen  241 VLFVCKLNP--VTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAY  298 (479)
T ss_pred             eEEEEecCC--cccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHH
Confidence            334454432  45678999999999999987 56555555    4899999999999987

>KOG2135|consensus

Probab=87.18  E-value=0.52  Score=51.28  Aligned_cols=79  Identities=19%  Similarity=0.181  Sum_probs=60.2

Q ss_pred             cceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHH-HhhcCCCCCceEEEecCCC
Q psy3926         410 NYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAK-LYELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       410 ~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai-~~~~~~~~~pL~V~wa~~~  488 (512)
                      .+.|.+.=...    +.-|-.+|...|.+||.|+.|.|.-. --.|+|+|.+..+|-.|- -++..+.+.+|+|-|..+-
T Consensus       372 hs~l~lek~~~----glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps  446 (526)
T KOG2135|consen  372 HSPLALEKSPF----GLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS  446 (526)
T ss_pred             cchhhhhccCC----CCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhccccceecCceeEEEEecCC
Confidence            34455543332    56788999999999999999987543 458999999999995554 4677788899999999986


Q ss_pred             ccccc
Q psy3926         489 VEREE  493 (512)
Q Consensus       489 ~~r~~  493 (512)
                      +....
T Consensus       447 ~~tn~  451 (526)
T KOG2135|consen  447 PVTNI  451 (526)
T ss_pred             cccCc
Confidence            65554

>KOG4208|consensus

Probab=86.88  E-value=1.1  Score=44.27  Aligned_cols=64  Identities=19%  Similarity=0.328  Sum_probs=47.9

Q ss_pred             CCCCHHHHHHHHhhc-CcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCCC
Q psy3926          37 DVYTRESLTKIFSKY-GKINILVISP-----KKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLNPD  100 (512)
Q Consensus        37 ~~Y~~~~l~~~f~ky-G~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~~  100 (512)
                      .|+.+-.+..+|..| |.|.-+++++     +.||=|+|||.+.+-|.-|...=.++  ...=|.+..+.|.
T Consensus        59 ~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe  130 (214)
T KOG4208|consen   59 HGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE  130 (214)
T ss_pred             cchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence            378888888998888 7777777765     45699999999999999877543332  2334777877666

>KOG0111|consensus

Probab=86.72  E-value=0.71  Score=45.96  Aligned_cols=65  Identities=31%  Similarity=0.402  Sum_probs=51.1

Q ss_pred             CCHHHHHHHHhhcCcccEEEe-----ccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926          39 YTRESLTKIFSKYGKINILVI-----SPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        39 Y~~~~l~~~f~kyG~v~~~v~-----~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~  103 (512)
                      .|+..|..-|=-||||.+|-|     +.|-+|-|+|||...++|.+|+-|  |.-|-.--|+|..-.|.-..
T Consensus        22 VtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~kik   93 (298)
T KOG0111|consen   22 VTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKIK   93 (298)
T ss_pred             HHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCcccc
Confidence            566677777888999999976     569999999999999999999975  55555556777766665443

>KOG4211|consensus

Probab=85.85  E-value=2.5  Score=46.35  Aligned_cols=58  Identities=21%  Similarity=0.268  Sum_probs=45.3

Q ss_pred             CCHHHHHHHhhccCCeeEEEEccC---CCceEEEEEcCHHHHHHHHHhhcCCCCCc-eEEEec
Q psy3926         427 YTRESLTKIFSKYGKINILVISPK---KRGSALLEFEHADSARRAKLYELGLPNCP-LTLNYL  485 (512)
Q Consensus       427 ~te~~L~~iFs~fG~I~~V~i~~~---kkg~A~V~F~s~~~A~~Ai~~~~~~~~~p-L~V~wa  485 (512)
                      -|+++|.++|+..+ |+++++...   ..|-|+|||++.+++.+|++.+-...+++ |.|=-+
T Consensus        22 at~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~   83 (510)
T KOG4211|consen   22 ATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTA   83 (510)
T ss_pred             ccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEcc
Confidence            68999999999776 888877753   47999999999999999998765555544 555333

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=84.57  E-value=2.9  Score=35.89  Aligned_cols=54  Identities=19%  Similarity=0.323  Sum_probs=35.1

Q ss_pred             HHHHHHHhhccC-CeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCC
Q psy3926         429 RESLTKIFSKYG-KINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNP  487 (512)
Q Consensus       429 e~~L~~iFs~fG-~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~  487 (512)
                      ..-|+.|+...| .|.+|     ..++|+|-|.+.+.|.+|.+.  +-...+.-|.|.|...
T Consensus        20 ~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~   76 (90)
T PF11608_consen   20 KNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK   76 (90)
T ss_dssp             HHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred             HHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence            345677777886 67555     258999999999999999873  3445678899999843

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>KOG0126|consensus

Probab=84.50  E-value=0.11  Score=50.27  Aligned_cols=62  Identities=26%  Similarity=0.362  Sum_probs=51.1

Q ss_pred             EEEEeecCCCC-----CC----CCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhCC
Q psy3926          26 RIRWKSSSTDT-----DV----YTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELGL   87 (512)
Q Consensus        26 k~~Wk~~~~~~-----~~----Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g~   87 (512)
                      |.+|-..=-|.     ||    -|+.+|.-+||.||+|+||.+.+     |.+|-|++=|.+...-.+||-|=.|.
T Consensus        25 ~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGi  100 (219)
T KOG0126|consen   25 KKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGI  100 (219)
T ss_pred             ccchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCc
Confidence            78998765554     43    57889999999999999997643     78899999999999999999765554

>KOG4212|consensus

Probab=83.85  E-value=1.9  Score=46.80  Aligned_cols=70  Identities=19%  Similarity=0.219  Sum_probs=54.3

Q ss_pred             ceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEec
Q psy3926         411 YRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYL  485 (512)
Q Consensus       411 ~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa  485 (512)
                      ++|.|+=     .+-++|=..|++-|..||.|..+.|...-+..++|.|.+.+.|+.|+.  ++..+....|.|+|.
T Consensus       537 ~qIiirN-----lP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~  608 (608)
T KOG4212|consen  537 CQIIIRN-----LPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF  608 (608)
T ss_pred             cEEEEec-----CCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence            4566652     234799999999999999999888844333444999999999999987  466677788998874

>KOG2314|consensus

Probab=83.07  E-value=1.7  Score=48.48  Aligned_cols=55  Identities=27%  Similarity=0.358  Sum_probs=42.3

Q ss_pred             HHHHHHHhhccCCeeEEEEcc----CCCceEEEEEcCHHHHHHHHHh--hcCCC-CCceEEE
Q psy3926         429 RESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLY--ELGLP-NCPLTLN  483 (512)
Q Consensus       429 e~~L~~iFs~fG~I~~V~i~~----~kkg~A~V~F~s~~~A~~Ai~~--~~~~~-~~pL~V~  483 (512)
                      ...|..+|++||+|..+.++.    +-+|++|++|++..+|..||+.  +..+. ++.+.|.
T Consensus        78 k~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~  139 (698)
T KOG2314|consen   78 KKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVR  139 (698)
T ss_pred             HHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEee
Confidence            356678899999999999984    3489999999999999999984  33322 2445553

>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []

Probab=82.69  E-value=2.7  Score=36.91  Aligned_cols=59  Identities=15%  Similarity=0.148  Sum_probs=41.2

Q ss_pred             CHHHHHHHhhccCCeeEEE------------EccCCCceEEEEEcCHHHHHHHHHh-hcCCCCC-ceEEEecC
Q psy3926         428 TRESLTKIFSKYGKINILV------------ISPKKRGSALLEFEHADSARRAKLY-ELGLPNC-PLTLNYLN  486 (512)
Q Consensus       428 te~~L~~iFs~fG~I~~V~------------i~~~kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~-pL~V~wa~  486 (512)
                      .-+.+-+.|++||.|.+..            -.....+.--|.|.+..+|.+|++. +.-+.+. .+-|.|..
T Consensus        18 ~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mvGV~~~~   90 (100)
T PF05172_consen   18 ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMVGVKPCD   90 (100)
T ss_dssp             GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEEEEEE-H
T ss_pred             HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEEEEEEcH
Confidence            4567778899999997775            1123467899999999999999974 4444443 45577763

This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=81.95  E-value=2.7  Score=38.51  Aligned_cols=49  Identities=18%  Similarity=0.219  Sum_probs=33.1

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHc
Q psy3926         253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVL  305 (512)
Q Consensus       253 d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevL  305 (512)
                      .-..||||++..+.++|.+.|.+|-..-+|++.++    .-.=.+|..|.+.|
T Consensus        59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS----fYLQSKV~rAKErl  107 (127)
T PF03656_consen   59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGS----FYLQSKVFRAKERL  107 (127)
T ss_dssp             HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC----HHHHHHHHHHHHHH
Confidence            45789999999999999999999999999998863    12233455565554

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>KOG2202|consensus

Probab=81.27  E-value=1.1  Score=45.52  Aligned_cols=56  Identities=20%  Similarity=0.293  Sum_probs=41.4

Q ss_pred             HHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEe
Q psy3926         429 RESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNY  484 (512)
Q Consensus       429 e~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~w  484 (512)
                      |+..+++-.+||.|+.++||.+.    .|-++|.|...++|++|+..  +--+.+.||...+
T Consensus        83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~  144 (260)
T KOG2202|consen   83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL  144 (260)
T ss_pred             HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence            34444544599999999999754    79999999999999999974  3333445565543

>KOG0120|consensus

Probab=81.27  E-value=3.3  Score=45.98  Aligned_cols=57  Identities=19%  Similarity=0.356  Sum_probs=45.6

Q ss_pred             HHHHHHhhccCCeeEEEEccC--------CCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecC
Q psy3926         430 ESLTKIFSKYGKINILVISPK--------KRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN  486 (512)
Q Consensus       430 ~~L~~iFs~fG~I~~V~i~~~--------kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~  486 (512)
                      ++++.=+++||.|.+|.|...        --|+-||+|++.++|..|...  +..+.+..+...|..
T Consensus       424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd  490 (500)
T KOG0120|consen  424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD  490 (500)
T ss_pred             HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence            344444689999999999864        158999999999999999974  677788888877764

>KOG1548|consensus

Probab=80.30  E-value=3.2  Score=43.88  Aligned_cols=77  Identities=16%  Similarity=0.205  Sum_probs=54.8

Q ss_pred             CCCCcceeEEEeecCCCCCCCCC-------HHHHHHHhhccCCeeEEEEccCC-CceEEEEEcCHHHHHHHHHh--hcCC
Q psy3926         406 LNPENYRLRIRWKSSSTDTDVYT-------RESLTKIFSKYGKINILVISPKK-RGSALLEFEHADSARRAKLY--ELGL  475 (512)
Q Consensus       406 ~~~~~~~lkVKWk~~~~~~~~~t-------e~~L~~iFs~fG~I~~V~i~~~k-kg~A~V~F~s~~~A~~Ai~~--~~~~  475 (512)
                      ....+++|.|+---.+..- .-+       +++|++=.++||+|.+|+|+... .|-|.|.|.+.++|..+|+.  +.-+
T Consensus       261 k~r~~~tVi~kn~Ftp~~~-~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~f  339 (382)
T KOG1548|consen  261 KARADRTVILKNMFTPEDF-EKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWF  339 (382)
T ss_pred             cccCCcEEEeeecCCHHHh-ccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeee
Confidence            3457788998877665321 122       34555557899999999998644 69999999999999999985  3334


Q ss_pred             CCCceEEE
Q psy3926         476 PNCPLTLN  483 (512)
Q Consensus       476 ~~~pL~V~  483 (512)
                      .+..|+..
T Consensus       340 dgRql~A~  347 (382)
T KOG1548|consen  340 DGRQLTAS  347 (382)
T ss_pred             cceEEEEE
Confidence            44555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	512
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		6e-09
2ctq_A	112	Solution Structure Of J-Domain From Human Dnaj Subf		6e-09
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		9e-09
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		2e-08
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		4e-08
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		5e-08
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		7e-08
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		2e-07
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		2e-07
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-07
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		3e-07
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		7e-07
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		9e-07
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		9e-06
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		3e-05
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		4e-05
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		2e-04
2d9o_A	100	Solution Structure Of Rna Binding Domain In Hypothe		3e-04
2d9o_A	100	Solution Structure Of Rna Binding Domain In Hypothe		3e-04

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 247 ADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLL 306
           A +K+   Y +L +  D S+ +++ AYRK ALK HPDKNPD     E F  +S+A EVL 
Sbjct: 3   AMVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYEVLS 59
Query: 307 DKSARAAYDS 316
           D+  R  YD 
Sbjct: 60  DEKKRQIYDQ 69

>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C Menber 12 Length = 112

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y LL      S + I + ++ +AL+CHPDK+P++ KA+ETF  L KA E+L ++ +RA
Sbjct: 21  DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 313 AYDSVIRRK 321
            YD   R +
Sbjct: 81  RYDHWRRSQ 89

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIE-TFHLLSKAIEVLLDKSAR 311
           + Y +L +    S +DI+ AYRK AL+ HPDKNPD+K+  E  F L+S+A EVL D   R
Sbjct: 10  NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 312 AAYD 315
           + YD
Sbjct: 70  SLYD 73

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 255 YGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIE-TFHLLSKAIEVLLDKSARAA 313
           Y +L++    S  DI+ AYR+KAL+ HPDKNPD+K+  E  F  +++A EVL DK  R  
Sbjct: 5   YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 314 YDSVIR 319
           YD   R
Sbjct: 65  YDRYGR 70

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L ++    E++IR AY++ A+K HPD+N  DK+A   F  + +A EVL D   RA
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 313 AYD 315
           AYD
Sbjct: 64  AYD 66

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L ++    E++IR AY++ A+K HPD+N  DK+A   F  + +A EVL D   RA
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 313 AYD 315
           AYD
Sbjct: 64  AYD 66

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 254 LYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAA 313
           LY +L L  + +  DI+ +YRK ALK HPDKNPD+ +A + F  ++ A  +L D + R  
Sbjct: 19  LYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNI 78
Query: 314 YD 315
           YD
Sbjct: 79  YD 80

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 41/65 (63%)
Query: 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSA 310
           D + Y LL ++   S ++IR A++K ALK HPDKNP++  A   F  +++A EVL D+  
Sbjct: 20  DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL 79
Query: 311 RAAYD 315
           R  YD
Sbjct: 80  RKKYD 84

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIE-TFHLLSKAIEVLLDKSA 310
           +D Y +L++    S + I+ AYRK ALK HPDKNP++K+  E  F  +++A EVL D   
Sbjct: 9   VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68
Query: 311 RAAYD 315
           R  YD
Sbjct: 69  RDIYD 73

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L ++    E++IR AY++ A+K HPD+N  DK+A   F  + +A EVL D   RA
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 313 AYD 315
           AYD
Sbjct: 64  AYD 66

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L +  + S+++I+ AY + A K HPD N DD KA E F  L++A EVL D+  R 
Sbjct: 8   DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 313 AYDS 316
            YD+
Sbjct: 68  QYDA 71

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           + Y LL ++   S ++IR A++K ALK HPDKNP++  A   F  +++A EVL D+  R 
Sbjct: 3   NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 313 AYD 315
            YD
Sbjct: 63  KYD 65

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 247 ADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLL 306
           A +K+  LY LL ++   +EQ+++  YRK ALK HPDK   D    E F  +S+A E+L 
Sbjct: 3   AMVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILN 59
Query: 307 DKSARAAYD 315
           D   R  YD
Sbjct: 60  DPQKREIYD 68

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 249 IKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDK 308
           +K+   Y +L +  + ++++++ AYRK ALK HPDKNP++    E F  +S+A EVL D 
Sbjct: 3   VKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEG---EKFKQISQAYEVLSDA 59
Query: 309 SARAAYD 315
             R  YD
Sbjct: 60  KKRELYD 66

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSA 310
           D D Y +L ++   S+ DI+ AY+K A + HPDKN  D  A + F  +SKA E+L ++  
Sbjct: 16  DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEILSNEEK 74
Query: 311 RAAYD 315
           R  YD
Sbjct: 75  RTNYD 79

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L ++   S++D++ AYR+ ALK HPDKN     A E F  +  A  VL +   R 
Sbjct: 8   DYYEILGVSRGASDEDLKKAYRRLALKFHPDKN-HAPGATEAFKAIGTAYAVLSNPEKRK 66
Query: 313 AYD 315
            YD
Sbjct: 67  QYD 69

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y  L L    S+++I+ AYR++AL+ HPDKN  +  A E F  +++A +VL D   R 
Sbjct: 4   DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKRE 62
Query: 313 AYD 315
            +D
Sbjct: 63  IFD 65

>pdb|2D9O|A Chain A, Solution Structure Of Rna Binding Domain In Hypothetical Protein Flj10634 Length = 100

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 39 YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYL 97
          Y+++ L ++  KYG++  LV+S KK G+A++EF    +A  A   E+GL + PL +++L
Sbjct: 29 YSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWL 87

>pdb|2D9O|A Chain A, Solution Structure Of Rna Binding Domain In Hypothetical Protein Flj10634 Length = 100

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 427 YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYL 485
           Y+++ L ++  KYG++  LV+S KK G+A++EF    +A  A   E+GL + PL +++L
Sbjct: 29  YSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWL 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	512
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	2e-19
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	2e-19
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	4e-19
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	1e-18
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	2e-18
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	9e-18
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	3e-17
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	6e-17
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	8e-17
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	1e-16
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	1e-16
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	1e-16
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	1e-16
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	4e-16
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	2e-15
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	6e-15
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	2e-14
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	3e-14
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	3e-14
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	5e-14
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	8e-14
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	9e-14
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	6e-13
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	6e-13
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	8e-13
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	3e-12
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	1e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-10
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	1e-08
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	9e-08
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	2e-06
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	5e-06
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	6e-06
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	1e-05
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	1e-05
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	1e-05
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	8e-05
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	2e-05
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	2e-05
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	3e-05
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	5e-05
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	3e-05
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	1e-04
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	4e-05
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	4e-05
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	5e-05
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	5e-05
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	5e-05
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	1e-04
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	1e-04
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	1e-04
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	1e-04
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	1e-04
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	1e-04
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	2e-04
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	2e-04
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	2e-04
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	2e-04
2guz_A	71	Mitochondrial import inner membrane translocase su	3e-04
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	3e-04
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	6e-04
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	4e-04
2dis_A	109	Unnamed protein product; structural genomics, RRM	6e-04
2dis_A	109	Unnamed protein product; structural genomics, RRM	6e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-04
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	7e-04
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	7e-04
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	8e-04
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	8e-04
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	8e-04
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	8e-04

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 82.5 bits (203), Expect = 2e-19
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 15 NAKLNPENYRLRIRWKSSSTDTD--VYTRESLTKIFSKYGKINILVISPKKRGSALLEFE 72
          +        +L+++WK    D     Y+++ L ++  KYG++  LV+S KK G+A++EF 
Sbjct: 3  SGSSGQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFA 62

Query: 73 HADSARRAKLYELGLPNCPLTLNYLNP 99
             +A  A   E+GL + PL +++L  
Sbjct: 63 TVKAAELAVQNEVGLVDNPLKISWLEG 89

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 82.5 bits (203), Expect = 2e-19
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 403 NAKLNPENYRLRIRWKSSSTDTD--VYTRESLTKIFSKYGKINILVISPKKRGSALLEFE 460
           +        +L+++WK    D     Y+++ L ++  KYG++  LV+S KK G+A++EF 
Sbjct: 3   SGSSGQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFA 62

Query: 461 HADSARRAKLYELGLPNCPLTLNYLNP 487
              +A  A   E+GL + PL +++L  
Sbjct: 63  TVKAAELAVQNEVGLVDNPLKISWLEG 89

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 81.5 bits (202), Expect = 4e-19
 Identities = 28/63 (44%), Positives = 40/63 (63%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L ++    E++IR AY++ A+K HPD+N  DK+A   F  + +A EVL D   RA
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63

Query: 313 AYD 315
           AYD
Sbjct: 64  AYD 66

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 80.1 bits (198), Expect = 1e-18
 Identities = 27/63 (42%), Positives = 39/63 (61%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
            LY +L L  + +  DI+ +YRK ALK HPDKNPD+ +A + F  ++ A  +L D + R 
Sbjct: 18  SLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRN 77

Query: 313 AYD 315
            YD
Sbjct: 78  IYD 80

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 79.8 bits (197), Expect = 2e-18
 Identities = 28/63 (44%), Positives = 42/63 (66%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y LL      S + I + ++ +AL+CHPDK+P++ KA+ETF  L KA E+L ++ +RA
Sbjct: 21  DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80

Query: 313 AYD 315
            YD
Sbjct: 81  RYD 83

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 77.5 bits (191), Expect = 9e-18
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
            LY LL +    ++  I++AY ++    HPD+N    +A E F  +S+A  VL   + R 
Sbjct: 18  ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77

Query: 313 AYD 315
            YD
Sbjct: 78  KYD 80

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 76.2 bits (188), Expect = 3e-17
 Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIET-FHLLSKAIEVLLDKSAR 311
             Y +L++    S  DI+ AYR+KAL+ HPDKNPD+K+  E  F  +++A EVL DK  R
Sbjct: 3   SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62

Query: 312 AAYD 315
             YD
Sbjct: 63  EIYD 66

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 78.8 bits (194), Expect = 6e-17
 Identities = 27/63 (42%), Positives = 40/63 (63%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           + Y LL ++   S ++IR A++K ALK HPDKNP++  A   F  +++A EVL D+  R 
Sbjct: 3   NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62

Query: 313 AYD 315
            YD
Sbjct: 63  KYD 65

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 74.2 bits (183), Expect = 8e-17
 Identities = 28/63 (44%), Positives = 39/63 (61%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L +  + S+++I+ AY + A K HPD N DD KA E F  L++A EVL D+  R 
Sbjct: 8   DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67

Query: 313 AYD 315
            YD
Sbjct: 68  QYD 70

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 76.4 bits (188), Expect = 1e-16
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD------KKAIETFHLLSKAIEVLL 306
           D Y +L      +  D++  Y+K  L  HPDK   D      ++ ++ F  + +A ++L 
Sbjct: 11  DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70

Query: 307 DKSARAAYDS 316
           ++  +  YD 
Sbjct: 71  NEETKREYDL 80

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIET-FHLLSKAIEVLLDKSAR 311
           D Y +L++    S + I+ AYRK ALK HPDKNP++K+  E  F  +++A EVL D   R
Sbjct: 10  DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69

Query: 312 AAYD 315
             YD
Sbjct: 70  DIYD 73

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 74.3 bits (183), Expect = 1e-16
 Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 243 SSIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAI 302
           S+ M   K+  LY LL ++   +EQ+++  YRK ALK HPDK   D    E F  +S+A 
Sbjct: 1   SNAMV--KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDT---EKFKEISEAF 55

Query: 303 EVLLDKSARAAYD 315
           E+L D   R  YD
Sbjct: 56  EILNDPQKREIYD 68

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 74.3 bits (183), Expect = 1e-16
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIET-FHLLSKAIEVLLDKSAR 311
           + Y +L +    S +DI+ AYRK AL+ HPDKNPD+K+  E  F L+S+A EVL D   R
Sbjct: 10  NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69

Query: 312 AAYD 315
           + YD
Sbjct: 70  SLYD 73

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 72.2 bits (178), Expect = 4e-16
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y  L L    S+++I+ AYR++AL+ HPDKN  +  A E F  +++A +VL D   R 
Sbjct: 4   DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKRE 62

Query: 313 AYD 315
            +D
Sbjct: 63  IFD 65

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 70.4 bits (173), Expect = 2e-15
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
             Y +L +    SE+ I+ A+ K A+K HPDKN     A   F  +++A E L D + R 
Sbjct: 8   SYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRK 66

Query: 313 AYD 315
            YD
Sbjct: 67  EYD 69

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 68.8 bits (169), Expect = 6e-15
 Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 5/73 (6%)

Query: 243 SSIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAI 302
           S+ M   K+   Y +L +  D S+ +++ AYRK ALK HPDKNPD     E F  +S+A 
Sbjct: 1   SNAMV--KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAY 55

Query: 303 EVLLDKSARAAYD 315
           EVL D+  R  YD
Sbjct: 56  EVLSDEKKRQIYD 68

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L ++   S++D++ AYR+ ALK HPDKN     A E F  +  A  VL +   R 
Sbjct: 8   DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLSNPEKRK 66

Query: 313 AYD 315
            YD
Sbjct: 67  QYD 69

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 67.4 bits (165), Expect = 3e-14
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKK-AIETFHLLSKAIEVLLDKSAR 311
           ++  ++E      E + +   R+  LK HPDKNP++   A E F  L   I  L     +
Sbjct: 17  EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQ 73

Query: 312 AAYD 315
           A  D
Sbjct: 74  AFLD 77

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 67.0 bits (164), Expect = 3e-14
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L ++   S+ DI+ AY+K A + HPDKN  D  A + F  +SKA E+L ++  R 
Sbjct: 18  DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEILSNEEKRT 76

Query: 313 AYD 315
            YD
Sbjct: 77  NYD 79

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 73.6 bits (180), Expect = 5e-14
 Identities = 29/74 (39%), Positives = 43/74 (58%)

Query: 242 LSSIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKA 301
            S  +    D + Y LL ++   S ++IR A++K ALK HPDKNP++  A   F  +++A
Sbjct: 11  SSGHIEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRA 70

Query: 302 IEVLLDKSARAAYD 315
            EVL D+  R  YD
Sbjct: 71  YEVLKDEDLRKKYD 84

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 66.7 bits (163), Expect = 8e-14
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 253 DLYGLLELTID-CSEQDIRSAYRKKALKCHPDKNPDDKK---AIETFHLLSKAIEVLLDK 308
           + Y +LE+  +   +Q +  AYR  A K HPD+  + ++   A E F +++ A E L D 
Sbjct: 16  NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDD 75

Query: 309 SARAAYD 315
            A+  YD
Sbjct: 76  EAKTNYD 82

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 65.9 bits (161), Expect = 9e-14
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 246 MADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD------KKAIETFHLLS 299
           +      D Y +L      +  D++  Y+K  L  HPDK   D      ++ ++ F  + 
Sbjct: 10  LEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEID 69

Query: 300 KAIEVLLDKSARAAYD 315
           +A ++L ++  +  YD
Sbjct: 70  QAWKILGNEETKKKYD 85

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 66.1 bits (161), Expect = 6e-13
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 253 DLYGLLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSA 310
            L  LL L      +   +R AY KK  + HPDK  D++K       ++   + + D   
Sbjct: 12  QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEK----MKKMNTLYKKMEDGVK 67

Query: 311 RAAYD 315
            A   
Sbjct: 68  YAHQP 72

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 68.8 bits (169), Expect = 6e-13
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L +      + I++AYR+ A K HPD +  +  A   F  L++A EVL D+  RA
Sbjct: 29  DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSK-ENDAEAKFKDLAEAWEVLKDEQRRA 87

Query: 313 AYD 315
            YD
Sbjct: 88  EYD 90

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 63.2 bits (154), Expect = 8e-13
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D + +L +    S  ++  AYRK A+  HPDK      + + F  +  A   LL      
Sbjct: 28  DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTALLKNIKSG 86

Query: 313 AYD 315
              
Sbjct: 87  PSS 89

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 62.1 bits (151), Expect = 3e-12
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 253 DLYGLLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSA 310
            L  LL L      +   +R AY KK  + HPDK  D++K       ++   + + D   
Sbjct: 9   QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEK----MKKMNTLYKKMEDGVK 64

Query: 311 RAAYD 315
            A   
Sbjct: 65  YAHQP 69

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD---KKAIETFHLLSKAIEVLL 306
           +  D Y +L +  +  +Q+I  AYRK AL+ HPD   ++   KKA + F  ++ A EVL 
Sbjct: 380 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLS 439

Query: 307 DKSARAAYDS 316
           D   R  +D 
Sbjct: 440 DPEMRKKFDD 449

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 59.2 bits (143), Expect = 1e-10
 Identities = 28/155 (18%), Positives = 59/155 (38%), Gaps = 15/155 (9%)

Query: 252 LDLYGLLEL--TIDCSEQDIRSAYRKKALKCHPDKNPDD-----KKAIETFHLLSKAIEV 304
           +D + L  L        Q +   ++    + HPDK           A++    +++A + 
Sbjct: 1   MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60

Query: 305 LLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEE 364
           L     RA Y   +   +    +++  D       E LE RE+  E E+ K    +++  
Sbjct: 61  LRHPLMRAEYLLSLHGFDLASEQHTVRDT--AFLMEQLELREELDEIEQAK----DEARL 114

Query: 365 EILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKEL 399
           E   + + ++       + E++    E  +AA + 
Sbjct: 115 ESFIKRVKKMFDTRHQLMVEQLD--NETWDAAADT 147

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 5e-10
 Identities = 79/529 (14%), Positives = 151/529 (28%), Gaps = 165/529 (31%)

Query: 14  LNAKLNPENY-----RLRIRWKSSSTDTDVY--TRESL---TKIFSKYGKINILVISPKK 63
           +   L   NY      ++   +  S  T +Y   R+ L    ++F+KY   N+       
Sbjct: 83  VEEVLRI-NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY---NV------S 132

Query: 64  RGSALLEFEHADSARRAKLYEL---------GLPNC---PLTLNYLNPDVEREESRK-QP 110
           R    L+        R  L EL         G+       + L     DV      + + 
Sbjct: 133 RLQPYLKL-------RQALLELRPAKNVLIDGVLGSGKTWVAL-----DVCLSYKVQCKM 180

Query: 111 KNPVFSNIDFSGPRDSDSKNVESSNGSDSDSTPNLFPSANKSSNIFPSADKSSNLFPTAD 170
              +F  ++     +S    +E          PN    ++ SSNI         +     
Sbjct: 181 DFKIFW-LNL-KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI------KLRIHSIQA 232

Query: 171 KSSHLFPIADKSSNLFPSA----D--KSSNI---FSSSSK----PRNVFPSGLFPSANVS 217
           +   L       S  + +        +++     F+ S K     R            V+
Sbjct: 233 ELRRLL-----KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF---------KQVT 278

Query: 218 SNIFASSDRTLPEPHISWSFPAIPLSSIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKA 277
             + A++   +   H S +              D ++  LL   +DC  QD+     ++ 
Sbjct: 279 DFLSAATTTHISLDHHSMTL-----------TPD-EVKSLLLKYLDCRPQDL----PREV 322

Query: 278 LKCHP-------DKNPDDKKAIETF---------HLLSKAIEVLLDKSARAAYD--SVIR 319
           L  +P       +   D     + +          ++  ++ VL     R  +D  SV  
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 320 RKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEIDRLRKEGS 379
                 I    L         D+ + +            VNK  +  L   +++  KE +
Sbjct: 383 --PSAHIPTILL----SLIWFDVIKSDVMVV--------VNKLHKYSL---VEKQPKEST 425

Query: 380 IRLQEEIKLMTEELNAAKELSELNAKLNPENYRLRIRWKS---SSTDTDVYTRESLTKIF 436
           I +     +  E     +    L+  +  ++Y +   + S        D Y        +
Sbjct: 426 ISIPS---IYLELKVKLENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQY-------FY 474

Query: 437 SKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYL 485
           S  G                    H  +    +   L      L   +L
Sbjct: 475 SHIGH-------------------HLKNIEHPERMTL-FRMVFLDFRFL 503

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 47/260 (18%)

Query: 249 IKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDK 308
           + + D   + ++         +S   K+ +  H   + D    +     L      LL K
Sbjct: 30  VDNFDCKDVQDMP--------KSILSKEEID-HIIMSKDA---VSGTLRL---FWTLLSK 74

Query: 309 SARAAY---DSVIRR-----KEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVN 360
                    + V+R         +K    +     + + E  +R     +N+ +  Y V+
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN--DNQVFAKYNVS 132

Query: 361 KSEEEI-LQQEIDRLRKEGSIRLQEEI---K--LMTEELNAAKELSELNAKLNPENYRLR 414
           + +  + L+Q +  LR   ++ +   +   K  +  +   + K   +++ K         
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK--------- 183

Query: 415 IRW-KSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYEL 473
           I W    + ++     E L K+  +               +  L      +  R  L   
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDP--NWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 474 GLPNCPLTLNYLNPDVEREE 493
              NC L L     +V+  +
Sbjct: 242 PYENCLLVLL----NVQNAK 257

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 51.1 bits (122), Expect = 1e-08
 Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 245 IMADIKDLDLYGLLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAI 302
           +++      L  LL+L          ++ AY++++L  HPDK             L+   
Sbjct: 4   VLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH----ALMQELNSLW 59

Query: 303 EVLLDKSARAAYD 315
                +      +
Sbjct: 60  GTFKTEVYNLRMN 72

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 51.1 bits (122), Expect = 9e-08
 Identities = 22/142 (15%), Positives = 55/142 (38%), Gaps = 19/142 (13%)

Query: 263 DCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR-- 320
              +  +R  YR+   + HPD         E    L++A   L D   R+ Y   + R  
Sbjct: 29  TIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKLLRNI 85

Query: 321 ---KEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEIDRLRKE 377
              +E+     +  D       + L+  ++ ++ +       +++  ++L+++     ++
Sbjct: 86  DLTQEQTSNEVTTSDPQ--LLLKVLDIHDELSQMD-------DEAGVKLLEKQNKERIQD 136

Query: 378 GSIRLQEEIKLMTEELNAAKEL 399
              +L +      ++  AA +L
Sbjct: 137 IEAQLGQCYN--DKDYAAAVKL 156

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 26/157 (16%), Positives = 60/157 (38%), Gaps = 18/157 (11%)

Query: 250 KDLDLYGLLEL--TIDCSEQDIRSAYRKKALKCHPDKNPDD-----KKAIETFHLLSKAI 302
              D + L++   +       ++  Y++     HPD            + +   L++ A 
Sbjct: 41  PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAY 100

Query: 303 EVLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKS 362
           + LL   +R  Y   +   E  +  + ++D       E +E  EK AE E       +++
Sbjct: 101 KTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQF--LIEIMEINEKLAEAE-------SEA 151

Query: 363 EEEILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKEL 399
             + ++  +   +KE +  +    +   ++   AKE+
Sbjct: 152 AMKEIESIVKAKQKEFTDNVSSAFE--QDDFEEAKEI 186

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 46.4 bits (109), Expect = 5e-06
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 255 YGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD---KKAIETFHLLSKAIEVLLDKSAR 311
           +  + +    + + ++  YRK  L  HPDK       + A   F  L+ A     ++  +
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 179

Query: 312 AAY 314
             Y
Sbjct: 180 PLY 182

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 45.9 bits (108), Expect = 6e-06
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 317 VIRR-KEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGY--------KVNKSEEEIL 367
            IR+ +EE + R  +LDA  K  +++   + K+   E  +            N+  ++  
Sbjct: 86  SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 145

Query: 368 QQEID 372
            Q+ D
Sbjct: 146 YQQPD 150

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 124

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 40  TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLP----NCPLTLN 95
           T + L  + +  GK+  +VI  +    A++EFE    A++AK    G       C L + 
Sbjct: 38  TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97

Query: 96  YLNPD 100
           Y  P 
Sbjct: 98  YARPT 102

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 124

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 428 TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLP----NCPLTLN 483
           T + L  + +  GK+  +VI  +    A++EFE    A++AK    G       C L + 
Sbjct: 38  TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97

Query: 484 YLNPD 488
           Y  P 
Sbjct: 98  YARPT 102

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A Length = 205

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 2/123 (1%)

Query: 35  DTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLP--NCPL 92
           D      + +  +F  YG +  +     K G+A++E     +  RA  +          +
Sbjct: 13  DQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKM 72

Query: 93  TLNYLNPDVEREESRKQPKNPVFSNIDFSGPRDSDSKNVESSNGSDSDSTPNLFPSANKS 152
            +                ++   S  DFS  R++     E +  +      N+    N  
Sbjct: 73  NVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAP 132

Query: 153 SNI 155
             +
Sbjct: 133 LEV 135

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A Length = 205

 Score = 42.8 bits (100), Expect = 8e-05
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 2/92 (2%)

Query: 423 DTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLP--NCPL 480
           D      + +  +F  YG +  +     K G+A++E     +  RA  +          +
Sbjct: 13  DQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKM 72

Query: 481 TLNYLNPDVEREESRKQPKNPVFSNIDFSGPR 512
            +                ++   S  DFS  R
Sbjct: 73  NVCVSKQPAIMPGQSYGLEDGSCSYKDFSESR 104

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_A 2f9j_A 2fho_B Length = 115

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 40  TRESLTKIFSKYGKIN--ILVISPKKRGSALLEFEHADSARRA--KLYELGLPNCPLTLN 95
           T E +  IF KYG I    +  +P+ RG+A + +E    A+ A   L    + N  L + 
Sbjct: 21  TAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80

Query: 96  YLNPDVEREESRKQPK 111
           Y N +   ++   + K
Sbjct: 81  YYNANRAFQKMDTKKK 96

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_A 2f9j_A 2fho_B Length = 115

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 428 TRESLTKIFSKYGKIN--ILVISPKKRGSALLEFEHADSARRA--KLYELGLPNCPLTLN 483
           T E +  IF KYG I    +  +P+ RG+A + +E    A+ A   L    + N  L + 
Sbjct: 21  TAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80

Query: 484 YLNPDVEREESRKQPK 499
           Y N +   ++   + K
Sbjct: 81  YYNANRAFQKMDTKKK 96

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Length = 229

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 5/101 (4%)

Query: 35  DTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRA--KLYELGLPNCPL 92
           + +  T +SL  +F  YG +  + I   K+ +AL++    + A+ A   L    L   P+
Sbjct: 43  NPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPI 102

Query: 93  TLNYL---NPDVEREESRKQPKNPVFSNIDFSGPRDSDSKN 130
            +      N  + RE    Q     + N      +   SKN
Sbjct: 103 RITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKN 143

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Length = 229

 Score = 43.8 bits (103), Expect = 5e-05
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 423 DTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRA--KLYELGLPNCPL 480
           + +  T +SL  +F  YG +  + I   K+ +AL++    + A+ A   L    L   P+
Sbjct: 43  NPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPI 102

Query: 481 TLNYL---NPDVEREESRKQPKNPVFSN 505
            +      N  + RE    Q     + N
Sbjct: 103 RITLSKHQNVQLPREGQEDQGLTKDYGN 130

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A Length = 164

 Score = 43.2 bits (101), Expect = 3e-05
 Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 28/122 (22%)

Query: 40  TRESLTKIFSKYGKINILVISPKKRG-SALLEFEHADSARRAKLYELGLP--NCPLTLNY 96
           T + L +IFSK+G +  ++   K     ALL++    SA+ AKL   G    N   TL  
Sbjct: 59  TLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL-- 116

Query: 97  LNPDVEREESRKQPKNPVFSNIDFSGPRDSDSKNVESSNGSDSDSTPNLFPSANKSSNIF 156
                                IDFS        NV+ +N    D T    PS +   ++ 
Sbjct: 117 --------------------RIDFSKLTS---LNVKYNNDKSRDYTRPDLPSGDSQPSLD 153

Query: 157 PS 158
            +
Sbjct: 154 QT 155

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A Length = 164

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 428 TRESLTKIFSKYGKINILVISPKKRG-SALLEFEHADSARRAKLYELGLP----NCPLTL 482
           T + L +IFSK+G +  ++   K     ALL++    SA+ AKL   G       C L +
Sbjct: 59  TLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118

Query: 483 NYLNPD 488
           ++    
Sbjct: 119 DFSKLT 124

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 17/137 (12%), Positives = 42/137 (30%), Gaps = 21/137 (15%)

Query: 1   MTEELNAAKELSELN-AKLNPENYRLRIRWKSSSTDTDVY--------TRESLTKIFSKY 51
           +     A   ++  + ++L      L ++     TD  +         T++   ++   +
Sbjct: 64  LLNGEQAEAAINAFHQSRLR--ERELSVQL--QPTDALLCVANLPPSLTQQQFEELVRPF 119

Query: 52  GKINILVISP-----KKRGSALLEFEHADSARRA--KLYELGLPNCPLTLNYLNPDVERE 104
           G +    +       + +G    E+   DSA RA   L    L    L +++ +      
Sbjct: 120 GSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP 179

Query: 105 ESRKQPKNPVFSNIDFS 121
                 +      +   
Sbjct: 180 ALLHS-RCLCVDRLPPG 195

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 17/137 (12%), Positives = 42/137 (30%), Gaps = 21/137 (15%)

Query: 389 MTEELNAAKELSELN-AKLNPENYRLRIRWKSSSTDTDVY--------TRESLTKIFSKY 439
           +     A   ++  + ++L      L ++     TD  +         T++   ++   +
Sbjct: 64  LLNGEQAEAAINAFHQSRLR--ERELSVQL--QPTDALLCVANLPPSLTQQQFEELVRPF 119

Query: 440 GKINILVISP-----KKRGSALLEFEHADSARRA--KLYELGLPNCPLTLNYLNPDVERE 492
           G +    +       + +G    E+   DSA RA   L    L    L +++ +      
Sbjct: 120 GSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP 179

Query: 493 ESRKQPKNPVFSNIDFS 509
                 +      +   
Sbjct: 180 ALLHS-RCLCVDRLPPG 195

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 97

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 40 TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAK 81
          +  +L + F ++G I  +    K    A +++E  D+A+ A 
Sbjct: 30 SLAALAREFDRFGSIRTIDH-VKGDSFAYIQYESLDAAQAAC 70

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 97

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 428 TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAK 469
           +  +L + F ++G I  +    K    A +++E  D+A+ A 
Sbjct: 30  SLAALAREFDRFGSIRTIDH-VKGDSFAYIQYESLDAAQAAC 70

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 5/115 (4%)

Query: 35  DTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRA--KLYELGLPNCPL 92
           + +  T +SL  +F  YG +  + I   K+ +AL++    + A+ A   L    L   P+
Sbjct: 12  NPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPI 71

Query: 93  TLNYLNPDVEREESRKQPKNPVFSNIDFSGPRDSDSKNVESSNGSDSDS-TPNLF 146
            +        +     Q    +    D+        K   S N  +    +  L 
Sbjct: 72  RITLSKHQNVQLPREGQEDQGLTK--DYGNSPLHRFKKPGSKNFQNIFPPSATLH 124

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 423 DTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRA 468
           + +  T +SL  +F  YG +  + I   K+ +AL++    + A+ A
Sbjct: 12  NPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLA 57

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A Length = 150

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 5/128 (3%)

Query: 341 DLERREKEAENERYKGYKVNKSEEEILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKELS 400
            L    K  + E         + E++ +Q  +    +G     +  K  T    +     
Sbjct: 4   KLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHH 63

Query: 401 ELNAKLNPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFE 460
            ++    P + ++ +    ++       +  L + F  YG +  + ++    G A +EFE
Sbjct: 64  HMHRDSCPLDCKVYVGNLGNNG-----NKTELERAFGYYGPLRSVWVARNPPGFAFVEFE 118

Query: 461 HADSARRA 468
               A  A
Sbjct: 119 DPRDAADA 126

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A Length = 130

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 40  TRESLTKIFSKYGKINILVISPKK-RGSALLEFEHADSARRAKLYELGLP----NCPLTL 94
           T + L +IFSK+G +  ++   K  +  ALL++    SA+ AKL   G       C L +
Sbjct: 41  TLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100

Query: 95  NYLNPD 100
           ++    
Sbjct: 101 DFSKLT 106

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A Length = 130

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 428 TRESLTKIFSKYGKINILVISPKK-RGSALLEFEHADSARRAKLYELGLP----NCPLTL 482
           T + L +IFSK+G +  ++   K  +  ALL++    SA+ AKL   G       C L +
Sbjct: 41  TLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100

Query: 483 NYLNPD 488
           ++    
Sbjct: 101 DFSKLT 106

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 40  TRESLTKIFSKYGKIN--ILVISPKKRGSALLEFEHADSARRA--KLYELGLPNCPLTLN 95
             E L  +  +YG +     V +  +     + +   D AR+A  KL    L N  L + 
Sbjct: 28  QWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87

Query: 96  YLNPDVERE 104
           Y+  ++  +
Sbjct: 88  YIPDEMAAQ 96

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 428 TRESLTKIFSKYGKIN--ILVISPKKRGSALLEFEHADSARRA--KLYELGLPNCPLTLN 483
             E L  +  +YG +     V +  +     + +   D AR+A  KL    L N  L + 
Sbjct: 28  QWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87

Query: 484 YLNPDVERE 492
           Y+  ++  +
Sbjct: 88  YIPDEMAAQ 96

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 Length = 104

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 8/78 (10%)

Query: 40  TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRA----KLYELGLPNCPLTLN 95
               L +   K+G I  +++ P KR  AL+EFE+ DSA+          + +       N
Sbjct: 28  VEADLVEALEKFGTICYVMMMPFKR-QALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86

Query: 96  YLNPDVEREESRKQPKNP 113
           Y      +  +R     P
Sbjct: 87  YSTS---KRITRPGNSGP 101

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 Length = 104

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 8/78 (10%)

Query: 428 TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRA----KLYELGLPNCPLTLN 483
               L +   K+G I  +++ P KR  AL+EFE+ DSA+          + +       N
Sbjct: 28  VEADLVEALEKFGTICYVMMMPFKR-QALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86

Query: 484 YLNPDVEREESRKQPKNP 501
           Y      +  +R     P
Sbjct: 87  YSTS---KRITRPGNSGP 101

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 40  TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRA-------KLYELGLPNCPL 92
           +R  L  +  K G ++ L++ P K   +   +   + ++RA       ++ +       L
Sbjct: 40  SRNQLLPVLEKCGLVDALLMPPNK-PYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98

Query: 93  TLNYLNP 99
            LN++  
Sbjct: 99  YLNFVEK 105

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 428 TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRA-------KLYELGLPNCPL 480
           +R  L  +  K G ++ L++ P K   +   +   + ++RA       ++ +       L
Sbjct: 40  SRNQLLPVLEKCGLVDALLMPPNK-PYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98

Query: 481 TLNYLNP 487
            LN++  
Sbjct: 99  YLNFVEK 105

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 265 SEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSAR 311
           +++ ++  +RK  L  HPDK      A +    +++A + L  +   
Sbjct: 28  TKKKLKEVHRKIMLANHPDKGGSPFLATK----INEAKDFLEKRGIS 70

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} Length = 101

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 40  TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYEL---GLPNCPLTLNY 96
            +  L + FS YG +  + I+    G A +EFE    A  A +  L    +    + +  
Sbjct: 13  GKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDA-VRGLDGKVICGSRVRVEL 71

Query: 97  LNPDVEREESRKQPKNPVFSNIDFSGPRD 125
                 R    + P       + F+GP +
Sbjct: 72  STGMPRRSRFDRPPARRKLLEVLFNGPLE 100

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} Length = 101

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 4/88 (4%)

Query: 428 TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYEL---GLPNCPLTLNY 484
            +  L + FS YG +  + I+    G A +EFE    A  A +  L    +    + +  
Sbjct: 13  GKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDA-VRGLDGKVICGSRVRVEL 71

Query: 485 LNPDVEREESRKQPKNPVFSNIDFSGPR 512
                 R    + P       + F+GP 
Sbjct: 72  STGMPRRSRFDRPPARRKLLEVLFNGPL 99

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 258 LELTIDCSEQDIRSAYRKKALKCHPDKNPDDKK---AIETFHLLSKAIEVLLDK 308
           + +    + + ++  YRK  L  HP K         A   F  L+ A     ++
Sbjct: 39  VGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFENQ 92

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 11/81 (13%)

Query: 40  TRESLTKIFSKYGKINILVI-------SPKKRGSALLEFEHADSARRAKLY----ELGLP 88
            RE + +  +K  +  + VI         K RG A +E+E   +A  A+       + L 
Sbjct: 21  KREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW 80

Query: 89  NCPLTLNYLNPDVEREESRKQ 109
              + +++  P+++ +E   +
Sbjct: 81  GHQIAVDWAEPEIDVDEDVME 101

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 11/81 (13%)

Query: 428 TRESLTKIFSKYGKINILVI-------SPKKRGSALLEFEHADSARRAKLY----ELGLP 476
            RE + +  +K  +  + VI         K RG A +E+E   +A  A+       + L 
Sbjct: 21  KREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW 80

Query: 477 NCPLTLNYLNPDVEREESRKQ 497
              + +++  P+++ +E   +
Sbjct: 81  GHQIAVDWAEPEIDVDEDVME 101

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 10/97 (10%)

Query: 319  RRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEIDRLRKEG 378
             +   ++I  S      +   E L   E+EA+N          +    LQ+EI +LRKE 
Sbjct: 949  EKMNNLEITYSTETEKLRSDVERLRMSEEEAKNA--------TNRVLSLQEEIAKLRKEL 1000

Query: 379  SIRLQEEIKLMTEELNAAK-ELSELNAKLNPENYRLR 414
              + Q E K + E  +  K E  +L ++L  +N  L+
Sbjct: 1001 H-QTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLK 1036

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens} Length = 81

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 40 TRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRA 80
           +  + KIFSK+GKI          K +G   LE+     A  A
Sbjct: 20 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDA 63

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens} Length = 81

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 428 TRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRA 468
            +  + KIFSK+GKI          K +G   LE+     A  A
Sbjct: 20  LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDA 63

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 17/131 (12%), Positives = 40/131 (30%), Gaps = 19/131 (14%)

Query: 7   AAKELSELNAKLNPENYRLRIRWKSSST------DTDVYTRESLTKIFSKYGKINILVIS 60
           A   +++ +  +      + +   +  T           T+ ++  +      + + +  
Sbjct: 94  ALAAITKTHKVVG--QNEIIVSHLTECTLWMTNFPPSY-TQRNIRDLLQDINVVALSIRL 150

Query: 61  PKK-----RGSALLEFEHADSARRA--KLYELGLPNCPLTLNYLNPD--VEREESRKQPK 111
           P       R  A ++    + AR    KL  L +    L     NP    +R +S     
Sbjct: 151 PSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEG 210

Query: 112 NPVF-SNIDFS 121
             +   N+   
Sbjct: 211 REIMIRNLSTE 221

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 17/131 (12%), Positives = 40/131 (30%), Gaps = 19/131 (14%)

Query: 395 AAKELSELNAKLNPENYRLRIRWKSSST------DTDVYTRESLTKIFSKYGKINILVIS 448
           A   +++ +  +      + +   +  T           T+ ++  +      + + +  
Sbjct: 94  ALAAITKTHKVVG--QNEIIVSHLTECTLWMTNFPPSY-TQRNIRDLLQDINVVALSIRL 150

Query: 449 PKK-----RGSALLEFEHADSARRA--KLYELGLPNCPLTLNYLNPD--VEREESRKQPK 499
           P       R  A ++    + AR    KL  L +    L     NP    +R +S     
Sbjct: 151 PSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEG 210

Query: 500 NPVF-SNIDFS 509
             +   N+   
Sbjct: 211 REIMIRNLSTE 221

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Length = 282

 Score = 40.2 bits (93), Expect = 8e-04
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 41  RESLTKIFSKYGKI-NILVI-SPKKRGSALLEFEHADSARRAK--LYELGLPNCPLTLNY 96
           ++SL  IFS++G+I +ILV  S K RG A + F+   SA  A   +      + P+ + Y
Sbjct: 27  KKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 86

Query: 97  LNPDVEREESRKQ 109
              D +     K 
Sbjct: 87  AKTDSDIIAKMKG 99

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Length = 282

 Score = 40.2 bits (93), Expect = 8e-04
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 429 RESLTKIFSKYGKI-NILVI-SPKKRGSALLEFEHADSARRAK--LYELGLPNCPLTLNY 484
           ++SL  IFS++G+I +ILV  S K RG A + F+   SA  A   +      + P+ + Y
Sbjct: 27  KKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 86

Query: 485 LNPDVEREESRKQ 497
              D +     K 
Sbjct: 87  AKTDSDIIAKMKG 99

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	512
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.76
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.75
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.74
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.74
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.74
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.74
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.73
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.73
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.73
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.73
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.72
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.71
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.7
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.7
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.69
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.69
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.68
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.67
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.66
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.65
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.64
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.64
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	99.62
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	99.59
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.58
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.54
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.54
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.54
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.52
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.51
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.5
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.49
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.49
2guz_A	71	Mitochondrial import inner membrane translocase su	99.43
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.41
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.39
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.37
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.36
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.34
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.34
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.33
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.32
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.3
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.29
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.27
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.2
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.18
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.17
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.08
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.08
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.07
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.02
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	99.02
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	98.99
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	98.99
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	98.98
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	98.96
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	98.95
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	98.95
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	98.95
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	98.94
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	98.94
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	98.93
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	98.93
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	98.92
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	98.91
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	98.9
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	98.9
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	98.89
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	98.89
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	98.89
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	98.89
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	98.88
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	98.88
1x5p_A	97	Negative elongation factor E; structure genomics,	98.88
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	98.87
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	98.86
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	98.86
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	98.86
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	98.86
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	98.86
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	98.85
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	98.85
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	98.85
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	98.85
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	98.84
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	98.84
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	98.84
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	98.84
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.84
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	98.84
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	98.84
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	98.83
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	98.83
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	98.83
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	98.83
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	98.83
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	98.82
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	98.82
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	98.82
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	98.81
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	98.81
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	98.81
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	98.81
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	98.81
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	98.8
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	98.8
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	98.8
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	98.8
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	98.79
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	98.79
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	98.79
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	98.79
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	98.78
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	98.78
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	98.78
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	98.78
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	98.78
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	98.78
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	98.78
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	98.77
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	98.77
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	98.77
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	98.77
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	98.77
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	98.76
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	98.76
2dis_A	109	Unnamed protein product; structural genomics, RRM	98.75
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	98.75
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	98.75
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	98.75
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	98.75
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.75
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	98.74
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	98.74
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	98.74
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	98.74
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	98.73
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	98.73
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	98.73
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.72
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	98.72
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	98.72
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	98.72
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	98.71
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	98.71
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	98.71
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	98.7
2div_A	99	TRNA selenocysteine associated protein; structural	98.7
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	98.7
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	98.7
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	98.7
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	98.69
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	98.69
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	98.69
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	98.69
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	98.68
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	98.68
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	98.68
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	98.68
1x5o_A	114	RNA binding motif, single-stranded interacting pro	98.68
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	98.67
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	98.67
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	98.67
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	98.67
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	98.67
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	98.66
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	98.66
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	98.66
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	98.65
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	98.64
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	98.63
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	98.63
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	98.63
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	98.63
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	98.63
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	98.63
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	98.62
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	98.62
1x4e_A	85	RNA binding motif, single-stranded interacting pro	98.61
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	98.6
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	98.6
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	98.6
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	98.59
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	98.59
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	98.57
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	98.56
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	98.55
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	98.54
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	98.54
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	98.52
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	98.52
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	98.52
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	98.51
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	98.51
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	98.5
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	98.49
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	98.49
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	98.49
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	98.49
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	98.49
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	98.49
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	98.48
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	98.48
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	98.47
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	98.47
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	98.47
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	98.46
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	98.45
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	98.45
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	98.44
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	98.44
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	98.44
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	98.44
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	98.44
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	98.44
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	98.43
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	98.43
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.42
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	98.42
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	98.42
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	97.8
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	98.42
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	98.42
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	98.42
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	98.42
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	98.41
1x5p_A	97	Negative elongation factor E; structure genomics,	98.4
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	98.4
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	98.39
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	98.39
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	98.39
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	98.39
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	98.39
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	98.38
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	98.38
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	98.38
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	98.37
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	98.36
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	98.36
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	98.36
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	98.36
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	98.36
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	98.36
2guz_B	65	Mitochondrial import inner membrane translocase su	98.36
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	98.35
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	98.35
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	98.35
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	98.33
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	98.33
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	98.33
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	98.33
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	98.32
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	98.32
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	98.31
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	98.31
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	98.31
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	98.31
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	98.3
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	98.3
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	98.3
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	98.3
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	98.3
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	98.3
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	98.29
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	98.29
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	98.29
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	98.29
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	98.29
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	98.29
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	98.28
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	98.28
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	98.28
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	98.28
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	98.28
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	98.28
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	98.27
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	98.27
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	98.27
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	98.27
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	98.26
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	98.26
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	98.26
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.26
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	98.25
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	98.25
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	98.25
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	98.24
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	98.24
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	98.23
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	98.23
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	98.23
2dis_A	109	Unnamed protein product; structural genomics, RRM	98.23
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	98.23
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	98.22
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	98.22
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	98.22
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	98.21
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	98.21
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	98.2
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	98.2
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	98.2
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	98.2
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	98.2
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	98.19
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	98.19
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	98.19
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	98.19
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	98.19
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	98.18
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	98.18
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	98.18
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	98.18
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	98.17
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	98.17
2div_A	99	TRNA selenocysteine associated protein; structural	98.17
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	98.17
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	98.16
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	98.16
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.15
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	98.15
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	98.15
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	98.15
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	98.15
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	98.15
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	98.14
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	98.14
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	98.14
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	98.14
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	98.14
1x5o_A	114	RNA binding motif, single-stranded interacting pro	98.12
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	98.12
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	98.12
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	98.11
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	98.11
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	98.11
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	98.1
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	98.1
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	98.09
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	98.09
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	98.09
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	98.09
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	98.09
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	98.09
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	98.08
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	98.08
1x4e_A	85	RNA binding motif, single-stranded interacting pro	98.07
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	98.07
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	98.05
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	98.05
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	98.05
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	98.05
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	98.04
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	98.04
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	98.01
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	98.0
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	98.0
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	97.97
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	97.96
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	97.96
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	97.95
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	97.95
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	97.94
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	97.92
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	97.91
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	97.91
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	97.91
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	97.91
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	97.9
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	97.89
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	97.86
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	97.86
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	97.85
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	97.85
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	97.83
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	97.83
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	97.81
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	97.8
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	97.79
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	97.78
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	97.77
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	96.95
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	97.75
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	97.74
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	97.74
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	97.74
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	97.72
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	97.66
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	97.66
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	97.65
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	97.64
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	97.59
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	97.52
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	97.51
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	97.51
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	97.49
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	97.46
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	97.41
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	97.34
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	97.32
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	97.32
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	97.31
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	97.21
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	97.2
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	97.19
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	97.17
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	97.16
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	97.13
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	96.97
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	96.68
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	96.67
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	96.38
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	96.32
3pq1_A	464	Poly(A) RNA polymerase; nucleotidyl transferase, R	94.27
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	94.19
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	93.93
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	93.86
3pq1_A	464	Poly(A) RNA polymerase; nucleotidyl transferase, R	92.45
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	91.43
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	91.21
1wwh_A	119	Nucleoporin 35, nucleoporin; structural genomics,	86.23
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	84.62
1whv_A	100	Poly(A)-specific ribonuclease; RNA recognition mot	81.84
3ctr_A	101	Poly(A)-specific ribonuclease PARN; protein-RNA-co	81.26
1whv_A	100	Poly(A)-specific ribonuclease; RNA recognition mot	80.76

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=4.9e-19  Score=145.26  Aligned_cols=70  Identities=40%  Similarity=0.561  Sum_probs=65.9

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926         250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIR  319 (512)
Q Consensus       250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~  319 (512)
                      ...|||+||||+++++..+||+|||+|+++||||++++++.+.+.|+.|++||++|+||.+|..||.++.
T Consensus         5 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   74 (79)
T 2dn9_A            5 SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGS   74 (79)
T ss_dssp             CCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCC
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccC
Confidence            4569999999999999999999999999999999998778899999999999999999999999998753

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=1.5e-18  Score=151.96  Aligned_cols=72  Identities=40%  Similarity=0.644  Sum_probs=67.7

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHH
Q psy3926         250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRK  321 (512)
Q Consensus       250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~  321 (512)
                      ...|||+||||+++|+.++||+|||+|+++||||++++++.+.+.|+.|++||++|+||.+|..||.++...
T Consensus        18 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~   89 (112)
T 2ctq_A           18 DTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQ   89 (112)
T ss_dssp             CCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhc
Confidence            357999999999999999999999999999999999877889999999999999999999999999998653

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.74  E-value=1.3e-18  Score=147.23  Aligned_cols=72  Identities=24%  Similarity=0.418  Sum_probs=65.6

Q ss_pred             cCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC------hHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926         248 DIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD------KKAIETFHLLSKAIEVLLDKSARAAYDSVIR  319 (512)
Q Consensus       248 ~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~------~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~  319 (512)
                      .+...|||+||||+++|+..+||+|||+|+++||||+++.+      +.+.+.|+.|++||++|+||.+|..||..+.
T Consensus        12 ~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            34567999999999999999999999999999999998743      5678999999999999999999999998764

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.74  E-value=3.9e-18  Score=148.81  Aligned_cols=73  Identities=37%  Similarity=0.561  Sum_probs=68.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEE  323 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~~~  323 (512)
                      ..|||+||||+++|+.++||+|||+|+++||||++++++++.+.|+.|++||++|+||.+|..||.++.....
T Consensus        16 ~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~   88 (109)
T 2ctw_A           16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY   88 (109)
T ss_dssp             SCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence            5699999999999999999999999999999999988888999999999999999999999999998876543

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=2.6e-18  Score=147.33  Aligned_cols=71  Identities=30%  Similarity=0.475  Sum_probs=66.4

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ...|||+||||+++|+.++||+|||+|+++||||++++++.+.+.|+.|++||++|+||.+|..||..+..
T Consensus        15 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   85 (99)
T 2yua_A           15 SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLS   85 (99)
T ss_dssp             CSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred             CccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence            35699999999999999999999999999999999987788999999999999999999999999986543

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.74  E-value=1.9e-18  Score=141.17  Aligned_cols=68  Identities=37%  Similarity=0.580  Sum_probs=63.9

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIR  319 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~  319 (512)
                      +.|||+||||+++++.++||+|||+|+++||||++++ +.+.+.|+.|++||++|+||.+|..||.++.
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   69 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGE   69 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            4599999999999999999999999999999999974 6788999999999999999999999999874

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.73  E-value=3.2e-18  Score=138.56  Aligned_cols=67  Identities=45%  Similarity=0.695  Sum_probs=61.9

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926         250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIR  319 (512)
Q Consensus       250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~  319 (512)
                      ...|||+||||+++++..+||+|||+|+++||||+++++   .+.|+.|++||++|+||.+|..||.+|.
T Consensus         6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            467999999999999999999999999999999999764   4799999999999999999999999764

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=2.8e-18  Score=140.57  Aligned_cols=69  Identities=36%  Similarity=0.557  Sum_probs=64.5

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926         250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIR  319 (512)
Q Consensus       250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~  319 (512)
                      ...|||+||||+++++..+||+|||+|+++||||+++ .+.+.+.|+.|++||++|+||.+|..||.++.
T Consensus         5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   73 (78)
T 2ctp_A            5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLSNPEKRKQYDQFGS   73 (78)
T ss_dssp             CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCS-SHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence            3569999999999999999999999999999999997 47889999999999999999999999998763

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=3.2e-18  Score=141.31  Aligned_cols=69  Identities=42%  Similarity=0.638  Sum_probs=63.9

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDK-KAIETFHLLSKAIEVLLDKSARAAYDSVIR  319 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~-~a~~~F~~I~~AYevLsDp~~R~~YD~~~~  319 (512)
                      ..|||+||||+++++.++||+|||+|+++||||++++.. .+.+.|+.|++||++|+||.+|..||.++.
T Consensus         8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   77 (82)
T 2ej7_A            8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS   77 (82)
T ss_dssp             SCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred             CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence            459999999999999999999999999999999998653 678899999999999999999999998763

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=4.3e-18  Score=142.83  Aligned_cols=70  Identities=33%  Similarity=0.506  Sum_probs=65.7

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ...|||+||||+++|+.++||+|||+|+++||||+++ ++.+.+.|+.|++||++|+||.+|..||.++..
T Consensus         5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (88)
T 2ctr_A            5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEYDTLGHS   74 (88)
T ss_dssp             CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCC-SHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHH
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence            3569999999999999999999999999999999998 588999999999999999999999999998764

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.72  E-value=4.2e-18  Score=142.86  Aligned_cols=68  Identities=40%  Similarity=0.580  Sum_probs=64.2

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIR  319 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~  319 (512)
                      ..|||+||||+++|+.++||+|||+|+++||||++++ +.+.+.|+.|++||++|+||.+|..||.++.
T Consensus        16 ~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   83 (88)
T 2cug_A           16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSNEEKRTNYDHYGS   83 (88)
T ss_dssp             SSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence            5699999999999999999999999999999999974 6788999999999999999999999999864

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.71  E-value=1.5e-17  Score=142.90  Aligned_cols=70  Identities=43%  Similarity=0.661  Sum_probs=64.3

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHccChhhhhHHHHHHHHH
Q psy3926         252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-KKAIETFHLLSKAIEVLLDKSARAAYDSVIRRK  321 (512)
Q Consensus       252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~-~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~  321 (512)
                      .|||+||||+++|+.++||+|||+|+++||||++++. +.+.+.|+.|++||++|+||.+|..||.++...
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~   72 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREG   72 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC-
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            3899999999999999999999999999999999865 458899999999999999999999999987643

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=8.4e-18  Score=141.95  Aligned_cols=69  Identities=43%  Similarity=0.659  Sum_probs=64.0

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-KKAIETFHLLSKAIEVLLDKSARAAYDSVIR  319 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~-~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~  319 (512)
                      ..|||+||||+++++..+||+|||+|+++||||+++++ +.+.+.|+.|++||++|+||.+|..||..+.
T Consensus         8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   77 (92)
T 2dmx_A            8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC   77 (92)
T ss_dssp             CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCS
T ss_pred             CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence            45999999999999999999999999999999999865 4688999999999999999999999998763

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.70  E-value=1.6e-17  Score=140.59  Aligned_cols=69  Identities=41%  Similarity=0.627  Sum_probs=63.7

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHH
Q psy3926         250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRK  321 (512)
Q Consensus       250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~  321 (512)
                      ...|||+||||+++++.++||+|||+|+++||||+++++   .+.|+.|++||++|+||.+|..||.++...
T Consensus         6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   74 (92)
T 2o37_A            6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGLEA   74 (92)
T ss_dssp             SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHCHHH
T ss_pred             cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHCHHH
Confidence            467999999999999999999999999999999999765   369999999999999999999999988654

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.69  E-value=3.5e-18  Score=147.35  Aligned_cols=70  Identities=40%  Similarity=0.627  Sum_probs=65.8

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ..|||+||||+++|+.++||+|||+|+++||||++++++.+.+.|+.|++||++|+||.+|..||.++..
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA   71 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTT
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhh
Confidence            3599999999999999999999999999999999987778899999999999999999999999998754

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.68  E-value=2.3e-17  Score=143.54  Aligned_cols=71  Identities=31%  Similarity=0.448  Sum_probs=65.5

Q ss_pred             CCCCcccccCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC---ChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         250 KDLDLYGLLELTIDC-SEQDIRSAYRKKALKCHPDKNPD---DKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       250 ~~~d~YeiLgv~~~A-s~~eIKkAYRkLa~k~HPDk~~~---~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ...|||+||||+++| +.++||+|||+|+++||||++++   .+.+.+.|+.|++||++|+||.+|..||..+..
T Consensus        13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~   87 (109)
T 2qsa_A           13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH   87 (109)
T ss_dssp             TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred             CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence            357999999999999 99999999999999999999975   356889999999999999999999999998864

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.67  E-value=4.2e-17  Score=153.10  Aligned_cols=69  Identities=20%  Similarity=0.316  Sum_probs=63.0

Q ss_pred             CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         252 LDLYGLLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDKK-----AIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       252 ~d~YeiLgv~~~A--s~~eIKkAYRkLa~k~HPDk~~~~~~-----a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      +|||+||||++++  +..+||++||+|+++||||++++.+.     |.+.|..|++||++|+||.+|+.||..+.+
T Consensus         1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g   76 (171)
T 1fpo_A            1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHG   76 (171)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTT
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcC
Confidence            3899999999999  99999999999999999999987643     567999999999999999999999998764

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.66  E-value=1e-16  Score=147.56  Aligned_cols=74  Identities=23%  Similarity=0.412  Sum_probs=66.7

Q ss_pred             ccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh------HHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         247 ADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDK------KAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       247 ~~~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~------~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ......|||+||||+++++.++||+|||+|+++||||++++++      .|.+.|..|++||++|+||.+|+.||..+..
T Consensus         5 ~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~   84 (155)
T 2l6l_A            5 EQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCE   84 (155)
T ss_dssp             CCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHH
T ss_pred             ccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcch
Confidence            3455679999999999999999999999999999999987653      3679999999999999999999999998764

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.65  E-value=7.2e-17  Score=153.15  Aligned_cols=69  Identities=39%  Similarity=0.632  Sum_probs=65.9

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      .|||+||||+++|+.++||+|||+|+++||||++++++++.+.|+.|++||++|+||.+|+.||.++..
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~   70 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK   70 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTT
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccc
Confidence            389999999999999999999999999999999988888999999999999999999999999998854

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=8.5e-17  Score=135.71  Aligned_cols=64  Identities=25%  Similarity=0.361  Sum_probs=59.0

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhH
Q psy3926         249 IKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAA  313 (512)
Q Consensus       249 ~~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~  313 (512)
                      +...|||+||||+++|+.++||+|||+|+++||||++++ +.+.+.|+.|++||++|+||.+|..
T Consensus        24 ~~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           24 RNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             HTCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             hcCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCcccccC
Confidence            456899999999999999999999999999999999974 6788999999999999999998853

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.64  E-value=4.6e-16  Score=150.25  Aligned_cols=70  Identities=17%  Similarity=0.270  Sum_probs=62.4

Q ss_pred             CCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         251 DLDLYGLLELTID--CSEQDIRSAYRKKALKCHPDKNPDDKK-----AIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       251 ~~d~YeiLgv~~~--As~~eIKkAYRkLa~k~HPDk~~~~~~-----a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ..|||+||||+++  ++..+||++||+|+++||||++++++.     |.+.|..|++||++|+||.+|+.||..+.+
T Consensus        42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G  118 (207)
T 3bvo_A           42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHG  118 (207)
T ss_dssp             TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence            5699999999986  799999999999999999999986532     567899999999999999999999986653

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=1.6e-15  Score=130.31  Aligned_cols=84  Identities=31%  Similarity=0.603  Sum_probs=76.9

Q ss_pred             CCCCcceEEEEeecCCCC--CCCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCCCCCCcEEee
Q psy3926          19 NPENYRLRIRWKSSSTDT--DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNY   96 (512)
Q Consensus        19 ~~~~~~lk~~Wk~~~~~~--~~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~~~nPl~~~~   96 (512)
                      +.+.++|||+|++.++|+  .+++++.|+++|++||+|.+|.|..+.+|.|+|||.+.++|+.|+....|+..+||+|.|
T Consensus         7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~   86 (100)
T 2d9o_A            7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISW   86 (100)
T ss_dssp             CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEEC
T ss_pred             CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEE
Confidence            567899999999987654  579999999999999999999988888999999999999999999999999999999999


Q ss_pred             cCCCcc
Q psy3926          97 LNPDVE  102 (512)
Q Consensus        97 l~~~~~  102 (512)
                      ..+.+.
T Consensus        87 a~~~~~   92 (100)
T 2d9o_A           87 LEGQPQ   92 (100)
T ss_dssp             SSCCCC
T ss_pred             ccCCCC
Confidence            986644

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=6.8e-15  Score=126.42  Aligned_cols=89  Identities=29%  Similarity=0.561  Sum_probs=78.0

Q ss_pred             CCCCCcceeEEEeecCCCCC--CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHhhcCCCCCceEE
Q psy3926         405 KLNPENYRLRIRWKSSSTDT--DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTL  482 (512)
Q Consensus       405 ~~~~~~~~lkVKWk~~~~~~--~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~~~~~~~~pL~V  482 (512)
                      ..++..++|+|+|+.+.++.  ..+|+++|+++|++||.|.+|.|+...+|+|||+|++.++|..||....++.+.+|+|
T Consensus         5 ~~~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V   84 (100)
T 2d9o_A            5 SSGQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKI   84 (100)
T ss_dssp             CCCCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEE
T ss_pred             cCCCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEE
Confidence            34567899999999986432  5799999999999999999999998889999999999999999999888888999999


Q ss_pred             EecCCCccccc
Q psy3926         483 NYLNPDVEREE  493 (512)
Q Consensus       483 ~wa~~~~~r~~  493 (512)
                      .|+.+++.+..
T Consensus        85 ~~a~~~~~~~~   95 (100)
T 2d9o_A           85 SWLEGQPQDAS   95 (100)
T ss_dssp             ECSSCCCCCCS
T ss_pred             EEccCCCCCCC
Confidence            99998776543

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.58  E-value=2.1e-15  Score=142.80  Aligned_cols=65  Identities=26%  Similarity=0.401  Sum_probs=59.9

Q ss_pred             CCCccccc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHH
Q psy3926         251 DLDLYGLL------ELTI-DCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVI  318 (512)
Q Consensus       251 ~~d~YeiL------gv~~-~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~  318 (512)
                      ..|||+||      |+++ +++..+||+|||+|+++||||++++   +.+.|..|++||++|+||.+|..||..+
T Consensus        10 ~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A           10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             SCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            45999999      4665 8999999999999999999999975   5689999999999999999999999987

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.54  E-value=1.6e-15  Score=127.79  Aligned_cols=62  Identities=27%  Similarity=0.367  Sum_probs=56.6

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHHHHHHHccChhhhh
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDK-KAIETFHLLSKAIEVLLDKSARA  312 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~-~a~~~F~~I~~AYevLsDp~~R~  312 (512)
                      ..++|+||||+++|+.++||+|||+|+++||||++++++ .|.+.|+.|++||++|+|...|.
T Consensus        15 ~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~   77 (88)
T 1iur_A           15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLD   77 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccc
Confidence            358999999999999999999999999999999998763 58899999999999999987663

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.54  E-value=4.9e-16  Score=159.64  Aligned_cols=69  Identities=35%  Similarity=0.497  Sum_probs=0.0

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926         250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIR  319 (512)
Q Consensus       250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~  319 (512)
                      ...|||+||||+++|+.++||+|||+|+++||||++++ +.|.++|++|++||++|+||.+|+.||+++.
T Consensus        26 ~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~   94 (329)
T 3lz8_A           26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ   94 (329)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             cccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC-hHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence            34699999999999999999999999999999999974 5788999999999999999999999999854

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.54  E-value=1.6e-15  Score=143.53  Aligned_cols=65  Identities=20%  Similarity=0.292  Sum_probs=59.8

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChH---HHHHHHHHHHHHHHccChhhhhHH
Q psy3926         250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKK---AIETFHLLSKAIEVLLDKSARAAY  314 (512)
Q Consensus       250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~---a~~~F~~I~~AYevLsDp~~R~~Y  314 (512)
                      ...|||+||||+++|+..+||+|||+|+++|||||+++.+.   |.+.|+.|++||++|+||.+|+.|
T Consensus       115 ~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          115 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             TTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            34799999999999999999999999999999999976543   789999999999999999999876

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.52  E-value=2.9e-15  Score=127.24  Aligned_cols=56  Identities=20%  Similarity=0.226  Sum_probs=52.0

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---HHHHHHHHHHHHHHHccC
Q psy3926         252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDK---KAIETFHLLSKAIEVLLD  307 (512)
Q Consensus       252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~---~a~~~F~~I~~AYevLsD  307 (512)
                      .++|++|||+++|+..+||+|||+++++|||||+++++   .|.+.|+.|++||++|.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999999998764   378899999999999974

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.51  E-value=7.9e-16  Score=135.57  Aligned_cols=62  Identities=29%  Similarity=0.315  Sum_probs=57.9

Q ss_pred             CCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHH
Q psy3926         252 LDLYGLLELTIDCSE--QDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSV  317 (512)
Q Consensus       252 ~d~YeiLgv~~~As~--~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~  317 (512)
                      .+||+||||+++|+.  .+||+|||+|+++||||++++    .++|+.|++||++|+||.+|+.||.+
T Consensus         8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~   71 (114)
T 1gh6_A            8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDF   71 (114)
T ss_dssp             HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCC
T ss_pred             hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhc
Confidence            489999999999999  999999999999999999975    37999999999999999999999854

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.50  E-value=5e-15  Score=122.12  Aligned_cols=59  Identities=20%  Similarity=0.236  Sum_probs=54.3

Q ss_pred             CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHH
Q psy3926         252 LDLYGLLELTID--CSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAY  314 (512)
Q Consensus       252 ~d~YeiLgv~~~--As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~Y  314 (512)
                      .++|+||||+++  ++..+||+|||+|+++||||++++    .+.|+.|++||++|+|+.+|..+
T Consensus        11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~~   71 (79)
T 1faf_A           11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRM   71 (79)
T ss_dssp             HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHHH
Confidence            489999999999  999999999999999999999863    47999999999999999888763

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.49  E-value=1.3e-15  Score=143.24  Aligned_cols=64  Identities=28%  Similarity=0.295  Sum_probs=57.3

Q ss_pred             CCcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926         252 LDLYGLLELTIDCS--EQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIR  319 (512)
Q Consensus       252 ~d~YeiLgv~~~As--~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~  319 (512)
                      .|||+||||+++|+  .++||+|||+|++++|||++++.    +.|+.|++||++|+||.+|+.||.++.
T Consensus        11 ~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~----e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CC----TTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             ccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCH----HHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            58999999999998  69999999999999999999752    799999999999999999999999885

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.49  E-value=7.4e-15  Score=127.76  Aligned_cols=59  Identities=20%  Similarity=0.276  Sum_probs=52.5

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---Ch----HHHHHHHHHHHHHHHccChh
Q psy3926         250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPD---DK----KAIETFHLLSKAIEVLLDKS  309 (512)
Q Consensus       250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~---~~----~a~~~F~~I~~AYevLsDp~  309 (512)
                      .+.|||+|||++. |+..+||+|||+|+++|||||+++   ++    .|.+.|+.|++||++|+|+.
T Consensus        39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            4579999999996 999999999999999999999863   12    46889999999999999986

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.43  E-value=4.5e-14  Score=114.01  Aligned_cols=56  Identities=21%  Similarity=0.274  Sum_probs=50.9

Q ss_pred             CCcccccCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhh
Q psy3926         252 LDLYGLLELTI-DCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSAR  311 (512)
Q Consensus       252 ~d~YeiLgv~~-~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R  311 (512)
                      .++|+||||++ +++.++||+|||+|+++||||+++ ++   +.|.+|++||++|+|+..|
T Consensus        14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g-~~---~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG-SP---FLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTC-CH---HHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CH---HHHHHHHHHHHHHhhhhhc
Confidence            48999999999 799999999999999999999974 33   6999999999999998765

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.41  E-value=4.4e-12  Score=114.04  Aligned_cols=61  Identities=28%  Similarity=0.394  Sum_probs=53.1

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCC--CceEEEec
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPN--CPLTLNYL  485 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~--~pL~V~wa  485 (512)
                      ..+|++.|+++|+.||.|..|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+  .+|.|.||
T Consensus        99 ~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A  168 (168)
T 1b7f_A           99 RTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA  168 (168)
T ss_dssp             TTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             CCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence            369999999999999999999988654     6999999999999999997  3555544  89999997

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.39  E-value=2.5e-14  Score=160.23  Aligned_cols=72  Identities=39%  Similarity=0.609  Sum_probs=40.8

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKE  322 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~~  322 (512)
                      +.|||+||||+++|+.++||+|||+|+++||||++++++++.+.|+.|++||++|+||.+|+.||.++....
T Consensus        20 ~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~   91 (780)
T 3apo_A           20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL   91 (780)
T ss_dssp             ---CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-----
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccc
Confidence            569999999999999999999999999999999998778899999999999999999999999999986543

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.37  E-value=2.3e-11  Score=113.26  Aligned_cols=64  Identities=22%  Similarity=0.292  Sum_probs=57.8

Q ss_pred             CCCCHHHHHHHhhccC-CeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCC-CCceEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYG-KINILVISPKKRGSALLEFEHADSARRAKL--YELGLP-NCPLTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG-~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~-~~pL~V~wa~~~  488 (512)
                      ..+|++.|+++|+.|| .|..|.|..+.+|+|||+|.+.++|.+|+.  ++..+. +.+|.|.|+.++
T Consensus       130 ~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~  197 (198)
T 1qm9_A          130 PSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST  197 (198)
T ss_dssp             TTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred             CCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence            4689999999999999 999999987779999999999999999997  466667 899999999875

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.36  E-value=2.1e-11  Score=108.99  Aligned_cols=61  Identities=25%  Similarity=0.404  Sum_probs=52.7

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCC--CceEEEec
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPN--CPLTLNYL  485 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~--~pL~V~wa  485 (512)
                      ..+|+++|+++|+.||.|..|.|..+.     +|+|||+|.+.++|.+|+.  ++..+.+  .+|.|.||
T Consensus        98 ~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A  167 (167)
T 1fxl_A           98 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA  167 (167)
T ss_dssp             TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             CcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence            368999999999999999999987654     7999999999999999997  4555555  57999997

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.34  E-value=5.1e-11  Score=111.57  Aligned_cols=69  Identities=17%  Similarity=0.251  Sum_probs=60.9

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVEREE  493 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~~  493 (512)
                      ..+|+++|+++|+.||.|..|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.+++....
T Consensus       135 ~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~~  210 (216)
T 2qfj_A          135 QDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLL  210 (216)
T ss_dssp             TTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSSTTS
T ss_pred             CcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCCCC
Confidence            369999999999999999999998753     7999999999999999997  47778889999999998766553

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.34  E-value=2.4e-11  Score=108.60  Aligned_cols=63  Identities=21%  Similarity=0.222  Sum_probs=55.4

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNP  487 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~  487 (512)
                      ..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|.|.||..
T Consensus        97 ~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~  166 (166)
T 3md3_A           97 VNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK  166 (166)
T ss_dssp             TTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred             CCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence            368999999999999999999987542     7899999999999999997  46667789999999863

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.33  E-value=1.2e-10  Score=111.95  Aligned_cols=74  Identities=20%  Similarity=0.264  Sum_probs=62.2

Q ss_pred             cceeEEEeecCCCCCCCCCHHHHHHHhhccC-CeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCC-CCceEEEec
Q psy3926         410 NYRLRIRWKSSSTDTDVYTRESLTKIFSKYG-KINILVISPKKRGSALLEFEHADSARRAKL--YELGLP-NCPLTLNYL  485 (512)
Q Consensus       410 ~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG-~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~-~~pL~V~wa  485 (512)
                      .++|-|.     +.+..+|++.|+++|+.|| .|..|.|..+.+|+|||+|.+.++|.+|+.  ++..+. +.+|.|.|+
T Consensus       151 ~~~l~V~-----nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a  225 (229)
T 2adc_A          151 SATLHLS-----NIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS  225 (229)
T ss_dssp             CSEEEEE-----CCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred             CCEEEEe-----CCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence            3566664     2224689999999999999 999999977778999999999999999997  466666 899999999


Q ss_pred             CCC
Q psy3926         486 NPD  488 (512)
Q Consensus       486 ~~~  488 (512)
                      .++
T Consensus       226 ~~~  228 (229)
T 2adc_A          226 KST  228 (229)
T ss_dssp             SSC
T ss_pred             cCC
Confidence            865

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.32  E-value=1.3e-11  Score=110.99  Aligned_cols=64  Identities=17%  Similarity=0.293  Sum_probs=56.7

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCCCc
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~~~  489 (512)
                      .+|+++|+++|+.||.|..|.|..++     +|+|||+|.+.++|.+|++. +..+.+.+|.|.|+.+++
T Consensus        98 ~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~pk~  167 (167)
T 2cjk_A           98 DVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPRH  167 (167)
T ss_dssp             TCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCCCC
T ss_pred             CCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCCCC
Confidence            58999999999999999999987643     69999999999999999973 567788999999998763

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.30  E-value=2.8e-11  Score=111.67  Aligned_cols=68  Identities=21%  Similarity=0.315  Sum_probs=54.7

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCCCcccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      ..+|++.|+++|+.||.|..|.|..++     +|+|||+|.+.++|.+|+.. +..+.+.+|.|.|+.++.+..
T Consensus       114 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k~~~~  187 (196)
T 1l3k_A          114 EDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA  187 (196)
T ss_dssp             TTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC------
T ss_pred             CCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCChhHhc
Confidence            369999999999999999999988653     79999999999999999964 455667899999998876664

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.29  E-value=9.5e-11  Score=105.74  Aligned_cols=62  Identities=21%  Similarity=0.345  Sum_probs=52.8

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHHh--hcCCC---CCceEEEecC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKLY--ELGLP---NCPLTLNYLN  486 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~~--~~~~~---~~pL~V~wa~  486 (512)
                      ..+|++.|+++|+.||.|.+|.|..+.    +|+|||+|.+.++|.+|+..  +..+.   +.+|.|.||.
T Consensus       105 ~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad  175 (175)
T 3nmr_A          105 KKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD  175 (175)
T ss_dssp             TTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred             CcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence            369999999999999999999988653    78999999999999999973  33344   3899999984

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.27  E-value=7.5e-10  Score=108.70  Aligned_cols=73  Identities=15%  Similarity=0.248  Sum_probs=61.1

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCC-CCceEEEec
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLP-NCPLTLNYL  485 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~-~~pL~V~wa  485 (512)
                      ..++|-|.=-     ...+|+++|+++|+.||.|.+|.|..+++|+|||+|.+.++|.+|+..  +..+. +.+|+|.|+
T Consensus       206 ~~~~l~v~nl-----~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a  280 (282)
T 3pgw_A          206 PNHILFLTNL-----PEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA  280 (282)
T ss_pred             CCCEEEEeCC-----CCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence            3456666422     236999999999999999999999988889999999999999999973  55566 789999998


Q ss_pred             C
Q psy3926         486 N  486 (512)
Q Consensus       486 ~  486 (512)
                      +
T Consensus       281 k  281 (282)
T 3pgw_A          281 K  281 (282)
T ss_pred             c
Confidence            6

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.20  E-value=2.1e-10  Score=103.65  Aligned_cols=62  Identities=11%  Similarity=0.281  Sum_probs=55.2

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN  486 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~  486 (512)
                      ..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|.|.||.
T Consensus       104 ~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As  172 (172)
T 2g4b_A          104 NYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS  172 (172)
T ss_dssp             TTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence            368999999999999999999998764     7999999999999999997  4666778999999983

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.18  E-value=3.2e-10  Score=111.14  Aligned_cols=65  Identities=23%  Similarity=0.345  Sum_probs=55.3

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHHh--h----cCCCCCceEEEecCCCc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKLY--E----LGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~~--~----~~~~~~pL~V~wa~~~~  489 (512)
                      ..+|++.|+++|+.||.|..|.|..+    .+|+|||+|.+.++|.+|+..  +    .+..+.||.|.|+.+..
T Consensus       106 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~  180 (261)
T 3sde_A          106 PVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD  180 (261)
T ss_dssp             TTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred             CCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence            36899999999999999999998764    379999999999999999974  3    33347899999998753

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.17  E-value=2.9e-10  Score=112.15  Aligned_cols=76  Identities=25%  Similarity=0.288  Sum_probs=62.0

Q ss_pred             CcceeEEEeecCCCCCCC-CCHHHHHHHhhccCCeeEEEEccC------CCceEEEEEcCHHHHHHHHH-hhcCCCCCce
Q psy3926         409 ENYRLRIRWKSSSTDTDV-YTRESLTKIFSKYGKINILVISPK------KRGSALLEFEHADSARRAKL-YELGLPNCPL  480 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~-~te~~L~~iFs~fG~I~~V~i~~~------kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL  480 (512)
                      ...+|.|+--.     .. +|++.|+++|+.||.|..|.|..+      .+|+|||+|.+.++|.+|+. ++..+.+.+|
T Consensus       209 ~~~~l~v~nlp-----~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i  283 (292)
T 2ghp_A          209 EGREIMIRNLS-----TELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREI  283 (292)
T ss_dssp             TTTEEEEEEEC-----TTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEE
T ss_pred             CCceEEEECCC-----cccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEE
Confidence            34567766332     25 899999999999999999998754      36999999999999999993 2566778999


Q ss_pred             EEEecCCCc
Q psy3926         481 TLNYLNPDV  489 (512)
Q Consensus       481 ~V~wa~~~~  489 (512)
                      .|.|+.++|
T Consensus       284 ~V~~a~~k~  292 (292)
T 2ghp_A          284 SVSLADKKP  292 (292)
T ss_dssp             EEEECCCCC
T ss_pred             EEEEecCCC
Confidence            999998865

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.08  E-value=1.2e-09  Score=107.23  Aligned_cols=68  Identities=21%  Similarity=0.282  Sum_probs=59.3

Q ss_pred             CC-CHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccccc
Q psy3926         426 VY-TRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVEREE  493 (512)
Q Consensus       426 ~~-te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~~  493 (512)
                      .+ |+++|+++|+.||.|.+|.|..+    .+|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.+++.+..
T Consensus       195 ~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~  269 (284)
T 3smz_A          195 GFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRS  269 (284)
T ss_dssp             TCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHHH
T ss_pred             ccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcccc
Confidence            55 89999999999999999998764    37999999999999999997  46667889999999998877653

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.08  E-value=1.7e-09  Score=99.76  Aligned_cols=78  Identities=12%  Similarity=0.207  Sum_probs=64.3

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLT  481 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~  481 (512)
                      ..++|-|.=     .+..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|.
T Consensus       113 ~~~~l~v~n-----l~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~  187 (198)
T 2yh0_A          113 SAHKLFIGG-----LPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL  187 (198)
T ss_dssp             CCCEEEEEC-----CCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECE
T ss_pred             CCCEEEEeC-----CCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            345666651     22368999999999999999999998764     7999999999999999997  46667789999


Q ss_pred             EEecCCCccc
Q psy3926         482 LNYLNPDVER  491 (512)
Q Consensus       482 V~wa~~~~~r  491 (512)
                      |.|+.+++..
T Consensus       188 v~~a~~~~~~  197 (198)
T 2yh0_A          188 VQRASVGAKN  197 (198)
T ss_dssp             EEESCCCCCC
T ss_pred             EEECCCCCCC
Confidence            9999887553

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.07  E-value=5.5e-10  Score=101.51  Aligned_cols=65  Identities=18%  Similarity=0.247  Sum_probs=54.6

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~  489 (512)
                      ..+|+++|+++|+.||.|..|......+|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.++|
T Consensus       109 ~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k~  175 (175)
T 1fje_B          109 FNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG  175 (175)
T ss_dssp             SSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred             CCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence            3699999999999999997771112458999999999999999997  4677778999999998764

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.02  E-value=2.6e-09  Score=104.88  Aligned_cols=67  Identities=18%  Similarity=0.273  Sum_probs=57.2

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r  491 (512)
                      ..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.++...
T Consensus       105 ~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~  178 (284)
T 3smz_A          105 PSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT  178 (284)
T ss_dssp             TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC
T ss_pred             CcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC
Confidence            368999999999999999999887543     7899999999999999995  466677889999999865443

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=99.02  E-value=1.8e-09  Score=90.52  Aligned_cols=68  Identities=21%  Similarity=0.224  Sum_probs=61.6

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      ..+|+++|+++|+.||.|.+|.|..+.+|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.+++.+.
T Consensus        10 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~   79 (101)
T 2hvz_A           10 TGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRS   79 (101)
T ss_dssp             SSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSS
T ss_pred             CCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcc
Confidence            4699999999999999999999988778999999999999999997  5778889999999999877554

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=98.99  E-value=6.1e-10  Score=94.38  Aligned_cols=63  Identities=24%  Similarity=0.389  Sum_probs=56.2

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNP  487 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~  487 (512)
                      ..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|.|.||+|
T Consensus        29 ~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP   98 (99)
T 4fxv_A           29 QNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP   98 (99)
T ss_dssp             TTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred             CCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence            469999999999999999999988643     6899999999999999996  46777889999999964

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=98.99  E-value=3.5e-09  Score=104.38  Aligned_cols=67  Identities=15%  Similarity=0.187  Sum_probs=55.2

Q ss_pred             CCCCHHHHHHHhhccC-CeeEEEEccC----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYG-KINILVISPK----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG-~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r  491 (512)
                      ..+|++.|+++|+.|| .|.+|.|..+    .+|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.+....
T Consensus       127 ~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~  200 (292)
T 2ghp_A          127 PSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKS  200 (292)
T ss_dssp             TTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---
T ss_pred             CCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence            3699999999999999 9999998764    38999999999999999997  466677899999999865443

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.98  E-value=1.8e-09  Score=90.09  Aligned_cols=77  Identities=17%  Similarity=0.225  Sum_probs=64.1

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCC--CCceEEEe
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLP--NCPLTLNY  484 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~--~~pL~V~w  484 (512)
                      ..++|-|.     +.+..+|+++|+++|+.||.|.+|.|..+ +|+|||+|.+.++|.+|+.  ++..+.  +.+|.|.|
T Consensus        16 ~~~~l~V~-----nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~   89 (97)
T 1why_A           16 PTTRLWVG-----GLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF   89 (97)
T ss_dssp             CCSCEEEE-----CCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred             CCCEEEEe-----CCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence            34566663     22246999999999999999999999876 8999999999999999997  456667  89999999


Q ss_pred             cCCCccc
Q psy3926         485 LNPDVER  491 (512)
Q Consensus       485 a~~~~~r  491 (512)
                      +.+++.+
T Consensus        90 a~~~~~~   96 (97)
T 1why_A           90 AKSGPSS   96 (97)
T ss_dssp             CCCCCCC
T ss_pred             CCCCCCC
Confidence            9988765

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.96  E-value=6.5e-10  Score=96.34  Aligned_cols=80  Identities=16%  Similarity=0.215  Sum_probs=64.1

Q ss_pred             CCCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--h--cCCCCCceEE
Q psy3926         407 NPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--E--LGLPNCPLTL  482 (512)
Q Consensus       407 ~~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~--~~~~~~pL~V  482 (512)
                      ....++|-|.     +.+..+||++|+++|++||.|.+|.|..+ +|+|||+|++.++|..||..  +  ..+.+.+|.|
T Consensus        13 ~~~~~~LfV~-----nLp~~vte~dL~~lF~~fG~V~~v~i~~~-kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V   86 (105)
T 1sjq_A           13 GVPSRVIHIR-----KLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI   86 (105)
T ss_dssp             CCCCCEEEEC-----SCCTTSCHHHHHHHHHHHCCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred             CCCCCEEEEe-----CCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence            3345566662     22346999999999999999999999876 79999999999999999973  2  3467899999


Q ss_pred             EecCCCcccc
Q psy3926         483 NYLNPDVERE  492 (512)
Q Consensus       483 ~wa~~~~~r~  492 (512)
                      .|+.+++...
T Consensus        87 ~~A~~~~~~~   96 (105)
T 1sjq_A           87 QFSNHKELKT   96 (105)
T ss_dssp             CCCSSSSCCC
T ss_pred             EEcCCCCCCc
Confidence            9998765554

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=98.95  E-value=3.8e-09  Score=91.73  Aligned_cols=69  Identities=19%  Similarity=0.270  Sum_probs=60.6

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVEREE  493 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~~  493 (512)
                      ..+|+++|+++|+.||.|.+|.|..++    +|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.+++....
T Consensus        17 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~   91 (116)
T 2fy1_A           17 RETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSG   91 (116)
T ss_dssp             TTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSCSSS
T ss_pred             CCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCCCCC
Confidence            469999999999999999999998753    7999999999999999997  46777889999999998766554

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=98.95  E-value=4.6e-10  Score=93.48  Aligned_cols=67  Identities=19%  Similarity=0.310  Sum_probs=57.6

Q ss_pred             CCCCHHHHHHHhhccC-CeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh---hcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYG-KINILVISPK-----KRGSALLEFEHADSARRAKLY---ELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG-~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~---~~~~~~~pL~V~wa~~~~~r  491 (512)
                      ..+||++|+++|+.|| .|.+|.|+.+     .+|+|||+|.+.++|.+|+..   ...+.+.+|.|.|+.+++..
T Consensus        11 ~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~~   86 (91)
T 2lxi_A           11 QAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKI   86 (91)
T ss_dssp             SSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCCC
T ss_pred             CCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCCC
Confidence            4799999999999999 8999988764     379999999999999999963   34467899999999887654

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.95  E-value=6e-09  Score=86.89  Aligned_cols=79  Identities=23%  Similarity=0.198  Sum_probs=64.9

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLT  481 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~  481 (512)
                      ..++|-|.=     .+..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|.
T Consensus         7 ~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   81 (99)
T 1whw_A            7 GSGRLFVRN-----LSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLH   81 (99)
T ss_dssp             SCEEEEEEC-----CCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEE
T ss_pred             CCCEEEEeC-----CCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence            445666651     22369999999999999999999997643     7999999999999999996  46677889999


Q ss_pred             EEecCCCcccc
Q psy3926         482 LNYLNPDVERE  492 (512)
Q Consensus       482 V~wa~~~~~r~  492 (512)
                      |.|+.+++.+.
T Consensus        82 V~~a~~~~~~~   92 (99)
T 1whw_A           82 VLPSTIKKEAS   92 (99)
T ss_dssp             EEECCCCSTTC
T ss_pred             EEEcCCCcccc
Confidence            99999876654

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=98.94  E-value=3e-09  Score=89.71  Aligned_cols=80  Identities=16%  Similarity=0.257  Sum_probs=64.9

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH--hhcCCCC---Cc
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKL--YELGLPN---CP  479 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~--~~~~~~~---~p  479 (512)
                      ..++|-|.     +.+..+|+++|+++|+.||.|.+|.|..++    +|+|||+|.+.++|.+|+.  ++..+.+   .+
T Consensus        14 ~~~~l~v~-----nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~   88 (105)
T 2dnh_A           14 RDRKLFVG-----MLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS   88 (105)
T ss_dssp             CCCEEEEE-----SCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred             CCCEEEEe-----CCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence            44566653     122369999999999999999999998754    7999999999999999997  4555666   89


Q ss_pred             eEEEecCCCccccc
Q psy3926         480 LTLNYLNPDVEREE  493 (512)
Q Consensus       480 L~V~wa~~~~~r~~  493 (512)
                      |.|.|+.+++++..
T Consensus        89 l~V~~a~~~~~~~~  102 (105)
T 2dnh_A           89 LVVKFADTDKESGP  102 (105)
T ss_dssp             CEEEESCSSCCCSC
T ss_pred             EEEEECccCcccCC
Confidence            99999998877653

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.94  E-value=3.3e-09  Score=91.19  Aligned_cols=77  Identities=21%  Similarity=0.335  Sum_probs=62.4

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcC--CCCCceEEEe
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELG--LPNCPLTLNY  484 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~--~~~~pL~V~w  484 (512)
                      ..++|-|.=     .+..+|+++|+++|++||.|.+|.|..+ +|+|||+|++.++|.+|+..  +.+  +.+.+|.|.|
T Consensus        14 p~~~l~V~n-----Lp~~~te~~L~~~F~~fG~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~   87 (104)
T 1wex_A           14 VSPVVHVRG-----LCESVVEADLVEALEKFGTICYVMMMPF-KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY   87 (104)
T ss_dssp             CCSEEEEES-----CCSSCCHHHHHHHHTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred             CCCEEEEeC-----CCCCCCHHHHHHHHHhCCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence            445676652     2246999999999999999999998765 79999999999999999973  333  7789999999


Q ss_pred             cCCCccc
Q psy3926         485 LNPDVER  491 (512)
Q Consensus       485 a~~~~~r  491 (512)
                      +..+..+
T Consensus        88 a~~~~~~   94 (104)
T 1wex_A           88 STSKRIT   94 (104)
T ss_dssp             CSSSSCC
T ss_pred             ccCcccc
Confidence            9865443

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.93  E-value=1.7e-09  Score=92.48  Aligned_cols=78  Identities=21%  Similarity=0.258  Sum_probs=63.4

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--h--cCCCCCceEEEe
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--E--LGLPNCPLTLNY  484 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~--~~~~~~pL~V~w  484 (512)
                      ..++|-|.-     .+..+|+++|+++|+.||.|.+|.|..+ +|+|||+|++.++|..|+..  .  ..+.+.+|.|.|
T Consensus        14 p~~~l~V~n-----Lp~~~te~~L~~~F~~fG~v~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~   87 (101)
T 2cq1_A           14 PSRVLHIRK-----LPGEVTETEVIALGLPFGKVTNILMLKG-KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY   87 (101)
T ss_dssp             CCSEEEEES-----CCTTCCHHHHHHTTTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred             CCCEEEEeC-----CCCCCCHHHHHHHHHhcCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence            445677752     2236999999999999999999998875 89999999999999999973  2  336789999999


Q ss_pred             cCCCcccc
Q psy3926         485 LNPDVERE  492 (512)
Q Consensus       485 a~~~~~r~  492 (512)
                      +.++....
T Consensus        88 a~~~~~~~   95 (101)
T 2cq1_A           88 SNHKELKT   95 (101)
T ss_dssp             CSCSSCCC
T ss_pred             cCcccCcC
Confidence            98765554

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=8.3e-09  Score=84.80  Aligned_cols=77  Identities=16%  Similarity=0.177  Sum_probs=63.8

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEec
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYL  485 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa  485 (512)
                      ...++|-|.     +.+..+|+++|+++|+.||.|.+|.|.   +|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+
T Consensus         6 ~~~~~l~V~-----nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   77 (90)
T 2dnq_A            6 SGMVKLFIG-----NLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS   77 (90)
T ss_dssp             SCCEEEEEE-----SCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred             CCCeEEEEe-----CCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence            345566664     122469999999999999999999987   7999999999999999996  456678899999999


Q ss_pred             CCCcccc
Q psy3926         486 NPDVERE  492 (512)
Q Consensus       486 ~~~~~r~  492 (512)
                      .+++.+.
T Consensus        78 ~~~~~~~   84 (90)
T 2dnq_A           78 KNKSKAS   84 (90)
T ss_dssp             SCCCCCC
T ss_pred             CCCCCCC
Confidence            8876654

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.92  E-value=3.9e-09  Score=89.14  Aligned_cols=80  Identities=18%  Similarity=0.312  Sum_probs=65.9

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC------CceEEEEEcCHHHHHHHHH---hhcCCCCC
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK------RGSALLEFEHADSARRAKL---YELGLPNC  478 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k------kg~A~V~F~s~~~A~~Ai~---~~~~~~~~  478 (512)
                      ...++|-|.     +.+..+|+++|+++|+.||.|..|.|..+.      +|+|||+|.+.++|.+|+.   ++..+.+.
T Consensus        13 ~~~~~l~V~-----nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~   87 (107)
T 2cph_A           13 QTTSKILVR-----NIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR   87 (107)
T ss_dssp             SCCCCEEEE-----SCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred             CCCCEEEEe-----CCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence            345566664     222369999999999999999999998763      8999999999999999996   46677889


Q ss_pred             ceEEEecCCCcccc
Q psy3926         479 PLTLNYLNPDVERE  492 (512)
Q Consensus       479 pL~V~wa~~~~~r~  492 (512)
                      +|.|.|+.+++...
T Consensus        88 ~l~v~~a~~~~~~~  101 (107)
T 2cph_A           88 RLVLEWADSEVTVQ  101 (107)
T ss_dssp             BCEEEECCCCCCCC
T ss_pred             EEEEEeCCCCCCCC
Confidence            99999999876654

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=98.91  E-value=2.1e-09  Score=87.28  Aligned_cols=65  Identities=15%  Similarity=0.166  Sum_probs=55.8

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~  489 (512)
                      ..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.++|
T Consensus        16 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~kp   87 (87)
T 3bs9_A           16 PEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP   87 (87)
T ss_dssp             TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC---
T ss_pred             CCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCCC
Confidence            369999999999999999999998653     7999999999999999997  4666778999999998765

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.90  E-value=1.8e-09  Score=92.80  Aligned_cols=63  Identities=19%  Similarity=0.218  Sum_probs=55.5

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcC--CCCCceEEEecCCCc
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELG--LPNCPLTLNYLNPDV  489 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~--~~~~pL~V~wa~~~~  489 (512)
                      .+|+++|+++|+.||.|.+|.|..+ +|+|||+|++.++|..||..  +.+  +.+.+|.|.|+.+..
T Consensus        27 ~~te~dL~~lF~~fG~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~   93 (102)
T 1x4d_A           27 KNLRYQLLQLVEPFGVISNHLILNK-INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK   93 (102)
T ss_dssp             SSHHHHHHTTTGGGSCEEEEEECSS-SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCT
T ss_pred             cCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCC
Confidence            6899999999999999999999865 59999999999999999974  333  678999999998644

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=98.90  E-value=2.1e-09  Score=87.32  Aligned_cols=67  Identities=27%  Similarity=0.384  Sum_probs=59.2

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC------CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK------KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~------kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r  491 (512)
                      ..+|+++|+++|+.||.|.+|.|..+      .+|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.++.+|
T Consensus        14 ~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~R   88 (88)
T 4a8x_A           14 RNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPR   88 (88)
T ss_dssp             TTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCCCCC
T ss_pred             CCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCCCCC
Confidence            46899999999999999999998753      47999999999999999997  567778899999999887664

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=5.4e-09  Score=87.31  Aligned_cols=80  Identities=15%  Similarity=0.206  Sum_probs=65.5

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH-hhcCCCCCceE
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL-YELGLPNCPLT  481 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~  481 (512)
                      ...++|-|.=     .+..+|+++|+++|+.||.|.+|.|..+     .+|+|||+|.+.++|.+|+. ++..+.+.+|.
T Consensus         8 ~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~   82 (99)
T 2dgs_A            8 SKSNKIFVGG-----IPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE   82 (99)
T ss_dssp             SSCCEEEEES-----CCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCE
T ss_pred             CCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEE
Confidence            3456676642     2236999999999999999999999864     37999999999999999997 45667789999


Q ss_pred             EEecCCCcccc
Q psy3926         482 LNYLNPDVERE  492 (512)
Q Consensus       482 V~wa~~~~~r~  492 (512)
                      |.|+.++..+.
T Consensus        83 V~~a~~~~~~~   93 (99)
T 2dgs_A           83 VKRAEPRDSKS   93 (99)
T ss_dssp             EEECCCCCCCC
T ss_pred             EEECCCCcccC
Confidence            99998876654

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.89  E-value=8.9e-09  Score=85.06  Aligned_cols=68  Identities=24%  Similarity=0.419  Sum_probs=60.3

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      ..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.+++.+.
T Consensus        15 ~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~   89 (95)
T 2dnz_A           15 FNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGG   89 (95)
T ss_dssp             TTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCCCC
T ss_pred             CCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccCCC
Confidence            369999999999999999999998653     7999999999999999997  5777888999999998876654

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=98.89  E-value=4.2e-09  Score=90.37  Aligned_cols=80  Identities=14%  Similarity=0.169  Sum_probs=65.4

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLT  481 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~  481 (512)
                      ..++|-|.     +.+..+|+++|+++|+.||.|..|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|.
T Consensus        14 ~~~~l~V~-----nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   88 (115)
T 2dgo_A           14 NHFHVFVG-----DLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR   88 (115)
T ss_dssp             TCEEEEEE-----SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred             CCcEEEEe-----CCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            44566664     122369999999999999999999998754     7999999999999999997  45667789999


Q ss_pred             EEecCCCccccc
Q psy3926         482 LNYLNPDVEREE  493 (512)
Q Consensus       482 V~wa~~~~~r~~  493 (512)
                      |.|+.+++.+..
T Consensus        89 V~~a~~~~~~~~  100 (115)
T 2dgo_A           89 TNWATRKPPAPK  100 (115)
T ss_dssp             EEESSCCCCCSC
T ss_pred             EEEccCCCCCCc
Confidence            999998766654

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=98.89  E-value=2.3e-09  Score=96.28  Aligned_cols=64  Identities=30%  Similarity=0.436  Sum_probs=56.1

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCce-EEEEEcCHHHHHHHHHh--hcCCCC--CceEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGS-ALLEFEHADSARRAKLY--ELGLPN--CPLTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~-A~V~F~s~~~A~~Ai~~--~~~~~~--~pL~V~wa~~~  488 (512)
                      -.+|+++|+++|++||.|.+|+|..+.+|+ |||+|.+.++|..|+..  +..+.+  .+|+|+|+++.
T Consensus        38 ~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~  106 (130)
T 3zzy_A           38 YPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT  106 (130)
T ss_dssp             SCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred             CCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence            369999999999999999999998877787 99999999999999974  555555  78999999865

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=98.88  E-value=2.6e-09  Score=92.38  Aligned_cols=69  Identities=22%  Similarity=0.312  Sum_probs=58.6

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC---CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK---RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVEREE  493 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k---kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~~  493 (512)
                      ..+|+++|+++|+.||.|.+|.|..++   +|+|||+|.+.++|.+||.  ++..+.+.+|.|.|+.++.++..
T Consensus        15 ~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~   88 (115)
T 4f25_A           15 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA   88 (115)
T ss_dssp             TTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC---
T ss_pred             CCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcccccc
Confidence            469999999999999999999988654   7999999999999999996  46667789999999988766643

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=5.2e-09  Score=87.57  Aligned_cols=78  Identities=21%  Similarity=0.251  Sum_probs=64.8

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKL--YELGLPNCPLTL  482 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V  482 (512)
                      ..++|-|.=     .+..+|+++|+++|+.||.|.+|.|..++    +|+|||+|.+.++|.+|+.  ++..+.+.+|.|
T Consensus        16 ~~~~l~v~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v   90 (100)
T 2do4_A           16 EKHKLFISG-----LPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV   90 (100)
T ss_dssp             CCSCEEEES-----CCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred             CCCEEEEeC-----CCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence            445677651     22369999999999999999999998654    6999999999999999996  467778899999


Q ss_pred             EecCCCccc
Q psy3926         483 NYLNPDVER  491 (512)
Q Consensus       483 ~wa~~~~~r  491 (512)
                      .|+.+++.+
T Consensus        91 ~~a~~~~~~   99 (100)
T 2do4_A           91 AISNSGPSS   99 (100)
T ss_dssp             EECCCCSCC
T ss_pred             EECCCCCCC
Confidence            999987764

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.88  E-value=3.9e-09  Score=88.10  Aligned_cols=76  Identities=21%  Similarity=0.228  Sum_probs=63.5

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN  486 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~  486 (512)
                      ..++|-|.=   .    .+|+++|+++|+.||.|.+|.|. ..+|+|||+|.+.++|.+||.  ++..+.+.+|.|.|+.
T Consensus        14 ~~~~l~V~n---~----~~t~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~   85 (97)
T 1x5p_A           14 KGNTLYVYG---E----DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR   85 (97)
T ss_dssp             CCSEEEEEC---S----SCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred             CCCEEEEcC---C----CCCHHHHHHHHhhCCCEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence            445676652   1    59999999999999999999985 568999999999999999996  4666778999999998


Q ss_pred             CCcccc
Q psy3926         487 PDVERE  492 (512)
Q Consensus       487 ~~~~r~  492 (512)
                      +++.+.
T Consensus        86 ~~~~~~   91 (97)
T 1x5p_A           86 KQPMLD   91 (97)
T ss_dssp             SCCCCC
T ss_pred             CCCCCC
Confidence            876654

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=5.3e-09  Score=87.99  Aligned_cols=80  Identities=21%  Similarity=0.267  Sum_probs=66.1

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC---CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK---KRGSALLEFEHADSARRAKL--YELGLPNCPLTLN  483 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~---kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~  483 (512)
                      ..++|-|.=-     +..+|+++|+++|+.||.|.+|.|..+   .+|+|||+|.+.++|.+|+.  ++..+.+.+|.|.
T Consensus        14 ~~~~l~V~nl-----p~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~   88 (103)
T 2d9p_A           14 QVVNLYVKNL-----DDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA   88 (103)
T ss_dssp             SCCCEEEECC-----CTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred             CCCEEEEeCC-----CCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence            4456666522     236999999999999999999998864   47999999999999999997  4677888999999


Q ss_pred             ecCCCccccc
Q psy3926         484 YLNPDVEREE  493 (512)
Q Consensus       484 wa~~~~~r~~  493 (512)
                      |+.++.++..
T Consensus        89 ~a~~~~~~~~   98 (103)
T 2d9p_A           89 LAQRKEERQS   98 (103)
T ss_dssp             ECSSCCCCCC
T ss_pred             EecccccCCC
Confidence            9998776653

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.86  E-value=5.9e-09  Score=88.98  Aligned_cols=66  Identities=11%  Similarity=0.118  Sum_probs=57.3

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCC-----CceEEEecCCCcccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPN-----CPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~-----~pL~V~wa~~~~~r~  492 (512)
                      ..+|+++|+++|+.||.|..|.|..+  |+|||+|.+.++|.+||..  +..+.+     .+|.|.|+.+++...
T Consensus        25 ~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~~~   97 (108)
T 1x4c_A           25 PSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPSY   97 (108)
T ss_dssp             SSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSCCC
T ss_pred             CCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCCCC
Confidence            46999999999999999999999877  9999999999999999973  445555     799999999866543

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.86  E-value=3.5e-09  Score=93.62  Aligned_cols=78  Identities=17%  Similarity=0.227  Sum_probs=63.5

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--h--cCCCCCceEEEe
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--E--LGLPNCPLTLNY  484 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~--~~~~~~pL~V~w  484 (512)
                      ..++|-|.     +.+..+|+++|+++|+.||.|.+|.|..+ +|+|||+|++.++|.+||..  +  ..+.+.+|.|.|
T Consensus        30 ps~~LfVg-----NLp~~vte~dL~~lF~~fG~V~~v~i~~~-kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~  103 (119)
T 2ad9_A           30 PSRVIHIR-----KLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF  103 (119)
T ss_dssp             CCSEEEEE-----SCCTTCCHHHHHHHHTTTSCCCEEEEEGG-GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred             CCCEEEEe-----CCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence            44566664     12236999999999999999999999876 79999999999999999973  2  457789999999


Q ss_pred             cCCCcccc
Q psy3926         485 LNPDVERE  492 (512)
Q Consensus       485 a~~~~~r~  492 (512)
                      +.+++...
T Consensus       104 a~~k~~~~  111 (119)
T 2ad9_A          104 SNHKELKT  111 (119)
T ss_dssp             CSSSSCCC
T ss_pred             ccCCCCCc
Confidence            98765544

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=98.86  E-value=2.2e-09  Score=89.13  Aligned_cols=77  Identities=18%  Similarity=0.249  Sum_probs=58.4

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHhhcCCCCCceEEEecCCC
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~~~~~~~~pL~V~wa~~~  488 (512)
                      ..++|-|.-     .+..+|+++|+++|++||.|.+|.|..+.+|+|||+|.+.++|.++........+.+|.|.|+.++
T Consensus        10 ~~~~l~V~~-----Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~k   84 (89)
T 3d2w_A           10 HGSKVFVGR-----CTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEPK   84 (89)
T ss_dssp             -CCEEEEES-----CCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC--
T ss_pred             CCCEEEEeC-----CCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCCC
Confidence            445565532     123699999999999999999999998889999999999999996644444455788999999876


Q ss_pred             cc
Q psy3926         489 VE  490 (512)
Q Consensus       489 ~~  490 (512)
                      ..
T Consensus        85 ~~   86 (89)
T 3d2w_A           85 HN   86 (89)
T ss_dssp             --
T ss_pred             Cc
Confidence            54

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.86  E-value=5.1e-09  Score=89.24  Aligned_cols=79  Identities=16%  Similarity=0.245  Sum_probs=65.3

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEec
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYL  485 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa  485 (512)
                      ...++|-|.=     .+..+|+++|+++|+.||.|.+|.|..+ +|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+
T Consensus        23 ~~~~~l~V~n-----l~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   96 (109)
T 1x4g_A           23 PKNCTVYCGG-----IASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG   96 (109)
T ss_dssp             SSCCEEEEEC-----CSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             CCCcEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence            3456776632     1236999999999999999999999876 8999999999999999996  466677899999999


Q ss_pred             CCCcccc
Q psy3926         486 NPDVERE  492 (512)
Q Consensus       486 ~~~~~r~  492 (512)
                      .+++...
T Consensus        97 ~~~~~~~  103 (109)
T 1x4g_A           97 KESPDMT  103 (109)
T ss_dssp             CCCCSSC
T ss_pred             CCCCCCC
Confidence            9876654

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=98.86  E-value=5.4e-09  Score=88.24  Aligned_cols=77  Identities=21%  Similarity=0.326  Sum_probs=63.7

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLT  481 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~  481 (512)
                      ..++|-|. +    .+..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|.
T Consensus        22 ~~~~l~V~-n----lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   96 (106)
T 1p27_B           22 EGWILFVT-G----VHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS   96 (106)
T ss_dssp             TBEEEEEE-C----CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred             CCCEEEEe-C----CCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence            44566665 1    22369999999999999999999998543     6999999999999999997  46777889999


Q ss_pred             EEecCCCcc
Q psy3926         482 LNYLNPDVE  490 (512)
Q Consensus       482 V~wa~~~~~  490 (512)
                      |.|+.++++
T Consensus        97 V~~a~~~~~  105 (106)
T 1p27_B           97 VDWCFVRGP  105 (106)
T ss_dssp             EEESEESSC
T ss_pred             EEeecCCCC
Confidence            999987665

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.85  E-value=6.4e-09  Score=87.48  Aligned_cols=79  Identities=13%  Similarity=0.119  Sum_probs=64.6

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC---CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK---KRGSALLEFEHADSARRAKL--YELGLPNCPLTLN  483 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~---kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~  483 (512)
                      ..++|-|.     +.+..+|+++|+++|+.||.|.+|.|..+   .+|+|||+|.+.++|.+|+.  ++..+.+.+|.|.
T Consensus        14 ~~~~l~V~-----nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~   88 (103)
T 2cqi_A           14 QPRTLYVG-----NLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN   88 (103)
T ss_dssp             CCCEEEEE-----SCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred             CCCEEEEe-----CCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence            44566664     12236899999999999999999999874   47999999999999999997  4666778999999


Q ss_pred             ecCCCcccc
Q psy3926         484 YLNPDVERE  492 (512)
Q Consensus       484 wa~~~~~r~  492 (512)
                      |+.++..+.
T Consensus        89 ~a~~~~~~~   97 (103)
T 2cqi_A           89 WATTPSSQK   97 (103)
T ss_dssp             ECCCTTCCC
T ss_pred             ECCCCcccc
Confidence            999876654

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.85  E-value=7.8e-09  Score=86.94  Aligned_cols=79  Identities=20%  Similarity=0.278  Sum_probs=65.1

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC---CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK---RGSALLEFEHADSARRAKL--YELGLPNCPLTLN  483 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k---kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~  483 (512)
                      ..++|-|.     +.+..+|+++|+++|+.||.|.+|.|..++   +|+|||+|.+.++|.+|+.  ++..+.+.+|.|.
T Consensus        14 ~~~~l~V~-----nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~   88 (103)
T 2cq3_A           14 TPKRLHVS-----NIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN   88 (103)
T ss_dssp             CCCEEEEE-----SCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred             CCCEEEEe-----CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence            44566664     122369999999999999999999998653   8999999999999999997  4666788999999


Q ss_pred             ecCCCcccc
Q psy3926         484 YLNPDVERE  492 (512)
Q Consensus       484 wa~~~~~r~  492 (512)
                      |+.+++.+.
T Consensus        89 ~a~~~~~~~   97 (103)
T 2cq3_A           89 NATARVMTN   97 (103)
T ss_dssp             ECCSSCCCC
T ss_pred             EcccCCCCC
Confidence            998876654

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.85  E-value=4e-09  Score=88.71  Aligned_cols=79  Identities=20%  Similarity=0.423  Sum_probs=64.9

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLT  481 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~  481 (512)
                      ..++|-|.   +  .+..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|.
T Consensus        14 ~~~~l~V~---n--lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   88 (103)
T 2cq0_A           14 DNATIRVT---N--LSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN   88 (103)
T ss_dssp             SSEEEEEE---S--CCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred             CCCEEEEe---C--CCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence            44566664   1  22369999999999999999999998653     6899999999999999997  45667789999


Q ss_pred             EEecCCCcccc
Q psy3926         482 LNYLNPDVERE  492 (512)
Q Consensus       482 V~wa~~~~~r~  492 (512)
                      |.|+.+++.+.
T Consensus        89 v~~a~~~~~~~   99 (103)
T 2cq0_A           89 VEWAKPSTNSG   99 (103)
T ss_dssp             EEESSCCCCSC
T ss_pred             EEECCCCCCCC
Confidence            99998876654

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.85  E-value=2e-09  Score=88.21  Aligned_cols=68  Identities=19%  Similarity=0.276  Sum_probs=59.0

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHhhcCCCCCceEEEecCCCcccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      ..+|+++|+++|+.||.|.+|.|..+.+|+|||+|.+.++|.+|+.......+.+|.|.|+.++..+.
T Consensus        15 ~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~~~~~~   82 (88)
T 1wf0_A           15 GDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSN   82 (88)
T ss_dssp             SSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCCCCCC
T ss_pred             CCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCCCCCCC
Confidence            36999999999999999999999988899999999999999987665555577899999998765543

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=98.84  E-value=4.1e-09  Score=89.72  Aligned_cols=79  Identities=18%  Similarity=0.286  Sum_probs=64.6

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCce
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPL  480 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL  480 (512)
                      ...++|-|.     +.+..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|
T Consensus        24 ~~~~~l~V~-----nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l   98 (110)
T 1oo0_B           24 VEGWILFVT-----SIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI   98 (110)
T ss_dssp             TTBEEEEEE-----SCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred             CCCCEEEEe-----CCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence            344566664     122369999999999999999999998653     7999999999999999997  4666778999


Q ss_pred             EEEecCCCccc
Q psy3926         481 TLNYLNPDVER  491 (512)
Q Consensus       481 ~V~wa~~~~~r  491 (512)
                      .|.|+.+++++
T Consensus        99 ~V~~a~~~~~~  109 (110)
T 1oo0_B           99 QVDWCFVKGPK  109 (110)
T ss_dssp             EEEESEESSCC
T ss_pred             EEEEcccCCCC
Confidence            99999876654

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=98.84  E-value=6.3e-09  Score=89.41  Aligned_cols=74  Identities=27%  Similarity=0.400  Sum_probs=59.9

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcC--CCCCceEEEe
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELG--LPNCPLTLNY  484 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~--~~~~pL~V~w  484 (512)
                      ..++|-|+     +.+..+|+++|+++|++||.|.+|.|.+ .||+|||+|++.++|.+||..  +..  +.+.+|.|.|
T Consensus        20 ps~~l~V~-----NLp~~~te~~L~~lF~~fG~V~~v~i~~-~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~   93 (100)
T 3r27_A           20 ASPVVHIR-----GLIDGVVEADLVEALQEFGPISYVVVMP-KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY   93 (100)
T ss_dssp             CCSEEEEE-----SCCTTCCHHHHHHHHGGGSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred             CCcEEEEe-----CCCCCCCHHHHHHHHhccCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence            44556554     2224699999999999999999999875 479999999999999999974  343  5689999999


Q ss_pred             cCCC
Q psy3926         485 LNPD  488 (512)
Q Consensus       485 a~~~  488 (512)
                      +..+
T Consensus        94 S~~k   97 (100)
T 3r27_A           94 STSQ   97 (100)
T ss_dssp             CSCS
T ss_pred             cccc
Confidence            9764

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=98.84  E-value=7.7e-09  Score=96.37  Aligned_cols=64  Identities=30%  Similarity=0.432  Sum_probs=56.0

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-CceEEEEEcCHHHHHHHHH--hhcCCCC--CceEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-RGSALLEFEHADSARRAKL--YELGLPN--CPLTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-kg~A~V~F~s~~~A~~Ai~--~~~~~~~--~pL~V~wa~~~  488 (512)
                      ..+|+++|+++|++||.|..|.|..++ +|+|||+|.+.++|..|+.  ++..+.+  .+|+|.|++++
T Consensus        56 ~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~  124 (164)
T 1sjr_A           56 YPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT  124 (164)
T ss_dssp             SCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred             CCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence            469999999999999999999987554 7899999999999999998  4666654  89999999875

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.84  E-value=7.9e-09  Score=86.61  Aligned_cols=79  Identities=22%  Similarity=0.337  Sum_probs=64.9

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLT  481 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~  481 (512)
                      ..++|-|.=     .+..+|+++|+++|+.||.|..|.|..+     .+|+|||+|.+.++|.+|+.  ++..+.+.+|.
T Consensus        11 ~~~~l~v~n-----Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   85 (102)
T 1x5s_A           11 DEGKLFVGG-----LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR   85 (102)
T ss_dssp             CCSEEEEES-----CCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred             CCCEEEEEC-----CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence            445666642     2236999999999999999999999864     37999999999999999996  46778889999


Q ss_pred             EEecCCCcccc
Q psy3926         482 LNYLNPDVERE  492 (512)
Q Consensus       482 V~wa~~~~~r~  492 (512)
                      |.|+.+++...
T Consensus        86 v~~a~~~~~~~   96 (102)
T 1x5s_A           86 VDQAGKSSDNR   96 (102)
T ss_dssp             EEEEECCCCCC
T ss_pred             EEECCCCCCCC
Confidence            99998766543

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=98.84  E-value=6.8e-09  Score=83.51  Aligned_cols=65  Identities=20%  Similarity=0.185  Sum_probs=57.3

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~  489 (512)
                      ..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.+++
T Consensus        11 ~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~   82 (83)
T 3md1_A           11 VNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKLE   82 (83)
T ss_dssp             TTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred             CCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence            468999999999999999999987542     7999999999999999997  4666778999999998764

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.84  E-value=4.8e-09  Score=86.84  Aligned_cols=69  Identities=23%  Similarity=0.253  Sum_probs=59.7

Q ss_pred             CCCCHHHHHHHhhccCCeeEE-EEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccccc
Q psy3926         425 DVYTRESLTKIFSKYGKINIL-VISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVEREE  493 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V-~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~~  493 (512)
                      ..+|+++|+++|+.||.|.+| .|..+     .+|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.+++.+..
T Consensus        15 ~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~   91 (96)
T 1x5t_A           15 PEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGS   91 (96)
T ss_dssp             TTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCCCCC
T ss_pred             CCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCCCCC
Confidence            369999999999999999999 88765     37999999999999999998  45667789999999988776543

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.84  E-value=1e-08  Score=87.00  Aligned_cols=80  Identities=18%  Similarity=0.257  Sum_probs=65.0

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh--------hcCC
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY--------ELGL  475 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~--------~~~~  475 (512)
                      ..++|-|.     +.+..+|+++|+++|+.||.|.+|.|..+     .+|+|||+|.+.++|.+|+..        +..+
T Consensus        14 ~~~~l~V~-----nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~   88 (111)
T 1x4h_A           14 EGKTVFIR-----NLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL   88 (111)
T ss_dssp             CCCCEEEE-----SCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred             CCCEEEEE-----CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence            44566554     12236999999999999999999999854     379999999999999999973        5667


Q ss_pred             CCCceEEEecCCCccccc
Q psy3926         476 PNCPLTLNYLNPDVEREE  493 (512)
Q Consensus       476 ~~~pL~V~wa~~~~~r~~  493 (512)
                      .+.+|.|.|+.++..+..
T Consensus        89 ~g~~l~v~~a~~~~~~~~  106 (111)
T 1x4h_A           89 DGRQLKVDLAVTRDEAAS  106 (111)
T ss_dssp             SSCEEEEECCCCCCCCCC
T ss_pred             cCEEEEEEECCCCccCCC
Confidence            889999999988766553

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.83  E-value=3.3e-09  Score=89.14  Aligned_cols=69  Identities=20%  Similarity=0.289  Sum_probs=60.9

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVEREE  493 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~~  493 (512)
                      ..+|+++|+++|+.||.|..|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.++..+..
T Consensus        18 ~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~   93 (104)
T 1p1t_A           18 YEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEE   93 (104)
T ss_dssp             TTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTHHHH
T ss_pred             CcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCccchhh
Confidence            369999999999999999999988654     7999999999999999997  46778889999999998776654

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.83  E-value=1.1e-08  Score=86.29  Aligned_cols=80  Identities=14%  Similarity=0.147  Sum_probs=65.9

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCce
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPL  480 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL  480 (512)
                      ...++|-|.=     .+..+|+++|+++|+.||.|..|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|
T Consensus        13 ~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l   87 (105)
T 1x5u_A           13 NQDATVYVGG-----LDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI   87 (105)
T ss_dssp             CTTTEEEEEC-----CCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred             CCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence            3556777752     22369999999999999999999998653     6999999999999999997  4677888999


Q ss_pred             EEEecCCCcccc
Q psy3926         481 TLNYLNPDVERE  492 (512)
Q Consensus       481 ~V~wa~~~~~r~  492 (512)
                      .|.|+.+++.+.
T Consensus        88 ~v~~a~~~~~~~   99 (105)
T 1x5u_A           88 RVNKASAHNKNL   99 (105)
T ss_dssp             EEEETTTTSCCC
T ss_pred             EEEECCCCCcCC
Confidence            999998876654

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.83  E-value=6.5e-09  Score=86.84  Aligned_cols=66  Identities=17%  Similarity=0.228  Sum_probs=58.0

Q ss_pred             CCCCHHHHH----HHhhccCCeeEEEEccCC--CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcc
Q psy3926         425 DVYTRESLT----KIFSKYGKINILVISPKK--RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE  490 (512)
Q Consensus       425 ~~~te~~L~----~iFs~fG~I~~V~i~~~k--kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~  490 (512)
                      ..+|+++|+    ++|+.||.|.+|.|..++  +|+|||+|.+.++|.+||.  ++..+.+.+|.|.|+.+++.
T Consensus        19 ~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~~   92 (96)
T 2dgx_A           19 YRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGASG   92 (96)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSSC
T ss_pred             CCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence            369999999    999999999999998654  8999999999999999997  46667889999999977543

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=98.83  E-value=4.7e-09  Score=86.57  Aligned_cols=68  Identities=18%  Similarity=0.074  Sum_probs=54.1

Q ss_pred             CCCCHHHHHHHhhccC--CeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcccc
Q psy3926         425 DVYTRESLTKIFSKYG--KINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG--~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      ..+|+++|+++|+.||  .|.+|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|.|.++.++++..
T Consensus        11 ~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~~~   87 (90)
T 3p5t_L           11 WWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEHHH   87 (90)
T ss_dssp             TTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-------
T ss_pred             CCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCcccc
Confidence            4689999999999999  99999887653     7999999999999999996  4778889999999998876543

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=7.7e-09  Score=86.95  Aligned_cols=79  Identities=22%  Similarity=0.278  Sum_probs=64.8

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLT  481 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~  481 (512)
                      ..++|-|.     +.+..+|+++|+++|+.||.|..|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|.
T Consensus        12 ~~~~l~V~-----nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   86 (103)
T 2dnm_A           12 GMITLKVD-----NLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR   86 (103)
T ss_dssp             CCCEEEEE-----SCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred             CCeEEEEe-----CCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence            44566664     222369999999999999999999998643     7999999999999999997  46778889999


Q ss_pred             EEecCCCcccc
Q psy3926         482 LNYLNPDVERE  492 (512)
Q Consensus       482 V~wa~~~~~r~  492 (512)
                      |.|+.+..++.
T Consensus        87 V~~a~~~~~~~   97 (103)
T 2dnm_A           87 VQVARYGRRDL   97 (103)
T ss_dssp             EEECSSCCSCC
T ss_pred             EEECCcCCCCC
Confidence            99998765554

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.82  E-value=7.6e-09  Score=87.02  Aligned_cols=78  Identities=12%  Similarity=0.120  Sum_probs=64.3

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHhhcCCCCCceEEE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLYELGLPNCPLTLN  483 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~~~~~~~~pL~V~  483 (512)
                      ..++|-|.=     .+..+|+++|+++|+.||.|..|.|..++     +|+|||+|.+.++|.+|+.....+.+.+|.|.
T Consensus        14 ~~~~l~v~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~   88 (103)
T 2cqg_A           14 KTSDLIVLG-----LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCK   88 (103)
T ss_dssp             CCCCEEEES-----CCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEE
T ss_pred             CCCEEEEEc-----CCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEE
Confidence            445666642     22369999999999999999999987653     68999999999999999987666778999999


Q ss_pred             ecCCCccc
Q psy3926         484 YLNPDVER  491 (512)
Q Consensus       484 wa~~~~~r  491 (512)
                      |+.+++..
T Consensus        89 ~a~~~~~~   96 (103)
T 2cqg_A           89 LPNSKQSQ   96 (103)
T ss_dssp             CCCTTCCC
T ss_pred             ecCCCCcC
Confidence            99876554

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=9.9e-09  Score=86.29  Aligned_cols=80  Identities=20%  Similarity=0.178  Sum_probs=65.0

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhc-cCCeeEEEEccC----CCceEEEEEcCHHHHHHHHHh--hcC-CCCCce
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSK-YGKINILVISPK----KRGSALLEFEHADSARRAKLY--ELG-LPNCPL  480 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~-fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~~--~~~-~~~~pL  480 (512)
                      ..++|-|.=     .+..+|+++|+++|+. ||.|.+|.|..+    .+|+|||+|.+.++|.+|+..  +.. +.+.+|
T Consensus         8 ~~~~l~V~n-----Lp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l   82 (104)
T 2dhg_A            8 PEYSLFVGD-----LTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV   82 (104)
T ss_dssp             CCCCEEEEC-----CCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred             CCcEEEEeC-----CCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence            445666541     2236999999999999 999999999865    379999999999999999973  555 788999


Q ss_pred             EEEecCCCccccc
Q psy3926         481 TLNYLNPDVEREE  493 (512)
Q Consensus       481 ~V~wa~~~~~r~~  493 (512)
                      .|.|+.++..+..
T Consensus        83 ~v~~a~~~~~~~~   95 (104)
T 2dhg_A           83 RLSVAIPKASRVK   95 (104)
T ss_dssp             CCCBCCCCCSCCC
T ss_pred             EEEEccCCCcCCC
Confidence            9999988766654

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=98.82  E-value=8.6e-09  Score=92.72  Aligned_cols=65  Identities=22%  Similarity=0.323  Sum_probs=59.4

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~  489 (512)
                      ..+|+++|+++|+.||.|.+|.|..+.+|+|||+|.+.++|..|+.  ++..+.+.+|.|.|+.+++
T Consensus        83 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~  149 (150)
T 2i2y_A           83 NNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK  149 (150)
T ss_dssp             SCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred             CCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence            3689999999999999999999998889999999999999999997  4677888999999998764

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.81  E-value=5.7e-09  Score=87.50  Aligned_cols=79  Identities=25%  Similarity=0.254  Sum_probs=64.8

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLT  481 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~  481 (512)
                      ..++|-|.=     .+..+|+++|+++|+.||.|.+|.|..+     .+|+|||+|.+.++|.+|+.  ++..+.+.+|.
T Consensus        11 ~~~~l~V~n-----Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   85 (102)
T 2cqb_A           11 TKRVLYVGG-----LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR   85 (102)
T ss_dssp             CCSCEEEES-----CCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CCCEEEEeC-----CCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence            445666642     2236999999999999999999999764     48999999999999999996  46677889999


Q ss_pred             EEecCCCcccc
Q psy3926         482 LNYLNPDVERE  492 (512)
Q Consensus       482 V~wa~~~~~r~  492 (512)
                      |.|+.++..+.
T Consensus        86 V~~a~~~~~~~   96 (102)
T 2cqb_A           86 VNLAKPMRIKE   96 (102)
T ss_dssp             EEECCCCCCCC
T ss_pred             EEeCCCCCCCC
Confidence            99998876554

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=98.81  E-value=1.2e-08  Score=90.57  Aligned_cols=78  Identities=27%  Similarity=0.324  Sum_probs=64.4

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLT  481 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~  481 (512)
                      ..++|-|.     +.+..+|+++|+++|+.||.|..|.|..+     .+|+|||+|.+.++|.+||.  ++..+.+.+|.
T Consensus        45 ~~~~l~V~-----nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~  119 (129)
T 2kxn_B           45 PNCCLGVF-----GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR  119 (129)
T ss_dssp             CSSCBCEE-----TCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred             CCCEEEEe-----CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            44566653     22246999999999999999999999754     37999999999999999997  46778889999


Q ss_pred             EEecCCCccc
Q psy3926         482 LNYLNPDVER  491 (512)
Q Consensus       482 V~wa~~~~~r  491 (512)
                      |.|+.++.++
T Consensus       120 V~~a~~~~p~  129 (129)
T 2kxn_B          120 VDFSITKRPH  129 (129)
T ss_dssp             ESCCSSSSCC
T ss_pred             EEEecCCCCC
Confidence            9999887654

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=98.81  E-value=7.1e-09  Score=89.04  Aligned_cols=79  Identities=14%  Similarity=0.179  Sum_probs=64.3

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLT  481 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~  481 (512)
                      ..++|-|.     +.+..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|.
T Consensus        24 ~~~~l~V~-----nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   98 (115)
T 2cpz_A           24 EGANLFIY-----HLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK   98 (115)
T ss_dssp             TTCCEEEE-----SCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCcEEEEe-----CCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            34566653     122369999999999999999999988654     6899999999999999996  46667789999


Q ss_pred             EEecCCCcccc
Q psy3926         482 LNYLNPDVERE  492 (512)
Q Consensus       482 V~wa~~~~~r~  492 (512)
                      |.|+.++..+.
T Consensus        99 V~~a~~~~~~~  109 (115)
T 2cpz_A           99 VQLKRSKNDSK  109 (115)
T ss_dssp             EECCCCSCCCC
T ss_pred             EEEcCCCCcCC
Confidence            99998876654

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.81  E-value=1e-08  Score=87.17  Aligned_cols=79  Identities=16%  Similarity=0.249  Sum_probs=63.9

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC--CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEe
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK--RGSALLEFEHADSARRAKL--YELGLPNCPLTLNY  484 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k--kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~w  484 (512)
                      ..++|-|.=-     +..+|+++|+++|+.||.|..|.|..+.  +|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|
T Consensus        21 ~~~~l~V~nL-----p~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~   95 (109)
T 1x4a_A           21 NDCRIYVGNL-----PPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF   95 (109)
T ss_dssp             CSSEEEEESC-----CTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred             CCCEEEEeCC-----CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence            4456766521     2369999999999999999999987643  7999999999999999996  35667789999999


Q ss_pred             cCCCcccc
Q psy3926         485 LNPDVERE  492 (512)
Q Consensus       485 a~~~~~r~  492 (512)
                      +.++..+.
T Consensus        96 a~~~~~~~  103 (109)
T 1x4a_A           96 PRSGRGTG  103 (109)
T ss_dssp             CCCCCCCC
T ss_pred             cccCCCCC
Confidence            98765443

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=98.81  E-value=4.7e-09  Score=90.71  Aligned_cols=68  Identities=16%  Similarity=0.113  Sum_probs=59.0

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      ..+|+++|+++|++||.|.+|.|..++     +|+|||+|.+.++|.+||.  ++..+.+.+|.|.|+.....+.
T Consensus        16 ~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~~~~~   90 (110)
T 3s8s_A           16 DNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQQRM   90 (110)
T ss_dssp             TTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTTHHHH
T ss_pred             CCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCcHHH
Confidence            369999999999999999999987543     7999999999999999997  4677788999999998765554

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=98.80  E-value=2.5e-08  Score=85.45  Aligned_cols=78  Identities=18%  Similarity=0.310  Sum_probs=64.4

Q ss_pred             CCCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCc
Q psy3926         407 NPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCP  479 (512)
Q Consensus       407 ~~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~p  479 (512)
                      ....++|-|.=     .+..+|++.|+++|+.||.|..|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+
T Consensus        23 ~~~~~~l~V~n-----Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~   97 (108)
T 2jrs_A           23 SAGPMRLYVGS-----LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP   97 (108)
T ss_dssp             CSSCEEEEEEC-----CCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred             CCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence            34556677652     22369999999999999999999988643     6999999999999999997  577788899


Q ss_pred             eEEEecCCCc
Q psy3926         480 LTLNYLNPDV  489 (512)
Q Consensus       480 L~V~wa~~~~  489 (512)
                      |.|.|+.++.
T Consensus        98 l~V~~a~~k~  107 (108)
T 2jrs_A           98 MKVGHVTERT  107 (108)
T ss_dssp             CEEECSCSSC
T ss_pred             EEEEEcccCC
Confidence            9999998764

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=98.80  E-value=1.3e-08  Score=85.91  Aligned_cols=77  Identities=22%  Similarity=0.320  Sum_probs=62.9

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN  486 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~  486 (512)
                      ..++|-|.     +.+..+|+++|+++|+.||.|..|.|.   +|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.
T Consensus        10 ~~~~l~V~-----nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   81 (103)
T 2dgu_A           10 KVKVLFVR-----NLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK   81 (103)
T ss_dssp             CCCCEEEE-----CCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             CCCEEEEe-----CCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence            34556654     122369999999999999999999986   6799999999999999997  4666778999999999


Q ss_pred             CCccccc
Q psy3926         487 PDVEREE  493 (512)
Q Consensus       487 ~~~~r~~  493 (512)
                      ++..+..
T Consensus        82 ~~~~~~~   88 (103)
T 2dgu_A           82 PPDQKRK   88 (103)
T ss_dssp             CCCCCCC
T ss_pred             CCcccch
Confidence            8766653

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=98.80  E-value=8.1e-09  Score=85.89  Aligned_cols=68  Identities=21%  Similarity=0.166  Sum_probs=59.5

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      ..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.+++...
T Consensus        12 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~   86 (96)
T 2x1f_A           12 YDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDISG   86 (96)
T ss_dssp             TTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSGGG
T ss_pred             CCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCCCC
Confidence            369999999999999999999998653     7999999999999999996  4666778999999998876554

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.80  E-value=1e-08  Score=85.79  Aligned_cols=77  Identities=23%  Similarity=0.320  Sum_probs=63.1

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN  486 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~  486 (512)
                      ..++|-|.     +.+..+|+++|+++|+.||.|..|.|..+ +|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.
T Consensus        14 ~~~~l~V~-----nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~   87 (99)
T 2cpj_A           14 QRSRLFVG-----NLPPDITEEEMRKLFEKYGKAGEVFIHKD-KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC   87 (99)
T ss_dssp             CTTEEEEE-----SCCTTCCHHHHHHHTSTTCCCSEEEEETT-TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred             CCCEEEEe-----CCCCCCCHHHHHHHHhhcCCeEEEEEecC-CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence            44566663     12236999999999999999999998865 7999999999999999996  4667788999999998


Q ss_pred             CCccc
Q psy3926         487 PDVER  491 (512)
Q Consensus       487 ~~~~r  491 (512)
                      +++..
T Consensus        88 ~~~~~   92 (99)
T 2cpj_A           88 HSASL   92 (99)
T ss_dssp             CCSCC
T ss_pred             CCCCC
Confidence            76543

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=98.79  E-value=6.2e-09  Score=87.70  Aligned_cols=61  Identities=15%  Similarity=0.171  Sum_probs=55.8

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN  486 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~  486 (512)
                      ..+||+.|+++|.+||+|.++.|.. .+|+|||+|.+.++|..|++  +++.+.+.+|.|++|.
T Consensus        17 ~~~te~~L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~   79 (89)
T 2wbr_A           17 AQIDGPTLRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS   79 (89)
T ss_dssp             TTCCCHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred             ccCCHHHHHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence            4699999999999999999999865 58999999999999999997  4788899999999993

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.79  E-value=1.8e-08  Score=86.13  Aligned_cols=80  Identities=18%  Similarity=0.129  Sum_probs=64.9

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKL--YELGLPNCPLTL  482 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V  482 (512)
                      ..++|-|.     +....+|+++|+++|+.||.|.+|.|..++    +|+|||+|.+.++|.+|+.  ++..+.+.+|.|
T Consensus        14 ~~~~l~V~-----nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v   88 (114)
T 2do0_A           14 LGSTVFVA-----NLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV   88 (114)
T ss_dssp             CCSCEEEE-----SCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred             CCCEEEEe-----CCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence            45567664     122369999999999999999999988753    6899999999999999997  466677899999


Q ss_pred             EecCCCccccc
Q psy3926         483 NYLNPDVEREE  493 (512)
Q Consensus       483 ~wa~~~~~r~~  493 (512)
                      .|+....++..
T Consensus        89 ~~a~~~~~~~~   99 (114)
T 2do0_A           89 KMDERALPKGD   99 (114)
T ss_dssp             EECSCCCCCSC
T ss_pred             EEcccCCCCCC
Confidence            99987655543

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=98.79  E-value=1.3e-08  Score=85.77  Aligned_cols=80  Identities=21%  Similarity=0.304  Sum_probs=63.7

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh--hcCC---CC
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY--ELGL---PN  477 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~--~~~~---~~  477 (512)
                      ...++|-|.=     .+..+|+++|+++|+.||.|.+|.|..+     .+|+|||+|.+.++|.+|+..  +..+   .+
T Consensus        11 ~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g   85 (106)
T 2dgp_A           11 HDAIKLFIGQ-----IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN   85 (106)
T ss_dssp             TTCEEEEEES-----CCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred             CCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence            3455666641     2236999999999999999999999864     379999999999999999973  4444   67


Q ss_pred             CceEEEecCCCcccc
Q psy3926         478 CPLTLNYLNPDVERE  492 (512)
Q Consensus       478 ~pL~V~wa~~~~~r~  492 (512)
                      .+|.|.|+.++..+.
T Consensus        86 ~~l~v~~a~~~~~~~  100 (106)
T 2dgp_A           86 RPIQVKPADSESRGG  100 (106)
T ss_dssp             SCCEEEECCCCSCCC
T ss_pred             ceEEEEECCcccccC
Confidence            899999998876543

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=9e-09  Score=83.29  Aligned_cols=73  Identities=18%  Similarity=0.253  Sum_probs=60.0

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH---hhcCCCCCceEEEe
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL---YELGLPNCPLTLNY  484 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~---~~~~~~~~pL~V~w  484 (512)
                      ...++|-|.     +.+..+|+++|+++|+.||.|.+|.|..+ +|+|||+|.+.++|.+|+.   ++..+.+.+|.|.|
T Consensus        10 ~~~~~l~V~-----~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~   83 (85)
T 2ytc_A           10 KTITTLYVG-----GLGDTITETDLRNHFYQFGEIRTITVVQR-QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW   83 (85)
T ss_dssp             SSCCCEEEE-----CCTTTSCHHHHHHHHHTTSCEEEEEEEGG-GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred             CCccEEEEc-----CCCCCCCHHHHHHHHHhCCCEeEEEEECC-CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence            345566664     12236999999999999999999999874 7999999999999999997   45667788999999


Q ss_pred             cC
Q psy3926         485 LN  486 (512)
Q Consensus       485 a~  486 (512)
                      ++
T Consensus        84 ak   85 (85)
T 2ytc_A           84 GR   85 (85)
T ss_dssp             CC
T ss_pred             cC
Confidence            84

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.78  E-value=9.9e-09  Score=85.39  Aligned_cols=68  Identities=24%  Similarity=0.280  Sum_probs=58.4

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC--------CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK--------KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~--------kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      ..+|+++|+++|+.||.|..|.|..+        .+|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.++..+.
T Consensus        15 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~   92 (98)
T 2cpf_A           15 FSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPA   92 (98)
T ss_dssp             TTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSCCC
T ss_pred             CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCCCC
Confidence            36999999999999999999998753        25899999999999999998  4666778999999998765544

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=98.78  E-value=1.2e-08  Score=88.79  Aligned_cols=80  Identities=20%  Similarity=0.301  Sum_probs=65.3

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCce
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPL  480 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL  480 (512)
                      ...++|-|.=-     +..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|
T Consensus        20 ~~~~~l~V~nl-----p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l   94 (126)
T 3ex7_B           20 VEGWILFVTGV-----HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI   94 (126)
T ss_dssp             SSSEEEEEESC-----CTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred             CCCCEEEEeCC-----CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence            34556666522     2369999999999999999999997654     8999999999999999996  5677888999


Q ss_pred             EEEecCCCcccc
Q psy3926         481 TLNYLNPDVERE  492 (512)
Q Consensus       481 ~V~wa~~~~~r~  492 (512)
                      .|.|+.+++...
T Consensus        95 ~v~~a~~~~~~~  106 (126)
T 3ex7_B           95 SVDWCFVRGPPK  106 (126)
T ss_dssp             EEEESEESSSCC
T ss_pred             EEEEecCCCCCC
Confidence            999998765544

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=98.78  E-value=8.3e-09  Score=83.35  Aligned_cols=62  Identities=27%  Similarity=0.323  Sum_probs=54.9

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN  486 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~  486 (512)
                      ..+|+++|+++|+.||.|.+|.|..+     .+|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|++
T Consensus        17 ~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak   85 (85)
T 3mdf_A           17 EEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK   85 (85)
T ss_dssp             TTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence            36999999999999999999998754     38999999999999999996  4667778999999985

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=98.78  E-value=6.9e-09  Score=89.09  Aligned_cols=75  Identities=31%  Similarity=0.392  Sum_probs=61.8

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN  486 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~  486 (512)
                      ..++|-|.     +....+|+++|+++|+.||.|..|.|.   +|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.
T Consensus        30 ~~~~l~V~-----nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~  101 (108)
T 2jvo_A           30 SNTRLFVR-----PFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK  101 (108)
T ss_dssp             SCSEEEEC-----SSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred             CCCEEEEE-----CCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence            44566654     222469999999999999999999987   8999999999999999997  4666788999999998


Q ss_pred             CCccc
Q psy3926         487 PDVER  491 (512)
Q Consensus       487 ~~~~r  491 (512)
                      +++.+
T Consensus       102 ~~~~r  106 (108)
T 2jvo_A          102 LPAKR  106 (108)
T ss_dssp             CCC--
T ss_pred             CCCCC
Confidence            87655

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=98.78  E-value=1.4e-08  Score=90.42  Aligned_cols=80  Identities=18%  Similarity=0.205  Sum_probs=63.5

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHH----HHhhccCCeeEEEEcc--CCCceEEEEEcCHHHHHHHHH--hhcCCCCCce
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLT----KIFSKYGKINILVISP--KKRGSALLEFEHADSARRAKL--YELGLPNCPL  480 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~----~iFs~fG~I~~V~i~~--~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL  480 (512)
                      ..++|-|.   +  .+..+++++|+    ++|++||.|.+|.|..  ..+|+|||+|.+.++|..|+.  ++..+.+.+|
T Consensus        28 p~~~LfV~---n--L~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l  102 (127)
T 2a3j_A           28 PSQVVLIT---N--INPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL  102 (127)
T ss_dssp             CCSEEEEE---S--CCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred             CCCEEEEe---C--CCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence            44566663   1  12358888765    7999999999998865  458999999999999999997  4777888999


Q ss_pred             EEEecCCCccccc
Q psy3926         481 TLNYLNPDVEREE  493 (512)
Q Consensus       481 ~V~wa~~~~~r~~  493 (512)
                      .|.|+.++.....
T Consensus       103 ~V~~a~~~~~~~~  115 (127)
T 2a3j_A          103 VITFSETPQSQVA  115 (127)
T ss_dssp             EEEECCCCCHHHH
T ss_pred             EEEEccCcchhcc
Confidence            9999998766553

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=98.78  E-value=1e-08  Score=81.18  Aligned_cols=61  Identities=20%  Similarity=0.217  Sum_probs=54.0

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEec
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL-YELGLPNCPLTLNYL  485 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa  485 (512)
                      ..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+. ++..+.+.+|.|+||
T Consensus         9 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A   75 (75)
T 2mss_A            9 VNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA   75 (75)
T ss_dssp             SSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred             CCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence            468999999999999999999987653     7999999999999999996 356677899999986

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=98.77  E-value=1.1e-08  Score=86.53  Aligned_cols=77  Identities=16%  Similarity=0.198  Sum_probs=60.8

Q ss_pred             CCCCcceeEEEeecCCCCCCCCCHHHHHHHhhccCC--eeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hc---
Q psy3926         406 LNPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGK--INILVISPKK-----RGSALLEFEHADSARRAKLY--EL---  473 (512)
Q Consensus       406 ~~~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~--I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~---  473 (512)
                      ....+++|-|+=     .+..+|+++|+++|++||.  |.+|.|..++     +|+|||+|.+.++|.+|++.  +.   
T Consensus         5 ~~~~m~tlfV~n-----L~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~   79 (95)
T 2lkz_A            5 HHHHMDTIILRN-----IAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPP   79 (95)
T ss_dssp             SSCCCCEEEEES-----CCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSC
T ss_pred             cCCccCEEEEeC-----CCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCC
Confidence            345677887752     2246999999999999995  6788887643     79999999999999999974  22   


Q ss_pred             -CCCCCceEEEecCC
Q psy3926         474 -GLPNCPLTLNYLNP  487 (512)
Q Consensus       474 -~~~~~pL~V~wa~~  487 (512)
                       .+.+.+|.|+||+.
T Consensus        80 ~~i~Gr~i~V~~Aks   94 (95)
T 2lkz_A           80 LKIDGKTIGVDFAKS   94 (95)
T ss_dssp             EEETTEEEEEEECCC
T ss_pred             ceECCEEEEEEEccC
Confidence             24578999999974

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=98.77  E-value=1.1e-08  Score=83.44  Aligned_cols=65  Identities=23%  Similarity=0.206  Sum_probs=56.3

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEecCCCc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL-YELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa~~~~  489 (512)
                      ..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.++.
T Consensus        16 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~~   86 (89)
T 3ucg_A           16 YGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNR   86 (89)
T ss_dssp             TTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTTS
T ss_pred             CCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCCC
Confidence            368999999999999999999988653     8999999999999999994 3566778899999997643

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.77  E-value=1e-08  Score=89.67  Aligned_cols=65  Identities=17%  Similarity=0.244  Sum_probs=55.9

Q ss_pred             CC-CCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--h--cCCCCCceEEEecCCCcc
Q psy3926         425 DV-YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--E--LGLPNCPLTLNYLNPDVE  490 (512)
Q Consensus       425 ~~-~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~--~~~~~~pL~V~wa~~~~~  490 (512)
                      .. +|+++|+++|+.||.|.+|.|.. .+|+|||+|++.++|..||..  +  ..+.+.+|.|.|+.....
T Consensus        35 ~~~~te~~L~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~  104 (112)
T 1x4f_A           35 HSGYSDSAVLKLAEPYGKIKNYILMR-MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKK  104 (112)
T ss_dssp             CSSCCSHHHHTTTTTTSCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSS
T ss_pred             CccCCHHHHHHHHHhcCCEEEEEEec-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccc
Confidence            35 89999999999999999999875 479999999999999999973  3  347889999999976543

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=1.4e-08  Score=83.51  Aligned_cols=76  Identities=11%  Similarity=0.196  Sum_probs=62.1

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN  486 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~  486 (512)
                      ..++|-|.-     .+..+|+++|+++|+.||.|.+|.|.   +++|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.
T Consensus         8 ~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   79 (90)
T 2dnp_A            8 NTWKIFVGN-----VSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST   79 (90)
T ss_dssp             CSCCEEEES-----CCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred             CCCEEEEeC-----CCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence            445666542     12369999999999999999999997   5699999999999999997  4666788999999998


Q ss_pred             CCcccc
Q psy3926         487 PDVERE  492 (512)
Q Consensus       487 ~~~~r~  492 (512)
                      ++..+.
T Consensus        80 ~~~~~~   85 (90)
T 2dnp_A           80 KGQKKS   85 (90)
T ss_dssp             CCCCCC
T ss_pred             CCCCCC
Confidence            875543

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=98.77  E-value=9.5e-09  Score=89.27  Aligned_cols=77  Identities=21%  Similarity=0.163  Sum_probs=62.7

Q ss_pred             ceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEe
Q psy3926         411 YRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL-YELGLPNCPLTLNY  484 (512)
Q Consensus       411 ~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~w  484 (512)
                      ++|-|.--.     ..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|
T Consensus        37 ~~l~V~nlp-----~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~  111 (124)
T 2jwn_A           37 RSVYVGNVD-----YGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLP  111 (124)
T ss_dssp             TEEEEEEEC-----TTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred             CEEEEeCCC-----CCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence            467776432     258999999999999999999987643     8999999999999999995 35567788999999


Q ss_pred             cCCCcccc
Q psy3926         485 LNPDVERE  492 (512)
Q Consensus       485 a~~~~~r~  492 (512)
                      +.+..+..
T Consensus       112 a~~~~~~~  119 (124)
T 2jwn_A          112 KRTNMPGI  119 (124)
T ss_dssp             SSCCCSSC
T ss_pred             CCCCCCCC
Confidence            98765543

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=98.76  E-value=1.4e-08  Score=84.77  Aligned_cols=63  Identities=24%  Similarity=0.292  Sum_probs=55.7

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r  491 (512)
                      .+|+++|+++|+.||.|.+|.|.   +|+|||+|.+.++|..|+.  ++..+.+.+|.|.|+.+++..
T Consensus        22 ~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~   86 (96)
T 2kvi_A           22 NVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNARP   86 (96)
T ss_dssp             CCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC-
T ss_pred             cCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCCC
Confidence            58999999999999999999985   7999999999999999997  466677899999999775544

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.76  E-value=2e-08  Score=85.78  Aligned_cols=63  Identities=13%  Similarity=0.182  Sum_probs=55.9

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNP  487 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~  487 (512)
                      ..+|+++|+++|+.||+|.+|.|..+    .+|+|||+|.+.++|.+|+.. +..+.+.+|.|.|+.+
T Consensus        21 ~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~   88 (103)
T 1s79_A           21 TDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD   88 (103)
T ss_dssp             TTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred             CCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence            36999999999999999999999864    379999999999999999974 5667789999999865

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.75  E-value=2.2e-08  Score=84.83  Aligned_cols=78  Identities=22%  Similarity=0.327  Sum_probs=62.5

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCC-eeEEEEc-c-----CCCceEEEEEcCHHHHHHHHHh----hcCCCC
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGK-INILVIS-P-----KKRGSALLEFEHADSARRAKLY----ELGLPN  477 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~-I~~V~i~-~-----~kkg~A~V~F~s~~~A~~Ai~~----~~~~~~  477 (512)
                      ..++|-|.=     .+..+|+++|+++|+.||. |.+|.|. .     ..+|+|||+|.+.++|..|+..    +..+.+
T Consensus         7 ~~~~l~V~n-----Lp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g   81 (109)
T 2dis_A            7 GNCRLFIGG-----IPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG   81 (109)
T ss_dssp             CSEEEEEEC-----CCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred             CCCEEEEeC-----CCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC
Confidence            445565541     2236999999999999998 9999987 3     3489999999999999999973    356778


Q ss_pred             CceEEEecCCCccc
Q psy3926         478 CPLTLNYLNPDVER  491 (512)
Q Consensus       478 ~pL~V~wa~~~~~r  491 (512)
                      .+|.|.|+.++++.
T Consensus        82 ~~l~V~~a~~~~~~   95 (109)
T 2dis_A           82 HQIAVDWAEPEIDV   95 (109)
T ss_dssp             BCCEEEESCSSCST
T ss_pred             CeEEEEEcCCCCCc
Confidence            99999999976654

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.75  E-value=1.6e-08  Score=87.12  Aligned_cols=62  Identities=19%  Similarity=0.263  Sum_probs=55.8

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~  488 (512)
                      .+|+++|+++|+.||.|..|.|.. .+|+|||+|.+.++|..||.  ++..+.+.+|.|.|+...
T Consensus        21 ~~te~~L~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~   84 (111)
T 1whx_A           21 GTLAAEIQETFSRFGSLGRVLLPE-GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG   84 (111)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEECCS-SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            689999999999999999999875 57999999999999999997  467778899999999754

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=98.75  E-value=1.5e-08  Score=86.95  Aligned_cols=78  Identities=14%  Similarity=0.190  Sum_probs=62.6

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-hcCCCCCceEE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-ELGLPNCPLTL  482 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V  482 (512)
                      ..++|-|.=     .+..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.. +..+.+.+|.|
T Consensus        24 ~~~~lfV~n-----Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V   98 (109)
T 2rs2_A           24 SGCKMFIGG-----LSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP   98 (109)
T ss_dssp             --CCEEEES-----CCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEE
T ss_pred             CCCEEEEeC-----CCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEE
Confidence            445676652     22369999999999999999999998653     79999999999999999974 45567789999


Q ss_pred             EecCCCccc
Q psy3926         483 NYLNPDVER  491 (512)
Q Consensus       483 ~wa~~~~~r  491 (512)
                      .|+.+++.+
T Consensus        99 ~~a~~~~~~  107 (109)
T 2rs2_A           99 KVAFPRRAQ  107 (109)
T ss_dssp             EECCCCCCC
T ss_pred             EEccCCCCC
Confidence            999877654

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=98.75  E-value=1.4e-08  Score=89.87  Aligned_cols=79  Identities=20%  Similarity=0.296  Sum_probs=65.5

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLT  481 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~  481 (512)
                      ..++|-|.     +....+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|.
T Consensus        41 ~~~~l~V~-----nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~  115 (139)
T 1u6f_A           41 VLRNLMVN-----YIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK  115 (139)
T ss_dssp             TTSEEEEE-----SCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred             CCCEEEEe-----CCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence            44667664     222469999999999999999999987643     7999999999999999997  46778889999


Q ss_pred             EEecCCCcccc
Q psy3926         482 LNYLNPDVERE  492 (512)
Q Consensus       482 V~wa~~~~~r~  492 (512)
                      |.|+.++..+.
T Consensus       116 v~~a~~~~~~~  126 (139)
T 1u6f_A          116 VALAASGHQRP  126 (139)
T ss_dssp             EEESSCCCCCC
T ss_pred             EEECCCCCCCC
Confidence            99999876664

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.75  E-value=2.4e-08  Score=83.29  Aligned_cols=77  Identities=13%  Similarity=0.132  Sum_probs=60.9

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN  486 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~  486 (512)
                      ..++|-|.     +.+..+|+++|+++|+.||.|...++....+|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.
T Consensus        18 ~~~~l~V~-----nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~   92 (97)
T 2e5j_A           18 LAADVYVG-----NLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR   92 (97)
T ss_dssp             CCCEEEEE-----CCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred             CCCEEEEe-----CCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence            44566653     1223699999999999999997333344568999999999999999996  4677888999999998


Q ss_pred             CCcc
Q psy3926         487 PDVE  490 (512)
Q Consensus       487 ~~~~  490 (512)
                      ++++
T Consensus        93 ~~~~   96 (97)
T 2e5j_A           93 QQRD   96 (97)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.75  E-value=5.2e-09  Score=105.65  Aligned_cols=66  Identities=38%  Similarity=0.549  Sum_probs=56.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hHHHHHHHHHHHHHHHccChhhhhHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD---KKAIETFHLLSKAIEVLLDKSARAAYDS  316 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~---~~a~~~F~~I~~AYevLsDp~~R~~YD~  316 (512)
                      ..++|.+||+...++..+|+++|+++++++|||+.+++   ..+...|..|.+||++|+||.+|..||.
T Consensus       381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            45899999999999999999999999999999999754   2478899999999999999999999996

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=98.74  E-value=2.2e-08  Score=82.17  Aligned_cols=77  Identities=17%  Similarity=0.201  Sum_probs=62.9

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC---CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK---KRGSALLEFEHADSARRAKL--YELGLPNCPLTLN  483 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~---kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~  483 (512)
                      ..++|-|.=     .+..+|+++|+++|+.||.|..|.|..+   .+|+|||+|.+.++|.+|+.  ++..+.+.+|.|.
T Consensus         7 ~~~~l~V~n-----lp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~   81 (92)
T 2dgv_A            7 GACQIFVRN-----LPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR   81 (92)
T ss_dssp             SCCEEEECS-----CCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred             CCcEEEEeC-----CCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence            445665531     2236999999999999999999998763   37999999999999999997  4677888999999


Q ss_pred             ecCCCcc
Q psy3926         484 YLNPDVE  490 (512)
Q Consensus       484 wa~~~~~  490 (512)
                      |+.++..
T Consensus        82 ~a~~~~~   88 (92)
T 2dgv_A           82 IDRNASG   88 (92)
T ss_dssp             ECSCCSS
T ss_pred             EcCCCCC
Confidence            9987654

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=2.1e-08  Score=82.67  Aligned_cols=76  Identities=16%  Similarity=0.212  Sum_probs=62.0

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN  486 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~  486 (512)
                      ..++|-|. .    .+..+|+++|+++|+.||.|..|.|.   +++|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.
T Consensus         9 ~~~~l~V~-n----Lp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~   80 (92)
T 2dgt_A            9 ASTKLHVG-N----ISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST   80 (92)
T ss_dssp             SSEEEEEE-S----CCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred             CCCEEEEe-C----CCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence            44556553 2    22369999999999999999999996   5599999999999999996  4667788999999998


Q ss_pred             CCcccc
Q psy3926         487 PDVERE  492 (512)
Q Consensus       487 ~~~~r~  492 (512)
                      +++.+.
T Consensus        81 ~~~~~~   86 (92)
T 2dgt_A           81 SRLRTA   86 (92)
T ss_dssp             CCCSCC
T ss_pred             CCCCCC
Confidence            766544

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=98.74  E-value=1.1e-08  Score=89.11  Aligned_cols=67  Identities=10%  Similarity=0.109  Sum_probs=56.6

Q ss_pred             CCCCHHHHHHHhhccC-CeeEEEEc-cCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYG-KINILVIS-PKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG-~I~~V~i~-~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r  491 (512)
                      ..+|+++|+++|+.|| .|..|.|. .+.+|+|||+|.+.++|.+||.  ++..+.+.+|.|.|+.++|+.
T Consensus        38 ~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p~~  108 (111)
T 2jvr_A           38 EGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPPPI  108 (111)
T ss_dssp             CCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC----
T ss_pred             CCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCCC
Confidence            4689999999999999 89999886 4568999999999999999996  467778899999999876654

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.74  E-value=2.2e-08  Score=89.01  Aligned_cols=64  Identities=28%  Similarity=0.427  Sum_probs=54.8

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCce-EEEEEcCHHHHHHHHHh--hcCCCC--CceEEEecCCCc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGS-ALLEFEHADSARRAKLY--ELGLPN--CPLTLNYLNPDV  489 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~-A~V~F~s~~~A~~Ai~~--~~~~~~--~pL~V~wa~~~~  489 (512)
                      -.+|++.|+++|++||.|.+|+|..+ .|+ |||+|.+.++|..|+..  +..+.+  .+|.|.||+++.
T Consensus        35 ~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~  103 (124)
T 2e5i_A           35 YPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR  103 (124)
T ss_dssp             SCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred             CCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence            36999999999999999999998764 595 99999999999999974  555555  689999998653

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.73  E-value=9.8e-09  Score=87.95  Aligned_cols=77  Identities=21%  Similarity=0.301  Sum_probs=63.5

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC---CceEEEEEcCHHHHHHHHH--hhcCCCCCceEE
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK---RGSALLEFEHADSARRAKL--YELGLPNCPLTL  482 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k---kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V  482 (512)
                      ...++|-|.     +....+|+++|+++|+.||.|.+|.|..++   +|+|||+|.+.++|.+|+.  ++..+.+.+|.|
T Consensus        27 ~~~~~l~V~-----nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V  101 (109)
T 2err_A           27 SQPKRLHVS-----NIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV  101 (109)
T ss_dssp             TCCCEEEEE-----SCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred             CCCCEEEEE-----CCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence            345667664     222469999999999999999999998653   7999999999999999997  466678899999


Q ss_pred             EecCCCc
Q psy3926         483 NYLNPDV  489 (512)
Q Consensus       483 ~wa~~~~  489 (512)
                      .|+.+++
T Consensus       102 ~~a~~~~  108 (109)
T 2err_A          102 NNATARV  108 (109)
T ss_dssp             EECCCSC
T ss_pred             EECCCCc
Confidence            9998764

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=98.73  E-value=2e-08  Score=95.81  Aligned_cols=63  Identities=14%  Similarity=0.194  Sum_probs=58.1

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~  488 (512)
                      .+|++.|+++|+.||.|.+|.|..+++|+|||+|.+.++|..||.  ++..+.+.+|.|.|+..+
T Consensus        16 ~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~   80 (205)
T 3tyt_A           16 KMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP   80 (205)
T ss_dssp             TCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred             cCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence            699999999999999999999998889999999999999999997  477788899999999753

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.73  E-value=1.8e-08  Score=86.65  Aligned_cols=68  Identities=18%  Similarity=0.174  Sum_probs=59.0

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCCCcccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      ..+|+++|+++|+.||.|..|.|..++     +|+|||+|.+.++|.+||.. +..+.+.+|.|.|+.++..+.
T Consensus        37 ~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~~~~  110 (116)
T 1x4b_A           37 FETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESG  110 (116)
T ss_dssp             TCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSCCCCC
T ss_pred             CCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCCccCC
Confidence            469999999999999999999988653     79999999999999999975 455677899999998876654

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=98.72  E-value=1.1e-08  Score=85.71  Aligned_cols=74  Identities=14%  Similarity=0.187  Sum_probs=60.7

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN  486 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~  486 (512)
                      ..++|-|.-     ....+|+++|+++|+.||.|.+|.|.. .+|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.
T Consensus        26 ~~~~l~V~n-----lp~~~~~~~l~~~f~~~G~i~~~~~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~   99 (101)
T 2la4_A           26 RVTTAYIGN-----IPHFATEADLIPLFQNFGFILDFKHYP-EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK   99 (101)
T ss_dssp             SCCEEEEES-----CCTTCCHHHHHHHHHTTSCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred             CCCEEEEcC-----CCcccCHHHHHHHHHhCCCEEEEEEec-CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence            445666642     223699999999999999999999874 58999999999999999996  4666778999999997


Q ss_pred             CC
Q psy3926         487 PD  488 (512)
Q Consensus       487 ~~  488 (512)
                      ++
T Consensus       100 ~~  101 (101)
T 2la4_A          100 ER  101 (101)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.72  E-value=2.1e-08  Score=82.64  Aligned_cols=74  Identities=26%  Similarity=0.285  Sum_probs=60.9

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCce
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPL  480 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL  480 (512)
                      ...++|-|.=     .+..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|
T Consensus        14 ~~~~~l~V~n-----lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l   88 (94)
T 2e5h_A           14 PSKSTVYVSN-----LPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI   88 (94)
T ss_dssp             CCTTSEEEES-----CCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred             CCCCEEEEEC-----CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence            3456777752     12369999999999999999999998643     6899999999999999996  4666778999


Q ss_pred             EEEecC
Q psy3926         481 TLNYLN  486 (512)
Q Consensus       481 ~V~wa~  486 (512)
                      .|.||+
T Consensus        89 ~v~~ak   94 (94)
T 2e5h_A           89 KASIAI   94 (94)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            999984

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=98.72  E-value=2e-08  Score=84.31  Aligned_cols=75  Identities=24%  Similarity=0.229  Sum_probs=61.3

Q ss_pred             CCCcceeEEEeecCCCCCC-CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEE
Q psy3926         407 NPENYRLRIRWKSSSTDTD-VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLN  483 (512)
Q Consensus       407 ~~~~~~lkVKWk~~~~~~~-~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~  483 (512)
                      ....++|-|.=     ... .+|+++|+++|+.||.|.+|.|.   +|+|||+|.+.++|.+|+..  +..+.+.+|.|.
T Consensus        19 ~~~~~~l~V~n-----Lp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~   90 (97)
T 2xnq_A           19 SHMKSRLFIGN-----LPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE   90 (97)
T ss_dssp             CCTTCEEEEES-----CCSSCCCHHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred             CCCCCEEEEeC-----CCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence            34556777652     223 58999999999999999999984   89999999999999999973  555678899999


Q ss_pred             ecCCCc
Q psy3926         484 YLNPDV  489 (512)
Q Consensus       484 wa~~~~  489 (512)
                      |+.+++
T Consensus        91 ~a~~~~   96 (97)
T 2xnq_A           91 VSSSNA   96 (97)
T ss_dssp             ECCCCC
T ss_pred             ecCCCC
Confidence            997654

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.72  E-value=1.2e-08  Score=87.58  Aligned_cols=65  Identities=20%  Similarity=0.249  Sum_probs=57.4

Q ss_pred             CCCHHHHH---HHhhccCCeeEEEEccCC--------CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcc
Q psy3926         426 VYTRESLT---KIFSKYGKINILVISPKK--------RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE  490 (512)
Q Consensus       426 ~~te~~L~---~iFs~fG~I~~V~i~~~k--------kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~  490 (512)
                      .+|+++|+   ++|++||.|.+|.|..++        +|+|||+|.+.++|.+||.  ++..+.+.+|.|.|+.+++.
T Consensus        26 ~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~~  103 (111)
T 2cpi_A           26 RLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYC  103 (111)
T ss_dssp             TTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCSC
T ss_pred             CCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecccccc
Confidence            58999999   999999999999998643        3899999999999999997  46667889999999988764

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=98.71  E-value=1.9e-08  Score=83.04  Aligned_cols=75  Identities=15%  Similarity=0.192  Sum_probs=61.8

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKL--YELGLPNCPLT  481 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~  481 (512)
                      ...++|-|.=     .+..+|+++|+++|+.||.|.+|.|..++    +|+|||+|.+.++|.+|+.  ++..+.+.+|.
T Consensus        14 ~~~~~l~v~n-----lp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   88 (95)
T 2ywk_A           14 EADRTVFVGN-----LEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN   88 (95)
T ss_dssp             TGGGEEEEEC-----CCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCEEEEEC-----CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence            3456677652     22369999999999999999999998754    7999999999999999997  46667789999


Q ss_pred             EEecCC
Q psy3926         482 LNYLNP  487 (512)
Q Consensus       482 V~wa~~  487 (512)
                      |.|+..
T Consensus        89 V~~a~~   94 (95)
T 2ywk_A           89 VSGPSS   94 (95)
T ss_dssp             EECCCC
T ss_pred             EEEcCC
Confidence            999863

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=98.71  E-value=2.7e-08  Score=89.83  Aligned_cols=68  Identities=21%  Similarity=0.278  Sum_probs=59.5

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      ..+|+++|+++|+.||.|.+|.|..+     .+|+|||+|.+.++|..|+.  ++..+.+.+|.|.|+.++.++.
T Consensus        80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~  154 (158)
T 2kn4_A           80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD  154 (158)
T ss_dssp             TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred             CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence            46999999999999999999999764     37999999999999999997  4677888999999998765543

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.71  E-value=2.4e-08  Score=82.32  Aligned_cols=75  Identities=28%  Similarity=0.317  Sum_probs=61.4

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCce
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPL  480 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL  480 (512)
                      ...++|-|.     +.+..+|+++|+++|+.||.|..|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|
T Consensus        13 ~~~~~l~v~-----nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l   87 (95)
T 2cqc_A           13 DPNCCLGVF-----GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI   87 (95)
T ss_dssp             CGGGCEEEE-----SCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred             CCCCEEEEE-----CCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence            345667764     122369999999999999999999987542     6899999999999999997  4666778999


Q ss_pred             EEEecCC
Q psy3926         481 TLNYLNP  487 (512)
Q Consensus       481 ~V~wa~~  487 (512)
                      .|.|+..
T Consensus        88 ~v~~a~~   94 (95)
T 2cqc_A           88 RVSGPSS   94 (95)
T ss_dssp             EEECCSC
T ss_pred             EEEecCC
Confidence            9999864

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=1.3e-08  Score=85.85  Aligned_cols=68  Identities=22%  Similarity=0.254  Sum_probs=58.8

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCCCcccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      ..+|+++|+++|+.||.|..|.|..++     +|+|||+|.+.++|.+|+.. +..+.+.+|.|.|+.++.++.
T Consensus        26 ~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~~~~~   99 (105)
T 2dh8_A           26 WSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQP   99 (105)
T ss_dssp             TTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCCSSCCT
T ss_pred             CCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccCCCCCC
Confidence            369999999999999999999998753     69999999999999999974 555678899999998776554

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=2.3e-08  Score=83.27  Aligned_cols=65  Identities=18%  Similarity=0.299  Sum_probs=56.0

Q ss_pred             CCCCHHHHHHHhhccCCee-EEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCc----eEEEecCCCc
Q psy3926         425 DVYTRESLTKIFSKYGKIN-ILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCP----LTLNYLNPDV  489 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~-~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~p----L~V~wa~~~~  489 (512)
                      ..+|+++|+++|+.||.|. +|.|+.++     +|+|||+|.+.++|.+|+.  ++..+.+.+    |.|.|+.+..
T Consensus        19 ~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~   95 (99)
T 2div_A           19 PYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYSG   95 (99)
T ss_dssp             TTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCS
T ss_pred             CCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCC
Confidence            4699999999999999999 99988653     6999999999999999997  355566777    9999998653

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=98.70  E-value=1.6e-08  Score=86.27  Aligned_cols=65  Identities=23%  Similarity=0.364  Sum_probs=56.4

Q ss_pred             CC-CCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcccc
Q psy3926         425 DV-YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~-~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      .. +|+++|+++|+.||.|.+|.|   .+|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.++.+..
T Consensus        37 ~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~  104 (110)
T 1wf1_A           37 TALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDR  104 (110)
T ss_dssp             CSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCSCC
T ss_pred             cccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCCCC
Confidence            35 899999999999999999999   57999999999999999996  4566778999999998654443

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=98.70  E-value=2.5e-08  Score=90.26  Aligned_cols=79  Identities=19%  Similarity=0.188  Sum_probs=64.8

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLT  481 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~  481 (512)
                      ..++|-|.=-     +..+|+++|+++|+.||.|..|.|+.++     +|+|||+|.+.++|.+||.  ++..+.+.+|.
T Consensus        38 ~~~~l~V~nl-----p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~  112 (156)
T 1h2v_Z           38 KSCTLYVGNL-----SFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR  112 (156)
T ss_dssp             TCCEEEEESC-----CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred             CCCEEEEeCC-----CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence            4567777522     2369999999999999999999997643     6999999999999999997  46667789999


Q ss_pred             EEecCCCcccc
Q psy3926         482 LNYLNPDVERE  492 (512)
Q Consensus       482 V~wa~~~~~r~  492 (512)
                      |.|+.++.++.
T Consensus       113 V~~a~~~~~~~  123 (156)
T 1h2v_Z          113 TDWDAGFKEGR  123 (156)
T ss_dssp             EEEESCCCTTC
T ss_pred             EEECCCCCCcC
Confidence            99998765544

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=98.70  E-value=2.7e-08  Score=88.81  Aligned_cols=79  Identities=20%  Similarity=0.244  Sum_probs=64.8

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLT  481 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~  481 (512)
                      ..++|-|.==     +..+|+++|+++|+.||.|..|.|..+     .+|+|||+|.+.++|.+|+.  ++..+.+.+|.
T Consensus        46 ~~~~l~V~nL-----p~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~  120 (135)
T 2lea_A           46 GMTSLKVDNL-----TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR  120 (135)
T ss_dssp             GCCCEEEECC-----CSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred             CCCEEEEeCC-----CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            4456777522     236899999999999999999999754     37999999999999999997  46778889999


Q ss_pred             EEecCCCcccc
Q psy3926         482 LNYLNPDVERE  492 (512)
Q Consensus       482 V~wa~~~~~r~  492 (512)
                      |.|+.+..++.
T Consensus       121 V~~a~~~~~~~  131 (135)
T 2lea_A          121 VQMARYGRPPD  131 (135)
T ss_dssp             EEECCCCCCCT
T ss_pred             EEECCCCCCCc
Confidence            99998765544

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.69  E-value=6.7e-08  Score=83.01  Aligned_cols=76  Identities=18%  Similarity=0.167  Sum_probs=61.2

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-hcCCCCCceE
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-ELGLPNCPLT  481 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~  481 (512)
                      ...++|-|.     +.+..+|+++|+++|+.||.|.+|.|+.++     +|+|||+|.+.++|.+|+.. +..+.+.+|.
T Consensus        15 ~~~~~l~V~-----nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~   89 (116)
T 2cqd_A           15 TTFTKIFVG-----GLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKAN   89 (116)
T ss_dssp             CSSSEEEEE-----CCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECE
T ss_pred             CCCCEEEEe-----CCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEE
Confidence            355667664     122369999999999999999999998753     79999999999999999974 2246678999


Q ss_pred             EEecCCC
Q psy3926         482 LNYLNPD  488 (512)
Q Consensus       482 V~wa~~~  488 (512)
                      |.|+.+.
T Consensus        90 V~~a~~~   96 (116)
T 2cqd_A           90 VNLAYLG   96 (116)
T ss_dssp             EEESTTT
T ss_pred             EEEcccC
Confidence            9999764

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.69  E-value=2.2e-08  Score=87.93  Aligned_cols=81  Identities=15%  Similarity=0.250  Sum_probs=62.0

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCC-----CCCce
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGL-----PNCPL  480 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~-----~~~pL  480 (512)
                      ..+++|-|+   +.+....+|+++|+++|++||.|.+|+|..+ +|+|||+|++.++|.+|+..  +..+     .+.||
T Consensus        23 ~pt~~L~V~---Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l   98 (114)
T 2cq2_A           23 YATQSLVVA---NGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL   98 (114)
T ss_dssp             SCCSEEEEE---TCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred             CCCCEEEEE---CCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence            345667776   2112235899999999999999999998764 79999999999999999974  3322     35789


Q ss_pred             EEEecCCCcccc
Q psy3926         481 TLNYLNPDVERE  492 (512)
Q Consensus       481 ~V~wa~~~~~r~  492 (512)
                      .|.|+..-|...
T Consensus        99 ~v~~a~~~p~~~  110 (114)
T 2cq2_A           99 YLNFVEKVQWSG  110 (114)
T ss_dssp             EEEEESCCCCSS
T ss_pred             EEEecccCcccC
Confidence            999998766544

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.69  E-value=1.3e-08  Score=84.04  Aligned_cols=77  Identities=19%  Similarity=0.204  Sum_probs=61.3

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCC-eeEEEEccCCCceEEEEEcCHHHHHHHHHh--h-cCCCCCceEEEe
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGK-INILVISPKKRGSALLEFEHADSARRAKLY--E-LGLPNCPLTLNY  484 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~-I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~-~~~~~~pL~V~w  484 (512)
                      ..++|-|.     +.+..+|+++|+++|+.||. |..+.+.  .+|+|||+|.+.++|.+|+..  + ..+.+.+|.|.|
T Consensus         7 ~~~~l~V~-----nLp~~~t~~~l~~~F~~~G~vv~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~   79 (93)
T 2cqh_A            7 GMNKLYIG-----NLSPAVTADDLRQLFGDRKLPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY   79 (93)
T ss_dssp             CCCCEEEE-----CCCTTCCHHHHHHHHHHTTCCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred             CCcEEEEe-----CCCCCCCHHHHHHHHHHcCCceEEEEEc--CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence            44556553     22246999999999999999 6666664  479999999999999999973  5 567889999999


Q ss_pred             cCCCcccc
Q psy3926         485 LNPDVERE  492 (512)
Q Consensus       485 a~~~~~r~  492 (512)
                      +.+++.+.
T Consensus        80 a~~~~~~~   87 (93)
T 2cqh_A           80 SVSKKLRS   87 (93)
T ss_dssp             CCCCCCCC
T ss_pred             ccCccccC
Confidence            99876664

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=98.69  E-value=4.2e-08  Score=81.93  Aligned_cols=73  Identities=19%  Similarity=0.317  Sum_probs=59.9

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeE--------EEEccCC-----CceEEEEEcCHHHHHHHHH--hhc
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINI--------LVISPKK-----RGSALLEFEHADSARRAKL--YEL  473 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~--------V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~  473 (512)
                      ...+|-|.     +....+|+++|+++|+.||.|..        |.|..++     +|+|||+|.+.++|.+|+.  ++.
T Consensus        12 ~~~~l~V~-----nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~   86 (99)
T 2la6_A           12 DNNTIFVQ-----GLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK   86 (99)
T ss_dssp             CCSEEEEE-----CCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred             CCCEEEEe-----CCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence            44556553     12246999999999999999999        8887653     7999999999999999997  577


Q ss_pred             CCCCCceEEEecC
Q psy3926         474 GLPNCPLTLNYLN  486 (512)
Q Consensus       474 ~~~~~pL~V~wa~  486 (512)
                      .+.+.+|.|.||.
T Consensus        87 ~~~g~~l~V~~A~   99 (99)
T 2la6_A           87 EFSGNPIKVSFAT   99 (99)
T ss_dssp             BSSSSBCEEEECC
T ss_pred             EeCCcEEEEEecC
Confidence            7888999999984

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.68  E-value=3.3e-08  Score=83.30  Aligned_cols=78  Identities=21%  Similarity=0.222  Sum_probs=62.3

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC------CceEEEEEcCHHHHHHHHH-hhcCCCCCceE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK------RGSALLEFEHADSARRAKL-YELGLPNCPLT  481 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k------kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~  481 (512)
                      ..++|-|.-     .+..+|+++|+++|+.|| |.+|.|..++      +|+|||+|.+.++|.+|+. ++..+.+.+|.
T Consensus        14 ~~~~l~V~n-----lp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~   87 (104)
T 1wi8_A           14 PPYTAFLGN-----LPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIR   87 (104)
T ss_dssp             SCEEEEEES-----CCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECE
T ss_pred             CCCEEEEeC-----CCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEE
Confidence            445666652     223699999999999999 9999988542      7899999999999999994 24556788999


Q ss_pred             EEecCCCcccc
Q psy3926         482 LNYLNPDVERE  492 (512)
Q Consensus       482 V~wa~~~~~r~  492 (512)
                      |.|+.+++.+.
T Consensus        88 V~~a~~~~~~~   98 (104)
T 1wi8_A           88 VDVADQAQDKD   98 (104)
T ss_dssp             EEECCCCCCCC
T ss_pred             EEEccCCCCCC
Confidence            99998876554

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=98.68  E-value=3e-08  Score=84.98  Aligned_cols=66  Identities=27%  Similarity=0.370  Sum_probs=57.7

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC--CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK--KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE  490 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~--kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~  490 (512)
                      ..+|+++|+++|+.||.|.+|.|..+  .+|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.++..
T Consensus        18 ~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~   87 (115)
T 3lqv_A           18 YKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRA   87 (115)
T ss_dssp             TTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHH
T ss_pred             CCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChh
Confidence            36999999999999999999998754  37999999999999999997  46777889999999986443

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=98.68  E-value=1.4e-08  Score=83.07  Aligned_cols=65  Identities=17%  Similarity=0.266  Sum_probs=53.5

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r  491 (512)
                      .+|+++|+++|+.||.|.+|.|..+     .+|+|||+|.+.+ |..|+.  ++..+.+.+|.|.||.+++..
T Consensus        12 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~~   83 (90)
T 2ki2_A           12 SATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKSL   83 (90)
T ss_dssp             TSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC------
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCCC
Confidence            6899999999999999999999854     3799999999999 999997  467788899999999875443

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=98.68  E-value=2.6e-08  Score=81.04  Aligned_cols=72  Identities=17%  Similarity=0.181  Sum_probs=58.0

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-hcCCCCCceEE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-ELGLPNCPLTL  482 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V  482 (512)
                      ..++|-|. +    .+..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.. +..+.+.+|.|
T Consensus        10 ~~~~l~V~-n----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v   84 (87)
T 3s7r_A           10 DAGKMFVG-G----LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDP   84 (87)
T ss_dssp             CTTEEEEE-C----CCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEE
T ss_pred             CCCEEEEe-C----CCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEE
Confidence            44566663 1    22368999999999999999999987643     79999999999999999974 44467789999


Q ss_pred             Eec
Q psy3926         483 NYL  485 (512)
Q Consensus       483 ~wa  485 (512)
                      +||
T Consensus        85 ~~A   87 (87)
T 3s7r_A           85 KKA   87 (87)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            986

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.68  E-value=4.5e-08  Score=83.70  Aligned_cols=64  Identities=16%  Similarity=0.256  Sum_probs=54.9

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHHh--hcCC--------CCCceEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKLY--ELGL--------PNCPLTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~~--~~~~--------~~~pL~V~wa~~~  488 (512)
                      ..+|+++|+++|+.||.|.+|.|..++    +|+|||+|.+.++|.+|+..  +..+        .+.||.|.|+.++
T Consensus        35 ~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~  112 (114)
T 1x5o_A           35 LSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPS  112 (114)
T ss_dssp             TTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred             CCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCC
Confidence            369999999999999999999988653    68999999999999999973  4444        5689999999854

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.67  E-value=2.7e-08  Score=84.99  Aligned_cols=80  Identities=18%  Similarity=0.263  Sum_probs=65.1

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCee--------EEEEccCC-----CceEEEEEcCHHHHHHHHH--hh
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKIN--------ILVISPKK-----RGSALLEFEHADSARRAKL--YE  472 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~--------~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~  472 (512)
                      ...++|-|.=     .+..+|+++|+++|+.||.|.        .|.|..++     +|+|||+|.+.++|.+|+.  ++
T Consensus        13 ~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g   87 (113)
T 2cpe_A           13 SDNSAIYVQG-----LNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG   87 (113)
T ss_dssp             CCCCEEEEEC-----CCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred             CCCCEEEEcC-----CCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence            3456676652     223699999999999999998        58887653     7999999999999999997  56


Q ss_pred             cCCCCCceEEEecCCCcccc
Q psy3926         473 LGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       473 ~~~~~~pL~V~wa~~~~~r~  492 (512)
                      ..+.+.+|.|.|+.+++++.
T Consensus        88 ~~~~g~~l~V~~a~~~~~~~  107 (113)
T 2cpe_A           88 KDFQGSKLKVSLARKKPPMN  107 (113)
T ss_dssp             CEETTEECEEECSSCCCCST
T ss_pred             CccCCCEEEEEECCCCCCCC
Confidence            67788999999999877654

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=98.67  E-value=2.7e-08  Score=83.87  Aligned_cols=63  Identities=21%  Similarity=0.213  Sum_probs=55.4

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCC-CceEEEecCCC
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPN-CPLTLNYLNPD  488 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~-~pL~V~wa~~~  488 (512)
                      .++++.|+++|++||.|.+|.|+.++     +|+|||+|.+.++|.+||.  ++..+.+ .+|.|.|+.+.
T Consensus        23 ~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~   93 (100)
T 3ns6_A           23 PVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDV   93 (100)
T ss_dssp             HHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred             HHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchh
Confidence            57899999999999999999998543     7999999999999999996  4677777 99999999653

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.67  E-value=2.7e-08  Score=78.85  Aligned_cols=61  Identities=15%  Similarity=0.229  Sum_probs=54.1

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEec
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYL  485 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa  485 (512)
                      ..+|+++|+++|++||.|.+|.|..++     +|+|||+|.+.++|.+|+.. +..+.+.+|.|.||
T Consensus        10 ~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a   76 (77)
T 1uaw_A           10 WQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA   76 (77)
T ss_dssp             SSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred             CCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence            468999999999999999999987653     79999999999999999973 46777899999997

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=98.67  E-value=1.8e-08  Score=83.57  Aligned_cols=79  Identities=25%  Similarity=0.388  Sum_probs=64.0

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHH----HHhhccCCeeEEEEcc--CCCceEEEEEcCHHHHHHHHH--hhcCCCCCce
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLT----KIFSKYGKINILVISP--KKRGSALLEFEHADSARRAKL--YELGLPNCPL  480 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~----~iFs~fG~I~~V~i~~--~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL  480 (512)
                      ..++|-|.=     .+..+|+++|+    ++|+.||.|.+|.|..  ..+|+|||+|.+.++|..|+.  ++..+.+.+|
T Consensus         7 ~~~~l~V~n-----Lp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l   81 (97)
T 1nu4_A            7 PNHTIYINN-----LNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM   81 (97)
T ss_dssp             CCSEEEEES-----CCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred             CCCEEEEeC-----CCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence            445666652     22369999999    9999999999999874  347999999999999999997  4666778999


Q ss_pred             EEEecCCCcccc
Q psy3926         481 TLNYLNPDVERE  492 (512)
Q Consensus       481 ~V~wa~~~~~r~  492 (512)
                      .|.|+.+++...
T Consensus        82 ~v~~a~~~~~~~   93 (97)
T 1nu4_A           82 RIQYAKTDSDII   93 (97)
T ss_dssp             EEEECSSCCTHH
T ss_pred             EEEEccCCCccc
Confidence            999999876653

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=98.67  E-value=2.9e-08  Score=87.59  Aligned_cols=78  Identities=14%  Similarity=0.184  Sum_probs=61.8

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeE--EEEccCC-----CceEEEEEcCHHHHHHHHHh--hc----CC
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINI--LVISPKK-----RGSALLEFEHADSARRAKLY--EL----GL  475 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~--V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~----~~  475 (512)
                      ..++|-|.=     .+..+|+++|+++|+.||.|..  |.|..++     +|+|||+|.+. +|.+|+..  +.    .+
T Consensus        22 ~~~~lfV~n-----L~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~   95 (131)
T 2m2b_A           22 ANDTIILRN-----LNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI   95 (131)
T ss_dssp             CCCEEEECS-----CCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred             CCCEEEEeC-----CCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence            445665541     2236899999999999999976  8887654     79999999999 99999974  55    67


Q ss_pred             CCCceEEEecCCCcccc
Q psy3926         476 PNCPLTLNYLNPDVERE  492 (512)
Q Consensus       476 ~~~pL~V~wa~~~~~r~  492 (512)
                      .+.+|.|.|+.+...+.
T Consensus        96 ~gr~l~V~~a~~~~~~~  112 (131)
T 2m2b_A           96 DGKTINVEFAKGSKRDM  112 (131)
T ss_dssp             GGCCCCCEECCCSCCCC
T ss_pred             CCEEEEEEECCCCCCCC
Confidence            78999999998765544

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=98.66  E-value=2.5e-08  Score=91.41  Aligned_cols=80  Identities=18%  Similarity=0.265  Sum_probs=63.1

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCce
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPL  480 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL  480 (512)
                      ...++|-|.=     .+..+|++.|+++|+.||.|..|.|..++     +|+|||+|.+.++|.+||.  ++..+.+.+|
T Consensus        70 ~~~~~l~V~n-----Lp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l  144 (165)
T 1rk8_A           70 VEGWILFVTS-----IHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI  144 (165)
T ss_dssp             C-CEEEEEES-----CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred             CCCCEEEEeC-----CCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence            3445666652     22369999999999999999999998753     7999999999999999997  4666788999


Q ss_pred             EEEecCCCcccc
Q psy3926         481 TLNYLNPDVERE  492 (512)
Q Consensus       481 ~V~wa~~~~~r~  492 (512)
                      .|.|+.+++++.
T Consensus       145 ~V~~a~~~~~~~  156 (165)
T 1rk8_A          145 QVDWCFVKGPKR  156 (165)
T ss_dssp             EEEESEECC---
T ss_pred             EEEEecCCCCCC
Confidence            999998776654

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.66  E-value=4.1e-08  Score=82.58  Aligned_cols=78  Identities=17%  Similarity=0.179  Sum_probs=62.2

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH-hhcCCCCCceEE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL-YELGLPNCPLTL  482 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V  482 (512)
                      ..++|-|.=     .+..+|+++|+++|+.|| |.+|.|..++     +|+|||+|.+.++|.+|+. ++..+.+.+|.|
T Consensus        14 ~~~~l~V~n-----Lp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V   87 (103)
T 2dng_A           14 PPYTAYVGN-----LPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRV   87 (103)
T ss_dssp             SCEEEEEES-----CCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEE
T ss_pred             CCeEEEEeC-----CCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEE
Confidence            445666641     223699999999999998 9999988654     7999999999999999994 245567789999


Q ss_pred             EecCCCcccc
Q psy3926         483 NYLNPDVERE  492 (512)
Q Consensus       483 ~wa~~~~~r~  492 (512)
                      .|+.+++.+.
T Consensus        88 ~~a~~~~~~~   97 (103)
T 2dng_A           88 DIAEGRKQDK   97 (103)
T ss_dssp             EECCCCCCCC
T ss_pred             EEecCCCCCC
Confidence            9998866554

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=98.66  E-value=2.2e-08  Score=84.20  Aligned_cols=75  Identities=21%  Similarity=0.216  Sum_probs=60.0

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC------CceEEEEEcCHHHHHHHHH-hhcCCCCCceE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK------RGSALLEFEHADSARRAKL-YELGLPNCPLT  481 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k------kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~  481 (512)
                      ..++|-|.     +....+|+++|+++|+.|| |.+|.|..++      +|+|||+|.+.++|.+|+. ++..+.+.+|.
T Consensus        18 ~~~~l~V~-----nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~   91 (100)
T 2j76_E           18 PPYTAFLG-----NLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIR   91 (100)
T ss_dssp             --CEEEES-----CCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCC
T ss_pred             CCcEEEEe-----CCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEE
Confidence            44566654     1223689999999999999 9999997654      7999999999999999995 35667789999


Q ss_pred             EEecCCCc
Q psy3926         482 LNYLNPDV  489 (512)
Q Consensus       482 V~wa~~~~  489 (512)
                      |.|+.+..
T Consensus        92 V~~a~~~~   99 (100)
T 2j76_E           92 VDVADQAQ   99 (100)
T ss_dssp             CEECCCSC
T ss_pred             EEeccCCC
Confidence            99998754

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=98.65  E-value=5.3e-08  Score=84.74  Aligned_cols=77  Identities=14%  Similarity=0.264  Sum_probs=62.8

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKL--YELGLPNCPLTL  482 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V  482 (512)
                      ..++|-|.=     ....+|+++|+++|+.||.|.+|.|..+    .+|+|||+|.+.++|.+|+.  ++..+.+.+|.|
T Consensus        34 ~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V  108 (124)
T 2kt5_A           34 TGAKLLVSN-----LDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI  108 (124)
T ss_dssp             SCEEEEEES-----CCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred             CCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence            335566641     2236999999999999999999999865    47999999999999999997  467778899999


Q ss_pred             EecCCCcc
Q psy3926         483 NYLNPDVE  490 (512)
Q Consensus       483 ~wa~~~~~  490 (512)
                      .|+.+...
T Consensus       109 ~~a~~~~~  116 (124)
T 2kt5_A          109 QLVASQID  116 (124)
T ss_dssp             EEECCTTC
T ss_pred             EEeCCCCC
Confidence            99976543

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.64  E-value=6.7e-08  Score=80.69  Aligned_cols=75  Identities=19%  Similarity=0.175  Sum_probs=61.3

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhcc--CCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEe
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKY--GKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNY  484 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~f--G~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~w  484 (512)
                      ..++|-|.=     .+..+|+++|+++|+.|  |.|..|.+.   +|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|
T Consensus        14 ~~~~l~V~n-----Lp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~   85 (99)
T 2cpd_A           14 SVKILYVRN-----LMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL   85 (99)
T ss_dssp             CCCEEEEES-----CCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred             CcCEEEEeC-----CCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence            445666651     22369999999999999  999999875   6899999999999999997  46667789999999


Q ss_pred             cCCCccc
Q psy3926         485 LNPDVER  491 (512)
Q Consensus       485 a~~~~~r  491 (512)
                      +.++..+
T Consensus        86 a~~~~~~   92 (99)
T 2cpd_A           86 AKPVDKD   92 (99)
T ss_dssp             CCCCCCC
T ss_pred             CCCCCCC
Confidence            9876543

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=98.63  E-value=2.4e-08  Score=78.81  Aligned_cols=61  Identities=10%  Similarity=0.243  Sum_probs=53.1

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEec
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYL  485 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa  485 (512)
                      ..+|+++|+++|+.||.|.+|.|..+     .+|+|||+|.+.++|.+|+.. +..+.+.+|.|+||
T Consensus         9 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a   75 (75)
T 1iqt_A            9 PDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA   75 (75)
T ss_dssp             SSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred             CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence            46899999999999999999998754     379999999999999999974 45567788999886

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.63  E-value=1.1e-08  Score=87.69  Aligned_cols=77  Identities=19%  Similarity=0.151  Sum_probs=62.2

Q ss_pred             ceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEe
Q psy3926         411 YRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL-YELGLPNCPLTLNY  484 (512)
Q Consensus       411 ~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~w  484 (512)
                      ++|-|.=     ....+|+++|+++|+.||.|.+|.|..+     .+|+|||+|.+.++|.+|+. ++..+.+.+|.|.|
T Consensus        26 ~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~  100 (114)
T 2cq4_A           26 RTVFCMQ-----LAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQA  100 (114)
T ss_dssp             TEEEEES-----CCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEE
T ss_pred             CEEEEeC-----CCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEe
Confidence            4666642     1236999999999999999999999853     37999999999999999994 35667789999999


Q ss_pred             cCCCcccc
Q psy3926         485 LNPDVERE  492 (512)
Q Consensus       485 a~~~~~r~  492 (512)
                      +.+++.+.
T Consensus       101 a~~~~~~~  108 (114)
T 2cq4_A          101 SQAEKNRL  108 (114)
T ss_dssp             HHHHHHHH
T ss_pred             cCCCccCC
Confidence            98765543

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.63  E-value=5.7e-08  Score=83.08  Aligned_cols=80  Identities=18%  Similarity=0.243  Sum_probs=62.3

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCe----eEEEEcc-CCCceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKI----NILVISP-KKRGSALLEFEHADSARRAKL--YELGLPNCPLT  481 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I----~~V~i~~-~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~  481 (512)
                      ..++|-|. +    .+..+|+++|+++|+.||.|    ..+.+.. ..+|+|||+|.+.++|.+|+.  ++..+.+.+|.
T Consensus        24 ~~~~l~V~-n----Lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~   98 (115)
T 2cpx_A           24 PNKVLYLK-N----LSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV   98 (115)
T ss_dssp             CCSEEEEE-C----CCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred             CCCEEEEe-C----CCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence            34566554 1    22369999999999999999    4444443 448999999999999999997  46777889999


Q ss_pred             EEecCCCccccc
Q psy3926         482 LNYLNPDVEREE  493 (512)
Q Consensus       482 V~wa~~~~~r~~  493 (512)
                      |.|+.++..+..
T Consensus        99 v~~a~~~~~~~~  110 (115)
T 2cpx_A           99 IEFGKNKKQRSS  110 (115)
T ss_dssp             EEECCCCSCCCC
T ss_pred             EEEccCCCCCCC
Confidence            999998766543

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=98.63  E-value=5.2e-08  Score=82.29  Aligned_cols=74  Identities=15%  Similarity=0.270  Sum_probs=61.1

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKL--YELGLPNCPLT  481 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~  481 (512)
                      ...++|-|. +    .+..+|+++|+++|+.||.|.+|.|..++    +|+|||+|.+.++|.+|+.  ++..+.+.+|.
T Consensus        27 ~~~~~l~V~-n----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~  101 (107)
T 3ulh_A           27 ETGGKLLVS-N----LDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN  101 (107)
T ss_dssp             CCSEEEEEE-S----CCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCEEEEe-C----CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence            345667665 1    22369999999999999999999988643    7899999999999999998  56777889999


Q ss_pred             EEecC
Q psy3926         482 LNYLN  486 (512)
Q Consensus       482 V~wa~  486 (512)
                      |.|+.
T Consensus       102 V~~a~  106 (107)
T 3ulh_A          102 IQLVT  106 (107)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99985

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.63  E-value=9.6e-08  Score=79.05  Aligned_cols=63  Identities=19%  Similarity=0.326  Sum_probs=55.4

Q ss_pred             CCCHHHHHHHhhccCCeeEE-EEccC-CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926         426 VYTRESLTKIFSKYGKINIL-VISPK-KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V-~i~~~-kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~  488 (512)
                      .+|+++|+++|+.||.|.+| .|..+ ..|.|||+|.+.++|..|+.  ++..+.+.+|.|.|+.++
T Consensus        26 ~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~   92 (96)
T 2e44_A           26 HLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE   92 (96)
T ss_dssp             SSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence            68999999999999999999 46665 35679999999999999997  467778899999999876

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=98.63  E-value=3e-08  Score=85.33  Aligned_cols=73  Identities=19%  Similarity=0.221  Sum_probs=59.0

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hcCCCCCceE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY--ELGLPNCPLT  481 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~  481 (512)
                      ..++|-|.     +....+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+..  +..+.+.+|.
T Consensus        39 ~~~~l~V~-----nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~  113 (118)
T 2khc_A           39 EGCNLFIY-----HLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK  113 (118)
T ss_dssp             CSEEEEEE-----CSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred             CCCEEEEe-----CCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            34556553     222469999999999999999999998643     79999999999999999973  6667788999


Q ss_pred             EEecC
Q psy3926         482 LNYLN  486 (512)
Q Consensus       482 V~wa~  486 (512)
                      |.|++
T Consensus       114 V~~ak  118 (118)
T 2khc_A          114 VQLKK  118 (118)
T ss_dssp             EEEC-
T ss_pred             EEecC
Confidence            99984

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=98.62  E-value=1.3e-08  Score=85.44  Aligned_cols=69  Identities=12%  Similarity=0.202  Sum_probs=57.3

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHHhhcCCCCCceEEEecCCCccccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPDVEREE  493 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~~~~~~~~~pL~V~wa~~~~~r~~  493 (512)
                      ..+|+++|+++|+.||.|.+|.|..+    .+|+|||+|.+.++|.+|+.++..+.+.+|.|.|+.++.....
T Consensus        19 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~~~~~~~   91 (102)
T 2xs2_A           19 VRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIRKQNLST   91 (102)
T ss_dssp             TTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEECC----
T ss_pred             CCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCcCcchhh
Confidence            36999999999999999999998865    3799999999999999999855667788999999987655443

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=98.62  E-value=8.9e-08  Score=82.28  Aligned_cols=79  Identities=20%  Similarity=0.163  Sum_probs=60.2

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC------CCceEEEEEcCHHHHHHHHH--hhcCCCCCce
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK------KRGSALLEFEHADSARRAKL--YELGLPNCPL  480 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~------kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL  480 (512)
                      .+++|.|+=-..+..-..-++++|++.|++||.|.+|.|+.+      .+|+|||+|.+.++|.+|+.  ++..+.+.+|
T Consensus         7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i   86 (105)
T 2pe8_A            7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV   86 (105)
T ss_dssp             CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred             CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence            455666663332221123478999999999999999999864      27999999999999999997  4666788999


Q ss_pred             EEEecCC
Q psy3926         481 TLNYLNP  487 (512)
Q Consensus       481 ~V~wa~~  487 (512)
                      .|.|+.+
T Consensus        87 ~v~~a~~   93 (105)
T 2pe8_A           87 KACFYNL   93 (105)
T ss_dssp             EEEECCH
T ss_pred             EEEEcCH
Confidence            9999853

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.61  E-value=3.5e-08  Score=79.89  Aligned_cols=62  Identities=21%  Similarity=0.239  Sum_probs=53.5

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN  486 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~  486 (512)
                      ..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+..|+|.|++
T Consensus        15 ~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~   83 (85)
T 1x4e_A           15 PGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS   83 (85)
T ss_dssp             TTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred             CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence            369999999999999999999987653     7999999999999999997  4677777778877764

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.60  E-value=1.5e-07  Score=80.71  Aligned_cols=63  Identities=24%  Similarity=0.419  Sum_probs=53.7

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhh--hC--CCCCCcEEeecCCCc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYE--LG--LPNCPLTLNYLNPDV  101 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e--~g--~~~nPl~~~~l~~~~  101 (512)
                      +.+++.|+++|++||.|.+|.|.. .||.|+|||.+.++|..|+..-  .+  +-..||.|.|-.+..
T Consensus        26 ~~te~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~   92 (104)
T 1wex_A           26 SVVEADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR   92 (104)
T ss_dssp             SCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred             CCCHHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence            589999999999999999998765 4799999999999999999742  33  557899999987553

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=98.60  E-value=2.5e-07  Score=77.33  Aligned_cols=65  Identities=20%  Similarity=0.209  Sum_probs=56.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHH--hhhCCCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~--~e~g~~~nPl~~~~l~~~~~  102 (512)
                      ..|++.|+++|++||.|..|.|....+|.|+|+|.+.++|+.|+.  +..-+...+|+|.|-.+...
T Consensus        11 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~   77 (101)
T 2hvz_A           11 GAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR   77 (101)
T ss_dssp             SCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence            589999999999999999998876678999999999999999997  45556678999999986643

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=98.60  E-value=3.1e-08  Score=93.99  Aligned_cols=69  Identities=22%  Similarity=0.306  Sum_probs=60.0

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC---CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK---KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVEREE  493 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~---kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~~  493 (512)
                      ..+|+++|+++|+.||.|..|.|..+   .+|+|||+|.+.++|.+||.  ++..+.+.+|.|.|+.++.++..
T Consensus       113 ~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~~~~  186 (213)
T 4f02_A          113 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA  186 (213)
T ss_dssp             TTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHHHHHH
T ss_pred             cccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCcccch
Confidence            36999999999999999999998764   37999999999999999996  46777889999999998766543

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.59  E-value=5.1e-08  Score=83.85  Aligned_cols=84  Identities=19%  Similarity=0.148  Sum_probs=63.2

Q ss_pred             CCCcceeEEEeecCCCCC-C-----CCCHHHHHHHhhccCCeeEEEEcc-CCCceEEEEEcCHHHHHHHHH--hhcCCCC
Q psy3926         407 NPENYRLRIRWKSSSTDT-D-----VYTRESLTKIFSKYGKINILVISP-KKRGSALLEFEHADSARRAKL--YELGLPN  477 (512)
Q Consensus       407 ~~~~~~lkVKWk~~~~~~-~-----~~te~~L~~iFs~fG~I~~V~i~~-~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~  477 (512)
                      ....++|.|+--..+..- .     .-++++|+++|++||.|.+|.|.. ..+|+|||+|.+.++|.+|+.  ++..+.+
T Consensus        12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g   91 (112)
T 2dit_A           12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG   91 (112)
T ss_dssp             CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred             CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence            345677888765432210 0     013689999999999999998753 248999999999999999997  3556678


Q ss_pred             CceEEEecCCCcc
Q psy3926         478 CPLTLNYLNPDVE  490 (512)
Q Consensus       478 ~pL~V~wa~~~~~  490 (512)
                      .+|.|.|+.++..
T Consensus        92 r~l~v~~a~~~~~  104 (112)
T 2dit_A           92 RQITAQAWDGTTD  104 (112)
T ss_dssp             EECEEEECCSCCC
T ss_pred             cEEEEEEeCCCCC
Confidence            8999999977543

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.59  E-value=2.8e-08  Score=82.62  Aligned_cols=76  Identities=16%  Similarity=0.113  Sum_probs=60.0

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh--hcCCCCCceE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY--ELGLPNCPLT  481 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~  481 (512)
                      ..++|-|.=     .+..+|+++|+++|+.||.|..+.++.+     .+|+|||+|.+.++|.+|+..  +..+.+.+|.
T Consensus        14 ~~~~l~v~n-----Lp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~   88 (98)
T 2cqp_A           14 GPTIIKVQN-----MPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK   88 (98)
T ss_dssp             SSEEEEEES-----CCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECE
T ss_pred             CCCEEEEeC-----CCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence            445666642     2236999999999999999987665543     279999999999999999963  5667789999


Q ss_pred             EEecCCCc
Q psy3926         482 LNYLNPDV  489 (512)
Q Consensus       482 V~wa~~~~  489 (512)
                      |.|+.+++
T Consensus        89 V~~a~~~~   96 (98)
T 2cqp_A           89 LVLGSGPS   96 (98)
T ss_dssp             EEESSCSS
T ss_pred             EEEcCCCC
Confidence            99998654

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=98.57  E-value=5.3e-08  Score=82.66  Aligned_cols=61  Identities=26%  Similarity=0.329  Sum_probs=53.8

Q ss_pred             CHHHHHHHhhccCCeeEEEEcc---CCCceEEEEEcCHHHHHHHHH--hhcCCCCC-ceEEEecCCC
Q psy3926         428 TRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKL--YELGLPNC-PLTLNYLNPD  488 (512)
Q Consensus       428 te~~L~~iFs~fG~I~~V~i~~---~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~-pL~V~wa~~~  488 (512)
                      |++.|+++|+.||.|.+|.|..   ..+|+|||+|.+.++|.+|+.  ++..+.+. +|.|.|+.+.
T Consensus        34 t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~  100 (105)
T 2nlw_A           34 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF  100 (105)
T ss_dssp             HHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred             HHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence            7899999999999999999874   237999999999999999998  46777887 9999999754

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=98.56  E-value=5.7e-08  Score=80.43  Aligned_cols=78  Identities=17%  Similarity=0.190  Sum_probs=61.6

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN  486 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~  486 (512)
                      ..++|-|.--     +..+|+++|+++|+.||.|..|......+|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.
T Consensus        15 ~~~~l~V~nL-----~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   89 (96)
T 1fjc_A           15 AARTLLAKNL-----SFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG   89 (96)
T ss_dssp             GGGEEEEESC-----CSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred             CCCEEEEeCC-----CCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence            4456766522     23689999999999999998773223458999999999999999997  4566788999999998


Q ss_pred             CCccc
Q psy3926         487 PDVER  491 (512)
Q Consensus       487 ~~~~r  491 (512)
                      ++..+
T Consensus        90 ~~~~~   94 (96)
T 1fjc_A           90 EKGGT   94 (96)
T ss_dssp             SSCCC
T ss_pred             CCCCC
Confidence            76654

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=98.55  E-value=2e-07  Score=80.62  Aligned_cols=62  Identities=11%  Similarity=0.149  Sum_probs=51.9

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCc-----eEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCP-----LTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~p-----L~V~wa~~~  488 (512)
                      ..+|+++|+++|+.||.|..|.|..+  |+|||+|++.++|.+||.  ++..+.+.+     +.|....+.
T Consensus        26 ~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~   94 (115)
T 3beg_B           26 PSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR   94 (115)
T ss_dssp             SSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC--
T ss_pred             CCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCC
Confidence            36899999999999999999999876  999999999999999997  356667777     666666553

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=98.54  E-value=1e-07  Score=83.84  Aligned_cols=72  Identities=25%  Similarity=0.260  Sum_probs=58.7

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLT  481 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~  481 (512)
                      ..++|-|.     +.+..+|+++|+++|+.||.|..|.|..+     .+|+|||+|.+.++|.+|+.  ++..+.+.+|.
T Consensus        62 ~~~~l~v~-----nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~  136 (140)
T 2ku7_A           62 TKRVLYVG-----GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR  136 (140)
T ss_dssp             SCCEEEEE-----CCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred             CCcEEEEE-----eCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            44566664     22246999999999999999999998764     37999999999999999996  45667789999


Q ss_pred             EEec
Q psy3926         482 LNYL  485 (512)
Q Consensus       482 V~wa  485 (512)
                      |.||
T Consensus       137 v~~A  140 (140)
T 2ku7_A          137 VNLA  140 (140)
T ss_dssp             EEC-
T ss_pred             EEeC
Confidence            9986

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=98.54  E-value=9.8e-08  Score=93.99  Aligned_cols=63  Identities=19%  Similarity=0.294  Sum_probs=51.9

Q ss_pred             CHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCC------------CCCceEEEecCCCccc
Q psy3926         428 TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGL------------PNCPLTLNYLNPDVER  491 (512)
Q Consensus       428 te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~------------~~~pL~V~wa~~~~~r  491 (512)
                      +|+.|+++|+.||.|++|.|+.. +|+|||+|.+.++|..|+..  +..+            .+.+|.|.||...|..
T Consensus       156 tEe~L~~~F~~fG~I~~v~v~~~-kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp  232 (240)
T 3u1l_A          156 IESRIRFVFSRLGDIDRIRYVES-KNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP  232 (240)
T ss_dssp             HHHHHHHHHHTTSCEEEEEEEGG-GTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred             cHHHHHHHHHccCCEEEEEEECC-CCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence            79999999999999999998864 89999999999999999973  5555            5679999999875543

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.52  E-value=4.1e-08  Score=84.58  Aligned_cols=79  Identities=16%  Similarity=0.130  Sum_probs=63.2

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCe-eEEEEccC----CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKI-NILVISPK----KRGSALLEFEHADSARRAKLY-ELGLPNCPLTL  482 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I-~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V  482 (512)
                      ..++|-|.-     .+-.+|+++|+++|+.||.| .+|.|+.+    .+|+|||+|.+.++|.+||.. +..+.+.+|.|
T Consensus        14 ~~~~l~V~n-----Lp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v   88 (114)
T 2cpy_A           14 AKVCAHITN-----IPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFV   88 (114)
T ss_dssp             CCCEEEEES-----CCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEE
T ss_pred             CccEEEEeC-----cCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEE
Confidence            445666642     22369999999999999999 88988754    489999999999999999974 45567789999


Q ss_pred             EecCCCcccc
Q psy3926         483 NYLNPDVERE  492 (512)
Q Consensus       483 ~wa~~~~~r~  492 (512)
                      .|+.++..+.
T Consensus        89 ~~a~~~~~~~   98 (114)
T 2cpy_A           89 HVVTLEDMRE   98 (114)
T ss_dssp             EEECHHHHHH
T ss_pred             EECCHHHHHH
Confidence            9998766554

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=98.52  E-value=5.3e-08  Score=81.49  Aligned_cols=68  Identities=16%  Similarity=0.079  Sum_probs=56.0

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEcc----CCCceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEecCCCcccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKL-YELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~----~kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      ..+|+++|+++|+.||.|..++|..    ..+|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.++..+.
T Consensus        27 ~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~~~   99 (101)
T 1fj7_A           27 PNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDGTR   99 (101)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSCCCCSS
T ss_pred             CCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCCCCCCC
Confidence            4699999999999999998833332    348999999999999999997 3566778999999998876653

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.52  E-value=1.9e-07  Score=77.31  Aligned_cols=67  Identities=13%  Similarity=0.135  Sum_probs=53.2

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL-YELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa~~~~~r  491 (512)
                      ..+|+++|+++|+.||.|.+|.+......+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.++...
T Consensus        18 ~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~~~~   85 (94)
T 2e5g_A           18 RGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQKEFQ   85 (94)
T ss_dssp             TTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCSCCC
T ss_pred             CCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcCCCC
Confidence            4699999999999999999984333222299999999999999997 345566789999999765443

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=98.51  E-value=2e-07  Score=86.37  Aligned_cols=64  Identities=22%  Similarity=0.275  Sum_probs=58.9

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~  489 (512)
                      .+|+++|+++|+.||.|.+|.|..+++|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.++.
T Consensus        15 ~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~   80 (198)
T 1qm9_A           15 RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN   80 (198)
T ss_dssp             SCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred             cCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence            589999999999999999999999889999999999999999996  4677888999999998653

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.51  E-value=3.2e-07  Score=77.64  Aligned_cols=67  Identities=13%  Similarity=0.158  Sum_probs=55.7

Q ss_pred             CCCCHHHHHHHhhccCCeeE-EEEccC----CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGKINI-LVISPK----KRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~-V~i~~~----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~~~~r  491 (512)
                      -..|+++|+++|+.||.|.+ |.|+.+    .+|+|||+|.+.++|.+|+.. +..+.+.+|.|.++..+...
T Consensus        25 ~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~~~~~   97 (104)
T 1wg5_A           25 FGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVR   97 (104)
T ss_dssp             TTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTTTSC
T ss_pred             CCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCHHHHH
Confidence            46899999999999999987 777643    379999999999999999974 55667789999998765433

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.50  E-value=1.4e-07  Score=81.60  Aligned_cols=65  Identities=17%  Similarity=0.275  Sum_probs=54.1

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC----CCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG----LPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g----~~~nPl~~~~l~~~~~~  103 (512)
                      ..|++.|+++|++||.|.+|.|... ||.|+|||++.++|+.|+..-.|    +-..||.|.|-.+....
T Consensus        27 ~vte~dL~~lF~~fG~V~~v~i~~~-kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~   95 (105)
T 1sjq_A           27 DVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK   95 (105)
T ss_dssp             TSCHHHHHHHHHHHCCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCC
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCC
Confidence            5899999999999999999987654 79999999999999999974333    34679999998765443

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.49  E-value=1.6e-07  Score=80.25  Aligned_cols=64  Identities=20%  Similarity=0.309  Sum_probs=53.9

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhC--CCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELG--LPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g--~~~nPl~~~~l~~~~~  102 (512)
                      ..+++.|+.+|++||.|.+|.|... ||.|+|||++.++|..|+..  ..|  +-..||.|.|-.+...
T Consensus        26 ~~te~~L~~~F~~fG~v~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~   93 (101)
T 2cq1_A           26 EVTETEVIALGLPFGKVTNILMLKG-KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKEL   93 (101)
T ss_dssp             TCCHHHHHHTTTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSC
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccC
Confidence            5899999999999999999987654 89999999999999999973  233  4567999999875533

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=98.49  E-value=1.1e-07  Score=87.19  Aligned_cols=64  Identities=13%  Similarity=0.094  Sum_probs=56.7

Q ss_pred             CCCCHHHHHHHhhccC--CeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYG--KINILVISPKK-----RGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG--~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~  488 (512)
                      ..+|+++|+++|+.||  .|.+|.|..++     +|+|||+|.+.++|.+||..  +..+.+.+|.|.|+.+.
T Consensus        65 ~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~  137 (156)
T 3n9u_C           65 WWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ  137 (156)
T ss_dssp             TTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred             CCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence            4699999999999999  99999987653     79999999999999999974  67778899999999764

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=1.7e-07  Score=78.39  Aligned_cols=76  Identities=22%  Similarity=0.256  Sum_probs=59.4

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEcc----CCCceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKL--YELGLPNCPLT  481 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~----~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~  481 (512)
                      ...++|-|.=     .+..+|+++|+++|+.||.|   .|+.    ..+|+|||+|.+.++|.+|+.  ++..+.+.+|.
T Consensus        13 ~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   84 (101)
T 2fc9_A           13 GESKTLVLSN-----LSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR   84 (101)
T ss_dssp             CCCSEEEEES-----CCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred             CCCCEEEEeC-----CCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence            3456777752     22369999999999999988   3333    248999999999999999997  46667789999


Q ss_pred             EEecCCCccc
Q psy3926         482 LNYLNPDVER  491 (512)
Q Consensus       482 V~wa~~~~~r  491 (512)
                      |.|+.+++..
T Consensus        85 v~~a~~~~~~   94 (101)
T 2fc9_A           85 LELQGPRGSP   94 (101)
T ss_dssp             EEECSSCCCC
T ss_pred             EEEcCCCCCC
Confidence            9999876544

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.49  E-value=3.5e-07  Score=76.03  Aligned_cols=63  Identities=19%  Similarity=0.285  Sum_probs=53.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CC--CCCcEEeecCCCc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LP--NCPLTLNYLNPDV  101 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~--~nPl~~~~l~~~~  101 (512)
                      ..+++.|+++|++||.|.+|.|... +|.|+|+|.+.++|..|+..-.|  +.  ..+|+|.|-.+..
T Consensus        28 ~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~   94 (97)
T 1why_A           28 NTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP   94 (97)
T ss_dssp             SCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred             CCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence            5899999999999999999988765 89999999999999999974333  33  5799999987663

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=98.49  E-value=1.2e-07  Score=76.47  Aligned_cols=55  Identities=27%  Similarity=0.358  Sum_probs=47.4

Q ss_pred             CHHHHHHHhhccCCeeEEEEcc---CCCceEEEEEcCHHHHHHHHH--hhcCCCCC-ceEE
Q psy3926         428 TRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKL--YELGLPNC-PLTL  482 (512)
Q Consensus       428 te~~L~~iFs~fG~I~~V~i~~---~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~-pL~V  482 (512)
                      |+++|+++|++||.|.+|.|..   ..+|+|||+|.+.++|.+|+.  ++..+.+. +|.|
T Consensus        20 t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V   80 (81)
T 2krb_A           20 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV   80 (81)
T ss_dssp             HHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred             HHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence            7899999999999999999874   247999999999999999997  46666677 7766

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=98.49  E-value=1.4e-07  Score=81.08  Aligned_cols=59  Identities=22%  Similarity=0.310  Sum_probs=51.7

Q ss_pred             HHHHHHHhhccCCeeEEEEccC-------CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCC
Q psy3926         429 RESLTKIFSKYGKINILVISPK-------KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNP  487 (512)
Q Consensus       429 e~~L~~iFs~fG~I~~V~i~~~-------kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~  487 (512)
                      +++|++.|++||.|.+|.|+.+       .+|+|||+|++.++|.+|+.  ++..+.+.+|.|.|+..
T Consensus        29 ~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~   96 (105)
T 3v4m_A           29 VEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP   96 (105)
T ss_dssp             HHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred             HHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence            4789999999999999999864       37999999999999999997  46777889999999753

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=98.48  E-value=3.2e-07  Score=87.89  Aligned_cols=76  Identities=21%  Similarity=0.243  Sum_probs=64.9

Q ss_pred             CCcceeEEEeecCCCCCC-CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEe
Q psy3926         408 PENYRLRIRWKSSSTDTD-VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNY  484 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~-~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~w  484 (512)
                      ...++|-|.     +.+. .+|+++|+++|+.||.|.+|.|..+++|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|
T Consensus        32 ~~~~~l~V~-----nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~  106 (229)
T 2adc_A           32 AGNSVLLVS-----NLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL  106 (229)
T ss_dssp             CCCSEEEEE-----SCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred             CCCCEEEEe-----CCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence            355677775     1223 589999999999999999999999889999999999999999996  46777889999999


Q ss_pred             cCCC
Q psy3926         485 LNPD  488 (512)
Q Consensus       485 a~~~  488 (512)
                      +.+.
T Consensus       107 a~~~  110 (229)
T 2adc_A          107 SKHQ  110 (229)
T ss_dssp             CSCC
T ss_pred             ecCc
Confidence            9865

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=98.48  E-value=6.9e-07  Score=94.83  Aligned_cols=66  Identities=20%  Similarity=0.216  Sum_probs=57.7

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE  490 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~  490 (512)
                      ..+|++.|.++|+.||.|..|.|+.+     .+|+|||+|.+.++|.+||.  ++..+.+.+|.|.|+.+...
T Consensus       112 ~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~  184 (437)
T 3pgw_S          112 YDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTV  184 (437)
T ss_pred             CCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence            46999999999999999999988754     38999999999999999996  46777889999999987543

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=2.3e-07  Score=76.13  Aligned_cols=77  Identities=9%  Similarity=0.073  Sum_probs=61.3

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH-hhcCCCCCceEEE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKL-YELGLPNCPLTLN  483 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~  483 (512)
                      ..++|-|.=     .+..+|+++|+++|+.| .|.+|.|..+.    +|+|||+|.+.++|.+|+. ++..+.+.+|.|.
T Consensus         9 ~~~~l~v~n-----Lp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~   82 (91)
T 2dgw_A            9 TCHTVKLRG-----APFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVF   82 (91)
T ss_dssp             CCCEEEEEC-----CCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEE
T ss_pred             CccEEEEEC-----CCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEE
Confidence            445565542     22369999999999999 89999887642    7899999999999999997 3455677899999


Q ss_pred             ecCCCccc
Q psy3926         484 YLNPDVER  491 (512)
Q Consensus       484 wa~~~~~r  491 (512)
                      |+.+++..
T Consensus        83 ~a~~~~~s   90 (91)
T 2dgw_A           83 REKSGPSS   90 (91)
T ss_dssp             EESSCCCC
T ss_pred             ECCcCCCC
Confidence            99887653

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.47  E-value=5.7e-07  Score=74.07  Aligned_cols=66  Identities=24%  Similarity=0.468  Sum_probs=55.4

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|..|+..  ..-+...+|+|.|..+....
T Consensus        16 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~   88 (95)
T 2dnz_A           16 NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDG   88 (95)
T ss_dssp             TCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCCC
T ss_pred             CCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccCC
Confidence            589999999999999999998743     3479999999999999999973  33355789999999876544

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.47  E-value=3.4e-07  Score=81.34  Aligned_cols=62  Identities=31%  Similarity=0.475  Sum_probs=52.7

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCc-eEEEEeccHHHHHHHHHhhhCCC----CCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRG-SALLEFEHADSARRAKLYELGLP----NCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g-~A~vef~~~~aa~~a~~~e~g~~----~nPl~~~~l~~~  100 (512)
                      .-+++.|+++|++||.|..|+|-.+ .| .|+|||.+.++|..|+..--|..    .++|.|.|-.+.
T Consensus        36 ~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~  102 (124)
T 2e5i_A           36 PITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT  102 (124)
T ss_dssp             CCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence            4789999999999999999988654 59 59999999999999998766653    258999998766

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=98.46  E-value=1.6e-07  Score=80.35  Aligned_cols=55  Identities=15%  Similarity=0.303  Sum_probs=46.4

Q ss_pred             HHHHHh-hccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEec
Q psy3926         431 SLTKIF-SKYGKINILVISPKK----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYL  485 (512)
Q Consensus       431 ~L~~iF-s~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa  485 (512)
                      +|++.| ++||.|.+|.|+.++    +|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+
T Consensus        42 dl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s  103 (104)
T 1jmt_A           42 EVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS  103 (104)
T ss_dssp             HHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred             HHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence            344444 999999999998754    8999999999999999997  466677889999986

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=6.9e-07  Score=73.20  Aligned_cols=63  Identities=16%  Similarity=0.195  Sum_probs=54.5

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|.   +|.|+|+|.+.++|..|+..-.|  +-..+|+|.|-.+....
T Consensus        19 ~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~   83 (90)
T 2dnq_A           19 EATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA   83 (90)
T ss_dssp             SCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred             CCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence            58999999999999999999886   79999999999999999965333  56789999999876554

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.45  E-value=2e-07  Score=81.54  Aligned_cols=61  Identities=16%  Similarity=0.277  Sum_probs=52.4

Q ss_pred             CCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhC--CCCCCcEEeecCCC
Q psy3926          39 YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        39 Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g--~~~nPl~~~~l~~~  100 (512)
                      .+++.|+.+|++||.|.+|.|. +.||.|+|||.+.++|..|+..  ..|  +-..||.|.|-.+.
T Consensus        38 ~te~~L~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~  102 (112)
T 1x4f_A           38 YSDSAVLKLAEPYGKIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY  102 (112)
T ss_dssp             CCSHHHHTTTTTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred             CCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccc
Confidence            8999999999999999999875 4579999999999999999973  334  56789999997644

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=98.44  E-value=3.7e-07  Score=85.27  Aligned_cols=65  Identities=15%  Similarity=0.309  Sum_probs=57.4

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~  489 (512)
                      ..+|+++|+++|+.||.|..|.|..+    .+|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+....
T Consensus        98 ~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~  168 (177)
T 2f3j_A           98 FGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI  168 (177)
T ss_dssp             SCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGG
T ss_pred             CCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence            36899999999999999999999864    37999999999999999998  4677788999999997643

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=98.44  E-value=1.2e-07  Score=78.12  Aligned_cols=72  Identities=17%  Similarity=0.159  Sum_probs=58.0

Q ss_pred             cceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEE
Q psy3926         410 NYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTL  482 (512)
Q Consensus       410 ~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V  482 (512)
                      .++|-|.--     +..+|+++|+++|+.||.|..+.+..+     .+|+|||+|.+.++|.+|+.  ++..+.+.+|.|
T Consensus        15 ~~~l~V~nl-----p~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v   89 (95)
T 2ek1_A           15 PTVIKVQNM-----PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL   89 (95)
T ss_dssp             CEEEEEECC-----CTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred             CCEEEEeCC-----CCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence            456666522     236999999999999999987766642     37999999999999999997  466778899999


Q ss_pred             EecC
Q psy3926         483 NYLN  486 (512)
Q Consensus       483 ~wa~  486 (512)
                      .++.
T Consensus        90 ~~a~   93 (95)
T 2ek1_A           90 SGPS   93 (95)
T ss_dssp             ECCC
T ss_pred             Eecc
Confidence            9875

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=98.44  E-value=8.3e-07  Score=76.88  Aligned_cols=66  Identities=21%  Similarity=0.274  Sum_probs=55.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHhh--hCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLYE--LGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e--~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|..    +.+|.|+|+|.+.++|+.|+..-  .-+-..+|+|.|-.++...
T Consensus        18 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~   89 (116)
T 2fy1_A           18 ETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQ   89 (116)
T ss_dssp             TCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSCS
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCCC
Confidence            589999999999999999998754    45799999999999999999742  3345689999999866544

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.44  E-value=1.2e-07  Score=77.52  Aligned_cols=65  Identities=20%  Similarity=0.284  Sum_probs=55.1

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCCCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~~~nPl~~~~l~~~~~  102 (512)
                      ..+++.|+++|++||.|.+|.|....+|.|+|+|.+.++|+.|.......-..+|.|.|-.|...
T Consensus        16 ~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~~~~   80 (88)
T 1wf0_A           16 DMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHN   80 (88)
T ss_dssp             SSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCCCC
T ss_pred             CCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCCCCC
Confidence            58999999999999999999987778999999999999999776655544567889998876544

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=5.1e-07  Score=76.95  Aligned_cols=64  Identities=23%  Similarity=0.246  Sum_probs=54.1

Q ss_pred             CCCCHHH----HHHHhhcc-CCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccccc
Q psy3926         425 DVYTRES----LTKIFSKY-GKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVEREE  493 (512)
Q Consensus       425 ~~~te~~----L~~iFs~f-G~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~~  493 (512)
                      ..++++.    |+++|++| |+|.+|+     .|+|||+|.+.++|.+|++  ++..+.+.||+|+||.....--.
T Consensus        19 ~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~~   89 (96)
T 2diu_A           19 ANKDGKSVSNRLRRLSDNCGGKVLSIT-----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELCE   89 (96)
T ss_dssp             TTSCHHHHHHHHHHHHHTTTCCEEECC-----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCCC
T ss_pred             CcCCHHHHHHHHHHHHHHcCCeeEEEe-----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcceeE
Confidence            4577777    66899999 5998883     2999999999999999997  47888999999999988766543

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=98.44  E-value=3.1e-07  Score=78.78  Aligned_cols=61  Identities=28%  Similarity=0.417  Sum_probs=51.3

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC----CCCCcEEeecCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGL----PNCPLTLNYLNP   99 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~----~~nPl~~~~l~~   99 (512)
                      +.|++.|+++|++||.|.+|.|.+ .||.|+|||.+.++|..|+..=.|.    -..||.|+|=.+
T Consensus        32 ~~te~~L~~lF~~fG~V~~v~i~~-~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~   96 (100)
T 3r27_A           32 GVVEADLVEALQEFGPISYVVVMP-KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS   96 (100)
T ss_dssp             TCCHHHHHHHHGGGSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred             CCCHHHHHHHHhccCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence            589999999999999999997754 5799999999999999999764443    367888888543

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=98.43  E-value=6.1e-07  Score=83.55  Aligned_cols=63  Identities=30%  Similarity=0.426  Sum_probs=53.3

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccC-CCceEEEEeccHHHHHHHHHhhhCCC----CCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPK-KRGSALLEFEHADSARRAKLYELGLP----NCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k-~~g~A~vef~~~~aa~~a~~~e~g~~----~nPl~~~~l~~~  100 (512)
                      ..|++.|+++|++||+|..|+|-.+ .+|.|+|||.+.++|+.|+..--|..    .++|+|+|-.+.
T Consensus        57 ~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~  124 (164)
T 1sjr_A           57 PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT  124 (164)
T ss_dssp             CCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence            5899999999999999999988544 47899999999999999998655532    278999998765

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=98.43  E-value=2e-07  Score=83.00  Aligned_cols=80  Identities=15%  Similarity=0.267  Sum_probs=60.4

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEE--------EEc--cCCCceEEEEEcCHHHHHHHHH--hhcCCC
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINIL--------VIS--PKKRGSALLEFEHADSARRAKL--YELGLP  476 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V--------~i~--~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~  476 (512)
                      ..++|-|.== .    ..+|+++|+++|+.||.|..+        .+.  ...+|+|||+|.+.++|.+|+.  ++..+.
T Consensus        44 ~~~~l~V~nL-p----~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~  118 (143)
T 3egn_A           44 PNCRIYVKNL-A----KHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF  118 (143)
T ss_dssp             CCSEEEEEEE-C----TTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred             CCCEEEEeCC-C----CCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence            4456655421 1    259999999999999999763        333  2458999999999999999997  467778


Q ss_pred             CCceEEEecCCCccccc
Q psy3926         477 NCPLTLNYLNPDVEREE  493 (512)
Q Consensus       477 ~~pL~V~wa~~~~~r~~  493 (512)
                      +.+|.|.|+.+..++..
T Consensus       119 g~~l~V~~a~~~~~~~~  135 (143)
T 3egn_A          119 GKPMVVQFARSARPKQD  135 (143)
T ss_dssp             TEECEEEECCCSCC---
T ss_pred             CcEEEEEECCCCCCccC
Confidence            89999999987655543

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=98.42  E-value=3.6e-07  Score=81.21  Aligned_cols=65  Identities=20%  Similarity=0.210  Sum_probs=56.9

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcc
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE  490 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~  490 (512)
                      .+|+++|+++|+.||.|.+|.|..++    +|+|||+|.+.++|..|+.  ++..+.+.+|.|.|+.+...
T Consensus        11 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~   81 (166)
T 3md3_A           11 AITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ   81 (166)
T ss_dssp             TCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC
T ss_pred             cCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC
Confidence            58999999999999999999997543    7999999999999999996  46667789999999976544

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.42  E-value=1.6e-07  Score=80.53  Aligned_cols=62  Identities=19%  Similarity=0.231  Sum_probs=52.4

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhC--CCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g--~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+.+|++||.|.+|.|-. .+|.|+|||++.++|..|+..  ..+  +-..||.|.|-.+.
T Consensus        27 ~~te~dL~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~   92 (102)
T 1x4d_A           27 KNLRYQLLQLVEPFGVISNHLILN-KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY   92 (102)
T ss_dssp             SSHHHHHHTTTGGGSCEEEEEECS-SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred             cCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence            479999999999999999998754 469999999999999999974  333  55779999998743

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=98.42  E-value=4.1e-07  Score=81.34  Aligned_cols=67  Identities=25%  Similarity=0.320  Sum_probs=58.1

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r  491 (512)
                      ..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|..|+.  ++..+.+.+|.|.|+.+....
T Consensus        13 ~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~   86 (168)
T 1b7f_A           13 QDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGES   86 (168)
T ss_dssp             TTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSST
T ss_pred             CCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCccc
Confidence            369999999999999999999988653     5899999999999999996  466677899999999876543

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=97.80  E-value=2.8e-08  Score=85.57  Aligned_cols=67  Identities=19%  Similarity=0.291  Sum_probs=58.3

Q ss_pred             CCCHHHHHHHhhccCCeeE--------EEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcc
Q psy3926         426 VYTRESLTKIFSKYGKINI--------LVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE  490 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~--------V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~  490 (512)
                      .+|+++|+++|+.||.|..        |.|..+     .+|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.+++.
T Consensus        18 ~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~   97 (116)
T 2lcw_A           18 NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRAD   97 (116)
Confidence            5899999999999999998        777654     37999999999999999997  46777889999999998766


Q ss_pred             cc
Q psy3926         491 RE  492 (512)
Q Consensus       491 r~  492 (512)
                      +.
T Consensus        98 ~~   99 (116)
T 2lcw_A           98 FN   99 (116)
Confidence            64

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.42  E-value=6.8e-07  Score=75.21  Aligned_cols=66  Identities=20%  Similarity=0.371  Sum_probs=55.1

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccC------CCceEEEEeccHHHHHHHHHh---hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPK------KRGSALLEFEHADSARRAKLY---ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k------~~g~A~vef~~~~aa~~a~~~---e~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|...      .+|.|+|+|.+.++|..|+..   ..-+...+|+|.|-.+....
T Consensus        26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~~  100 (107)
T 2cph_A           26 QANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTV  100 (107)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCCC
T ss_pred             cCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCCC
Confidence            5899999999999999999988554      489999999999999999964   23345679999999866443

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=98.42  E-value=2.3e-07  Score=81.14  Aligned_cols=79  Identities=9%  Similarity=0.053  Sum_probs=60.6

Q ss_pred             CcceeEEEeecCCCCC--C---CCCHHHHHHHhhccCCeeEEEEccCC-CceEEEEEcCHHHHHHHHH--hhcCCCCCce
Q psy3926         409 ENYRLRIRWKSSSTDT--D---VYTRESLTKIFSKYGKINILVISPKK-RGSALLEFEHADSARRAKL--YELGLPNCPL  480 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~--~---~~te~~L~~iFs~fG~I~~V~i~~~k-kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL  480 (512)
                      .++.|.|+=-..+...  .   .-.+++|++.|++||.|.+|.|..+. +|+|||+|.+.++|.+|++  ++..+.+.+|
T Consensus         6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i   85 (114)
T 3s6e_A            6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI   85 (114)
T ss_dssp             CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred             CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence            3445666544443321  1   12357889999999999999998764 8999999999999999997  4677788999


Q ss_pred             EEEecCC
Q psy3926         481 TLNYLNP  487 (512)
Q Consensus       481 ~V~wa~~  487 (512)
                      .|.|+..
T Consensus        86 ~v~~~~~   92 (114)
T 3s6e_A           86 TAAYVPL   92 (114)
T ss_dssp             EEEEECH
T ss_pred             EEEEEcH
Confidence            9999853

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=98.42  E-value=5.3e-07  Score=80.18  Aligned_cols=67  Identities=19%  Similarity=0.332  Sum_probs=58.4

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r  491 (512)
                      ..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.+....
T Consensus        12 ~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~   85 (167)
T 1fxl_A           12 QNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS   85 (167)
T ss_dssp             TTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGG
T ss_pred             CCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCccc
Confidence            368999999999999999999988654     5999999999999999997  466677899999999876544

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=98.42  E-value=3.5e-07  Score=82.06  Aligned_cols=63  Identities=30%  Similarity=0.426  Sum_probs=53.6

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCce-EEEEeccHHHHHHHHHhhhCCC----CCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGS-ALLEFEHADSARRAKLYELGLP----NCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~-A~vef~~~~aa~~a~~~e~g~~----~nPl~~~~l~~~  100 (512)
                      .-|++.|+++|++||.|..|+|-.+.+|- |+|||.+.++|..|+..=-|..    .++|+|.|-.+.
T Consensus        39 ~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~  106 (130)
T 3zzy_A           39 PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT  106 (130)
T ss_dssp             CCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred             CCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence            47999999999999999999887776776 9999999999999998655532    268999998755

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=98.41  E-value=3.2e-07  Score=74.24  Aligned_cols=64  Identities=27%  Similarity=0.367  Sum_probs=53.4

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc------CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP------KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDV  101 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~------k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~  101 (512)
                      ..+++.|+++|++||.|..+.|..      +.+|.|+|+|.+.++|..|+..  ..-+...+|+|+|..|+.
T Consensus        15 ~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~   86 (88)
T 4a8x_A           15 NVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPW   86 (88)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCCC
T ss_pred             CCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCCC
Confidence            589999999999999999997632      2689999999999999999973  333456789999987663

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.40  E-value=4e-07  Score=75.76  Aligned_cols=65  Identities=23%  Similarity=0.248  Sum_probs=54.6

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..|++.|+++|++||.|..|.|. +.+|.|+|+|.+.++|..|+..  ..-+...+|+|.|-.+....
T Consensus        24 ~~t~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~   90 (97)
T 1x5p_A           24 DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML   90 (97)
T ss_dssp             SCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCCC
T ss_pred             CCCHHHHHHHHhhCCCEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCCC
Confidence            48999999999999999999884 6689999999999999999963  33345678999998866444

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.40  E-value=4.8e-07  Score=79.86  Aligned_cols=65  Identities=17%  Similarity=0.298  Sum_probs=53.9

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhC--CCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELG--LPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g--~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|.+|.|... ||.|+|||.+.++|..|+..  ..|  +-..||.|.|-.+....
T Consensus        42 ~vte~dL~~lF~~fG~V~~v~i~~~-kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~  110 (119)
T 2ad9_A           42 DVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK  110 (119)
T ss_dssp             TCCHHHHHHHHTTTSCCCEEEEEGG-GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCC
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCC
Confidence            5899999999999999999977554 79999999999999999973  222  55679999998765443

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=98.39  E-value=3e-07  Score=89.27  Aligned_cols=64  Identities=19%  Similarity=0.127  Sum_probs=56.7

Q ss_pred             CCCCHHHHHHHhhccC--CeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYG--KINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG--~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~  488 (512)
                      -.+|+++|+++|+.||  .|.+|.|..++     +|+|||+|.+.++|.+||.  ++..+.+.+|.|.|+.+.
T Consensus        78 ~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~  150 (229)
T 3q2s_C           78 WWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQ  150 (229)
T ss_dssp             TTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHH
T ss_pred             CCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCC
Confidence            3699999999999999  99999987653     7999999999999999997  467788899999999754

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.39  E-value=8.8e-07  Score=73.71  Aligned_cols=66  Identities=18%  Similarity=0.279  Sum_probs=54.5

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|..|+.. ..-+...+|+|.|-.+....
T Consensus        21 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~~~~   92 (99)
T 2dgs_A           21 NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK   92 (99)
T ss_dssp             SCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCCCCCC
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCCCccc
Confidence            589999999999999999998743     3589999999999999999972 22344679999999876544

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.39  E-value=3.5e-07  Score=77.63  Aligned_cols=76  Identities=16%  Similarity=0.092  Sum_probs=59.6

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHHh-hcCCCCCceEEE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKLY-ELGLPNCPLTLN  483 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~  483 (512)
                      ..++|.|.--     +-..|+++|+++|+.||.| +|.|+.++    +|+|||+|.+.++|.+||.. ...+.+.+|.|.
T Consensus        14 ~~~~l~V~nL-----p~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~   87 (102)
T 1wez_A           14 TGHCVHMRGL-----PYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF   87 (102)
T ss_dssp             SSCEEEEESC-----CTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEE
T ss_pred             CCCEEEEeCC-----CCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEE
Confidence            4456766522     2368999999999999955 88887653    78999999999999999963 455667899999


Q ss_pred             ecCCCcc
Q psy3926         484 YLNPDVE  490 (512)
Q Consensus       484 wa~~~~~  490 (512)
                      ++.+++.
T Consensus        88 ~~~~~~~   94 (102)
T 1wez_A           88 LNSTAGT   94 (102)
T ss_dssp             EECCCCC
T ss_pred             ECCCCCC
Confidence            9876543

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=98.39  E-value=4.8e-07  Score=83.09  Aligned_cols=78  Identities=15%  Similarity=0.122  Sum_probs=60.7

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-hcCCCCCceEE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-ELGLPNCPLTL  482 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V  482 (512)
                      ..++|-|.     +.+..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.. +..+.+.+|.|
T Consensus        12 ~~~~l~V~-----nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v   86 (196)
T 1l3k_A           12 QLRKLFIG-----GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEP   86 (196)
T ss_dssp             GGGEEEEE-----SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEE
T ss_pred             CCCEEEEe-----CCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeee
Confidence            45667664     122369999999999999999999988643     78999999999999999975 34466789999


Q ss_pred             EecCCCccc
Q psy3926         483 NYLNPDVER  491 (512)
Q Consensus       483 ~wa~~~~~r  491 (512)
                      .|+.+....
T Consensus        87 ~~~~~~~~~   95 (196)
T 1l3k_A           87 KRAVSREDS   95 (196)
T ss_dssp             EECCC----
T ss_pred             ecccCcccc
Confidence            999875443

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.39  E-value=2.8e-07  Score=79.28  Aligned_cols=73  Identities=14%  Similarity=0.082  Sum_probs=55.2

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC--------CCceEEEEEcCHHHHHHHHHhhcCCCCCce
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK--------KRGSALLEFEHADSARRAKLYELGLPNCPL  480 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~--------kkg~A~V~F~s~~~A~~Ai~~~~~~~~~pL  480 (512)
                      ..++|-|.     +.+..+|+++|+++|++||.|. +.++.+        .+|+|||+|.+.++|.+||..-.++.+..|
T Consensus         7 ~~~~lfVg-----nLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~   80 (114)
T 2dnl_A            7 GSRKVFVG-----GLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY   80 (114)
T ss_dssp             CCCCEEEE-----CCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred             CCCEEEEc-----CCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence            34566664     1223699999999999999999 766642        379999999999999999986545566677


Q ss_pred             EEEecCC
Q psy3926         481 TLNYLNP  487 (512)
Q Consensus       481 ~V~wa~~  487 (512)
                      .|..+..
T Consensus        81 ~~~~~~~   87 (114)
T 2dnl_A           81 LCVSSPT   87 (114)
T ss_dssp             EEECCSS
T ss_pred             EeccCCC
Confidence            7766544

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=98.38  E-value=3.2e-07  Score=75.13  Aligned_cols=62  Identities=10%  Similarity=0.225  Sum_probs=54.5

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~  488 (512)
                      ..+|+++|+++|++| .|.+|.|. ..+|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+...
T Consensus        15 ~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~   78 (88)
T 1wg1_A           15 QDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD   78 (88)
T ss_dssp             SSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred             CCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence            469999999999999 99999885 568999999999999999997  466678899999999553

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=98.38  E-value=6.7e-07  Score=75.09  Aligned_cols=66  Identities=20%  Similarity=0.336  Sum_probs=54.5

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccC----CCceEEEEeccHHHHHHHHHhhhC--CCC---CCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKLYELG--LPN---CPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k----~~g~A~vef~~~~aa~~a~~~e~g--~~~---nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|...    .+|.|+|+|.+.++|..|+..-.|  +..   .||.|.|-.+...+
T Consensus        26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~~  100 (105)
T 2dnh_A           26 QQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKES  100 (105)
T ss_dssp             TCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCCC
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCccc
Confidence            5899999999999999999977543    379999999999999999975344  234   79999999876544

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=98.38  E-value=3.9e-07  Score=73.70  Aligned_cols=63  Identities=17%  Similarity=0.218  Sum_probs=51.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|.+|.|..     +.+|.|+|+|.+.++|+.|+..  ..-+-..+|+|.|-.+.
T Consensus        17 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k   86 (87)
T 3bs9_A           17 EITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK   86 (87)
T ss_dssp             TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred             CCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence            589999999999999999997744     3479999999999999999974  22345678999997654

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=98.37  E-value=1e-06  Score=82.06  Aligned_cols=77  Identities=16%  Similarity=0.173  Sum_probs=62.5

Q ss_pred             cceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEE
Q psy3926         410 NYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTL  482 (512)
Q Consensus       410 ~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V  482 (512)
                      .++|-|. +    .+..+|+++|+++|+.||.|.+|.|..+     .+|+|||+|.+.++|.+|+.  ++..+.+.+|.|
T Consensus        28 ~~~l~V~-n----Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v  102 (216)
T 2qfj_A           28 MSRVYVG-S----IYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV  102 (216)
T ss_dssp             HTEEEEE-C----CCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred             CCEEEEE-C----CCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence            3466664 2    2236999999999999999999999754     38999999999999999997  467788899999


Q ss_pred             EecCCCccc
Q psy3926         483 NYLNPDVER  491 (512)
Q Consensus       483 ~wa~~~~~r  491 (512)
                      .|+......
T Consensus       103 ~~~~~~~~~  111 (216)
T 2qfj_A          103 GRPSNIGQA  111 (216)
T ss_dssp             ECCSCCGGG
T ss_pred             ecCCCcccc
Confidence            998876543

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=98.36  E-value=6.9e-07  Score=74.30  Aligned_cols=62  Identities=26%  Similarity=0.336  Sum_probs=52.9

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~  102 (512)
                      ..+++.|+++|++||.|..|.|+   +|.|+|+|.+.++|..|+..-.|  +...+|+|.|-.+...
T Consensus        22 ~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~   85 (96)
T 2kvi_A           22 NVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR   85 (96)
T ss_dssp             CCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred             cCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence            48999999999999999999995   79999999999999999975333  3478999999875533

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=98.36  E-value=5.5e-07  Score=85.15  Aligned_cols=62  Identities=13%  Similarity=0.185  Sum_probs=54.3

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCC
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNP  487 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~  487 (512)
                      ..|++.|+++|+.||.|.+|.|+.+    .+|+|||+|++.++|.+|+.. +..+.+.+|.|.|+..
T Consensus       120 ~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~  186 (193)
T 2voo_A          120 DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD  186 (193)
T ss_dssp             TCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred             cCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence            5899999999999999999999853    379999999999999999974 4456778999999865

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=3.8e-07  Score=73.57  Aligned_cols=59  Identities=19%  Similarity=0.322  Sum_probs=49.5

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh---hhCCCCCCcEEeec
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY---ELGLPNCPLTLNYL   97 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~---e~g~~~nPl~~~~l   97 (512)
                      ..+++.|+++|++||.|..|.|.. .+|.|+|+|.+.++|..|+..   ..-+...||+|.|-
T Consensus        23 ~~t~~~l~~~f~~~G~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a   84 (85)
T 2ytc_A           23 TITETDLRNHFYQFGEIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG   84 (85)
T ss_dssp             TSCHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred             CCCHHHHHHHHHhCCCEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence            589999999999999999998765 379999999999999999972   23344678888883

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.36  E-value=1.5e-06  Score=72.13  Aligned_cols=66  Identities=24%  Similarity=0.236  Sum_probs=54.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhhh--CCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYEL--GLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~--g~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|.     .+.+|.|+|+|.+.++|..|+..=.  -+...+|+|.|-.+....
T Consensus        19 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~   91 (99)
T 1whw_A           19 TSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEA   91 (99)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCSTT
T ss_pred             CCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCccc
Confidence            58999999999999999999874     3457999999999999999996422  234679999999876554

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.36  E-value=2.1e-07  Score=81.17  Aligned_cols=65  Identities=14%  Similarity=0.117  Sum_probs=54.1

Q ss_pred             CCCCHHHHHHHhhccCCeeEE-EEcc----CCCceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEecCCCc
Q psy3926         425 DVYTRESLTKIFSKYGKINIL-VISP----KKRGSALLEFEHADSARRAKL-YELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V-~i~~----~kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa~~~~  489 (512)
                      -.+|+++|+++|+.||.|.++ +|..    ..+|+|||+|.+.++|.+||. ++..+.+.+|.|.|+.++.
T Consensus        35 ~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~~  105 (124)
T 1wel_A           35 FEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKG  105 (124)
T ss_dssp             TTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHHH
T ss_pred             CCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCHHH
Confidence            369999999999999999874 4432    237999999999999999997 4566778999999997654

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.36  E-value=8.6e-07  Score=76.17  Aligned_cols=62  Identities=19%  Similarity=0.252  Sum_probs=53.1

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~  100 (512)
                      +.+++.|+++|++||.|..|.|.. .+|.|+|+|.+.++|..|+..-.|  +-..||.|.|-...
T Consensus        21 ~~te~~L~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~   84 (111)
T 1whx_A           21 GTLAAEIQETFSRFGSLGRVLLPE-GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG   84 (111)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEECCS-SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            589999999999999999998864 679999999999999999975333  46789999997643

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.36  E-value=3.4e-07  Score=72.78  Aligned_cols=50  Identities=12%  Similarity=0.056  Sum_probs=44.4

Q ss_pred             CcccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHcc
Q psy3926         253 DLYGLLELTID---CSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLL  306 (512)
Q Consensus       253 d~YeiLgv~~~---As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLs  306 (512)
                      .-|.||||+++   ++.++|+++||+|....|||+.++    ...+.+|+.|+++|.
T Consensus         5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS----~yl~~ki~~Ake~l~   57 (65)
T 2guz_B            5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS----FYLQSKVYRAAERLK   57 (65)
T ss_dssp             HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC----HHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHH
Confidence            45889999999   999999999999999999999753    367888999999885

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.35  E-value=8.9e-07  Score=74.21  Aligned_cols=66  Identities=23%  Similarity=0.343  Sum_probs=54.5

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc---CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~---k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|..   +.+|.|+|+|.+.++|+.|+..-.|  +-..+|+|.|-.+....
T Consensus        26 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~   96 (103)
T 2cq3_A           26 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMT   96 (103)
T ss_dssp             TCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCC
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCC
Confidence            589999999999999999997753   3489999999999999999974233  45678999998866444

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.35  E-value=7.4e-07  Score=74.71  Aligned_cols=66  Identities=23%  Similarity=0.285  Sum_probs=55.6

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc---CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~---k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|..   +.+|.|+|+|.+.++|..|+..  ..-+...+|.|.|-.+...+
T Consensus        26 ~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~   96 (103)
T 2d9p_A           26 GIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER   96 (103)
T ss_dssp             TCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCCC
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccccC
Confidence            589999999999999999997753   5679999999999999999974  33356789999999876554

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.35  E-value=1.1e-06  Score=74.66  Aligned_cols=65  Identities=18%  Similarity=0.305  Sum_probs=54.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|... +|.|+|+|.+.++|..|+..=.|  +...+|+|.|-.+....
T Consensus        36 ~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~  102 (109)
T 1x4g_A           36 GLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDM  102 (109)
T ss_dssp             CCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCSS
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCCC
Confidence            5899999999999999999987665 89999999999999999964333  34678999998866443

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.33  E-value=6.2e-07  Score=74.38  Aligned_cols=66  Identities=23%  Similarity=0.284  Sum_probs=54.0

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc--------CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP--------KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~--------k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|..        +.+|.|+|+|.+.++|+.|+..  ..-+...+|.|.|-.+....
T Consensus        16 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~   91 (98)
T 2cpf_A           16 STTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKP   91 (98)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSCC
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCCC
Confidence            489999999999999999997653        4468999999999999999973  22344678999998866443

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.33  E-value=2e-07  Score=81.02  Aligned_cols=76  Identities=14%  Similarity=0.128  Sum_probs=60.4

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCC---eeEEEEccCC----CceEEEEEcCHHHHHHHHH-hhcCCCCCce
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGK---INILVISPKK----RGSALLEFEHADSARRAKL-YELGLPNCPL  480 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~---I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL  480 (512)
                      ..++|.|.     +.+-.+|+++|+++|+.||.   |.+|.|..++    +|+|||+|.+.++|.+|+. ++..+.+.+|
T Consensus        16 ~~~~l~V~-----nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i   90 (118)
T 2db1_A           16 EGYVVKLR-----GLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYI   90 (118)
T ss_dssp             CCCEEEEE-----SCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEE
T ss_pred             CCcEEEEe-----CCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEE
Confidence            34556664     22246999999999999999   8999988643    7899999999999999997 3455677899


Q ss_pred             EEEecCCCc
Q psy3926         481 TLNYLNPDV  489 (512)
Q Consensus       481 ~V~wa~~~~  489 (512)
                      .|.++....
T Consensus        91 ~V~~a~~~~   99 (118)
T 2db1_A           91 EVFKSHRTE   99 (118)
T ss_dssp             EEEEECHHH
T ss_pred             EEEECCHHH
Confidence            999997544

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=98.33  E-value=4.5e-07  Score=81.15  Aligned_cols=66  Identities=26%  Similarity=0.263  Sum_probs=57.1

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHhhcCCCCCceEEEecCCCcc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPDVE  490 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~~~~~~~~pL~V~wa~~~~~  490 (512)
                      ..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.....+.+.+|.|.|+.++.+
T Consensus        13 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~   83 (167)
T 2cjk_A           13 WDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDE   83 (167)
T ss_dssp             TTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHH
T ss_pred             CCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccchhh
Confidence            469999999999999999999987643     699999999999999999876666778899999876543

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.33  E-value=7.2e-07  Score=74.52  Aligned_cols=77  Identities=19%  Similarity=0.260  Sum_probs=59.0

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCce
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPL  480 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL  480 (512)
                      ...++|-|.=     .+..+|+++|+++|+.|+.|   .++.+     .+|+|||+|.+.++|.+||.  ++..+.+.+|
T Consensus        13 ~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~~~~---~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l   84 (102)
T 2fc8_A           13 QPSKTLFVKG-----LSEDTTEETLKESFDGSVRA---RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV   84 (102)
T ss_dssp             CCCSSEEEEC-----CCTTCCHHHHHHTSTTCSEE---EEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred             CCCCEEEEeC-----CCCccCHHHHHHHhcCCeEE---EEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence            3456676651     22369999999999988654   33332     27999999999999999997  4666778999


Q ss_pred             EEEecCCCcccc
Q psy3926         481 TLNYLNPDVERE  492 (512)
Q Consensus       481 ~V~wa~~~~~r~  492 (512)
                      .|.|+.++.++.
T Consensus        85 ~V~~a~~~~~~~   96 (102)
T 2fc8_A           85 TLDWAKPKGEGG   96 (102)
T ss_dssp             EEEECCCCCSSS
T ss_pred             EEEEecCCCCCC
Confidence            999999876654

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=98.32  E-value=7.7e-07  Score=74.87  Aligned_cols=63  Identities=22%  Similarity=0.325  Sum_probs=52.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|.+|.|..     +.+|.|+|+|.+.++|..|+..  ..-+...+|+|.|-.+.
T Consensus        34 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~  103 (106)
T 1p27_B           34 EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR  103 (106)
T ss_dssp             TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred             CCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCC
Confidence            589999999999999999997743     3479999999999999999974  33355789999997654

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=98.32  E-value=6.5e-07  Score=78.69  Aligned_cols=78  Identities=18%  Similarity=0.190  Sum_probs=59.2

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC---------CceEEEEEcCHHHHHHHHH--hhcCCCC
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK---------RGSALLEFEHADSARRAKL--YELGLPN  477 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k---------kg~A~V~F~s~~~A~~Ai~--~~~~~~~  477 (512)
                      .+++|.|+=-..+..-..-.+++|++.|++||.|.+|.|+.++         +|+|||+|.+.++|.+|+.  ++..+.+
T Consensus        19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G   98 (118)
T 3ue2_A           19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG   98 (118)
T ss_dssp             SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence            3455666543333211122478999999999999999998653         4899999999999999997  4677788


Q ss_pred             CceEEEecC
Q psy3926         478 CPLTLNYLN  486 (512)
Q Consensus       478 ~pL~V~wa~  486 (512)
                      .+|.|.|+.
T Consensus        99 R~i~v~~~~  107 (118)
T 3ue2_A           99 RKVVAEVYD  107 (118)
T ss_dssp             EECEEEEEC
T ss_pred             cEEEEEEcC
Confidence            999999984

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.31  E-value=9.8e-07  Score=73.57  Aligned_cols=64  Identities=22%  Similarity=0.319  Sum_probs=53.5

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDV  101 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~  101 (512)
                      ..+++.|+++|++||.|..|.|..    +.+|.|+|+|.+.++|..|+..  ..-+-..+|+|.|-.|..
T Consensus        28 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~   97 (100)
T 2do4_A           28 SCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGP   97 (100)
T ss_dssp             TCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCS
T ss_pred             CCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence            589999999999999999997754    3469999999999999999964  333556899999987663

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.31  E-value=6.2e-07  Score=73.78  Aligned_cols=64  Identities=22%  Similarity=0.247  Sum_probs=54.0

Q ss_pred             CCCHHHHHHHHhhcCc-ccEEEeccCCCceEEEEeccHHHHHHHHHhhhC---CCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGK-INILVISPKKRGSALLEFEHADSARRAKLYELG---LPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~-v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g---~~~nPl~~~~l~~~~~~  103 (512)
                      ..|++.|+++|++||. |..++|.  .+|.|+|+|.+.++|+.|+..-.|   +...+|+|.|-.+...+
T Consensus        19 ~~t~~~l~~~F~~~G~vv~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~~   86 (93)
T 2cqh_A           19 AVTADDLRQLFGDRKLPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKLR   86 (93)
T ss_dssp             TCCHHHHHHHHHHTTCCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCCC
T ss_pred             CCCHHHHHHHHHHcCCceEEEEEc--CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcccc
Confidence            5899999999999999 7777663  479999999999999999975555   56789999999876544

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=98.31  E-value=6.9e-07  Score=76.51  Aligned_cols=62  Identities=29%  Similarity=0.408  Sum_probs=53.0

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~  102 (512)
                      ..+++.|+++|++||.|..|.|.   +|.|+|+|.+.++|..|+..  ..-+...+|.|.|-.+...
T Consensus        42 ~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~  105 (108)
T 2jvo_A           42 DVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAK  105 (108)
T ss_dssp             TCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC-
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCC
Confidence            58999999999999999999876   79999999999999999974  3334678899999876643

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.31  E-value=1.3e-06  Score=73.31  Aligned_cols=65  Identities=17%  Similarity=0.211  Sum_probs=54.6

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~  102 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|..|+..  ..-+...+|+|.|-.+...
T Consensus        26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~   97 (105)
T 1x5u_A           26 KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNK   97 (105)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSC
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCc
Confidence            489999999999999999998743     4579999999999999999974  3335578999999886644

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.30  E-value=2.2e-06  Score=71.52  Aligned_cols=65  Identities=25%  Similarity=0.443  Sum_probs=54.3

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~  102 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|..|+..  ..-+-..+|+|.|-.+...
T Consensus        23 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~   94 (102)
T 1x5s_A           23 DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSD   94 (102)
T ss_dssp             TCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence            589999999999999999998744     3579999999999999999964  3334568999999876644

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.30  E-value=6.8e-07  Score=74.82  Aligned_cols=66  Identities=18%  Similarity=0.263  Sum_probs=54.9

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccC-----CCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k-----~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|...     .+|.|+|+|.+.++|..|+..  ..-+...+|+|.|-.+....
T Consensus        19 ~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~   91 (104)
T 1p1t_A           19 EATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK   91 (104)
T ss_dssp             TSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTHH
T ss_pred             cCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCccch
Confidence            5899999999999999999977533     379999999999999999973  33355789999998866544

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.30  E-value=7.3e-07  Score=74.48  Aligned_cols=66  Identities=29%  Similarity=0.317  Sum_probs=55.0

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|+.|+..  ..-+-..+|+|.|-.+....
T Consensus        23 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~   95 (102)
T 2cqb_A           23 EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIK   95 (102)
T ss_dssp             SCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred             CCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCC
Confidence            589999999999999999998743     4689999999999999999963  33345789999998866544

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=98.30  E-value=2.8e-06  Score=71.41  Aligned_cols=66  Identities=21%  Similarity=0.327  Sum_probs=55.3

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhCC-----CCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELGL-----PNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g~-----~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|..|+..-.|.     ...||.|.|-.+....
T Consensus        24 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~   99 (106)
T 2dgp_A           24 NLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG   99 (106)
T ss_dssp             TCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSCC
T ss_pred             CCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCccccc
Confidence            589999999999999999998743     45799999999999999999754452     4589999999866443

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=98.30  E-value=1.1e-06  Score=83.35  Aligned_cols=77  Identities=19%  Similarity=0.126  Sum_probs=61.4

Q ss_pred             cceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hcCCCCCceEE
Q psy3926         410 NYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY--ELGLPNCPLTL  482 (512)
Q Consensus       410 ~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V  482 (512)
                      ..+|-|.   +  .+..+|+++|+++|++||.|.+|.|+.++     +|+|||+|.+.++|.+|+..  +..+.+.+|.|
T Consensus        15 ~~tlfVg---n--Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~   89 (213)
T 4f02_A           15 MASLYVG---D--LHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI   89 (213)
T ss_dssp             CCEEEEE---S--CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred             CcEEEEe---C--CCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccc
Confidence            4566553   2  23469999999999999999999998643     69999999999999999974  45566788999


Q ss_pred             EecCCCccc
Q psy3926         483 NYLNPDVER  491 (512)
Q Consensus       483 ~wa~~~~~r  491 (512)
                      .|+......
T Consensus        90 ~~~~~~~~~   98 (213)
T 4f02_A           90 MWSQRDPSL   98 (213)
T ss_dssp             EECCCCTHH
T ss_pred             ccccccccc
Confidence            999765543

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=98.30  E-value=8.7e-07  Score=75.74  Aligned_cols=66  Identities=17%  Similarity=0.187  Sum_probs=54.0

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccC-----CCceEEEEeccHHHHHHHHHhh--hCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLYE--LGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k-----~~g~A~vef~~~~aa~~a~~~e--~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|...     .+|.|+|+|.+.++|+.|+..-  .-+-..+|+|.|-.+....
T Consensus        26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~   98 (115)
T 2dgo_A           26 EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA   98 (115)
T ss_dssp             TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCC
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCC
Confidence            5899999999999999999977543     3799999999999999999742  2234679999999866443

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=98.29  E-value=1.4e-06  Score=73.03  Aligned_cols=60  Identities=27%  Similarity=0.349  Sum_probs=51.4

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~~  100 (512)
                      +.+++.|+++|++||.|..|.|+   +|.|+|+|.+.++|..|+..-.|.  -..+|+|.|-.+.
T Consensus        34 ~~t~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~   95 (97)
T 2xnq_A           34 NVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN   95 (97)
T ss_dssp             CCCHHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred             cCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence            48999999999999999999984   799999999999999999754443  3678999987654

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=98.29  E-value=1.2e-06  Score=78.56  Aligned_cols=63  Identities=22%  Similarity=0.332  Sum_probs=55.1

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|..|.|....+|.|+|+|.+.++|..|+..  ..-+-..||+|+|-.|.
T Consensus        84 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~  148 (150)
T 2i2y_A           84 NGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE  148 (150)
T ss_dssp             CCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred             CCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence            5799999999999999999998877899999999999999999974  33355789999997665

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=98.29  E-value=1.2e-06  Score=72.66  Aligned_cols=66  Identities=23%  Similarity=0.216  Sum_probs=54.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~~  103 (512)
                      +.+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|..|+..-.|  +-..+|.|.|-.+....
T Consensus        13 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~   85 (96)
T 2x1f_A           13 DQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDIS   85 (96)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSGG
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCCC
Confidence            589999999999999999998753     3489999999999999999964233  34588999999876554

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.29  E-value=1.5e-06  Score=71.38  Aligned_cols=63  Identities=17%  Similarity=0.216  Sum_probs=53.4

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|.   +|.|+|+|.+.++|..|+..  ..-+...+|+|.|-.+....
T Consensus        21 ~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~   85 (92)
T 2dgt_A           21 TCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT   85 (92)
T ss_dssp             SCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCSC
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCCC
Confidence            58999999999999999999885   56999999999999999963  33345689999999876443

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=98.29  E-value=5.3e-07  Score=76.69  Aligned_cols=76  Identities=18%  Similarity=0.174  Sum_probs=60.6

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCC---eeEEEEccC----CCceEEEEEcCHHHHHHHHHh-hcCCCCCce
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGK---INILVISPK----KRGSALLEFEHADSARRAKLY-ELGLPNCPL  480 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~---I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL  480 (512)
                      ..++|.|.-     .+-..|+++|+++|+.||.   |.+|.|..+    .+|+|||+|.+.++|.+|+.. +..+.+.+|
T Consensus        10 ~~~~l~V~n-----Lp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i   84 (107)
T 2lmi_A           10 DVFLIRAQG-----LPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV   84 (107)
T ss_dssp             SCCEEEEEC-----CCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCC
T ss_pred             CccEEEEeC-----CCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEE
Confidence            445666652     2236899999999999998   899998864    378999999999999999973 455667899


Q ss_pred             EEEecCCCc
Q psy3926         481 TLNYLNPDV  489 (512)
Q Consensus       481 ~V~wa~~~~  489 (512)
                      .|.++.++.
T Consensus        85 ~V~~a~~~~   93 (107)
T 2lmi_A           85 EVYEINNED   93 (107)
T ss_dssp             CCEECCHHH
T ss_pred             EEEECCHHH
Confidence            999997644

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.29  E-value=1.1e-06  Score=73.65  Aligned_cols=65  Identities=14%  Similarity=0.111  Sum_probs=53.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc---CCCceEEEEeccHHHHHHHHHhh--hCCCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKLYE--LGLPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~---k~~g~A~vef~~~~aa~~a~~~e--~g~~~nPl~~~~l~~~~~  102 (512)
                      ..+++.|+++|++||.|..|.|..   ..+|.|+|+|.+.++|..|+..-  .-+...+|+|.|-.++..
T Consensus        26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~   95 (103)
T 2cqi_A           26 DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSS   95 (103)
T ss_dssp             TCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTC
T ss_pred             cCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCcc
Confidence            589999999999999999997743   35799999999999999999732  224468999999886543

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=98.28  E-value=7.2e-07  Score=75.32  Aligned_cols=62  Identities=23%  Similarity=0.368  Sum_probs=50.9

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNP   99 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~   99 (512)
                      ..|++.|+++|++||.|..|.|.     .+.+|.|+|+|.+.++|..|+..  ..=+...||+|+|-.|
T Consensus        30 ~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP   98 (99)
T 4fxv_A           30 NMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP   98 (99)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred             CCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence            58999999999999999999663     24578999999999999999964  2233457899999654

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.28  E-value=1.1e-06  Score=73.57  Aligned_cols=65  Identities=12%  Similarity=0.205  Sum_probs=53.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhCCCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g~~~nPl~~~~l~~~~~  102 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|..|+..-.-+...+|.|.|-.+...
T Consensus        26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~~~~   95 (103)
T 2cqg_A           26 KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQS   95 (103)
T ss_dssp             SCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCTTCC
T ss_pred             cCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCCCCc
Confidence            589999999999999999997643     34689999999999999999853335567899999876544

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=98.28  E-value=8.8e-07  Score=75.12  Aligned_cols=63  Identities=19%  Similarity=0.286  Sum_probs=52.4

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|..|+..  ..-+...+|+|.|-.+.
T Consensus        37 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~  106 (110)
T 1oo0_B           37 EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK  106 (110)
T ss_dssp             TCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEES
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccC
Confidence            589999999999999999998754     3379999999999999999974  22245678999997654

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.28  E-value=1.9e-06  Score=72.88  Aligned_cols=66  Identities=17%  Similarity=0.298  Sum_probs=55.0

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--------hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--------ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--------e~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|.+|.|..     +.+|.|+|+|.+.++|..|+..        ..-+...+|+|.|-.+....
T Consensus        26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~~  104 (111)
T 1x4h_A           26 DSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEA  104 (111)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCC
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCccC
Confidence            589999999999999999998752     4589999999999999999964        23455788999998766443

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=98.28  E-value=1e-06  Score=74.04  Aligned_cols=63  Identities=24%  Similarity=0.361  Sum_probs=53.5

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..|++.|+++|++||.|..|.|.   +|.|+|+|.+.++|..|+..  ..-+...+|.|.|-.+....
T Consensus        22 ~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~   86 (103)
T 2dgu_A           22 TVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK   86 (103)
T ss_dssp             TCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence            58999999999999999999875   68999999999999999973  33345779999999866443

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=1.4e-06  Score=71.32  Aligned_cols=63  Identities=14%  Similarity=0.232  Sum_probs=53.1

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|.   +|.|+|+|.+.++|..|+..-.|  +...+|+|.|-.+....
T Consensus        20 ~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~   84 (90)
T 2dnp_A           20 ACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKK   84 (90)
T ss_dssp             TCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred             CCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCCC
Confidence            58999999999999999999885   56999999999999999974233  45678999999876443

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=98.27  E-value=5.8e-07  Score=74.35  Aligned_cols=63  Identities=21%  Similarity=0.296  Sum_probs=49.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~~~nPl~~~~l~~~  100 (512)
                      ..|++.|+++|++||.|..|.|..+.+|-|+|+|.+.++|..+...+...-..+|.|.|-.|.
T Consensus        22 ~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~k   84 (89)
T 3d2w_A           22 DMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEPK   84 (89)
T ss_dssp             TCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC--
T ss_pred             CCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCCC
Confidence            589999999999999999998887789999999999999995543333333556777776554

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=98.27  E-value=1.4e-06  Score=75.57  Aligned_cols=64  Identities=22%  Similarity=0.303  Sum_probs=53.5

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDV  101 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~  101 (512)
                      ..|++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|..|+..  ..-+...+|+|.|-.+..
T Consensus        33 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~  103 (126)
T 3ex7_B           33 EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG  103 (126)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCC
Confidence            589999999999999999998743     3389999999999999999963  333556789999987543

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=1.5e-06  Score=72.85  Aligned_cols=65  Identities=23%  Similarity=0.339  Sum_probs=54.3

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~  102 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|+.|+..  ..-+...+|+|.|-.+...
T Consensus        24 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~   95 (103)
T 2dnm_A           24 RTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRR   95 (103)
T ss_dssp             TCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCS
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCCC
Confidence            589999999999999999998753     4579999999999999999973  3335568999999886543

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=98.26  E-value=2.2e-06  Score=76.14  Aligned_cols=66  Identities=21%  Similarity=0.288  Sum_probs=53.8

Q ss_pred             CCCHHHHH----HHHhhcCcccEEEecc--CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLT----KIFSKYGKINILVISP--KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~----~~f~kyG~v~~~v~~~--k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+    ++|++||.|.+|.|..  +.+|.|+|+|.+.++|..|+..-.|  +...||.|.|-.+....
T Consensus        40 ~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~  113 (127)
T 2a3j_A           40 EVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQ  113 (127)
T ss_dssp             TSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHH
T ss_pred             CCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchh
Confidence            47888765    7999999999998853  6789999999999999999975444  45779999998765443

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.26  E-value=2e-06  Score=71.70  Aligned_cols=64  Identities=25%  Similarity=0.334  Sum_probs=54.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~  102 (512)
                      ..+++.|+++|++||.|..|.|.. .+|.|+|+|.+.++|..|+..-.|  +...+|+|.|-.+...
T Consensus        26 ~~t~~~l~~~F~~~G~i~~v~~~~-~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~   91 (99)
T 2cpj_A           26 DITEEEMRKLFEKYGKAGEVFIHK-DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS   91 (99)
T ss_dssp             TCCHHHHHHHTSTTCCCSEEEEET-TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred             CCCHHHHHHHHhhcCCeEEEEEec-CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence            589999999999999999998764 479999999999999999965333  4568999999876643

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=98.26  E-value=7.6e-07  Score=80.09  Aligned_cols=75  Identities=12%  Similarity=0.093  Sum_probs=60.5

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCC---eeEEEEccCC----CceEEEEEcCHHHHHHHHH-hhcCCCCCce
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGK---INILVISPKK----RGSALLEFEHADSARRAKL-YELGLPNCPL  480 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~---I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL  480 (512)
                      ..++|.|.     +.+-..|+++|+++|+.||.   |.+|.|+.++    +|+|||+|.+.++|.+|+. ++..+.+.+|
T Consensus        43 ~~~~lfVg-----nLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i  117 (136)
T 2hgl_A           43 EGFVVKLR-----GLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYI  117 (136)
T ss_dssp             TTCEEEEE-----SCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEE
T ss_pred             CCCEEEEe-----CCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEE
Confidence            34556654     22246999999999999999   8899888653    7899999999999999997 4566778999


Q ss_pred             EEEecCCC
Q psy3926         481 TLNYLNPD  488 (512)
Q Consensus       481 ~V~wa~~~  488 (512)
                      .|.++.++
T Consensus       118 ~V~~a~~~  125 (136)
T 2hgl_A          118 EVFKSHRT  125 (136)
T ss_dssp             EEEECCHH
T ss_pred             EEEECChH
Confidence            99998654

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=98.26  E-value=1.2e-06  Score=70.18  Aligned_cols=63  Identities=21%  Similarity=0.221  Sum_probs=51.7

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|..+.|..     +.+|.|+|+|.+.++|..|+..  -.-+...||.|.|-.+.
T Consensus        12 ~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~   81 (83)
T 3md1_A           12 NVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL   81 (83)
T ss_dssp             TCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred             CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence            589999999999999999997642     3479999999999999999973  22234678999998765

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=98.25  E-value=2.3e-06  Score=74.25  Aligned_cols=66  Identities=15%  Similarity=0.342  Sum_probs=54.9

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|..    +.+|.|+|+|.+.++|..|+..  ..-+-..+|+|.|-.+....
T Consensus        46 ~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~  117 (124)
T 2kt5_A           46 GVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDL  117 (124)
T ss_dssp             SCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTCC
T ss_pred             CCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCC
Confidence            589999999999999999998754    3689999999999999999973  33355689999998765443

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.25  E-value=7.4e-07  Score=74.70  Aligned_cols=66  Identities=20%  Similarity=0.384  Sum_probs=54.3

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|..|+..-.|  +-..+|+|.|-.+....
T Consensus        26 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~   98 (103)
T 2cq0_A           26 DTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTNS   98 (103)
T ss_dssp             TCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCS
T ss_pred             CCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCCC
Confidence            589999999999999999997743     3478999999999999999974222  34678999998876443

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=98.25  E-value=6.5e-07  Score=80.87  Aligned_cols=66  Identities=17%  Similarity=0.068  Sum_probs=55.0

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKL-YELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa~~~~~r  491 (512)
                      -.+|+++|+++|+.|| |.+|.|+.++    +|+|||+|++.++|.+||. +...+.+.+|.|.++.+++..
T Consensus        56 ~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~~  126 (139)
T 2hgn_A           56 YKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGAS  126 (139)
T ss_dssp             TTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC-
T ss_pred             CCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCCC
Confidence            4699999999999999 6799888643    7999999999999999995 345667789999998876543

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.24  E-value=1e-06  Score=75.30  Aligned_cols=63  Identities=22%  Similarity=0.353  Sum_probs=52.7

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc---CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~---k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|..|.|..   +.+|.|+|+|.+.++|+.|+..-.|  +-..+|.|.|-.+.
T Consensus        40 ~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~  107 (109)
T 2err_A           40 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR  107 (109)
T ss_dssp             TCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred             cCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            589999999999999999998753   3489999999999999999974333  45678999997654

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.24  E-value=2.5e-06  Score=70.45  Aligned_cols=63  Identities=19%  Similarity=0.319  Sum_probs=52.4

Q ss_pred             CCCHHHHHHHHhhcCcccEE-Ee-ccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINIL-VI-SPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~-v~-~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|..+ .| ..+..|.|+|+|.+.++|..|+..  ..-+-..+|.|.|..|.
T Consensus        26 ~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~   92 (96)
T 2e44_A           26 HLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE   92 (96)
T ss_dssp             SSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence            58999999999999999998 34 445667799999999999999974  33345689999998776

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.23  E-value=9.2e-07  Score=72.66  Aligned_cols=61  Identities=31%  Similarity=0.420  Sum_probs=50.0

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhh--hCCCCCCcEEeecC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYE--LGLPNCPLTLNYLN   98 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e--~g~~~nPl~~~~l~   98 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|..|+..=  .-+...+|+|+|-.
T Consensus        26 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   93 (95)
T 2cqc_A           26 YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS   93 (95)
T ss_dssp             SCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred             CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence            589999999999999999997742     44789999999999999999742  22346788888853

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.23  E-value=1.3e-06  Score=71.96  Aligned_cols=66  Identities=24%  Similarity=0.268  Sum_probs=53.7

Q ss_pred             CCCHHHHHHHHhhcCcccEE-Eecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINIL-VISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~-v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..+ .|..     +.+|.|+|+|.+.++|+.|+..  -.-+-..||+|.|-.+....
T Consensus        16 ~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~   89 (96)
T 1x5t_A           16 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK   89 (96)
T ss_dssp             TCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCCC
T ss_pred             CCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCCC
Confidence            58999999999999999988 5533     3579999999999999999973  22245688999998866443

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=98.23  E-value=1e-06  Score=70.89  Aligned_cols=60  Identities=28%  Similarity=0.293  Sum_probs=48.9

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeec
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYL   97 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l   97 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|..|+..=.|  +...+|+|+|-
T Consensus        18 ~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   84 (85)
T 3mdf_A           18 EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA   84 (85)
T ss_dssp             TCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence            589999999999999999997732     3589999999999999999964222  34567888873

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.23  E-value=2.1e-06  Score=72.51  Aligned_cols=66  Identities=20%  Similarity=0.350  Sum_probs=55.1

Q ss_pred             CCCHHHHHHHHhhcCc-ccEEEecc------CCCceEEEEeccHHHHHHHHHhh----hCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGK-INILVISP------KKRGSALLEFEHADSARRAKLYE----LGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~-v~~~v~~~------k~~g~A~vef~~~~aa~~a~~~e----~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||. |.+|.|..      +.+|.|+|+|.+.++|..|+..-    .-+...+|+|.|-.|....
T Consensus        19 ~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~~   95 (109)
T 2dis_A           19 MKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDV   95 (109)
T ss_dssp             TSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCST
T ss_pred             cCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCCc
Confidence            5899999999999999 99998752      56899999999999999999742    2356778999999866543

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=98.23  E-value=1.9e-06  Score=70.41  Aligned_cols=65  Identities=20%  Similarity=0.277  Sum_probs=54.0

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc---CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~---k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~  102 (512)
                      ..+++.|+++|++||.|..|.|..   +.+|.|+|+|.+.++|+.|+..  ..-+-..+|+|.|-.+...
T Consensus        19 ~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~   88 (92)
T 2dgv_A           19 DFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASG   88 (92)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence            589999999999999999997753   3579999999999999999974  3335568899999876633

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=98.22  E-value=2.5e-06  Score=75.41  Aligned_cols=63  Identities=30%  Similarity=0.453  Sum_probs=53.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|..|.|.     .+.+|.|+|+|.+.++|+.|+..  ..-+...+|.|.|-.+.
T Consensus        57 ~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~  126 (129)
T 2kxn_B           57 YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITK  126 (129)
T ss_dssp             SCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSS
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence            58999999999999999999774     25689999999999999999974  33345688999998754

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=98.22  E-value=1.1e-06  Score=72.20  Aligned_cols=60  Identities=18%  Similarity=0.264  Sum_probs=49.6

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccC----CCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeec
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYL   97 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k----~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l   97 (512)
                      ..+++.|+++|++||.|..|.|...    .+|.|+|+|.+.++|..|+..  ..-+...+|+|.|-
T Consensus        27 ~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a   92 (95)
T 2ywk_A           27 RVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP   92 (95)
T ss_dssp             TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence            5899999999999999999977543    378999999999999999973  22244678888874

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=98.22  E-value=1.2e-06  Score=72.69  Aligned_cols=65  Identities=18%  Similarity=0.301  Sum_probs=52.8

Q ss_pred             CCCHHHHHHHHhhcC-cccEEEec-----cCCCceEEEEeccHHHHHHHHHhh-hC--CCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYG-KINILVIS-----PKKRGSALLEFEHADSARRAKLYE-LG--LPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG-~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e-~g--~~~nPl~~~~l~~~~~  102 (512)
                      ..|++.|+++|++|| .|.+|.|.     .+.+|.|+|+|.+.++|..|+..- -|  +...||.|.|-.|.+.
T Consensus        12 ~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~   85 (91)
T 2lxi_A           12 AATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPK   85 (91)
T ss_dssp             SCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCC
T ss_pred             CCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCC
Confidence            589999999999999 89998653     356899999999999999999632 22  3467999999876644

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=98.21  E-value=2.2e-06  Score=83.89  Aligned_cols=78  Identities=26%  Similarity=0.413  Sum_probs=62.4

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHH----HHhhccCCeeEEEEcc--CCCceEEEEEcCHHHHHHHHH--hhcCCCCCc
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLT----KIFSKYGKINILVISP--KKRGSALLEFEHADSARRAKL--YELGLPNCP  479 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~----~iFs~fG~I~~V~i~~--~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~p  479 (512)
                      ...++|-|.==     ...+|+++|+    ++|+.||.|.+|.|..  ..+|+|||+|.+.++|.+|+.  ++..+.+.+
T Consensus         7 ~~~~~l~V~nl-----p~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~   81 (282)
T 3pgw_A            7 RPNHTIYINNL-----NEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP   81 (282)
T ss_pred             CCCCEEEEeCC-----CCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence            34556666522     2368999976    8999999999999875  347999999999999999996  466778899


Q ss_pred             eEEEecCCCcc
Q psy3926         480 LTLNYLNPDVE  490 (512)
Q Consensus       480 L~V~wa~~~~~  490 (512)
                      |.|.|+.....
T Consensus        82 l~v~~a~~~~~   92 (282)
T 3pgw_A           82 MRIQYAKTDSD   92 (282)
T ss_pred             EEEEEeccCcc
Confidence            99999976553

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=98.21  E-value=1.9e-06  Score=67.87  Aligned_cols=59  Identities=19%  Similarity=0.253  Sum_probs=47.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEee
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNY   96 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~   96 (512)
                      ..+++.|+++|++||.|..+.|..     +.+|.|+|+|.+.++|+.|++. ..-+...+|.|.|
T Consensus        10 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~   74 (75)
T 2mss_A           10 NTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK   74 (75)
T ss_dssp             SCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEe
Confidence            589999999999999999997743     4479999999999999999852 1123356787776

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=98.20  E-value=2.3e-06  Score=73.15  Aligned_cols=63  Identities=19%  Similarity=0.413  Sum_probs=52.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      +.+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|..|+..  ..-+-..+|+|+|-.+.
T Consensus        37 ~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k  106 (108)
T 2jrs_A           37 NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER  106 (108)
T ss_dssp             SCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSS
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccC
Confidence            589999999999999999997643     3479999999999999999973  33345789999998765

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.20  E-value=1.7e-06  Score=68.25  Aligned_cols=59  Identities=15%  Similarity=0.287  Sum_probs=48.5

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhh-hCCCCCCcEEee
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYE-LGLPNCPLTLNY   96 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e-~g~~~nPl~~~~   96 (512)
                      ..+++.|+++|++||.|.++.|..     +.+|.|+|+|.+.++|+.|+..- .-+...+|.|.|
T Consensus        11 ~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~   75 (77)
T 1uaw_A           11 QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV   75 (77)
T ss_dssp             SCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEE
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEe
Confidence            589999999999999999997743     34799999999999999999631 334456888887

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=98.20  E-value=2.6e-06  Score=75.14  Aligned_cols=66  Identities=23%  Similarity=0.367  Sum_probs=54.9

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|+.|+..  ..-+...+|.|.|-.+...+
T Consensus        53 ~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~  125 (139)
T 1u6f_A           53 TVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQR  125 (139)
T ss_dssp             TCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCC
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence            589999999999999999997643     3479999999999999999974  33356789999998866544

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=98.20  E-value=2e-06  Score=73.62  Aligned_cols=66  Identities=11%  Similarity=0.167  Sum_probs=53.9

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|+.|+..  ..-+...+|+|.|-.+....
T Consensus        36 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~  108 (115)
T 2cpz_A           36 EFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS  108 (115)
T ss_dssp             SCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCCC
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCcC
Confidence            589999999999999999997643     3468999999999999999964  22345678999998866444

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.20  E-value=2.7e-06  Score=72.53  Aligned_cols=60  Identities=15%  Similarity=0.246  Sum_probs=50.3

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLN   98 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~   98 (512)
                      ..|++.|+++|++||.|.+|.|..    +.+|.|+|+|.+.++|..|+. ..|  +...+|.|.|-.
T Consensus        22 ~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~   87 (103)
T 1s79_A           22 DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD   87 (103)
T ss_dssp             TCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred             CCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence            489999999999999999997753    468999999999999999996 333  345789998854

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.19  E-value=2.3e-06  Score=75.08  Aligned_cols=62  Identities=19%  Similarity=0.380  Sum_probs=52.6

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC-------CCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGL-------PNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~-------~~nPl~~~~l~~~  100 (512)
                      +.+++.|+++|++||.|.+|+|.. .||-|+|+|++.++|+.|+..-.|.       ..-||.|.+...-
T Consensus        38 ~~te~~L~~~F~~fG~v~~v~i~~-~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~  106 (114)
T 2cq2_A           38 GVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKV  106 (114)
T ss_dssp             TCCHHHHHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCC
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccC
Confidence            589999999999999999998865 4799999999999999999865554       2457999988744

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=98.19  E-value=2.1e-06  Score=69.34  Aligned_cols=59  Identities=20%  Similarity=0.261  Sum_probs=50.3

Q ss_pred             CCCCHHHHHHHhhcc----C-------CeeEEEEccCCCceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEe
Q psy3926         425 DVYTRESLTKIFSKY----G-------KINILVISPKKRGSALLEFEHADSARRAKL-YELGLPNCPLTLNY  484 (512)
Q Consensus       425 ~~~te~~L~~iFs~f----G-------~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~w  484 (512)
                      ..+|+++|+++|+.|    |       .|.+|.+..+ +|+|||+|.+.++|.+|+. ++..+.+.+|.|..
T Consensus        16 ~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-kg~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~r   86 (87)
T 2hzc_A           16 FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR   86 (87)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-SSEEEEEESSHHHHHHHGGGTTCEETTEECEEEC
T ss_pred             CCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-CcEEEEEcCCHHHHHHHHhcCCCEECCeEEEEeC
Confidence            368999999999999    8       9999998765 8999999999999999994 24556677888863

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=98.19  E-value=1.2e-06  Score=74.21  Aligned_cols=61  Identities=26%  Similarity=0.319  Sum_probs=50.8

Q ss_pred             CHHHHHHHHhhcCcccEEEecc---CCCceEEEEeccHHHHHHHHHhhh--CCCCC-CcEEeecCCC
Q psy3926          40 TRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKLYEL--GLPNC-PLTLNYLNPD  100 (512)
Q Consensus        40 ~~~~l~~~f~kyG~v~~~v~~~---k~~g~A~vef~~~~aa~~a~~~e~--g~~~n-Pl~~~~l~~~  100 (512)
                      +++.|+++|++||.|..|.|..   +.+|.|+|+|.+.++|..|+..-.  -+... ||+|.|..+-
T Consensus        34 t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~  100 (105)
T 2nlw_A           34 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF  100 (105)
T ss_dssp             HHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred             HHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence            7899999999999999998752   457999999999999999997423  34566 9999998643

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.19  E-value=4.5e-07  Score=80.23  Aligned_cols=75  Identities=17%  Similarity=0.090  Sum_probs=57.8

Q ss_pred             cceeEEEeecCCCCCCCCCHHHHHHHhhccCCe----eEEEEccCC----CceEEEEEcCHHHHHHHHHh-hcCCCCCce
Q psy3926         410 NYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKI----NILVISPKK----RGSALLEFEHADSARRAKLY-ELGLPNCPL  480 (512)
Q Consensus       410 ~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I----~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL  480 (512)
                      ..+|.|.     +.+-..|+++|+++|+.||.|    .+|.|+.++    +|+|||+|.+.++|.+|+.. +..+.+..|
T Consensus        23 ~~~v~V~-----nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i   97 (123)
T 2dha_A           23 QVIVRMR-----GLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYI   97 (123)
T ss_dssp             CCEEEEC-----SCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEE
T ss_pred             CCEEEEe-----CCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEE
Confidence            3456554     223469999999999999986    688887542    79999999999999999974 455666788


Q ss_pred             EEEecCCCc
Q psy3926         481 TLNYLNPDV  489 (512)
Q Consensus       481 ~V~wa~~~~  489 (512)
                      .|..+.++.
T Consensus        98 ~V~~a~~~e  106 (123)
T 2dha_A           98 ELFRSTAAE  106 (123)
T ss_dssp             CCEEECHHH
T ss_pred             EEEECCHHH
Confidence            898886543

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=98.19  E-value=1.2e-06  Score=72.31  Aligned_cols=64  Identities=30%  Similarity=0.498  Sum_probs=53.6

Q ss_pred             CCCHHHHH----HHHhhcCcccEEEecc--CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCc
Q psy3926          38 VYTRESLT----KIFSKYGKINILVISP--KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDV  101 (512)
Q Consensus        38 ~Y~~~~l~----~~f~kyG~v~~~v~~~--k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~  101 (512)
                      ..+++.|+    ++|++||.|..|.|..  +.+|.|+|+|.+.++|..|+..-.|  +...||+|.|-.+..
T Consensus        19 ~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~   90 (97)
T 1nu4_A           19 KIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS   90 (97)
T ss_dssp             TSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCC
T ss_pred             CCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCC
Confidence            58999999    9999999999998753  4579999999999999999974333  346889999987654

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.18  E-value=1.9e-06  Score=70.78  Aligned_cols=60  Identities=30%  Similarity=0.357  Sum_probs=49.5

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeec
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYL   97 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l   97 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|+.|+..=.|  +-..+|+|+|-
T Consensus        27 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   93 (94)
T 2e5h_A           27 SLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA   93 (94)
T ss_dssp             TSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence            589999999999999999998743     4479999999999999999964222  34678888873

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=98.18  E-value=2.9e-06  Score=70.67  Aligned_cols=60  Identities=23%  Similarity=0.340  Sum_probs=49.6

Q ss_pred             CCCHHHHHHHHhhcCcccE--------EEecc-----CCCceEEEEeccHHHHHHHHH--hhhCCCCCCcEEeec
Q psy3926          38 VYTRESLTKIFSKYGKINI--------LVISP-----KKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYL   97 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~--------~v~~~-----k~~g~A~vef~~~~aa~~a~~--~e~g~~~nPl~~~~l   97 (512)
                      +.+++.|+++|++||.|..        +.|..     +.+|.|+|+|.+.++|..|+.  +..-+...+|+|.|-
T Consensus        24 ~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A   98 (99)
T 2la6_A           24 NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA   98 (99)
T ss_dssp             SCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred             CCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence            5899999999999999998        65532     347999999999999999996  344456788999874

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.18  E-value=3.6e-06  Score=71.29  Aligned_cols=65  Identities=20%  Similarity=0.260  Sum_probs=53.6

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc--CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP--KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~--k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~  102 (512)
                      ..+++.|+++|++||.|..|.|..  +.+|.|+|+|.+.++|..|+..-.|  +...+|+|.|-.+...
T Consensus        33 ~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~  101 (109)
T 1x4a_A           33 DIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRG  101 (109)
T ss_dssp             TCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCC
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCC
Confidence            589999999999999999997743  3479999999999999999964333  4567899999876544

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=98.18  E-value=1.8e-06  Score=74.39  Aligned_cols=65  Identities=22%  Similarity=0.289  Sum_probs=52.1

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc---CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~---k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~  102 (512)
                      ..|++.|+++|++||.|.+|-|..   +.+|.|+|+|.+.++|..|+..--|  +...+|.|.|..+...
T Consensus        16 ~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~   85 (115)
T 4f25_A           16 SIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE   85 (115)
T ss_dssp             TCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC
T ss_pred             CCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccc
Confidence            589999999999999999986532   3368999999999999999964233  3456899999875533

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.17  E-value=3.7e-06  Score=70.39  Aligned_cols=66  Identities=21%  Similarity=0.227  Sum_probs=55.1

Q ss_pred             CCCHHHHHHHHhh-cCcccEEEecc----CCCceEEEEeccHHHHHHHHHhhhC---CCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSK-YGKINILVISP----KKRGSALLEFEHADSARRAKLYELG---LPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~k-yG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g---~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++ ||.|..|.|..    +.+|.|+|+|.+.++|..|+..-.|   +...||.|.|-.+....
T Consensus        20 ~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~   93 (104)
T 2dhg_A           20 DVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR   93 (104)
T ss_dssp             TCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSC
T ss_pred             CCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcC
Confidence            4899999999999 99999997743    4579999999999999999985444   55789999998765443

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=98.17  E-value=1.7e-06  Score=82.40  Aligned_cols=61  Identities=15%  Similarity=0.201  Sum_probs=52.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN   98 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~   98 (512)
                      ..+++.|+.+|++||+|..|.|...++|.|+|||.+.++|+.|++.  ..-+...||.|.|-.
T Consensus        16 ~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~   78 (205)
T 3tyt_A           16 KMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK   78 (205)
T ss_dssp             TCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred             cCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence            5899999999999999999988777789999999999999999974  333456788888754

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.17  E-value=2.7e-06  Score=70.58  Aligned_cols=63  Identities=21%  Similarity=0.321  Sum_probs=51.4

Q ss_pred             CCCHHHHHHHHhhcCccc-EEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCC----cEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKIN-ILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCP----LTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~-~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nP----l~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|. .|.|..     +.+|.|+|+|.+.++|+.|+..=.|  +...+    |+|.|-.+.
T Consensus        20 ~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~   94 (99)
T 2div_A           20 YMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYS   94 (99)
T ss_dssp             TCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred             CCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence            589999999999999999 886643     3469999999999999999973222  34556    999998765

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.17  E-value=4.8e-06  Score=69.14  Aligned_cols=63  Identities=16%  Similarity=0.201  Sum_probs=52.6

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|...++..+.+|.|+|+|.+.++|..|+..  ..-+-..+|.|.|-.+.
T Consensus        30 ~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   94 (97)
T 2e5j_A           30 DARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ   94 (97)
T ss_dssp             TCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred             cCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence            5899999999999999974455567789999999999999999964  33345688999998765

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.16  E-value=3.1e-06  Score=73.12  Aligned_cols=63  Identities=8%  Similarity=0.108  Sum_probs=53.4

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~~  488 (512)
                      -..|+++|+++|+.| .|.+|.|+.+    .+|+|||+|.+.++|.+|+.. +..+.+.+|.|..+.+.
T Consensus        26 ~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~   93 (109)
T 2dnn_A           26 FSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATER   93 (109)
T ss_dssp             SSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHH
T ss_pred             CCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCcc
Confidence            368999999999999 8999999864    379999999999999999963 45566788999888654

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=98.16  E-value=3.6e-06  Score=75.44  Aligned_cols=66  Identities=14%  Similarity=0.366  Sum_probs=53.9

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-------CCceEEEEEcCHHHHHHHHHh--hcCCC---CCceEEEecCCCcc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-------KRGSALLEFEHADSARRAKLY--ELGLP---NCPLTLNYLNPDVE  490 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-------kkg~A~V~F~s~~~A~~Ai~~--~~~~~---~~pL~V~wa~~~~~  490 (512)
                      ..+|+++|+++|+.||.|.+|.|..+       .+|+|||+|.+.++|.+|+..  +..+.   ..++.|.++.++..
T Consensus        13 ~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~   90 (175)
T 3nmr_A           13 RTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKN   90 (175)
T ss_dssp             TTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCC
T ss_pred             CCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccccccc
Confidence            46999999999999999999998753       368999999999999999963  33322   57899998875543

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=98.15  E-value=2.6e-06  Score=71.09  Aligned_cols=61  Identities=13%  Similarity=0.215  Sum_probs=50.6

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNP   99 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~   99 (512)
                      ..+++.|+++|++||.|.+|.|. +.+|.|+|+|.+.++|+.|+..=.|  +-..+|+|.|-.+
T Consensus        38 ~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  100 (101)
T 2la4_A           38 FATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE  100 (101)
T ss_dssp             TCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred             ccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence            58999999999999999999776 5679999999999999999964333  3456788888543

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.15  E-value=4.7e-06  Score=69.27  Aligned_cols=65  Identities=17%  Similarity=0.221  Sum_probs=53.7

Q ss_pred             CCCHHHHH----HHHhhcCcccEEEeccCC--CceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLT----KIFSKYGKINILVISPKK--RGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~----~~f~kyG~v~~~v~~~k~--~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~  102 (512)
                      ..+++.|+    ++|++||.|..|.|...+  +|.|+|+|.+.++|..|+..-.|  +-..+|+|+|-.+...
T Consensus        20 ~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~~   92 (96)
T 2dgx_A           20 RLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGASG   92 (96)
T ss_dssp             TSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSSC
T ss_pred             CCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence            58999999    999999999999875322  89999999999999999974333  3467899999876643

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=98.15  E-value=1.7e-06  Score=70.56  Aligned_cols=65  Identities=18%  Similarity=0.283  Sum_probs=50.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.+ |..|+..  ..-+-..+|+|+|-.+....
T Consensus        12 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~~   83 (90)
T 2ki2_A           12 SATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKSL   83 (90)
T ss_dssp             TSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC------
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCCC
Confidence            589999999999999999998753     45899999999999 9999974  33355789999998765443

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=98.15  E-value=4.6e-06  Score=71.21  Aligned_cols=63  Identities=30%  Similarity=0.462  Sum_probs=52.9

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec--cCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS--PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~--~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|..|.|.  .+.+|.|+|+|.+.++|..|+..  -.-+...+|.|.|-.+.
T Consensus        19 ~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   85 (115)
T 3lqv_A           19 KITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN   85 (115)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence            58999999999999999999773  45589999999999999999974  33345678999998754

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=98.15  E-value=2.8e-06  Score=75.60  Aligned_cols=65  Identities=22%  Similarity=0.299  Sum_probs=54.6

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHH--hhhCCCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~--~e~g~~~nPl~~~~l~~~~~  102 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|+.|+.  +..-+...+|+|.|-.+...
T Consensus        58 ~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~  129 (135)
T 2lea_A           58 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP  129 (135)
T ss_dssp             SCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence            589999999999999999998743     568999999999999999996  34445678999999876543

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=98.15  E-value=2.2e-06  Score=77.30  Aligned_cols=65  Identities=22%  Similarity=0.281  Sum_probs=53.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~  102 (512)
                      ..|++.|+++|++||.|..|.|.     .+.+|.|+|+|.+.++|+.|+..  ..-+-..+|+|.|-.+...
T Consensus        50 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~  121 (156)
T 1h2v_Z           50 YTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKE  121 (156)
T ss_dssp             TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCCT
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence            58999999999999999999774     34579999999999999999973  3334568899999986533

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.14  E-value=3.4e-06  Score=71.78  Aligned_cols=66  Identities=18%  Similarity=0.307  Sum_probs=53.4

Q ss_pred             CCCHHHHHHHHhhcCccc--------EEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYGKIN--------ILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~--------~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~  102 (512)
                      ..+++.|+++|++||.|.        .|.|..     +.+|.|+|+|.+.++|..|+..  ..-+-..+|+|.|-.+...
T Consensus        26 ~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~  105 (113)
T 2cpe_A           26 SVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP  105 (113)
T ss_dssp             TCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCC
T ss_pred             CCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCC
Confidence            589999999999999998        565533     4479999999999999999973  3334568899999886654


Q ss_pred             c
Q psy3926         103 R  103 (512)
Q Consensus       103 ~  103 (512)
                      .
T Consensus       106 ~  106 (113)
T 2cpe_A          106 M  106 (113)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=98.14  E-value=1.7e-06  Score=69.57  Aligned_cols=44  Identities=32%  Similarity=0.431  Sum_probs=39.5

Q ss_pred             CHHHHHHHHhhcCcccEEEecc---CCCceEEEEeccHHHHHHHHHh
Q psy3926          40 TRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKLY   83 (512)
Q Consensus        40 ~~~~l~~~f~kyG~v~~~v~~~---k~~g~A~vef~~~~aa~~a~~~   83 (512)
                      +++.|+++|++||.|..|.|..   +.+|.|+|+|.+.++|..|+..
T Consensus        20 t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~   66 (81)
T 2krb_A           20 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN   66 (81)
T ss_dssp             HHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTT
T ss_pred             HHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHH
Confidence            7799999999999999998753   5589999999999999999964

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=98.14  E-value=2e-06  Score=74.49  Aligned_cols=63  Identities=24%  Similarity=0.246  Sum_probs=51.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|..|+.. ..-+...+|+|.|-.+.
T Consensus        47 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~  115 (124)
T 2jwn_A           47 GSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTN  115 (124)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSCC
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCCC
Confidence            489999999999999999997743     4589999999999999999931 12234678999998754

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.14  E-value=3.2e-06  Score=71.95  Aligned_cols=63  Identities=21%  Similarity=0.173  Sum_probs=52.1

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccC----CCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k----~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|..|.|...    .+|.|+|+|.+.++|+.|+..  ..-+...+|.|.|-.+.
T Consensus        26 ~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   94 (114)
T 2do0_A           26 KVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA   94 (114)
T ss_dssp             TCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence            5899999999999999999977543    368999999999999999974  22345678999998644

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=98.14  E-value=1.7e-06  Score=72.72  Aligned_cols=62  Identities=24%  Similarity=0.267  Sum_probs=50.9

Q ss_pred             CCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhhhC--CCC-CCcEEeecCCC
Q psy3926          39 YTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYELG--LPN-CPLTLNYLNPD  100 (512)
Q Consensus        39 Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g--~~~-nPl~~~~l~~~  100 (512)
                      .+++.|+++|++||.|..|.|.     .+.+|.|+|+|.+.++|..|+..=.|  +.. .+|.|.|..|.
T Consensus        24 ~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~   93 (100)
T 3ns6_A           24 VLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDV   93 (100)
T ss_dssp             HHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred             HHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchh
Confidence            5789999999999999999764     34679999999999999999964333  344 79999998653

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.12  E-value=3.9e-06  Score=71.52  Aligned_cols=63  Identities=17%  Similarity=0.294  Sum_probs=52.7

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHhhhCC----------CCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLYELGL----------PNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g~----------~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|..|.|..    +.+|.|+|+|.+.++|..|+..-.|.          ...||.|.|..|.
T Consensus        36 ~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~  112 (114)
T 1x5o_A           36 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPS  112 (114)
T ss_dssp             TCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCC
Confidence            589999999999999999997643    34689999999999999999854443          4678999998765

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=98.12  E-value=1.7e-06  Score=74.20  Aligned_cols=59  Identities=19%  Similarity=0.237  Sum_probs=48.4

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEee
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNY   96 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~   96 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|+.|+..=.|  +...+|+|+|
T Consensus        51 ~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~  116 (118)
T 2khc_A           51 EFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL  116 (118)
T ss_dssp             TCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence            589999999999999999997743     4489999999999999999974222  3356777776

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=98.12  E-value=2.7e-06  Score=66.84  Aligned_cols=58  Identities=12%  Similarity=0.271  Sum_probs=46.3

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEee
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNY   96 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~   96 (512)
                      ..+++.|+++|++||.|.++.|..     +.+|.|+|+|.+.++|..|+.. .|  +...+|.|.|
T Consensus        10 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~   74 (75)
T 1iqt_A           10 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKV   74 (75)
T ss_dssp             SCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEE
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence            589999999999999999997743     4589999999999999999964 33  2334555554

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=98.11  E-value=2.8e-06  Score=68.78  Aligned_cols=58  Identities=19%  Similarity=0.261  Sum_probs=46.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEee
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNY   96 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~   96 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|..|+.. .|  +-..+|.|.|
T Consensus        22 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~   86 (87)
T 3s7r_A           22 DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKK   86 (87)
T ss_dssp             TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEE
T ss_pred             CCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEe
Confidence            589999999999999999997642     3479999999999999999954 33  3334566655

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.11  E-value=5.8e-06  Score=70.41  Aligned_cols=66  Identities=18%  Similarity=0.300  Sum_probs=53.5

Q ss_pred             CCCHHHHHHHHhhcCccc----EEE-eccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKIN----ILV-ISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~----~~v-~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..|++.|+++|++||.|.    .+. +..+.+|.|+|+|.+.++|..|+..  -.-+-..||.|.|-.+...+
T Consensus        36 ~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~  108 (115)
T 2cpx_A           36 RVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQR  108 (115)
T ss_dssp             TCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSCC
T ss_pred             CCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCCC
Confidence            589999999999999994    443 3456789999999999999999974  33356789999998866443

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.11  E-value=2.6e-06  Score=72.73  Aligned_cols=66  Identities=23%  Similarity=0.268  Sum_probs=53.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|.+|.|.     .+.+|.|+|+|.+.++|..|+.. ..-+...+|+|.|-.+...+
T Consensus        36 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~~  107 (114)
T 2cq4_A           36 RIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNR  107 (114)
T ss_dssp             TCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHHHHHH
T ss_pred             CCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCCCccC
Confidence            58999999999999999999875     35679999999999999999931 22234678999998755443

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=98.10  E-value=2.5e-06  Score=73.44  Aligned_cols=63  Identities=16%  Similarity=0.085  Sum_probs=52.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|..|.|.     .+.+|.|+|+|.+.++|..|+..=.|  +...+|+|.|-...
T Consensus        17 ~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~   86 (110)
T 3s8s_A           17 NVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG   86 (110)
T ss_dssp             TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred             CCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            48999999999999999999663     35679999999999999999974333  45678999987644

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=98.10  E-value=3.6e-06  Score=71.49  Aligned_cols=59  Identities=29%  Similarity=0.474  Sum_probs=50.9

Q ss_pred             CCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926          39 YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        39 Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~  100 (512)
                      .+++.|+++|++||.|..|.|   .+|.|+|+|.+.++|..|+..-.|  +-..+|+|.|-.++
T Consensus        40 ~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~  100 (110)
T 1wf1_A           40 VKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP  100 (110)
T ss_dssp             CCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred             CCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence            799999999999999999999   579999999999999999964333  34678999998744

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.09  E-value=5.4e-06  Score=70.97  Aligned_cols=65  Identities=18%  Similarity=0.214  Sum_probs=53.5

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|..|+.. .|  +...+|.|.|-.+....
T Consensus        38 ~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~~  109 (116)
T 1x4b_A           38 ETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREES  109 (116)
T ss_dssp             CCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCCCC
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCccC
Confidence            589999999999999999997643     3479999999999999999965 33  34578999998766443

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=98.09  E-value=3.9e-06  Score=81.97  Aligned_cols=73  Identities=23%  Similarity=0.350  Sum_probs=60.6

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN  486 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~  486 (512)
                      ..++|-|.     +.+..+|+++|+++|+.||.|.+|.|..+ +|+|||+|.+.++|..|+.  ++..+.+.+|.|.|+.
T Consensus        21 ~~~~l~V~-----nLp~~~te~~l~~~F~~~G~i~~v~i~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~   94 (261)
T 3sde_A           21 QRCRLFVG-----NLPTDITEEDFKRLFERYGEPSEVFINRD-RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT   94 (261)
T ss_dssp             GGGEEEEE-----SCCTTCCHHHHHHHTGGGCCCSEEEEETT-TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CCCEEEEE-----CCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence            44567764     22236999999999999999999998654 7999999999999999997  4666778899999986


Q ss_pred             C
Q psy3926         487 P  487 (512)
Q Consensus       487 ~  487 (512)
                      +
T Consensus        95 ~   95 (261)
T 3sde_A           95 H   95 (261)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=98.09  E-value=3.5e-06  Score=70.87  Aligned_cols=61  Identities=16%  Similarity=0.348  Sum_probs=50.0

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN   98 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~   98 (512)
                      ..+++.|+++|++||.|..|.|..    +.+|.|+|+|.+.++|..|+..  ..-+...+|+|.|..
T Consensus        40 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~  106 (107)
T 3ulh_A           40 GVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT  106 (107)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence            589999999999999999987643    4478999999999999999973  333455789988853

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.09  E-value=6.9e-06  Score=70.30  Aligned_cols=63  Identities=24%  Similarity=0.250  Sum_probs=52.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC-CCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG-LPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g-~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|..|+..-.| +...+|+|.|-.+.
T Consensus        28 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~   96 (116)
T 2cqd_A           28 HTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLG   96 (116)
T ss_dssp             SCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTTT
T ss_pred             CCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEcccC
Confidence            589999999999999999997754     4579999999999999999964323 33568999998654

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.09  E-value=6e-06  Score=70.76  Aligned_cols=60  Identities=23%  Similarity=0.243  Sum_probs=50.7

Q ss_pred             HHHHHHHHhhcCcccEEEec-cCCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCCC
Q psy3926          41 RESLTKIFSKYGKINILVIS-PKKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLNPD  100 (512)
Q Consensus        41 ~~~l~~~f~kyG~v~~~v~~-~k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~~  100 (512)
                      ++.|+++|++||.|..|+|. ...+|.|+|+|.+.++|..|+..-.|.  -..||+|.|..|.
T Consensus        40 e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~  102 (112)
T 2dit_A           40 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGT  102 (112)
T ss_dssp             HHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSC
T ss_pred             HHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence            68999999999999999874 346899999999999999999754443  4678999998764

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=98.09  E-value=6.2e-06  Score=74.16  Aligned_cols=65  Identities=22%  Similarity=0.304  Sum_probs=54.3

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~  102 (512)
                      ..+++.|+++|++||.|..|.|.     .+.+|.|+|+|.+.++|+.|+..  ..-+...||.|.|-.+...
T Consensus        81 ~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~  152 (158)
T 2kn4_A           81 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP  152 (158)
T ss_dssp             TCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence            58999999999999999999774     35689999999999999999963  3335568999999886533

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=98.08  E-value=3.8e-06  Score=68.89  Aligned_cols=65  Identities=18%  Similarity=0.084  Sum_probs=49.4

Q ss_pred             CCCHHHHHHHHhhcC--cccEEEecc-----CCCceEEEEeccHHHHHHHHHhhh--CCCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYG--KINILVISP-----KKRGSALLEFEHADSARRAKLYEL--GLPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG--~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~--g~~~nPl~~~~l~~~~~  102 (512)
                      ..+++.|+++|++||  .|..+.|..     +.+|.|+|+|.+.++|+.|+..=.  -+...+|+|.|-.|+..
T Consensus        12 ~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~   85 (90)
T 3p5t_L           12 WTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEH   85 (90)
T ss_dssp             TCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-----
T ss_pred             CCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCcc
Confidence            479999999999999  999986532     457999999999999999996433  35567899999886644

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.08  E-value=3.4e-06  Score=70.84  Aligned_cols=65  Identities=22%  Similarity=0.283  Sum_probs=53.3

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|..|+.. .|  +...+|+|.|-.+....
T Consensus        27 ~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~~   98 (105)
T 2dh8_A           27 STTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRGMQ   98 (105)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSSCC
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCCCC
Confidence            589999999999999999997744     3468999999999999999975 44  34567999998766443

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.07  E-value=2.5e-06  Score=68.79  Aligned_cols=49  Identities=24%  Similarity=0.296  Sum_probs=42.0

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG   86 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g   86 (512)
                      ..+++.|+++|++||.|..+.|..     +.+|.|+|+|.+.++|..|+..=.|
T Consensus        16 ~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g   69 (85)
T 1x4e_A           16 GTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA   69 (85)
T ss_dssp             TCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcC
Confidence            589999999999999999997643     3479999999999999999974333

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.07  E-value=6.3e-06  Score=68.57  Aligned_cols=62  Identities=19%  Similarity=0.240  Sum_probs=52.1

Q ss_pred             CCCHHHHHHHHhhc--CcccEEEeccCCCceEEEEeccHHHHHHHHHhhh--CCCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKY--GKINILVISPKKRGSALLEFEHADSARRAKLYEL--GLPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~ky--G~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~--g~~~nPl~~~~l~~~~~  102 (512)
                      ..+++.|+++|++|  |.|..|.+.   +|.|+|+|.+.++|..|+..-.  -+...+|+|.|-.+...
T Consensus        26 ~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~   91 (99)
T 2cpd_A           26 STSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK   91 (99)
T ss_dssp             TCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred             CCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence            58999999999999  999998775   6899999999999999997322  23467899999886644

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=98.05  E-value=6.3e-06  Score=66.74  Aligned_cols=62  Identities=21%  Similarity=0.207  Sum_probs=50.4

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|..|+ .-.|  +...+|+|.|-.+.
T Consensus        17 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~   85 (89)
T 3ucg_A           17 GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN   85 (89)
T ss_dssp             TCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred             CCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence            589999999999999999997643     44899999999999999999 4333  34567899887543

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=98.05  E-value=5.7e-06  Score=70.65  Aligned_cols=63  Identities=16%  Similarity=0.285  Sum_probs=51.3

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhh-hCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYE-LGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e-~g~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|+.|+..- .-+-..+|.|.|-.+.
T Consensus        36 ~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~~  104 (109)
T 2rs2_A           36 QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR  104 (109)
T ss_dssp             TCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCCC
T ss_pred             CCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccCC
Confidence            589999999999999999997743     45799999999999999999631 1223468899988755

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=98.05  E-value=2e-06  Score=76.45  Aligned_cols=74  Identities=16%  Similarity=0.163  Sum_probs=57.1

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCee--EEEEccCC----CceEEEEEcCHHHHHHHHHh-hcCCCCCceE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKIN--ILVISPKK----RGSALLEFEHADSARRAKLY-ELGLPNCPLT  481 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~--~V~i~~~k----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~  481 (512)
                      ..++|.|.     +.+-..|+++|+++|+.|| |.  +|.|+.++    +|+|||+|.+.++|.+||.. +..+.+.+|.
T Consensus        41 ~~~~lfVg-----nLp~~~te~dL~~~F~~~~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~  114 (126)
T 2hgm_A           41 NDGFVRLR-----GLPFGCTKEEIVQFFSGLE-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE  114 (126)
T ss_dssp             SCCEEEEE-----CCCTTCCHHHHHHHTTTSC-EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCC
T ss_pred             CCCEEEEe-----CCCCCCCHHHHHHHHhcCC-ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEE
Confidence            34566664     2224699999999999995 65  88887643    79999999999999999974 4556678899


Q ss_pred             EEecCCC
Q psy3926         482 LNYLNPD  488 (512)
Q Consensus       482 V~wa~~~  488 (512)
                      |.++.++
T Consensus       115 V~~a~~~  121 (126)
T 2hgm_A          115 VFKSSQE  121 (126)
T ss_dssp             CEEECHH
T ss_pred             EEECCHH
Confidence            9887543

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=98.05  E-value=9.2e-06  Score=75.72  Aligned_cols=66  Identities=15%  Similarity=0.340  Sum_probs=55.3

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHH--hhhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~--~e~g~~~nPl~~~~l~~~~~~  103 (512)
                      +.+++.|+++|++||.|..|.|..    +.+|.|+|+|.+.++|..|+.  +..-+-..||+|.|..+....
T Consensus        99 ~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~~~  170 (177)
T 2f3j_A           99 GVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDL  170 (177)
T ss_dssp             CCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGGGG
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence            589999999999999999998753    457999999999999999998  344456789999998765443

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.04  E-value=6.1e-06  Score=70.08  Aligned_cols=61  Identities=11%  Similarity=0.128  Sum_probs=51.3

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCC-----CCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPN-----CPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~-----nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||+|..|.|...  |.|+|||.+.++|..|+..-.|  +..     .+|+|.|-.+.
T Consensus        26 ~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~   93 (108)
T 1x4c_A           26 SGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR   93 (108)
T ss_dssp             SCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCC
T ss_pred             CCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCC
Confidence            5899999999999999999987655  9999999999999999974333  222     68999998765

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.04  E-value=3e-06  Score=72.45  Aligned_cols=64  Identities=20%  Similarity=0.264  Sum_probs=52.6

Q ss_pred             CCCHHHHH---HHHhhcCcccEEEecc--------CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCc
Q psy3926          38 VYTRESLT---KIFSKYGKINILVISP--------KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDV  101 (512)
Q Consensus        38 ~Y~~~~l~---~~f~kyG~v~~~v~~~--------k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~  101 (512)
                      ..+++.|+   ++|++||.|..|.|..        +.+|.|+|+|.+.++|+.|+..  -.-+-..+|+|.|-.+..
T Consensus        26 ~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~  102 (111)
T 2cpi_A           26 RLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY  102 (111)
T ss_dssp             TTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred             CCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence            47899999   9999999999997753        3348999999999999999974  222456789999987664

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=98.01  E-value=5.6e-06  Score=85.51  Aligned_cols=61  Identities=18%  Similarity=0.347  Sum_probs=50.3

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcC---CCCC--ceEEEecCC
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELG---LPNC--PLTLNYLNP  487 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~---~~~~--pL~V~wa~~  487 (512)
                      .+||++|+++|++||.|.+|.|.. .||+|||+|.+.++|.+||..  +..   ..+.  +|-|.|+..
T Consensus        31 ~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~   98 (345)
T 3tht_A           31 GVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEK   98 (345)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECSS
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEeec
Confidence            589999999999999999998876 579999999999999999974  322   2223  788888853

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=98.00  E-value=3.2e-06  Score=69.71  Aligned_cols=64  Identities=19%  Similarity=0.269  Sum_probs=52.4

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDV  101 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~  101 (512)
                      ..+++.|+++|++||+|..+....+.+|.|+|+|.+.++|..|+..  ..-+...+|.|.|-.+..
T Consensus        27 ~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~   92 (96)
T 1fjc_A           27 NITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG   92 (96)
T ss_dssp             SCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred             CCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence            5899999999999999987734456689999999999999999973  223456789999987653

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=98.00  E-value=6.4e-06  Score=75.29  Aligned_cols=64  Identities=20%  Similarity=0.303  Sum_probs=53.4

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccC-----CCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDV  101 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k-----~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~  101 (512)
                      ..+++.|+.+|++||.|..|.|...     .+|.|+|+|.+.++|..|+..-.|  +...||.|.|-.+..
T Consensus        83 ~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~  153 (165)
T 1rk8_A           83 EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG  153 (165)
T ss_dssp             TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC
T ss_pred             CCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence            5899999999999999999987543     379999999999999999974333  456889999987543

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=97.97  E-value=6.2e-06  Score=69.05  Aligned_cols=61  Identities=23%  Similarity=0.254  Sum_probs=49.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc------CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP------KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~------k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++|| |..|.|..      +.+|.|+|+|.+.++|..|+ .-.|  +-..+|.|.|-.+.
T Consensus        30 ~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~   98 (100)
T 2j76_E           30 DVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQA   98 (100)
T ss_dssp             CCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCS
T ss_pred             CCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCC
Confidence            489999999999999 99998744      34899999999999999999 3222  33567888887654

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=97.96  E-value=1.2e-05  Score=69.76  Aligned_cols=62  Identities=11%  Similarity=0.085  Sum_probs=52.1

Q ss_pred             CCCHHHHHHHHhhcC-cccEEEec-cCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCC
Q psy3926          38 VYTRESLTKIFSKYG-KINILVIS-PKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNP   99 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG-~v~~~v~~-~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~   99 (512)
                      ..+++.|+++|++|| .|..+.|. .+.+|.|+|||.+.++|+.|+..=.|  +-..+|.|.|-.+
T Consensus        39 ~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~  104 (111)
T 2jvr_A           39 GCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN  104 (111)
T ss_dssp             CCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred             CCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence            589999999999999 99999774 56789999999999999999964222  3456899998763

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=97.96  E-value=1e-05  Score=68.09  Aligned_cols=59  Identities=15%  Similarity=0.169  Sum_probs=49.0

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeec
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYL   97 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l   97 (512)
                      .-|++.|+++|++||+|.++.|-. .+|-|+|||.+.+.|+.|++.  -+=+-..||.+.+-
T Consensus        18 ~~te~~L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A   78 (89)
T 2wbr_A           18 QIDGPTLRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP   78 (89)
T ss_dssp             TCCCHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred             cCCHHHHHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence            578999999999999999997754 589999999999999999974  33344567777765

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.95  E-value=5.4e-06  Score=69.13  Aligned_cols=65  Identities=23%  Similarity=0.276  Sum_probs=51.4

Q ss_pred             CCCHHHHHHHHhhcCcccEEEe--ccCCCceEEEEeccHHHHHHHHHhh--hCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVI--SPKKRGSALLEFEHADSARRAKLYE--LGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~--~~k~~g~A~vef~~~~aa~~a~~~e--~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||.|. |+.  ..+.+|.|+|+|.+.++|..|+..-  .-+...+|+|.|-.+....
T Consensus        26 ~~t~~~l~~~F~~~g~v~-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~   94 (101)
T 2fc9_A           26 SATEETLQEVFEKATFIK-VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSP   94 (101)
T ss_dssp             TCCHHHHHHHCSSCSEEE-CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCCC
T ss_pred             CCCHHHHHHHHHhCCEEE-EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCCC
Confidence            489999999999999993 332  2356899999999999999999732  2245689999998866443

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=97.95  E-value=1e-05  Score=69.80  Aligned_cols=59  Identities=12%  Similarity=0.120  Sum_probs=48.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLN   98 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~   98 (512)
                      ..+++.|+++|++||+|..|.|...  |.|+|||.+.++|+.|+..=.|  +-..+|++.|+.
T Consensus        27 ~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~   87 (115)
T 3beg_B           27 SGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR   87 (115)
T ss_dssp             SCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence            4789999999999999999988655  9999999999999999975333  345676665554

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=97.94  E-value=7.1e-06  Score=69.10  Aligned_cols=60  Identities=17%  Similarity=0.243  Sum_probs=48.2

Q ss_pred             CCCHHHHHHHHhhcCc--ccEEEec-----cCCCceEEEEeccHHHHHHHHHhhhCC------CCCCcEEeec
Q psy3926          38 VYTRESLTKIFSKYGK--INILVIS-----PKKRGSALLEFEHADSARRAKLYELGL------PNCPLTLNYL   97 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~--v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g~------~~nPl~~~~l   97 (512)
                      ..|+|.|+++|++||.  |.+|.|.     .+.||-|.|+|.+.++|..|++.=.|.      -..||.|+|-
T Consensus        20 ~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~A   92 (95)
T 2lkz_A           20 HTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFA   92 (95)
T ss_dssp             TCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEEC
T ss_pred             cCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEc
Confidence            5799999999999995  6788653     356899999999999999999865553      2457777774

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=97.92  E-value=1.5e-05  Score=71.47  Aligned_cols=65  Identities=18%  Similarity=0.203  Sum_probs=53.9

Q ss_pred             CCCCHHHHHHHhhcc----C-------CeeEEEEccCCCceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEecCCCcc
Q psy3926         425 DVYTRESLTKIFSKY----G-------KINILVISPKKRGSALLEFEHADSARRAKL-YELGLPNCPLTLNYLNPDVE  490 (512)
Q Consensus       425 ~~~te~~L~~iFs~f----G-------~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa~~~~~  490 (512)
                      ..+|+++|+++|+.|    |       .|.++.+..+ +|+|||+|.+.++|.+|+. ++..+.+.+|.|.|+.+..+
T Consensus        14 ~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~   90 (172)
T 2g4b_A           14 FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP   90 (172)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-TTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCC
T ss_pred             cccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-CCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCC
Confidence            369999999999999    6       7777777544 8999999999999999994 25566788999999876543

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=97.91  E-value=1.3e-05  Score=68.70  Aligned_cols=60  Identities=25%  Similarity=0.263  Sum_probs=49.8

Q ss_pred             CHHHHHHHHhhcCcccEEEecc------CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCC
Q psy3926          40 TRESLTKIFSKYGKINILVISP------KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNP   99 (512)
Q Consensus        40 ~~~~l~~~f~kyG~v~~~v~~~------k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~   99 (512)
                      +++.|++.|++||.|.+|.|..      +.+|.|.|+|.+.++|..|+..=.|  ....+|.+.|..+
T Consensus        26 ~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~   93 (105)
T 2pe8_A           26 LEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL   93 (105)
T ss_dssp             CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred             HHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence            6899999999999999998753      4589999999999999999975444  3456788888753

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=97.91  E-value=1.2e-05  Score=72.32  Aligned_cols=62  Identities=16%  Similarity=0.113  Sum_probs=50.9

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcC----H-HH---HHHHHH----hhcCCCCCceEEEecC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEH----A-DS---ARRAKL----YELGLPNCPLTLNYLN  486 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s----~-~~---A~~Ai~----~~~~~~~~pL~V~wa~  486 (512)
                      -.++++.|+++|+.||.|.++.+..|+     +|+|||+|.+    . ++   |.+||.    +++.+.+.+|.|..-+
T Consensus        16 ~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~   94 (136)
T 2j8a_A           16 TNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNK   94 (136)
T ss_dssp             CCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred             CCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence            368999999999999999999998764     8999999996    2 22   888887    5677788999998654

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=97.91  E-value=5.1e-06  Score=75.10  Aligned_cols=79  Identities=16%  Similarity=0.085  Sum_probs=60.3

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEc----cCCCceEEEEEcCHHHHHHHHH-hhcCCCCCceEE
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVIS----PKKRGSALLEFEHADSARRAKL-YELGLPNCPLTL  482 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~----~~kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V  482 (512)
                      ...++|-|.=     .+..+|+++|+++|+.||.|..+.|.    ...+|+|||+|.+.++|.+|++ ++..+.+.+|.|
T Consensus        11 ~~~~~l~V~n-----Lp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v   85 (175)
T 1fje_B           11 TTPFNLFIGN-----LNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL   85 (175)
T ss_dssp             SSSEEEEEEC-----CCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEE
T ss_pred             CCCcEEEEeC-----CCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEE
Confidence            3455666652     22369999999999999988763333    2358999999999999999996 356677899999


Q ss_pred             EecCCCccc
Q psy3926         483 NYLNPDVER  491 (512)
Q Consensus       483 ~wa~~~~~r  491 (512)
                      .|+.++...
T Consensus        86 ~~~~~~~~~   94 (175)
T 1fje_B           86 EKPKGRDSK   94 (175)
T ss_dssp             ECCCCSSCS
T ss_pred             ecCCCcccc
Confidence            999876543

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=97.91  E-value=1.4e-05  Score=70.08  Aligned_cols=59  Identities=29%  Similarity=0.305  Sum_probs=48.6

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEee
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNY   96 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~   96 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|..|+..-.|  +...+|+|.|
T Consensus        74 ~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~  139 (140)
T 2ku7_A           74 EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL  139 (140)
T ss_dssp             TCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred             CCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence            589999999999999999998743     4589999999999999999964222  3356788876

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=97.90  E-value=3.1e-06  Score=70.69  Aligned_cols=64  Identities=13%  Similarity=0.228  Sum_probs=51.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHhhhCCCCCCcEEeecCCCc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPDV  101 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g~~~nPl~~~~l~~~~  101 (512)
                      ..+++.|+++|++||.|..|.|..    +.+|.|+|+|.+.++|..|+.+...+-..+|.|.|-.+..
T Consensus        20 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~~~   87 (102)
T 2xs2_A           20 RMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIRKQ   87 (102)
T ss_dssp             TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEECC
T ss_pred             CCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCcCc
Confidence            589999999999999999997643    4579999999999999999973333445688888876443

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.89  E-value=1.8e-05  Score=66.33  Aligned_cols=64  Identities=22%  Similarity=0.261  Sum_probs=52.0

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec------cCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS------PKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~------~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++|| |..|.|.      .+.+|.|+|+|.+.++|..|+ .-.|  +-..+|.|.|-.+....
T Consensus        26 ~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~   97 (104)
T 1wi8_A           26 DVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQDK   97 (104)
T ss_dssp             SCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCCCC
T ss_pred             cCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCCCC
Confidence            489999999999999 9999774      344899999999999999999 4333  34568999998766443

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.86  E-value=2.8e-05  Score=64.08  Aligned_cols=62  Identities=13%  Similarity=0.140  Sum_probs=47.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|..|++.......|+|+|.+.++|..|+. -.|.  -..+|.|.|-.+.
T Consensus        19 ~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~   82 (94)
T 2e5g_A           19 GVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK   82 (94)
T ss_dssp             TCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence            589999999999999999986543322289999999999999996 3332  3457888776543

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=97.86  E-value=1.3e-05  Score=73.56  Aligned_cols=64  Identities=13%  Similarity=0.238  Sum_probs=53.1

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCC-----CceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDV  101 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~-----~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~  101 (512)
                      ..+++.|+++|++||.|..|.|...+     +|.|+|+|.+.++|..|+..=.|  +...+|.|.|-.|..
T Consensus       125 ~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~  195 (198)
T 2yh0_A          125 YLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA  195 (198)
T ss_dssp             TCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred             CCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence            57999999999999999999875443     79999999999999999974233  346789999987663

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=97.85  E-value=2.2e-05  Score=67.20  Aligned_cols=60  Identities=23%  Similarity=0.304  Sum_probs=49.1

Q ss_pred             CHHHHHHHHhhcCcccEEEecc-------CCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCC
Q psy3926          40 TRESLTKIFSKYGKINILVISP-------KKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLNP   99 (512)
Q Consensus        40 ~~~~l~~~f~kyG~v~~~v~~~-------k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~   99 (512)
                      .++.|++.|+|||.|.+|.|..       +.+|.|.|+|.+.++|..|+..=.|.  ...+|+++|..+
T Consensus        28 ~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~   96 (105)
T 3v4m_A           28 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP   96 (105)
T ss_dssp             HHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred             HHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence            3579999999999999998853       35799999999999999999764443  356888888753

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=97.85  E-value=6.2e-06  Score=67.73  Aligned_cols=60  Identities=20%  Similarity=0.179  Sum_probs=46.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeec
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYL   97 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l   97 (512)
                      ..+++.|+++|++||.|..+.|..     +.+|.|+|+|.+.++|..|+..-.|  +-..+|.|++-
T Consensus        26 ~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a   92 (95)
T 2ek1_A           26 TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP   92 (95)
T ss_dssp             TCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             CCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence            589999999999999998665432     4579999999999999999974233  34566777753

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=97.83  E-value=2e-05  Score=67.31  Aligned_cols=56  Identities=16%  Similarity=0.286  Sum_probs=43.1

Q ss_pred             HHHHHHH-hhcCcccEEEeccC----CCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeec
Q psy3926          42 ESLTKIF-SKYGKINILVISPK----KRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYL   97 (512)
Q Consensus        42 ~~l~~~f-~kyG~v~~~v~~~k----~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l   97 (512)
                      +.|++.| ++||.|.+|.|...    .+|.|.|+|.+.++|..|+..=.|.  -..||+|.|.
T Consensus        41 edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s  103 (104)
T 1jmt_A           41 EEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS  103 (104)
T ss_dssp             HHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred             HHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence            3444555 99999999988653    4899999999999999999765553  4557777764

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=97.83  E-value=1.3e-05  Score=75.73  Aligned_cols=61  Identities=13%  Similarity=0.178  Sum_probs=49.6

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec----cCCCceEEEEeccHHHHHHHHHhhhC-CCCCCcEEeecC
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS----PKKRGSALLEFEHADSARRAKLYELG-LPNCPLTLNYLN   98 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~----~k~~g~A~vef~~~~aa~~a~~~e~g-~~~nPl~~~~l~   98 (512)
                      ..+++.|+++|++||.|..|.|.    .+.+|.|+|||.+.++|..|+....+ +-..||.|.|-.
T Consensus       120 ~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~  185 (193)
T 2voo_A          120 DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD  185 (193)
T ss_dssp             TCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETT
T ss_pred             cCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhH
Confidence            48999999999999999999775    34579999999999999999964322 234678888754

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.81  E-value=9.5e-06  Score=67.13  Aligned_cols=63  Identities=19%  Similarity=0.151  Sum_probs=49.9

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|..+++.     .+.+|.|+|+|.+.++|+.|+..=.|  +-..+|+|.|-.++
T Consensus        26 ~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~   95 (98)
T 2cqp_A           26 TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP   95 (98)
T ss_dssp             TCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred             CCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence            58999999999999999865432     13479999999999999999964332  34678999997644

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=97.80  E-value=3.6e-05  Score=67.56  Aligned_cols=62  Identities=13%  Similarity=0.191  Sum_probs=49.4

Q ss_pred             CCCHHHHHHHHhhcCcccE--EEec-----cCCCceEEEEeccHHHHHHHHHhhhCC------CCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINI--LVIS-----PKKRGSALLEFEHADSARRAKLYELGL------PNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~--~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g~------~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|..  |.|.     .+.+|.|+|+|.+. +|..|+..=.|.      ...+|.|.|-.+.
T Consensus        34 ~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~  108 (131)
T 2m2b_A           34 HSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGS  108 (131)
T ss_dssp             TCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCS
T ss_pred             CCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCC
Confidence            4799999999999999954  6543     35589999999999 999998754443      4568899988765

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=97.79  E-value=3.6e-05  Score=67.10  Aligned_cols=60  Identities=13%  Similarity=0.168  Sum_probs=49.8

Q ss_pred             CHHHHHHHHhhcCcccEEEeccC-CCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCC
Q psy3926          40 TRESLTKIFSKYGKINILVISPK-KRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNP   99 (512)
Q Consensus        40 ~~~~l~~~f~kyG~v~~~v~~~k-~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~   99 (512)
                      -++.|++.|+|||.|.+|+|... .+|.|.|+|.+.++|..|+..=.|  ....+|+++|..+
T Consensus        30 l~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~   92 (114)
T 3s6e_A           30 IKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL   92 (114)
T ss_dssp             HHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred             HHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence            35789999999999999988653 489999999999999999975444  3467899999863

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=97.78  E-value=2.2e-05  Score=65.38  Aligned_cols=63  Identities=17%  Similarity=0.113  Sum_probs=51.1

Q ss_pred             CCCHHHHHHHHhhcCcccEEEe----ccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCc
Q psy3926          38 VYTRESLTKIFSKYGKINILVI----SPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDV  101 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~----~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~  101 (512)
                      ..+++.|+++|++||.|...+|    ..+.+|.|+|+|.+.++|..|+. -.|  +...+|+|.|-.+..
T Consensus        28 ~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~   96 (101)
T 1fj7_A           28 NKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRD   96 (101)
T ss_dssp             TSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCC
T ss_pred             CCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCC
Confidence            5899999999999999998433    23668999999999999999997 333  236789999987653

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.77  E-value=4e-05  Score=64.10  Aligned_cols=64  Identities=20%  Similarity=0.271  Sum_probs=51.1

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++|| |.+|.|..     +.+|.|+|+|.+.++|..|+ .-.|  +...+|+|.|-.+....
T Consensus        26 ~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~   96 (103)
T 2dng_A           26 NTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRKQD   96 (103)
T ss_dssp             TCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCCCC
T ss_pred             CCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCCCC
Confidence            589999999999998 99997643     34799999999999999999 3222  23568999998766443

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=96.95  E-value=3.7e-06  Score=72.09  Aligned_cols=66  Identities=21%  Similarity=0.295  Sum_probs=53.2

Q ss_pred             CCCHHHHHHHHhhcCcccE--------EEec-----cCCCceEEEEeccHHHHHHHHH--hhhCCCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYGKINI--------LVIS-----PKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~--------~v~~-----~k~~g~A~vef~~~~aa~~a~~--~e~g~~~nPl~~~~l~~~~~  102 (512)
                      ..+++.|+++|++||.|..        |.|.     .+.+|.|+|+|.+.++|..|+.  +..-+...+|.|.|-.+...
T Consensus        18 ~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~   97 (116)
T 2lcw_A           18 NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRAD   97 (116)
Confidence            4789999999999999988        5443     2457999999999999999997  34445578999999886654


Q ss_pred             c
Q psy3926         103 R  103 (512)
Q Consensus       103 ~  103 (512)
                      .
T Consensus        98 ~   98 (116)
T 2lcw_A           98 F   98 (116)
Confidence            4

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.75  E-value=0.00012  Score=61.70  Aligned_cols=79  Identities=18%  Similarity=0.275  Sum_probs=60.2

Q ss_pred             CCCcceeEEEeecCCCCCCCCCH---HHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH-hhcCCCCCceEE
Q psy3926         407 NPENYRLRIRWKSSSTDTDVYTR---ESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL-YELGLPNCPLTL  482 (512)
Q Consensus       407 ~~~~~~lkVKWk~~~~~~~~~te---~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V  482 (512)
                      .+.+-||.|.-....+...-+++   ..|...|+.||.|..|.|..++   +||+|.+.++|.+||. ++....+..|+|
T Consensus         4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~---~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV   80 (91)
T 2dnr_A            4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK---MWVTFLEGSSALNVLSLNGKELLNRTITI   80 (91)
T ss_dssp             CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS---EEEEESSHHHHHHGGGGTTCEETTEEEEE
T ss_pred             CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC---EEEEECChHHHHHHHhcCCeEeCCeEEEE
Confidence            45667888877654221123453   5577889999999999998764   9999999999999997 466677889999


Q ss_pred             EecCCC
Q psy3926         483 NYLNPD  488 (512)
Q Consensus       483 ~wa~~~  488 (512)
                      +.+.+.
T Consensus        81 ~lkt~d   86 (91)
T 2dnr_A           81 ALKSPS   86 (91)
T ss_dssp             EECCCS
T ss_pred             EeCCCC
Confidence            988753

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=97.74  E-value=2.6e-05  Score=71.31  Aligned_cols=63  Identities=13%  Similarity=0.107  Sum_probs=51.9

Q ss_pred             CCCHHHHHHHHhhcC--cccEEEec-----cCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYG--KINILVIS-----PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG--~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||  .|..|.|.     .+.+|-|+|+|.+.++|+.|+..  ..-+-..+|.|.|-.+.
T Consensus        66 ~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~  137 (156)
T 3n9u_C           66 WTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ  137 (156)
T ss_dssp             TCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred             CCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence            589999999999999  99999663     34579999999999999999975  23344678999988654

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=97.74  E-value=3.6e-05  Score=75.67  Aligned_cols=60  Identities=18%  Similarity=0.267  Sum_probs=49.0

Q ss_pred             CHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC--------------CCCCcEEeecCCC
Q psy3926          40 TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGL--------------PNCPLTLNYLNPD  100 (512)
Q Consensus        40 ~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~--------------~~nPl~~~~l~~~  100 (512)
                      +++.|+++|++||+|..|.|.. .+|.|+|+|.+.++|+.|+..=.|.              ...+|.|.|-.+.
T Consensus       156 tEe~L~~~F~~fG~I~~v~v~~-~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~  229 (240)
T 3u1l_A          156 IESRIRFVFSRLGDIDRIRYVE-SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANED  229 (240)
T ss_dssp             HHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred             cHHHHHHHHHccCCEEEEEEEC-CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence            6999999999999999997654 4799999999999999998753332              2458999998754

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.74  E-value=4.7e-05  Score=64.16  Aligned_cols=62  Identities=13%  Similarity=0.170  Sum_probs=49.0

Q ss_pred             CCCHHHHHHHHhhcCcccE-EEec----cCCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINI-LVIS----PKKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~-~v~~----~k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~~  100 (512)
                      .-+++.|+++|++||.|.+ |.|.    .+.+|.|+|||.+.++|..|+.. .|.  -..+|.|.+-.+.
T Consensus        26 ~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~   94 (104)
T 1wg5_A           26 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRA   94 (104)
T ss_dssp             TCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTT
T ss_pred             CCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHH
Confidence            4799999999999999987 6553    35679999999999999999975 442  2456788776543

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.72  E-value=1.9e-05  Score=67.66  Aligned_cols=63  Identities=16%  Similarity=0.193  Sum_probs=51.2

Q ss_pred             CCCHHHHHHHHhhcCcc-cEEEec----cCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCc
Q psy3926          38 VYTRESLTKIFSKYGKI-NILVIS----PKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDV  101 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v-~~~v~~----~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~  101 (512)
                      ..+++.|+++|++||.| ..|.|.    .+.+|.|+|+|.+.++|..|+.. .|  +-..+|.|.|..+..
T Consensus        26 ~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~   95 (114)
T 2cpy_A           26 SITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLED   95 (114)
T ss_dssp             TSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHHH
T ss_pred             cCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHHH
Confidence            47999999999999999 667553    35689999999999999999865 43  235689999987554

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=97.66  E-value=3.1e-05  Score=63.11  Aligned_cols=60  Identities=8%  Similarity=0.163  Sum_probs=50.6

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNP   99 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~   99 (512)
                      ..+++.|+++|++| .|..+.|. +.+|.|+|+|.+.++|+.|+..-.|  +...+|+|.|-..
T Consensus        16 ~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~   77 (88)
T 1wg1_A           16 DSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT   77 (88)
T ss_dssp             SCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             CCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence            58999999999999 99999774 6789999999999999999974333  3467899998643

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=97.66  E-value=3.8e-05  Score=74.39  Aligned_cols=63  Identities=19%  Similarity=0.140  Sum_probs=52.3

Q ss_pred             CCCHHHHHHHHhhcC--cccEEEec-----cCCCceEEEEeccHHHHHHHHH--hhhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYG--KINILVIS-----PKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG--~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~--~e~g~~~nPl~~~~l~~~  100 (512)
                      ..|++.|+++|++||  .|..|.|.     .+.||.|+|+|.+.++|..|+.  +..-+-..+|+|.|-.+.
T Consensus        79 ~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~  150 (229)
T 3q2s_C           79 WTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQ  150 (229)
T ss_dssp             TCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHH
T ss_pred             CCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCC
Confidence            589999999999999  99999763     2467999999999999999996  334455679999998654

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=97.65  E-value=3.9e-05  Score=68.09  Aligned_cols=63  Identities=16%  Similarity=0.291  Sum_probs=51.1

Q ss_pred             CCCHHHHHHHHhhcCcccE--------EEe--ccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINI--------LVI--SPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~--------~v~--~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      ..|++.|+++|++||.|..        |.+  ..+.+|.|+|+|.+.++|..|+..  -.-+...||.|.|-.+.
T Consensus        56 ~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~  130 (143)
T 3egn_A           56 HVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSA  130 (143)
T ss_dssp             TCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCS
T ss_pred             CCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence            5899999999999999976        332  347789999999999999999974  23344678999998654

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.64  E-value=3.7e-05  Score=65.91  Aligned_cols=57  Identities=16%  Similarity=0.118  Sum_probs=44.1

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec--------cCCCceEEEEeccHHHHHHHHHhhhCCCCCCcEEe
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS--------PKKRGSALLEFEHADSARRAKLYELGLPNCPLTLN   95 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~--------~k~~g~A~vef~~~~aa~~a~~~e~g~~~nPl~~~   95 (512)
                      ..+++.|+++|++||.|. +++.        .+.+|.|+|||.+.++|..|+..-.++-...|.+.
T Consensus        19 ~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~   83 (114)
T 2dnl_A           19 DIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCV   83 (114)
T ss_dssp             TCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEE
T ss_pred             CCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEec
Confidence            589999999999999999 5442        25589999999999999999975434333444444

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.59  E-value=6e-05  Score=62.68  Aligned_cols=66  Identities=21%  Similarity=0.309  Sum_probs=50.9

Q ss_pred             CCCHHHHHHHHhhcCcccEEEe--ccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVI--SPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~--~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++|+.|.-+.-  ..+.+|.|+|+|.+.++|..|+..  ..-+-..+|+|.|-.+...+
T Consensus        26 ~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~   95 (102)
T 2fc8_A           26 DTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEG   95 (102)
T ss_dssp             TCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCSS
T ss_pred             ccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCCC
Confidence            5899999999999986654332  234579999999999999999974  33345678999998876544

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=97.52  E-value=0.00013  Score=69.25  Aligned_cols=61  Identities=15%  Similarity=0.144  Sum_probs=52.9

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccC---------CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPK---------KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN  486 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~---------kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~  486 (512)
                      ...+++|++.|++||.|.+|.|+.+         .+|++||+|.+.++|.+||.  ++..+.+.+|.|.|+.
T Consensus       140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~  211 (222)
T 3dxb_A          140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD  211 (222)
T ss_dssp             TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred             HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence            4567899999999999999999732         36999999999999999997  4777888999999974

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.51  E-value=4.9e-05  Score=66.00  Aligned_cols=63  Identities=14%  Similarity=0.198  Sum_probs=49.3

Q ss_pred             CCCHHHHHHHHhhcCcccE-EEec----cCCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINI-LVIS----PKKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~-~v~~----~k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l~~~  100 (512)
                      ..|++.|+++|++||.|.+ ++|.    .+.+|.|+|+|.+.++|..|+.. -.-+-..+|.|.|..+.
T Consensus        36 ~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~  104 (124)
T 1wel_A           36 EAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKK  104 (124)
T ss_dssp             TCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHH
T ss_pred             CCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCHH
Confidence            4899999999999999987 3332    24579999999999999999962 11234568999998654

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=97.51  E-value=0.0001  Score=78.15  Aligned_cols=65  Identities=23%  Similarity=0.294  Sum_probs=53.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~  102 (512)
                      ..|++.|..+|++||.|..|.|.     .+.+|.|+|+|.+.++|..|+..-.|  +...+|+|.|-.+...
T Consensus       113 ~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~  184 (437)
T 3pgw_S          113 DTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTV  184 (437)
T ss_pred             CCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence            58999999999999999999663     34689999999999999999964233  3467899999876533

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=97.49  E-value=0.0001  Score=64.53  Aligned_cols=59  Identities=17%  Similarity=0.196  Sum_probs=47.6

Q ss_pred             CHHHHHHHHhhcCcccEEEeccC---------CCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecC
Q psy3926          40 TRESLTKIFSKYGKINILVISPK---------KRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLN   98 (512)
Q Consensus        40 ~~~~l~~~f~kyG~v~~~v~~~k---------~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~   98 (512)
                      -++.|++.|+|||.|.+|+|...         .+|.|.|+|.+.++|..|+..=.|.  ...+|++++..
T Consensus        38 leedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~  107 (118)
T 3ue2_A           38 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD  107 (118)
T ss_dssp             HHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             HHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence            47899999999999999987542         2489999999999999999764443  35678888764

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.46  E-value=0.00014  Score=61.90  Aligned_cols=58  Identities=22%  Similarity=0.244  Sum_probs=46.6

Q ss_pred             CCHHH----HHHHHhhc-CcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCc
Q psy3926          39 YTRES----LTKIFSKY-GKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDV  101 (512)
Q Consensus        39 Y~~~~----l~~~f~ky-G~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~  101 (512)
                      -+++.    |+++|++| |.|.+|+-     |.|+|+|.+.++|..|++.--|  +...|++|++-.+..
T Consensus        21 ~~~~~lk~~L~~lF~~yGG~Vl~Vtg-----G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~s   85 (96)
T 2diu_A           21 KDGKSVSNRLRRLSDNCGGKVLSITG-----CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNR   85 (96)
T ss_dssp             SCHHHHHHHHHHHHHTTTCCEEECCT-----TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred             CCHHHHHHHHHHHHHHcCCeeEEEec-----CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCc
Confidence            35555    77999999 59999942     9999999999999999975444  567899999876553

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=97.41  E-value=0.00016  Score=74.56  Aligned_cols=60  Identities=20%  Similarity=0.391  Sum_probs=49.6

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC-----CCC--CcEEeecC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGL-----PNC--PLTLNYLN   98 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~-----~~n--Pl~~~~l~   98 (512)
                      +-|++.|+++|++||+|..|+|-. .||-|+|||.+.++|..|+..=.|.     ...  ||-+..++
T Consensus        31 ~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~   97 (345)
T 3tht_A           31 GVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE   97 (345)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence            589999999999999999998865 5799999999999999999864432     123  77777774

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.34  E-value=0.00025  Score=57.71  Aligned_cols=61  Identities=11%  Similarity=0.130  Sum_probs=49.4

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++| .|..|.|..    +.+|.|+|+|.+.++|..|+. -.|  +-..+|.|.|-.+.
T Consensus        21 ~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~   87 (91)
T 2dgw_A           21 NVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSG   87 (91)
T ss_dssp             SCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSC
T ss_pred             CCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcC
Confidence            47999999999999 999996632    447899999999999999997 333  23468999987765

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.32  E-value=0.00018  Score=60.75  Aligned_cols=61  Identities=18%  Similarity=0.114  Sum_probs=46.3

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~~  100 (512)
                      .-|++.|+++|++||.| .|.|..    +.+|.|+|||.+.++|+.|+.. .|.  -..+|.|.+-.+.
T Consensus        26 ~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~V~~~~~~   92 (102)
T 1wez_A           26 RATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAK-DKANMQHRYVELFLNSTA   92 (102)
T ss_dssp             TCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTT-SSCCSSSSCCEEEEECCC
T ss_pred             CCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeECCcEEEEEECCCC
Confidence            47999999999999955 775532    4578999999999999999953 332  2457888765543

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=97.32  E-value=0.00035  Score=56.00  Aligned_cols=56  Identities=23%  Similarity=0.335  Sum_probs=44.5

Q ss_pred             CCCHHHHHHHHhhc----C-------cccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEe
Q psy3926          38 VYTRESLTKIFSKY----G-------KINILVISPKKRGSALLEFEHADSARRAKLYELGL--PNCPLTLN   95 (512)
Q Consensus        38 ~Y~~~~l~~~f~ky----G-------~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~   95 (512)
                      ..+++.|+++|++|    |       .|.++.|... +|.|+|||.+.++|..|+ .-.|.  -..+|+|+
T Consensus        17 ~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~   85 (87)
T 2hzc_A           17 GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIR   85 (87)
T ss_dssp             TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-SSEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred             CCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEe
Confidence            58999999999999    8       8999877644 799999999999999998 43332  23445554

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=97.31  E-value=0.00018  Score=60.80  Aligned_cols=61  Identities=23%  Similarity=0.227  Sum_probs=48.2

Q ss_pred             CCCHHHHHHHHhhcCc---ccEEEecc----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCC
Q psy3926          38 VYTRESLTKIFSKYGK---INILVISP----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNP   99 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~---v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~   99 (512)
                      .-|++.|+++|+.||.   |..|.|..    +.+|.|+|+|.+.++|..|+.. .|  +-..+|.|.|-.+
T Consensus        22 ~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~V~~a~~   91 (107)
T 2lmi_A           22 SCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEK-HRMYMGQRYVEVYEINN   91 (107)
T ss_dssp             SCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTT-TTCCSSSSCCCCEECCH
T ss_pred             CCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CcceeCCeEEEEEECCH
Confidence            4789999999999998   88887643    4578999999999999999963 22  2235788887654

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.21  E-value=0.00054  Score=60.61  Aligned_cols=64  Identities=27%  Similarity=0.339  Sum_probs=52.5

Q ss_pred             CCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcC-HHHHHHHHHh----hcCCCCCceEEEecCCCccc
Q psy3926         427 YTRESLTKIFSKYGKINILVISPKKRGSALLEFEH-ADSARRAKLY----ELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       427 ~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s-~~~A~~Ai~~----~~~~~~~pL~V~wa~~~~~r  491 (512)
                      .++++|+++|+.||.|..|.+..+.. +|||.|.+ ..+|..|+..    +..+.+..+++.-+.++.+.
T Consensus        31 ~sredLke~F~~~G~V~~Vd~~~g~~-tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~GeeE~   99 (121)
T 1owx_A           31 TCREDLHILFSNHGEIKWIDFVRGAK-EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEGEVEK   99 (121)
T ss_dssp             CCHHHHHHHTCSSCCEEEEECCTTCS-EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCHHHHH
T ss_pred             CCHHHHHHHHHhcCCEEEEEEecCCC-EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCCHHHH
Confidence            89999999999999999999987644 89999999 8899988874    34455677888877766544

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=97.20  E-value=0.00019  Score=64.27  Aligned_cols=61  Identities=11%  Similarity=0.081  Sum_probs=47.4

Q ss_pred             CCCHHHHHHHHhhcCc---ccEEEecc----CCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeecC
Q psy3926          38 VYTRESLTKIFSKYGK---INILVISP----KKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLN   98 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~---v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l~   98 (512)
                      ..|++.|+++|++||.   |.+|.|..    +.+|.|+|||.+.++|+.|+.. -.-+-..+|.|.|-.
T Consensus        55 ~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~  123 (136)
T 2hgl_A           55 SCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSH  123 (136)
T ss_dssp             TCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECC
T ss_pred             CCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECC
Confidence            4799999999999999   78876643    4578999999999999999962 112234578887754

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.19  E-value=0.00026  Score=60.16  Aligned_cols=78  Identities=14%  Similarity=0.248  Sum_probs=58.2

Q ss_pred             CCCCcceeEEEeecCCCCC-CCCCH---HHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH-hhcCCCCCce
Q psy3926         406 LNPENYRLRIRWKSSSTDT-DVYTR---ESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL-YELGLPNCPL  480 (512)
Q Consensus       406 ~~~~~~~lkVKWk~~~~~~-~~~te---~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL  480 (512)
                      ..+.+-||.|.-.....+. .-+++   ..|.+.|+.||.|..|.|..++   +||+|.+.++|.+||. ++....+..|
T Consensus        11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~ldG~~v~Gr~L   87 (95)
T 1ufw_A           11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLDVDGMKVKGRAV   87 (95)
T ss_dssp             CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHHGGGSEETTEEE
T ss_pred             cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHhcCCeeeCCeEE
Confidence            3556778888765321011 12443   4577889999999999998774   9999999999999997 4677788899


Q ss_pred             EEEecC
Q psy3926         481 TLNYLN  486 (512)
Q Consensus       481 ~V~wa~  486 (512)
                      +|++..
T Consensus        88 ~V~~k~   93 (95)
T 1ufw_A           88 KISGPS   93 (95)
T ss_dssp             EEECCC
T ss_pred             EEeccC
Confidence            998764

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.17  E-value=0.0002  Score=63.08  Aligned_cols=46  Identities=20%  Similarity=0.237  Sum_probs=38.4

Q ss_pred             CCCHHHHHHHHhhcCcc----cEEEec----cCCCceEEEEeccHHHHHHHHHh
Q psy3926          38 VYTRESLTKIFSKYGKI----NILVIS----PKKRGSALLEFEHADSARRAKLY   83 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v----~~~v~~----~k~~g~A~vef~~~~aa~~a~~~   83 (512)
                      .-|++.|+++|++||.|    .+|.|.    .+.+|.|+|||.+.++|..|+..
T Consensus        34 ~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~   87 (123)
T 2dha_A           34 TATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK   87 (123)
T ss_dssp             TCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh
Confidence            47999999999999986    566553    24579999999999999999964

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.16  E-value=0.00021  Score=61.78  Aligned_cols=60  Identities=13%  Similarity=0.107  Sum_probs=47.4

Q ss_pred             CCCHHHHHHHHhhcCc---ccEEEecc----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecC
Q psy3926          38 VYTRESLTKIFSKYGK---INILVISP----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLN   98 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~---v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~   98 (512)
                      .-|++.|+++|++||.   |..|.|..    +.+|.|+|||.+.++|+.|+.. .|  +-..+|.|.|-.
T Consensus        28 ~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~-~g~~~~gr~i~V~~a~   96 (118)
T 2db1_A           28 SCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKK-DRESMGHRYIEVFKSH   96 (118)
T ss_dssp             TCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGG-TTEEETTEEEEEEEEC
T ss_pred             CCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhc-CCCeECCeEEEEEECC
Confidence            4799999999999999   88886642    4478999999999999999963 22  224578888765

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=97.13  E-value=0.00027  Score=63.57  Aligned_cols=61  Identities=18%  Similarity=0.102  Sum_probs=46.3

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~  100 (512)
                      ..|++.|+++|++|| |++|.|..    +.+|.|+|||.+.++|+.|+.. .|  +-..+|.|.+-.+.
T Consensus        57 ~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~-~g~~l~gR~i~V~~a~~~  123 (139)
T 2hgn_A           57 KATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK-DRANMQHRYIELFLNSTT  123 (139)
T ss_dssp             TCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTC-CSCSSSSCCCCCEECCCS
T ss_pred             CCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhh-CCCEECCEEEEEEECCCC
Confidence            479999999999999 77887643    4579999999999999999932 22  22346777665543

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.97  E-value=0.00088  Score=57.59  Aligned_cols=59  Identities=8%  Similarity=0.142  Sum_probs=45.4

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLN   98 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~   98 (512)
                      .-+++.|+++|+.| .|.+|.|..    +.+|.|+|+|.+.++|+.|+.. .|  +-..+|.|.+-.
T Consensus        27 ~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~V~~a~   91 (109)
T 2dnn_A           27 SAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKR-NRMLMIQRYVEVSPAT   91 (109)
T ss_dssp             SCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHT-TTEEETTEEEEEEECC
T ss_pred             CCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhc-CCCeECCeEEEEEECC
Confidence            47999999999999 899997743    4589999999999999999953 11  123466776554

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=96.68  E-value=0.00093  Score=60.14  Aligned_cols=59  Identities=19%  Similarity=0.154  Sum_probs=43.1

Q ss_pred             CCCCHHHHHHHHhhcCcccEEEe-----ccCCCceEEEEecc-----HHH---HHHHHH----hhhCCCCCCcEEe
Q psy3926          37 DVYTRESLTKIFSKYGKINILVI-----SPKKRGSALLEFEH-----ADS---ARRAKL----YELGLPNCPLTLN   95 (512)
Q Consensus        37 ~~Y~~~~l~~~f~kyG~v~~~v~-----~~k~~g~A~vef~~-----~~a---a~~a~~----~e~g~~~nPl~~~   95 (512)
                      -.-+++.|+.+|+.||+|..+.+     ....+|-++|||.+     .+|   |..|+.    +.+-+...+|.|.
T Consensus        16 ~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~   91 (136)
T 2j8a_A           16 TNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVI   91 (136)
T ss_dssp             CCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEE
T ss_pred             CCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEE
Confidence            35799999999999999999965     23668999999995     333   777775    2233345566665

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=96.67  E-value=0.0015  Score=57.88  Aligned_cols=45  Identities=24%  Similarity=0.323  Sum_probs=38.1

Q ss_pred             CCCHHHHHHHHhhcCccc--EEEecc----CCCceEEEEeccHHHHHHHHHh
Q psy3926          38 VYTRESLTKIFSKYGKIN--ILVISP----KKRGSALLEFEHADSARRAKLY   83 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~--~~v~~~----k~~g~A~vef~~~~aa~~a~~~   83 (512)
                      .-|++.|+++|++| .|+  +|.|..    +.+|.|+|||.+.++|+.|+..
T Consensus        53 ~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~  103 (126)
T 2hgm_A           53 GCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK  103 (126)
T ss_dssp             TCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT
T ss_pred             CCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH
Confidence            47999999999999 566  776643    4579999999999999999963

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=96.38  E-value=0.0034  Score=59.40  Aligned_cols=61  Identities=18%  Similarity=0.136  Sum_probs=49.7

Q ss_pred             CCCCHHHHHHHHhhcCcccEEEec----c-----CCCceEEEEeccHHHHHHHHHhhhCCC--CCCcEEeec
Q psy3926          37 DVYTRESLTKIFSKYGKINILVIS----P-----KKRGSALLEFEHADSARRAKLYELGLP--NCPLTLNYL   97 (512)
Q Consensus        37 ~~Y~~~~l~~~f~kyG~v~~~v~~----~-----k~~g~A~vef~~~~aa~~a~~~e~g~~--~nPl~~~~l   97 (512)
                      ....++.|++.|++||+|..|.|.    .     ..+|.+.|||.+.++|..|+..-.|..  ..||.+++.
T Consensus       139 ~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~  210 (222)
T 3dxb_A          139 DDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY  210 (222)
T ss_dssp             CTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred             HHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence            357789999999999999999885    2     557999999999999999999877762  345655554

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.32  E-value=0.0048  Score=54.52  Aligned_cols=62  Identities=23%  Similarity=0.228  Sum_probs=44.7

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEecc-HHHHHHHHHhh--hC--CCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEH-ADSARRAKLYE--LG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~-~~aa~~a~~~e--~g--~~~nPl~~~~l~~~  100 (512)
                      +-|.+.|+.+|++||+|..|.+.... -.|.|+|.+ ..+|..|+..-  -|  +-...++++-|+++
T Consensus        30 ~~sredLke~F~~~G~V~~Vd~~~g~-~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~Ge   96 (121)
T 1owx_A           30 QTCREDLHILFSNHGEIKWIDFVRGA-KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEGE   96 (121)
T ss_dssp             SCCHHHHHHHTCSSCCEEEEECCTTC-SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCHH
T ss_pred             cCCHHHHHHHHHhcCCEEEEEEecCC-CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCCH
Confidence            37899999999999999999876543 379999999 77787777641  11  11234666656543

>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}

Probab=94.27  E-value=0.031  Score=59.79  Aligned_cols=55  Identities=18%  Similarity=0.177  Sum_probs=41.7

Q ss_pred             cceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH
Q psy3926         410 NYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL  470 (512)
Q Consensus       410 ~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~  470 (512)
                      .++|.|.-  ..    ..++..|.++|++||+|.++.+-+++.-+|+|+|.+.+++.+++.
T Consensus        53 ~rsv~v~~--~~----~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~  107 (464)
T 3pq1_A           53 QRTVLIHC--PE----KISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN  107 (464)
T ss_dssp             HTEEEEEE--CC----C---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred             cceEEEEc--CC----CCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence            34888873  22    389999999999999999999999888999999999999987763

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.19  E-value=0.047  Score=46.26  Aligned_cols=55  Identities=16%  Similarity=0.243  Sum_probs=40.0

Q ss_pred             HHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeecCC
Q psy3926          42 ESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNP   99 (512)
Q Consensus        42 ~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l~~   99 (512)
                      ..|.+.|+.||+|..+-|-.-   .+.|+|.+.++|..|+.. -.-.....|+|.+.+|
T Consensus        39 ~~L~~~F~~~G~Vilvr~v~d---~~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~~k~~   94 (95)
T 1ufw_A           39 TELMQTLGSYGTIVLVRINQG---QMLVTFADSHSALSVLDVDGMKVKGRAVKISGPSS   94 (95)
T ss_dssp             HHHHHHHHHHSCCSEEEEETT---EEEEECSCSHHHHHHHHGGGSEETTEEEEEECCCC
T ss_pred             HHHHHHHHHCCCEEEEEEecC---cEEEEEcChHHHHHHHhcCCeeeCCeEEEEeccCC
Confidence            458899999999998855443   399999999999999972 1112234677776553

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.93  E-value=0.053  Score=45.61  Aligned_cols=54  Identities=19%  Similarity=0.290  Sum_probs=39.8

Q ss_pred             HHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCC
Q psy3926          42 ESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLNP   99 (512)
Q Consensus        42 ~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~   99 (512)
                      ..|...|+.||+|..+-|-.   +.+.|+|.+.++|..|+. =-|.  ....|+|..-.|
T Consensus        30 ~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~   85 (91)
T 2dnr_A           30 DELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSP   85 (91)
T ss_dssp             HHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred             HHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence            56889999999999886544   349999999999999986 2222  223577765554

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=93.86  E-value=0.084  Score=46.06  Aligned_cols=58  Identities=9%  Similarity=0.130  Sum_probs=49.1

Q ss_pred             CCCCHHHHHHHhhcc-----CCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEE
Q psy3926         425 DVYTRESLTKIFSKY-----GKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLN  483 (512)
Q Consensus       425 ~~~te~~L~~iFs~f-----G~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~  483 (512)
                      +.+++..++.+...|     |.|..|++..+ .|-|+|+|++...|-+|.-  ++..+.+..|.|.
T Consensus        31 DtvndarIr~lve~~~~i~~g~i~KI~L~pD-H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g   95 (117)
T 2l9w_A           31 DKVSPSLICQFLQEEIHINEKDIRKILLVSD-FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG   95 (117)
T ss_dssp             TTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred             CCCCHHHHHHHHhhhhccCccceeEEEEecC-CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence            469999999999999     99999998776 7889999999999988864  4566667777764

>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}

Probab=92.45  E-value=0.05  Score=58.13  Aligned_cols=49  Identities=18%  Similarity=0.160  Sum_probs=36.0

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGL   87 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~   87 (512)
                      .-++..|.++|++||+|.++++-+.+.--|||||++.+++..+. .+.+.
T Consensus        63 ~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~-~~~~~  111 (464)
T 3pq1_A           63 KISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQ-NGTHT  111 (464)
T ss_dssp             C---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHH-SSCCC
T ss_pred             CCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHH-hccCC
Confidence            37899999999999999999998776678999999999988544 55443

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.43  E-value=0.94  Score=38.87  Aligned_cols=60  Identities=22%  Similarity=0.206  Sum_probs=49.9

Q ss_pred             CCCCHHHHHHHhhc-c----CCeeEEEEccCCCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCC
Q psy3926         425 DVYTRESLTKIFSK-Y----GKINILVISPKKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNP  487 (512)
Q Consensus       425 ~~~te~~L~~iFs~-f----G~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~  487 (512)
                      ...+++.|.-+|.+ -    |.|++|....   +.|+|+|.+.+.|++.++. ...+.+.+|.|.-.-+
T Consensus        18 p~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~   83 (104)
T 2dhx_A           18 PAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPP   83 (104)
T ss_dssp             TTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCC
T ss_pred             CCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCC
Confidence            36789999999977 2    6999998765   8999999999999999987 7778889999965433

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=91.21  E-value=0.31  Score=42.50  Aligned_cols=43  Identities=9%  Similarity=0.169  Sum_probs=37.8

Q ss_pred             CCCHHHHHHHHhhc-----CcccEEEeccCCCceEEEEeccHHHHHHHH
Q psy3926          38 VYTRESLTKIFSKY-----GKINILVISPKKRGSALLEFEHADSARRAK   81 (512)
Q Consensus        38 ~Y~~~~l~~~f~ky-----G~v~~~v~~~k~~g~A~vef~~~~aa~~a~   81 (512)
                      --|.+.++.+...|     |++..|++-+. -|.|||||++..+|--|.
T Consensus        32 tvndarIr~lve~~~~i~~g~i~KI~L~pD-H~GAivef~d~~~AgKas   79 (117)
T 2l9w_A           32 KVSPSLICQFLQEEIHINEKDIRKILLVSD-FNGAIIIFRDSKFAAKML   79 (117)
T ss_dssp             TCCHHHHHHHHHHHTCCCTTTCSEEEEETT-TTEEEEECSCHHHHHHHH
T ss_pred             CCCHHHHHHHHhhhhccCccceeEEEEecC-CCceEEEEccchhhHHHH
Confidence            48999999999999     99999998776 478999999998877665

>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1

Probab=86.23  E-value=1.4  Score=38.70  Aligned_cols=58  Identities=14%  Similarity=0.122  Sum_probs=43.9

Q ss_pred             CHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHhhcCCCC--CceEEEecC
Q psy3926         428 TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPN--CPLTLNYLN  486 (512)
Q Consensus       428 te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~~~~~~~--~pL~V~wa~  486 (512)
                      .-+.+-..|++||.|.+... ....+.-.|.|.+..+|.+|+..+-...+  ..+-|.+..
T Consensus        36 ~~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~   95 (119)
T 1wwh_A           36 SASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI   95 (119)
T ss_dssp             GHHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred             HHHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence            35677788999999998887 34568999999999999999975433333  456677654

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.62  E-value=4.9  Score=34.41  Aligned_cols=58  Identities=21%  Similarity=0.174  Sum_probs=48.5

Q ss_pred             CCCHHHHHHHHhh-c----CcccEEEeccCCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeecC
Q psy3926          38 VYTRESLTKIFSK-Y----GKINILVISPKKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLN   98 (512)
Q Consensus        38 ~Y~~~~l~~~f~k-y----G~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l~   98 (512)
                      +-++|.|.=+|++ -    |.|.+|..-.   ++|||+|.+.++|+..++. +-=+-..||+|...-
T Consensus        19 ~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~   82 (104)
T 2dhx_A           19 AVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQADHELHGAQLSLRPAP   82 (104)
T ss_dssp             TSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECC
T ss_pred             CCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCC
Confidence            5789999999999 2    7888887644   8999999999999999988 777777889987643

>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*

Probab=81.84  E-value=2.2  Score=36.28  Aligned_cols=43  Identities=23%  Similarity=0.372  Sum_probs=34.1

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY  471 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~  471 (512)
                      .+--.+|..+|+.||.|.==.|-   --+|+|+|.+.+.|..|+..
T Consensus        26 ewKt~DI~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~   68 (100)
T 1whv_A           26 EWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVQIAVNT   68 (100)
T ss_dssp             TCCHHHHHHHHTTTCSCCCEEEE---TTEEEEECSCHHHHHHHHHH
T ss_pred             hhhhHHHHHHhhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHh
Confidence            47889999999999966322232   35999999999999999864

>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}

Probab=81.26  E-value=0.79  Score=39.11  Aligned_cols=42  Identities=21%  Similarity=0.316  Sum_probs=34.7

Q ss_pred             CCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh
Q psy3926          39 YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY   83 (512)
Q Consensus        39 Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~   83 (512)
                      .-..+|.++|+.||   .|.|+=-.-.+|+|.|.+.+.|..|+..
T Consensus        17 wKt~Di~~lFs~fg---gv~I~WidDTsAlvvf~~~~~a~~al~~   58 (101)
T 3ctr_A           17 WKTSDLYQLFSAFG---NIQISWIDDTSAFVSLSQPEQVKIAVNT   58 (101)
T ss_dssp             CCHHHHHHHTTTSE---EEEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred             hhhHHHHHHHhccC---CEEEEEEcCCeEEEEecCHHHHHHHHHh
Confidence            45578999999999   5666655567999999999999998853

>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*

Probab=80.76  E-value=0.83  Score=38.89  Aligned_cols=55  Identities=18%  Similarity=0.236  Sum_probs=38.7

Q ss_pred             CCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCCCCCCcEEeecC
Q psy3926          39 YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLN   98 (512)
Q Consensus        39 Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~~~nPl~~~~l~   98 (512)
                      .-..+|.++|+.||.|.   |+=-.-.+|+|.|.+.+.|..|+..=.  -+...+|.=+.
T Consensus        27 wKt~DI~~lFs~fggv~---I~WidDTsAlvvf~~~~~a~~al~~i~--k~~~y~i~ty~   81 (100)
T 1whv_A           27 WKTSDLYQLFSAFGNIQ---ISWIDDTSAFVSLSQPEQVQIAVNTSK--YAESYRIQTYA   81 (100)
T ss_dssp             CCHHHHHHHHTTTCSCC---CEEEETTEEEEECSCHHHHHHHHHHHH--HCCSSEEEEHH
T ss_pred             hhhHHHHHHhhccCCEE---EEEEcCCeEEEEecCHHHHHHHHHhcc--cCCceEEEEhH
Confidence            56689999999999554   443345699999999999998885311  12236665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	512
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	8e-13
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	1e-10
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	2e-10
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	3e-10
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	4e-10
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	5e-09
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	8e-09
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	9e-06

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 61.6 bits (149), Expect = 8e-13
 Identities = 28/63 (44%), Positives = 40/63 (63%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y +L ++    E++IR AY++ A+K HPD+N  DK+A   F  + +A EVL D   RA
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63

Query: 313 AYD 315
           AYD
Sbjct: 64  AYD 66

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (132), Expect = 1e-10
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
           D Y  L L    S+++I+ AYR++AL+ HPDKN +   A E F  +++A +VL D   R 
Sbjct: 4   DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP-GAEEKFKEIAEAYDVLSDPRKRE 62

Query: 313 AYD 315
            +D
Sbjct: 63  IFD 65

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (133), Expect = 2e-10
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 243 SSIMADIKDL--DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIE------T 294
           SS MA  + L  D Y +L      +  D++  Y+K  L  HPDK   D  A         
Sbjct: 5   SSGMALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQK 64

Query: 295 FHLLSKAIEVLLDKSARAAYD 315
           F  + +A ++L ++  +  YD
Sbjct: 65  FIEIDQAWKILGNEETKKKYD 85

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.9 bits (132), Expect = 3e-10
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD---KKAIETFHLLSKAIEVLLDKS 309
             +  + +    + + ++  YRK  L  HPDK       + A   F  L+ A     ++ 
Sbjct: 34  TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 93

Query: 310 ARAAY 314
            +  Y
Sbjct: 94  QKPLY 98

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 53.9 bits (129), Expect = 4e-10
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 7/71 (9%)

Query: 252 LDLYGLLELTIDCS--EQDIRSAYRKKALKCHPDKNP-----DDKKAIETFHLLSKAIEV 304
           +D + L  L        Q +   ++    + HPDK       +   A++    +++A + 
Sbjct: 1   MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60

Query: 305 LLDKSARAAYD 315
           L     RA Y 
Sbjct: 61  LRHPLMRAEYL 71

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 50.8 bits (121), Expect = 5e-09
 Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 6/77 (7%)

Query: 242 LSSIMADIKDLDLYGLLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLS 299
           +  +++      L  LL+L          ++ AY++++L  HPDK             L+
Sbjct: 1   MDRVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHAL----MQELN 56

Query: 300 KAIEVLLDKSARAAYDS 316
                   +      + 
Sbjct: 57  SLWGTFKTEVYNLRMNL 73

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (120), Expect = 8e-09
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAI-ETFHLLSKAIEVLLDKSAR 311
           ++  ++E      E + +   R+  LK HPDKNP++     E F  L   I  L  ++  
Sbjct: 17  EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76

Query: 312 AAYDSVIRRK 321
                   R+
Sbjct: 77  DQNADRASRR 86

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 42.5 bits (99), Expect = 9e-06
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 10/104 (9%)

Query: 250 KDLDLYGLLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLD 307
           + L L  LL L      +   +R AY KK  + HPDK  D++K       ++   + + D
Sbjct: 6   ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEK----MKKMNTLYKKMED 61

Query: 308 KSARAAYDSVIRRKEEVKIRNSKLDATRKKFK----EDLERREK 347
               A         +  +I     D   + +     E+L   E+
Sbjct: 62  GVKYAHQPDFGGFWDATEIPTYGTDEWEQWWNAFNEENLFCSEE 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	512
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.82
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.73
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.65
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.6
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.53
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.51
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.48
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	99.18
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	99.11
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	99.06
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.04
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.01
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	98.99
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	98.97
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	98.97
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	98.96
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	98.95
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	98.95
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	98.95
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	98.95
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	98.94
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.94
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	98.94
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	98.93
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	98.93
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.92
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	98.91
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	98.9
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	98.9
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	98.9
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	98.9
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	98.89
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.89
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	98.89
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	98.89
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	98.88
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	98.88
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.88
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	98.87
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	98.87
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	98.86
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	98.86
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	98.85
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.85
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	98.84
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	98.84
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	98.84
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	98.82
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.81
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	98.8
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	98.8
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	98.8
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	98.79
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	98.78
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	98.77
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	98.76
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	98.74
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	98.74
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	98.74
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	98.73
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	98.73
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	98.73
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	98.72
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	98.72
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	98.71
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	98.71
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	98.71
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	98.67
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	98.66
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	98.65
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	98.65
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	98.64
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	98.63
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	98.63
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	98.63
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	98.63
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	98.63
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	98.62
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	98.61
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	98.6
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.6
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	98.59
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	98.54
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	98.53
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.49
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	98.49
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	98.49
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	98.47
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	98.44
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	98.44
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	98.44
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	98.42
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	98.42
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	98.42
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	98.41
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	98.4
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	98.4
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	98.39
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	98.38
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.38
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.37
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	98.34
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	98.34
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	98.32
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	98.31
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	98.29
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	98.29
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	98.29
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	98.27
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	98.26
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	98.25
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	98.25
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	98.25
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	98.24
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	98.22
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	98.22
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.21
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	98.21
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.21
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	98.2
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	98.2
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	98.2
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	98.18
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	98.18
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	98.17
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	98.16
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	98.16
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	98.16
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.15
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	98.15
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	98.13
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	98.12
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	98.12
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	98.11
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	98.11
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	98.1
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	98.09
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	98.09
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	98.09
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	98.09
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	98.08
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	98.08
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	98.05
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	98.01
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	98.0
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	98.0
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	97.99
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	97.97
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	97.95
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	97.94
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	97.92
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	97.9
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	97.88
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	97.88
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	97.88
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	97.85
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	97.83
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	97.82
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	97.81
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	97.8
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	97.8
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	97.79
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	97.79
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	97.78
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	97.76
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	97.75
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	97.72
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	97.71
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	97.69
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	97.62
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	97.57
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	97.55
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	97.55
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	97.46
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	97.34
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	97.32
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	97.13
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	97.09
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	97.08
d1ufwa_	95	Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]	90.19
d2dgxa1	73	Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960	89.66
d2dgxa1	73	Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960	86.67

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=7e-21  Score=153.86  Aligned_cols=69  Identities=41%  Similarity=0.639  Sum_probs=65.8

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIR  319 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~  319 (512)
                      ..|||+||||+++||.++||+|||+|+++||||++++++.+.+.|..|++||+||+||.+|..||.+|.
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~   70 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH   70 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTT
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCc
Confidence            359999999999999999999999999999999998888889999999999999999999999999875

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.8e-19  Score=144.16  Aligned_cols=69  Identities=36%  Similarity=0.574  Sum_probs=64.3

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHHHH
Q psy3926         251 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRR  320 (512)
Q Consensus       251 ~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~  320 (512)
                      ..|||+||||+++||.++|++||+++++++|||+++ ++++.+.|..|++||+||+||.+|+.||+++..
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~-~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~   70 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEE   70 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCC-CTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGG
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhcccccc-chhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhh
Confidence            469999999999999999999999999999999997 467889999999999999999999999987653

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=1.2e-18  Score=146.47  Aligned_cols=69  Identities=25%  Similarity=0.435  Sum_probs=63.1

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC------hHHHHHHHHHHHHHHHccChhhhhHHHHHH
Q psy3926         250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD------KKAIETFHLLSKAIEVLLDKSARAAYDSVI  318 (512)
Q Consensus       250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~------~~a~~~F~~I~~AYevLsDp~~R~~YD~~~  318 (512)
                      ...|||+||||+++|+.++||+||++|+++||||+++.+      +.+.+.|+.|++||+||+||.+|+.||..+
T Consensus        14 ~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~   88 (94)
T d1wjza_          14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR   88 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred             hccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcc
Confidence            356999999999999999999999999999999998764      357789999999999999999999999864

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.65  E-value=4e-18  Score=147.79  Aligned_cols=64  Identities=28%  Similarity=0.325  Sum_probs=58.6

Q ss_pred             CCCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHHHH
Q psy3926         251 DLDLYGLLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVI  318 (512)
Q Consensus       251 ~~d~YeiLgv~~~A--s~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~  318 (512)
                      ..|||+||||+++|  +..+||+|||+||++|||||+++.    +.|++|++||+||+||.+|+.||..+
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~----e~F~~I~~AY~vLsd~~kR~~YD~~~   72 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKMEDGVKYAHQPDFG   72 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT----TTTHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhH----HHHHHHHHHHHHhCCHHHHHHHhccC
Confidence            35899999999999  788999999999999999999753    68999999999999999999999764

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=1.7e-16  Score=127.87  Aligned_cols=67  Identities=21%  Similarity=0.313  Sum_probs=59.1

Q ss_pred             CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCh-----HHHHHHHHHHHHHHHccChhhhhHHHHHH
Q psy3926         252 LDLYGLLELTID--CSEQDIRSAYRKKALKCHPDKNPDDK-----KAIETFHLLSKAIEVLLDKSARAAYDSVI  318 (512)
Q Consensus       252 ~d~YeiLgv~~~--As~~eIKkAYRkLa~k~HPDk~~~~~-----~a~~~F~~I~~AYevLsDp~~R~~YD~~~  318 (512)
                      +|||+||||+++  ++.++|++|||+++++||||+..+.+     .+...|..|++||++|+||.+|+.|+..+
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l   74 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence            489999999986  45899999999999999999976543     36688999999999999999999998765

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.53  E-value=9.5e-16  Score=124.76  Aligned_cols=62  Identities=19%  Similarity=0.246  Sum_probs=56.7

Q ss_pred             CCCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHccChhhhhHHHH
Q psy3926         251 DLDLYGLLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDS  316 (512)
Q Consensus       251 ~~d~YeiLgv~~~A--s~~eIKkAYRkLa~k~HPDk~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~  316 (512)
                      ..++|+||||++++  +.++||+|||+++++||||++++ +   +.|++|++||++|+|+.+|..||.
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~-~---e~~~~in~Ay~~L~d~~~r~~~~~   73 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS-H---ALMQELNSLWGTFKTEVYNLRMNL   73 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC-H---HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC-H---HHHHHHHHHHHHHCCHHHHHHHcc
Confidence            35899999999998  99999999999999999999853 3   689999999999999999999875

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.51  E-value=1.4e-15  Score=128.49  Aligned_cols=65  Identities=20%  Similarity=0.292  Sum_probs=59.0

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---HHHHHHHHHHHHHHHccChhhhhHH
Q psy3926         250 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDK---KAIETFHLLSKAIEVLLDKSARAAY  314 (512)
Q Consensus       250 ~~~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~---~a~~~F~~I~~AYevLsDp~~R~~Y  314 (512)
                      .+.++|++|||...+|.++||+|||++++.||||+++++.   .|...|..|++||++|+||.+|+.|
T Consensus        31 ~~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          31 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TTCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             CcccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            4558899999999999999999999999999999987653   3778999999999999999999877

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.9e-15  Score=124.26  Aligned_cols=59  Identities=29%  Similarity=0.422  Sum_probs=53.8

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHHHHHHHccChhh
Q psy3926         252 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDK-KAIETFHLLSKAIEVLLDKSA  310 (512)
Q Consensus       252 ~d~YeiLgv~~~As~~eIKkAYRkLa~k~HPDk~~~~~-~a~~~F~~I~~AYevLsDp~~  310 (512)
                      .++|+||||+.+||.+|||+|||+|+++||||++++++ .|.+.|+.|++||++|+++..
T Consensus        16 ~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~~~~   75 (88)
T d1iura_          16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAF   75 (88)
T ss_dssp             HHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999998875 488999999999999975443

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3e-11  Score=101.54  Aligned_cols=64  Identities=22%  Similarity=0.296  Sum_probs=58.4

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~  488 (512)
                      ..+|+++|+++|+.||.|.+|.|..+++|+|||+|.+.++|.+|++.  +..+.+.+|.|.|+..+
T Consensus        13 ~~~te~~L~~~F~~fG~I~~v~i~~~~kg~afV~f~~~~~A~~ai~~lng~~l~g~~l~v~~s~~~   78 (109)
T d2adca1          13 ERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ   78 (109)
T ss_dssp             TTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred             ccCCHHHHHHHHhhccccceEEEEecccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence            35899999999999999999999999999999999999999999974  67778899999999754

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=6.5e-11  Score=94.61  Aligned_cols=72  Identities=24%  Similarity=0.280  Sum_probs=62.0

Q ss_pred             cceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCC
Q psy3926         410 NYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNP  487 (512)
Q Consensus       410 ~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~  487 (512)
                      .++|-|..   .    ++|+++|+++|++||.|.+|.+.+ .+|+|||+|.+.++|..|+.  ++..+.+.+|+|.|+++
T Consensus         5 ~~ti~V~~---~----~~te~~L~~~F~~~G~I~~v~~~~-~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~   76 (79)
T d2bz2a1           5 GNTLYVYG---E----DMTPTLLRGAFSPFGNIIDLSMDP-PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK   76 (79)
T ss_dssp             CCEEEEEC---S----SCCHHHHHHHHSTTCCCSCEEEET-TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred             CCEEEEEC---C----CCCHHHHHHHHhccCccceeeecc-CCCEEEEEEcccHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence            45676663   1    489999999999999999999875 47999999999999999997  47778899999999988


Q ss_pred             Cc
Q psy3926         488 DV  489 (512)
Q Consensus       488 ~~  489 (512)
                      +|
T Consensus        77 ~P   78 (79)
T d2bz2a1          77 QP   78 (79)
T ss_dssp             SC
T ss_pred             CC
Confidence            76

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.06  E-value=5.2e-10  Score=89.95  Aligned_cols=63  Identities=13%  Similarity=0.280  Sum_probs=55.7

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCC-CCceEEEecCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLP-NCPLTLNYLNP  487 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~-~~pL~V~wa~~  487 (512)
                      ..+|++.|.++|+.||.|.+|.+..+++|+|||+|.+.++|..|+..  +..+. +.+|.|.||+.
T Consensus        18 ~~~t~~~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~i~v~~akk   83 (83)
T d2b0ga1          18 EETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK   83 (83)
T ss_dssp             TTCCHHHHHHHHTTSTTEEEEEECTTTCSCEEEEESSHHHHHHHHHHHTTCBSSTTCBCEEEECCC
T ss_pred             CCCCHHHHHhhhccCccEEEeeeecccceeEEEecCCHHHHHHHHHHhCCcEeCCCcEEEEEEecC
Confidence            46999999999999999999999988899999999999999999974  44453 57999999963

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2e-10  Score=93.86  Aligned_cols=67  Identities=13%  Similarity=0.129  Sum_probs=58.9

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC---CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK---KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~---kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r  491 (512)
                      ..+|++.|+++|+.||+|.+|.|..+   .+|+|||+|.+.++|..|+.  ++..+.+.+|+|.||.++..+
T Consensus        18 ~~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~~~   89 (90)
T d2cqia1          18 RDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ   89 (90)
T ss_dssp             TTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTCC
T ss_pred             CCCCHHHHHHHHHhcCCceeeeeecccCccceeeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCCC
Confidence            36999999999999999999998754   47999999999999999997  466778899999999877654

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.4e-10  Score=94.78  Aligned_cols=65  Identities=17%  Similarity=0.293  Sum_probs=58.1

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE  490 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~  490 (512)
                      ..+|+++|+++|+.||.|.+|.|..+ +|+|||+|.+.++|..|+.  ++..+.+.+|+|.|+++.|.
T Consensus        28 ~~~te~~L~~~F~~fG~i~~v~i~~~-kg~afV~f~~~~~A~~Ai~~l~~~~i~g~~l~v~~ak~~p~   94 (96)
T d1x4ga1          28 SGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD   94 (96)
T ss_dssp             SCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred             CCCCHHHHHHHHHHhCCceEEEEEec-ceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCCCC
Confidence            36999999999999999999999876 7999999999999999996  46667889999999987654

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.5e-10  Score=94.34  Aligned_cols=67  Identities=19%  Similarity=0.275  Sum_probs=60.3

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHhhcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~~~~~~~~pL~V~wa~~~~~r  491 (512)
                      ..+|+++|+++|++||.|.+|.+..+.+|+|||+|.+.++|.+|+.++..+.+.+|.|.|+.++...
T Consensus        15 ~~~te~~L~~~F~~~G~v~~v~~~~~~~gfafV~f~~~~~a~~a~~~~~~i~g~~l~v~~a~~k~~~   81 (88)
T d1wf0a_          15 GDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHNS   81 (88)
T ss_dssp             SSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCCCCC
T ss_pred             CCCCHHHHHHHHHHcCCceEEEEeeccCceEEEEECCHHHHHHHHhCCCEECCEEeEEEeCCCCCCC
Confidence            4699999999999999999999988889999999999999999998777778899999999765443

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.97  E-value=4e-10  Score=89.98  Aligned_cols=63  Identities=25%  Similarity=0.339  Sum_probs=55.8

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNP  487 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~  487 (512)
                      ..+|+++|+++|++||.|.+|.|+.++     +|+|||+|.+.++|.+|++  ++..+.+.+|.|.||+|
T Consensus        12 ~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~l~v~~a~p   81 (82)
T d1b7fa1          12 QDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP   81 (82)
T ss_dssp             TTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CCCCHHHHHHHHHHhCCcceeeeeeecccCCccccceEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            469999999999999999999987532     7899999999999999997  46777889999999975

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=4.7e-10  Score=89.46  Aligned_cols=63  Identities=19%  Similarity=0.341  Sum_probs=55.9

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNP  487 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~  487 (512)
                      ..+|+++|+++|++||.|.+|.|..+     .+|+|||+|.+.++|..|++  ++..+.+.+|.|.||+|
T Consensus        12 ~~~te~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~AkP   81 (82)
T d1fxla1          12 QNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP   81 (82)
T ss_dssp             TTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CCCCHHHHHHHHHHhCCcccccceeeccCCCceeeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence            46999999999999999999998753     26899999999999999997  46777889999999975

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=9.4e-10  Score=88.98  Aligned_cols=66  Identities=11%  Similarity=0.249  Sum_probs=58.4

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCCcc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE  490 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~~~  490 (512)
                      ..+|+++|+++|++||+|.+|.|..+     .+|+|||+|.+.++|..|+..  +..+.+.+|.|.||.+...
T Consensus        11 ~~~te~~l~~~F~~~G~v~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l~V~~A~~~~~   83 (85)
T d2u2fa_          11 NYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK   83 (85)
T ss_dssp             SSCCSHHHHHHHTSSSCEEEEEEECCCSSSCCCCEEEEEESSSHHHHHHHHTSSSCCCSSSCCEEEECCCCCC
T ss_pred             CCCCHHHHHHHHHhcCccceEEeeccccccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence            47999999999999999999998764     379999999999999999984  7778889999999976543

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=6.5e-10  Score=91.45  Aligned_cols=64  Identities=20%  Similarity=0.216  Sum_probs=56.4

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~  488 (512)
                      ..+|+++|+++|++||+|.+|.|..++     +|+|||+|.+.++|..|++  ++..+.+.+|.|.|+.+.
T Consensus        17 ~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V~~a~~~   87 (93)
T d1h2vz_          17 FYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGF   87 (93)
T ss_dssp             TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCC
T ss_pred             CCCCHHHHHHHHHHHCCcceeccccccccccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            469999999999999999999987643     6899999999999999997  466678899999999754

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=4.8e-10  Score=91.33  Aligned_cols=67  Identities=21%  Similarity=0.303  Sum_probs=59.5

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC---CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK---RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k---kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r  491 (512)
                      ..+|+++|+++|+.||.|.++.|..++   +|+|||+|.+.++|.+|++  ++..+.+.+|.|.|+.++.+|
T Consensus        18 ~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~V~~a~~~~~R   89 (89)
T d1cvja2          18 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER   89 (89)
T ss_dssp             SSCCHHHHHHHHHTTSCEEEEEECCBTTBCCSCEEEEESCHHHHHHHTTSSSEEEETTEEEEEEECCCTTTC
T ss_pred             CCCCHHHHHHHHHhcCCceEEEEEeecCCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence            469999999999999999999988643   7999999999999999996  467788899999999987765

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=8.9e-10  Score=92.84  Aligned_cols=65  Identities=28%  Similarity=0.413  Sum_probs=54.6

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-CCceEEEEEcCHHHHHHHHHh--hcCC--CCCceEEEecCCCc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-KRGSALLEFEHADSARRAKLY--ELGL--PNCPLTLNYLNPDV  489 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-kkg~A~V~F~s~~~A~~Ai~~--~~~~--~~~pL~V~wa~~~~  489 (512)
                      ..+|+++|+++|+.||.|..|.|..+ .+|+|||+|.+.++|..||..  +..+  .+.+|.|.|+.+..
T Consensus        17 ~~vte~~L~~~F~~~G~i~~~~i~~~~~~g~aFV~f~~~e~A~~Ai~~ln~~~l~~~~~~l~v~~s~~~~   86 (108)
T d2adba1          17 YPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS   86 (108)
T ss_dssp             STTHHHHHHHHHTTTSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHHSCCSSTTCCCCEEEECSSCS
T ss_pred             CCCCHHHHHHHHccCCcEEEEEEEeeCCCCeEEEEECCHHHHHHHHHHHCCCEeccCCcEEEEEecCCcc
Confidence            47999999999999999999988754 589999999999999999974  4443  45789999987643

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=4.3e-10  Score=91.64  Aligned_cols=66  Identities=27%  Similarity=0.303  Sum_probs=57.4

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE  490 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~  490 (512)
                      ..+|+++|+++|+.||+|.+|.|+.+     .+|+|||+|.+.++|..|+.  ++..+.+.+|.|.||.++..
T Consensus        15 ~~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~~l~v~~a~p~~~   87 (89)
T d2cqba1          15 EEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRI   87 (89)
T ss_dssp             SSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred             CcCCHHHHHHHHhhCCeEEecccccccccccccceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence            46899999999999999999998753     37999999999999999996  46777889999999986543

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=9.3e-10  Score=90.37  Aligned_cols=66  Identities=21%  Similarity=0.294  Sum_probs=58.5

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC---CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK---KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE  490 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~---kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~  490 (512)
                      ..+|+++|+++|+.||+|.+|.|..+   .+|+|||+|.+.++|.+||.  ++..+.+.+|.|.||.+++.
T Consensus        21 ~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~kg~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~A~~r~~   91 (93)
T d2cq3a1          21 FRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM   91 (93)
T ss_dssp             TTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCC
T ss_pred             CCCCHHHHHHHHhhcceeeeccccccccCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCcCCC
Confidence            46999999999999999999988764   37899999999999999996  47777889999999988764

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=1.4e-09  Score=89.63  Aligned_cols=66  Identities=20%  Similarity=0.358  Sum_probs=57.4

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC------CCceEEEEEcCHHHHHHHHH---hhcCCCCCceEEEecCCCcc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK------KRGSALLEFEHADSARRAKL---YELGLPNCPLTLNYLNPDVE  490 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~------kkg~A~V~F~s~~~A~~Ai~---~~~~~~~~pL~V~wa~~~~~  490 (512)
                      ..+|+++|+++|+.||.|.+|.|+.+      .+|+|||+|.+.++|.+|+.   ++..+.+.+|.|.||.+...
T Consensus        18 ~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~Gr~l~V~~A~~~~~   92 (94)
T d2cpha1          18 FQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVT   92 (94)
T ss_dssp             TTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCC
T ss_pred             CCCCHHHHHHHHHHhCCceEEEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCCcEECCEEEEEEEcCCCCC
Confidence            46999999999999999999998653      37999999999999999996   35668889999999987643

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=5e-10  Score=91.40  Aligned_cols=64  Identities=22%  Similarity=0.455  Sum_probs=56.7

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~  488 (512)
                      ..+|++.|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+||+  ++..+.+.+|.|+||+|+
T Consensus        18 ~~~t~~~l~~~f~~~G~v~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~akp~   88 (90)
T d2cq0a1          18 EDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPS   88 (90)
T ss_dssp             TTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred             CCCCHHHHHHHHHHhcccccccccccccccccccceeEEECCHHHHHHHHHHhCCCEECCEEEEEEeeeCC
Confidence            479999999999999999999988643     7899999999999999997  356677899999999865

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.4e-09  Score=89.47  Aligned_cols=65  Identities=17%  Similarity=0.203  Sum_probs=57.8

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~  489 (512)
                      ..+|+++|+++|++||.|.+|.|..+     .+|+|||+|.+.++|.+|++  ++..+.+.+|+|.||.++.
T Consensus        19 ~~~t~~~l~~~F~~~G~v~~v~~~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~A~~~~   90 (93)
T d1x5ua1          19 EKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHN   90 (93)
T ss_dssp             TTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTS
T ss_pred             CcCCHHHHHHHHHHhCCccccceeecccccccccceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence            47999999999999999999998764     37999999999999999997  4677888999999998764

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=8.2e-10  Score=90.60  Aligned_cols=66  Identities=12%  Similarity=0.164  Sum_probs=57.8

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHhhcCCCCCceEEEecCCCcc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPDVE  490 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~~~~~~~~pL~V~wa~~~~~  490 (512)
                      -.+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|.+|+.....+.+.+|.|+|+.++..
T Consensus        18 ~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~srG~aFV~f~~~~~a~~al~~~~~l~Gr~i~v~~a~~k~~   88 (90)
T d2cqga1          18 WKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQS   88 (90)
T ss_dssp             SSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCTTCC
T ss_pred             CCCCHHHHHHHHHhhcccceeeeccCCCCcccCCEEEEEECCHHHHHHHHhcCCccCCEEeEEEeCCCCCC
Confidence            479999999999999999999988643     799999999999999999865566778999999987654

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=6.5e-10  Score=90.05  Aligned_cols=63  Identities=24%  Similarity=0.310  Sum_probs=54.5

Q ss_pred             CCHHHHHHHhhccCCeeEEEEccC------CCceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEecCCCc
Q psy3926         427 YTRESLTKIFSKYGKINILVISPK------KRGSALLEFEHADSARRAKL-YELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       427 ~te~~L~~iFs~fG~I~~V~i~~~------kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa~~~~  489 (512)
                      .+++.|+++|++||.|++|.|..+      .+|+|||+|.+.++|.+|++ ++..+.+.+|.|+|+.++|
T Consensus        17 t~ed~l~~~F~~~G~i~~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~~n~~~~~gr~l~V~~a~~kP   86 (86)
T d2ghpa3          17 LDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKKP   86 (86)
T ss_dssp             CCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEECCCCC
T ss_pred             ccHHHHHHHHHhhhhccceeeecccCCccccceeeeEEECCHHHHHHHHhcCCCEECCEEEEEEEcCCCC
Confidence            357789999999999999988642      37899999999999999997 4677788999999998876

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.7e-09  Score=87.32  Aligned_cols=61  Identities=25%  Similarity=0.397  Sum_probs=52.3

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCC--CCceEEEec
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLP--NCPLTLNYL  485 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~--~~pL~V~wa  485 (512)
                      ..+|+++|+++|++||+|.+|.|+.+     .+|+|||+|.+.++|..|++  ++..+.  +.||.|+||
T Consensus        16 ~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kg~afV~f~~~~~a~~Ai~~lng~~~~G~~~~i~V~~A   85 (85)
T d1fxla2          16 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA   85 (85)
T ss_dssp             TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             CCCCHHHHHHHHHHhCCccccccccccccccCCCeeEEEEcCHHHHHHHHHHhCCCEeCCCCEEEEEEeC
Confidence            46999999999999999999988754     27899999999999999997  345444  478999997

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.90  E-value=1.9e-09  Score=86.83  Aligned_cols=61  Identities=28%  Similarity=0.392  Sum_probs=52.4

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh--hcCCC--CCceEEEec
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY--ELGLP--NCPLTLNYL  485 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~--~~~~~--~~pL~V~wa  485 (512)
                      -.+|+++|+++|++||.|.+|.|..++     +|+|||+|.+.++|..|++.  +..+.  ..||.|+||
T Consensus        16 ~~~te~~l~~~F~~~G~i~~~~~~~d~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~V~~A   85 (85)
T d1b7fa2          16 RTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA   85 (85)
T ss_dssp             TTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             CCCCHHHHHHHHHhhCCEeeeeeecccccccCceeEEEEECCHHHHHHHHHHHCCCEeCCCCeEEEEEEC
Confidence            369999999999999999999988643     68999999999999999973  44443  389999997

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.90  E-value=8.3e-10  Score=89.80  Aligned_cols=64  Identities=19%  Similarity=0.333  Sum_probs=56.2

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~  488 (512)
                      ..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|..|+.  ++..+.+.+|.|+||.++
T Consensus        17 ~~~t~~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~f~~~~~A~~A~~~lng~~l~g~~l~V~~a~~k   87 (88)
T d1rk8a_          17 EEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK   87 (88)
T ss_dssp             TTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEEC
T ss_pred             CCCCHHHHHHHHHHcCCcccccccccccccccccceeEEECCHHHHHHHHHHcCCCEECCEEEEEEEecCC
Confidence            469999999999999999999887643     7899999999999999996  467778899999999754

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=1.3e-09  Score=88.35  Aligned_cols=64  Identities=25%  Similarity=0.373  Sum_probs=57.6

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~  489 (512)
                      ..+++++|+++|+.||+|.+|.|..+ +|+|||+|.+.++|..|++  ++..+.+.+|+|+||....
T Consensus        18 ~~~~~~~l~~~F~~~G~i~~i~~~~~-k~~afV~f~~~~~A~~A~~~l~g~~i~g~~l~V~~A~~~~   83 (86)
T d2cpja1          18 PDITEEEMRKLFEKYGKAGEVFIHKD-KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA   83 (86)
T ss_dssp             TTCCHHHHHHHTSTTCCCSEEEEETT-TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred             CCCCHHHHHHHHHHhCCceEeeeecc-cceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCcC
Confidence            46999999999999999999999765 7999999999999999997  4778888999999997654

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=5.3e-09  Score=87.48  Aligned_cols=77  Identities=21%  Similarity=0.326  Sum_probs=62.7

Q ss_pred             CCCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh----hcCCCCCceEE
Q psy3926         407 NPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY----ELGLPNCPLTL  482 (512)
Q Consensus       407 ~~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~----~~~~~~~pL~V  482 (512)
                      ....++|-|+.=.     ..+||++|.++|+.||.|..|.|.. .+|+|||+|.+.++|..||..    ...+.+.+|.|
T Consensus        12 ~~ps~~l~v~nlp-----~~~te~~l~~~F~~fG~I~~~~~~~-~k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l~v   85 (104)
T d1wexa_          12 VSVSPVVHVRGLC-----ESVVEADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF   85 (104)
T ss_dssp             CCCCSEEEEESCC-----SSCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred             CCCCCEEEEeCCC-----CCCCHHHHHHhhhhcccceEEEEEe-cceeEEEEeCCHHHHHHHHHHHcCCCcEEeeEEEEE
Confidence            3456678887542     3699999999999999999999875 479999999999999999963    23456789999


Q ss_pred             EecCCCc
Q psy3926         483 NYLNPDV  489 (512)
Q Consensus       483 ~wa~~~~  489 (512)
                      .|+....
T Consensus        86 ~~s~~~~   92 (104)
T d1wexa_          86 NYSTSKR   92 (104)
T ss_dssp             EECSSSS
T ss_pred             EEcCCCc
Confidence            9997643

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.1e-09  Score=92.19  Aligned_cols=67  Identities=18%  Similarity=0.184  Sum_probs=58.0

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~~~~r  491 (512)
                      -.+|+++|+++|++||.|.+|.|..+     .+|||||+|.+.++|.+|++. +..+.+.+|.|.||.++.++
T Consensus        30 ~~~te~~L~~~F~~~G~i~~~~i~~d~~~~~~kg~aFV~f~~~~~a~~al~~~~~~l~G~~i~V~~a~~ke~~  102 (103)
T d1x4ba1          30 FETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREES  102 (103)
T ss_dssp             TCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSCCCC
T ss_pred             CcCCHHHHHHHHHhhCcccceeecccccCCCccCeEEEEECCHHHHHHHHHhCCCeECCEEEEEEECcccCCC
Confidence            36999999999999999999999764     379999999999999999963 44567789999999887665

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=2.8e-09  Score=88.20  Aligned_cols=68  Identities=22%  Similarity=0.214  Sum_probs=59.4

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      ..+|+++|+++|++||.|.+|.|..++     +|+|||+|.+.++|..|++  ++..+.+.+|+|.|+..+.++.
T Consensus        18 ~~~t~~~l~~~F~~~g~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~g~~~~gr~i~V~~a~~~~~~~   92 (99)
T d1whwa_          18 YTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEAS   92 (99)
T ss_dssp             TTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCSTTC
T ss_pred             CcCCHHHHHHHHHhcCCceeeeecccccccccCcceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCccC
Confidence            469999999999999999999997543     7999999999999999997  4677888999999998866543

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=9.1e-10  Score=91.95  Aligned_cols=69  Identities=20%  Similarity=0.289  Sum_probs=59.9

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVEREE  493 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~~  493 (512)
                      ..+|+++|+++|+.||.|.+|.|..++     +|+|||+|.+.++|..|++  ++..+.+.+|.|.|+.++..+..
T Consensus        18 ~~~te~~l~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~i~V~~a~~~~~~~~   93 (104)
T d1p1ta_          18 YEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEE   93 (104)
T ss_dssp             TTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTHHHH
T ss_pred             CcCCHHHHHHhhhccccccccccccccceeccCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCccc
Confidence            469999999999999999999887643     6899999999999999997  46788899999999987665543

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=1.5e-09  Score=88.79  Aligned_cols=77  Identities=17%  Similarity=0.130  Sum_probs=63.7

Q ss_pred             CCCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh----hcCCCCCceEE
Q psy3926         407 NPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY----ELGLPNCPLTL  482 (512)
Q Consensus       407 ~~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~----~~~~~~~pL~V  482 (512)
                      ....++|-|.+-..    +.+|+++|.++|+.||.|.+|.|..+ +++|||+|++.++|..|+..    ...+.+.||.|
T Consensus         5 ~~~sr~v~v~nl~~----~~~t~~eL~~lF~~fG~I~~i~i~~~-k~~afV~f~~~~~A~~A~~~l~~~~~~~~gr~l~V   79 (89)
T d1x4da1           5 VETRRVVHIMDFQR----GKNLRYQLLQLVEPFGVISNHLILNK-INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV   79 (89)
T ss_dssp             CCCCCEEEEESCCC----SSSHHHHHHTTTGGGSCEEEEEECSS-SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred             CCCCcEEEEECCCC----CcCCHHHHHHHHHhhCCeEEEEeecc-ceEEEEEEcchhhHHHHHHHHhhCCCccCCceEEE
Confidence            34567788877754    35899999999999999999999765 68999999999999999973    33467899999


Q ss_pred             EecCCC
Q psy3926         483 NYLNPD  488 (512)
Q Consensus       483 ~wa~~~  488 (512)
                      .|+...
T Consensus        80 ~~s~~~   85 (89)
T d1x4da1          80 HLSQKY   85 (89)
T ss_dssp             EEECCC
T ss_pred             EECCCc
Confidence            999754

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=3.5e-09  Score=88.55  Aligned_cols=63  Identities=22%  Similarity=0.279  Sum_probs=55.5

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~~  100 (512)
                      ..|++.|+++|++||.|..|.|...++|.|+|||.+.++|..|++.--|.  -..+|+|.|-..+
T Consensus        14 ~~te~~L~~~F~~fG~I~~v~i~~~~kg~afV~f~~~~~A~~ai~~lng~~l~g~~l~v~~s~~~   78 (109)
T d2adca1          14 RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ   78 (109)
T ss_dssp             TCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred             cCCHHHHHHHHhhccccceEEEEecccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence            47999999999999999999988888999999999999999999876554  5678999996533

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.2e-09  Score=87.40  Aligned_cols=67  Identities=24%  Similarity=0.263  Sum_probs=56.3

Q ss_pred             CCCCHHHHHHHhhccCCeeEE-EEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGKINIL-VISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V-~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r  491 (512)
                      ..+|+++|+++|++||.|.++ .|..+     .+|+|||+|.+.++|..|+.  ++..+.+.+|.|.||.++..+
T Consensus         8 ~~~te~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v~~a~~k~~k   82 (83)
T d1x5ta1           8 PEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK   82 (83)
T ss_dssp             TTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCCC
T ss_pred             CcCcHHHHHHHHHHhCceeeeEEEEeeccccccCceEEEEECCHHHHHHHHHhCCCcEECCEEEEEEEecCCCcC
Confidence            469999999999999999765 45543     37999999999999999997  466677899999999887655

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=1.2e-09  Score=87.90  Aligned_cols=63  Identities=25%  Similarity=0.302  Sum_probs=54.9

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC--------CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK--------KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNP  487 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~--------kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~  487 (512)
                      -.+|+++|+++|+.||.|.+|.|..+        .+|+|||+|.+.++|..|++  ++..+.+.+|.|.|+..
T Consensus         8 ~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g~~i~V~~a~~   80 (85)
T d2cpfa1           8 FSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISER   80 (85)
T ss_dssp             TTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSC
T ss_pred             CCCCHHHHHHHHHHhCCccccceecccccccccccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            46899999999999999999998753        16899999999999999996  46667789999999964

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.5e-09  Score=86.52  Aligned_cols=63  Identities=21%  Similarity=0.173  Sum_probs=55.6

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNP  487 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~  487 (512)
                      ..+|++.|+++|++||+|.+|.|..++     +|+|||+|.+.++|..|++  ++..+.+.+|+|.|+..
T Consensus        10 ~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~i~v~~a~~   79 (80)
T d1cvja1          10 PDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR   79 (80)
T ss_dssp             TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHTTSTTCEETTEECEEEECCC
T ss_pred             CcCCHHHHHHHHHHhCCEeEEEEEecccccCCCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence            469999999999999999999998643     6999999999999999996  46667789999999953

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.2e-09  Score=87.14  Aligned_cols=67  Identities=24%  Similarity=0.402  Sum_probs=58.4

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r  491 (512)
                      ..+|+++|+++|+.||.|..|.+..+     .+|+|||+|.+.++|..|++  ++..+.+.+|.|.||.++...
T Consensus        15 ~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~a~~~~~~   88 (90)
T d1x5sa1          15 FDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDN   88 (90)
T ss_dssp             TTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCCC
T ss_pred             CcCCHHHHHHhhhccccccceeeccccccccccceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCCC
Confidence            47999999999999999999987653     37999999999999999996  478888999999999776543

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.4e-09  Score=90.51  Aligned_cols=61  Identities=26%  Similarity=0.336  Sum_probs=54.0

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~  489 (512)
                      ..++++|+++|++||.|.+|.|   .+|+|||+|.+.++|.+||+  ++..+.+.+|.|.|+.++.
T Consensus        27 ~~~~~~L~~~F~~~G~i~~~~i---~rg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~   89 (98)
T d1wf2a_          27 VVKKSDVEAIFSKYGKIVGCSV---HKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEPK   89 (98)
T ss_dssp             TCCHHHHHHSSTTSSCEEEEEE---ETEEEEEEESSHHHHHHHHHTTTTCEETTEECEEEETTSCC
T ss_pred             cCCHHHHHHHHhhcCCEEEEEE---eCCeEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence            4778899999999999999998   47999999999999999997  4577788999999997643

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.6e-09  Score=90.51  Aligned_cols=67  Identities=12%  Similarity=0.200  Sum_probs=58.2

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r  491 (512)
                      ..+|+++|+++|+.||.|.+|.+..++     +|+|||+|++.++|..||.  ++..+.+.+|.|.|++++.++
T Consensus        28 ~~~te~~l~~~F~~~G~i~~~~~~~~~~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~~i~V~~a~~k~~~  101 (102)
T d2cpza1          28 QEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS  101 (102)
T ss_dssp             SSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCCC
T ss_pred             CCCCHHHHHHHHHhhccccccceeeecccCCCccceEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEeCCCCCC
Confidence            469999999999999999999877542     6899999999999999996  466678899999999887654

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.3e-09  Score=88.48  Aligned_cols=65  Identities=12%  Similarity=0.143  Sum_probs=56.6

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r  491 (512)
                      -.+|+++|+++|+.||.|.+|.|..  +|+|||+|.+.++|.+||.  ++..+.+..|.|.|++.++.+
T Consensus        10 ~~~~~~~l~~~F~~~G~v~~~~i~~--~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~~~~~~~~   76 (87)
T d3begb1          10 PSGSWQDLKDHMREAGDVCYADVYR--DGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG   76 (87)
T ss_dssp             SSCCTTHHHHHHGGGSCEEEEEECT--TSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred             CcCCHHHHHHHHhhhcccccccccc--cceeeEEeCCHHHHHHHHHHhCCCEECCcEeEEeEEecCcCC
Confidence            3689999999999999999998865  4999999999999999996  578888999999998755443

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=4.6e-09  Score=88.01  Aligned_cols=63  Identities=21%  Similarity=0.277  Sum_probs=56.5

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~  489 (512)
                      .+|+++|+++|+.||.|..|.|.. .+|+|||+|.+.++|.+|++  ++..+.+.+|.|.|+....
T Consensus        21 ~~t~~~L~~~F~~fG~I~~v~l~~-~kg~afV~f~~~~~A~~A~~~lng~~~~gr~l~v~~a~~~~   85 (111)
T d1whxa_          21 GTLAAEIQETFSRFGSLGRVLLPE-GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV   85 (111)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEECCS-SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred             CCCHHHHHhhhhccCCccEEEeec-cCceEEEEEcCHHHHHHHHHHHcCCccCCCeEEEEECCCCc
Confidence            699999999999999999998854 57999999999999999997  4788889999999997543

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=5.7e-09  Score=86.21  Aligned_cols=76  Identities=18%  Similarity=0.267  Sum_probs=60.6

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCC--CCCceEEEe
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGL--PNCPLTLNY  484 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~--~~~pL~V~w  484 (512)
                      ..++|-|.     +.+..+|++.|+++|++||.|..|.+..+ +++|||+|.+.++|..|+..  +..+  .+.+|+|.|
T Consensus        16 Ps~tl~V~-----nLp~~~t~~~l~~~f~~~G~i~~~~~~~~-~~~afV~f~~~~~A~~A~~~l~~~~i~g~~~~l~v~~   89 (97)
T d1whya_          16 PTTRLWVG-----GLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF   89 (97)
T ss_dssp             CCSCEEEE-----CCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred             CCCEEEEc-----CCCCCCCHHHHHHHHHhhcccceEeeecc-ccEEEeccCCHHHHHHHHHHhCCCEeCCCceEEEEEe
Confidence            44566665     22246999999999999999999998765 78999999999999999973  3333  346899999


Q ss_pred             cCCCcc
Q psy3926         485 LNPDVE  490 (512)
Q Consensus       485 a~~~~~  490 (512)
                      +++.|.
T Consensus        90 ak~~~~   95 (97)
T d1whya_          90 AKSGPS   95 (97)
T ss_dssp             CCCCCC
T ss_pred             CCCCCC
Confidence            987654

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=2.4e-09  Score=85.02  Aligned_cols=62  Identities=16%  Similarity=0.322  Sum_probs=55.4

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN  486 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~  486 (512)
                      -.+|+++|+++|+.||+|.+|.|..++    +|+|||+|.+.++|..|++  ++..+.+.+|.|+||.
T Consensus        10 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~V~~a~   77 (78)
T d1no8a_          10 FGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT   77 (78)
T ss_dssp             TTCCHHHHHHHHHHHSCEEEEEESCSSCCCSCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             CCCCHHHHHHHHHHhCCCeEEEEEEeeccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence            369999999999999999999998643    7899999999999999997  4677788999999985

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.84  E-value=2.3e-09  Score=93.81  Aligned_cols=68  Identities=22%  Similarity=0.362  Sum_probs=59.2

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      -.+|+++|+++|+.||.|.+|.|..+     .+|+|||+|.+.++|..||.  ++..+.+.+|.|.|+.+...+.
T Consensus        52 ~~~te~~l~~~F~~~G~i~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~~~~~p  126 (139)
T d1u6fa1          52 TTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRP  126 (139)
T ss_dssp             TTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCCC
T ss_pred             CCCCHHHHHHHHHhhccccccccccccccccccceeeEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCCCCCC
Confidence            46999999999999999999988753     27999999999999999997  4677889999999998765553

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.1e-09  Score=87.48  Aligned_cols=66  Identities=18%  Similarity=0.158  Sum_probs=56.2

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--h-cCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--E-LGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~-~~~~~~pL~V~wa~~~~~r  491 (512)
                      ..+|+++|+++|++||.|.++.+.. ++|+|||+|.+.++|..|++.  + ..+.+.+|.|.|+.++..|
T Consensus        11 ~~~te~~L~~~F~~~G~i~~~~~~~-~rg~aFV~f~~~~~A~~Ai~~lng~~~~~G~~i~V~~a~~k~~r   79 (80)
T d2cqha1          11 PAVTADDLRQLFGDRKLPLAGQVLL-KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKLR   79 (80)
T ss_dssp             TTCCHHHHHHHHHHTTCCCSSCEEE-ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCCC
T ss_pred             CCCCHHHHHHHHHHhCcEEEeEEec-ccceEEEEECCHHHHHHHHHHhCCCeEECCEEEEEEEcCCcCcC
Confidence            4699999999999999998776654 479999999999999999974  4 3467899999999987655

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=2.5e-09  Score=85.12  Aligned_cols=63  Identities=17%  Similarity=0.294  Sum_probs=54.6

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEcc-----CCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNP  487 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~-----~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~  487 (512)
                      ..+|+++|+++|+.||.|..+++..     ..+|+|||+|.+.++|.+|++  ++..+.+.+|.|+|+.|
T Consensus        11 ~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i~V~~a~P   80 (81)
T d2ghpa1          11 PSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNP   80 (81)
T ss_dssp             TTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CcCCHHHHHHHHHHhCcEEeeeeecccccccccceeEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence            4699999999999999998877653     347999999999999999997  47778889999999976

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=4.8e-09  Score=86.29  Aligned_cols=67  Identities=18%  Similarity=0.348  Sum_probs=55.2

Q ss_pred             CCCCHHHHHHHhhccCC-eeEEEEccC------CCceEEEEEcCHHHHHHHHHh----hcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGK-INILVISPK------KRGSALLEFEHADSARRAKLY----ELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~-I~~V~i~~~------kkg~A~V~F~s~~~A~~Ai~~----~~~~~~~pL~V~wa~~~~~r  491 (512)
                      ..+|++.|+++|+.||+ |.+|.|..+      .+|+|||+|.+.++|..|++.    ...+.+.+|.|.||.++++.
T Consensus        11 ~~~te~~l~~~f~~~g~~i~~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~V~~A~p~~~~   88 (96)
T d2disa1          11 KMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDV   88 (96)
T ss_dssp             TTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCST
T ss_pred             CcCCHHHHHHHHHHhCCcceEEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEEEEEcCCCCCC
Confidence            47999999999999996 999998653      378999999999999999963    23334789999999875443

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=5.7e-09  Score=85.50  Aligned_cols=67  Identities=16%  Similarity=0.271  Sum_probs=56.8

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh--------hcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY--------ELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~--------~~~~~~~pL~V~wa~~~~~r  491 (512)
                      ..+|++.|+++|+.||+|.++.+..+     .+|+|||+|.+.++|..||+.        +..+.+.+|.|.|+.++++.
T Consensus        18 ~~~te~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr~l~v~~a~~k~~a   97 (98)
T d1x4ha1          18 FDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEA   97 (98)
T ss_dssp             TTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCC
T ss_pred             CcCCHHHHHHHHhccccceeeeeccccccccccceEEEEEcCHHHHHHHHHHcccccccCCcEECCEEEEEEECCCCCcC
Confidence            47999999999999999999988754     379999999999999999973        23455689999999887654

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=4.2e-09  Score=88.99  Aligned_cols=63  Identities=29%  Similarity=0.363  Sum_probs=56.2

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC--CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK--KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNP  487 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~--kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~  487 (512)
                      ..+|++.|+++|+.||.|.+|.|..+  .+|+|||+|.+.++|..||.  ++..+.+.+|.|.|+.+
T Consensus        17 ~~~te~~l~~~F~~~G~v~~i~~~~~~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~   83 (114)
T d2f9da1          17 YKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNA   83 (114)
T ss_dssp             TTCCHHHHHHHHHTTSCEEEEEEECSTTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred             CCCCHHHHHHHHhhcCCeEeecccccCCcCCeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            46999999999999999999998754  37999999999999999997  46777889999999865

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=5.7e-09  Score=87.22  Aligned_cols=64  Identities=22%  Similarity=0.206  Sum_probs=55.2

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHhh-cCCCCCceEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLYE-LGLPNCPLTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~~-~~~~~~pL~V~wa~~~  488 (512)
                      ..+|+++|+++|+.||.|.+|.|+.+     .+|+|||+|.+.++|.+||+.. ..+.+.+|.|+|+..+
T Consensus        20 ~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~Gr~l~V~~a~~~   89 (103)
T d2cqda1          20 YHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLG   89 (103)
T ss_dssp             SSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTTT
T ss_pred             CcCcHHHHHHHHhhcccccceeccccccccccCCeEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcCCC
Confidence            46999999999999999999999864     3799999999999999999742 2356789999999764

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=3.9e-09  Score=87.77  Aligned_cols=63  Identities=17%  Similarity=0.225  Sum_probs=55.2

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh----hcCCCCCceEEEecCCCc
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY----ELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~----~~~~~~~pL~V~wa~~~~  489 (512)
                      .+|+++|.++|+.||.|.+|.|..+ +|+|||+|.+.++|..||.+    +..+.+.+|.|.|+..+.
T Consensus        30 ~~te~~l~~~F~~fG~V~~v~~~~~-k~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~l~V~~s~~~~   96 (99)
T d1x4fa1          30 GYSDSAVLKLAEPYGKIKNYILMRM-KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYK   96 (99)
T ss_dssp             SCCSHHHHTTTTTTSCCSEEEEETT-TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCS
T ss_pred             ccCHHHHHhhhccccceeEEEEeec-CCcEEEEecchHHHHHHHHHHhcCCceECCEEEEEEEcCCcc
Confidence            5899999999999999999998765 69999999999999999962    455778999999997553

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=5.5e-09  Score=84.11  Aligned_cols=65  Identities=18%  Similarity=0.187  Sum_probs=56.3

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVE  490 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~  490 (512)
                      ..+|+++|+++|+.||.|..+.+. ..+|+|||+|.+.++|..|+.  ++..+.+.+|.|.|++|+..
T Consensus        18 ~~~te~~l~~~F~~~g~i~~~~~~-~~rg~afV~f~~~~~A~~Ai~~l~~~~i~g~~i~V~~akP~~~   84 (86)
T d2cpda1          18 LSTSEEMIEKEFNNIKPGAVERVK-KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK   84 (86)
T ss_dssp             TTCCHHHHHHHHHTTSTTCEEEEE-ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred             CCCCHHHHHHhhcccceeeeEEEc-cccEEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEeccCCCC
Confidence            479999999999999999887774 458999999999999999997  46677889999999986543

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=7.6e-09  Score=85.01  Aligned_cols=64  Identities=19%  Similarity=0.281  Sum_probs=56.6

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC--CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK--KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~--kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~  488 (512)
                      ..+|+++|+++|+.||.|..|.+..+  .+|+|||+|.+.++|..||+  ++..+.+.+|.|.||++.
T Consensus        24 ~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g~~l~V~~a~~~   91 (95)
T d1x4aa1          24 PDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG   91 (95)
T ss_dssp             TTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred             CCCCHHHHHHHHhcCCceEEEEecccccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeccCC
Confidence            46999999999999999999988753  47999999999999999996  467788899999999764

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=7.7e-09  Score=80.72  Aligned_cols=61  Identities=18%  Similarity=0.211  Sum_probs=53.6

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEec
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYL  485 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa  485 (512)
                      -++|+++|+++|+.||.|..+.+..+     .+|+|||+|.+.++|.+|++. +..+.+.+|.|.+|
T Consensus         9 ~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~afV~F~~~~~a~~al~~~~~~l~gr~i~V~~A   75 (75)
T d2msta_           9 VNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA   75 (75)
T ss_dssp             SSCCHHHHHHHHHTTSCCSEECCBCCTTCTTSCCEEEEECSCHHHHHHHHHCSSCCBTTBCCEEEEC
T ss_pred             CCCCHHHHHHHHHHhCCcceeeeeeeccccccCceeEEEECCHHHHHHHHhcCCCEECCeEEEEEEC
Confidence            47999999999999999999987653     379999999999999999973 56778899999987

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.2e-08  Score=82.54  Aligned_cols=77  Identities=21%  Similarity=0.274  Sum_probs=62.6

Q ss_pred             CCCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh----hcCCCCCceEE
Q psy3926         407 NPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY----ELGLPNCPLTL  482 (512)
Q Consensus       407 ~~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~----~~~~~~~pL~V  482 (512)
                      +...++|-|..=.     ..+|+++|.++|+.||.|.+|.+..+ +|+|||+|.+.++|.+|+..    ...+.+.+|+|
T Consensus         5 ~~Ps~~l~V~nLp-----~~~t~~~L~~~f~~~G~i~~v~~~~~-~~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~l~v   78 (88)
T d2cq1a1           5 GAPSRVLHIRKLP-----GEVTETEVIALGLPFGKVTNILMLKG-KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI   78 (88)
T ss_dssp             SSCCSEEEEESCC-----TTCCHHHHHHTTTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred             CCCCCEEEEeCCC-----CCCCHHHHHHHHhccccccccccccc-ceEEEEEeCCHHHHHHHHHHHccCCCccCCCEEEE
Confidence            3456677776543     25999999999999999999988754 69999999999999999963    34567789999


Q ss_pred             EecCCCc
Q psy3926         483 NYLNPDV  489 (512)
Q Consensus       483 ~wa~~~~  489 (512)
                      .|+..+.
T Consensus        79 ~~sk~~~   85 (88)
T d2cq1a1          79 QYSNHKE   85 (88)
T ss_dssp             EECSCSS
T ss_pred             EECCCCC
Confidence            9997543

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=5.5e-09  Score=87.91  Aligned_cols=66  Identities=17%  Similarity=0.145  Sum_probs=56.4

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCCCcccc
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      +.+++.|+++|+.||.|.++.+.+ .+|+|||+|.+.++|.+|+..  +..+.+.+|.|.|+++.....
T Consensus        21 d~~k~~l~~lF~~~G~i~~~~~~k-~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~~~~~   88 (104)
T d1weya_          21 SETRAKFESLFRTYDKDTTFQYFK-SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLHIGS   88 (104)
T ss_dssp             TTHHHHHHHHHHTTCSSCEEEEET-TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSSCCS
T ss_pred             HHHHHHHHHHhcccccceEEEEec-CCCEEEEEECCHHHHHHHHHHhcccccCCCEeEEeecccCCCCC
Confidence            344578999999999999999875 478999999999999999984  677888999999998765544

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=5.8e-09  Score=84.26  Aligned_cols=71  Identities=13%  Similarity=0.161  Sum_probs=58.2

Q ss_pred             ceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEec
Q psy3926         411 YRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYL  485 (512)
Q Consensus       411 ~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa  485 (512)
                      ++|-|.--.     ..+|+++|+++|+.||+|.+|.|..++    +|+|||+|.+.++|.+|++. +..+.+.+|.|.|.
T Consensus         7 rtvfV~nlp-----~~~te~~l~~~F~~~G~v~~v~l~~~~~~~~kG~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~   81 (85)
T d1zh5a2           7 RSVYIKGFP-----TDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK   81 (85)
T ss_dssp             TEEEEECCC-----TTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHTCCCCEETTEECEEEEG
T ss_pred             CEEEEECCC-----CCCCHHHHHHHHHHhcccccceeeeeccCCcceEEEEEEcCHHHHHHHHHHCCCEECCEEEEEEEc
Confidence            355555432     368999999999999999999997643    69999999999999999974 56677889999996


Q ss_pred             C
Q psy3926         486 N  486 (512)
Q Consensus       486 ~  486 (512)
                      .
T Consensus        82 ~   82 (85)
T d1zh5a2          82 D   82 (85)
T ss_dssp             G
T ss_pred             C
Confidence            4

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=98.73  E-value=6.3e-09  Score=85.69  Aligned_cols=78  Identities=18%  Similarity=0.193  Sum_probs=64.8

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN  486 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~  486 (512)
                      ..++|-|.-=.     ..+|+++|+++|+.||.|..+......+|+|||+|.+.++|..|+.  ++..+.+.+|.|.|+.
T Consensus        15 ~~~~l~V~nL~-----~~~te~~l~~~F~~~g~v~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~gr~i~V~~a~   89 (96)
T d1fjca_          15 AARTLLAKNLS-----FNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG   89 (96)
T ss_dssp             GGGEEEEESCC-----SSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred             CCCEEEEeCCC-----CCCCHHHHHHHHHhcccceeeeecCccccEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence            44566665433     3699999999999999998887766678999999999999999996  4677888999999998


Q ss_pred             CCccc
Q psy3926         487 PDVER  491 (512)
Q Consensus       487 ~~~~r  491 (512)
                      ++..+
T Consensus        90 ~k~~~   94 (96)
T d1fjca_          90 EKGGT   94 (96)
T ss_dssp             SSCCC
T ss_pred             CCCCC
Confidence            76554

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.7e-08  Score=81.57  Aligned_cols=75  Identities=20%  Similarity=0.207  Sum_probs=58.5

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEcc-CCCceEEEEEcCHHHHHHHHHh--hcCCC-CCceEEEe
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISP-KKRGSALLEFEHADSARRAKLY--ELGLP-NCPLTLNY  484 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~-~kkg~A~V~F~s~~~A~~Ai~~--~~~~~-~~pL~V~w  484 (512)
                      ..++|-|.   +  .+..+|+++|+++|+.||.|..+++.. +.+|+|||+|.+.++|.+|+..  +..+. +.+|+|.|
T Consensus         9 Ps~tL~V~---N--Lp~~~te~~l~~~F~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~~~~i~~g~~l~v~~   83 (88)
T d2adca2           9 PSATLHLS---N--IPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF   83 (88)
T ss_dssp             SCSEEEEE---C--CCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred             CCCEEEEE---C--CCCCCCHHHHHHHhhccCCEEEEEEeeecccceeEEEECCHHHHHHHHHhccCCEecCCCEEEEEe
Confidence            34566554   2  224699999999999999998776554 5589999999999999999964  54443 58999999


Q ss_pred             cCCC
Q psy3926         485 LNPD  488 (512)
Q Consensus       485 a~~~  488 (512)
                      +++.
T Consensus        84 sk~~   87 (88)
T d2adca2          84 SKST   87 (88)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            9764

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.7e-09  Score=88.39  Aligned_cols=78  Identities=19%  Similarity=0.231  Sum_probs=63.5

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEcc-----CCCceEEEEEcCHHHHHHHHH--hhcCCCCCceE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKL--YELGLPNCPLT  481 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~-----~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~  481 (512)
                      ..++|-|.   +  .+..+|+++|+++|+.||.|..+.+..     +.+|+|||+|.+.++|..|++  ++..+.+.+|.
T Consensus        17 ps~tl~V~---n--Lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~~l~   91 (102)
T d2cpxa1          17 PNKVLYLK---N--LSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV   91 (102)
T ss_dssp             CCSEEEEE---C--CCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred             CCCEEEEe---C--CCCCCCHHHHHHHHhhccceeeEEeecccccccccccceEEeccHHHHHHHHHHhCCCEECCEEEE
Confidence            34566554   2  224699999999999999999887653     358999999999999999997  47778889999


Q ss_pred             EEecCCCccc
Q psy3926         482 LNYLNPDVER  491 (512)
Q Consensus       482 V~wa~~~~~r  491 (512)
                      |.||.++..|
T Consensus        92 V~~ak~k~~r  101 (102)
T d2cpxa1          92 IEFGKNKKQR  101 (102)
T ss_dssp             EEECCCCSCC
T ss_pred             EEeCCCcccC
Confidence            9999887665

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.2e-08  Score=80.31  Aligned_cols=61  Identities=20%  Similarity=0.225  Sum_probs=51.7

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEec
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYL  485 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa  485 (512)
                      ..+|+++|+++|++||.|.+|.|+.+     .+|+|||+|.+.++|.+|++. +..+.+.+|.|.-|
T Consensus         9 ~~~te~~l~~~F~~~G~i~~~~i~~d~~t~~~kg~afV~f~~~~~a~~Al~~~~~~l~Gr~i~V~rA   75 (75)
T d1hd0a_           9 WDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA   75 (75)
T ss_dssp             TTCCHHHHHHHHHTTSCEEEEECCCBTTTTBCCSEEEEEESSHHHHHHHHHTCCCCBTTBCCEECCC
T ss_pred             CcCCHHHHHHHHHhhccccccccccCCCCCCcCceEEEEECCHHHHHHHHhcCCCEECCCEEEeeEC
Confidence            46999999999999999999998864     379999999999999999974 45566778888543

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2e-09  Score=90.01  Aligned_cols=63  Identities=22%  Similarity=0.229  Sum_probs=55.6

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEecCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL-YELGLPNCPLTLNYLNP  487 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa~~  487 (512)
                      -.+|+++|+++|+.||.|.+|.|+.+     .+|+|||+|.+.++|.+|+. ++..+.+.+|.|+++.+
T Consensus        28 ~~~te~~l~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~a~~A~~l~g~~~~G~~l~V~~a~~   96 (101)
T d2cq4a1          28 ARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQA   96 (101)
T ss_dssp             TTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHH
T ss_pred             CCCCHHHHHHHHcCCCeEEEEEeeecCCCccccceEEEEECCHHHHHHHHHHCCCEECCEEEEEEECCC
Confidence            46999999999999999999999864     37999999999999999996 46677889999999854

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.1e-08  Score=82.31  Aligned_cols=62  Identities=16%  Similarity=0.150  Sum_probs=53.3

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLN  486 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~  486 (512)
                      .++|+++|+++|+.||.|.+|.|+.++     +|+|||+|.+.++|.+|++. +..+.+.+|.|..|.
T Consensus        16 ~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~a~~ai~~~~~~i~Gr~i~V~~A~   83 (84)
T d1l3ka1          16 FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV   83 (84)
T ss_dssp             TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred             CCCCHHHHHHHHHhhccccceeecccccCCCcccEEEEEEcCHHHHHHHHHhCCCEECCEEEEEEeee
Confidence            469999999999999999999987643     79999999999999999973 455667889998774

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=8.1e-09  Score=82.04  Aligned_cols=61  Identities=15%  Similarity=0.232  Sum_probs=53.4

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEec
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYL  485 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa  485 (512)
                      -.+|++.|+++|++||.|.+|.|+.+     .+|+|||+|.+.++|.+|+.. +..+.+.+|.|+.|
T Consensus        10 ~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~aFV~f~~~~~a~~al~~~~~~i~Gr~i~V~~A   76 (77)
T d1uawa_          10 WQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA   76 (77)
T ss_dssp             SSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred             CcCCHHHHHHHHHHhCCcceeeeecccCCCCccceEEEEECCHHHHHHHHHcCCCEECCeEEEEEEC
Confidence            46899999999999999999998754     379999999999999999974 46667789999987

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.5e-08  Score=83.51  Aligned_cols=68  Identities=18%  Similarity=0.251  Sum_probs=56.2

Q ss_pred             CCCCHHHHHHHhhccCCeeEEE--------EccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926         425 DVYTRESLTKIFSKYGKINILV--------ISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~--------i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~  489 (512)
                      ..+|+++|+++|+.||.|..+.        +..+     .+|+|||+|.+.++|..||.  ++..+.+.+|.|+||.+++
T Consensus        18 ~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~a~~~~   97 (101)
T d2cpea1          18 DSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKP   97 (101)
T ss_dssp             TTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCC
T ss_pred             CcCCHHHHHHHHHHCceEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhCCCEECCEEEEEEEcCCCC
Confidence            4799999999999999986433        3322     26999999999999999997  4777888999999999877


Q ss_pred             ccc
Q psy3926         490 ERE  492 (512)
Q Consensus       490 ~r~  492 (512)
                      ++.
T Consensus        98 p~~  100 (101)
T d2cpea1          98 PMN  100 (101)
T ss_dssp             CST
T ss_pred             CCC
Confidence            653

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.1e-08  Score=80.89  Aligned_cols=61  Identities=10%  Similarity=0.232  Sum_probs=50.5

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEec
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYL  485 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa  485 (512)
                      -.+|+++|+++|++||+|.+|.|+.++     +|+|||+|.+.++|.+|+.. ...+.+..+.|+.|
T Consensus         9 ~~~te~~l~~~F~~~G~I~~v~i~~d~~t~~~rG~~FV~f~~~~~a~~al~~~~~~i~g~~i~vk~A   75 (75)
T d1x0fa1           9 PDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA   75 (75)
T ss_dssp             SSCCHHHHHHHHHHHSCEEEEECCCCTTTCCTTCCEEEEESSSHHHHHHTTCSSCCBTTBCCEEECC
T ss_pred             CCCCHHHHHHHHHHhCCcccccccccccccccccEEEEEECCHHHHHHHHhhCCCEECCEEeEEEEC
Confidence            468999999999999999999988643     79999999999999999964 23345566777654

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.65  E-value=3e-08  Score=79.35  Aligned_cols=60  Identities=17%  Similarity=0.331  Sum_probs=52.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--C-CCCCcEEeec
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--L-PNCPLTLNYL   97 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~-~~nPl~~~~l   97 (512)
                      +++++.|.++|++||.|..|.|.++++|.|+|||.+.++|..|+..=-|  + .+.||+|+|-
T Consensus        19 ~~t~~~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~i~v~~a   81 (83)
T d2b0ga1          19 ETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFA   81 (83)
T ss_dssp             TCCHHHHHHHHTTSTTEEEEEECTTTCSCEEEEESSHHHHHHHHHHHTTCBSSTTCBCEEEEC
T ss_pred             CCCHHHHHhhhccCccEEEeeeecccceeEEEecCCHHHHHHHHHHhCCcEeCCCcEEEEEEe
Confidence            6999999999999999999988888899999999999999999875333  2 2479999994

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.65  E-value=4.2e-08  Score=77.33  Aligned_cols=62  Identities=18%  Similarity=0.273  Sum_probs=52.9

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~  488 (512)
                      .++|+++|+++|++|| |..+.+ ...+|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+...
T Consensus         8 ~~~t~~~l~~~F~~~g-~~~~~~-~~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V~~a~~d   71 (75)
T d1wi6a1           8 GDVTNQEVHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTD   71 (75)
T ss_dssp             TTCCHHHHHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCST
T ss_pred             CcCCHHHHHHHHhccc-ccceee-cccceeEEEEECCHHHHHHHHHHhCCccCCCCEEEEEEeCCC
Confidence            4799999999999999 545544 4468999999999999999996  477888999999999654

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2e-08  Score=83.46  Aligned_cols=63  Identities=13%  Similarity=0.135  Sum_probs=53.2

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK----RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNP  487 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~  487 (512)
                      ..+|+++|+++|+.||.|..+.+..+.    +|+|||+|.+.++|.+||.  ++..+.+.|+.|.|+.|
T Consensus        28 ~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~i~gr~~~v~~~~P   96 (101)
T d1x5oa1          28 LSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEP   96 (101)
T ss_dssp             TTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSC
T ss_pred             CCCCHHHHHHHHhhcccccceeeecccccccccceeEEeCCHHHHHHHHHHhCCCEECCcCCccCCCCC
Confidence            469999999999999999998877543    6899999999999999996  46777777777777653

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=9.2e-09  Score=86.51  Aligned_cols=60  Identities=17%  Similarity=0.331  Sum_probs=53.3

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEec
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYL  485 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa  485 (512)
                      .++|+.|+++|++||.|.+|.|+.+    .+|+|||+|.+.++|.+|+.  ++..+.+.+|.|+|.
T Consensus        38 ~~~ed~l~e~f~k~G~I~~v~I~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr~i~v~~s  103 (104)
T d1jmta_          38 EFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS  103 (104)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred             hhhHHHHHHHhccCCCEEEEEeecCCCCCEeeEEEEEEechhHHHHHHHHHCCCEECCEEEEEEEC
Confidence            4778999999999999999999864    37999999999999999997  477788899999885

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=2.5e-08  Score=82.91  Aligned_cols=66  Identities=23%  Similarity=0.261  Sum_probs=54.0

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC------CCceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK------KRGSALLEFEHADSARRAKL-YELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~------kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa~~~~~r  491 (512)
                      -.+|+++|+++|+.|| |.++.++.+      .+|+|||+|.+.++|.+|+. ++..+.+.+|+|.||.++..+
T Consensus        25 ~~~te~~l~~~f~~~g-~~~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~~~~~~~~~gr~l~V~~a~~~~~~   97 (104)
T d1wi8a_          25 YDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQAQDK   97 (104)
T ss_dssp             SSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCCCCCC
T ss_pred             CcCCHHHHHHHHHHhc-cccceeeeeeccCCCcceeeeEEECCHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence            4799999999999999 656665542      26899999999999998886 467778899999999876544

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=3.2e-08  Score=83.02  Aligned_cols=63  Identities=29%  Similarity=0.416  Sum_probs=52.3

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-cCCCceEEEEeccHHHHHHHHHhhhCC----CCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-PKKRGSALLEFEHADSARRAKLYELGL----PNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-~k~~g~A~vef~~~~aa~~a~~~e~g~----~~nPl~~~~l~~~  100 (512)
                      ..|++.|+++|++||+|..+.|. .+++|.|+|||.+.++|..|+..-.|.    ...+|.|.|=.+.
T Consensus        18 ~vte~~L~~~F~~~G~i~~~~i~~~~~~g~aFV~f~~~e~A~~Ai~~ln~~~l~~~~~~l~v~~s~~~   85 (108)
T d2adba1          18 PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT   85 (108)
T ss_dssp             TTHHHHHHHHHTTTSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHHSCCSSTTCCCCEEEECSSC
T ss_pred             CCCHHHHHHHHccCCcEEEEEEEeeCCCCeEEEEECCHHHHHHHHHHHCCCEeccCCcEEEEEecCCc
Confidence            58999999999999999998764 466899999999999999999875554    3567888885443

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=2.1e-08  Score=80.05  Aligned_cols=58  Identities=33%  Similarity=0.437  Sum_probs=49.8

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHH--hhcCCCCCceEE
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKL--YELGLPNCPLTL  482 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V  482 (512)
                      ..+|+++|+++|++||.|.+|.|..++     +|+|||+|.+.++|..|+.  ++..+.+.+|+|
T Consensus        19 ~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V   83 (83)
T d2cqca1          19 LYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV   83 (83)
T ss_dssp             SSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred             CCCCHHHHHHHHHHhCCCccccccccccccccccceEEEECCHHHHHHHHHHcCCCEECCEEeEC
Confidence            469999999999999999999887543     6899999999999999996  366667777776

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=3e-08  Score=78.70  Aligned_cols=61  Identities=26%  Similarity=0.357  Sum_probs=53.2

Q ss_pred             CCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          39 YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        39 Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      -|++.|+++|++||+|.++.|.+ .+|.|+|+|.+.++|..|+..  -.-+-+.+|+|+|-.|+
T Consensus        15 ~te~~L~~~F~~~G~I~~v~~~~-~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~   77 (79)
T d2bz2a1          15 MTPTLLRGAFSPFGNIIDLSMDP-PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ   77 (79)
T ss_dssp             CCHHHHHHHHSTTCCCSCEEEET-TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred             CCHHHHHHHHhccCccceeeecc-CCCEEEEEEcccHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence            79999999999999999998864 579999999999999999964  34456789999998765

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=2.8e-08  Score=78.37  Aligned_cols=61  Identities=21%  Similarity=0.360  Sum_probs=52.8

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCC-----CceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEec
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYL  485 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~k-----kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa  485 (512)
                      -.+|+++|+++|+.||.|..+.++.++     +|+|||+|.+.++|.+|+.. +..+.+.+|.|+.|
T Consensus        12 ~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~~~~al~~~~~~l~Gr~i~V~~A   78 (79)
T d1l3ka2          12 EDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA   78 (79)
T ss_dssp             TTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred             CcCCHHHHHHHHHHhccccccccccCCCCcccccEEEEEEcCHHHHHHHHHhCCCEECCEEEEEEEC
Confidence            479999999999999999999887643     79999999999999999974 45667789999876

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.61  E-value=2.3e-08  Score=82.90  Aligned_cols=66  Identities=14%  Similarity=0.156  Sum_probs=57.9

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCcccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      ..+++++|+++|+.||.|..|.|.  ++|+|||+|.+.++|..||+  ++..+.+..|.|.|++..+.+.
T Consensus        25 ~~~~~~~L~~~F~~~G~v~~~~i~--~~g~afV~f~~~~~a~~Ai~~lng~~~~g~~i~v~~~~~~~~~~   92 (98)
T d1wg4a_          25 PSGSWQDLKDHMREAGDVCYADVQ--KDGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPERS   92 (98)
T ss_dssp             SSCCHHHHHHHHTTSSCEEEEEEE--TTTEEEEEESSHHHHHHHHHHHSSEEEECTTSCEEEEEEECCCS
T ss_pred             CCCCHHHHHHHHHhhccccccccc--ccceEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEEecCCCCC
Confidence            469999999999999999999886  46999999999999999996  5777888999999997765554

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=98.60  E-value=5.3e-09  Score=85.68  Aligned_cols=75  Identities=17%  Similarity=0.111  Sum_probs=60.8

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEcc----CCCceEEEEEcCHHHHHHHHH-hhcCCCCCceEEE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKL-YELGLPNCPLTLN  483 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~----~kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~  483 (512)
                      ...+|-|.     +.+..+|+++|+++|+.||.|.++.|..    ..+|+|||+|.+.++|.+|++ ++..+.+.+|.|.
T Consensus        12 ~~~~ifV~-----nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~g~~kg~afv~F~~~e~a~~Al~~~g~~~~g~~i~V~   86 (91)
T d1fjeb1          12 TPFNLFIG-----NLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLE   86 (91)
T ss_dssp             SSEEEEEE-----CCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEE
T ss_pred             CCcEEEEe-----CccCcchHHHHHHHHhcCCcEEEeeeeecCCCCccEEeEEeeCCHHHHHHHHhcCCcEECCEEEEEE
Confidence            34456552     2335799999999999999999887754    348999999999999999997 4677788999999


Q ss_pred             ecCCC
Q psy3926         484 YLNPD  488 (512)
Q Consensus       484 wa~~~  488 (512)
                      ||.++
T Consensus        87 ~ak~k   91 (91)
T d1fjeb1          87 KPKGR   91 (91)
T ss_dssp             CCCCS
T ss_pred             ecCCC
Confidence            99764

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=3.2e-08  Score=78.06  Aligned_cols=60  Identities=20%  Similarity=0.178  Sum_probs=51.9

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCC---CceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEec
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKK---RGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYL  485 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~k---kg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa  485 (512)
                      .+|+++|+++|+.||.|.+|.|+.++   +|+|||+|.+.++|.+|+.. +..+.+.+|.|+.+
T Consensus        11 ~~t~~~l~~~F~~~G~I~~v~~~~~~~~~~~~afV~F~~~~~a~~Al~~~~~~i~g~~i~V~~~   74 (75)
T d2ghpa2          11 SYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL   74 (75)
T ss_dssp             TCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred             CCCHHHHHHHHhcCCceEEEEEEeeccccceEEEEEEcchHHhHHHHHhcCcEECCEEEEEEEC
Confidence            68999999999999999999998643   68999999999999999963 45567788988764

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=2.2e-08  Score=81.50  Aligned_cols=67  Identities=25%  Similarity=0.459  Sum_probs=56.0

Q ss_pred             CCCCHHHHH----HHhhccCCeeEEEEccC--CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLT----KIFSKYGKINILVISPK--KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~----~iFs~fG~I~~V~i~~~--kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~~r  491 (512)
                      ..+|+++|+    ++|++||+|.+|.+..+  .+|+|||+|.+.++|..|++  ++..+.+.+|.|.|+.++...
T Consensus        13 ~~~t~~dl~~~l~~~f~~~G~i~~i~~~~~~~~~g~afV~F~~~~~A~~A~~~~~~~~~~g~~l~v~~ak~~~~~   87 (91)
T d1nu4a_          13 EKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI   87 (91)
T ss_dssp             TTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred             CCCCHHHHHHHHHHHhcccccccceEEeeeccCCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeCCCchh
Confidence            368888775    46899999999988753  48999999999999999996  466678899999999877654

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.6e-08  Score=81.91  Aligned_cols=65  Identities=20%  Similarity=0.284  Sum_probs=56.7

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCCCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~~~nPl~~~~l~~~~~  102 (512)
                      .-|++.|+++|++||.|.+|.+....+|.|+|+|.+.++|+.|+.+-.-+-..+|.|.|-.|...
T Consensus        16 ~~te~~L~~~F~~~G~v~~v~~~~~~~gfafV~f~~~~~a~~a~~~~~~i~g~~l~v~~a~~k~~   80 (88)
T d1wf0a_          16 DMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHN   80 (88)
T ss_dssp             SSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCCCC
T ss_pred             CCCHHHHHHHHHHcCCceEEEEeeccCceEEEEECCHHHHHHHHhCCCEECCEEeEEEeCCCCCC
Confidence            47899999999999999999988888999999999999999998765445678899999866543

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=2.8e-08  Score=80.81  Aligned_cols=58  Identities=22%  Similarity=0.330  Sum_probs=49.5

Q ss_pred             CCCHHHH---HHHhhccCCeeEEEEccCC--------CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEE
Q psy3926         426 VYTRESL---TKIFSKYGKINILVISPKK--------RGSALLEFEHADSARRAKL--YELGLPNCPLTLN  483 (512)
Q Consensus       426 ~~te~~L---~~iFs~fG~I~~V~i~~~k--------kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~  483 (512)
                      .+++++|   .++|++||+|.+|.|..++        +|+|||+|++.++|.+||.  ++..+.+.+|+|+
T Consensus        19 ~~t~~~l~~~~e~F~~~G~I~~v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng~~~~gr~lkvS   89 (89)
T d2cpia1          19 RLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKAS   89 (89)
T ss_dssp             TTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred             ccCHHHHHHHHHHhcccCCceEEEEeeccCcCCCCCcceEEEEecccchhHHHHHHHhCCCEECCEEEEEC
Confidence            5888888   6789999999999998642        3899999999999999997  4677788888874

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=1.1e-07  Score=79.41  Aligned_cols=62  Identities=19%  Similarity=0.263  Sum_probs=53.5

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      +.+++.|+++|++||+|..|.|.. .+|.|+|+|.+.++|..|++.  -.-+.+.||.|+|-...
T Consensus        21 ~~t~~~L~~~F~~fG~I~~v~l~~-~kg~afV~f~~~~~A~~A~~~lng~~~~gr~l~v~~a~~~   84 (111)
T d1whxa_          21 GTLAAEIQETFSRFGSLGRVLLPE-GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG   84 (111)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEECCS-SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred             CCCHHHHHhhhhccCCccEEEeec-cCceEEEEEcCHHHHHHHHHHHcCCccCCCeEEEEECCCC
Confidence            589999999999999999998864 579999999999999999864  55556789999997543

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=2e-07  Score=77.60  Aligned_cols=62  Identities=24%  Similarity=0.437  Sum_probs=52.5

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhh--hC--CCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYE--LG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e--~g--~~~nPl~~~~l~~~  100 (512)
                      ..|++.|..+|++||.|..+.|.+ .||.|+|||.+.++|..|+..-  .+  .-..||+|.|-...
T Consensus        26 ~~te~~l~~~F~~fG~I~~~~~~~-~k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l~v~~s~~~   91 (104)
T d1wexa_          26 SVVEADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK   91 (104)
T ss_dssp             SCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred             CCCHHHHHHhhhhcccceEEEEEe-cceeEEEEeCCHHHHHHHHHHHcCCCcEEeeEEEEEEEcCCC
Confidence            589999999999999999998864 5799999999999999999743  22  34789999998643

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=6.6e-08  Score=80.13  Aligned_cols=60  Identities=17%  Similarity=0.262  Sum_probs=51.0

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhC--CCCCCcEEeecC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELG--LPNCPLTLNYLN   98 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g--~~~nPl~~~~l~   98 (512)
                      ++|++.|.++|++||.|.+|.|.+ .+|.|+|||.+.++|..|+..  ..|  .-..||+|+|=.
T Consensus        30 ~~te~~l~~~F~~fG~V~~v~~~~-~k~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~l~V~~s~   93 (99)
T d1x4fa1          30 GYSDSAVLKLAEPYGKIKNYILMR-MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE   93 (99)
T ss_dssp             SCCSHHHHTTTTTTSCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred             ccCHHHHHhhhccccceeEEEEee-cCCcEEEEecchHHHHHHHHHHhcCCceECCEEEEEEEcC
Confidence            589999999999999999998764 369999999999999999963  333  457899999864

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=7.1e-08  Score=78.19  Aligned_cols=62  Identities=10%  Similarity=0.216  Sum_probs=51.6

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~  488 (512)
                      ..+|+++|+++|+.|| |..+.+ ...+|+|||+|.+.++|.+||.  ++..+.+.+|.|+|+...
T Consensus        15 ~~~t~~~l~~lF~~~G-~~~~~~-~~~kg~afV~f~~~~~A~~Ai~~ln~~~~~G~~l~V~~a~~~   78 (88)
T d1wg1a_          15 QDSNCQEVHDLLKDYD-LKYCYV-DRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD   78 (88)
T ss_dssp             SSCCHHHHHHHTCSSC-CCCEEE-EGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred             CccChHHHHHHHHhcC-ceeeee-eccCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            4799999999999999 333433 3458999999999999999996  477788999999999544

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1e-07  Score=73.80  Aligned_cols=56  Identities=21%  Similarity=0.265  Sum_probs=46.5

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH--hhcCCCCCce
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL--YELGLPNCPL  480 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL  480 (512)
                      ..+|++.|+++|+.||+|..+.+..+     .+|+|||+|.+.++|.+|+.  ++..+.+.+|
T Consensus         8 ~~~te~~l~~~F~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~Gr~~   70 (72)
T d1x4ea1           8 PGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA   70 (72)
T ss_dssp             TTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESC
T ss_pred             CcCCHHHHHHHHhhhccccccccccccccccccceeEEEECCHHHHHHHHHHhCCCEECCEEC
Confidence            47999999999999999999988753     37999999999999999996  3555544443

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=7.9e-08  Score=78.22  Aligned_cols=60  Identities=20%  Similarity=0.257  Sum_probs=51.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhC--CCCCCcEEeecC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELG--LPNCPLTLNYLN   98 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g--~~~nPl~~~~l~   98 (512)
                      ..|++.|.+||+.||.|.++.|... +|.|+|+|++.++|..|+..  ..|  +...||+|+|-.
T Consensus        20 ~~t~~eL~~lF~~fG~I~~i~i~~~-k~~afV~f~~~~~A~~A~~~l~~~~~~~~gr~l~V~~s~   83 (89)
T d1x4da1          20 KNLRYQLLQLVEPFGVISNHLILNK-INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ   83 (89)
T ss_dssp             SSHHHHHHTTTGGGSCEEEEEECSS-SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred             cCCHHHHHHHHHhhCCeEEEEeecc-ceEEEEEEcchhhHHHHHHHHhhCCCccCCceEEEEECC
Confidence            4889999999999999999988654 68999999999999999973  334  557899999965

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.1e-07  Score=76.54  Aligned_cols=62  Identities=19%  Similarity=0.301  Sum_probs=52.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~~  100 (512)
                      +.+++.|+++|++||.|..|.|... ||.|+|+|.+.++|..|+..-.|.  ...||+|+|=.+.
T Consensus        29 ~~te~~L~~~F~~fG~i~~v~i~~~-kg~afV~f~~~~~A~~Ai~~l~~~~i~g~~l~v~~ak~~   92 (96)
T d1x4ga1          29 GLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES   92 (96)
T ss_dssp             CCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred             CCCHHHHHHHHHHhCCceEEEEEec-ceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            5899999999999999999987654 799999999999999999753343  6789999996543

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.2e-07  Score=75.29  Aligned_cols=64  Identities=16%  Similarity=0.147  Sum_probs=54.0

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec---cCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCc
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS---PKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDV  101 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~---~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~  101 (512)
                      ..|++.|+++|++||+|..|.|.   ...+|.|+|||.+.++|..|+..-.|  +.+.||+|.|-.+++
T Consensus        19 ~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~   87 (90)
T d2cqia1          19 DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPS   87 (90)
T ss_dssp             TCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTT
T ss_pred             CCCHHHHHHHHHhcCCceeeeeecccCccceeeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence            58999999999999999999763   34579999999999999999975344  467899999987653

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.5e-07  Score=78.01  Aligned_cols=61  Identities=21%  Similarity=0.239  Sum_probs=53.5

Q ss_pred             HHHHHHHhhccCCeeEEEEccCC-CceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecCCCc
Q psy3926         429 RESLTKIFSKYGKINILVISPKK-RGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       429 e~~L~~iFs~fG~I~~V~i~~~k-kg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~~~~  489 (512)
                      +++|++.|++||.|..|.+..++ +|+|||+|++.++|.+|+.  ++..+.+.+|.|.|+.++.
T Consensus        33 ~edv~~~~~~~G~V~~v~~~~~~~~G~~fV~f~~~e~A~~A~~~lng~~~~gr~i~v~~~~g~~   96 (99)
T d2dita1          33 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT   96 (99)
T ss_dssp             HHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred             HHHHHHHhcCcccEEEEeccCCCCccEEEEEECCHHHHHHHHHHhCCcEECCEEEEEEEeCCcC
Confidence            47899999999999999987654 8999999999999999997  4677888999999997654

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=9e-08  Score=85.91  Aligned_cols=68  Identities=22%  Similarity=0.317  Sum_probs=57.6

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCCCcccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~~~~r~  492 (512)
                      ..+|++.|+++|+.||.|..|.|..+     .+|+|||+|.+.++|.+|+.. +..+.+.+|.|.||.++.++.
T Consensus       107 ~~~te~~L~~~f~~~G~v~~~~i~~~~~~~~~~g~~fV~f~~~e~A~~Al~~~~~~~~G~~i~V~~A~~k~e~~  180 (183)
T d1u1qa_         107 EDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA  180 (183)
T ss_dssp             TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHTSSCEEETTEEEEEEECCCHHHHH
T ss_pred             CcCCHHHHhhhhccCCceeeeeeecccccCccceeEEEEECCHHHHHHHHHhCCCeECCEEEEEEecCCccccc
Confidence            36999999999999999999988754     268999999999999999963 344567899999998876654

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.6e-07  Score=79.51  Aligned_cols=76  Identities=16%  Similarity=0.140  Sum_probs=55.1

Q ss_pred             eEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCH-HHHHHHHHh--hcCCCCCceEEEecCCCc
Q psy3926         413 LRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHA-DSARRAKLY--ELGLPNCPLTLNYLNPDV  489 (512)
Q Consensus       413 lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~-~~A~~Ai~~--~~~~~~~pL~V~wa~~~~  489 (512)
                      +.+..-.+..  ..+|+++|+++|++||+|.+|.|... +|||||.|.+. ++|..|+..  +..+....+.|.|...++
T Consensus        11 ~~~~fvgnL~--~~~tee~Lk~~F~~fG~V~~v~i~~~-kg~gfV~F~~~~~~A~~a~~~~~~~~l~~~~~~v~~~~~~~   87 (113)
T d1owxa_          11 CLLKFSGDLD--DQTCREDLHILFSNHGEIKWIDFVRG-AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG   87 (113)
T ss_dssp             CEEEEEESCC--SSCCHHHHHHHTCSSCCEEEEECCTT-CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred             CeEEEECCCC--CCCCHHHHHHHHHhcCChheEEEecC-CceEEEEecCcHHHHHHHHHHhcCCceecCceEEEEeeccc
Confidence            3444443322  36999999999999999999999865 79999999995 678888864  344444566666665544


Q ss_pred             cc
Q psy3926         490 ER  491 (512)
Q Consensus       490 ~r  491 (512)
                      ++
T Consensus        88 ~~   89 (113)
T d1owxa_          88 EV   89 (113)
T ss_dssp             HH
T ss_pred             hh
Confidence            43

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.8e-07  Score=77.64  Aligned_cols=78  Identities=15%  Similarity=0.086  Sum_probs=60.3

Q ss_pred             CCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccC----CCceEEEEEcCHHHHHHHHH-hhcCCCCCceEE
Q psy3926         408 PENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPK----KRGSALLEFEHADSARRAKL-YELGLPNCPLTL  482 (512)
Q Consensus       408 ~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~----kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V  482 (512)
                      ....+|.|+     +.+-+.|+++|+++|..||.| .|.+..+    .+|+|||+|.+.++|.+|++ ++..+.+.+|.|
T Consensus        13 ~~~~~v~v~-----nLp~~~te~dl~~~F~~~~~~-~v~~~~~~~g~~~G~afVeF~~~~~a~~Al~~~~~~i~gR~I~V   86 (102)
T d1weza_          13 TTGHCVHMR-----GLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVEL   86 (102)
T ss_dssp             SSSCEEEEE-----SCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEE
T ss_pred             CCCCEEEEe-----CCCCcCCHHHHHHHHhccCcc-eeeeEEecCCcceEEEEEEECCHHHHHHHHHcCCCEECCEEEEE
Confidence            344566665     223469999999999999955 5665543    37999999999999999997 467778899999


Q ss_pred             EecCCCccc
Q psy3926         483 NYLNPDVER  491 (512)
Q Consensus       483 ~wa~~~~~r  491 (512)
                      .|+..++..
T Consensus        87 ~~s~~~~~~   95 (102)
T d1weza_          87 FLNSTAGTS   95 (102)
T ss_dssp             EEECCCCCC
T ss_pred             EEcCCCCCC
Confidence            999876543

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=3.5e-07  Score=75.08  Aligned_cols=62  Identities=21%  Similarity=0.345  Sum_probs=52.9

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh----hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY----ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~----e~g~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|..+.|.+ .+|.|+|||++.++|..|+..    +++....||+|+|-.+.
T Consensus        28 ~~t~~~l~~~f~~~G~i~~~~~~~-~~~~afV~f~~~~~A~~A~~~l~~~~i~g~~~~l~v~~ak~~   93 (97)
T d1whya_          28 NTSLAALAREFDRFGSIRTIDHVK-GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG   93 (97)
T ss_dssp             SCCHHHHHHHHHTTSCEEEEEECS-SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred             CCCHHHHHHHHHhhcccceEeeec-cccEEEeccCCHHHHHHHHHHhCCCEeCCCceEEEEEeCCCC
Confidence            589999999999999999998765 479999999999999999974    45545568999997644

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=4e-07  Score=75.59  Aligned_cols=67  Identities=15%  Similarity=0.136  Sum_probs=55.5

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEecCCCccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKL-YELGLPNCPLTLNYLNPDVER  491 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa~~~~~r  491 (512)
                      -..|+++|+++|+.||.|..++++.+     .+|+|||+|++.++|.+|+. +...+.+.+|.|.++.++..+
T Consensus        25 ~~~te~dI~~~F~~~g~v~~~v~~~~~~~~~~kG~afV~F~~~e~a~~a~~~~~~~i~gR~i~V~~~~~~~~~   97 (104)
T d1wg5a_          25 FGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVR   97 (104)
T ss_dssp             TTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTTTSC
T ss_pred             CCCCHHHHHHHHHhcCCceEEEEEEeCCCCCcceEEEEEeCCHHHHHHHHhhCCCEEcceEEEEEECCHHHhc
Confidence            46999999999999999988655532     37999999999999999996 456677899999999766543

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.6e-07  Score=78.29  Aligned_cols=61  Identities=15%  Similarity=0.309  Sum_probs=48.6

Q ss_pred             CCCcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh
Q psy3926         407 NPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY  471 (512)
Q Consensus       407 ~~~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~  471 (512)
                      +..+++|.|.   ..+.+..+|+++|+++|++||.|..|.+..+ +|+|||+|.+.++|..|+..
T Consensus        15 ~~pt~~l~V~---ng~L~~~vte~~L~~~F~~~G~i~~i~~~~~-k~~aFV~f~~~e~A~~A~~~   75 (101)
T d2cq2a1          15 SYATQSLVVA---NGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-KPYSFARYRTTEESKRAYVT   75 (101)
T ss_dssp             SSCCSEEEEE---TCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-CSCEEEEESSHHHHHHHHHH
T ss_pred             CCCCceEEEE---CCCCCCCCCHHHHHHHHHhhCcccEEeeccC-ccEEEEEECCHHHHHHHHHH
Confidence            3445566552   2122347999999999999999999988765 68999999999999999974

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.38  E-value=1.4e-07  Score=75.88  Aligned_cols=61  Identities=25%  Similarity=0.319  Sum_probs=48.1

Q ss_pred             CHHHHHHHHhhcCcccEEEec------cCCCceEEEEeccHHHHHHHHH-hhhCCCCCCcEEeecCCC
Q psy3926          40 TRESLTKIFSKYGKINILVIS------PKKRGSALLEFEHADSARRAKL-YELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        40 ~~~~l~~~f~kyG~v~~~v~~------~k~~g~A~vef~~~~aa~~a~~-~e~g~~~nPl~~~~l~~~  100 (512)
                      ++|.|+++|++||.|..|.|.      .+.+|.|+|+|.+.++|+.|++ +-.-+...+|+|+|-.|.
T Consensus        18 ~ed~l~~~F~~~G~i~~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~~n~~~~~gr~l~V~~a~~k   85 (86)
T d2ghpa3          18 DENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKK   85 (86)
T ss_dssp             CHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEECCCC
T ss_pred             cHHHHHHHHHhhhhccceeeecccCCccccceeeeEEECCHHHHHHHHhcCCCEECCEEEEEEEcCCC
Confidence            367799999999999999652      2557899999999999999986 222234678999987654

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=5.3e-07  Score=73.64  Aligned_cols=64  Identities=19%  Similarity=0.360  Sum_probs=53.6

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec------cCCCceEEEEeccHHHHHHHHHhh-hC--CCCCCcEEeecCCCc
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS------PKKRGSALLEFEHADSARRAKLYE-LG--LPNCPLTLNYLNPDV  101 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~------~k~~g~A~vef~~~~aa~~a~~~e-~g--~~~nPl~~~~l~~~~  101 (512)
                      ..+++.|+++|++||.|.+|.|.      .+.+|.|+|+|.+.++|..|+..= .|  +...||.|.|-.+..
T Consensus        19 ~~~e~~l~~~F~~~G~i~~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~Gr~l~V~~A~~~~   91 (94)
T d2cpha1          19 QANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEV   91 (94)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCC
T ss_pred             CCCHHHHHHHHHHhCCceEEEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCCcEECCEEEEEEEcCCCC
Confidence            58999999999999999999762      245799999999999999999642 34  667899999987653

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=5e-07  Score=72.41  Aligned_cols=59  Identities=27%  Similarity=0.401  Sum_probs=48.5

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhhhC----CCCCCcEEee
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYELG----LPNCPLTLNY   96 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g----~~~nPl~~~~   96 (512)
                      ..|++.|+++|++||+|..+.|.     .+.+|.|+|+|.+.++|+.|++.=.|    --..||.|.|
T Consensus        17 ~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kg~afV~f~~~~~a~~Ai~~lng~~~~G~~~~i~V~~   84 (85)
T d1fxla2          17 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF   84 (85)
T ss_dssp             TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             CCCHHHHHHHHHHhCCccccccccccccccCCCeeEEEEcCHHHHHHHHHHhCCCEeCCCCEEEEEEe
Confidence            58999999999999999998652     35678999999999999999974323    2246899988

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2.6e-07  Score=73.07  Aligned_cols=62  Identities=19%  Similarity=0.333  Sum_probs=51.3

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNP   99 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~   99 (512)
                      ..+++.|+++|++||.|.++.|.     .+.+|.|+|+|.+.++|+.|++.--|  +...||+|.|-.|
T Consensus        13 ~~te~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~AkP   81 (82)
T d1fxla1          13 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP   81 (82)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CCCHHHHHHHHHHhCCcccccceeeccCCCceeeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence            58999999999999999999653     36678999999999999999974322  3467899999654

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=2.9e-07  Score=77.34  Aligned_cols=62  Identities=31%  Similarity=0.423  Sum_probs=52.1

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec--cCCCceEEEEeccHHHHHHHHHhh--hCCCCCCcEEeecCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS--PKKRGSALLEFEHADSARRAKLYE--LGLPNCPLTLNYLNP   99 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~--~k~~g~A~vef~~~~aa~~a~~~e--~g~~~nPl~~~~l~~   99 (512)
                      .-|++.|+++|++||.|.+|.|.  .+.+|.|+|+|.+.++|..|+..=  .-+-+.||.|.|-.+
T Consensus        18 ~~te~~l~~~F~~~G~v~~i~~~~~~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~   83 (114)
T d2f9da1          18 KITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNA   83 (114)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEEEECSTTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred             CCCHHHHHHHHhhcCCeEeecccccCCcCCeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            58999999999999999999875  355799999999999999999743  334478999999653

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=5.5e-07  Score=72.23  Aligned_cols=63  Identities=11%  Similarity=0.223  Sum_probs=53.7

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      ..|++.|+++|++||.|..+.|.     .+.+|.|+|+|.+.++|..|+..  ..-+.+.||+|+|-.+.
T Consensus        12 ~~te~~l~~~F~~~G~v~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l~V~~A~~~   81 (85)
T d2u2fa_          12 YLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG   81 (85)
T ss_dssp             SCCSHHHHHHHTSSSCEEEEEEECCCSSSCCCCEEEEEESSSHHHHHHHHTSSSCCCSSSCCEEEECCCC
T ss_pred             CCCHHHHHHHHHhcCccceEEeeccccccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence            58999999999999999999663     35689999999999999999985  34455789999998765

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=4.4e-07  Score=73.05  Aligned_cols=62  Identities=26%  Similarity=0.389  Sum_probs=52.6

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|+.||+|.+|.|.+ .+|.|+|+|.+.++|..|++.  -.-....+|+|+|-.+.
T Consensus        19 ~~~~~~l~~~F~~~G~i~~i~~~~-~k~~afV~f~~~~~A~~A~~~l~g~~i~g~~l~V~~A~~~   82 (86)
T d2cpja1          19 DITEEEMRKLFEKYGKAGEVFIHK-DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS   82 (86)
T ss_dssp             TCCHHHHHHHTSTTCCCSEEEEET-TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred             CCCHHHHHHHHHHhCCceEeeeec-ccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCc
Confidence            589999999999999999998864 479999999999999999975  33345689999996543

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.29  E-value=6.6e-07  Score=71.49  Aligned_cols=59  Identities=27%  Similarity=0.398  Sum_probs=49.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhhhCC----CCCCcEEee
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYELGL----PNCPLTLNY   96 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g~----~~nPl~~~~   96 (512)
                      ..|++.|+.+|++||.|.++-|.     .+.+|.|+|+|.+.++|..|++.=-|.    ...||.|.|
T Consensus        17 ~~te~~l~~~F~~~G~i~~~~~~~d~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~V~~   84 (85)
T d1b7fa2          17 TITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL   84 (85)
T ss_dssp             TCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             CCCHHHHHHHHHhhCCEeeeeeecccccccCceeEEEEECCHHHHHHHHHHHCCCEeCCCCeEEEEEE
Confidence            58999999999999999999653     355689999999999999999853332    247999998

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.8e-07  Score=74.24  Aligned_cols=62  Identities=21%  Similarity=0.306  Sum_probs=51.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhh----hCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYE----LGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e----~g~~~nPl~~~~l~~~  100 (512)
                      +.+++.|+++|++||.|..|.+.. .+|.|+|||.+.++|..|+..=    .-.-+.||+|.|=...
T Consensus        19 ~~t~~~L~~~f~~~G~i~~v~~~~-~~~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~l~v~~sk~~   84 (88)
T d2cq1a1          19 EVTETEVIALGLPFGKVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK   84 (88)
T ss_dssp             TCCHHHHHHTTTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred             CCCHHHHHHHHhcccccccccccc-cceEEEEEeCCHHHHHHHHHHHccCCCccCCCEEEEEECCCC
Confidence            599999999999999999997764 4699999999999999998642    2234678999996543

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.27  E-value=5.5e-07  Score=72.58  Aligned_cols=61  Identities=21%  Similarity=0.322  Sum_probs=50.3

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLN   98 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~   98 (512)
                      ..|++.|+++|++||.|.+|.|..     +.+|.|+|||.+.++|+.|+..--|  +..++|.|+|--
T Consensus        18 ~~t~~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~f~~~~~A~~A~~~lng~~l~g~~l~V~~a~   85 (88)
T d1rk8a_          18 EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF   85 (88)
T ss_dssp             TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred             CCCHHHHHHHHHHcCCcccccccccccccccccceeEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence            589999999999999999986532     3478999999999999999975433  346789999954

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.2e-06  Score=70.22  Aligned_cols=62  Identities=21%  Similarity=0.216  Sum_probs=51.0

Q ss_pred             CCCHHHHHHHHhhcCcccEEEe-ccCCCceEEEEeccHHHHHHHHHhhhCC---CCCCcEEeecCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVI-SPKKRGSALLEFEHADSARRAKLYELGL---PNCPLTLNYLNP   99 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~-~~k~~g~A~vef~~~~aa~~a~~~e~g~---~~nPl~~~~l~~   99 (512)
                      ..+++.|+++|++||.|..+++ ..+.+|.|+|||.+.++|..|+..=.|.   ...||+|+|-.+
T Consensus        21 ~~te~~l~~~F~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~~~~i~~g~~l~v~~sk~   86 (88)
T d2adca2          21 SVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS   86 (88)
T ss_dssp             TCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred             CCCHHHHHHHhhccCCEEEEEEeeecccceeEEEECCHHHHHHHHHhccCCEecCCCEEEEEeCCC
Confidence            5899999999999999988765 5567899999999999999999653332   247899998543

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1e-06  Score=71.93  Aligned_cols=66  Identities=18%  Similarity=0.306  Sum_probs=53.7

Q ss_pred             CCCHHHHHHHHhhcCc-ccEEEec------cCCCceEEEEeccHHHHHHHHHh--hhCC--CCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGK-INILVIS------PKKRGSALLEFEHADSARRAKLY--ELGL--PNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~-v~~~v~~------~k~~g~A~vef~~~~aa~~a~~~--e~g~--~~nPl~~~~l~~~~~~  103 (512)
                      ..|++.|+++|++||+ |.+|.|.      .+.+|.|+|+|.+.++|..|++.  ..|.  ..+||+|.|-.|....
T Consensus        12 ~~te~~l~~~f~~~g~~i~~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~V~~A~p~~~~   88 (96)
T d2disa1          12 MKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDV   88 (96)
T ss_dssp             TSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCST
T ss_pred             cCCHHHHHHHHHHhCCcceEEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEEEEEcCCCCCC
Confidence            5899999999999996 8888773      35678999999999999999964  2333  2689999999876443

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.25  E-value=4.6e-07  Score=71.66  Aligned_cols=62  Identities=27%  Similarity=0.339  Sum_probs=50.9

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNP   99 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~   99 (512)
                      ..+++.|+++|++||.|.++.|..     +.+|-|+|+|.+.++|..|++.--|  +.+.||+|+|-.|
T Consensus        13 ~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~l~v~~a~p   81 (82)
T d1b7fa1          13 DMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP   81 (82)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CCCHHHHHHHHHHhCCcceeeeeeecccCCccccceEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            589999999999999999997632     4578999999999999999975333  3456899998654

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=4.2e-07  Score=72.67  Aligned_cols=61  Identities=18%  Similarity=0.212  Sum_probs=51.0

Q ss_pred             CCCCHHHHHHHhhccCCeeE-EEEccC----CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEec
Q psy3926         425 DVYTRESLTKIFSKYGKINI-LVISPK----KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYL  485 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~-V~i~~~----kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa  485 (512)
                      -.+|+++|+++|+.||.|.. |.+..+    .+|+|||+|++.++|.+|++  ++..+.+.+|.|+++
T Consensus        19 ~~~~~~di~~~F~~~~~~~~~~~~~~~~~g~~~G~afV~f~~~e~a~~Ai~~l~~~~l~gr~i~v~l~   86 (86)
T d2cqpa1          19 FTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG   86 (86)
T ss_dssp             TTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred             CCCCHHHHHHHHhhcccceeEEEEEeCCCCCcceEEEEEEcCcHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            47999999999999999976 444432    37999999999999999996  467778899999875

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1e-06  Score=71.71  Aligned_cols=63  Identities=17%  Similarity=0.218  Sum_probs=52.7

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhh--hCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYE--LGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e--~g~~~nPl~~~~l~~~  100 (512)
                      ..|++.|+++|++||+|..|.|.     .+.+|.|+|+|.+.++|+.|++.-  .-+-..+|+|.|-.+.
T Consensus        20 ~~t~~~l~~~F~~~G~v~~v~~~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~A~~~   89 (93)
T d1x5ua1          20 KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAH   89 (93)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTT
T ss_pred             cCCHHHHHHHHHHhCCccccceeecccccccccceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence            58999999999999999999653     366799999999999999999743  3344579999998665

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=7e-07  Score=73.92  Aligned_cols=66  Identities=20%  Similarity=0.277  Sum_probs=53.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..+++.|+++|++||+|.+|.|..     +.+|.|+|||.+.++|..|++.  -.-+...+|+|.|-.+...+
T Consensus        19 ~~te~~l~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~i~V~~a~~~~~~   91 (104)
T d1p1ta_          19 EATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK   91 (104)
T ss_dssp             TSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTHH
T ss_pred             cCCHHHHHHhhhccccccccccccccceeccCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCc
Confidence            589999999999999999996532     3468999999999999999964  34456789999998765433

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=8.5e-07  Score=69.85  Aligned_cols=60  Identities=18%  Similarity=0.359  Sum_probs=49.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeec
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYL   97 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l   97 (512)
                      ..|++.|+++|++||.|..+.|..    +.+|.|+|||.+.++|..|++.=-|  +-..||+|+|.
T Consensus        11 ~~~~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~V~~a   76 (78)
T d1no8a_          11 GVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV   76 (78)
T ss_dssp             TCCHHHHHHHHHHHSCEEEEEESCSSCCCSCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred             CCCHHHHHHHHHHhCCCeEEEEEEeeccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            589999999999999999997643    5578999999999999999974333  34578888875

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=6.8e-07  Score=70.56  Aligned_cols=62  Identities=16%  Similarity=0.250  Sum_probs=48.6

Q ss_pred             CCCHHHHHHHHhhcCcccEEEe-----ccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVI-----SPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNP   99 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~-----~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~   99 (512)
                      ..|++.|+++|++||.|..+++     ..+.+|.|+|+|.+.++|..|++.  ..-..+.||.|.|-.|
T Consensus        12 ~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i~V~~a~P   80 (81)
T d2ghpa1          12 SYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNP   80 (81)
T ss_dssp             TCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             cCCHHHHHHHHHHhCcEEeeeeecccccccccceeEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence            5899999999999999987754     346679999999999999999974  3444567888887654

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.7e-06  Score=69.49  Aligned_cols=63  Identities=25%  Similarity=0.450  Sum_probs=52.4

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|..+.+.     .+.+|.|+|+|.+.++|+.|++.  -.=+-..+|+|+|..+.
T Consensus        16 ~~t~~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~a~~~   85 (90)
T d1x5sa1          16 DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS   85 (90)
T ss_dssp             TCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECC
T ss_pred             cCCHHHHHHhhhccccccceeeccccccccccceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence            58999999999999999998642     35678999999999999999964  33345678999998655

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=1.7e-06  Score=70.92  Aligned_cols=66  Identities=24%  Similarity=0.254  Sum_probs=54.1

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~  103 (512)
                      .-+++.|+++|++||.|..|.|.     .+.+|.|+|+|.+.++|..|++.  -.=+-..||+|.|-.+....
T Consensus        19 ~~t~~~l~~~F~~~g~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~g~~~~gr~i~V~~a~~~~~~   91 (99)
T d1whwa_          19 TSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEA   91 (99)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCSTT
T ss_pred             cCCHHHHHHHHHhcCCceeeeecccccccccCcceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCcc
Confidence            47899999999999999999764     35579999999999999999964  23345689999998866444

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=5.4e-07  Score=71.43  Aligned_cols=65  Identities=18%  Similarity=0.140  Sum_probs=53.4

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC---CCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGL---PNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~---~~nPl~~~~l~~~~~~  103 (512)
                      +.|++.|+++|++||.|..+.+.. ++|.|+|+|.+.++|..|++.=.|.   ...||.|.|-.|...+
T Consensus        12 ~~te~~L~~~F~~~G~i~~~~~~~-~rg~aFV~f~~~~~A~~Ai~~lng~~~~~G~~i~V~~a~~k~~r   79 (80)
T d2cqha1          12 AVTADDLRQLFGDRKLPLAGQVLL-KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKLR   79 (80)
T ss_dssp             TCCHHHHHHHHHHTTCCCSSCEEE-ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCCC
T ss_pred             CCCHHHHHHHHHHhCcEEEeEEec-ccceEEEEECCHHHHHHHHHHhCCCeEECCEEEEEEEcCCcCcC
Confidence            589999999999999998765543 4799999999999999999754453   4679999998776543

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=5.7e-07  Score=71.16  Aligned_cols=60  Identities=22%  Similarity=0.215  Sum_probs=48.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhh--hCCCCCCcEEeec
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYE--LGLPNCPLTLNYL   97 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e--~g~~~nPl~~~~l   97 (512)
                      ..|++.|+++|++||.|..|.|..     +.+|-|.|+|.+.++|..|++.=  .-+...||+|.|-
T Consensus        11 ~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~i~v~~a   77 (80)
T d1cvja1          11 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS   77 (80)
T ss_dssp             TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHTTSTTCEETTEECEEEEC
T ss_pred             cCCHHHHHHHHHHhCCEeEEEEEecccccCCCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence            589999999999999999997642     44799999999999999999632  2233467888885

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=5.6e-07  Score=72.23  Aligned_cols=58  Identities=16%  Similarity=0.234  Sum_probs=47.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEee
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNY   96 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~   96 (512)
                      ..|++.|+++|++||.|.+|.|..    +.+|.|+|||.+.++|..|++. .|.  -..+|+|.|
T Consensus        17 ~~te~~l~~~F~~~G~v~~v~l~~~~~~~~kG~afV~f~~~e~a~~al~~-~~~~~~g~~l~v~~   80 (85)
T d1zh5a2          17 DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET-PGQKYKETDLLILF   80 (85)
T ss_dssp             TCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHTC-CCCEETTEECEEEE
T ss_pred             CCCHHHHHHHHHHhcccccceeeeeccCCcceEEEEEEcCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence            589999999999999999998743    3469999999999999999853 332  356788877

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=8.2e-07  Score=71.40  Aligned_cols=61  Identities=11%  Similarity=0.132  Sum_probs=50.9

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      +-+++.|+++|++||.|..+-|.+  +|.|+|+|.+.++|..|+..  ..=+...+|+|.|+.+.
T Consensus        11 ~~~~~~l~~~F~~~G~v~~~~i~~--~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~~~~~   73 (87)
T d3begb1          11 SGSWQDLKDHMREAGDVCYADVYR--DGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK   73 (87)
T ss_dssp             SCCTTHHHHHHGGGSCEEEEEECT--TSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred             cCCHHHHHHHHhhhcccccccccc--cceeeEEeCCHHHHHHHHHHhCCCEECCcEeEEeEEecC
Confidence            478999999999999999997744  49999999999999999974  33345678999988644

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=7.1e-07  Score=73.66  Aligned_cols=59  Identities=29%  Similarity=0.398  Sum_probs=50.4

Q ss_pred             CCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926          39 YTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        39 Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~  100 (512)
                      .+++.|+.+|++||.|..+.|+   +|.|+|+|.+.++|..|+..-.|  +-..+|+|.|-.++
T Consensus        28 ~~~~~L~~~F~~~G~i~~~~i~---rg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~   88 (98)
T d1wf2a_          28 VKKSDVEAIFSKYGKIVGCSVH---KGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEP   88 (98)
T ss_dssp             CCHHHHHHSSTTSSCEEEEEEE---TEEEEEEESSHHHHHHHHHTTTTCEETTEECEEEETTSC
T ss_pred             CCHHHHHHHHhhcCCEEEEEEe---CCeEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            5788999999999999999983   69999999999999999975444  34568999998644

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.1e-06  Score=71.51  Aligned_cols=61  Identities=21%  Similarity=0.306  Sum_probs=50.0

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLN   98 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~   98 (512)
                      ..|++.|+++|++||.|.+|.|..     +.+|-|+|+|.+.++|..|++.=.|.  ...||+|+|-.
T Consensus        18 ~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V~~a~   85 (93)
T d1h2vz_          18 YTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA   85 (93)
T ss_dssp             TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred             CCCHHHHHHHHHHHCCcceeccccccccccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            479999999999999999997632     34578999999999999999743333  45799999953

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=7.5e-07  Score=73.61  Aligned_cols=64  Identities=14%  Similarity=0.150  Sum_probs=53.0

Q ss_pred             CCCCHHHHHHHhhccCCeeE-EEEccC----CCceEEEEEcCHHHHHHHHHh-hcCCCCCceEEEecCCC
Q psy3926         425 DVYTRESLTKIFSKYGKINI-LVISPK----KRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPD  488 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~-V~i~~~----kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~pL~V~wa~~~  488 (512)
                      -.+|+++|+++|+.||.|.. |.+..+    .+|+|||+|.+.++|.+|+.. +..+.+.+|.|.++..+
T Consensus        18 ~~~t~~~l~~~F~~~g~i~~~~~~~~~~~g~~~G~afV~F~s~~~a~~Al~~n~~~i~gr~i~V~~~~~~   87 (103)
T d2cpya1          18 FSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLE   87 (103)
T ss_dssp             TTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECHH
T ss_pred             CCCCHHHHhhhhcccceEEEEEEEEeCCCCCcCccEEEEECCHHHHHHHHhcCCCeECCcEEEEEECCHH
Confidence            46999999999999999976 455442    389999999999999999963 46677889999998654

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.3e-06  Score=70.45  Aligned_cols=63  Identities=30%  Similarity=0.352  Sum_probs=52.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      ..|++.|+++|++||.|..|.|.     .+.+|.|.|+|.+.++|+.|+..  -.=+...||+|.|-.|.
T Consensus        16 ~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~~l~v~~a~p~   85 (89)
T d2cqba1          16 EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPM   85 (89)
T ss_dssp             SCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred             cCCHHHHHHHHhhCCeEEecccccccccccccceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence            58999999999999999999763     36689999999999999999964  22245689999998765

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=6.2e-07  Score=72.51  Aligned_cols=63  Identities=21%  Similarity=0.398  Sum_probs=52.0

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|..|.|..     +.+|.|+|+|.+.++|+.|++.=.|  +-..+|+|+|-.|.
T Consensus        19 ~~t~~~l~~~f~~~G~v~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~akp~   88 (90)
T d2cq0a1          19 DTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPS   88 (90)
T ss_dssp             TCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred             CCCHHHHHHHHHHhcccccccccccccccccccceeEEECCHHHHHHHHHHhCCCEECCEEEEEEeeeCC
Confidence            589999999999999999996642     4578999999999999999974332  34678999997654

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=1e-06  Score=70.18  Aligned_cols=63  Identities=25%  Similarity=0.328  Sum_probs=50.5

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc--------CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP--------KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~--------k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~  100 (512)
                      .-|++.|+++|++||.|..+.|..        +.+|.|+|+|.+.++|..|++.-.|  +-.+||.|.|-.+.
T Consensus         9 ~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g~~i~V~~a~~~   81 (85)
T d2cpfa1           9 STTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERA   81 (85)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCS
T ss_pred             CCCHHHHHHHHHHhCCccccceecccccccccccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence            478999999999999999997642        1267899999999999999975333  34679999996543

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.1e-06  Score=69.74  Aligned_cols=63  Identities=25%  Similarity=0.343  Sum_probs=50.2

Q ss_pred             CCCHHHHHHHHhhcCcccEE--Eec----cCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINIL--VIS----PKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~--v~~----~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~  100 (512)
                      ..|++.|+++|++||.|..+  |+.    .+.+|-|+|+|.+.++|..|+..-.|  +-..||+|.|-.|.
T Consensus         9 ~~te~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v~~a~~k   79 (83)
T d1x5ta1           9 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK   79 (83)
T ss_dssp             TCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCC
T ss_pred             cCcHHHHHHHHHHhCceeeeEEEEeeccccccCceEEEEECCHHHHHHHHHhCCCcEECCEEEEEEEecCC
Confidence            58999999999999999764  332    24579999999999999999974333  34678999997655

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.8e-06  Score=70.19  Aligned_cols=63  Identities=21%  Similarity=0.315  Sum_probs=51.3

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc---CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~---k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|..|.|..   ..+|.|+|+|.+.++|+.|+..  -.=+...+|+|+|-.|.
T Consensus        22 ~~t~~~L~~~F~~~G~v~~v~~~~~~~~~kg~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~A~~r   89 (93)
T d2cq3a1          22 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR   89 (93)
T ss_dssp             TCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred             CCCHHHHHHHHhhcceeeeccccccccCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCcC
Confidence            589999999999999999986532   3578999999999999999964  22234578999998765

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2.2e-06  Score=70.95  Aligned_cols=63  Identities=24%  Similarity=0.250  Sum_probs=51.5

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC-CCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG-LPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g-~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|.+|.|..     +.+|.|+|+|++.++|+.|++.-.| +...+|.|.|-.+.
T Consensus        21 ~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~Gr~l~V~~a~~~   89 (103)
T d2cqda1          21 HTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLG   89 (103)
T ss_dssp             SCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTTT
T ss_pred             cCcHHHHHHHHhhcccccceeccccccccccCCeEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcCCC
Confidence            589999999999999999997742     4689999999999999999964222 23567999988754

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2.7e-06  Score=70.74  Aligned_cols=58  Identities=21%  Similarity=0.272  Sum_probs=50.4

Q ss_pred             HHHHHHHhhccCCeeEEEEccC-------CCceEEEEEcCHHHHHHHHH--hhcCCCCCceEEEecC
Q psy3926         429 RESLTKIFSKYGKINILVISPK-------KRGSALLEFEHADSARRAKL--YELGLPNCPLTLNYLN  486 (512)
Q Consensus       429 e~~L~~iFs~fG~I~~V~i~~~-------kkg~A~V~F~s~~~A~~Ai~--~~~~~~~~pL~V~wa~  486 (512)
                      .++|++.|++||.|.+|.|..+       ..|+|||+|.+.++|.+|+.  ++..+.+.+|.|.|+.
T Consensus        28 ~edi~~e~~k~G~v~~v~I~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~Gr~f~gR~v~v~f~~   94 (104)
T d1o0pa_          28 VEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD   94 (104)
T ss_dssp             HHHHHHHHTTTSCEEEEECCCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSSCCSSSSCCEEEEEC
T ss_pred             HHHHHHHhcccCceEEEEEeecCCCCccCCceEEEEEECCHHHHHHHHHHHCCCEECCeEEEEEEcC
Confidence            3578999999999999999753       25899999999999999997  4777888999999985

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.3e-06  Score=70.93  Aligned_cols=63  Identities=13%  Similarity=0.213  Sum_probs=50.4

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhhhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g~~~nPl~~~~l~~~  100 (512)
                      ..|++.|+++|++||.|.+|.|.     .+.+|-|+|+|.+.++|+.|++.-..+-..+|.|.|-.+.
T Consensus        19 ~~te~~l~~~F~~~G~i~~v~i~~d~~tg~srG~aFV~f~~~~~a~~al~~~~~l~Gr~i~v~~a~~k   86 (90)
T d2cqga1          19 KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSK   86 (90)
T ss_dssp             SCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCTT
T ss_pred             CCCHHHHHHHHHhhcccceeeeccCCCCcccCCEEEEEECCHHHHHHHHhcCCccCCEEeEEEeCCCC
Confidence            58999999999999999999653     3557999999999999999997433333457888776554

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.3e-06  Score=72.86  Aligned_cols=62  Identities=18%  Similarity=0.218  Sum_probs=50.4

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+.+|++||.|..+.|.     .+.+|.|+|+|.+.++|..|++. .|  +-..||.|.|-.|.
T Consensus        31 ~~te~~L~~~F~~~G~i~~~~i~~d~~~~~~kg~aFV~f~~~~~a~~al~~-~~~~l~G~~i~V~~a~~k   99 (103)
T d1x4ba1          31 ETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR   99 (103)
T ss_dssp             CCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSC
T ss_pred             cCCHHHHHHHHHhhCcccceeecccccCCCccCeEEEEECCHHHHHHHHHh-CCCeECCEEEEEEECccc
Confidence            58999999999999999999874     35689999999999999999852 22  23457888876654

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.3e-06  Score=70.44  Aligned_cols=64  Identities=19%  Similarity=0.254  Sum_probs=52.1

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc---CCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDV  101 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~---k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~  101 (512)
                      ..|++.|+++|++||.|..+-|..   ..+|.|+|+|.+.++|..|++.  -.-+...+|.|+|-.+..
T Consensus        19 ~~t~~~l~~~F~~~G~v~~~~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~V~~a~~~~   87 (89)
T d1cvja2          19 SIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK   87 (89)
T ss_dssp             SCCHHHHHHHHHTTSCEEEEEECCBTTBCCSCEEEEESCHHHHHHHTTSSSEEEETTEEEEEEECCCTT
T ss_pred             CCCHHHHHHHHHhcCCceEEEEEeecCCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence            589999999999999999886532   3479999999999999999963  233446789999987653

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2.4e-06  Score=70.88  Aligned_cols=62  Identities=19%  Similarity=0.406  Sum_probs=50.0

Q ss_pred             CCCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCCC-------CCCcEEeecCC
Q psy3926          37 DVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLP-------NCPLTLNYLNP   99 (512)
Q Consensus        37 ~~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~~-------~nPl~~~~l~~   99 (512)
                      .+-|++.|+++|++||.|.+|.+.. .+|.|+|+|.+.++|..|+..=-|..       .-||.++|+.+
T Consensus        30 ~~vte~~L~~~F~~~G~i~~i~~~~-~k~~aFV~f~~~e~A~~A~~~lng~~i~~~~~~~i~~~~~~~~~   98 (101)
T d2cq2a1          30 NGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEK   98 (101)
T ss_dssp             GTCCHHHHHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESC
T ss_pred             CCCCHHHHHHHHHhhCcccEEeecc-CccEEEEEECCHHHHHHHHHHhCCCCCCCCCCcEEEEEEEeeee
Confidence            4689999999999999999998765 46999999999999999997644431       22566677754

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=98.09  E-value=8.1e-07  Score=72.63  Aligned_cols=64  Identities=19%  Similarity=0.269  Sum_probs=54.9

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDV  101 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~  101 (512)
                      ..|++.|+++|++||.|..+....+.+|.|+|||.+.++|..|+..  ..-+-..||+|.|-.|..
T Consensus        27 ~~te~~l~~~F~~~g~v~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~gr~i~V~~a~~k~   92 (96)
T d1fjca_          27 NITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG   92 (96)
T ss_dssp             SCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred             CCCHHHHHHHHHhcccceeeeecCccccEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEEeCCCC
Confidence            4899999999999999988877778899999999999999999963  333456799999987663

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=4.2e-06  Score=66.68  Aligned_cols=75  Identities=19%  Similarity=0.218  Sum_probs=58.0

Q ss_pred             cceEEEEeecCCCCCCCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926          23 YRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        23 ~~lk~~Wk~~~~~~~~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~  100 (512)
                      .+.|.=|-..-.  -..+++.|+++|++||.|..+.+. +.+|.|+|+|.+.++|..|+..--|  +-+.+|+|+|-.|+
T Consensus         6 ~~~k~l~V~nLp--~~~te~~l~~~F~~~g~i~~~~~~-~~rg~afV~f~~~~~A~~Ai~~l~~~~i~g~~i~V~~akP~   82 (86)
T d2cpda1           6 SSVKILYVRNLM--LSTSEEMIEKEFNNIKPGAVERVK-KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV   82 (86)
T ss_dssp             SCCCEEEEESCC--TTCCHHHHHHHHHTTSTTCEEEEE-ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred             cCCCEEEEcCCC--CCCCHHHHHHhhcccceeeeEEEc-cccEEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEeccCC
Confidence            344555655433  268999999999999999987764 4579999999999999999975222  34678999997665

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.09  E-value=2.4e-06  Score=74.16  Aligned_cols=66  Identities=23%  Similarity=0.378  Sum_probs=53.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~~  103 (512)
                      ..|++.|+++|++||.|..|.|.     .+.+|.|+|+|.+.++|..|+..  ..=+...+|+|.|-.+...+
T Consensus        53 ~~te~~l~~~F~~~G~i~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~~~~~  125 (139)
T d1u6fa1          53 TVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQR  125 (139)
T ss_dssp             TCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCC
T ss_pred             CCCHHHHHHHHHhhccccccccccccccccccceeeEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCCCCC
Confidence            47999999999999999998553     24578999999999999999963  33345689999998755443

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=2.6e-06  Score=69.16  Aligned_cols=63  Identities=16%  Similarity=0.334  Sum_probs=50.5

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhhh------C--CCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYEL------G--LPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~------g--~~~nPl~~~~l~~~  100 (512)
                      .-|++.|+++|++||.|..+.+.     .+.+|.|.|+|.+.++|..|++.=.      |  +...+|+|.|-.+.
T Consensus        19 ~~te~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr~l~v~~a~~k   94 (98)
T d1x4ha1          19 DSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTR   94 (98)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCC
T ss_pred             cCCHHHHHHHHhccccceeeeeccccccccccceEEEEEcCHHHHHHHHHHcccccccCCcEECCEEEEEEECCCC
Confidence            57999999999999999999763     3467999999999999999997421      2  23458999987654

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=2.1e-06  Score=69.90  Aligned_cols=61  Identities=20%  Similarity=0.269  Sum_probs=51.3

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec--cCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecC
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS--PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLN   98 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~--~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~   98 (512)
                      .-+++.|+++|++||.|..+.+.  .+.+|.|+|+|.+.++|..|++.  -.-+...+|+|+|=.
T Consensus        25 ~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g~~l~V~~a~   89 (95)
T d1x4aa1          25 DIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR   89 (95)
T ss_dssp             TCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             CCCHHHHHHHHhcCCceEEEEecccccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecc
Confidence            58999999999999999999874  35678999999999999999974  333457889999854

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.6e-06  Score=71.06  Aligned_cols=65  Identities=18%  Similarity=0.248  Sum_probs=54.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCCcc
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPDVE  102 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~~~  102 (512)
                      ..+++.|+.+|++||.|..+++.     .+.+|.|+|+|.+.++|..|+..  ..=+-..||.|+|-.+...
T Consensus        29 ~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ak~k~~  100 (102)
T d2cpxa1          29 RVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQ  100 (102)
T ss_dssp             TCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSC
T ss_pred             CCCHHHHHHHHhhccceeeEEeecccccccccccceEEeccHHHHHHHHHHhCCCEECCEEEEEEeCCCccc
Confidence            58999999999999999998653     46789999999999999999963  3334568999999876544

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=4.6e-06  Score=68.91  Aligned_cols=63  Identities=13%  Similarity=0.181  Sum_probs=51.0

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc-----CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP-----KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~-----k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~  100 (512)
                      ..+++.|+++|++||.|..+.+-.     +.+|.|+|+|.+.++|..|+..=.|  +...+|+|+|-.|.
T Consensus        29 ~~te~~l~~~F~~~G~i~~~~~~~~~~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~~i~V~~a~~k   98 (102)
T d2cpza1          29 EFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSK   98 (102)
T ss_dssp             SCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCS
T ss_pred             CCCHHHHHHHHHhhccccccceeeecccCCCccceEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEeCCC
Confidence            579999999999999999985422     4468999999999999999964222  34679999997665

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=4.8e-06  Score=64.28  Aligned_cols=58  Identities=19%  Similarity=0.271  Sum_probs=46.1

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEee
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNY   96 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~   96 (512)
                      +.|++.|+++|++||.|..+.+.     .+.+|.|+|+|.+.++|..|++. .|  +-+.||+|.|
T Consensus        10 ~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~afV~F~~~~~a~~al~~-~~~~l~gr~i~V~~   74 (75)
T d2msta_          10 NTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI-HFHEINNKMVECKK   74 (75)
T ss_dssp             SCCHHHHHHHHHTTSCCSEECCBCCTTCTTSCCEEEEECSCHHHHHHHHHC-SSCCBTTBCCEEEE
T ss_pred             CCCHHHHHHHHHHhCCcceeeeeeeccccccCceeEEEECCHHHHHHHHhc-CCCEECCeEEEEEE
Confidence            58999999999999999998752     36679999999999999999863 22  2245666654

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=4.1e-06  Score=65.38  Aligned_cols=45  Identities=22%  Similarity=0.392  Sum_probs=40.5

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHH
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKL   82 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~   82 (512)
                      +.|++.|+++|++||.|..+.|.     .+.+|.|.|+|.+.++|+.|++
T Consensus        10 ~~te~~l~~~F~~~G~i~~~~i~~d~~t~~~kg~afV~f~~~~~a~~Al~   59 (75)
T d1hd0a_          10 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD   59 (75)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEECCCBTTTTBCCSEEEEEESSHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhhccccccccccCCCCCCcCceEEEEECCHHHHHHHHh
Confidence            58999999999999999999764     3567999999999999999996

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=2.3e-07  Score=74.89  Aligned_cols=63  Identities=19%  Similarity=0.234  Sum_probs=53.0

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEcc----------CCCceEEEEEcCHHHHHHHHH-hhcCCCCCceEEEecCC
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISP----------KKRGSALLEFEHADSARRAKL-YELGLPNCPLTLNYLNP  487 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~----------~kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V~wa~~  487 (512)
                      ..+|+++|+++|+.||.|..+.+..          ..+|+|||+|.+.++|..|+. ++..+.+.+|.|.++.+
T Consensus        11 ~~~te~~l~~~F~~~g~~~~~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~~l~g~~~~Gr~l~V~r~k~   84 (90)
T d1u2fa_          11 FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD   84 (90)
T ss_dssp             TTCCTTHHHHHHHHHHTTTTSCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGGGGSSCCSSSSCCCCBCTTC
T ss_pred             CccchHHHHHHHHhhCcEEEEEEeccceeeecccCCCceEEEEEeCCHHHHHHHHhhCCcEECCEEEEECCCCC
Confidence            4799999999999999998776542          348999999999999999986 47888889999986543

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=4.8e-06  Score=69.43  Aligned_cols=62  Identities=18%  Similarity=0.136  Sum_probs=50.7

Q ss_pred             HHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCCCccc
Q psy3926          41 RESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLNPDVER  103 (512)
Q Consensus        41 ~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~~~~~  103 (512)
                      ++.|+.+|++||+|.++.+. +.+|.|+|+|.+.++|..|+..-.|.  ...||+|.|-.+....
T Consensus        24 k~~l~~lF~~~G~i~~~~~~-k~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~~~~   87 (104)
T d1weya_          24 RAKFESLFRTYDKDTTFQYF-KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLHIG   87 (104)
T ss_dssp             HHHHHHHHHTTCSSCEEEEE-TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSSCC
T ss_pred             HHHHHHHhcccccceEEEEe-cCCCEEEEEECCHHHHHHHHHHhcccccCCCEeEEeecccCCCC
Confidence            46799999999999999765 45789999999999999999865543  3578999998765443

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.8e-06  Score=72.68  Aligned_cols=75  Identities=11%  Similarity=0.128  Sum_probs=57.3

Q ss_pred             CcceeEEEeecCCCCCCCCCHHHHHHHhhccCCeeEEEEc-c----CCCceEEEEEcCHHHHHHHHH-hhcCCCCCceEE
Q psy3926         409 ENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGKINILVIS-P----KKRGSALLEFEHADSARRAKL-YELGLPNCPLTL  482 (512)
Q Consensus       409 ~~~~lkVKWk~~~~~~~~~te~~L~~iFs~fG~I~~V~i~-~----~kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~V  482 (512)
                      ..++|.|+ +..    -.+|+++|+++|+.||.|..+++. .    ..+|+|||+|.+.++|.+|+. ++..+.+.+|.|
T Consensus        17 ~~~~i~v~-nLp----~~~t~~di~~~F~~~g~~~~~~~~~~~~~g~~~G~afVeF~~~e~a~~al~~~~~~i~gR~i~V   91 (112)
T d1wela1          17 AGFCVYLK-GLP----FEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQV   91 (112)
T ss_dssp             CCCEEEEE-CCC----TTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEE
T ss_pred             CCeEEEEe-cCC----CcCcHHHHhhHHhhccccccceeeecCcccceeeEEEEEECCHHHHHHHHHcCCCcCCCEEEEE
Confidence            34466663 222    358999999999999999764333 2    237999999999999999986 467788899999


Q ss_pred             EecCCC
Q psy3926         483 NYLNPD  488 (512)
Q Consensus       483 ~wa~~~  488 (512)
                      .++.+.
T Consensus        92 ~~~~~~   97 (112)
T d1wela1          92 HPITKK   97 (112)
T ss_dssp             EEECHH
T ss_pred             EEcChH
Confidence            988654

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=3.8e-06  Score=65.94  Aligned_cols=45  Identities=16%  Similarity=0.437  Sum_probs=40.1

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHH
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKL   82 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~   82 (512)
                      +.|++.|+++|++||+|.+|.|.     .+.+|.|.|+|.+.++|..|+.
T Consensus        10 ~~te~~l~~~F~~~G~I~~v~i~~d~~t~~~rG~~FV~f~~~~~a~~al~   59 (75)
T d1x0fa1          10 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME   59 (75)
T ss_dssp             SCCHHHHHHHHHHHSCEEEEECCCCTTTCCTTCCEEEEESSSHHHHHHTT
T ss_pred             CCCHHHHHHHHHHhCCcccccccccccccccccEEEEEECCHHHHHHHHh
Confidence            57999999999999999999763     3567999999999999999984

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=4.5e-06  Score=68.67  Aligned_cols=64  Identities=13%  Similarity=0.111  Sum_probs=52.1

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~~~~  103 (512)
                      +.+++.|+++|++||+|..+-|.+  +|.|+|+|.+.++|..|++.=-|  +-..+|.|.|+.+...+
T Consensus        26 ~~~~~~L~~~F~~~G~v~~~~i~~--~g~afV~f~~~~~a~~Ai~~lng~~~~g~~i~v~~~~~~~~~   91 (98)
T d1wg4a_          26 SGSWQDLKDHMREAGDVCYADVQK--DGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPER   91 (98)
T ss_dssp             SCCHHHHHHHHTTSSCEEEEEEET--TTEEEEEESSHHHHHHHHHHHSSEEEECTTSCEEEEEEECCC
T ss_pred             CCCHHHHHHHHHhhcccccccccc--cceEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEEecCCCC
Confidence            689999999999999999998854  59999999999999999964222  23457999998755443

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=5.6e-06  Score=66.02  Aligned_cols=45  Identities=22%  Similarity=0.360  Sum_probs=40.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHH
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKL   82 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~   82 (512)
                      .-|++.|+++|++||.|..+.|.     .+.+|.|+|+|.+.++|..|++
T Consensus        17 ~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~a~~ai~   66 (84)
T d1l3ka1          17 ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN   66 (84)
T ss_dssp             TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhhccccceeecccccCCCcccEEEEEEcCHHHHHHHHH
Confidence            57999999999999999999663     3568999999999999999985

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=7.5e-06  Score=68.18  Aligned_cols=58  Identities=17%  Similarity=0.331  Sum_probs=47.4

Q ss_pred             CCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEee
Q psy3926          39 YTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNY   96 (512)
Q Consensus        39 Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~   96 (512)
                      .++|.|+++|+|||.|..|.|..    +.+|.|.|+|.+.++|..|+..=-|.  ...||.|+|
T Consensus        39 ~~ed~l~e~f~k~G~I~~v~I~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr~i~v~~  102 (104)
T d1jmta_          39 FFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL  102 (104)
T ss_dssp             HHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEE
T ss_pred             hhHHHHHHHhccCCCEEEEEeecCCCCCEeeEEEEEEechhHHHHHHHHHCCCEECCEEEEEEE
Confidence            56899999999999999998843    66799999999999999999754443  345676665

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=6.2e-06  Score=67.87  Aligned_cols=60  Identities=13%  Similarity=0.108  Sum_probs=46.7

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc----CCCceEEEEeccHHHHHHHHHhhhCCC--CCCcEEeec
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP----KKRGSALLEFEHADSARRAKLYELGLP--NCPLTLNYL   97 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~----k~~g~A~vef~~~~aa~~a~~~e~g~~--~nPl~~~~l   97 (512)
                      ..+++.|+++|++||.|..+++..    +.+|.|+|+|.+.++|..|+..=.|..  .-||.+.|-
T Consensus        29 ~~te~~L~~~F~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~i~gr~~~v~~~   94 (101)
T d1x5oa1          29 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT   94 (101)
T ss_dssp             TCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred             CCCHHHHHHHHhhcccccceeeecccccccccceeEEeCCHHHHHHHHHHhCCCEECCcCCccCCC
Confidence            589999999999999999887643    446899999999999999997544432  345555543

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=5.8e-06  Score=68.41  Aligned_cols=60  Identities=25%  Similarity=0.289  Sum_probs=48.4

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecC
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLN   98 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~   98 (512)
                      ..+++.|+++|+.||.|.+|.|.     .+.+|.|+|+|.+.++|..|+. -.|  +...||+|.|..
T Consensus        29 ~~te~~l~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~a~~A~~-l~g~~~~G~~l~V~~a~   95 (101)
T d2cq4a1          29 RIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQASQ   95 (101)
T ss_dssp             TCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHH-HTTEEETTEEEEEEEHH
T ss_pred             CCCHHHHHHHHcCCCeEEEEEeeecCCCccccceEEEEECCHHHHHHHHH-HCCCEECCEEEEEEECC
Confidence            68999999999999999999763     3678999999999999999985 233  234577777653

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=3.4e-06  Score=68.04  Aligned_cols=58  Identities=22%  Similarity=0.301  Sum_probs=44.5

Q ss_pred             CCCHHHH---HHHHhhcCcccEEEecc--------CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEe
Q psy3926          38 VYTRESL---TKIFSKYGKINILVISP--------KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLN   95 (512)
Q Consensus        38 ~Y~~~~l---~~~f~kyG~v~~~v~~~--------k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~   95 (512)
                      ..+++.|   .++|++||.|.+|.|..        ..+|.|.|+|.+.++|..|++.-.|  +-..||++|
T Consensus        19 ~~t~~~l~~~~e~F~~~G~I~~v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng~~~~gr~lkvS   89 (89)
T d2cpia1          19 RLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKAS   89 (89)
T ss_dssp             TTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred             ccCHHHHHHHHHHhcccCCceEEEEeeccCcCCCCCcceEEEEecccchhHHHHHHHhCCCEECCEEEEEC
Confidence            4788899   56899999999998743        1237899999999999999975333  345666664

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.9e-05  Score=70.29  Aligned_cols=68  Identities=15%  Similarity=0.156  Sum_probs=53.6

Q ss_pred             CCCCHHHHHHHhhccCCeeEEEEccC-----CCceEEEEEcCHHHHHHHHHhh-cCCCCCceEEEecCCCcccc
Q psy3926         425 DVYTRESLTKIFSKYGKINILVISPK-----KRGSALLEFEHADSARRAKLYE-LGLPNCPLTLNYLNPDVERE  492 (512)
Q Consensus       425 ~~~te~~L~~iFs~fG~I~~V~i~~~-----kkg~A~V~F~s~~~A~~Ai~~~-~~~~~~pL~V~wa~~~~~r~  492 (512)
                      -.+|+++|+++|++||.|.+|.+..+     .+|+|||+|.+.++|.+|+... ......++.+.+..+.....
T Consensus        16 ~~~te~~L~~~F~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~   89 (183)
T d1u1qa_          16 FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ   89 (183)
T ss_dssp             TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCCTTGGG
T ss_pred             CCCCHHHHHHHHHHcCCEEEEEeeecccCCCccCceecccCCHHHHHHHHHhcCCcccccchhhhhhhhccccc
Confidence            46999999999999999999988753     3799999999999999999752 33344667777776554443

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.1e-05  Score=68.00  Aligned_cols=60  Identities=17%  Similarity=0.137  Sum_probs=45.6

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccH-HHHHHHHHhhhC--CCCCCcEEeecC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHA-DSARRAKLYELG--LPNCPLTLNYLN   98 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~-~aa~~a~~~e~g--~~~nPl~~~~l~   98 (512)
                      .-|++.|+.+|++||+|..|.|.. .+|+|.|.|.+. ++|..|+..-.|  +.-..+.|.|-.
T Consensus        22 ~~tee~Lk~~F~~fG~V~~v~i~~-~kg~gfV~F~~~~~~A~~a~~~~~~~~l~~~~~~v~~~~   84 (113)
T d1owxa_          22 QTCREDLHILFSNHGEIKWIDFVR-GAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV   84 (113)
T ss_dssp             SCCHHHHHHHTCSSCCEEEEECCT-TCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred             CCCHHHHHHHHHhcCChheEEEec-CCceEEEEecCcHHHHHHHHHHhcCCceecCceEEEEee
Confidence            579999999999999999998864 479999999995 677777765443  233455555543

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.81  E-value=1.4e-05  Score=62.43  Aligned_cols=59  Identities=20%  Similarity=0.189  Sum_probs=45.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEecc---CCCceEEEEeccHHHHHHHHHhh-hCCCCCCcEEee
Q psy3926          38 VYTRESLTKIFSKYGKINILVISP---KKRGSALLEFEHADSARRAKLYE-LGLPNCPLTLNY   96 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~---k~~g~A~vef~~~~aa~~a~~~e-~g~~~nPl~~~~   96 (512)
                      ..+++.|+++|+.||.|..|.|..   +++|.|+|||.+.++|..|+... .=+-++||.|+-
T Consensus        11 ~~t~~~l~~~F~~~G~I~~v~~~~~~~~~~~~afV~F~~~~~a~~Al~~~~~~i~g~~i~V~~   73 (75)
T d2ghpa2          11 SYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSH   73 (75)
T ss_dssp             TCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred             CCCHHHHHHHHhcCCceEEEEEEeeccccceEEEEEEcchHHhHHHHHhcCcEECCEEEEEEE
Confidence            479999999999999999997743   55689999999999999998531 112235666654

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.3e-05  Score=63.27  Aligned_cols=46  Identities=39%  Similarity=0.554  Sum_probs=40.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHh
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLY   83 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~   83 (512)
                      ..|++.|+++|++||.|..+.|.     .+.+|.|+|+|.+.++|..|+..
T Consensus        20 ~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~   70 (83)
T d2cqca1          20 YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER   70 (83)
T ss_dssp             SCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCccccccccccccccccceEEEECCHHHHHHHHHH
Confidence            58999999999999999998653     24478999999999999999964

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.1e-05  Score=64.94  Aligned_cols=63  Identities=30%  Similarity=0.511  Sum_probs=50.3

Q ss_pred             CCCHHHHH----HHHhhcCcccEEEecc--CCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926          38 VYTRESLT----KIFSKYGKINILVISP--KKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~----~~f~kyG~v~~~v~~~--k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~  100 (512)
                      ..++++|+    .+|++||+|..|.+..  +.+|.|+|+|.+.++|..|++.--|  .-+.||.|.|-.+.
T Consensus        14 ~~t~~dl~~~l~~~f~~~G~i~~i~~~~~~~~~g~afV~F~~~~~A~~A~~~~~~~~~~g~~l~v~~ak~~   84 (91)
T d1nu4a_          14 KIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTD   84 (91)
T ss_dssp             TSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSC
T ss_pred             CCCHHHHHHHHHHHhcccccccceEEeeeccCCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeCCC
Confidence            46777775    5689999999998753  4579999999999999999975333  34689999997654

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=1.6e-05  Score=63.38  Aligned_cols=60  Identities=17%  Similarity=0.090  Sum_probs=45.4

Q ss_pred             CCCHHHHHHHhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHHh-hcCCCCC-ceEEEecCC
Q psy3926         426 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY-ELGLPNC-PLTLNYLNP  487 (512)
Q Consensus       426 ~~te~~L~~iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~~-~~~~~~~-pL~V~wa~~  487 (512)
                      ..+++.| +.|++||.|.++.+... +|+|+|+|.+.++|.+|++. +..+.+. .+.|.-..+
T Consensus        15 ~~~~~il-~~F~~~G~I~~~~~~~~-~~~~fV~f~~~~~A~~Al~~nG~~~~g~~~vgV~~~~~   76 (81)
T d1wwha1          15 ASASYIL-LQFAQYGNILKHVMSNT-GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCID   76 (81)
T ss_dssp             GGHHHHH-HHHHTTSCEEEEEECSS-SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECCC
T ss_pred             HHHHHHH-HHHHhhhhhheEEecCC-CCEEEEEEcccHHHHHHHhcCCCeECCcEEEEEEeCCC
Confidence            3455555 57999999999988654 79999999999999999973 4545554 456776544

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=9e-06  Score=62.44  Aligned_cols=46  Identities=26%  Similarity=0.357  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHh
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLY   83 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~   83 (512)
                      .-|++.|+++|++||.|..+.+.     .+.+|.|.|+|.+.++|..|++.
T Consensus         9 ~~te~~l~~~F~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~   59 (72)
T d1x4ea1           9 GTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA   59 (72)
T ss_dssp             TCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhhhccccccccccccccccccceeEEEECCHHHHHHHHHH
Confidence            57999999999999999998653     35789999999999999999964

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=1.3e-05  Score=63.00  Aligned_cols=46  Identities=17%  Similarity=0.376  Sum_probs=40.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHHh
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKLY   83 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~~   83 (512)
                      .-|++.|+++|++||.|..+.|.     .+.+|-|.|+|.+.++|..|++.
T Consensus        11 ~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~aFV~f~~~~~a~~al~~   61 (77)
T d1uawa_          11 QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ   61 (77)
T ss_dssp             SCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHT
T ss_pred             cCCHHHHHHHHHHhCCcceeeeecccCCCCccceEEEEECCHHHHHHHHHc
Confidence            46899999999999999988652     45789999999999999999963

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=1.7e-05  Score=65.21  Aligned_cols=65  Identities=23%  Similarity=0.293  Sum_probs=48.6

Q ss_pred             CCCHHHHHHHHhhcCcccEEEe-c-----cCCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVI-S-----PKKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~-~-----~k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l~~~~~~  103 (512)
                      .-|++.|+++|++|| |+.+.+ .     .+.+|.|+|||.+.++|..|+.. ..=+-..+|+|.|-.+....
T Consensus        26 ~~te~~l~~~f~~~g-~~~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~~~~~~~~~gr~l~V~~a~~~~~~   97 (104)
T d1wi8a_          26 DVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQAQDK   97 (104)
T ss_dssp             SCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCCCCCC
T ss_pred             cCCHHHHHHHHHHhc-cccceeeeeeccCCCcceeeeEEECCHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence            589999999999999 555543 2     24568999999999999877752 23334568999998766443

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=97.75  E-value=4.9e-06  Score=67.45  Aligned_cols=60  Identities=18%  Similarity=0.138  Sum_probs=48.3

Q ss_pred             CCCHHHHHHHHhhcCcccEEEe----ccCCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeec
Q psy3926          38 VYTRESLTKIFSKYGKINILVI----SPKKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYL   97 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~----~~k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l   97 (512)
                      .-+++.|+.+|++||.|..+.|    ..+.+|.|+|+|.+.++|..|++. -.-+...||.|.|-
T Consensus        24 ~~te~~l~~~F~~~G~i~~~~v~~~~~g~~kg~afv~F~~~e~a~~Al~~~g~~~~g~~i~V~~a   88 (91)
T d1fjeb1          24 NKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP   88 (91)
T ss_dssp             TSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred             cchHHHHHHHHhcCCcEEEeeeeecCCCCccEEeEEeeCCHHHHHHHHhcCCcEECCEEEEEEec
Confidence            5899999999999999998754    346789999999999999999863 22233567888774

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=3e-05  Score=60.41  Aligned_cols=61  Identities=18%  Similarity=0.279  Sum_probs=48.1

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      +.+++.|+++|++|| |..+.+ .+.+|.|+|+|.+.++|..|+..  -.=+-..||.|+|-...
T Consensus         9 ~~t~~~l~~~F~~~g-~~~~~~-~~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V~~a~~d   71 (75)
T d1wi6a1           9 DVTNQEVHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTD   71 (75)
T ss_dssp             TCCHHHHHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCST
T ss_pred             cCCHHHHHHHHhccc-ccceee-cccceeEEEEECCHHHHHHHHHHhCCccCCCCEEEEEEeCCC
Confidence            589999999999999 444443 35689999999999999999863  23344679999998533

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=1.4e-05  Score=64.98  Aligned_cols=63  Identities=17%  Similarity=0.301  Sum_probs=50.2

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-------------cCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-------------PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-------------~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~l~~~  100 (512)
                      ..|++.|+++|++||.|..+++.             .+.+|.|+|+|.+.++|..|++.  ..-+-..+|+|+|-.+.
T Consensus        19 ~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~a~~~   96 (101)
T d2cpea1          19 SVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKK   96 (101)
T ss_dssp             TCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCC
T ss_pred             cCCHHHHHHHHHHCceEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            68999999999999998644321             24569999999999999999975  33345679999997654

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.8e-05  Score=61.62  Aligned_cols=45  Identities=33%  Similarity=0.560  Sum_probs=39.7

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec-----cCCCceEEEEeccHHHHHHHHH
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS-----PKKRGSALLEFEHADSARRAKL   82 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~-----~k~~g~A~vef~~~~aa~~a~~   82 (512)
                      .-|++.|+++|++||.|..+.+.     .+.+|-|+|+|.+.++|+.|+.
T Consensus        13 ~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~~~~al~   62 (79)
T d1l3ka2          13 DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI   62 (79)
T ss_dssp             TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhccccccccccCCCCcccccEEEEEEcCHHHHHHHHH
Confidence            57999999999999999999763     2567899999999999999985

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=6.6e-05  Score=61.72  Aligned_cols=66  Identities=14%  Similarity=0.149  Sum_probs=51.1

Q ss_pred             CCCHHHHHHHHhhcCcccEEEe-----ccCCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeecCCCccc
Q psy3926          38 VYTRESLTKIFSKYGKINILVI-----SPKKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDVER  103 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~-----~~k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l~~~~~~  103 (512)
                      .-|++.|+++|+.||.|...|+     ..+.+|.|+|||++.++|..|+.. -.=+-..+|.|.+..+....
T Consensus        26 ~~te~dI~~~F~~~g~v~~~v~~~~~~~~~~kG~afV~F~~~e~a~~a~~~~~~~i~gR~i~V~~~~~~~~~   97 (104)
T d1wg5a_          26 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVR   97 (104)
T ss_dssp             TCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTTTSC
T ss_pred             CCCHHHHHHHHHhcCCceEEEEEEeCCCCCcceEEEEEeCCHHHHHHHHhhCCCEEcceEEEEEECCHHHhc
Confidence            4689999999999999988654     236679999999999999988853 22233457999988766443

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=2.8e-05  Score=62.33  Aligned_cols=61  Identities=10%  Similarity=0.177  Sum_probs=47.7

Q ss_pred             CCCHHHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~  100 (512)
                      +.+++.|+++|++|| |..+.+ .+.+|.|+|+|.+.++|..|+..-.|  +-..+|.|+|-.+.
T Consensus        16 ~~t~~~l~~lF~~~G-~~~~~~-~~~kg~afV~f~~~~~A~~Ai~~ln~~~~~G~~l~V~~a~~~   78 (88)
T d1wg1a_          16 DSNCQEVHDLLKDYD-LKYCYV-DRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD   78 (88)
T ss_dssp             SCCHHHHHHHTCSSC-CCCEEE-EGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred             ccChHHHHHHHHhcC-ceeeee-eccCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            689999999999999 333333 35579999999999999999965222  34678999997543

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=7.8e-05  Score=61.14  Aligned_cols=60  Identities=23%  Similarity=0.243  Sum_probs=49.3

Q ss_pred             HHHHHHHHhhcCcccEEEec-cCCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCCC
Q psy3926          41 RESLTKIFSKYGKINILVIS-PKKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLNPD  100 (512)
Q Consensus        41 ~~~l~~~f~kyG~v~~~v~~-~k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~~  100 (512)
                      ++.|++.|++||.|..|.|. .+.+|.|.|+|++.++|..|+..-.|.  -..||++++..|.
T Consensus        33 ~edv~~~~~~~G~V~~v~~~~~~~~G~~fV~f~~~e~A~~A~~~lng~~~~gr~i~v~~~~g~   95 (99)
T d2dita1          33 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGT   95 (99)
T ss_dssp             HHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSC
T ss_pred             HHHHHHHhcCcccEEEEeccCCCCccEEEEEECCHHHHHHHHHHhCCcEECCEEEEEEEeCCc
Confidence            47899999999999999764 466899999999999999999765553  3567888877544

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=1.5e-05  Score=63.18  Aligned_cols=59  Identities=19%  Similarity=0.235  Sum_probs=45.6

Q ss_pred             CCCHHHHHHHHhhcCcccEE-Eec----cCCCceEEEEeccHHHHHHHHHh--hhCCCCCCcEEee
Q psy3926          38 VYTRESLTKIFSKYGKINIL-VIS----PKKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNY   96 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~-v~~----~k~~g~A~vef~~~~aa~~a~~~--e~g~~~nPl~~~~   96 (512)
                      ..+++.|+++|+.||.|.+. .+.    .+.+|.|+|||++.++|..|++.  ..=+-..||.|++
T Consensus        20 ~~~~~di~~~F~~~~~~~~~~~~~~~~~g~~~G~afV~f~~~e~a~~Ai~~l~~~~l~gr~i~v~l   85 (86)
T d2cqpa1          20 TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL   85 (86)
T ss_dssp             TCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred             CCCHHHHHHHHhhcccceeEEEEEeCCCCCcceEEEEEEcCcHHHHHHHHHcCCCEECCEEEEEEE
Confidence            58999999999999999763 332    35579999999999999999863  3333456777664

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00011  Score=60.60  Aligned_cols=59  Identities=24%  Similarity=0.312  Sum_probs=48.3

Q ss_pred             HHHHHHHHhhcCcccEEEecc-------CCCceEEEEeccHHHHHHHHHhhhCC--CCCCcEEeecCC
Q psy3926          41 RESLTKIFSKYGKINILVISP-------KKRGSALLEFEHADSARRAKLYELGL--PNCPLTLNYLNP   99 (512)
Q Consensus        41 ~~~l~~~f~kyG~v~~~v~~~-------k~~g~A~vef~~~~aa~~a~~~e~g~--~~nPl~~~~l~~   99 (512)
                      .++|++.|+|||.|.+|+|..       ...|.|.|+|.+.++|..|+..=.|.  -..||.+.++.+
T Consensus        28 ~edi~~e~~k~G~v~~v~I~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~Gr~f~gR~v~v~f~~~   95 (104)
T d1o0pa_          28 VEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP   95 (104)
T ss_dssp             HHHHHHHHTTTSCEEEEECCCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSSCCSSSSCCEEEEECH
T ss_pred             HHHHHHHhcccCceEEEEEeecCCCCccCCceEEEEEECCHHHHHHHHHHHCCCEECCeEEEEEEcCH
Confidence            467999999999999999843       33589999999999999999876664  356788888753

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=8.8e-06  Score=65.28  Aligned_cols=60  Identities=18%  Similarity=0.265  Sum_probs=47.9

Q ss_pred             CCCHHHHHHHHhhcCcccEEEec----------cCCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeec
Q psy3926          38 VYTRESLTKIFSKYGKINILVIS----------PKKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYL   97 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~~----------~k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l   97 (512)
                      +.+++.|+++|++||.|..+.+.          .+.+|-|+|+|.+.++|+.|++. ..=+...||+|.+-
T Consensus        12 ~~te~~l~~~F~~~g~~~~~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~~l~g~~~~Gr~l~V~r~   82 (90)
T d1u2fa_          12 GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRP   82 (90)
T ss_dssp             TCCTTHHHHHHHHHHTTTTSCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGGGGSSCCSSSSCCCCBCT
T ss_pred             ccchHHHHHHHHhhCcEEEEEEeccceeeecccCCCceEEEEEeCCHHHHHHHHhhCCcEECCEEEEECCC
Confidence            68999999999999999887553          25689999999999999998752 33345678888753

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.0001  Score=60.46  Aligned_cols=63  Identities=17%  Similarity=0.150  Sum_probs=48.0

Q ss_pred             CCCHHHHHHHHhhcCcccEEEe----ccCCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeecCCCc
Q psy3926          38 VYTRESLTKIFSKYGKINILVI----SPKKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPDV  101 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~----~~k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l~~~~  101 (512)
                      .-|++.|+++|+.||.| .|.+    ..+.+|-|+|||.+.++|..|++. ..=+-..+|.|.|-.+..
T Consensus        26 ~~te~dl~~~F~~~~~~-~v~~~~~~~g~~~G~afVeF~~~~~a~~Al~~~~~~i~gR~I~V~~s~~~~   93 (102)
T d1weza_          26 RATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAG   93 (102)
T ss_dssp             TCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCCC
T ss_pred             cCCHHHHHHHHhccCcc-eeeeEEecCCcceEEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence            36899999999999855 4443    235578999999999999999863 233445789999877553

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00011  Score=60.09  Aligned_cols=62  Identities=15%  Similarity=0.185  Sum_probs=48.5

Q ss_pred             CCCHHHHHHHHhhcCcccE-EEec----cCCCceEEEEeccHHHHHHHHHhhhC--CCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINI-LVIS----PKKRGSALLEFEHADSARRAKLYELG--LPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~-~v~~----~k~~g~A~vef~~~~aa~~a~~~e~g--~~~nPl~~~~l~~~  100 (512)
                      .-|++.|+++|+.||.|.. +++.    .+.+|.|+|||.+.++|..|++. .|  +-..+|.|.|..+.
T Consensus        19 ~~t~~~l~~~F~~~g~i~~~~~~~~~~~g~~~G~afV~F~s~~~a~~Al~~-n~~~i~gr~i~V~~~~~~   87 (103)
T d2cpya1          19 SITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLE   87 (103)
T ss_dssp             TSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHH
T ss_pred             CCCHHHHhhhhcccceEEEEEEEEeCCCCCcCccEEEEECCHHHHHHHHhc-CCCeECCcEEEEEECCHH
Confidence            4789999999999999976 4442    35689999999999999999963 22  33467999887643

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.09  E-value=0.00029  Score=55.77  Aligned_cols=40  Identities=23%  Similarity=0.268  Sum_probs=34.5

Q ss_pred             HHHHHHHhhcCcccEEEeccCCCceEEEEeccHHHHHHHHH
Q psy3926          42 ESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKL   82 (512)
Q Consensus        42 ~~l~~~f~kyG~v~~~v~~~k~~g~A~vef~~~~aa~~a~~   82 (512)
                      +.+++.|++||+|.++.+.+ .+|.|.|+|++.++|+.|++
T Consensus        18 ~~il~~F~~~G~I~~~~~~~-~~~~~fV~f~~~~~A~~Al~   57 (81)
T d1wwha1          18 SYILLQFAQYGNILKHVMSN-TGNWMHIRYQSKLQARKALS   57 (81)
T ss_dssp             HHHHHHHHTTSCEEEEEECS-SSSEEEEEESSHHHHHHHHT
T ss_pred             HHHHHHHHhhhhhheEEecC-CCCEEEEEEcccHHHHHHHh
Confidence            44556899999999998754 36999999999999999995

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=8.7e-05  Score=61.91  Aligned_cols=63  Identities=13%  Similarity=0.168  Sum_probs=48.8

Q ss_pred             CCCHHHHHHHHhhcCcccEEEe-----ccCCCceEEEEeccHHHHHHHHHh-hhCCCCCCcEEeecCCC
Q psy3926          38 VYTRESLTKIFSKYGKINILVI-----SPKKRGSALLEFEHADSARRAKLY-ELGLPNCPLTLNYLNPD  100 (512)
Q Consensus        38 ~Y~~~~l~~~f~kyG~v~~~v~-----~~k~~g~A~vef~~~~aa~~a~~~-e~g~~~nPl~~~~l~~~  100 (512)
                      ..|++.|+++|+.||.|.++++     ..+.+|-|+|||.+.++|..|+.. ..=+-+.+|.|.+..+.
T Consensus        29 ~~t~~di~~~F~~~g~~~~~~~~~~~~~g~~~G~afVeF~~~e~a~~al~~~~~~i~gR~i~V~~~~~~   97 (112)
T d1wela1          29 EAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKK   97 (112)
T ss_dssp             TCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHH
T ss_pred             cCcHHHHhhHHhhccccccceeeecCcccceeeEEEEEECCHHHHHHHHHcCCCcCCCEEEEEEEcChH
Confidence            4899999999999999976432     246679999999999999988853 22245577888877543

>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Synaptojanin 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.19  E-value=0.13  Score=41.27  Aligned_cols=75  Identities=15%  Similarity=0.254  Sum_probs=54.8

Q ss_pred             CCCcceeEEEeecCCCC-CCCCCHHHHHH---HhhccCCeeEEEEccCCCceEEEEEcCHHHHHHHHH-hhcCCCCCceE
Q psy3926         407 NPENYRLRIRWKSSSTD-TDVYTRESLTK---IFSKYGKINILVISPKKRGSALLEFEHADSARRAKL-YELGLPNCPLT  481 (512)
Q Consensus       407 ~~~~~~lkVKWk~~~~~-~~~~te~~L~~---iFs~fG~I~~V~i~~~kkg~A~V~F~s~~~A~~Ai~-~~~~~~~~pL~  481 (512)
                      .+.+-||.|.-.....+ ...|+|+.+.+   .|..||.|.-|.+..+   ..+|+|.+..+|.+|+. ++....+..|+
T Consensus        12 GPpDgTIvV~i~~~s~e~~~~FDe~l~~~Llq~l~~~GeViLvRFv~d---~mwVTF~dG~SAL~al~l~g~~v~G~~l~   88 (95)
T d1ufwa_          12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG---QMLVTFADSHSALSVLDVDGMKVKGRAVK   88 (95)
T ss_dssp             CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT---EEEEECSCSHHHHHHHHGGGSEETTEEEE
T ss_pred             CCCCcEEEEEeccCCccccccCCHHHHHHHHHHHhhCCeEEEEEEeCC---eEEEEECCcHHHHHHhccCCeEEcceEEE
Confidence            45777888876642110 12577765554   4788999988888765   99999999999999997 45666777787


Q ss_pred             EEe
Q psy3926         482 LNY  484 (512)
Q Consensus       482 V~w  484 (512)
                      |+-
T Consensus        89 It~   91 (95)
T d1ufwa_          89 ISG   91 (95)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            764

>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Limkain-b1, LKAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.66  E-value=0.37  Score=36.81  Aligned_cols=58  Identities=17%  Similarity=0.241  Sum_probs=46.0

Q ss_pred             HHHHHHhhccCCeeEEEEcc--CCCceEEEEEcCHHHHHHHHHh--hcCCCCCceEEEecCC
Q psy3926         430 ESLTKIFSKYGKINILVISP--KKRGSALLEFEHADSARRAKLY--ELGLPNCPLTLNYLNP  487 (512)
Q Consensus       430 ~~L~~iFs~fG~I~~V~i~~--~kkg~A~V~F~s~~~A~~Ai~~--~~~~~~~pL~V~wa~~  487 (512)
                      +.|.++|+++|+|.+|.|..  +---.|.|...+..+|.-||..  -..+....|.|+++-+
T Consensus        11 q~L~~~f~~h~~V~sv~l~~~~dg~~~A~V~v~~~q~A~~~v~~LhR~KiG~KRI~Vs~~~~   72 (73)
T d2dgxa1          11 QLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATG   72 (73)
T ss_dssp             HHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             HHHHHHHHhheeEEEEEEEeccCCcEEEEEEcCCHHHHHHHHHHHHHHhcCCeEEEEEEecC
Confidence            56678899999999999875  3346799999999999999973  3445567788888754

>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Limkain-b1, LKAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.67  E-value=0.66  Score=35.35  Aligned_cols=43  Identities=23%  Similarity=0.343  Sum_probs=36.5

Q ss_pred             HHHHHHHHhhcCcccEEEeccCCCc--eEEEEeccHHHHHHHHHh
Q psy3926          41 RESLTKIFSKYGKINILVISPKKRG--SALLEFEHADSARRAKLY   83 (512)
Q Consensus        41 ~~~l~~~f~kyG~v~~~v~~~k~~g--~A~vef~~~~aa~~a~~~   83 (512)
                      +..|..+|++||.|..|.|..-..|  .|.|-+.+..+|..|+..
T Consensus        10 qq~L~~~f~~h~~V~sv~l~~~~dg~~~A~V~v~~~q~A~~~v~~   54 (73)
T d2dgxa1          10 QQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNS   54 (73)
T ss_dssp             HHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHH
T ss_pred             HHHHHHHHHhheeEEEEEEEeccCCcEEEEEEcCCHHHHHHHHHH
Confidence            3568899999999999999765444  599999999999999964